Merge pull request #10 in ~VCHOI/my_hdf5_fork from develop to feature/vfd_swmr

* commit 'c834d9f99d45e5b9752e8525fe8761ea5592bf2c': (41 commits)
  HDFFV-10568 fix hdf5_java library dependency
  Remove another extra path var
  Move muti-config dir setting to root process
  Fix one more intermediate location
  Use different variable
  Cleanup and add intermediate dir for java
  Java must use shared libs to allow dlopen calls
  Correct names
  Call new function
  Correct default API version for develop to 112.
  Fix typo
  HD prefix and whitespace
  Update RELEASE.txt with suggested changes
  Update MANIFEST file for new t_coll_md_read.c file
  Remove now-unused local variable
  Add fix for HDFFV-10501
  Revert testfile FILE change
  change FILE path
  Add testfiles to data copy
  Same changes needed for examples as test
  ...

7 files changed, 236 insertions, 239 deletions

diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt
index 7d41c8f..400039e 100644
--- a/tools/CMakeLists.txt
+++ b/tools/CMakeLists.txt
@@ -1,9 +1,6 @@
 cmake_minimum_required (VERSION 3.10)
 project (HDF5_TOOLS C)
 
-# --------------------------------------------------------------------
-# If testing was NOT enabled, then we need to build the tools library
-# --------------------------------------------------------------------
 add_subdirectory (lib)
 
 #-- Add the test sources
diff --git a/tools/lib/h5tools_utils.h b/tools/lib/h5tools_utils.h
index a31ba3a..4c2bf1e 100644
--- a/tools/lib/h5tools_utils.h
+++ b/tools/lib/h5tools_utils.h
@@ -157,7 +157,7 @@ typedef struct {
 /* obtain link info from H5tools_get_symlink_info() */
 typedef struct {
     H5O_type_t  trg_type;  /* OUT: target type */
-    char *trg_path;        /* OUT: target obj path. This must be freed 
+    char *trg_path;        /* OUT: target obj path. This must be freed
                             *      when used with H5tools_get_symlink_info() */
     haddr_t     objno;     /* OUT: target object address */
     unsigned long  fileno; /* OUT: File number that target object is located in */
diff --git a/tools/src/h5diff/h5diff_common.c b/tools/src/h5diff/h5diff_common.c
index 8f09c81..0c1521e 100644
--- a/tools/src/h5diff/h5diff_common.c
+++ b/tools/src/h5diff/h5diff_common.c
@@ -350,7 +350,7 @@ check_n_input( const char *str )
     unsigned i;
     char c;
 
-    for (i = 0; i < strlen(str); i++) {
+    for (i = 0; i < HDstrlen(str); i++) {
         c = str[i];
         if (i == 0) {
             if (c < 49 || c > 57) /* ascii values between 1 and 9 */
@@ -387,7 +387,7 @@ check_p_input( const char *str )
     the atof return value on a hexadecimal input is different
     on some systems; we do a character check for this
     */
-    if (strlen(str) > 2 && str[0] == '0' && str[1] == 'x')
+    if (HDstrlen(str) > 2 && str[0] == '0' && str[1] == 'x')
         return -1;
 
     x = atof(str);
@@ -421,7 +421,7 @@ check_d_input( const char *str )
     the atof return value on a hexadecimal input is different
     on some systems; we do a character check for this
     */
-    if (strlen(str) > 2 && str[0] == '0' && str[1] == 'x')
+    if (HDstrlen(str) > 2 && str[0] == '0' && str[1] == 'x')
         return -1;
 
     x = atof(str);
diff --git a/tools/src/h5import/h5import.c b/tools/src/h5import/h5import.c
index 76e78af..3b64a0e 100644
--- a/tools/src/h5import/h5import.c
+++ b/tools/src/h5import/h5import.c
@@ -494,7 +494,7 @@ static int readIntegerData(FILE *strm, struct Input *in)
                     return (-1);
                 }
 #ifdef H5DEBUGIMPORT
-                printf("readIntegerData %d (0x%.8X)\n", *in08, *in08);
+                HDprintf("readIntegerData %d (0x%.8X)\n", *in08, *in08);
 #endif
             }
             break;
@@ -531,7 +531,7 @@ static int readIntegerData(FILE *strm, struct Input *in)
 */
                     *in16 = temp16;
 #ifdef H5DEBUGIMPORT
-                printf("readIntegerData %d (0x%.8X)\n", *in16, temp16);
+                HDprintf("readIntegerData %d (0x%.8X)\n", *in16, temp16);
 #endif
             }
             break;
@@ -567,7 +567,7 @@ static int readIntegerData(FILE *strm, struct Input *in)
 */
                     *in32 = temp32;
 #ifdef H5DEBUGIMPORT
-                printf("readIntegerData %d (0x%.8X = 0x%.8X)\n", *in32, *in32, temp32);
+                HDprintf("readIntegerData %d (0x%.8X = 0x%.8X)\n", *in32, *in32, temp32);
 #endif
             }
             break;
@@ -605,7 +605,7 @@ static int readIntegerData(FILE *strm, struct Input *in)
 */
                     *in64 = temp64;
 #ifdef H5DEBUGIMPORT
-                printf("readIntegerData %d (0x%.8X)\n", *in64, temp64);
+                HDprintf("readIntegerData %d (0x%.8X)\n", *in64, temp64);
 #endif
             }
             break;
@@ -701,7 +701,7 @@ static int readUIntegerData(FILE *strm, struct Input *in)
 */
                     *in16 = temp16;
 #ifdef H5DEBUGIMPORT
-                printf("readUIntegerData %d (0x%.4X = 0x%.4X)\n", *in16, *in16, temp16);
+                HDprintf("readUIntegerData %d (0x%.4X = 0x%.4X)\n", *in16, *in16, temp16);
 #endif
             }
             break;
@@ -737,7 +737,7 @@ static int readUIntegerData(FILE *strm, struct Input *in)
 */
                     *in32 = temp32;
 #ifdef H5DEBUGIMPORT
-                printf("readUIntegerData %d (0x%.8X = 0x%.8X)\n", *in32, *in32, temp32);
+                HDprintf("readUIntegerData %d (0x%.8X = 0x%.8X)\n", *in32, *in32, temp32);
 #endif
             }
             break;
@@ -775,7 +775,7 @@ static int readUIntegerData(FILE *strm, struct Input *in)
 */
                     *in64 = temp64;
 #ifdef H5DEBUGIMPORT
-                printf("readUIntegerData %ld (0x%.8X = 0x%.8X)\n", *in64, *in64, temp64);
+                HDprintf("readUIntegerData %ld (0x%.8X = 0x%.8X)\n", *in64, *in64, temp64);
 #endif
             }
             break;
@@ -855,7 +855,7 @@ static int readFloatData(FILE *strm, struct Input *in)
 */
                     *bfp32 = temp32;
 #ifdef H5DEBUGIMPORT
-                printf("readFloatData %ld (0x%.8X = 0x%.8X)\n", *bfp32, *bfp32, temp32);
+                HDprintf("readFloatData %ld (0x%.8X = 0x%.8X)\n", *bfp32, *bfp32, temp32);
 #endif
             }
             break;
@@ -907,7 +907,7 @@ static int readFloatData(FILE *strm, struct Input *in)
 */
                     *bfp64 = temp64;
 #ifdef H5DEBUGIMPORT
-                printf("readFloatData %ld (0x%.16lX)\n", *bfp64, temp64);
+                HDprintf("readFloatData %ld (0x%.16lX)\n", *bfp64, temp64);
 #endif
             }
             break;
@@ -1099,7 +1099,7 @@ static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id)
      *-------------------------------------------------------------------------
      */
 #ifdef H5DEBUGIMPORT
-    printf("processStrHDFData DATATYPE STRING\n");
+    HDprintf("processStrHDFData DATATYPE STRING\n");
 #endif
 
