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| author | Larry Knox <lrknox@hdfgroup.org> | 2018-06-07 16:30:08 (GMT) |
|---|---|---|
| committer | Larry Knox <lrknox@hdfgroup.org> | 2018-06-07 16:30:08 (GMT) |
| commit | 551f15f8ae02ca9c995619b216121081eb07633e (patch) | |
| tree | 995de8be59b4d8524753eba6b542ce4039d54c79 /tools | |
| parent | b8c6b68c35fa2be23ef488a1d81097ff3ed55000 (diff) | |
| parent | 664186b91d9198915baca4c6dca3f7b03695d316 (diff) | |
| download | hdf5-hdf5-1_8_21.zip hdf5-hdf5-1_8_21.tar.gz hdf5-hdf5-1_8_21.tar.bz2 | |
Merge pull request #1106 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:1.8/master to 1.8/masterhdf5-1_8_21
* commit '664186b91d9198915baca4c6dca3f7b03695d316': (124 commits)
Commit HDF5 1.8.21 release version strings.
Update INSTALL and INSTALL_parallel files to remove references to ancient systems and add generic steps for building HDF5 on HPC clusters.
Update various INSTALL files for 1.8.21 release.
Add missing space and correct typo.
Modified a section for newly supported systems and compilers (vs. 1.8.20 release); Brought edits for tools bug fixes from 1.10.2 RELEASE.txt as we agreed with Allen.
It is my test under Larry's guidance.
Remove build directory which was unintentionally committed.
Updated MANIFEST
Switch default build mode to production. Update version to 1.8.21 in anticipation of release.
Fixed EED-319 Description: Added an html version for the C++ function mapping table and removed the single web page version. Updated cpp_doc_config to use the html file. Fixed some typos. Running "doxygen cpp_doc_config" successfully.
HDFFV-10473 fix HDFFV-10398 attribute location
Add missing C++ entries to RELEASE.txt.
pre1 release.
Add missing RELEASE.txt entries for C++.
Update Windows test machines
Fix soversion naming and update cmake scripts
Update version in RELEASE.txt. Correct merge errors from hdf5_1_8.
Fixed typos
Fixed typos
Fixed typos
...
Diffstat (limited to 'tools')
71 files changed, 4615 insertions, 3869 deletions
diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt index c9cc21b..6a12aa0 100644 --- a/tools/CMakeLists.txt +++ b/tools/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS) #----------------------------------------------------------------------------- @@ -14,36 +14,34 @@ INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) # -------------------------------------------------------------------- # If testing was NOT enabled, then we need to build the tools library # -------------------------------------------------------------------- -if (NOT BUILD_TESTING) - add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/lib) -endif () +add_subdirectory (lib) #-- Add the h5diff and test executables -add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/h5diff) +add_subdirectory (h5diff) #-- Add the h5ls executable -add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/h5ls) +add_subdirectory (h5ls) #-- Misc Executables -add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/misc) +add_subdirectory (misc) #-- Add the h5import and test executables -add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/h5import) +add_subdirectory (h5import) #-- h5Repack executables -add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/h5repack) +add_subdirectory (h5repack) #-- Add the h5dump and test executables -add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/h5jam) +add_subdirectory (h5jam) #-- Add the h5copy and test executables -add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/h5copy) +add_subdirectory (h5copy) #-- Add the h5stat and test executables -add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/h5stat) +add_subdirectory (h5stat) #-- Add the h5dump and test executables -add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/h5dump) +add_subdirectory (h5dump) #-- Add the perform and test executables -add_subdirectory (${HDF5_TOOLS_SOURCE_DIR}/perform) +add_subdirectory (perform) diff --git a/tools/Makefile.in b/tools/Makefile.in index d5b5ef8..138ebd2 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -688,6 +688,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1167,7 +1168,6 @@ uninstall-am: help: @$(top_srcdir)/bin/makehelp - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1255,28 +1255,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt index 406ca12..f94e369 100644 --- a/tools/h5copy/CMakeLists.txt +++ b/tools/h5copy/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_H5COPY) #----------------------------------------------------------------------------- @@ -10,7 +10,6 @@ INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib) # Add the h5copy and test executables # -------------------------------------------------------------------- add_executable (h5copy ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copy.c) -TARGET_NAMING (h5copy STATIC) TARGET_C_PROPERTIES (h5copy STATIC " " " ") target_link_libraries (h5copy ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5copy PROPERTIES FOLDER tools) @@ -20,7 +19,6 @@ set (H5_DEP_EXECUTABLES h5copy) if (BUILD_SHARED_LIBS) add_executable (h5copy-shared ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copy.c) - TARGET_NAMING (h5copy-shared SHARED) TARGET_C_PROPERTIES (h5copy-shared SHARED " " " ") target_link_libraries (h5copy-shared ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5copy-shared PROPERTIES FOLDER tools) @@ -32,7 +30,6 @@ endif () if (BUILD_TESTING) if (HDF5_BUILD_GENERATORS) add_executable (h5copygentest ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copygentest.c) - TARGET_NAMING (h5copygentest STATIC) TARGET_C_PROPERTIES (h5copygentest STATIC " " " ") target_link_libraries (h5copygentest ${HDF5_LIB_TARGET}) set_target_properties (h5copygentest PROPERTIES FOLDER generator/tools) @@ -53,10 +50,9 @@ endif () # Rules for Installation of tools using make Install target #----------------------------------------------------------------------------- if (HDF5_EXPORTED_TARGETS) - if (BUILD_SHARED_LIBS) - INSTALL_PROGRAM_PDB (h5copy-shared ${HDF5_INSTALL_BIN_DIR} toolsapplications) - endif () - INSTALL_PROGRAM_PDB (h5copy ${HDF5_INSTALL_BIN_DIR} toolsapplications) + foreach (exec ${H5_DEP_EXECUTABLES}) + INSTALL_PROGRAM_PDB (${exec} ${HDF5_INSTALL_BIN_DIR} toolsapplications) + endforeach () install ( TARGETS diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in index 981c7a2..c2aaa70 100644 --- a/tools/h5copy/Makefile.in +++ b/tools/h5copy/Makefile.in @@ -707,6 +707,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1228,7 +1229,6 @@ uninstall-am: uninstall-binPROGRAMS help: @$(top_srcdir)/bin/makehelp - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1316,28 +1316,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/h5copy/h5copy.c b/tools/h5copy/h5copy.c index 1d15d12..1800810 100644 --- a/tools/h5copy/h5copy.c +++ b/tools/h5copy/h5copy.c @@ -293,7 +293,7 @@ main (int argc, const char *argv[]) break; case 'E': - enable_error_stack = TRUE; + enable_error_stack = 1; break; default: @@ -330,7 +330,7 @@ main (int argc, const char *argv[]) leave(EXIT_FAILURE); } - if (enable_error_stack) { + if (enable_error_stack > 0) { H5Eset_auto2(H5E_DEFAULT, func, edata); H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); } diff --git a/tools/h5diff/CMakeLists.txt b/tools/h5diff/CMakeLists.txt index d26c742..4ef6fb7 100644 --- a/tools/h5diff/CMakeLists.txt +++ b/tools/h5diff/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_H5DIFF) #----------------------------------------------------------------------------- @@ -13,7 +13,6 @@ add_executable (h5diff ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diff_common.c ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diff_main.c ) -TARGET_NAMING (h5diff STATIC) TARGET_C_PROPERTIES (h5diff STATIC " " " ") target_link_libraries (h5diff ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5diff PROPERTIES FOLDER tools) @@ -26,7 +25,6 @@ if (BUILD_SHARED_LIBS) ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diff_common.c ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diff_main.c ) - TARGET_NAMING (h5diff-shared SHARED) TARGET_C_PROPERTIES (h5diff-shared SHARED " " " ") target_link_libraries (h5diff-shared ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5diff-shared PROPERTIES FOLDER tools) @@ -40,7 +38,6 @@ if (H5_HAVE_PARALLEL) ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diff_common.c ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/ph5diff_main.c ) - TARGET_NAMING (ph5diff STATIC) TARGET_C_PROPERTIES (ph5diff STATIC " " " ") target_link_libraries (ph5diff ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (ph5diff PROPERTIES FOLDER tools) @@ -53,7 +50,6 @@ if (BUILD_TESTING) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5diffgentest ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diffgentest.c) - TARGET_NAMING (h5diffgentest STATIC) TARGET_C_PROPERTIES (h5diffgentest STATIC " " " ") target_link_libraries (h5diffgentest ${HDF5_LIB_TARGET}) set_target_properties (h5diffgentest PROPERTIES FOLDER generator/tools) @@ -74,7 +70,7 @@ if (BUILD_TESTING) add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_diff.c) TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED " " " ") target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) - H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED ${HDF5_PACKAGE_SOVERSION}) + H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") # make plugins dir file (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins") @@ -105,10 +101,9 @@ endif () # Rules for Installation of tools using make Install target #----------------------------------------------------------------------------- if (HDF5_EXPORTED_TARGETS) - if (BUILD_SHARED_LIBS) - INSTALL_PROGRAM_PDB (h5diff-shared ${HDF5_INSTALL_BIN_DIR} toolsapplications) - endif () - INSTALL_PROGRAM_PDB (h5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications) + foreach (exec ${H5_DEP_EXECUTABLES}) + INSTALL_PROGRAM_PDB (${exec} ${HDF5_INSTALL_BIN_DIR} toolsapplications) + endforeach () install ( TARGETS diff --git a/tools/h5diff/CMakeTests.cmake b/tools/h5diff/CMakeTests.cmake index 14fc534..14fbee7 100644 --- a/tools/h5diff/CMakeTests.cmake +++ b/tools/h5diff/CMakeTests.cmake @@ -26,6 +26,7 @@ ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_dtypes.h5 ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_attr1.h5 ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_attr2.h5 + ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_attr3.h5 ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_dset1.h5 ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_dset2.h5 ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_dset3.h5 @@ -263,6 +264,8 @@ ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_800.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_801.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_90.txt + ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_8625.txt + ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_8639.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_ud.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_udfail.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_vlstr.txt @@ -978,6 +981,10 @@ h5diff_800.out.err h5diff_801.out h5diff_801.out.err + h5diff_8625.out + h5diff_8625.out.err + h5diff_8639.out + h5diff_8639.out.err h5diff_90.out h5diff_90.out.err h5diff_vlstr.out @@ -1551,7 +1558,11 @@ ADD_H5_TEST (h5diff_487 1 -v --exclude-path "/group1/dset" h5diff_exclude3-1.h5 # ############################################################################## # # diff various multiple vlen and fixed strings in a compound type dataset # ############################################################################## -ADD_H5_TEST (h5diff_530 0 -v ${COMP_VL_STRS_FILE} ${COMP_VL_STRS_FILE} /group /group_copy) +ADD_H5_TEST (h5diff_530 0 -v ${COMP_VL_STRS_FILE} ${COMP_VL_STRS_FILE} /group /group_copy) +# test to verify HDFFV-8625 +ADD_H5_TEST (h5diff_8625 0 -v --enable-error-stack ${COMP_VL_STRS_FILE} ${COMP_VL_STRS_FILE} /group/Compound_dset1 /group_copy/Compound_dset3) +# test to verify HDFFV-8639 +ADD_H5_TEST (h5diff_8639 0 -v h5diff_attr3.h5 h5diff_attr2.h5 /g1) ADD_H5_TEST (h5diff_vlstr 0 -v tvlstr.h5 tvlstr2.h5) # ############################################################################## diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in index 5f44cfd..218b7b8 100644 --- a/tools/h5diff/Makefile.in +++ b/tools/h5diff/Makefile.in @@ -740,6 +740,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1295,7 +1296,6 @@ help: @HAVE_SHARED_CONDITIONAL_TRUE@@NOT_UNAME_CYGWIN_TRUE@libdynlibdiff.la: $(libdynlibdiff_la_OBJECTS) $(libdynlibdiff_la_DEPENDENCIES) $(EXTRA_libdynlibdiff_la_DEPENDENCIES) @HAVE_SHARED_CONDITIONAL_TRUE@@NOT_UNAME_CYGWIN_TRUE@ $(AM_V_CCLD)$(libdynlibdiff_la_LINK) $(am_libdynlibdiff_la_rpath) $(libdynlibdiff_la_OBJECTS) $(libdynlibdiff_la_LIBADD) - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1383,28 +1383,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/h5diff/h5diff_common.c b/tools/h5diff/h5diff_common.c index 67977e9..6221843 100644 --- a/tools/h5diff/h5diff_common.c +++ b/tools/h5diff/h5diff_common.c @@ -115,14 +115,17 @@ void parse_command_line(int argc, default: usage(); h5diff_exit(EXIT_FAILURE); + break; case 'h': usage(); h5diff_exit(EXIT_SUCCESS); + break; case 'V': print_version(h5tools_getprogname()); h5diff_exit(EXIT_SUCCESS); + break; case 'v': opts->m_verbose = 1; @@ -175,7 +178,7 @@ void parse_command_line(int argc, break; case 'S': - enable_error_stack = TRUE; + enable_error_stack = 1; break; case 'E': diff --git a/tools/h5diff/h5diff_main.c b/tools/h5diff/h5diff_main.c index ad488a4..c5a0cbf 100644 --- a/tools/h5diff/h5diff_main.c +++ b/tools/h5diff/h5diff_main.c @@ -100,7 +100,7 @@ int main(int argc, const char *argv[]) */ parse_command_line(argc, argv, &fname1, &fname2, &objname1, &objname2, &opts); - if (enable_error_stack) { + if (enable_error_stack > 0) { H5Eset_auto2(H5E_DEFAULT, func, edata); H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); } diff --git a/tools/h5diff/h5diffgentest.c b/tools/h5diff/h5diffgentest.c index 7eeb6d3..2955d2c 100644 --- a/tools/h5diff/h5diffgentest.c +++ b/tools/h5diff/h5diffgentest.c @@ -1,15 +1,15 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * -* Copyright by The HDF Group. * -* Copyright by the Board of Trustees of the University of Illinois. * -* All rights reserved. * -* * -* This file is part of HDF5. The full HDF5 copyright notice, including * -* terms governing use, modification, and redistribution, is contained in * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * -* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include <stdio.h> #include <stdlib.h> @@ -29,16 +29,16 @@ size_t H5TOOLS_MALLOCSIZE = (128 * 1024 * 1024); /*------------------------------------------------------------------------- -* Program: h5diffgentest -* -* Purpose: generate files for h5diff testing -* -* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu -* -* Date: November 12, 2003 -* -*------------------------------------------------------------------------- -*/ + * Program: h5diffgentest + * + * Purpose: generate files for h5diff testing + * + * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * + * Date: November 12, 2003 + * + *------------------------------------------------------------------------- + */ #define FILE1 "h5diff_basic1.h5" #define FILE2 "h5diff_basic2.h5" @@ -46,6 +46,7 @@ size_t H5TOOLS_MALLOCSIZE = (128 * 1024 * 1024); #define FILE4 "h5diff_dtypes.h5" #define FILE5 "h5diff_attr1.h5" #define FILE6 "h5diff_attr2.h5" +#define FILE6a "h5diff_attr3.h5" #define FILE7 "h5diff_dset1.h5" #define FILE8 "h5diff_dset2.h5" #define FILE8A "h5diff_dset3.h5" @@ -108,37 +109,36 @@ size_t H5TOOLS_MALLOCSIZE = (128 * 1024 * 1024); #define SPACE1_DIM2 0 /* A UD link traversal function. Shouldn't actually be called. */ -static hid_t UD_traverse(H5_ATTR_UNUSED const char * link_name, H5_ATTR_UNUSED hid_t cur_group, - H5_ATTR_UNUSED const void * udata, H5_ATTR_UNUSED size_t udata_size, H5_ATTR_UNUSED hid_t lapl_id) -{ +static hid_t UD_traverse(H5_ATTR_UNUSED const char * link_name, + H5_ATTR_UNUSED hid_t cur_group, H5_ATTR_UNUSED const void * udata, + H5_ATTR_UNUSED size_t udata_size, H5_ATTR_UNUSED hid_t lapl_id) { return -1; } -const H5L_class_t UD_link_class[1] = {{ - H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ - (H5L_type_t)MY_LINKCLASS, /* Link type id number */ - "UD link class", /* name for debugging */ - NULL, /* Creation callback */ - NULL, /* Move/rename callback */ - NULL, /* Copy callback */ - UD_traverse, /* The actual traversal function */ - NULL, /* Deletion callback */ - NULL /* Query callback */ -}}; - +const H5L_class_t UD_link_class[1] = { { + H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ + (H5L_type_t) MY_LINKCLASS, /* Link type id number */ + "UD link class", /* name for debugging */ + NULL, /* Creation callback */ + NULL, /* Move/rename callback */ + NULL, /* Copy callback */ + UD_traverse, /* The actual traversal function */ + NULL, /* Deletion callback */ + NULL /* Query callback */ +} }; /*------------------------------------------------------------------------- -* prototypes -*------------------------------------------------------------------------- -*/ + * prototypes + *------------------------------------------------------------------------- + */ /* tests called in main() */ static int test_basic(const char *fname1, const char *fname2, const char *fname3); static int test_types(const char *fname); static int test_datatypes(const char *fname); -static int test_attributes(const char *fname,int make_diffs); -static int test_datasets(const char *fname,int make_diffs); -static int test_special_datasets(const char *fname,int make_diffs); -static int test_hyperslab(const char *fname,int make_diffs); +static int test_attributes(const char *fname, int make_diffs); +static int test_datasets(const char *fname, int make_diffs); +static int test_special_datasets(const char *fname, int make_diffs); +static int test_hyperslab(const char *fname, int make_diffs); static int test_link_name(const char *fname1); static int test_soft_links(const char *fname1); static int test_linked_softlinks(const char *fname1); @@ -153,53 +153,59 @@ static int test_exclude_obj3(const char *fname1, const char *fname2); static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int is_file_new); static int test_attributes_verbose_level(const char *fname1, const char *fname2); static int test_enums(const char *fname); -static void test_comps_array (const char *fname, const char *dset, const char *attr,int diff, int is_file_new); -static void test_comps_vlen (const char *fname, const char *dset,const char *attr, int diff, int is_file_new); -static void test_comps_array_vlen (const char *fname, const char *dset, const char *attr, int diff, int is_file_new); -static void test_comps_vlen_arry (const char *fname, const char *dset,const char *attr, int diff, int is_file_new); -static void test_data_nocomparables (const char *fname, int diff); -static void test_objs_nocomparables (const char *fname1, const char *fname2); -static void test_objs_strings (const char *fname, const char *fname2); +static void test_comps_array(const char *fname, const char *dset, + const char *attr, int diff, int is_file_new); +static void test_comps_vlen(const char *fname, const char *dset, + const char *attr, int diff, int is_file_new); +static void test_comps_array_vlen(const char *fname, const char *dset, + const char *attr, int diff, int is_file_new); +static void test_comps_vlen_arry(const char *fname, const char *dset, + const char *attr, int diff, int is_file_new); +static void test_data_nocomparables(const char *fname, int diff); +static void test_objs_nocomparables(const char *fname1, const char *fname2); +static void test_objs_strings(const char *fname, const char *fname2); /* called by test_attributes() and test_datasets() */ -static void write_attr_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs); -static void write_dset_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs); -static void gen_datareg(hid_t fid,int make_diffs); +static void write_attr_strings(hid_t loc_id, const char* dset_name, hid_t fid, int make_diffs); +static void write_attr_in(hid_t loc_id, const char* dset_name, hid_t fid, int make_diffs); +static void write_dset_in(hid_t loc_id, const char* dset_name, hid_t fid, int make_diffs); +static void gen_datareg(hid_t fid, int make_diffs); /* utilities */ -static int write_attr(hid_t loc_id,int rank,hsize_t *dims,const char *name,hid_t tid,void *buf); -static int write_dset(hid_t loc_id,int rank,hsize_t *dims,const char *name,hid_t tid,void *buf); - +static int write_attr(hid_t loc_id, int rank, hsize_t *dims, const char *name, hid_t tid, void *buf); +static int write_dset(hid_t loc_id, int rank, hsize_t *dims, const char *name, hid_t tid, void *buf); /*------------------------------------------------------------------------- -* Function: main -* -* Purpose: main program -* -*------------------------------------------------------------------------- -*/ + * Function: main + * + * Purpose: main program + * + *------------------------------------------------------------------------- + */ int main(void) { test_basic(FILE1, FILE2, FILE11); - test_types (FILE3); + test_types(FILE3); test_datatypes(FILE4); /* generate 2 files, the second call creates a similar file with differences */ - test_attributes(FILE5,0); - test_attributes(FILE6,1); + test_attributes(FILE5, 0); + test_attributes(FILE6, 1); + /* generate file with string datatypes swapped */ + test_attributes(FILE6a, 2); /* test attributes with verbose level */ test_attributes_verbose_level(ATTR_VERBOSE_LEVEL_FILE1, ATTR_VERBOSE_LEVEL_FILE2); /* generate 2 files, the second call creates a similar file with differences */ - test_datasets(FILE7,0); - test_datasets(FILE8,1); - test_datasets(FILE8A,2); + test_datasets(FILE7, 0); + test_datasets(FILE8, 1); + test_datasets(FILE8A, 2); /* generate 2 files, the second call creates a similar file with differences */ - test_hyperslab(FILE9,0); - test_hyperslab(FILE10,1); + test_hyperslab(FILE9, 0); + test_hyperslab(FILE10, 1); test_link_name(FILE12); @@ -212,8 +218,8 @@ int main(void) test_ext2soft_links(FILE17, FILE18); /* generate 2 files, the second call creates a similar file with differences */ - test_special_datasets(FILE19,0); - test_special_datasets(FILE20,1); + test_special_datasets(FILE19, 0); + test_special_datasets(FILE20, 1); test_dangle_links(DANGLE_LINK_FILE1, DANGLE_LINK_FILE2); @@ -229,34 +235,34 @@ int main(void) test_comp_vlen_strings(COMP_VL_STRS_FILE, "group_copy", 0); /* diff when invalid enum values are present. - * This will probably grow to involve more extensive testing of - * enums so it has been given its own test file and test (apart - * from the basic type testing). - */ + * This will probably grow to involve more extensive testing of + * enums so it has been given its own test file and test (apart + * from the basic type testing). + */ test_enums(ENUM_INVALID_VALUES); /* ------------------------------------------------- - * Create test files with dataset and attribute with container types - * (array, vlen) with multiple nested compound types. - */ + * Create test files with dataset and attribute with container types + * (array, vlen) with multiple nested compound types. + */ /* file1 */ - test_comps_array(COMPS_COMPLEX1,"dset1", "attr1", 0, 1); - test_comps_vlen(COMPS_COMPLEX1,"dset2", "attr2", 0, 0); - test_comps_array_vlen(COMPS_COMPLEX1,"dset3", "attr3", 0, 0); - test_comps_vlen_arry(COMPS_COMPLEX1,"dset4", "attr4", 0, 0); + test_comps_array(COMPS_COMPLEX1, "dset1", "attr1", 0, 1); + test_comps_vlen(COMPS_COMPLEX1, "dset2", "attr2", 0, 0); + test_comps_array_vlen(COMPS_COMPLEX1, "dset3", "attr3", 0, 0); + test_comps_vlen_arry(COMPS_COMPLEX1, "dset4", "attr4", 0, 0); /* file2 */ - test_comps_array(COMPS_COMPLEX2,"dset1", "attr1", 5, 1); - test_comps_vlen(COMPS_COMPLEX2,"dset2", "attr2",5, 0); - test_comps_array_vlen(COMPS_COMPLEX2,"dset3", "attr3", 5, 0); - test_comps_vlen_arry(COMPS_COMPLEX2,"dset4", "attr4", 5, 0); + test_comps_array(COMPS_COMPLEX2, "dset1", "attr1", 5, 1); + test_comps_vlen(COMPS_COMPLEX2, "dset2", "attr2", 5, 0); + test_comps_array_vlen(COMPS_COMPLEX2, "dset3", "attr3", 5, 0); + test_comps_vlen_arry(COMPS_COMPLEX2, "dset4", "attr4", 5, 0); /*------------------------------------------------- - * Create test files with non-comparable dataset and attributes with - * comparable datasets and attributes. All the comparables should display - * differences. - */ - test_data_nocomparables(NON_COMPARBLES1,0); - test_data_nocomparables(NON_COMPARBLES2,5); + * Create test files with non-comparable dataset and attributes with + * comparable datasets and attributes. All the comparables should display + * differences. + */ + test_data_nocomparables(NON_COMPARBLES1, 0); + test_data_nocomparables(NON_COMPARBLES2, 5); /* common objects (same name) with different object types. HDFFV-7644 */ test_objs_nocomparables(NON_COMPARBLES1, NON_COMPARBLES2); @@ -268,28 +274,28 @@ int main(void) } /*------------------------------------------------------------------------- -* Function: test_basic -* -* Purpose: Create basic test files, first two contains different data, the -* third one is just an empty file. -* -*------------------------------------------------------------------------- -*/ + * Function: test_basic + * + * Purpose: Create basic test files, first two contains different data, the + * third one is just an empty file. + * + *------------------------------------------------------------------------- + */ static int test_basic(const char *fname1, const char *fname2, const char *fname3) { - hid_t fid1, fid2; - hid_t gid1, gid2, gid3; + hid_t fid1 = -1, fid2 = -1; + hid_t gid1 = -1, gid2 = -1, gid3 = -1; hsize_t dims1[1] = { 6 }; - hsize_t dims2[2] = { 3,2 }; + hsize_t dims2[2] = { 3, 2 }; /* create the empty file */ - if ((fid1=H5Fcreate(fname3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0){ + if ((fid1 = H5Fcreate(fname3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) { fprintf(stderr, "empty file (%s) creation failed.\n", fname3); goto out; } - if (H5Fclose(fid1) < 0){ + if (H5Fclose(fid1) < 0) { fprintf(stderr, "empty file (%s) close failed.\n", fname3); goto out; } @@ -299,9 +305,9 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) *------------------------------------------------------------------------- */ - if (( fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0 ) + if ((fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if (( fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0 ) + if ((fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; /*------------------------------------------------------------------------- @@ -324,16 +330,20 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) */ { - double data1[3][2] = {{ 1.0F, 1.0F}, { 1.00F, 1.000F}, { 0.0F, 0.0F}}; - double data2[3][2] = {{ 0.0F, 1.1F}, { 1.01F, 1.001F}, { 0.0F, 1.0F}}; - double data3[3][2] = {{100.0F, 100.0F}, {100.00F, 100.000F}, {100.0F, 100.0F}}; - double data4[3][2] = {{105.0F, 120.0F}, {160.00F, 95.000F}, { 80.0F, 40.0F}}; + double data1[3][2] = + { { 1.0F, 1.0F }, { 1.00F, 1.000F }, { 0.0F, 0.0F } }; + double data2[3][2] = + { { 0.0F, 1.1F }, { 1.01F, 1.001F }, { 0.0F, 1.0F } }; + double data3[3][2] = { { 100.0F, 100.0F }, { 100.00F, 100.000F }, { + 100.0F, 100.0F } }; + double data4[3][2] = { { 105.0F, 120.0F }, { 160.00F, 95.000F }, { + 80.0F, 40.0F } }; - write_dset(gid1,2,dims2,"dset1",H5T_NATIVE_DOUBLE,data1); - write_dset(gid2,2,dims2,"dset2",H5T_NATIVE_DOUBLE,data2); - write_dset(gid1,2,dims2,"dset3",H5T_NATIVE_DOUBLE,data3); - write_dset(gid2,2,dims2,"dset4",H5T_NATIVE_DOUBLE,data4); - write_dset(gid2,2,dims2,"dset1",H5T_NATIVE_DOUBLE,data2); + write_dset(gid1, 2, dims2, "dset1", H5T_NATIVE_DOUBLE, data1); + write_dset(gid2, 2, dims2, "dset2", H5T_NATIVE_DOUBLE, data2); + write_dset(gid1, 2, dims2, "dset3", H5T_NATIVE_DOUBLE, data3); + write_dset(gid2, 2, dims2, "dset4", H5T_NATIVE_DOUBLE, data4); + write_dset(gid2, 2, dims2, "dset1", H5T_NATIVE_DOUBLE, data2); } /*------------------------------------------------------------------------- @@ -342,11 +352,11 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) *------------------------------------------------------------------------- */ { - int data5[3][2] = {{100,100},{100,0},{0,100}}; - int data6[3][2] = {{120,80}, {0,100},{0,50}}; + int data5[3][2] = { { 100, 100 }, { 100, 0 }, { 0, 100 } }; + int data6[3][2] = { { 120, 80 }, { 0, 100 }, { 0, 50 } }; - write_dset(gid1,2,dims2,"dset5",H5T_NATIVE_INT,data5); - write_dset(gid1,2,dims2,"dset6",H5T_NATIVE_INT,data6); + write_dset(gid1, 2, dims2, "dset5", H5T_NATIVE_INT, data5); + write_dset(gid1, 2, dims2, "dset6", H5T_NATIVE_INT, data6); } @@ -356,11 +366,12 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) *------------------------------------------------------------------------- */ { - unsigned long long data7[3][2] = {{100,100},{100,0},{0,100}}; - unsigned long long data8[3][2] = {{120,80}, {0,100},{0,50}}; + unsigned long long data7[3][2] = + { { 100, 100 }, { 100, 0 }, { 0, 100 } }; + unsigned long long data8[3][2] = { { 120, 80 }, { 0, 100 }, { 0, 50 } }; - write_dset(gid1,2,dims2,"dset7",H5T_NATIVE_ULLONG,data7); - write_dset(gid1,2,dims2,"dset8",H5T_NATIVE_ULLONG,data8); + write_dset(gid1, 2, dims2, "dset7", H5T_NATIVE_ULLONG, data7); + write_dset(gid1, 2, dims2, "dset8", H5T_NATIVE_ULLONG, data8); } @@ -378,45 +389,47 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) *------------------------------------------------------------------------- */ { - double data9[3][2] = {{100.0F, 100.0F}, {100.0F, 0.0F}, {0.0F, 100.0F}}; - double data10[3][2] ={{120.0F, 80.0F}, { 0.0F, 100.0F}, {0.0F, 50.0F}}; + double data9[3][2] = { { 100.0F, 100.0F }, { 100.0F, 0.0F }, { 0.0F, + 100.0F } }; + double data10[3][2] = { { 120.0F, 80.0F }, { 0.0F, 100.0F }, { 0.0F, + 50.0F } }; - write_dset(gid1,2,dims2,"dset9",H5T_NATIVE_DOUBLE,data9); - write_dset(gid1,2,dims2,"dset10",H5T_NATIVE_DOUBLE,data10); + write_dset(gid1, 2, dims2, "dset9", H5T_NATIVE_DOUBLE, data9); + write_dset(gid1, 2, dims2, "dset10", H5T_NATIVE_DOUBLE, data10); } - /*------------------------------------------------------------------------- * test floating point comparison *------------------------------------------------------------------------- */ { /* epsilon = 0.0000001 = 1e-7 - * system epsilon for float : FLT_EPSILON = 1.19209E-07 - */ - float data11[3][2] ={{0.000000f,0.0000001f},{0.0000001f, 0.00000022f},{0.0000001f,0.0000001f}}; - float data12[3][2] ={{0.000000f,0.0000002f},{0.0000003f,0.0000001f},{0.000000f,0.0000001f}}; + * system epsilon for float : FLT_EPSILON = 1.19209E-07 + */ + float data11[3][2] = { { 0.000000f, 0.0000001f }, { 0.0000001f, + 0.00000022f }, { 0.0000001f, 0.0000001f } }; + float data12[3][2] = { { 0.000000f, 0.0000002f }, { 0.0000003f, + 0.0000001f }, { 0.000000f, 0.0000001f } }; /* epsilon = 0.0000000000000001 = 1e-16 - * system epsilon for double : DBL_EPSILON = 2.22045E-16 - */ - double data13[3][2] ={ - {H5_DOUBLE(0.0000000000000000), H5_DOUBLE(0.0000000000000001)}, - {H5_DOUBLE(0.0000000000000001), H5_DOUBLE(0.0000000000000000)}, - {H5_DOUBLE(0.00000000000000033), H5_DOUBLE(0.0000000000000001)}}; - double data14[3][2] ={ - {H5_DOUBLE(0.0000000000000000), H5_DOUBLE(0.0000000000000004)}, - {H5_DOUBLE(0.0000000000000002), H5_DOUBLE(0.0000000000000001)}, - {H5_DOUBLE(0.0000000000000001), H5_DOUBLE(0.00000000000000000)}}; + * system epsilon for double : DBL_EPSILON = 2.22045E-16 + */ + double data13[3][2] = { { H5_DOUBLE(0.0000000000000000), H5_DOUBLE( + 0.0000000000000001) }, { H5_DOUBLE(0.0000000000000001), + H5_DOUBLE(0.0000000000000000) }, { H5_DOUBLE( + 0.00000000000000033), H5_DOUBLE(0.0000000000000001) } }; + double data14[3][2] = { { H5_DOUBLE(0.0000000000000000), H5_DOUBLE( + 0.0000000000000004) }, { H5_DOUBLE(0.0000000000000002), + H5_DOUBLE(0.0000000000000001) }, { H5_DOUBLE( + 0.0000000000000001), H5_DOUBLE(0.00000000000000000) } }; - write_dset(gid1,2,dims2,"fp1",H5T_NATIVE_FLOAT,data11); - write_dset(gid1,2,dims2,"fp2",H5T_NATIVE_FLOAT,data12); - write_dset(gid1,2,dims2,"d1",H5T_NATIVE_DOUBLE,data13); - write_dset(gid1,2,dims2,"d2",H5T_NATIVE_DOUBLE,data14); + write_dset(gid1, 2, dims2, "fp1", H5T_NATIVE_FLOAT, data11); + write_dset(gid1, 2, dims2, "fp2", H5T_NATIVE_FLOAT, data12); + write_dset(gid1, 2, dims2, "d1", H5T_NATIVE_DOUBLE, data13); + write_dset(gid1, 2, dims2, "d2", H5T_NATIVE_DOUBLE, data14); } - #if H5_SIZEOF_LONG_DOUBLE !=0 { @@ -425,15 +438,13 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) *------------------------------------------------------------------------- */ - long double data15[3][2] ={{1.0L,1.0L},{1.0L,1.0L},{1.0L,1.0L}}; + long double data15[3][2] = { {1.0L,1.0L}, {1.0L,1.0L}, {1.0L,1.0L}}; write_dset(gid1,2,dims2,"ld",H5T_NATIVE_LDOUBLE,data15); } #endif - - /*------------------------------------------------------------------------- * NaNs in H5T_NATIVE_FLOAT *------------------------------------------------------------------------- @@ -443,22 +454,22 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) float data15[6]; float data16[6]; - data15[0] = (float)HDsqrt(-1.0F); + data15[0] = (float) HDsqrt(-1.0F); data15[1] = 1.0F; - data15[2] = (float)HDsqrt(-1.0F); + data15[2] = (float) HDsqrt(-1.0F); data15[3] = 1.0F; data15[4] = 1.0F; data15[5] = 1.0F; - data16[0] = (float)HDsqrt(-1.0F); - data16[1] = (float)HDsqrt(-1.0F); + data16[0] = (float) HDsqrt(-1.0F); + data16[1] = (float) HDsqrt(-1.0F); data16[2] = 1.0F; data16[3] = 1.0F; data16[4] = 1.0F; data16[5] = 1.0F; - write_dset(gid1,1,dims1,"fp15",H5T_NATIVE_FLOAT,data15); - write_dset(gid1,1,dims1,"fp16",H5T_NATIVE_FLOAT,data16); + write_dset(gid1, 1, dims1, "fp15", H5T_NATIVE_FLOAT, data15); + write_dset(gid1, 1, dims1, "fp16", H5T_NATIVE_FLOAT, data16); } @@ -485,29 +496,29 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) data18[4] = 1.0F; data18[5] = 1.0F; - write_dset(gid1,1,dims1,"fp17",H5T_NATIVE_DOUBLE,data17); - write_dset(gid1,1,dims1,"fp18",H5T_NATIVE_DOUBLE,data18); - write_dset(gid1,1,dims1,"fp18_COPY",H5T_NATIVE_DOUBLE,data18); + write_dset(gid1, 1, dims1, "fp17", H5T_NATIVE_DOUBLE, data17); + write_dset(gid1, 1, dims1, "fp18", H5T_NATIVE_DOUBLE, data18); + write_dset(gid1, 1, dims1, "fp18_COPY", H5T_NATIVE_DOUBLE, data18); } /*------------------------------------------------------------------------ - * INFINITY values - *------------------------------------------------------------------------ - */ + * INFINITY values + *------------------------------------------------------------------------ + */ { - float data19[6]; + float data19[6]; double data20[6]; - data19[0] = data19[1] = data19[2] = (float)HDlog(0.0F); - data19[3] = data19[4] = data19[5] = (float)-HDlog(0.0F); + data19[0] = data19[1] = data19[2] = (float) HDlog(0.0F); + data19[3] = data19[4] = data19[5] = (float) -HDlog(0.0F); data20[0] = data20[1] = data20[2] = HDlog(0.0F); data20[3] = data20[4] = data20[5] = -HDlog(0.0F); - write_dset(gid1,1,dims1,"fp19",H5T_NATIVE_FLOAT,data19); - write_dset(gid1,1,dims1,"fp19_COPY",H5T_NATIVE_FLOAT,data19); - write_dset(gid1,1,dims1,"fp20",H5T_NATIVE_DOUBLE,data20); - write_dset(gid1,1,dims1,"fp20_COPY",H5T_NATIVE_DOUBLE,data20); + write_dset(gid1, 1, dims1, "fp19", H5T_NATIVE_FLOAT, data19); + write_dset(gid1, 1, dims1, "fp19_COPY", H5T_NATIVE_FLOAT, data19); + write_dset(gid1, 1, dims1, "fp20", H5T_NATIVE_DOUBLE, data20); + write_dset(gid1, 1, dims1, "fp20_COPY", H5T_NATIVE_DOUBLE, data20); } /*------------------------------------------------------------------------- @@ -515,105 +526,97 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) *------------------------------------------------------------------------- */ { - typedef struct cmp1_t - { + typedef struct cmp1_t { double d; - float f; + float f; } cmp1_t; - cmp1_t buf1[2]; - cmp1_t buf2[2]; - hsize_t dims[1] = {2}; - size_t type_size; - hid_t tid; + cmp1_t buf1[2]; + cmp1_t buf2[2]; + hsize_t dims[1] = { 2 }; + size_t type_size; + hid_t tid; buf1[0].d = HDsqrt(-1.0F); - buf1[0].f = (float)HDsqrt(-1.0F); + buf1[0].f = (float) HDsqrt(-1.0F); buf2[0].d = HDsqrt(-1.0F); - buf2[0].f = (float)HDsqrt(-1.0F); + buf2[0].f = (float) HDsqrt(-1.0F); buf1[1].d = HDsqrt(-1.0F); - buf1[1].f = (float)HDsqrt(-1.0F); + buf1[1].f = (float) HDsqrt(-1.0F); buf2[1].d = 0.0F; buf2[1].f = 0.0F; - type_size = sizeof( cmp1_t ); - tid = H5Tcreate (H5T_COMPOUND, type_size ); - H5Tinsert(tid, "d", HOFFSET( cmp1_t, d ), H5T_NATIVE_DOUBLE ); - H5Tinsert(tid, "f", HOFFSET( cmp1_t, f ), H5T_NATIVE_FLOAT ); - write_dset(gid1,1,dims,"dset11",tid,buf1); - write_dset(gid1,1,dims,"dset12",tid,buf2); + type_size = sizeof(cmp1_t); + tid = H5Tcreate(H5T_COMPOUND, type_size); + H5Tinsert(tid, "d", HOFFSET(cmp1_t, d), H5T_NATIVE_DOUBLE); + H5Tinsert(tid, "f", HOFFSET(cmp1_t, f), H5T_NATIVE_FLOAT); + write_dset(gid1, 1, dims, "dset11", tid, buf1); + write_dset(gid1, 1, dims, "dset12", tid, buf2); H5Tclose(tid); - } /* not comparable objects */ { - typedef struct cmp1_t - { + typedef struct cmp1_t { double d; - int i; + int i; } cmp1_t; - typedef struct cmp2_t - { - int i; + typedef struct cmp2_t { + int i; double d; } cmp2_t; - typedef struct cmp3_t - { + typedef struct cmp3_t { int i; } cmp3_t; - double data2[6] = {0.0F, 0.0F, 0.0F, 0.0F, 0.0F, 0.0F}; - int data3[6] = {0,0,0,0,0,0}; - int data4[3][2] = {{0,0},{0,0},{0,0}}; - int data5[2][2] = {{0,0},{0,0}}; - unsigned int data6[3][2] = {{0,0},{0,0},{0,0}}; - cmp1_t data7[1] = {{1.0f, 2}}; - cmp2_t data8[1] = {{1, 2.0f}}; - hsize_t dims3[2] = {2, 2}; - hsize_t dims4[1] = {1}; - size_t type_size; - hid_t tid; - - - - write_dset(gid3,1,dims1,"dset1",H5T_NATIVE_DOUBLE,NULL); - write_dset(gid3,1,dims1,"dset2",H5T_NATIVE_DOUBLE,data2); - write_dset(gid3,1,dims1,"dset3",H5T_NATIVE_INT,data3); - write_dset(gid3,2,dims2,"dset4",H5T_NATIVE_INT,data4); - write_dset(gid3,2,dims3,"dset5",H5T_NATIVE_INT,data5); - write_dset(gid3,2,dims2,"dset6",H5T_NATIVE_UINT,data6); + double