     if ((type_id = H5Tcopy(H5T_C_S1)) < 0)
@@ -1136,7 +1136,7 @@ static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id)
     }
     H5E_END_TRY;
 #ifdef H5DEBUGIMPORT
-    printf("processStrHDFData DATATYPE STRING groups created\n");
+    HDprintf("processStrHDFData DATATYPE STRING groups created\n");
 #endif
 
     if ((space_id = H5Screate_simple(in->rank, in->sizeOfDimension, NULL)) < 0)
@@ -1149,7 +1149,7 @@ static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id)
         goto out;
 
 #ifdef H5DEBUGIMPORT
-    printf("processStrHDFData DATATYPE STRING ready to process strings\n");
+    HDprintf("processStrHDFData DATATYPE STRING ready to process strings\n");
 #endif
     line = 0;
     j = 0;
@@ -1159,36 +1159,36 @@ static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id)
         str2 = NULL;
         str3 = NULL;
 #ifdef H5DEBUGIMPORT
-            printf("processStrHDFData DATATYPE STRING[%llu]={%s}\n", (unsigned long long)line, str1);
+            HDprintf("processStrHDFData DATATYPE STRING[%llu]={%s}\n", (unsigned long long)line, str1);
 #endif
             /* process string to remove the first and last quote char */
             str2 = strchr(str1, '"');
             if (str2 != NULL) {
 #ifdef H5DEBUGIMPORT
-                    printf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", strlen(str2), str2);
+                    HDprintf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", HDstrlen(str2), str2);
 #endif
                 str2++;
 #ifdef H5DEBUGIMPORT
-                    printf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", strlen(str2), str2);
+                    HDprintf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", HDstrlen(str2), str2);
 #endif
                 str3 = strrchr(str2, '"');
                 if (str3 != NULL) {
 #ifdef H5DEBUGIMPORT
-                    printf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", strlen(str3), str3);
+                    HDprintf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", HDstrlen(str3), str3);
 #endif
                     *str3 = '\0';
 
 #ifdef H5DEBUGIMPORT
-                    printf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", strlen(str2), str2);
+                    HDprintf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", HDstrlen(str2), str2);
 #endif
 
-                    if(strlen(str2) > 0) {
+                    if(HDstrlen(str2) > 0) {
                         hid_t fspace_id;
                         hsize_t start[1];
                         hsize_t count[1] = { 1 };
 
 #ifdef H5DEBUGIMPORT
-                        printf("processStrHDFData DATATYPE STRING[%llu] store %s\n", (unsigned long long)line, str2);
+                        HDprintf("processStrHDFData DATATYPE STRING[%llu] store %s\n", (unsigned long long)line, str2);
 #endif
                         if ((fspace_id = H5Dget_space(dset_id)) < 0)
                             goto out;
@@ -1210,7 +1210,7 @@ static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id)
         j++;
     }
 #ifdef H5DEBUGIMPORT
-    printf("processStrHDFData DATATYPE STRING eof reached\n");
+    HDprintf("processStrHDFData DATATYPE STRING eof reached\n");
 #endif
 
     /* close */
@@ -1223,7 +1223,7 @@ static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id)
 
 out:
 #ifdef H5DEBUGIMPORT
-    printf("processStrHDFData DATATYPE STRING error exit\n");
+    HDprintf("processStrHDFData DATATYPE STRING error exit\n");
 #endif
 /* disable error reporting */
 H5E_BEGIN_TRY
@@ -1437,7 +1437,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
     }
     in->inputByteOrder = kindex;
 #ifdef H5DEBUGIMPORT
-    printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+    HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
 #endif
     in->inputArchitecture = 0; /* default to NATIVE */
 
@@ -1450,7 +1450,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
     if((scanret == 1) && !HDstrcmp("HDF5", key)) {
 #ifdef H5DEBUGIMPORT
         int pndx;
-        printf("\nh5dump file\n");
+        HDprintf("\nh5dump file\n");
 #endif
         in->h5dumpInput = 1;
         scanret = fscanf(strm, "%s", temp); /* filename */
@@ -1459,7 +1459,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
         while (scanret == 1) {
             if(!HDstrcmp("DATASET", key)) { /* PATH */
 #ifdef H5DEBUGIMPORT
-                printf("h5dump DATASET key\n");
+                HDprintf("h5dump DATASET key\n");
 #endif
                 if (in->configOptionVector[PATH] == 1) {
                     (void) HDfprintf(stderr, err3a, infile);
@@ -1470,7 +1470,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                     goto error;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump DATASET %s found\n", temp);
+                HDprintf("h5dump DATASET %s found\n", temp);
 #endif
                 if (parsePathInfo(&in->path, temp) == -1) {
                     (void) HDfprintf(stderr, err3b, infile);
@@ -1479,12 +1479,12 @@ static int processConfigurationFile(char *infile, struct Input *in)
                 in->configOptionVector[PATH] = 1;
                 scanret = fscanf(strm, "%s", temp); /* start bracket */
 #ifdef H5DEBUGIMPORT
-                printf("h5dump DATASET %s found\n", temp);
+                HDprintf("h5dump DATASET %s found\n", temp);
 #endif
             } /* if(!HDstrcmp("DATASET", key))  PATH */
             else if(!HDstrcmp("DATATYPE", key)) { /* INPUT-CLASS */
 #ifdef H5DEBUGIMPORT
-                printf("h5dump DATATYPE key\n");
+                HDprintf("h5dump DATATYPE key\n");
 #endif
                 if (in->configOptionVector[INPUT_CLASS] == 1) {
                     (void) HDfprintf(stderr, err4a, infile);
@@ -1496,14 +1496,14 @@ static int processConfigurationFile(char *infile, struct Input *in)
                     goto error;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump DATATYPE %s found\n", temp);
+                HDprintf("h5dump DATATYPE %s found\n", temp);
 #endif
                 if ((kindex = getInputClassType(in, temp)) == -1) {
                     (void) HDfprintf(stderr, err4b, infile);
                     goto error;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump DATATYPE type %d inputClass\n", in->inputClass);
+                HDprintf("h5dump DATATYPE type %d inputClass\n", in->inputClass);
 #endif
 
                 in->configOptionVector[INPUT_CLASS] = 1;
@@ -1519,21 +1519,21 @@ static int processConfigurationFile(char *infile, struct Input *in)
                         in->outputClass = 2;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump DATATYPE type %d outputClass\n", in->outputClass);
+                HDprintf("h5dump DATATYPE type %d outputClass\n", in->outputClass);
 #endif
 
                 if(in->inputClass == 5) { /* STRING */
                     int get_next_prop = 1;
                     in->outputClass = -1;
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump DATATYPE STRING found\n");
+                    HDprintf("h5dump DATATYPE STRING found\n");
 #endif
                     if (fscanf(strm, "%s", temp) != 1) { /* start bracket */
                         (void) HDfprintf(stderr, "%s", err18);
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump DATATYPE STRING %s found\n", temp);
+                    HDprintf("h5dump DATATYPE STRING %s found\n", temp);
 #endif
                     if (fscanf(strm, "%s", temp) != 1) { /* string properties */
                         (void) HDfprintf(stderr, "%s", err18);
@@ -1546,7 +1546,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 goto error;
                             }
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump DATATYPE STRING STRSIZE %s found\n", temp);
+                            HDprintf("h5dump DATATYPE STRING STRSIZE %s found\n", temp);
 #endif
                             if (HDstrcmp("H5T_VARIABLE;", temp)) {
                                 char *more = temp;
@@ -1556,7 +1556,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                     goto error;
                                 }
 #ifdef H5DEBUGIMPORT
-                                printf("h5dump DATATYPE STRING %d InputSize\n", in->inputSize);
+                                HDprintf("h5dump DATATYPE STRING %d InputSize\n", in->inputSize);
 #endif
                             }
                         }
@@ -1566,7 +1566,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 goto error;
                             }
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump DATATYPE STRING STRPAD %s found\n", temp);
+                            HDprintf("h5dump DATATYPE STRING STRPAD %s found\n", temp);
 #endif
                         }
                         else if(!HDstrcmp("CSET", key)) { /* CSET */
@@ -1575,7 +1575,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 goto error;
                             }
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump DATATYPE STRING CSET %s found\n", temp);
+                            HDprintf("h5dump DATATYPE STRING CSET %s found\n", temp);
 #endif
 
                         }
@@ -1585,7 +1585,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 goto error;
                             }
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump DATATYPE STRING  CTYPE %s found\n", temp);
+                            HDprintf("h5dump DATATYPE STRING  CTYPE %s found\n", temp);
 #endif
                         } /* if(!HDstrcmp("CSET", key)) */
                         if (fscanf(strm, "%s", temp) != 1) {
@@ -1593,7 +1593,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                             goto error;
                         }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump DATATYPE STRING %s found\n", temp);
+                        HDprintf("h5dump DATATYPE STRING %s found\n", temp);
 #endif
                         if(!HDstrcmp("}", temp)) { /* end bracket */
                             get_next_prop = 0;
@@ -1605,7 +1605,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                 hsize_t     temp_dims[MAX_NUM_DIMENSION];
 
 #ifdef H5DEBUGIMPORT
-                printf("h5dump DATASPACE key\n");
+                HDprintf("h5dump DATASPACE key\n");
 #endif
                 if (fscanf(strm, "%s", temp) != 1) {
                     (void) HDfprintf(stderr, "%s", err18);
@@ -1621,21 +1621,21 @@ static int processConfigurationFile(char *infile, struct Input *in)
                 else if(!HDstrcmp("SIMPLE", temp)) { /* SIMPLE */
                     int icount = 0;
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump DATASPACE SIMPLE found\n");
+                    HDprintf("h5dump DATASPACE SIMPLE found\n");
 #endif
                     if (fscanf(strm, "%s", temp) != 1) { /* start bracket */
                         (void) HDfprintf(stderr, err6b, infile);
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+                    HDprintf("h5dump DATASPACE SIMPLE %s found\n", temp);
 #endif
                     if (fscanf(strm, "%s", temp) != 1) { /* start paren */
                         (void) HDfprintf(stderr, err6b, infile);
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+                    HDprintf("h5dump DATASPACE SIMPLE %s found\n", temp);
 #endif
                     if(!HDstrcmp("(", temp)) { /* start paren */
                         int get_next_dim = 1;
@@ -1646,7 +1646,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                             goto error;
                         }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+                        HDprintf("h5dump DATASPACE SIMPLE %s found\n", temp);
 #endif
                         while (get_next_dim) {
                             char *more = temp;
@@ -1656,7 +1656,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 goto error;
                             }
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+                            HDprintf("h5dump DATASPACE SIMPLE %s found\n", temp);
 #endif
                             if(!HDstrcmp(")", temp)) { /* end paren */
                                 in->rank = ++icount;
@@ -1676,17 +1676,17 @@ static int processConfigurationFile(char *infile, struct Input *in)
                             goto error;
                         }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump DATASPACE SIMPLE %ld rank\n", in->rank);
+                        HDprintf("h5dump DATASPACE SIMPLE %ld rank\n", in->rank);
 #endif
                         for (i = 0; i < in->rank; i++) {
                             in->sizeOfDimension[i] = temp_dims[i];
                         }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump DATASPACE SIMPLE dims[%ld]:", in->rank);
+                        HDprintf("h5dump DATASPACE SIMPLE dims[%ld]:", in->rank);
                         for (pndx = 0; pndx < in->rank; pndx++) {
-                            printf(" %ld", in->sizeOfDimension[pndx]);
+                            HDprintf(" %ld", in->sizeOfDimension[pndx]);
                         }
-                        printf("\n");
+                        HDprintf("\n");
 #endif
                         in->configOptionVector[DIM] = 1;
                     } /* if(!HDstrcmp("(", key))  start paren */
@@ -1699,7 +1699,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+                    HDprintf("h5dump DATASPACE SIMPLE %s found\n", temp);
 #endif
                     if(!HDstrcmp("/", temp)) { /* / max dims */
                         if ((in->maxsizeOfDimension = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) {
@@ -1710,25 +1710,25 @@ static int processConfigurationFile(char *infile, struct Input *in)
                             goto error;
                         }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+                        HDprintf("h5dump DATASPACE SIMPLE %s found\n", temp);
 #endif
                         if(!HDstrcmp("(", temp)) { /* start paren */
                             int get_next_dim = 1;
                             int i = 0;
 