data2[6] = { 0.0F, 0.0F, 0.0F, 0.0F, 0.0F, 0.0F }; + int data3[6] = { 0, 0, 0, 0, 0, 0 }; + int data4[3][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 } }; + int data5[2][2] = { { 0, 0 }, { 0, 0 } }; + unsigned int data6[3][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 } }; + cmp1_t data7[1] = { { 1.0f, 2 } }; + cmp2_t data8[1] = { { 1, 2.0f } }; + hsize_t dims3[2] = { 2, 2 }; + hsize_t dims4[1] = { 1 }; + size_t type_size; + hid_t tid; + + write_dset(gid3, 1, dims1, "dset1", H5T_NATIVE_DOUBLE, NULL); + write_dset(gid3, 1, dims1, "dset2", H5T_NATIVE_DOUBLE, data2); + write_dset(gid3, 1, dims1, "dset3", H5T_NATIVE_INT, data3); + write_dset(gid3, 2, dims2, "dset4", H5T_NATIVE_INT, data4); + write_dset(gid3, 2, dims3, "dset5", H5T_NATIVE_INT, data5); + write_dset(gid3, 2, dims2, "dset6", H5T_NATIVE_UINT, data6); /* case of compound with different type members */ - type_size = sizeof( cmp1_t ); - tid = H5Tcreate (H5T_COMPOUND, type_size ); - H5Tinsert(tid, "d", HOFFSET( cmp1_t, d ), H5T_NATIVE_DOUBLE ); - H5Tinsert(tid, "i", HOFFSET( cmp1_t, i ), H5T_NATIVE_INT ); - write_dset(gid3,1,dims4,"dset7",tid,data7); + type_size = sizeof(cmp1_t); + tid = H5Tcreate(H5T_COMPOUND, type_size); + H5Tinsert(tid, "d", HOFFSET(cmp1_t, d), H5T_NATIVE_DOUBLE); + H5Tinsert(tid, "i", HOFFSET(cmp1_t, i), H5T_NATIVE_INT); + write_dset(gid3, 1, dims4, "dset7", tid, data7); H5Tclose(tid); - type_size = sizeof( cmp2_t ); - tid = H5Tcreate (H5T_COMPOUND, type_size ); - H5Tinsert(tid, "i", HOFFSET( cmp2_t, i ), H5T_NATIVE_INT ); - H5Tinsert(tid, "d", HOFFSET( cmp2_t, d ), H5T_NATIVE_DOUBLE ); - write_dset(gid3,1,dims4,"dset8",tid,data8); + type_size = sizeof(cmp2_t); + tid = H5Tcreate(H5T_COMPOUND, type_size); + H5Tinsert(tid, "i", HOFFSET(cmp2_t, i), H5T_NATIVE_INT); + H5Tinsert(tid, "d", HOFFSET(cmp2_t, d), H5T_NATIVE_DOUBLE); + write_dset(gid3, 1, dims4, "dset8", tid, data8); H5Tclose(tid); /* case of compound with different number of members */ - type_size = sizeof( cmp3_t ); - tid = H5Tcreate (H5T_COMPOUND, type_size ); - H5Tinsert(tid, "i", HOFFSET( cmp2_t, i ), H5T_NATIVE_INT ); - write_dset(gid3,1,dims4,"dset9",tid,NULL); + type_size = sizeof(cmp3_t); + tid = H5Tcreate(H5T_COMPOUND, type_size); + H5Tinsert(tid, "i", HOFFSET(cmp2_t, i), H5T_NATIVE_INT); + write_dset(gid3, 1, dims4, "dset9", tid, NULL); H5Tclose(tid); } - /*------------------------------------------------------------------------- * close *------------------------------------------------------------------------- @@ -630,46 +633,43 @@ out: return FAIL; } - /*------------------------------------------------------------------------- -* Function: test_types -* -* Purpose: Compare different HDF5 object & link types: -* H5G_DATASET, H5G_TYPE, H5G_GROUP, H5G_LINK, H5G_UDLINK -* -*------------------------------------------------------------------------- -*/ + * Function: test_types + * + * Purpose: Compare different HDF5 object & link types: + * H5G_DATASET, H5G_TYPE, H5G_GROUP, H5G_LINK, H5G_UDLINK + * + *------------------------------------------------------------------------- + */ static int test_types(const char *fname) { - hid_t fid1; - hid_t gid1; - hid_t gid2; - hid_t tid1; - hid_t tid2; - herr_t status; - hsize_t dims[1]={1}; - typedef struct s1_t - { - int a; - float b; + hid_t fid1 = -1; + hid_t gid1 = -1; + hid_t gid2 = -1; + hid_t tid1 = -1; + hid_t tid2 = -1; + herr_t status; + hsize_t dims[1] = { 1 }; + typedef struct s1_t { + int a; + float b; } s1_t; - typedef struct s2_t - { - int a; + typedef struct s2_t { + int a; } s2_t; /*------------------------------------------------------------------------- * Create one file *------------------------------------------------------------------------- */ - fid1 = H5Fcreate (fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + fid1 = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /*------------------------------------------------------------------------- * H5G_DATASET *------------------------------------------------------------------------- */ - write_dset(fid1,1,dims,"dset",H5T_NATIVE_INT,0); + write_dset(fid1, 1, dims, "dset", H5T_NATIVE_INT, 0); /*------------------------------------------------------------------------- * H5G_GROUP @@ -711,7 +711,7 @@ int test_types(const char *fname) */ H5Lcreate_external("filename", "objname", fid1, "ext_link", H5P_DEFAULT, H5P_DEFAULT); H5Lregister(UD_link_class); - H5Lcreate_ud(fid1, "ud_link", (H5L_type_t)MY_LINKCLASS, NULL, (size_t)0, H5P_DEFAULT, H5P_DEFAULT); + H5Lcreate_ud(fid1, "ud_link", (H5L_type_t) MY_LINKCLASS, NULL, (size_t) 0, H5P_DEFAULT, H5P_DEFAULT); /*------------------------------------------------------------------------- * Close @@ -721,195 +721,192 @@ int test_types(const char *fname) return status; } - /* -# ############################################################################## -# # not comparable types -# ############################################################################## + # ############################################################################## + # # not comparable types + # ############################################################################## -# 2.0 -TOOLTEST h5diff_20.txt file3.h5 file3.h5 -v dset g1 + # 2.0 + TOOLTEST h5diff_20.txt file3.h5 file3.h5 -v dset g1 -# 2.1 -TOOLTEST h5diff_21.txt file3.h5 file3.h5 -v dset l1 + # 2.1 + TOOLTEST h5diff_21.txt file3.h5 file3.h5 -v dset l1 -# 2.2 -TOOLTEST h5diff_22.txt file3.h5 file3.h5 -v dset t1 + # 2.2 + TOOLTEST h5diff_22.txt file3.h5 file3.h5 -v dset t1 -# ############################################################################## -# # compare groups, types, links (no differences and differences) -# ############################################################################## + # ############################################################################## + # # compare groups, types, links (no differences and differences) + # ############################################################################## -# 2.3 -TOOLTEST h5diff_23.txt file3.h5 file3.h5 -v g1 g1 + # 2.3 + TOOLTEST h5diff_23.txt file3.h5 file3.h5 -v g1 g1 -# 2.4 -TOOLTEST h5diff_24.txt file3.h5 file3.h5 -v t1 t1 + # 2.4 + TOOLTEST h5diff_24.txt file3.h5 file3.h5 -v t1 t1 -# 2.5 -TOOLTEST h5diff_25.txt file3.h5 file3.h5 -v l1 l1 + # 2.5 + TOOLTEST h5diff_25.txt file3.h5 file3.h5 -v l1 l1 -# 2.6 -TOOLTEST h5diff_26.txt file3.h5 file3.h5 -v g1 g2 + # 2.6 + TOOLTEST h5diff_26.txt file3.h5 file3.h5 -v g1 g2 -# 2.7 -TOOLTEST h5diff_27.txt file3.h5 file3.h5 -v t1 t2 + # 2.7 + TOOLTEST h5diff_27.txt file3.h5 file3.h5 -v t1 t2 -# 2.8 -TOOLTEST h5diff_28.txt file3.h5 file3.h5 -v l1 l2 -*/ + # 2.8 + TOOLTEST h5diff_28.txt file3.h5 file3.h5 -v l1 l2 + */ /*------------------------------------------------------------------------- -* Function: test_datatypes -* -* Purpose: test dataset datatypes -* -*------------------------------------------------------------------------- -*/ + * Function: test_datatypes + * + * Purpose: test dataset datatypes + * + *------------------------------------------------------------------------- + */ static int test_datatypes(const char *fname) { - - hid_t fid1; - hid_t dset; - hsize_t dims[2]={3,2}; - herr_t status; - char buf1a[3][2] = {{1,1},{1,1},{1,1}}; - char buf1b[3][2] = {{1,1},{3,4},{5,6}}; - short buf2a[3][2] = {{1,1},{1,1},{1,1}}; - short buf2b[3][2] = {{1,1},{3,4},{5,6}}; - int buf3a[3][2] = {{1,1},{1,1},{1,1}}; - int buf3b[3][2] = {{1,1},{3,4},{5,6}}; - long buf4a[3][2] = {{1,1},{1,1},{1,1}}; - long buf4b[3][2] = {{1,1},{3,4},{5,6}}; - float buf5a[3][2] = {{1.0F, 1.0F}, {1.0F, 1.0F}, {1.0F, 1.0F}}; - float buf5b[3][2] = {{1.0F, 1.0F}, {3.0F, 4.0F}, {5.0F, 6.0F}}; - double buf6a[3][2] = {{1.0F, 1.0F}, {1.0F, 1.0F}, {1.0F, 1.0F}}; - double buf6b[3][2] = {{1.0F, 1.0F}, {3.0F, 4.0F}, {5.0F, 6.0F}}; + hid_t fid1 = -1; + hid_t dset = -1; + hsize_t dims[2] = { 3, 2 }; + herr_t status; + char buf1a[3][2] = { { 1, 1 }, { 1, 1 }, { 1, 1 } }; + char buf1b[3][2] = { { 1, 1 }, { 3, 4 }, { 5, 6 } }; + short buf2a[3][2] = { { 1, 1 }, { 1, 1 }, { 1, 1 } }; + short buf2b[3][2] = { { 1, 1 }, { 3, 4 }, { 5, 6 } }; + int buf3a[3][2] = { { 1, 1 }, { 1, 1 }, { 1, 1 } }; + int buf3b[3][2] = { { 1, 1 }, { 3, 4 }, { 5, 6 } }; + long buf4a[3][2] = { { 1, 1 }, { 1, 1 }, { 1, 1 } }; + long buf4b[3][2] = { { 1, 1 }, { 3, 4 }, { 5, 6 } }; + float buf5a[3][2] = { { 1.0F, 1.0F }, { 1.0F, 1.0F }, { 1.0F, 1.0F } }; + float buf5b[3][2] = { { 1.0F, 1.0F }, { 3.0F, 4.0F }, { 5.0F, 6.0F } }; + double buf6a[3][2] = { { 1.0F, 1.0F }, { 1.0F, 1.0F }, { 1.0F, 1.0F } }; + double buf6b[3][2] = { { 1.0F, 1.0F }, { 3.0F, 4.0F }, { 5.0F, 6.0F } }; /*unsigned/signed test signed char -128 to 127 unsigned char 0 to 255 */ - char buf7a[3][2] = {{-1,-128},{-1,-1},{-1,-1}}; - unsigned char buf7b[3][2] = {{1,128},{1,1},{1,1}}; + char buf7a[3][2] = { { -1, -128 }, { -1, -1 }, { -1, -1 } }; + unsigned char buf7b[3][2] = { { 1, 128 }, { 1, 1 }, { 1, 1 } }; /* long long test */ - long long buf8a[3][2] = {{1,1},{1,1},{1,1}}; - long long buf8b[3][2] = {{1,1},{3,4},{5,6}}; - unsigned long long buf9a[3][2] = {{1,1},{1,1},{1,1}}; - unsigned long long buf9b[3][2] = {{1,1},{3,4},{5,6}}; + long long buf8a[3][2] = { { 1, 1 }, { 1, 1 }, { 1, 1 } }; + long long buf8b[3][2] = { { 1, 1 }, { 3, 4 }, { 5, 6 } }; + unsigned long long buf9a[3][2] = { { 1, 1 }, { 1, 1 }, { 1, 1 } }; + unsigned long long buf9b[3][2] = { { 1, 1 }, { 3, 4 }, { 5, 6 } }; - unsigned int buf10a[3][2] = {{UIMAX,1},{1,1},{1,1}}; - unsigned int buf10b[3][2] = {{UIMAX-1,1},{3,4},{5,6}}; - - unsigned short buf11a[3][2] = {{204,205},{2,3},{1,1}}; - unsigned int buf11b[3][2] = {{204,205},{2,3},{1,1}}; + unsigned int buf10a[3][2] = { { UIMAX, 1 }, { 1, 1 }, { 1, 1 } }; + unsigned int buf10b[3][2] = { { UIMAX - 1, 1 }, { 3, 4 }, { 5, 6 } }; + unsigned short buf11a[3][2] = { { 204, 205 }, { 2, 3 }, { 1, 1 } }; + unsigned int buf11b[3][2] = { { 204, 205 }, { 2, 3 }, { 1, 1 } }; /*------------------------------------------------------------------------- * Create a file *------------------------------------------------------------------------- */ - fid1 = H5Fcreate (fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + fid1 = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /*------------------------------------------------------------------------- * Check for different storage order. Give a warning if they are different *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset0a",H5T_STD_I16LE,buf2a); - write_dset(fid1,2,dims,"dset0b",H5T_STD_I32LE,buf3b); + write_dset(fid1, 2, dims, "dset0a", H5T_STD_I16LE, buf2a); + write_dset(fid1, 2, dims, "dset0b", H5T_STD_I32LE, buf3b); /*------------------------------------------------------------------------- * H5T_NATIVE_CHAR *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset1a",H5T_NATIVE_CHAR,buf1a); - write_dset(fid1,2,dims,"dset1b",H5T_NATIVE_CHAR,buf1b); + write_dset(fid1, 2, dims, "dset1a", H5T_NATIVE_CHAR, buf1a); + write_dset(fid1, 2, dims, "dset1b", H5T_NATIVE_CHAR, buf1b); /*------------------------------------------------------------------------- * H5T_NATIVE_SHORT *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset2a",H5T_NATIVE_SHORT,buf2a); - write_dset(fid1,2,dims,"dset2b",H5T_NATIVE_SHORT,buf2b); + write_dset(fid1, 2, dims, "dset2a", H5T_NATIVE_SHORT, buf2a); + write_dset(fid1, 2, dims, "dset2b", H5T_NATIVE_SHORT, buf2b); /*------------------------------------------------------------------------- * H5T_NATIVE_INT *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset3a",H5T_NATIVE_INT,buf3a); - write_dset(fid1,2,dims,"dset3b",H5T_NATIVE_INT,buf3b); + write_dset(fid1, 2, dims, "dset3a", H5T_NATIVE_INT, buf3a); + write_dset(fid1, 2, dims, "dset3b", H5T_NATIVE_INT, buf3b); /*------------------------------------------------------------------------- * H5T_NATIVE_LONG *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset4a",H5T_NATIVE_LONG,buf4a); - write_dset(fid1,2,dims,"dset4b",H5T_NATIVE_LONG,buf4b); + write_dset(fid1, 2, dims, "dset4a", H5T_NATIVE_LONG, buf4a); + write_dset(fid1, 2, dims, "dset4b", H5T_NATIVE_LONG, buf4b); /*------------------------------------------------------------------------- * H5T_NATIVE_FLOAT *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset5a",H5T_NATIVE_FLOAT,buf5a); - write_dset(fid1,2,dims,"dset5b",H5T_NATIVE_FLOAT,buf5b); + write_dset(fid1, 2, dims, "dset5a", H5T_NATIVE_FLOAT, buf5a); + write_dset(fid1, 2, dims, "dset5b", H5T_NATIVE_FLOAT, buf5b); /*------------------------------------------------------------------------- * H5T_NATIVE_DOUBLE *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset6a",H5T_NATIVE_DOUBLE,buf6a); - write_dset(fid1,2,dims,"dset6b",H5T_NATIVE_DOUBLE,buf6b); + write_dset(fid1, 2, dims, "dset6a", H5T_NATIVE_DOUBLE, buf6a); + write_dset(fid1, 2, dims, "dset6b", H5T_NATIVE_DOUBLE, buf6b); /*------------------------------------------------------------------------- * H5T_NATIVE_CHAR and H5T_NATIVE_UCHAR *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset7a",H5T_NATIVE_CHAR,buf7a); - write_dset(fid1,2,dims,"dset7b",H5T_NATIVE_UCHAR,buf7b); + write_dset(fid1, 2, dims, "dset7a", H5T_NATIVE_CHAR, buf7a); + write_dset(fid1, 2, dims, "dset7b", H5T_NATIVE_UCHAR, buf7b); /*------------------------------------------------------------------------- * H5T_NATIVE_LLONG *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset8a",H5T_NATIVE_LLONG,buf8a); - write_dset(fid1,2,dims,"dset8b",H5T_NATIVE_LLONG,buf8b); + write_dset(fid1, 2, dims, "dset8a", H5T_NATIVE_LLONG, buf8a); + write_dset(fid1, 2, dims, "dset8b", H5T_NATIVE_LLONG, buf8b); /*------------------------------------------------------------------------- * H5T_NATIVE_ULLONG *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset9a",H5T_NATIVE_ULLONG,buf9a); - write_dset(fid1,2,dims,"dset9b",H5T_NATIVE_ULLONG,buf9b); + write_dset(fid1, 2, dims, "dset9a", H5T_NATIVE_ULLONG, buf9a); + write_dset(fid1, 2, dims, "dset9b", H5T_NATIVE_ULLONG, buf9b); /*------------------------------------------------------------------------- * H5T_NATIVE_INT *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset10a",H5T_NATIVE_UINT,buf10a); - write_dset(fid1,2,dims,"dset10b",H5T_NATIVE_UINT,buf10b); + write_dset(fid1, 2, dims, "dset10a", H5T_NATIVE_UINT, buf10a); + write_dset(fid1, 2, dims, "dset10b", H5T_NATIVE_UINT, buf10b); /*------------------------------------------------------------------------- * Same type class, different size *------------------------------------------------------------------------- */ - write_dset(fid1,2,dims,"dset11a",H5T_STD_U16LE,buf11a); - dset=H5Dopen2 (fid1, "dset11a", H5P_DEFAULT); - write_attr(dset,2,dims,"attr",H5T_STD_U16LE,buf11a); - H5Dclose (dset); + write_dset(fid1, 2, dims, "dset11a", H5T_STD_U16LE, buf11a); + dset = H5Dopen2(fid1, "dset11a", H5P_DEFAULT); + write_attr(dset, 2, dims, "attr", H5T_STD_U16LE, buf11a); + H5Dclose(dset); - write_dset(fid1,2,dims,"dset11b",H5T_STD_U32LE,buf11b); - dset=H5Dopen2 (fid1, "dset11b", H5P_DEFAULT); - write_attr(dset,2,dims,"attr",H5T_STD_U32LE,buf11b); - H5Dclose (dset); + write_dset(fid1, 2, dims, "dset11b", H5T_STD_U32LE, buf11b); + dset = H5Dopen2(fid1, "dset11b", H5P_DEFAULT); + write_attr(dset, 2, dims, "attr", H5T_STD_U32LE, buf11b); + H5Dclose(dset); /*------------------------------------------------------------------------- * Close @@ -920,59 +917,58 @@ int test_datatypes(const char *fname) } /* -# ############################################################################## -# # Dataset datatypes -# ############################################################################## + # ############################################################################## + # # Dataset datatypes + # ############################################################################## -# 5.0 -TOOLTEST h5diff_50.txt file4.h5 file4.h5 -v dset0a dset0b + # 5.0 + TOOLTEST h5diff_50.txt file4.h5 file4.h5 -v dset0a dset0b -# 5.1 -TOOLTEST h5diff_51.txt file4.h5 file4.h5 -v dset1a dset1b + # 5.1 + TOOLTEST h5diff_51.txt file4.h5 file4.h5 -v dset1a dset1b -# 5.2 -TOOLTEST h5diff_52.txt file4.h5 file4.h5 -v dset2a dset2b + # 5.2 + TOOLTEST h5diff_52.txt file4.h5 file4.h5 -v dset2a dset2b -# 5.3 -TOOLTEST h5diff_53.txt file4.h5 file4.h5 -v dset3a dset4b + # 5.3 + TOOLTEST h5diff_53.txt file4.h5 file4.h5 -v dset3a dset4b -# 5.4 -TOOLTEST h5diff_54.txt file4.h5 file4.h5 -v dset4a dset4b + # 5.4 + TOOLTEST h5diff_54.txt file4.h5 file4.h5 -v dset4a dset4b -# 5.5 -TOOLTEST h5diff_55.txt file4.h5 file4.h5 -v dset5a dset5b + # 5.5 + TOOLTEST h5diff_55.txt file4.h5 file4.h5 -v dset5a dset5b -# 5.6 -TOOLTEST h5diff_56.txt file4.h5 file4.h5 -v dset6a dset6b + # 5.6 + TOOLTEST h5diff_56.txt file4.h5 file4.h5 -v dset6a dset6b -# 5.7 -TOOLTEST h5diff_57.txt file4.h5 file4.h5 -v dset7a dset7b + # 5.7 + TOOLTEST h5diff_57.txt file4.h5 file4.h5 -v dset7a dset7b -# 5.8 (region reference) -TOOLTEST h5diff_58.txt file7.h5 file8.h5 -v refreg -*/ + # 5.8 (region reference) + TOOLTEST h5diff_58.txt file7.h5 file8.h5 -v refreg + */ /*------------------------------------------------------------------------- -* Function: test_attributes -* -* Purpose: test attributes -* -*------------------------------------------------------------------------- -*/ + * Function: test_attributes + * + * Purpose: test attributes + * + *------------------------------------------------------------------------- + */ static -int test_attributes(const char *file, - int make_diffs /* flag to modify data buffers */) +int test_attributes(const char *file, int make_diffs /* flag to modify data buffers */) { - hid_t fid; - hid_t did; - hid_t gid; - hid_t root_id; - hid_t sid; - hsize_t dims[1]={2}; - herr_t status; + hid_t fid = -1; + hid_t did = -1; + hid_t gid = -1; + hid_t root_id = -1; + hid_t sid = -1; + hsize_t dims[1] = { 2 }; + herr_t status; /* Create a file */ - if((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; /* Create a 1D dataset */ @@ -982,18 +978,23 @@ int test_attributes(const char *file, assert(status >= 0); /* Create groups */ - gid = H5Gcreate2(fid, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - root_id = H5Gopen2(fid, "/", H5P_DEFAULT); + gid = H5Gcreate2(fid, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + root_id = H5Gopen2(fid, "/", H5P_DEFAULT); /*------------------------------------------------------------------------- * write a series of attributes on the dataset, group, and root group *------------------------------------------------------------------------- */ - - write_attr_in(did,"dset",fid,make_diffs); - write_attr_in(gid,NULL,(hid_t)0,make_diffs); - write_attr_in(root_id,NULL,(hid_t)0,make_diffs); - + if (make_diffs > 1) { + write_attr_strings(did, "dset", fid, make_diffs); + write_attr_strings(gid, NULL, (hid_t) 0, make_diffs); + write_attr_strings(root_id, NULL, (hid_t) 0, make_diffs); + } + else { + write_attr_in(did, "dset", fid, make_diffs); + write_attr_in(gid, NULL, (hid_t) 