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump DATASPACE SIMPLE process max dim values\n");
+                            HDprintf("h5dump DATASPACE SIMPLE process max dim values\n");
 #endif
                             if (fscanf(strm, "%s", temp) != 1) { /* max dim with optional comma */
                                 (void) HDfprintf(stderr, err16c, infile);
                                 goto error;
                             }
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+                            HDprintf("h5dump DATASPACE SIMPLE %s found\n", temp);
 #endif
                             while (get_next_dim) {
 #ifdef H5DEBUGIMPORT
-                                printf("h5dump DATASPACE SIMPLE get max dim value\n");
+                                HDprintf("h5dump DATASPACE SIMPLE get max dim value\n");
 #endif
                                 if(!HDstrcmp("H5S_UNLIMITED", temp) || !HDstrcmp("H5S_UNLIMITED,", temp)) { /* unlimited */
                                     in->maxsizeOfDimension[i] = H5S_UNLIMITED;
@@ -1743,7 +1743,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                     goto error;
                                 }
 #ifdef H5DEBUGIMPORT
-                                printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+                                HDprintf("h5dump DATASPACE SIMPLE %s found\n", temp);
 #endif
                                 if(!HDstrcmp(")", temp)) { /* end paren */
                                     get_next_dim = 0;
@@ -1757,12 +1757,12 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 }
                             } /* while (get_next_dim) */
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump DATASPACE SIMPLE maxdims[%ld]:", in->rank);
+                            HDprintf("h5dump DATASPACE SIMPLE maxdims[%ld]:", in->rank);
                             for (pndx = 0; pndx < in->rank; pndx++) {
-                                printf(" %ld", in->maxsizeOfDimension[pndx]);
+                                HDprintf(" %ld", in->maxsizeOfDimension[pndx]);
                             }
-                            printf("\n");
-                            printf("h5dump DATASPACE SIMPLE get max dim finished\n");
+                            HDprintf("\n");
+                            HDprintf("h5dump DATASPACE SIMPLE get max dim finished\n");
 #endif
                         } /* if(!HDstrcmp("(", key))  start paren */
                         else {
@@ -1771,7 +1771,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                         }
                         scanret = fscanf(strm, "%s", temp); /* end bracket */
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+                        HDprintf("h5dump DATASPACE SIMPLE %s found\n", temp);
 #endif
                     } /* if(!HDstrcmp("/", key)) max dims separator */
                 } /* else if(!HDstrcmp("SIMPLE", key)) */
@@ -1782,21 +1782,21 @@ static int processConfigurationFile(char *infile, struct Input *in)
             } /* else if(!HDstrcmp("DATASPACE", key))  RANK and DIMENSIONS */
             else if(!HDstrcmp("STORAGE_LAYOUT", key)) { /* CHUNKED-DIMENSION-SIZES */
 #ifdef H5DEBUGIMPORT
-                printf("h5dump STORAGE_LAYOUT key\n");
+                HDprintf("h5dump STORAGE_LAYOUT key\n");
 #endif
                 if (fscanf(strm, "%s", temp) != 1) { /* start bracket */
                     (void) HDfprintf(stderr, err6b, infile);
                     goto error;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump STORAGE_LAYOUT %s found\n", temp);
+                HDprintf("h5dump STORAGE_LAYOUT %s found\n", temp);
 #endif
                 if (fscanf(strm, "%s", temp) != 1) { /* CHUNKED */
                     (void) HDfprintf(stderr, err6b, infile);
                     goto error;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump STORAGE_LAYOUT %s found\n", temp);
+                HDprintf("h5dump STORAGE_LAYOUT %s found\n", temp);
 #endif
                 if(!HDstrcmp("CHUNKED", temp)) { /* CHUNKED */
                     if ((in->sizeOfChunk = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) {
@@ -1808,7 +1808,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
+                    HDprintf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
 #endif
                     if(!HDstrcmp("(", temp)) { /* start paren */
                         int get_next_dim = 1;
@@ -1819,7 +1819,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                             goto error;
                         }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
+                        HDprintf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
 #endif
                         while (get_next_dim) {
                             char *more = temp;
@@ -1829,7 +1829,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 goto error;
                             }
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
+                            HDprintf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
 #endif
                             if(!HDstrcmp(")", temp)) { /* end paren */
                                 in->configOptionVector[RANK] = 1;
@@ -1844,11 +1844,11 @@ static int processConfigurationFile(char *infile, struct Input *in)
                             }
                         } /* while (get_next_dim) */
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump STORAGE_LAYOUT CHUNKED dims [%ld]:", in->rank);
+                        HDprintf("h5dump STORAGE_LAYOUT CHUNKED dims [%ld]:", in->rank);
                         for (pndx = 0; pndx < in->rank; pndx++) {
-                            printf(" %ld", in->sizeOfChunk[pndx]);
+                            HDprintf(" %ld", in->sizeOfChunk[pndx]);
                         }
-                        printf("\n");
+                        HDprintf("\n");
 #endif
                         in->configOptionVector[DIM] = 1;
                     } /* if(!HDstrcmp("(", key))  start paren */
@@ -1861,7 +1861,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
+                    HDprintf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
 #endif
                     if(!HDstrcmp("SIZE", temp)) { /* SIZE */
                         if (fscanf(strm, "%d", (&ival)) != 1) {
@@ -1869,7 +1869,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                             goto error;
                         }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump STORAGE_LAYOUT CHUNKED SIZE %d found\n", ival);
+                        HDprintf("h5dump STORAGE_LAYOUT CHUNKED SIZE %d found\n", ival);
 #endif
                     }
                     while (HDstrcmp("}", temp)) {
@@ -1878,7 +1878,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                             goto error;
                         }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
+                        HDprintf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
 #endif
                     }
                     in->configOptionVector[CHUNK] = 1;
@@ -1886,53 +1886,53 @@ static int processConfigurationFile(char *infile, struct Input *in)
             } /* else if(!HDstrcmp("STORAGE_LAYOUT", key))  CHUNKED-DIMENSION-SIZES */
             else if(!HDstrcmp("FILTERS", key)) { /* FILTERS */
 #ifdef H5DEBUGIMPORT
-                printf("h5dump FILTERS key\n");
+                HDprintf("h5dump FILTERS key\n");
 #endif
                 if (fscanf(strm, "%s", temp) != 1) { /* start bracket */
                     (void) HDfprintf(stderr, err6b, infile);
                     goto error;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump FILTERS %s found\n", temp);
+                HDprintf("h5dump FILTERS %s found\n", temp);
 #endif
                 if (fscanf(strm, "%s", temp) != 1) {
                     (void) HDfprintf(stderr, err6b, infile);
                     goto error;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump FILTERS %s found\n", temp);
+                HDprintf("h5dump FILTERS %s found\n", temp);
 #endif
                 if(!HDstrcmp("COMPRESSION", temp)) { /* COMPRESSION */
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump FILTERS COMPRESSION found\n");
+                    HDprintf("h5dump FILTERS COMPRESSION found\n");
 #endif
                     if (fscanf(strm, "%s", temp) != 1) { /* DEFLATE */
                         (void) HDfprintf(stderr, "%s", err18);
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump FILTERS COMPRESSION %s found\n", temp);
+                    HDprintf("h5dump FILTERS COMPRESSION %s found\n", temp);
 #endif
                     if (fscanf(strm, "%s", temp) != 1) { /* bgin bracket */
                         (void) HDfprintf(stderr, "%s", err18);
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump FILTERS COMPRESSION %s found\n", temp);
+                    HDprintf("h5dump FILTERS COMPRESSION %s found\n", temp);
 #endif
                     if (fscanf(strm, "%s", temp) != 1) { /* LEVEL */
                         (void) HDfprintf(stderr, "%s", err18);
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump FILTERS COMPRESSION %s found\n", temp);
+                    HDprintf("h5dump FILTERS COMPRESSION %s found\n", temp);
 #endif
                     if (fscanf(strm, "%d", (&ival)) != 1) {
                         (void) HDfprintf(stderr, "%s", err19);
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump FILTERS COMPRESSION LEVEL %d found\n", ival);
+                    HDprintf("h5dump FILTERS COMPRESSION LEVEL %d found\n", ival);
 #endif
                     in->compressionParam = ival;
                     if (fscanf(strm, "%s", temp) != 1) { /* end bracket */
@@ -1940,20 +1940,20 @@ static int processConfigurationFile(char *infile, struct Input *in)
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump FILTERS COMPRESSION %s found\n", temp);
+                    HDprintf("h5dump FILTERS COMPRESSION %s found\n", temp);
 #endif
                     in->compressionType = 0; /* ONLY GZIP supported */
                     in->configOptionVector[COMPRESS] = 1;
                 }
                 else if(!HDstrcmp("CONTIGUOUS", temp)) { /* CONTIGUOUS */
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump FILTERS CONTIGUOUS found\n");
+                        HDprintf("h5dump FILTERS CONTIGUOUS found\n");
 #endif
                     in->configOptionVector[COMPRESS] = 0;
                 }
                 else if(!HDstrcmp("NONE", temp)) { /* NONE */
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump FILTERS NONE found\n");
+                        HDprintf("h5dump FILTERS NONE found\n");
 #endif
                     in->configOptionVector[COMPRESS] = 0;
                 }
@@ -1962,28 +1962,28 @@ static int processConfigurationFile(char *infile, struct Input *in)
                     goto error;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump FILTERS %s found\n", temp);
+                HDprintf("h5dump FILTERS %s found\n", temp);
 #endif
             }
             else if(!HDstrcmp("SUBSET", key)) { /* reduce dimensions */
                 hsize_t     temp_dims[MAX_NUM_DIMENSION];
                 int get_next_prop = 1;
 #ifdef H5DEBUGIMPORT
-                printf("h5dump SUBSET key\n");
+                HDprintf("h5dump SUBSET key\n");
 #endif
                 if (fscanf(strm, "%s", temp) != 1) { /* start bracket */
                     (void) HDfprintf(stderr, err20, infile);
                     goto error;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump SUBSET %s found\n", temp);
+                HDprintf("h5dump SUBSET %s found\n", temp);
 #endif
                 if (fscanf(strm, "%s", temp) != 1) { /* SUBSET keyword */
                     (void) HDfprintf(stderr, "%s", err18);
                     goto error;
                 }
 #ifdef H5DEBUGIMPORT
-                printf("h5dump SUBSET %s found\n", temp);
+                HDprintf("h5dump SUBSET %s found\n", temp);
 #endif
                 while (get_next_prop) {
                     if(!HDstrcmp("COUNT", temp)) { /* COUNT */
@@ -1993,7 +1993,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                             goto error;
                         }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump SUBSET %s found\n", temp);
+                        HDprintf("h5dump SUBSET %s found\n", temp);
 #endif
                         if(!HDstrcmp("(", temp)) { /* start paren */
                             int get_next_dim = 1;
@@ -2004,7 +2004,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 goto error;
                             }
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump SUBSET COUNT [%s] found\n", temp);
+                            HDprintf("h5dump SUBSET COUNT [%s] found\n", temp);
 #endif
                             while (get_next_dim) {
                                 char *more = temp;
@@ -2014,7 +2014,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                     goto error;
                                 }
 #ifdef H5DEBUGIMPORT
-                                printf("h5dump SUBSET COUNT %s found\n", temp);
+                                HDprintf("h5dump SUBSET COUNT %s found\n", temp);
 #endif
                                 if(!HDstrcmp(");", temp)) { /* end paren */
                                     in->rank = ++icount;
@@ -2033,11 +2033,11 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 in->sizeOfDimension[i] = temp_dims[i];
                             }
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump SUBSET COUNT dims: [%d]", in->rank);
+                            HDprintf("h5dump SUBSET COUNT dims: [%d]", in->rank);
                             for (pndx = 0; pndx < in->rank; pndx++) {
-                                printf(" %ld", in->sizeOfDimension[pndx]);
+                                HDprintf(" %ld", in->sizeOfDimension[pndx]);
                             }
-                            printf("\n");
+                            HDprintf("\n");
 #endif
                             in->configOptionVector[DIM] = 1;
                         } /* if(!HDstrcmp("(", key))  start paren */
@@ -2049,7 +2049,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                             goto error;
                         }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump SUBSET %s found\n", temp);
+                        HDprintf("h5dump SUBSET %s found\n", temp);
 #endif
                         if(!HDstrcmp("(", temp)) { /* start paren */
                             int get_next_dim = 1;
@@ -2060,7 +2060,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 goto error;
                             }
 #ifdef H5DEBUGIMPORT
-                        printf("h5dump SUBSET BLOCK [%s] found\n", temp);
+                        HDprintf("h5dump SUBSET BLOCK [%s] found\n", temp);
 #endif
                             while (get_next_dim) {
                                 char *more = temp;
@@ -2070,7 +2070,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                     goto error;
                                 }
 #ifdef H5DEBUGIMPORT
-                                printf("h5dump SUBSET BLOCK %s found\n", temp);
+                                HDprintf("h5dump SUBSET BLOCK %s found\n", temp);
 #endif
                                 if(!HDstrcmp(");", temp)) { /* end paren */
                                     in->rank = ++icount;
@@ -2089,11 +2089,11 @@ static int processConfigurationFile(char *infile, struct Input *in)
                                 in->sizeOfDimension[i] = in->sizeOfDimension[i] * temp_dims[i];
                             }
 #ifdef H5DEBUGIMPORT
-                            printf("h5dump SUBSET BLOCK dims: [%d]", in->rank);
+                            HDprintf("h5dump SUBSET BLOCK dims: [%d]", in->rank);
                             for (pndx = 0; pndx < in->rank; pndx++) {
-                                printf(" %ld", in->sizeOfDimension[pndx]);
+                                HDprintf(" %ld", in->sizeOfDimension[pndx]);
                             }
-                            printf("\n");
+                            HDprintf("\n");
 #endif
                             in->configOptionVector[DIM] = 1;
                         } /* if(!HDstrcmp("(", key))  start paren */
@@ -2103,7 +2103,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
                         goto error;
                     }
 #ifdef H5DEBUGIMPORT
-                    printf("h5dump SUBSET %s found\n", temp);
+                    HDprintf("h5dump SUBSET %s found\n", temp);
 #endif
                     if(!HDstrcmp("}", temp)) { /* end bracket */
                         get_next_prop = 0;
@@ -2112,7 +2112,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
             } /* else if(!HDstrcmp("SUBSET", key)) */
             else if(!HDstrcmp("DATA", key)) { /* FINSHED */
 #ifdef H5DEBUGIMPORT
-                printf("h5dump DATA key\n");
+                HDprintf("h5dump DATA key\n");
 #endif
                 scanret = 0;
                 break;
@@ -2120,32 +2120,32 @@ static int processConfigurationFile(char *infile, struct Input *in)
             scanret = fscanf(strm, "%s", key);
         }
 #ifdef H5DEBUGIMPORT
-        printf("h5dump path");
+        HDprintf("h5dump path");
         for (pndx = 0; pndx < in->path.count; pndx++) {
-            printf(" : %s", in->path.group[pndx]);
-        }
-        printf("\n");
-        printf("h5dump inputClass=%d\n", in->inputClass);
-        printf("h5dump inputSize=%d\n", in->inputSize);
-        printf("h5dump inputArchitecture=%d\n", in->inputArchitecture);
-        printf("h5dump inputByteOrder=%d\n", in->inputByteOrder);
-        printf("h5dump rank=%d\n", in->rank);
-        printf("h5dump outputClass=%d\n", in->outputClass);
-        printf("h5dump outputSize=%d\n", in->outputSize);
-        printf("h5dump outputArchitecture=%d\n", in->outputArchitecture);
-        printf("h5dump outputByteOrder=%d\n", in->outputByteOrder);
-        printf("h5dump compressionType=%d\n", in->compressionType);
-        printf("h5dump compressionParam=%d\n", in->compressionParam);
-        printf("h5dump externFilename=%s\n", in->externFilename);
-        printf("h5dump sizeOfDimensions:\n");
+            HDprintf(" : %s", in->path.group[pndx]);
+        }
+        HDprintf("\n");
+        HDprintf("h5dump inputClass=%d\n", in->inputClass);
+        HDprintf("h5dump inputSize=%d\n", in->inputSize);
+        HDprintf("h5dump inputArchitecture=%d\n", in->inputArchitecture);
+        HDprintf("h5dump inputByteOrder=%d\n", in->inputByteOrder);
+        HDprintf("h5dump rank=%d\n", in->rank);
+        HDprintf("h5dump outputClass=%d\n", in->outputClass);
+        HDprintf("h5dump outputSize=%d\n", in->outputSize);
+        HDprintf("h5dump outputArchitecture=%d\n", in->outputArchitecture);
+        HDprintf("h5dump outputByteOrder=%d\n", in->outputByteOrder);
+        HDprintf("h5dump compressionType=%d\n", in->compressionType);
+        HDprintf("h5dump compressionParam=%d\n", in->compressionParam);
+        HDprintf("h5dump externFilename=%s\n", in->externFilename);
+        HDprintf("h5dump sizeOfDimensions:\n");
         for (pndx = 0; pndx < in->rank; pndx++) {
-            printf("  %ld\n", in->sizeOfDimension[pndx]);
+            HDprintf("  %ld\n", in->sizeOfDimension[pndx]);
         }
 #endif
     }
     else {
 #ifdef H5DEBUGIMPORT
-        printf("original option keyword parsing\n");
+        HDprintf("original option keyword parsing\n");
 #endif
         while (scanret == 1) {
             if ((kindex = mapKeywordToIndex(key)) == -1) {
@@ -2655,7 +2655,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 4;
@@ -2676,7 +2676,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 4;
@@ -2697,7 +2697,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 4;
@@ -2718,7 +2718,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 4;
@@ -2739,7 +2739,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 4;
@@ -2760,7 +2760,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 4;
@@ -2781,7 +2781,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 4;
@@ -2802,7 +2802,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 4;
@@ -2823,7 +2823,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 7;
@@ -2844,7 +2844,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 7;
@@ -2865,7 +2865,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 7;
@@ -2886,7 +2886,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 7;
@@ -2907,7 +2907,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 7;
@@ -2928,7 +2928,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 7;
@@ -2949,7 +2949,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 7;
@@ -2970,7 +2970,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 7;
@@ -3111,7 +3111,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 3;
@@ -3132,7 +3132,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 3;
@@ -3153,7 +3153,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 3;
@@ -3174,7 +3174,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = 3;
@@ -3250,7 +3250,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = -1;
@@ -3269,7 +3269,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = -1;
@@ -3288,7 +3288,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = -1;
@@ -3307,7 +3307,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = -1;
@@ -3326,7 +3326,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = -1;
@@ -3345,7 +3345,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = -1;
@@ -3364,7 +3364,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = -1;
@@ -3383,7 +3383,7 @@ static int getInputClassType(struct Input *in, char * buffer)
         }
         in->outputByteOrder = kindex;
     #ifdef H5DEBUGIMPORT
-        printf("h5dump inputByteOrder %d\n", in->inputByteOrder);
+        HDprintf("h5dump inputByteOrder %d\n", in->inputByteOrder);
     #endif
 