0, make_diffs); + write_attr_in(root_id, NULL, (hid_t) 0, make_diffs); + } /* Close */ status = H5Dclose(did); @@ -1009,338 +1010,313 @@ int test_attributes(const char *file, return status; } - /*------------------------------------------------------------------------- -* Function: test_attributes_verbose_level -* -* Purpose: Cresting test files for testing attributes along with -* levels of verbos option -* -*------------------------------------------------------------------------- -*/ + * Function: test_attributes_verbose_level + * + * Purpose: Cresting test files for testing attributes along with + * levels of verbos option + * + *------------------------------------------------------------------------- + */ static int test_attributes_verbose_level(const char *fname1, const char *fname2) { - herr_t status = SUCCEED; - hid_t fid1 = -1, fid2 = -1; - hid_t f1_gid = -1, f2_gid = -1; - hid_t f1_gid2 = -1, f2_gid2 = -1; - hid_t f1_gid3 = -1, f2_gid3 = -1; - hid_t f1_gid4 = -1, f2_gid4 = -1; - hid_t f1_did = -1, f2_did = -1; - hid_t f1_sid = -1, f2_sid = -1; - hid_t f1_tid = -1, f2_tid = -1; + herr_t status = SUCCEED; + hid_t fid1 = -1, fid2 = -1; + hid_t f1_gid = -1, f2_gid = -1; + hid_t f1_gid2 = -1, f2_gid2 = -1; + hid_t f1_gid3 = -1, f2_gid3 = -1; + hid_t f1_gid4 = -1, f2_gid4 = -1; + hid_t f1_did = -1, f2_did = -1; + hid_t f1_sid = -1, f2_sid = -1; + hid_t f1_tid = -1, f2_tid = -1; /* dset */ - hsize_t dset_dims[1]={3}; - int dset_data[3] = {0,1,2}; + hsize_t dset_dims[1] = { 3 }; + int dset_data[3] = { 0, 1, 2 }; /* common attrs dim */ - hsize_t attr_dims[1]={2}; + hsize_t attr_dims[1] = { 2 }; /* file1 attr */ - int f1_attr_idata[2]= {1,2}; /* integer */ - float f1_attr_fdata[2]= {1.1F,2.2F}; /* float */ + int f1_attr_idata[2] = { 1, 2 }; /* integer */ + float f1_attr_fdata[2] = { 1.1F, 2.2F }; /* float */ /* file2 attr */ - int f2_attr_idata[2]= {2,3}; /* integer */ - float f2_attr_fdata[2]= {2.1F,3.2F}; /* float */ - + int f2_attr_idata[2] = { 2, 3 }; /* integer */ + float f2_attr_fdata[2] = { 2.1F, 3.2F }; /* float */ /*---------------------------------------------------------------------- * Create file1 *-----------------------------------------------------------------------*/ - if((fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) - { + if ((fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; } - /*---------------------------------- + /*---------------------------------- * Groups */ f1_gid = H5Gcreate2(fid1, "g", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (f1_gid < 0) - { + if (f1_gid < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; } f1_gid2 = H5Gcreate2(fid1, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (f1_gid2 < 0) - { + if (f1_gid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; } f1_gid3 = H5Gcreate2(fid1, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (f1_gid3 < 0) - { + if (f1_gid3 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; } f1_gid4 = H5Gcreate2(fid1, "g4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (f1_gid4 < 0) - { + if (f1_gid4 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } - /*---------------------------------- + /*---------------------------------- * Datasets */ f1_sid = H5Screate_simple(1, dset_dims, NULL); f1_did = H5Dcreate2(fid1, "dset", H5T_NATIVE_INT, f1_sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (f1_did == FAIL) - { + if (f1_did == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } status = H5Dwrite(f1_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1); status = FAIL; goto out; } - /*---------------------------------- + /*---------------------------------- * Named Datatype */ f1_tid = H5Tcopy(H5T_NATIVE_INT); status = H5Tcommit2(fid1, "ntype", f1_tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", fname1); status = FAIL; goto out; } - - - /*---------------------------------------------------------------------- * Create file2 *-----------------------------------------------------------------------*/ - if((fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) - { + if ((fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); status = FAIL; goto out; } - /*---------------------------------- + /*---------------------------------- * Groups */ f2_gid = H5Gcreate2(fid2, "g", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (f2_gid < 0) - { + if (f2_gid < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } f2_gid2 = H5Gcreate2(fid2, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (f2_gid2 < 0) - { + if (f2_gid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } f2_gid3 = H5Gcreate2(fid2, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (f2_gid3 < 0) - { + if (f2_gid3 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } f2_gid4 = H5Gcreate2(fid2, "g4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (f2_gid4 < 0) - { + if (f2_gid4 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } - /*---------------------------------- + /*---------------------------------- * Datasets */ f2_sid = H5Screate_simple(1, dset_dims, NULL); f2_did = H5Dcreate2(fid2, "dset", H5T_NATIVE_INT, f2_sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (f2_did == FAIL) - { + if (f2_did == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } status = H5Dwrite(f2_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname2); status = FAIL; goto out; } - /*---------------------------------- + /*---------------------------------- * Named Datatype */ f2_tid = H5Tcopy(H5T_NATIVE_INT); status = H5Tcommit2(fid2, "ntype", f2_tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", fname2); status = FAIL; goto out; } - /*---------------------------------- + /*---------------------------------- * CASE1 - Same attr number, all Same attr name * add attr to group */ - write_attr(f1_gid,1,attr_dims,"integer1",H5T_NATIVE_INT,f1_attr_idata); - write_attr(f1_gid,1,attr_dims,"float1",H5T_NATIVE_FLOAT,f1_attr_fdata); + write_attr(f1_gid, 1, attr_dims, "integer1", H5T_NATIVE_INT, f1_attr_idata); + write_attr(f1_gid, 1, attr_dims, "float1", H5T_NATIVE_FLOAT, f1_attr_fdata); - write_attr(f2_gid,1,attr_dims,"integer1",H5T_NATIVE_INT,f2_attr_idata); - write_attr(f2_gid,1,attr_dims,"float1",H5T_NATIVE_FLOAT,f2_attr_fdata); + write_attr(f2_gid, 1, attr_dims, "integer1", H5T_NATIVE_INT, f2_attr_idata); + write_attr(f2_gid, 1, attr_dims, "float1", H5T_NATIVE_FLOAT, f2_attr_fdata); - /*---------------------------------- + /*---------------------------------- * CASE2 - Same attr number, some Same attr name * add attr to dset */ - write_attr(f1_did,1,attr_dims,"integer1",H5T_NATIVE_INT,f1_attr_idata); - write_attr(f1_did,1,attr_dims,"float2",H5T_NATIVE_FLOAT,f1_attr_fdata); + write_attr(f1_did, 1, attr_dims, "integer1", H5T_NATIVE_INT, f1_attr_idata); + write_attr(f1_did, 1, attr_dims, "float2", H5T_NATIVE_FLOAT, f1_attr_fdata); - write_attr(f2_did,1,attr_dims,"integer1",H5T_NATIVE_INT,f2_attr_idata); - write_attr(f2_did,1,attr_dims,"float3",H5T_NATIVE_FLOAT,f2_attr_fdata); + write_attr(f2_did, 1, attr_dims, "integer1", H5T_NATIVE_INT, f2_attr_idata); + write_attr(f2_did, 1, attr_dims, "float3", H5T_NATIVE_FLOAT, f2_attr_fdata); - /*---------------------------------- + /*---------------------------------- * CASE3 - Same attr number, all different attr name * add attr to ntype */ - write_attr(f1_tid,1,attr_dims,"integer1",H5T_NATIVE_INT,f1_attr_idata); - write_attr(f1_tid,1,attr_dims,"float2",H5T_NATIVE_FLOAT,f1_attr_fdata); - write_attr(f1_tid,1,attr_dims,"float3",H5T_NATIVE_FLOAT,f1_attr_fdata); + write_attr(f1_tid, 1, attr_dims, "integer1", H5T_NATIVE_INT, f1_attr_idata); + write_attr(f1_tid, 1, attr_dims, "float2", H5T_NATIVE_FLOAT, f1_attr_fdata); + write_attr(f1_tid, 1, attr_dims, "float3", H5T_NATIVE_FLOAT, f1_attr_fdata); - write_attr(f2_tid,1,attr_dims,"integer4",H5T_NATIVE_INT,f2_attr_idata); - write_attr(f2_tid,1,attr_dims,"float5",H5T_NATIVE_FLOAT,f2_attr_fdata); - write_attr(f2_tid,1,attr_dims,"float6",H5T_NATIVE_FLOAT,f2_attr_fdata); + write_attr(f2_tid, 1, attr_dims, "integer4", H5T_NATIVE_INT, f2_attr_idata); + write_attr(f2_tid, 1, attr_dims, "float5", H5T_NATIVE_FLOAT, f2_attr_fdata); + write_attr(f2_tid, 1, attr_dims, "float6", H5T_NATIVE_FLOAT, f2_attr_fdata); - /*---------------------------------- + /*---------------------------------- * CASE4 - Different attr number, some same attr name (vs file2-g2) * add attr to g2 */ - write_attr(f1_gid2,1,attr_dims,"integer1",H5T_NATIVE_INT,f1_attr_idata); - write_attr(f1_gid2,1,attr_dims,"float2",H5T_NATIVE_FLOAT,f1_attr_fdata); - write_attr(f1_gid2,1,attr_dims,"float3",H5T_NATIVE_FLOAT,f1_attr_fdata); - - write_attr(f2_gid2,1,attr_dims,"integer1",H5T_NATIVE_INT,f2_attr_idata); - write_attr(f2_gid2,1,attr_dims,"float2",H5T_NATIVE_FLOAT,f2_attr_fdata); + write_attr(f1_gid2, 1, attr_dims, "integer1", H5T_NATIVE_INT, f1_attr_idata); + write_attr(f1_gid2, 1, attr_dims, "float2", H5T_NATIVE_FLOAT, f1_attr_fdata); + write_attr(f1_gid2, 1, attr_dims, "float3", H5T_NATIVE_FLOAT, f1_attr_fdata); + write_attr(f2_gid2, 1, attr_dims, "integer1", H5T_NATIVE_INT, f2_attr_idata); + write_attr(f2_gid2, 1, attr_dims, "float2", H5T_NATIVE_FLOAT, f2_attr_fdata); - /*---------------------------------- + /*---------------------------------- * CASE5 - Different attr number, all different attr name * add attr to g3 */ - write_attr(f1_gid3,1,attr_dims,"integer10",H5T_NATIVE_INT,f1_attr_idata); - write_attr(f1_gid3,1,attr_dims,"float11",H5T_NATIVE_FLOAT,f1_attr_fdata); - write_attr(f1_gid3,1,attr_dims,"float12",H5T_NATIVE_FLOAT,f1_attr_fdata); - - write_attr(f2_gid3,1,attr_dims,"integer3",H5T_NATIVE_INT,f2_attr_idata); - write_attr(f2_gid3,1,attr_dims,"float4",H5T_NATIVE_FLOAT,f2_attr_fdata); + write_attr(f1_gid3, 1, attr_dims, "integer10", H5T_NATIVE_INT, f1_attr_idata); + write_attr(f1_gid3, 1, attr_dims, "float11", H5T_NATIVE_FLOAT, f1_attr_fdata); + write_attr(f1_gid3, 1, attr_dims, "float12", H5T_NATIVE_FLOAT, f1_attr_fdata); + write_attr(f2_gid3, 1, attr_dims, "integer3", H5T_NATIVE_INT, f2_attr_idata); + write_attr(f2_gid3, 1, attr_dims, "float4", H5T_NATIVE_FLOAT, f2_attr_fdata); out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1 > 0) + if (fid1 > 0) H5Fclose(fid1); - if(fid2 > 0) + if (fid2 > 0) H5Fclose(fid2); - if(f1_gid > 0) + if (f1_gid > 0) H5Gclose(f1_gid); - if(f2_gid > 0) + if (f2_gid > 0) H5Gclose(f2_gid); - if(f1_gid2 > 0) + if (f1_gid2 > 0) H5Gclose(f1_gid2); - if(f2_gid2 > 0) + if (f2_gid2 > 0) H5Gclose(f2_gid2); - if(f1_gid3 > 0) + if (f1_gid3 > 0) H5Gclose(f1_gid3); - if(f2_gid3 > 0) + if (f2_gid3 > 0) H5Gclose(f2_gid3); - if(f1_gid4 > 0) + if (f1_gid4 > 0) H5Gclose(f1_gid4); - if(f2_gid4 > 0) + if (f2_gid4 > 0) H5Gclose(f2_gid4); - if(f1_did > 0) + if (f1_did > 0) H5Dclose(f1_did); - if(f2_did > 0) + if (f2_did > 0) H5Dclose(f2_did); - if(f1_sid > 0) + if (f1_sid > 0) H5Sclose(f1_sid); - if(f2_sid > 0) + if (f2_sid > 0) H5Sclose(f2_sid); - if(f1_tid > 0) + if (f1_tid > 0) H5Tclose(f1_tid); - if(f2_tid > 0) + if (f2_tid > 0) H5Tclose(f2_tid); return status; } - /*------------------------------------------------------------------------- -* Function: test_datasets -* -* Purpose: Check all HDF5 classes -* H5T_INTEGER, H5T_FLOAT -* H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE, -* H5T_ENUM, H5T_VLEN, H5T_ARRAY -* -*------------------------------------------------------------------------- -*/ + * Function: test_datasets + * + * Purpose: Check all HDF5 classes + * H5T_INTEGER, H5T_FLOAT + * H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE, + * H5T_ENUM, H5T_VLEN, H5T_ARRAY + * + *------------------------------------------------------------------------- + */ static -int test_datasets(const char *file, - int make_diffs /* flag to modify data buffers */) +int test_datasets(const char *file, int make_diffs /* flag to modify data buffers */) { - hid_t fid; - hid_t did; - hid_t gid; - hid_t sid; - hsize_t dims[1]={2}; - herr_t status; - int buf[2]={1,2}; - - if(make_diffs > 0) + hid_t fid = -1; + hid_t did = -1; + hid_t gid = -1; + hid_t sid = -1; + hsize_t dims[1] = { 2 }; + herr_t status; + int buf[2] = { 1, 2 }; + + if (make_diffs > 0) memset(buf, 0, sizeof buf); /* Create a file */ - if((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; /* Create a 1D dataset */ sid = H5Screate_simple(1, dims, NULL); - did = H5Dcreate2(fid, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + did = H5Dcreate2(fid, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); status = H5Sclose(sid); assert(status >= 0); /* Create a group */ - gid = H5Gcreate2(fid, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + gid = H5Gcreate2(fid, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /*------------------------------------------------------------------------- * write a series of datasets on the group *------------------------------------------------------------------------- */ - write_dset_in(gid,"/dset",fid,make_diffs); + write_dset_in(gid, "/dset", fid, make_diffs); /* close */ status = H5Dclose(did); @@ -1355,29 +1331,29 @@ int test_datasets(const char *file, } /*------------------------------------------------------------------------- -* Function: test_special_datasets -* -* Purpose: Check datasets with datasapce of zero dimension size. -*------------------------------------------------------------------------- -*/ + * Function: test_special_datasets + * + * Purpose: Check datasets with datasapce of zero dimension size. + *------------------------------------------------------------------------- + */ static -int test_special_datasets(const char *file, - int make_diffs /* flag to modify data buffers */) +int test_special_datasets(const char *file, int make_diffs /* flag to modify data buffers */) { - hid_t fid; - hid_t did; - hid_t sid0, sid; - hsize_t dims0[SPACE1_RANK]={SPACE1_DIM1, SPACE1_DIM2}; - hsize_t dims[SPACE1_RANK]={SPACE1_DIM1, SPACE1_DIM2}; - herr_t status; + hid_t fid = -1; + hid_t did = -1; + hid_t sid0 = -1; + hid_t sid = -1; + hsize_t dims0[SPACE1_RANK] = { SPACE1_DIM1, SPACE1_DIM2 }; + hsize_t dims[SPACE1_RANK] = { SPACE1_DIM1, SPACE1_DIM2 }; + herr_t status; /* Create a file */ - if((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; /* Create a dataset with zero dimension size */ sid0 = H5Screate_simple(SPACE1_RANK, dims0, NULL); - did = H5Dcreate2(fid, "dset1", H5T_NATIVE_INT, sid0, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + did = H5Dcreate2(fid, "dset1", H5T_NATIVE_INT, sid0, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* close dataset */ status = H5Dclose(did); @@ -1388,12 +1364,12 @@ int test_special_datasets(const char *file, assert(status >= 0); /* Create a dataset with zero dimension size in one file but the other one - * has a dataset with a non-zero dimension size */ - if(make_diffs) + * has a dataset with a non-zero dimension size */ + if (make_diffs) dims[1] = SPACE1_DIM2 + 4; sid = H5Screate_simple(SPACE1_RANK, dims, NULL); - did = H5Dcreate2(fid, "dset2", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + did = H5Dcreate2(fid, "dset2", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* close dataspace */ status = H5Sclose(sid); @@ -1410,26 +1386,25 @@ int test_special_datasets(const char *file, } /*------------------------------------------------------------------------- -* -* Purpose: Create test files to compare links, one has longer name than -* the other and short name is subset of long name. -* -* Programmer: Jonathan Kim (Feb 17, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: Create test files to compare links, one has longer name than + * the other and short name is subset of long name. + * + * Programmer: Jonathan Kim (Feb 17, 2010) + * + *-------------------------------------------------------------------------*/ static int test_link_name(const char *fname1) { - hid_t fid1=0; - hid_t gid1=0; - hid_t gid2=0; - herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t gid1 = -1; + hid_t gid2 = -1; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; @@ -1439,16 +1414,15 @@ static int test_link_name(const char *fname1) * Groups *------------------------------------------------------------------------*/ gid1 = H5Gcreate2(fid1, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1 < 0) - { + if (gid1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; } - gid2 = H5Gcreate2(fid1, "group_longname", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + gid2 = H5Gcreate2(fid1, "group_longname", H5P_DEFAULT, H5P_DEFAULT, + H5P_DEFAULT); - if (gid2 < 0) - { + if (gid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; @@ -1458,16 +1432,14 @@ static int test_link_name(const char *fname1) * Soft Links *------------------------------------------------------------------------*/ status = H5Lcreate_soft("group", fid1, "link_g1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("group_longname", fid1, "link_g2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; @@ -1477,38 +1449,37 @@ out: /*----------------------------------------------------------------------- * Close *------------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(gid1) + if (gid1) H5Gclose(gid1); - if(gid2) + if (gid2) H5Gclose(gid2); return status; } /*------------------------------------------------------------------------- -* -* Purpose: Create test files to compare soft links in various way -* -* Programmer: Jonathan Kim (Feb 17, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: Create test files to compare soft links in various way + * + * Programmer: Jonathan Kim (Feb 17, 2010) + * + *-------------------------------------------------------------------------*/ static int test_soft_links(const char *fname1) { - hid_t fid1=0; - hid_t gid1=0; - hsize_t dims2[2] = {2,4}; - int data1[4][2] = {{0,1},{2,3},{1,2},{3,4}}; - int data2[4][2] = {{0,0},{0,0},{0,0},{0,0}}; - herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t gid1 = -1; + hsize_t dims2[2] = { 2, 4 }; + int data1[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; + int data2[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; @@ -1518,8 +1489,7 @@ static int test_soft_links(const char *fname1) * Groups *------------------------------------------------------------------------*/ gid1 = H5Gcreate2(fid1, "target_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1 < 0) - { + if (gid1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; @@ -1529,25 +1499,22 @@ static int test_soft_links(const char *fname1) * Datasets *------------------------------------------------------------------------*/ /* file1 */ - status = write_dset(fid1,2,dims2,"target_dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "target_dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(fid1,2,dims2,"target_dset2",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "target_dset2", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid1,2,dims2,"dset",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid1, 2, dims2, "dset", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; @@ -1558,48 +1525,42 @@ static int test_soft_links(const char *fname1) *------------------------------------------------------------------------*/ /* file 1 */ status = H5Lcreate_soft("/target_dset1", fid1, "softlink_dset1_1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("/target_dset1", fid1, "softlink_dset1_2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("/target_dset2", fid1, "softlink_dset2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("/target_group", fid1, "softlink_group1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("/target_group", fid1, "softlink_group2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("/no_obj", fid1, "softlink_noexist", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; @@ -1609,38 +1570,37 @@ out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(gid1) + if (gid1) H5Gclose(gid1); return status; } /*------------------------------------------------------------------------- -* -* Purpose: Create test files to compare linked soft links in various way -* -* Programmer: Jonathan Kim (Feb 17, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: Create test files to compare linked soft links in various way + * + * Programmer: Jonathan Kim (Feb 17, 2010) + * + *-------------------------------------------------------------------------*/ static int test_linked_softlinks(const char *fname1) { - hid_t fid1=0; - hid_t gid1=0; - hid_t gid2=0; - hid_t gid3=0; - hsize_t dims2[2] = {2,4}; - int data1[4][2] = {{0,1},{2,3},{1,2},{3,4}}; - int data2[4][2] = {{0,0},{0,0},{0,0},{0,0}}; - herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t gid1 = -1; + hid_t gid2 = -1; + hid_t gid3 = -1; + hsize_t dims2[2] = { 2, 4 }; + int data1[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; + int data2[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; @@ -1650,24 +1610,21 @@ static int test_linked_softlinks(const char *fname1) * Groups *------------------------------------------------------------------------*/ gid1 = H5Gcreate2(fid1, "target_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1 < 0) - { + if (gid1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; } gid2 = H5Gcreate2(fid1, "target_group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid2 < 0) - { + if (gid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; } gid3 = H5Gcreate2(fid1, "target_group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid3 < 0) - { + if (gid3 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; @@ -1677,24 +1634,21 @@ static int test_linked_softlinks(const char *fname1) * Datasets *------------------------------------------------------------------------*/ /* file1 */ - status = write_dset(fid1,2,dims2,"target_dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "target_dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(fid1,2,dims2,"target_dset2",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "target_dset2", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid1,2,dims2,"dset",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid1, 2, dims2, "dset", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; @@ -1704,98 +1658,86 @@ static int test_linked_softlinks(const char *fname1) * Soft Links (Linked) *------------------------------------------------------------------------*/ /*--------- - * file 1 */ + * file 1 */ status = H5Lcreate_soft("/target_dset1", fid1, "softlink1_to_dset1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("softlink1_to_dset1", fid1, "softlink1_to_slink1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("softlink1_to_slink1", fid1, "softlink1_to_slink2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("/target_dset2", fid1, "softlink2_to_dset2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("softlink2_to_dset2", fid1, "softlink2_to_slink1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("softlink2_to_slink1", fid1, "softlink2_to_slink2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("target_group1", fid1, "softlink3_to_group1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("softlink3_to_group1", fid1, "softlink3_to_slink1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("softlink3_to_slink1", fid1, "softlink3_to_slink2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("target_group2", fid1, "softlink4_to_group2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("softlink4_to_group2", fid1, "softlink4_to_slink1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("softlink4_to_slink1", fid1, "softlink4_to_slink2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; @@ -1805,52 +1747,50 @@ out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(gid1) + if (gid1) H5Gclose(gid1); - if(gid2) + if (gid2) H5Gclose(gid2); - if(gid3) + if (gid3) H5Gclose(gid3); return status; } /*------------------------------------------------------------------------- -* -* Purpose: Create test files to compare external links in various way -* -* Programmer: Jonathan Kim (Feb 17, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: Create test files to compare external links in various way + * + * Programmer: Jonathan Kim (Feb 17, 2010) + * + *-------------------------------------------------------------------------*/ static int test_external_links(const char *fname1, const char *fname2) { - hid_t fid1=0; - hid_t fid2=0; - hid_t gid1=0; - hid_t gid2=0; - hsize_t dims2[2] = {2,4}; - int data1[4][2] = {{0,1},{2,3},{1,2},{3,4}}; - int data2[4][2] = {{0,0},{0,0},{0,0},{0,0}}; - herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t fid2 = -1; + hid_t gid1 = -1; + hid_t gid2 = -1; + hsize_t dims2[2] = { 2, 4 }; + int data1[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; + int data2[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ /* source file */ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; } /* target file */ - fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid2 < 0) - { + fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); status = FAIL; goto out; @@ -1860,18 +1800,16 @@ static int test_external_links(const char *fname1, const char *fname2) * Groups *------------------------------------------------------------------------*/ /*-------------- - * target file */ + * target file */ gid1 = H5Gcreate2(fid2, "target_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1 < 0) - { + if (gid1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } gid2 = H5Gcreate2(fid2, "target_group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid2 < 0) - { + if (gid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; @@ -1880,26 +1818,23 @@ static int test_external_links(const char *fname1, const char *fname2) * Datasets *------------------------------------------------------------------------*/ /*-------------- - * target file */ - status = write_dset(fid2,2,dims2,"target_dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + * target file */ + status = write_dset(fid2, 2, dims2, "target_dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid1,2,dims2,"x_dset",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid1, 2, dims2, "x_dset", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid2,2,dims2,"x_dset",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(gid2, 2, dims2, "x_dset", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; @@ -1911,48 +1846,42 @@ static int test_external_links(const char *fname1, const char *fname2) /*--------------*/ /* source file */ status = H5Lcreate_external(fname2, "/target_group/x_dset", fid1, "ext_link_dset1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external(fname2, "/target_group2/x_dset", fid1, "ext_link_dset2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external(fname2, "/target_group", fid1, "/ext_link_grp1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external(fname2, "/target_group2", fid1, "/ext_link_grp2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external(fname2, "no_obj", fid1, "ext_link_noexist1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external("no_file.h5", "no_obj", fid1, "ext_link_noexist2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; @@ -1962,52 +1891,50 @@ out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(fid2) + if (fid2) H5Fclose(fid2); - if(gid1) + if (gid1) H5Gclose(gid1); - if(gid2) + if (gid2) H5Gclose(gid2); return status; } /*------------------------------------------------------------------------- -* -* Purpose: Create test files to compare external links which point to -* soft link in various way -* -* Programmer: Jonathan Kim (Feb 17, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: Create test files to compare external links which point to + * soft link in various way + * + * Programmer: Jonathan Kim (Feb 17, 2010) + * + *-------------------------------------------------------------------------*/ static int test_ext2soft_links(const char *fname1, const char *fname2) { - hid_t fid1=0; - hid_t fid2=0; - hid_t gid2=0; - hsize_t dims2[2] = {2,4}; - int data1[4][2] = {{0,1},{2,3},{1,2},{3,4}}; - int data2[4][2] = {{0,0},{0,0},{0,0},{0,0}}; - herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t fid2 = -1; + hid_t gid2 = -1; + hsize_t dims2[2] = { 2, 4 }; + int data1[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; + int data2[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ /* source file */ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; } /* target file */ - fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid2 < 0) - { + fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); status = FAIL; goto out; @@ -2018,8 +1945,7 @@ static int test_ext2soft_links(const char *fname1, const char *fname2) *------------------------------------------------------------------------*/ /* target file */ gid2 = H5Gcreate2(fid2, "target_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid2 < 0) - { + if (gid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; @@ -2029,18 +1955,16 @@ static int test_ext2soft_links(const char *fname1, const char *fname2) * Datasets *------------------------------------------------------------------------*/ /*-------------- - * target file */ - status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + * target file */ + status = write_dset(fid2, 2, dims2, "dset1", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(fid2,2,dims2,"dset2",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid2, 2, dims2, "dset2", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; @@ -2050,18 +1974,16 @@ static int test_ext2soft_links(const char *fname1, const char *fname2) * Soft Links (Linked) *------------------------------------------------------------------------*/ /*--------------- - * target file */ + * target file */ status = H5Lcreate_soft("/dset1", fid2, "softlink_to_dset1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_soft("/dset2", fid2, "softlink_to_dset2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); status = FAIL; goto out; @@ -2071,26 +1993,23 @@ static int test_ext2soft_links(const char *fname1, const char *fname2) * External Links *------------------------------------------------------------------------*/ /*--------------- - * source file */ + * source file */ status = H5Lcreate_external(fname2, "/target_group", fid1, "ext_link", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external(fname2, "/softlink_to_dset1", fid1, "ext_link_to_slink1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external(fname2, "/softlink_to_dset2", fid1, "ext_link_to_slink2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; @@ -2100,46 +2019,44 @@ out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(fid2) + if (fid2) H5Fclose(fid2); - if(gid2) + if (gid2) H5Gclose(gid2); return status; } /*------------------------------------------------------------------------- -* -* Purpose: Create test files to compare dangling links in various way -* -* Programmer: Jonathan Kim (Feb 17, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: Create test files to compare dangling links in various way + * + * Programmer: Jonathan Kim (Feb 17, 2010) + * + *-------------------------------------------------------------------------*/ static int test_dangle_links(const char *fname1, const char *fname2) { - hid_t fid1=0; - hid_t fid2=0; - hsize_t dims2[2] = {2,4}; - int data1[4][2] = {{0,1},{2,3},{1,2},{3,4}}; - int data2[4][2] = {{0,0},{0,0},{0,0},{0,0}}; - herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t fid2 = -1; + hsize_t dims2[2] = { 2, 4 }; + int data1[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; + int data2[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; } - fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid2 < 0) - { + fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); status = FAIL; goto out; @@ -2149,34 +2066,30 @@ static int test_dangle_links(const char *fname1, const char *fname2) * Datasets *------------------------------------------------------------------------*/ /* file1 */ - status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(fid1,2,dims2,"dset2",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "dset2", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } /* file2 */ - status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid2, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(fid2,2,dims2,"dset2",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(fid2, 2, dims2, "dset2", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; @@ -2187,32 +2100,28 @@ static int test_dangle_links(const char *fname1, const char *fname2) *------------------------------------------------------------------------*/ /* file 1 */ status = H5Lcreate_soft("no_obj", fid1, "soft_link1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("/dset1", fid1, "soft_link2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("no_obj", fid1, "soft_link3", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("no_obj1", fid1, "soft_link4", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; @@ -2220,32 +2129,28 @@ static int test_dangle_links(const char *fname1, const char *fname2) /* file 2 */ status = H5Lcreate_soft("no_obj", fid2, "soft_link1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_soft("no_obj", fid2, "soft_link2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_soft("/dset2", fid2, "soft_link3", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_soft("no_obj2", fid2, "soft_link4", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); status = FAIL; goto out; @@ -2256,32 +2161,28 @@ static int test_dangle_links(const char *fname1, const char *fname2) *------------------------------------------------------------------------*/ /* file1 */ status = H5Lcreate_external(fname2, "no_obj", fid1, "ext_link1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external(fname2, "/dset1", fid1, "ext_link2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external(fname2, "no_obj", fid1, "ext_link3", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external("no_file.h5", "no_obj", fid1, "ext_link4", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; @@ -2289,32 +2190,28 @@ static int test_dangle_links(const char *fname1, const char *fname2) /* file2 */ status = H5Lcreate_external(fname1, "no_obj", fid2, "ext_link1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_external(fname1, "no_obj", fid2, "ext_link2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_external(fname1, "/dset2", fid2, "ext_link3", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_external("no_file.h5", "no_obj", fid2, "ext_link4", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); status = FAIL; goto out; @@ -2324,47 +2221,45 @@ out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(fid2) + if (fid2) H5Fclose(fid2); return status; } /*------------------------------------------------------------------------- -* -* Purpose: For testing comparing group member objects recursively -* -* Programmer: Jonathan Kim (Aug 19, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: For testing comparing group member objects recursively + * + * Programmer: Jonathan Kim (Aug 19, 2010) + * + *-------------------------------------------------------------------------*/ static int test_group_recurse(const char *fname1, const char *fname2) { - hid_t fid1=0; - hid_t fid2=0; - hid_t gid1_f1=0, gid2_f1=0, gid3_f1=0, gid10_f1=0; - hid_t gid1_f2=0, gid2_f2=0, gid3_f2=0, gid11_f2=0; - hsize_t dims2[2] = {2,4}; - int data1[4][2] = {{0,1},{0,1},{1,0},{1,0}}; - int data2[4][2] = {{0,2},{0,2},{2,0},{2,0}}; - int data3[4][2] = {{0,3},{0,3},{3,0},{3,0}}; - herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t fid2 = -1; + hid_t gid1_f1 = -1, gid2_f1 = -1, gid3_f1 = -1, gid10_f1 = -1; + hid_t gid1_f2 = -1, gid2_f2 = -1, gid3_f2 = -1, gid11_f2 = -1; + hsize_t dims2[2] = { 2, 4 }; + int data1[4][2] = { { 0, 1 }, { 0, 1 }, { 1, 0 }, { 1, 0 } }; + int data2[4][2] = { { 0, 2 }, { 0, 2 }, { 2, 0 }, { 2, 0 } }; + int data3[4][2] = { { 0, 3 }, { 0, 3 }, { 3, 0 }, { 3, 0 } }; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; } - fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid2 < 0) - { + fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); status = FAIL; goto out; @@ -2375,32 +2270,28 @@ static int test_group_recurse(const char *fname1, const char *fname2) *------------------------------------------------------------------------*/ /* file1 */ gid1_f1 = H5Gcreate2(fid1, "/grp1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1_f1 < 0) - { + if (gid1_f1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; } gid2_f1 = H5Gcreate2(fid1, "/grp1/grp2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid2_f1 < 0) - { + if (gid2_f1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; } gid3_f1 = H5Gcreate2(fid1, "/grp1/grp2/grp3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid3_f1 < 0) - { + if (gid3_f1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; } gid10_f1 = H5Gcreate2(fid1, "/grp10", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid10_f1 < 0) - { + if (gid10_f1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; @@ -2408,32 +2299,28 @@ static int test_group_recurse(const char *fname1, const char *fname2) /* file2 */ gid1_f2 = H5Gcreate2(fid2, "/grp1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1_f2 < 0) - { + if (gid1_f2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } gid2_f2 = H5Gcreate2(fid2, "/grp1/grp2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid2_f2 < 0) - { + if (gid2_f2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } gid3_f2 = H5Gcreate2(fid2, "/grp1/grp2/grp3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid3_f2 < 0) - { + if (gid3_f2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } gid11_f2 = H5Gcreate2(fid2, "/grp11", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid11_f2 < 0) - { + if (gid11_f2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; @@ -2443,50 +2330,44 @@ static int test_group_recurse(const char *fname1, const char *fname2) * Datasets under root *------------------------------------------------------------------------*/ /* file1 */ - status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(fid1,2,dims2,"dset2",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "dset2", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(fid1,2,dims2,"dset3",H5T_NATIVE_INT,data3); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "dset3", H5T_NATIVE_INT, data3); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } /* file2 */ - status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid2, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(fid2,2,dims2,"dset2",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(fid2, 2, dims2, "dset2", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(fid2,2,dims2,"dset3",H5T_NATIVE_INT,data3); - if (status == FAIL) - { + status = write_dset(fid2, 2, dims2, "dset3", H5T_NATIVE_INT, data3); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; @@ -2496,163 +2377,142 @@ static int test_group_recurse(const char *fname1, const char *fname2) * Datasets under group *------------------------------------------------------------------------*/ /* file1 */ - status = write_dset(gid1_f1,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid1_f1, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid2_f1,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid2_f1, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid2_f1,2,dims2,"dset2",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(gid2_f1, 2, dims2, "dset2", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid3_f1,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid3_f1, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid3_f1,2,dims2,"dset2",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(gid3_f1, 2, dims2, "dset2", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid3_f1,2,dims2,"dset3",H5T_NATIVE_INT,data3); - if (status == FAIL) - { + status = write_dset(gid3_f1, 2, dims2, "dset3", H5T_NATIVE_INT, data3); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid10_f1,2,dims2,"dset4",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid10_f1, 2, dims2, "dset4", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid10_f1,2,dims2,"dset5",H5T_NATIVE_INT,data3); - if (status == FAIL) - { + status = write_dset(gid10_f1, 2, dims2, "dset5", H5T_NATIVE_INT, data3); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } /* file2 */ - status = write_dset(gid1_f2,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid1_f2, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid2_f2,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid2_f2, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid2_f2,2,dims2,"dset2",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(gid2_f2, 2, dims2, "dset2", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid3_f2,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid3_f2, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid3_f2,2,dims2,"dset2",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(gid3_f2, 2, dims2, "dset2", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid3_f2,2,dims2,"dset3",H5T_NATIVE_INT,data3); - if (status == FAIL) - { + status = write_dset(gid3_f2, 2, dims2, "dset3", H5T_NATIVE_INT, data3); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid11_f2,2,dims2,"dset4",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid11_f2, 2, dims2, "dset4", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid11_f2,2,dims2,"dset5",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(gid11_f2, 2, dims2, "dset5", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - /*----------------------------------------------------------------------- * Soft Links *------------------------------------------------------------------------*/ /* file 1 */ status = H5Lcreate_soft("/grp1", fid1, "slink_grp1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("/grp1/grp2", fid1, "slink_grp2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("/grp1/grp2/grp3", fid1, "slink_grp3", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_soft("/grp10", fid1, "slink_grp10", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); status = FAIL; goto out; @@ -2660,32 +2520,28 @@ static int test_group_recurse(const char *fname1, const char *fname2) /* file 2 */ status = H5Lcreate_soft("/grp1", fid2, "slink_grp1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_soft("/grp1/grp2", fid2, "slink_grp2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_soft("/grp1/grp2/grp3", fid2, "slink_grp3", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_soft("/grp11", fid2, "slink_grp11", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); status = FAIL; goto out; @@ -2696,24 +2552,21 @@ static int test_group_recurse(const char *fname1, const char *fname2) *------------------------------------------------------------------------*/ /* file1 */ status = H5Lcreate_external(fname2, "/grp1", fid1, "elink_grp1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external(fname2, "/grp1/grp2", fid1, "elink_grp2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } status = H5Lcreate_external(fname2, "/grp1/grp2/grp3", fid1, "elink_grp3", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; @@ -2721,225 +2574,210 @@ static int test_group_recurse(const char *fname1, const char *fname2) /* file2 */ status = H5Lcreate_external(fname1, "/grp1", fid2, "elink_grp1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_external(fname1, "/grp1/grp2", fid2, "elink_grp2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); status = FAIL; goto out; } status = H5Lcreate_external(fname1, "/grp1/grp2/grp3", fid2, "elink_grp3", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); status = FAIL; goto out; } /*------------------------------ - * external circle route test - * file1/grp11 <-> file2/grp10 via elink_grp_circle link - */ + * external circle route test + * file1/grp11 <-> file2/grp10 via elink_grp_circle link + */ /* file1 */ status = H5Lcreate_external(fname2, "/grp11", gid10_f1, "elink_grp_circle", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); status = FAIL; goto out; } /* file2 */ status = H5Lcreate_external(fname1, "/grp10", gid11_f2, "elink_grp_circle", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); status = FAIL; goto out; } - out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(fid2) + if (fid2) H5Fclose(fid2); - if(gid1_f1) + if (gid1_f1) H5Gclose(gid1_f1); - if(gid2_f1) + if (gid2_f1) H5Gclose(gid2_f1); - if(gid3_f1) + if (gid3_f1) H5Gclose(gid3_f1); - if(gid1_f2) + if (gid1_f2) H5Gclose(gid1_f2); - if(gid2_f2) + if (gid2_f2) H5Gclose(gid2_f2); - if(gid3_f2) + if (gid3_f2) H5Gclose(gid3_f2); return status; } /*------------------------------------------------------------------------- -* -* Purpose: -* For testing comparing group member objects recursively via multiple -* linked external links -* -* Programmer: Jonathan Kim (Sep 16, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: + * For testing comparing group member objects recursively via multiple + * linked external links + * + * Programmer: Jonathan Kim (Sep 16, 2010) + * + *-------------------------------------------------------------------------*/ #define GRP_R_DSETNAME1 "dset1" #define GRP_R_DSETNAME2 "dset2" static int test_group_recurse2(void) { - hid_t fileid1 = -1; - hid_t grp1 = -1; - hid_t grp2 = -1; - hid_t grp3 = -1; - hid_t grp4 = -1; - hid_t dset1 = -1; - hid_t dset2 = -1; - hid_t datatype = -1; - hid_t dataspace = -1; - hid_t fileid2 = -1; - hid_t fileid3 = -1; - hid_t fileid4 = -1; - hsize_t dimsf[2]; /* dataset dimensions */ - herr_t status=0; - int data1[4][2] = {{0,0},{1,1},{2,2},{3,3}}; - int data2[4][2] = {{0,0},{0,1},{0,2},{3,3}}; - - /*----------------------------------------------------------------------- + hid_t fileid1 = -1; + hid_t grp1 = -1; + hid_t grp2 = -1; + hid_t grp3 = -1; + hid_t grp4 = -1; + hid_t dset1 = -1; + hid_t dset2 = -1; + hid_t datatype = -1; + hid_t dataspace = -1; + hid_t fileid2 = -1; + hid_t fileid3 = -1; + hid_t fileid4 = -1; + hsize_t dimsf[2]; /* dataset dimensions */ + herr_t status = 0; + int data1[4][2] = { { 0, 0 }, { 1, 1 }, { 2, 2 }, { 3, 3 } }; + int data2[4][2] = { { 0, 0 }, { 0, 1 }, { 0, 2 }, { 3, 3 } }; + + /*----------------------------------------------------------------------- * FILE 1 *------------------------------------------------------------------------*/ /* - * Create a new file using H5F_ACC_TRUNC access, - * default file creation properties, and default file - * access properties. - */ + * Create a new file using H5F_ACC_TRUNC access, + * default file creation properties, and default file + * access properties. + */ fileid1 = H5Fcreate(GRP_RECURSE1_EXT, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * Groups *------------------------------------------------------------------------*/ grp1 = H5Gcreate2(fileid1, "/g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (grp1 < 0) - { + if (grp1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT); status = FAIL; goto out; } grp2 = H5Gcreate2(grp1, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (grp2 < 0) - { + if (grp2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT); status = FAIL; goto out; } grp3 = H5Gcreate2(grp2, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (grp3 < 0) - { + if (grp3 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT); status = FAIL; goto out; } grp4 = H5Gcreate2(grp3, "g4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (grp4 < 0) - { + if (grp4 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT); status = FAIL; goto out; } - - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * Datasets *------------------------------------------------------------------------*/ /* - * Describe the size of the array and create the data space for fixed - * size dataset. - */ + * Describe the size of the array and create the data space for fixed + * size dataset. + */ dimsf[0] = 4; dimsf[1] = 2; dataspace = H5Screate_simple(2, dimsf, NULL); /* - * Define datatype for the data in the file. - * We will store little endian INT numbers. - */ + * Define datatype for the data in the file. + * We will store little endian INT numbers. + */ datatype = H5Tcopy(H5T_NATIVE_INT); status = H5Tset_order(datatype, H5T_ORDER_LE); /*--------------- - * dset1 - */ + * dset1 + */ /* - * Create a new dataset within the file using defined dataspace and - * datatype and default dataset creation properties. - */ - dset1 = H5Dcreate2(fileid1, GRP_R_DSETNAME1, datatype, dataspace, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + * Create a new dataset within the file using defined dataspace and + * datatype and default dataset creation properties. + */ + dset1 = H5Dcreate2(fileid1, GRP_R_DSETNAME1, datatype, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* - * Write the data to the dataset using default transfer properties. - */ + * Write the data to the dataset using default transfer properties. + */ status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1); H5Dclose(dset1); /*--------------- - * dset1 - */ + * dset1 + */ /* - * Create a new dataset within the file using defined dataspace and - * datatype and default dataset creation properties. - */ - dset1 = H5Dcreate2(grp3, GRP_R_DSETNAME1, datatype, dataspace, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + * Create a new dataset within the file using defined dataspace and + * datatype and default dataset creation properties. + */ + dset1 = H5Dcreate2(grp3, GRP_R_DSETNAME1, datatype, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* - * Write the data to the dataset using default transfer properties. - */ + * Write the data to the dataset using default transfer properties. + */ status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1); /*--------------- - * dset2 - */ + * dset2 + */ /* - * Create a new dataset within the fileid1 using defined dataspace and - * datatype and default dataset creation properties. - */ - dset2 = H5Dcreate2(grp4, GRP_R_DSETNAME2, datatype, dataspace, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + * Create a new dataset within the fileid1 using defined dataspace and + * datatype and default dataset creation properties. + */ + dset2 = H5Dcreate2(grp4, GRP_R_DSETNAME2, datatype, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* - * Write the data to the dataset using default transfer properties. - */ + * Write the data to the dataset using default transfer properties. + */ status = H5Dwrite(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2); - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * Soft links *------------------------------------------------------------------------*/ /* - * under '/' root - */ + * under '/' root + */ /* link to dset1 */ status = H5Lcreate_soft(GRP_R_DSETNAME1, fileid1, "soft_dset1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", GRP_RECURSE1_EXT); status = FAIL; goto out; @@ -2952,90 +2790,83 @@ static int test_group_recurse2(void) H5Gclose(grp3); H5Gclose(grp4); - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * FILE 2-3 *------------------------------------------------------------------------*/ /* crate target file */ fileid4 = H5Fcreate(GRP_RECURSE2_EXT3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - /*----------------------------------------------- + /*----------------------------------------------- * Groups */ grp4 = H5Gcreate2(fileid4, "/g4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (grp4 < 0) - { + if (grp4 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE2_EXT3); status = FAIL; goto out; } /*--------------- - * dset2 - */ + * dset2 + */ /* - * Create a new dataset within the fileid1 using defined dataspace and - * datatype and default dataset creation properties. - */ - dset2 = H5Dcreate2(grp4, GRP_R_DSETNAME2, datatype, dataspace, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + * Create a new dataset within the fileid1 using defined dataspace and + * datatype and default dataset creation properties. + */ + dset2 = H5Dcreate2(grp4, GRP_R_DSETNAME2, datatype, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* - * Write the data to the dataset using default transfer properties. - */ + * Write the data to the dataset using default transfer properties. + */ status = H5Dwrite(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2); H5Gclose(grp4); H5Dclose(dset2); - - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * FILE 2-2 *------------------------------------------------------------------------*/ /* crate target file */ fileid3 = H5Fcreate(GRP_RECURSE2_EXT2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - /*----------------------------------------------- + /*----------------------------------------------- * Groups */ grp2 = H5Gcreate2(fileid3, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (grp2 < 0) - { + if (grp2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE2_EXT2); status = FAIL; goto out; } grp3 = H5Gcreate2(grp2, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (grp3 < 0) - { + if (grp3 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE2_EXT2); status = FAIL; goto out; } /*--------------- - * dset1 - */ + * dset1 + */ /* - * Create a new dataset within the fileid1 using defined dataspace and - * datatype and default dataset creation properties. - */ - dset1 = H5Dcreate2(grp3, GRP_R_DSETNAME1, datatype, dataspace, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + * Create a new dataset within the fileid1 using defined dataspace and + * datatype and default dataset creation properties. + */ + dset1 = H5Dcreate2(grp3, GRP_R_DSETNAME1, datatype, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* - * Write the data to the dataset using default transfer properties. - */ + * Write the data to the dataset using default transfer properties. + */ status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1); - /*----------------------------------------------- + /*----------------------------------------------- * extlink to $GRP_RECURSE2_EXT3/g4 */ status = H5Lcreate_external(GRP_RECURSE2_EXT3, "/g4", fileid3, "/g2/g3/g4", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", GRP_RECURSE2_EXT2); status = FAIL; goto out; @@ -3045,56 +2876,52 @@ static int test_group_recurse2(void) H5Gclose(grp2); H5Gclose(grp3); - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * FILE 2-1 *------------------------------------------------------------------------*/ /* crate target file */ fileid2 = H5Fcreate(GRP_RECURSE2_EXT1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - /*----------------------------------------------- + /*----------------------------------------------- * Groups */ grp1 = H5Gcreate2(fileid2, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (grp1 < 0) - { + if (grp1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT); status = FAIL; goto out; } /*--------------- - * dset1 - */ - dset1 = H5Dcreate2(fileid2, GRP_R_DSETNAME1, datatype, dataspace, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + * dset1 + */ + dset1 = H5Dcreate2(fileid2, GRP_R_DSETNAME1, datatype, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* - * Write the data to the dataset using default transfer properties. - */ + * Write the data to the dataset using default transfer properties. + */ status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1); - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * Soft links *------------------------------------------------------------------------*/ /* - * under '/' root - */ + * under '/' root + */ /* link to dset1 */ status = H5Lcreate_soft(GRP_R_DSETNAME1, fileid2, "soft_dset1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", GRP_RECURSE2_EXT1); status = FAIL; goto out; } - /*----------------------------------------------- + /*----------------------------------------------- * extlink to $GRP_RECURSE2_EXT2/g2 */ status = H5Lcreate_external(GRP_RECURSE2_EXT2, "/g2", fileid2, "/g1/g2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", GRP_RECURSE2_EXT1); status = FAIL; goto out; @@ -3105,72 +2932,67 @@ static int test_group_recurse2(void) out: /* - * Close/release resources. - */ - if(dataspace > 0) + * Close/release resources. + */ + if (dataspace > 0) H5Sclose(dataspace); - if(datatype > 0) + if (datatype > 0) H5Tclose(datatype); - if(fileid1 > 0) + if (fileid1 > 0) H5Fclose(fileid1); - if(fileid2 > 0) + if (fileid2 > 0) H5Fclose(fileid2); - if(fileid3 > 0) + if (fileid3 > 0) H5Fclose(fileid3); - if(fileid4 > 0) + if (fileid4 > 0) H5Fclose(fileid4); return status; } - /*------------------------------------------------------------------------- -* -* Purpose: Create test files for excluding obj. -* Same structure, same obj names -* Test : exclude obj with different value to verify the rest are same -* -* Programmer: Jonathan Kim (July, 21, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: Create test files for excluding obj. + * Same structure, same obj names + * Test : exclude obj with different value to verify the rest are same + * + * Programmer: Jonathan Kim (July, 21, 2010) + * + *-------------------------------------------------------------------------*/ static int test_exclude_obj1(const