         kindex = -1;
@@ -3422,9 +3422,9 @@ static int getInputClassType(struct Input *in, char * buffer)
     if (in->configOptionVector[OUTPUT_SIZE] == 0)
         in->outputSize = in->inputSize;
 #ifdef H5DEBUGIMPORT
-    printf("h5dump DATATYPE InClass %d inputSize\n", in->inputSize);
-    printf("h5dump DATATYPE InClass %d outputSize\n", in->outputSize);
-    printf("h5dump DATATYPE InClass %d outputArchitecture\n", in->outputArchitecture);
+    HDprintf("h5dump DATATYPE InClass %d inputSize\n", in->inputSize);
+    HDprintf("h5dump DATATYPE InClass %d outputSize\n", in->outputSize);
+    HDprintf("h5dump DATATYPE InClass %d outputArchitecture\n", in->outputArchitecture);
 #endif
 
     in->inputClass = kindex;
@@ -4631,7 +4631,7 @@ static int process(struct Options *opt)
             intype = createInputDataType(in);
             outtype = createOutputDataType(in);
 #ifdef H5DEBUGIMPORT
-            printf("process intype %ld outtype %ld\n", intype, outtype);
+            HDprintf("process intype %ld outtype %ld\n", intype, outtype);
 #endif
 
             /* create property list */
diff --git a/tools/src/h5stat/h5stat.c b/tools/src/h5stat/h5stat.c
index ff67cf1..dc1dc4a 100644
--- a/tools/src/h5stat/h5stat.c
+++ b/tools/src/h5stat/h5stat.c
@@ -24,11 +24,11 @@
 /* Parameters to control statistics gathered */
 
 /* Default threshold for small groups/datasets/attributes */
-#define DEF_SIZE_SMALL_GROUPS       	10
-#define DEF_SIZE_SMALL_DSETS        	10
-#define DEF_SIZE_SMALL_ATTRS  		10
+#define DEF_SIZE_SMALL_GROUPS           10
+#define DEF_SIZE_SMALL_DSETS            10
+#define DEF_SIZE_SMALL_ATTRS            10
 
-#define SIZE_SMALL_SECTS        	10
+#define SIZE_SMALL_SECTS            10
 
 #define  H5_NFILTERS_IMPL        8     /* Number of currently implemented filters + one to
                                           accommodate for user-define filters + one
@@ -74,7 +74,7 @@ typedef struct iter_t {
     ohdr_info_t group_ohdr_info;        /* Object header information for groups */
 
     hsize_t  max_attrs;                 /* Maximum attributes from a group */
-    unsigned long *num_small_attrs;    	/* Size of small attributes tracked */
+    unsigned long *num_small_attrs;        /* Size of small attributes tracked */
     unsigned attr_nbins;                /* Number of bins for attribute counts */
     unsigned long *attr_bins;           /* Pointer to array of bins for attribute counts */
 
@@ -83,7 +83,7 @@ typedef struct iter_t {
     hsize_t max_dset_dims;              /* Maximum dimension size of dataset */
     unsigned long *small_dset_dims;    /* Size of dimensions of small datasets tracked */
     unsigned long dset_layouts[H5D_NLAYOUTS];           /* Type of storage for each dataset */
-    unsigned long dset_comptype[H5_NFILTERS_IMPL]; 	/* Number of currently implemented filters */
+    unsigned long dset_comptype[H5_NFILTERS_IMPL];     /* Number of currently implemented filters */
     unsigned long dset_ntypes;          /* Number of diff. dataset datatypes found */
     dtype_info_t *dset_type_info;       /* Pointer to dataset datatype information found */
     unsigned dset_dim_nbins;            /* Number of bins for dataset dimensions */
@@ -103,9 +103,9 @@ typedef struct iter_t {
     hsize_t super_ext_size;             /* superblock extension size */
     hsize_t ublk_size;                  /* user block size (if exists) */
     H5F_fspace_strategy_t fs_strategy;  /* File space management strategy */
-    hbool_t fs_persist;               	/* Free-space persist or not */
+    hbool_t fs_persist;                 /* Free-space persist or not */
     hsize_t fs_threshold;               /* Free-space section threshold */
-    hsize_t fsp_size;               	/* File space page size */
+    hsize_t fsp_size;                   /* File space page size */
     hsize_t free_space;                 /* Amount of freespace in the file */
     hsize_t free_hdr;                   /* Size of free space manager metadata in the file */
     unsigned long num_small_sects[SIZE_SMALL_SECTS];   /* Size of small free-space sections */
@@ -136,9 +136,9 @@ static int        display_dset_metadata = FALSE;    /* display file space info f
 static int        display_object = FALSE;  /* not implemented yet */
 
 /* Initialize threshold for small groups/datasets/attributes */
-static int	  sgroups_threshold = DEF_SIZE_SMALL_GROUPS;
-static int	  sdsets_threshold = DEF_SIZE_SMALL_DSETS;
-static int	  sattrs_threshold = DEF_SIZE_SMALL_ATTRS;
+static int      sgroups_threshold = DEF_SIZE_SMALL_GROUPS;
+static int      sdsets_threshold = DEF_SIZE_SMALL_DSETS;
+static int      sattrs_threshold = DEF_SIZE_SMALL_ATTRS;
 
 /* a structure for handling the order command-line parameters come in */
 struct handler_t {
@@ -257,7 +257,7 @@ leave(int ret)
 }
 
 
-
+
 /*-------------------------------------------------------------------------
  * Function: usage
  *
@@ -297,7 +297,7 @@ static void usage(const char *prog)
      HDfprintf(stdout, "     --enable-error-stack  Prints messages from the HDF5 error stack as they occur\n");
 }
 
-
+
 /*-------------------------------------------------------------------------
  * Function: ceil_log10
  *
@@ -324,7 +324,7 @@ ceil_log10(unsigned long x)
     return ret;
 } /* ceil_log10() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: attribute_stats
  *
@@ -374,7 +374,7 @@ attribute_stats(iter_t *iter, const H5O_info_t *oi)
      return 0;
 } /* end attribute_stats() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: group_stats
  *
@@ -456,7 +456,7 @@ done:
     return ret_value;
 } /* end group_stats() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: dataset_stats
  *
@@ -648,7 +648,7 @@ done:
      return ret_value;
 }  /* end dataset_stats() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: datatype_stats
  *
@@ -680,7 +680,7 @@ done:
      return ret_value;
 }  /* end datatype_stats() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: obj_stats
  *
@@ -736,7 +736,7 @@ done:
     return ret_value;
 } /* end obj_stats() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: lnk_stats
  *
@@ -834,7 +834,7 @@ freespace_stats(hid_t fid, iter_t *iter)
     return 0;
 } /* end freespace_stats() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: hand_free
  *
@@ -863,7 +863,7 @@ hand_free(struct handler_t *hand)
     } /* end if */
 } /* end hand_free() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: parse_command_line
  *
@@ -1041,7 +1041,7 @@ error:
     return -1;
 }
 
-
+
 /*-------------------------------------------------------------------------
  * Function: iter_free
  *
@@ -1106,7 +1106,7 @@ iter_free(iter_t *iter)
     } /* end if */
 } /* end iter_free() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_file_info
  *
@@ -1138,7 +1138,7 @@ print_file_info(const iter_t *iter)
     return 0;
 } /* print_file_info() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_file_metadata
  *
@@ -1198,7 +1198,7 @@ print_file_metadata(const iter_t *iter)
     return 0;
 } /* print_file_metadata() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_group_info
  *
@@ -1255,7 +1255,7 @@ print_group_info(const iter_t *iter)
     return 0;
 } /* print_group_info() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_group_metadata
  *
@@ -1282,7 +1282,7 @@ print_group_metadata(const iter_t *iter)
     return 0;
 } /* print_group_metadata() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_dataset_info
  *
@@ -1369,7 +1369,7 @@ print_dataset_info(const iter_t *iter)
     return 0;
 } /* print_dataset_info() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_dataset_metadata
  *
@@ -1398,7 +1398,7 @@ print_dset_metadata(const iter_t *iter)
     return 0;
 } /* print_dset_metadata() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_dset_dtype_meta
  *
@@ -1439,7 +1439,7 @@ print_dset_dtype_meta(const iter_t *iter)
     return 0;
 } /* print_dset_dtype_meta() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_attr_info
  *
@@ -1488,7 +1488,7 @@ print_attr_info(const iter_t *iter)
     return 0;
 } /* print_attr_info() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_freespace_info
  *
@@ -1538,7 +1538,7 @@ print_freespace_info(const iter_t *iter)
     return 0;
 } /* print_freespace_info() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_storage_summary
  *
@@ -1602,7 +1602,7 @@ print_storage_summary(const iter_t *iter)
     return 0;
 } /* print_storage_summary() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_file_statistics
  *
@@ -1649,7 +1649,7 @@ print_file_statistics(const iter_t *iter)
     if(display_summary)         print_storage_summary(iter);
 } /* print_file_statistics() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_object_statistics
  *
@@ -1672,7 +1672,7 @@ print_object_statistics(const char *name)
     printf("Object name %s\n", name);
 } /* print_object_statistics() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: print_statistics
  *
@@ -1698,7 +1698,7 @@ print_statistics(const char *name, const iter_t *iter)
         print_file_statistics(iter);
 } /* print_statistics() */
 
-
+
 /*-------------------------------------------------------------------------
  * Function: main
  *
@@ -1733,7 +1733,7 @@ main(int argc, const char *argv[])
     /* Disable tools error reporting */
     H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
     H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-    
+
     HDmemset(&iter, 0, sizeof(iter));
 
     if(parse_command_line(argc, argv, &hand) < 0)
@@ -1780,15 +1780,15 @@ main(int argc, const char *argv[])
             iter.free_hdr = finfo.free.meta_size;
         } /* end else */
 
-	iter.num_small_groups = (unsigned long *)HDcalloc((size_t)sgroups_threshold, sizeof(unsigned long));
-	iter.num_small_attrs = (unsigned long *)HDcalloc((size_t)(sattrs_threshold+1), sizeof(unsigned long));
-	iter.small_dset_dims = (unsigned long *)HDcalloc((size_t)sdsets_threshold, sizeof(unsigned long));
+    iter.num_small_groups = (unsigned long *)HDcalloc((size_t)sgroups_threshold, sizeof(unsigned long));
+    iter.num_small_attrs = (unsigned long *)HDcalloc((size_t)(sattrs_threshold+1), sizeof(unsigned long));
+    iter.small_dset_dims = (unsigned long *)HDcalloc((size_t)sdsets_threshold, sizeof(unsigned long));
 
-	if(iter.num_small_groups == NULL || iter.num_small_attrs == NULL || iter.small_dset_dims == NULL) {
-	    error_msg("Unable to allocate memory for tracking small groups/datasets/attributes\n");
+    if(iter.num_small_groups == NULL || iter.num_small_attrs == NULL || iter.small_dset_dims == NULL) {
+        error_msg("Unable to allocate memory for tracking small groups/datasets/attributes\n");
             h5tools_setstatus(EXIT_FAILURE);
-	    goto done;
-	}
+        goto done;
+    }
 
         if((fcpl = H5Fget_create_plist(fid)) < 0)
             warn_msg("Unable to retrieve file creation property\n");
diff --git a/tools/test/h5import/h5importtest.c b/tools/test/h5import/h5importtest.c
index 489bc01..bbb67b6 100644
--- a/tools/test/h5import/h5importtest.c
+++ b/tools/test/h5import/h5importtest.c
@@ -71,9 +71,9 @@ main(void)
     volatile uint32_t ibyte=0x01234567;
     /* 0 for big endian, 1 for little endian. */
     if ((*((uint8_t*)(&ibyte))) == 0x67)
-        strncpy(machine_order, "LE", 2);
+        HDstrncpy(machine_order, "LE", 2);
     else
-        strncpy(machine_order, "BE", 2);
+        HDstrncpy(machine_order, "BE", 2);
 
 
     /*
diff --git a/tools/test/perform/perf.c b/tools/test/perform/perf.c
index b421328..c6e62d5 100644
--- a/tools/test/perform/perf.c
+++ b/tools/test/perform/perf.c
@@ -63,13 +63,13 @@
 #define H5FATAL 1
 #define VRFY(val, mesg, fatal) do {                                            \
     if (!val) {                                                                \
-  	printf("Proc %d: ", mynod);                 \
+    printf("Proc %d: ", mynod);                 \
         printf("*** Assertion failed (%s) at line %4d in %s\n",                \
       mesg, (int)__LINE__, __FILE__);                  \
-  	if (fatal){                     \
+    if (fatal){                     \
       fflush(stdout);                   \
       goto die_jar_jar_die;                 \
-  	}                       \
+    }                       \
     }                                                                          \
 } while(0)
 #define RANK 1
@@ -180,38 +180,38 @@ int main(int argc, char **argv)
 
     /* setup file access template with parallel IO access. */
     if (opt_split_vfd){
-  	hid_t mpio_pl;
-
-  	mpio_pl = H5Pcreate (H5P_FILE_ACCESS);
-  	VRFY((acc_tpl >= 0), "", H5FATAL);
-  	ret = H5Pset_fapl_mpio(mpio_pl, MPI_COMM_WORLD, MPI_INFO_NULL);
-  	VRFY((ret >= 0), "", H5FATAL);
-
-  	/* set optional allocation alignment */
-  	if (opt_alignment*opt_threshold != 1){
-      	ret = H5Pset_alignment(acc_tpl, opt_threshold, opt_alignment );
-      	VRFY((ret >= 0), "H5Pset_alignment succeeded", !H5FATAL);
-  	}
-
-  	/* setup file access template */
-  	acc_tpl = H5Pcreate (H5P_FILE_ACCESS);
-  	VRFY((acc_tpl >= 0), "", H5FATAL);
-  	ret = H5Pset_fapl_split(acc_tpl, meta_ext, mpio_pl, raw_ext, mpio_pl);
-  	VRFY((ret >= 0), "H5Pset_fapl_split succeeded", H5FATAL);
-  	ret = H5Pclose(mpio_pl);
-  	VRFY((ret >= 0), "H5Pclose mpio_pl succeeded", H5FATAL);
+    hid_t mpio_pl;
+
+    mpio_pl = H5Pcreate (H5P_FILE_ACCESS);
+    VRFY((acc_tpl >= 0), "", H5FATAL);
+    ret = H5Pset_fapl_mpio(mpio_pl, MPI_COMM_WORLD, MPI_INFO_NULL);
+    VRFY((ret >= 0), "", H5FATAL);
+
+    /* set optional allocation alignment */
+    if (opt_alignment*opt_threshold != 1){
+        ret = H5Pset_alignment(acc_tpl, opt_threshold, opt_alignment );
+        VRFY((ret >= 0), "H5Pset_alignment succeeded", !H5FATAL);
+    }
+
+    /* setup file access template */
+    acc_tpl = H5Pcreate (H5P_FILE_ACCESS);
+    VRFY((acc_tpl >= 0), "", H5FATAL);
+    ret = H5Pset_fapl_split(acc_tpl, meta_ext, mpio_pl, raw_ext, mpio_pl);
+    VRFY((ret >= 0), "H5Pset_fapl_split succeeded", H5FATAL);
+    ret = H5Pclose(mpio_pl);
+    VRFY((ret >= 0), "H5Pclose mpio_pl succeeded", H5FATAL);
     }else{
-  	/* setup file access template */
-  	acc_tpl = H5Pcreate (H5P_FILE_ACCESS);
-  	VRFY((acc_tpl >= 0), "", H5FATAL);
-  	ret = H5Pset_fapl_mpio(acc_tpl, MPI_COMM_WORLD, MPI_INFO_NULL);
-  	VRFY((ret >= 0), "", H5FATAL);
-
-  	/* set optional allocation alignment */
-  	if (opt_alignment*opt_threshold != 1){
-  	    ret = H5Pset_alignment(acc_tpl, opt_threshold, opt_alignment );
-      	VRFY((ret >= 0), "H5Pset_alignment succeeded", !H5FATAL);
-  	}
+    /* setup file access template */
+    acc_tpl = H5Pcreate (H5P_FILE_ACCESS);
+    VRFY((acc_tpl >= 0), "", H5FATAL);
+    ret = H5Pset_fapl_mpio(acc_tpl, MPI_COMM_WORLD, MPI_INFO_NULL);
+    VRFY((ret >= 0), "", H5FATAL);
+
+    /* set optional allocation alignment */
+    if (opt_alignment*opt_threshold != 1){
+        ret = H5Pset_alignment(acc_tpl, opt_threshold, opt_alignment );
+        VRFY((ret >= 0), "H5Pset_alignment succeeded", !H5FATAL);
+    }
     }
 
     h5_fixname_no_suffix(FILENAME[0], acc_tpl, filename, sizeof filename);
@@ -225,7 +225,7 @@ int main(int argc, char **argv)
     sid = H5Screate_simple(RANK, dims, NULL);
     VRFY((sid >= 0), "H5Screate_simple succeeded", H5FATAL);
     dataset = H5Dcreate2(fid, "Dataset1", H5T_NATIVE_CHAR, sid,
-      		H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+            H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
     VRFY((dataset >= 0), "H5Dcreate2 succeeded", H5FATAL);
 
     /* create the memory dataspace and the file dataspace */