char *fname1, const char *fname2) { - hid_t fid1=0; - hid_t fid2=0; - hid_t gid1=0; - hid_t gid2=0; - hsize_t dims2[2] = {2,4}; - int data1[4][2] = {{0,0},{0,0},{0,0},{0,0}}; - int data2[4][2] = {{0,1},{2,3},{1,2},{3,4}}; - herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t fid2 = -1; + hid_t gid1 = -1; + hid_t gid2 = -1; + hsize_t dims2[2] = { 2, 4 }; + int data1[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; + int data2[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; } - fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid2 < 0) - { + fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); status = FAIL; goto out; } - - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * Group *------------------------------------------------------------------------*/ /* file1 */ gid1 = H5Gcreate2(fid1, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1 < 0) - { + if (gid1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; @@ -3179,133 +3001,119 @@ static int test_exclude_obj1(const char *fname1, const char *fname2) /* file2 */ gid2 = H5Gcreate2(fid2, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid2 < 0) - { + if (gid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } - /*----------------------------------------------------------------------- * Datasets *------------------------------------------------------------------------*/ /* file1 */ - status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid1,2,dims2,"dset2",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid1, 2, dims2, "dset2", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid1,2,dims2,"dset3",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid1, 2, dims2, "dset3", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - /* file2 */ - status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid2, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid2,2,dims2,"dset2",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid2, 2, dims2, "dset2", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid2,2,dims2,"dset3",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(gid2, 2, dims2, "dset3", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(fid2) + if (fid2) H5Fclose(fid2); - if(gid1) + if (gid1) H5Gclose(gid1); - if(gid2) + if (gid2) H5Gclose(gid2); return status; } /*------------------------------------------------------------------------- -* -* Purpose: Create test files for excluding obj. -* different structure and name -* Test : exclude different objs to verify the rest are same -* -* Programmer: Jonathan Kim (July, 21, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: Create test files for excluding obj. + * different structure and name + * Test : exclude different objs to verify the rest are same + * + * Programmer: Jonathan Kim (July, 21, 2010) + * + *-------------------------------------------------------------------------*/ static int test_exclude_obj2(const char *fname1, const char *fname2) { - hid_t fid1=0; - hid_t fid2=0; - hid_t gid1=0; - hid_t gid2=0; - hid_t gid3=0; - hsize_t dims2[2] = {2,4}; - int data1[4][2] = {{0,0},{0,0},{0,0},{0,0}}; - int data2[4][2] = {{0,1},{2,3},{1,2},{3,4}}; - herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t fid2 = -1; + hid_t gid1 = -1; + hid_t gid2 = -1; + hid_t gid3 = -1; + hsize_t dims2[2] = { 2, 4 }; + int data1[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; + int data2[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; } - fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid2 < 0) - { + fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); status = FAIL; goto out; } - - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * Group *------------------------------------------------------------------------*/ /* file1 */ gid1 = H5Gcreate2(fid1, "group10", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1 < 0) - { + if (gid1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; @@ -3313,9 +3121,7 @@ static int test_exclude_obj2(const char *fname1, const char *fname2) /* file2 */ gid2 = H5Gcreate2(fid2, "group10", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - if (gid2 < 0) - { + if (gid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; @@ -3324,133 +3130,118 @@ static int test_exclude_obj2(const char *fname1, const char *fname2) /* subset name from group10 */ gid3 = H5Gcreate2(fid2, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid3 < 0) - { + if (gid3 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; } - /*----------------------------------------------------------------------- * Datasets *------------------------------------------------------------------------*/ /* file1 */ - status = write_dset(fid1,2,dims2,"dset10",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "dset10", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid1,2,dims2,"dset2",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid1, 2, dims2, "dset2", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - /* file2 */ - status = write_dset(fid2,2,dims2,"dset10",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid2, 2, dims2, "dset10", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid2,2,dims2,"dset2",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid2, 2, dims2, "dset2", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - status = write_dset(gid3,2,dims2,"dset3",H5T_NATIVE_INT,data2); - if (status == FAIL) - { + status = write_dset(gid3, 2, dims2, "dset3", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; } - out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(fid2) + if (fid2) H5Fclose(fid2); - if(gid1) + if (gid1) H5Gclose(gid1); - if(gid2) + if (gid2) H5Gclose(gid2); - if(gid3) + if (gid3) H5Gclose(gid3); return status; } /*------------------------------------------------------------------------- -* -* Purpose: Create test files for excluding obj. -* Only one file contains unique objs. Common objs are same. -* Test : exclude unique objs to verify the rest are same -* - HDFFV-7837 -* -* Programmer: Jonathan Kim (Mar, 19, 2012) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: Create test files for excluding obj. + * Only one file contains unique objs. Common objs are same. + * Test : exclude unique objs to verify the rest are same - HDFFV-7837 + * + * Programmer: Jonathan Kim (Mar, 19, 2012) + * + *-------------------------------------------------------------------------*/ static int test_exclude_obj3(const char *fname1, const char *fname2) { - hid_t fid1=0; - hid_t fid2=0; - hid_t gid1=0; - hsize_t dims2[2] = {2,4}; - int data1[4][2] = {{0,0},{0,0},{0,0},{0,0}}; - herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t fid2 = -1; + hid_t gid1 = -1; + hsize_t dims2[2] = { 2, 4 }; + int data1[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; } - fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid2 < 0) - { + fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); status = FAIL; goto out; } - - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * Group *------------------------------------------------------------------------*/ /* file1 */ gid1 = H5Gcreate2(fid1, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1 < 0) - { + if (gid1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; @@ -3460,26 +3251,23 @@ static int test_exclude_obj3(const char *fname1, const char *fname2) * Datasets *------------------------------------------------------------------------*/ /* file1 */ - status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid1, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } - status = write_dset(gid1,2,dims2,"dset",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(gid1, 2, dims2, "dset", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); status = FAIL; goto out; } /* file2 */ - status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data1); - if (status == FAIL) - { + status = write_dset(fid2, 2, dims2, "dset1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); status = FAIL; goto out; @@ -3489,25 +3277,25 @@ out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(fid2) + if (fid2) H5Fclose(fid2); - if(gid1) + if (gid1) H5Gclose(gid1); return status; } /*------------------------------------------------------------------------- -* -* Purpose: Create test files for multiple variable length string/string array -* along with fixed length string/string array types in -* a compound type dataset. -* -* Programmer: Jonathan Kim (Oct, 26, 2010) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: Create test files for multiple variable length string/string array + * along with fixed length string/string array types in + * a compound type dataset. + * + * Programmer: Jonathan Kim (Oct, 26, 2010) + * + *-------------------------------------------------------------------------*/ #define STR_RANK 1 #define VLEN_STR_DIM 1 #define FIXLEN_STR_SIZE 21 @@ -3520,187 +3308,170 @@ out: static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int is_file_new) { int i; - - hid_t fid1 = -1; /* file id */ - hid_t gid = -1; + hid_t fid1 = -1; /* file id */ + hid_t gid = -1; /* compound1 datatype */ - typedef struct comp1_t - { - char *str_vlen; /* vlen string */ - char *str_vlen_repeat; /* vlen string */ - char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ - char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ - char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + typedef struct comp1_t { + char *str_vlen; /* vlen string */ + char *str_vlen_repeat; /* vlen string */ + char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ + char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ + const char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ + const char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ } comp1_t; /* compound2 datatype */ - typedef struct comp2_t - { - char *str_vlen; /* vlen string */ - char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ - char *str_vlen_repeat; /* vlen string */ - char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ - char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + typedef struct comp2_t { + char *str_vlen; /* vlen string */ + char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ + char *str_vlen_repeat; /* vlen string */ + char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ + const char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + const char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ } comp2_t; /* compound3 datatype */ - typedef struct comp3_t - { - char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ - char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ - char *str_vlen; /* vlen string */ - char *str_vlen_repeat; /* vlen string */ - char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ + typedef struct comp3_t { + char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ + char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ + char *str_vlen; /* vlen string */ + char *str_vlen_repeat; /* vlen string */ + char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + const char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ + const char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ } comp3_t; /* compound4 datatype */ - typedef struct comp4_t - { - char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ - char *str_vlen; /* vlen string */ - char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ - char *str_vlen_repeat; /* vlen string */ - char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ + typedef struct comp4_t { + char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ + char *str_vlen; /* vlen string */ + char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ + char *str_vlen_repeat; /* vlen string */ + char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + const char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + const char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ } comp4_t; /* compound5 datatype */ - typedef struct comp5_t - { - char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_vlen; /* vlen string */ - char *str_vlen_repeat; /* vlen string */ - char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ - char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ + typedef struct comp5_t { + const char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ + const char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + char *str_vlen; /* vlen string */ + char *str_vlen_repeat; /* vlen string */ + char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ + char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ } comp5_t; /* compound6 datatype */ - typedef struct comp6_t - { - char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_vlen; /* vlen string */ - char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ - char *str_vlen_repeat; /* vlen string */ - char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ + typedef struct comp6_t { + const char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + const char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + char *str_vlen; /* vlen string */ + char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ + char *str_vlen_repeat; /* vlen string */ + char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ } comp6_t; /* compound7 datatype */ - typedef struct comp7_t - { - char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ - char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ - char *str_vlen; /* vlen string */ - char *str_vlen_repeat; /* vlen string */ + typedef struct comp7_t { + char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + const char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ + const char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ + char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ + char *str_vlen; /* vlen string */ + char *str_vlen_repeat; /* vlen string */ } comp7_t; /* compound8 datatype */ - typedef struct comp8_t - { - char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ - char *str_vlen; /* vlen string */ - char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ - char *str_vlen_repeat; /* vlen string */ + typedef struct comp8_t { + char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + const char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + const char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ + char *str_vlen; /* vlen string */ + char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ + char *str_vlen_repeat; /* vlen string */ } comp8_t; /* compound9 datatype */ - typedef struct comp9_t - { - char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ - char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ - char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ - int int_data1; - hobj_ref_t objref1; /* reference */ - char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ - hobj_ref_t objref2; /* reference */ - char *str_vlen; /* vlen string */ - int int_data2; - char *str_vlen_repeat; /* vlen string */ - hobj_ref_t objref3; /* reference */ - int int_data3; + typedef struct comp9_t { + char str_array_fixlen[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + char str_fixlen_array_again[FIXLEN_STR_ARRY_DIM][FIXLEN_STR_ARRY_SIZE]; /* fixed len string array */ + const char *str_array_vlen[VLEN_STR_ARRY_DIM]; /* vlen string array */ + const char *str_vlen_array_again[VLEN_STR_ARRY_DIM]; /* vlen string array */ + char str_fixlen[FIXLEN_STR_SIZE]; /* fixed len string */ + int int_data1; + hobj_ref_t objref1; /* reference */ + char str_fixlen_repeat[FIXLEN_STR_SIZE]; /* fixed len string */ + hobj_ref_t objref2; /* reference */ + char *str_vlen; /* vlen string */ + int int_data2; + char *str_vlen_repeat; /* vlen string */ + hobj_ref_t objref3; /* reference */ + int int_data3; } comp9_t; /* vlen string */ - hid_t sid_vlen_str=0; /* dataspace ID */ - hid_t tid_vlen_str=0; /* datatype ID */ - char vlen_str_buf[]= { - "Variable length string" - }; - hsize_t dims_vlen_str[] = {VLEN_STR_DIM}; + hid_t sid_vlen_str = -1; /* dataspace ID */ + hid_t tid_vlen_str = -1; /* datatype ID */ + char vlen_str_buf[] = { "Variable length string" }; + hsize_t dims_vlen_str[] = { VLEN_STR_DIM }; /* fixlen string */ - hid_t sid_fixlen_str=0; /* dataspace ID */ - hid_t tid_fixlen_str=0; /* datatype ID */ - const char fixlen_str_buf[FIXLEN_STR_SIZE]= { - "Fixed length string" - }; - hsize_t dims_fixlen_str[] = {FIXLEN_STR_DIM}; + hid_t sid_fixlen_str = -1; /* dataspace ID */ + hid_t tid_fixlen_str = -1; /* datatype ID */ + const char fixlen_str_buf[FIXLEN_STR_SIZE] = { "Fixed length string" }; + hsize_t dims_fixlen_str[] = { FIXLEN_STR_DIM }; /* vlen string array */ - hid_t sid_vlen_str_array=0; /* dataspace ID */ - hid_t tid_vlen_str_array_pre=0; /* datatype ID */ - hid_t tid_vlen_str_array=0; /* datatype ID */ - char *vlen_str_array_buf[VLEN_STR_ARRY_DIM]= { - "1 - Variable length string Array", - "2 - Testing variable length string array in compound type", - "3 - Four score and seven\n years ago our forefathers brought forth on this continent a new nation," - }; - hsize_t dims_vlen_str_array[] = {VLEN_STR_ARRY_DIM}; + hid_t sid_vlen_str_array = -1; /* dataspace ID */ + hid_t tid_vlen_str_array_pre = -1; /* datatype ID */ + hid_t tid_vlen_str_array = -1; /* datatype ID */ + const char *vlen_str_array_buf[VLEN_STR_ARRY_DIM] = + { "1 - Variable length string Array", + "2 - Testing variable length string array in compound type", + "3 - Four score and seven\n years ago our forefathers brought forth on this continent a new nation," }; + hsize_t dims_vlen_str_array[] = { VLEN_STR_ARRY_DIM }; /* fixlen string array */ - hid_t sid_fixlen_str_array=0; /* dataspace ID */ - hid_t tid_fixlen_str_array_pre=0; /* datatype ID */ - hid_t tid_fixlen_str_array=0; /* datatype ID */ - const char *fixlen_str_array_buf[FIXLEN_STR_ARRY_DIM]= { - "1 - Fixed length string Array", - "2 - Fixed length string Array", - "3 - Fixed length string Array" - }; - hsize_t dims_fixlen_str_array[] = {FIXLEN_STR_ARRY_DIM}; + hid_t sid_fixlen_str_array = -1; /* dataspace ID */ + hid_t tid_fixlen_str_array_pre = -1; /* datatype ID */ + hid_t tid_fixlen_str_array = -1; /* datatype ID */ + const char *fixlen_str_array_buf[FIXLEN_STR_ARRY_DIM] = { + "1 - Fixed length string Array", "2 - Fixed length string Array", + "3 - Fixed length string Array" }; + hsize_t dims_fixlen_str_array[] = { FIXLEN_STR_ARRY_DIM }; /*------------------------------------------ - * compound dataset - *------------------------------------------*/ - hid_t sid_comp=0; /* dataspace ID */ - hid_t tid1_comp=0; /* datatype ID */ - hid_t tid2_comp=0; /* datatype ID */ - hid_t tid3_comp=0; /* datatype ID */ - hid_t tid4_comp=0; /* datatype ID */ - hid_t tid5_comp=0; /* datatype ID */ - hid_t tid6_comp=0; /* datatype ID */ - hid_t tid7_comp=0; /* datatype ID */ - hid_t tid8_comp=0; /* datatype ID */ - hid_t tid9_comp=0; /* datatype ID */ - hid_t did_comp=0; /* dataset ID */ - hsize_t dims_comp[] = {COMP_DIM}; - herr_t status = SUCCEED; + * compound dataset + *------------------------------------------*/ + hid_t sid_comp = -1; /* dataspace ID */ + hid_t tid1_comp = -1; /* datatype ID */ + hid_t tid2_comp = -1; /* datatype ID */ + hid_t tid3_comp = -1; /* datatype ID */ + hid_t tid4_comp = -1; /* datatype ID */ + hid_t tid5_comp = -1; /* datatype ID */ + hid_t tid6_comp = -1; /* datatype ID */ + hid_t tid7_comp = -1; /* datatype ID */ + hid_t tid8_comp = -1; /* datatype ID */ + hid_t tid9_comp = -1; /* datatype ID */ + hid_t did_comp = -1; /* dataset ID */ + hsize_t dims_comp[] = { COMP_DIM }; + herr_t status = SUCCEED; /* make compound strings data */ comp1_t comp1_buf; @@ -3756,23 +3527,30 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int HDstrcpy(comp9_buf.str_fixlen_repeat, fixlen_str_buf); /* copy vlen string array data to compound buffers */ - for (i=0; i < VLEN_STR_ARRY_DIM; i++) - { - comp1_buf.str_array_vlen[i] = comp1_buf.str_vlen_array_again[i] = vlen_str_array_buf[i]; - comp2_buf.str_array_vlen[i] = comp2_buf.str_vlen_array_again[i] = vlen_str_array_buf[i]; - comp3_buf.str_array_vlen[i] = comp3_buf.str_vlen_array_again[i] = vlen_str_array_buf[i]; - comp4_buf.str_array_vlen[i] = comp4_buf.str_vlen_array_again[i] = vlen_str_array_buf[i]; - comp5_buf.str_array_vlen[i] = comp5_buf.str_vlen_array_again[i] = vlen_str_array_buf[i]; - comp6_buf.str_array_vlen[i] = comp6_buf.str_vlen_array_again[i] = vlen_str_array_buf[i]; - comp7_buf.str_array_vlen[i] = comp7_buf.str_vlen_array_again[i] = vlen_str_array_buf[i]; - comp8_buf.str_array_vlen[i] = comp8_buf.str_vlen_array_again[i] = vlen_str_array_buf[i]; - comp9_buf.str_array_vlen[i] = comp9_buf.str_vlen_array_again[i] = vlen_str_array_buf[i]; + for (i = 0; i < VLEN_STR_ARRY_DIM; i++) { + comp1_buf.str_array_vlen[i] = comp1_buf.str_vlen_array_again[i] = + vlen_str_array_buf[i]; + comp2_buf.str_array_vlen[i] = comp2_buf.str_vlen_array_again[i] = + vlen_str_array_buf[i]; + comp3_buf.str_array_vlen[i] = comp3_buf.str_vlen_array_again[i] = + vlen_str_array_buf[i]; + comp4_buf.str_array_vlen[i] = comp4_buf.str_vlen_array_again[i] = + vlen_str_array_buf[i]; + comp5_buf.str_array_vlen[i] = comp5_buf.str_vlen_array_again[i] = + vlen_str_array_buf[i]; + comp6_buf.str_array_vlen[i] = comp6_buf.str_vlen_array_again[i] = + vlen_str_array_buf[i]; + comp7_buf.str_array_vlen[i] = comp7_buf.str_vlen_array_again[i] = + vlen_str_array_buf[i]; + comp8_buf.str_array_vlen[i] = comp8_buf.str_vlen_array_again[i] = + vlen_str_array_buf[i]; + comp9_buf.str_array_vlen[i] = comp9_buf.str_vlen_array_again[i] = + vlen_str_array_buf[i]; } /* copy fixlen string attay data to compound buffers */ - for (i=0; i < FIXLEN_STR_ARRY_DIM; i++) - { + for (i = 0; i < FIXLEN_STR_ARRY_DIM; i++) { HDstrcpy(comp1_buf.str_array_fixlen[i], fixlen_str_array_buf[i]); HDstrcpy(comp1_buf.str_fixlen_array_again[i], fixlen_str_array_buf[i]); @@ -3806,25 +3584,20 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int comp9_buf.int_data2 = 20; comp9_buf.int_data3 = 30; - /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ - if (is_file_new == 1) - { - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { + if (is_file_new == 1) { + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); status = FAIL; goto out; } } - else - { - fid1 = H5Fopen (fname1, H5F_ACC_RDWR, H5P_DEFAULT); - if (fid1 < 0) - { + else { + fid1 = H5Fopen(fname1, H5F_ACC_RDWR, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fopen failed.\n", fname1); status = FAIL; goto out; @@ -3835,8 +3608,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int * Create group *------------------------------------------------------------------------*/ gid = H5Gcreate2(fid1, grp_name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid < 0) - { + if (gid < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; @@ -3846,8 +3618,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int * Variable length String1 - Create space and type *------------------------------------------------------------------------*/ sid_vlen_str = H5Screate_simple(STR_RANK, dims_vlen_str, NULL); - if (sid_vlen_str < 0) - { + if (sid_vlen_str < 0) { fprintf(stderr, "Error: %s> H5Screate_simple failed.\n", fname1); status = FAIL; goto out; @@ -3855,8 +3626,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int tid_vlen_str = H5Tcopy(H5T_C_S1); status = H5Tset_size(tid_vlen_str, H5T_VARIABLE); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Tset_size failed.\n", fname1); status = FAIL; goto out; @@ -3866,8 +3636,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int * Fixed length String2 - Create space and type *------------------------------------------------------------------------*/ sid_fixlen_str = H5Screate_simple(STR_RANK, dims_fixlen_str, NULL); - if (sid_fixlen_str < 0) - { + if (sid_fixlen_str < 0) { fprintf(stderr, "Error: %s> H5Screate_simple failed.\n", fname1); status = FAIL; goto out; @@ -3875,8 +3644,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int tid_fixlen_str = H5Tcopy(H5T_C_S1); status = H5Tset_size(tid_fixlen_str, FIXLEN_STR_SIZE); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Tset_size failed.\n", fname1); status = FAIL; goto out; @@ -3886,8 +3654,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int * Fixed length String3 array - Create space and type *------------------------------------------------------------------------*/ sid_vlen_str_array = H5Screate_simple(STR_RANK, dims_vlen_str_array, NULL); - if (sid_vlen_str_array < 0) - { + if (sid_vlen_str_array < 0) { fprintf(stderr, "Error: %s> H5Screate_simple failed.\n", fname1); status = FAIL; goto out; @@ -3895,17 +3662,15 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int tid_vlen_str_array_pre = H5Tcopy(H5T_C_S1); status = H5Tset_size(tid_vlen_str_array_pre, H5T_VARIABLE); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Tset_size failed.\n", fname1); status = FAIL; goto out; } - /* Create the array data type for the string array */ + /* Create the array data type for the string array */ tid_vlen_str_array = H5Tarray_create2(tid_vlen_str_array_pre, COMP_RANK, dims_vlen_str_array); - if (tid_vlen_str_array < 0) - { + if (tid_vlen_str_array < 0) { fprintf(stderr, "Error: %s> H5Tarray_create2 failed.\n", fname1); status = FAIL; goto out; @@ -3915,8 +3680,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int * Variable length String4 array - Create space and type *------------------------------------------------------------------------*/ sid_fixlen_str_array = H5Screate_simple(STR_RANK, dims_fixlen_str_array, NULL); - if (sid_fixlen_str_array < 0) - { + if (sid_fixlen_str_array < 0) { fprintf(stderr, "Error: %s> H5Screate_simple failed.\n", fname1); status = FAIL; goto out; @@ -3924,126 +3688,123 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int tid_fixlen_str_array_pre = H5Tcopy(H5T_C_S1); status = H5Tset_size(tid_fixlen_str_array_pre, FIXLEN_STR_ARRY_SIZE); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Tset_size failed.\n", fname1); status = FAIL; goto out; } - /* Create the array data type for the string array */ + /* Create the array data type for the string array */ tid_fixlen_str_array = H5Tarray_create2(tid_fixlen_str_array_pre, COMP_RANK, dims_fixlen_str_array); - if (tid_fixlen_str_array < 0) - { + if (tid_fixlen_str_array < 0) { fprintf(stderr, "Error: %s> H5Tarray_create2 failed.\n", fname1); status = FAIL; goto out; } - /*------------------------------------------------------------------------- + /*------------------------------------------------------------------------- * Compound dataset *------------------------------------------------------------------------*/ sid_comp = H5Screate_simple(COMP_RANK, dims_comp, NULL); - if (sid_comp < 0) - { + if (sid_comp < 0) { fprintf(stderr, "Error: %s> H5Screate_simple failed.\n", fname1); status = FAIL; goto out; } - tid1_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp1_t)); - tid2_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp2_t)); - tid3_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp3_t)); - tid4_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp4_t)); - tid5_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp5_t)); - tid6_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp6_t)); - tid7_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp7_t)); - tid8_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp8_t)); - tid9_comp = H5Tcreate (H5T_COMPOUND, sizeof(comp9_t)); + tid1_comp = H5Tcreate(H5T_COMPOUND, sizeof(comp1_t)); + tid2_comp = H5Tcreate(H5T_COMPOUND, sizeof(comp2_t)); + tid3_comp = H5Tcreate(H5T_COMPOUND, sizeof(comp3_t)); + tid4_comp = H5Tcreate(H5T_COMPOUND, sizeof(comp4_t)); + tid5_comp = H5Tcreate(H5T_COMPOUND, sizeof(comp5_t)); + tid6_comp = H5Tcreate(H5T_COMPOUND, sizeof(comp6_t)); + tid7_comp = H5Tcreate(H5T_COMPOUND, sizeof(comp7_t)); + tid8_comp = H5Tcreate(H5T_COMPOUND, sizeof(comp8_t)); + tid9_comp = H5Tcreate(H5T_COMPOUND, sizeof(comp9_t)); /* compound 1 */ - H5Tinsert(tid1_comp, "VLEN_STR1", HOFFSET(comp1_t, str_vlen), tid_vlen_str ); - H5Tinsert(tid1_comp, "VLEN_STR2", HOFFSET(comp1_t, str_vlen_repeat), tid_vlen_str ); - H5Tinsert(tid1_comp, "FIXLEN_STR1", HOFFSET(comp1_t, str_fixlen), tid_fixlen_str ); - H5Tinsert(tid1_comp, "FIXLEN_STR2", HOFFSET(comp1_t, str_fixlen_repeat), tid_fixlen_str ); + H5Tinsert(tid1_comp, "VLEN_STR1", HOFFSET(comp1_t, str_vlen), tid_vlen_str); + H5Tinsert(tid1_comp, "VLEN_STR2", HOFFSET(comp1_t, str_vlen_repeat), tid_vlen_str); + H5Tinsert(tid1_comp, "FIXLEN_STR1", HOFFSET(comp1_t, str_fixlen), tid_fixlen_str); + H5Tinsert(tid1_comp, "FIXLEN_STR2", HOFFSET(comp1_t, str_fixlen_repeat), tid_fixlen_str); H5Tinsert(tid1_comp, "VLEN_STR_ARRAY1", HOFFSET(comp1_t, str_array_vlen), tid_vlen_str_array); H5Tinsert(tid1_comp, "VLEN_STR_ARRAY2", HOFFSET(comp1_t, str_vlen_array_again), tid_vlen_str_array); H5Tinsert(tid1_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp1_t, str_array_fixlen), tid_fixlen_str_array); H5Tinsert(tid1_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp1_t, str_fixlen_array_again), tid_fixlen_str_array); /* compound 2 */ - H5Tinsert(tid2_comp, "VLEN_STR1", HOFFSET(comp2_t, str_vlen), tid_vlen_str ); - H5Tinsert(tid2_comp, "VLEN_STR2", HOFFSET(comp2_t, str_vlen_repeat), tid_vlen_str ); - H5Tinsert(tid2_comp, "FIXLEN_STR1", HOFFSET(comp2_t, str_fixlen), tid_fixlen_str ); - H5Tinsert(tid2_comp, "FIXLEN_STR2", HOFFSET(comp2_t, str_fixlen_repeat), tid_fixlen_str ); + H5Tinsert(tid2_comp, "VLEN_STR1", HOFFSET(comp2_t, str_vlen), tid_vlen_str); + H5Tinsert(tid2_comp, "VLEN_STR2", HOFFSET(comp2_t, str_vlen_repeat), tid_vlen_str); + H5Tinsert(tid2_comp, "FIXLEN_STR1", HOFFSET(comp2_t, str_fixlen), tid_fixlen_str); + H5Tinsert(tid2_comp, "FIXLEN_STR2", HOFFSET(comp2_t, str_fixlen_repeat), tid_fixlen_str); H5Tinsert(tid2_comp, "VLEN_STR_ARRAY1", HOFFSET(comp2_t, str_array_vlen), tid_vlen_str_array); H5Tinsert(tid2_comp, "VLEN_STR_ARRAY2", HOFFSET(comp2_t, str_vlen_array_again), tid_vlen_str_array); H5Tinsert(tid2_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp2_t, str_array_fixlen), tid_fixlen_str_array); H5Tinsert(tid2_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp2_t, str_fixlen_array_again), tid_fixlen_str_array); /* compound 3 */ - H5Tinsert(tid3_comp, "VLEN_STR1", HOFFSET(comp3_t, str_vlen), tid_vlen_str ); - H5Tinsert(tid3_comp, "VLEN_STR2", HOFFSET(comp3_t, str_vlen_repeat), tid_vlen_str ); - H5Tinsert(tid3_comp, "FIXLEN_STR1", HOFFSET(comp3_t, str_fixlen), tid_fixlen_str ); - H5Tinsert(tid3_comp, "FIXLEN_STR2", HOFFSET(comp3_t, str_fixlen_repeat), tid_fixlen_str ); + H5Tinsert(tid3_comp, "VLEN_STR1", HOFFSET(comp3_t, str_vlen), tid_vlen_str); + H5Tinsert(tid3_comp, "VLEN_STR2", HOFFSET(comp3_t, str_vlen_repeat), tid_vlen_str); + H5Tinsert(tid3_comp, "FIXLEN_STR1", HOFFSET(comp3_t, str_fixlen), tid_fixlen_str); + H5Tinsert(tid3_comp, "FIXLEN_STR2", HOFFSET(comp3_t, str_fixlen_repeat), tid_fixlen_str); H5Tinsert(tid3_comp, "VLEN_STR_ARRAY1", HOFFSET(comp3_t, str_array_vlen), tid_vlen_str_array); H5Tinsert(tid3_comp, "VLEN_STR_ARRAY2", HOFFSET(comp3_t, str_vlen_array_again), tid_vlen_str_array); H5Tinsert(tid3_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp3_t, str_array_fixlen), tid_fixlen_str_array); H5Tinsert(tid3_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp3_t, str_fixlen_array_again), tid_fixlen_str_array); /* compound 4 */ - H5Tinsert(tid4_comp, "VLEN_STR1", HOFFSET(comp4_t, str_vlen), tid_vlen_str ); - H5Tinsert(tid4_comp, "VLEN_STR2", HOFFSET(comp4_t, str_vlen_repeat), tid_vlen_str ); - H5Tinsert(tid4_comp, "FIXLEN_STR1", HOFFSET(comp4_t, str_fixlen), tid_fixlen_str ); - H5Tinsert(tid4_comp, "FIXLEN_STR2", HOFFSET(comp4_t, str_fixlen_repeat), tid_fixlen_str ); + H5Tinsert(tid4_comp, "VLEN_STR1", HOFFSET(comp4_t, str_vlen), tid_vlen_str); + H5Tinsert(tid4_comp, "VLEN_STR2", HOFFSET(comp4_t, str_vlen_repeat), tid_vlen_str); + H5Tinsert(tid4_comp, "FIXLEN_STR1", HOFFSET(comp4_t, str_fixlen), tid_fixlen_str); + H5Tinsert(tid4_comp, "FIXLEN_STR2", HOFFSET(comp4_t, str_fixlen_repeat), tid_fixlen_str); H5Tinsert(tid4_comp, "VLEN_STR_ARRAY1", HOFFSET(comp4_t, str_array_vlen), tid_vlen_str_array); H5Tinsert(tid4_comp, "VLEN_STR_ARRAY2", HOFFSET(comp4_t, str_vlen_array_again), tid_vlen_str_array); H5Tinsert(tid4_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp4_t, str_array_fixlen), tid_fixlen_str_array); H5Tinsert(tid4_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp4_t, str_fixlen_array_again), tid_fixlen_str_array); /* compound 5 */ - H5Tinsert(tid5_comp, "VLEN_STR1", HOFFSET(comp5_t, str_vlen), tid_vlen_str ); - H5Tinsert(tid5_comp, "VLEN_STR2", HOFFSET(comp5_t, str_vlen_repeat), tid_vlen_str ); - H5Tinsert(tid5_comp, "FIXLEN_STR1", HOFFSET(comp5_t, str_fixlen), tid_fixlen_str ); - H5Tinsert(tid5_comp, "FIXLEN_STR2", HOFFSET(comp5_t, str_fixlen_repeat), tid_fixlen_str ); + H5Tinsert(tid5_comp, "VLEN_STR1", HOFFSET(comp5_t, str_vlen), tid_vlen_str); + H5Tinsert(tid5_comp, "VLEN_STR2", HOFFSET(comp5_t, str_vlen_repeat), tid_vlen_str); + H5Tinsert(tid5_comp, "FIXLEN_STR1", HOFFSET(comp5_t, str_fixlen), tid_fixlen_str); + H5Tinsert(tid5_comp, "FIXLEN_STR2", HOFFSET(comp5_t, str_fixlen_repeat), tid_fixlen_str); H5Tinsert(tid5_comp, "VLEN_STR_ARRAY1", HOFFSET(comp5_t, str_array_vlen), tid_vlen_str_array); - H5Tinsert(tid5_comp, "VLEN_STR_ARRAY2", HOFFSET(comp5_t, str_vlen_array_again), tid_vlen_str_array); + H5Tinsert(tid5_comp, "VLEN_STR_ARRAY2", HOFFSET(comp5_t, str_vlen_array_again), tid_vlen_str_array); H5Tinsert(tid5_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp5_t, str_array_fixlen), tid_fixlen_str_array); H5Tinsert(tid5_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp5_t, str_fixlen_array_again), tid_fixlen_str_array); /* compound 6 */ - H5Tinsert(tid6_comp, "VLEN_STR1", HOFFSET(comp6_t, str_vlen), tid_vlen_str ); - H5Tinsert(tid6_comp, "VLEN_STR2", HOFFSET(comp6_t, str_vlen_repeat), tid_vlen_str ); - H5Tinsert(tid6_comp, "FIXLEN_STR1", HOFFSET(comp6_t, str_fixlen), tid_fixlen_str ); - H5Tinsert(tid6_comp, "FIXLEN_STR2", HOFFSET(comp6_t, str_fixlen_repeat), tid_fixlen_str ); + H5Tinsert(tid6_comp, "VLEN_STR1", HOFFSET(comp6_t, str_vlen), tid_vlen_str); + H5Tinsert(tid6_comp, "VLEN_STR2", HOFFSET(comp6_t, str_vlen_repeat), tid_vlen_str); + H5Tinsert(tid6_comp, "FIXLEN_STR1", HOFFSET(comp6_t, str_fixlen), tid_fixlen_str); + H5Tinsert(tid6_comp, "FIXLEN_STR2", HOFFSET(comp6_t, str_fixlen_repeat), tid_fixlen_str); H5Tinsert(tid6_comp, "VLEN_STR_ARRAY1", HOFFSET(comp6_t, str_array_vlen), tid_vlen_str_array); H5Tinsert(tid6_comp, "VLEN_STR_ARRAY2", HOFFSET(comp6_t, str_vlen_array_again), tid_vlen_str_array); H5Tinsert(tid6_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp6_t, str_array_fixlen), tid_fixlen_str_array); H5Tinsert(tid6_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp6_t, str_fixlen_array_again), tid_fixlen_str_array); /* compound 7 */ - H5Tinsert(tid7_comp, "VLEN_STR1", HOFFSET(comp7_t, str_vlen), tid_vlen_str ); - H5Tinsert(tid7_comp, "VLEN_STR2", HOFFSET(comp7_t, str_vlen_repeat), tid_vlen_str ); - H5Tinsert(tid7_comp, "FIXLEN_STR1", HOFFSET(comp7_t, str_fixlen), tid_fixlen_str ); - H5Tinsert(tid7_comp, "FIXLEN_STR2", HOFFSET(comp7_t, str_fixlen_repeat), tid_fixlen_str ); + H5Tinsert(tid7_comp, "VLEN_STR1", HOFFSET(comp7_t, str_vlen), tid_vlen_str); + H5Tinsert(tid7_comp, "VLEN_STR2", HOFFSET(comp7_t, str_vlen_repeat), tid_vlen_str); + H5Tinsert(tid7_comp, "FIXLEN_STR1", HOFFSET(comp7_t, str_fixlen), tid_fixlen_str); + H5Tinsert(tid7_comp, "FIXLEN_STR2", HOFFSET(comp7_t, str_fixlen_repeat), tid_fixlen_str); H5Tinsert(tid7_comp, "VLEN_STR_ARRAY1", HOFFSET(comp7_t, str_array_vlen), tid_vlen_str_array); H5Tinsert(tid7_comp, "VLEN_STR_ARRAY2", HOFFSET(comp7_t, str_vlen_array_again), tid_vlen_str_array); H5Tinsert(tid7_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp7_t, str_array_fixlen), tid_fixlen_str_array); H5Tinsert(tid7_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp7_t, str_fixlen_array_again), tid_fixlen_str_array); /* compound 8 */ - H5Tinsert(tid8_comp, "VLEN_STR1", HOFFSET(comp8_t, str_vlen), tid_vlen_str ); - H5Tinsert(tid8_comp, "VLEN_STR2", HOFFSET(comp8_t, str_vlen_repeat), tid_vlen_str ); - H5Tinsert(tid8_comp, "FIXLEN_STR1", HOFFSET(comp8_t, str_fixlen), tid_fixlen_str ); - H5Tinsert(tid8_comp, "FIXLEN_STR2", HOFFSET(comp8_t, str_fixlen_repeat), tid_fixlen_str ); + H5Tinsert(tid8_comp, "VLEN_STR1", HOFFSET(comp8_t, str_vlen), tid_vlen_str); + H5Tinsert(tid8_comp, "VLEN_STR2", HOFFSET(comp8_t, str_vlen_repeat), tid_vlen_str); + H5Tinsert(tid8_comp, "FIXLEN_STR1", HOFFSET(comp8_t, str_fixlen), tid_fixlen_str); + H5Tinsert(tid8_comp, "FIXLEN_STR2", HOFFSET(comp8_t, str_fixlen_repeat), tid_fixlen_str); H5Tinsert(tid8_comp, "VLEN_STR_ARRAY1", HOFFSET(comp8_t, str_array_vlen), tid_vlen_str_array); H5Tinsert(tid8_comp, "VLEN_STR_ARRAY2", HOFFSET(comp8_t, str_vlen_array_again), tid_vlen_str_array); H5Tinsert(tid8_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp8_t, str_array_fixlen), tid_fixlen_str_array); H5Tinsert(tid8_comp, "FIXLEN_STR_ARRAY2", HOFFSET(comp8_t, str_fixlen_array_again), tid_fixlen_str_array); /* compound 9 */ - H5Tinsert(tid9_comp, "VLEN_STR1", HOFFSET(comp9_t, str_vlen), tid_vlen_str ); - H5Tinsert(tid9_comp, "VLEN_STR2", HOFFSET(comp9_t, str_vlen_repeat), tid_vlen_str ); - H5Tinsert(tid9_comp, "FIXLEN_STR1", HOFFSET(comp9_t, str_fixlen), tid_fixlen_str ); - H5Tinsert(tid9_comp, "FIXLEN_STR2", HOFFSET(comp9_t, str_fixlen_repeat), tid_fixlen_str ); + H5Tinsert(tid9_comp, "VLEN_STR1", HOFFSET(comp9_t, str_vlen), tid_vlen_str); + H5Tinsert(tid9_comp, "VLEN_STR2", HOFFSET(comp9_t, str_vlen_repeat), tid_vlen_str); + H5Tinsert(tid9_comp, "FIXLEN_STR1", HOFFSET(comp9_t, str_fixlen), tid_fixlen_str); + H5Tinsert(tid9_comp, "FIXLEN_STR2", HOFFSET(comp9_t, str_fixlen_repeat), tid_fixlen_str); H5Tinsert(tid9_comp, "VLEN_STR_ARRAY1", HOFFSET(comp9_t, str_array_vlen), tid_vlen_str_array); H5Tinsert(tid9_comp, "VLEN_STR_ARRAY2", HOFFSET(comp9_t, str_vlen_array_again), tid_vlen_str_array); H5Tinsert(tid9_comp, "FIXLEN_STR_ARRAY1", HOFFSET(comp9_t, str_array_fixlen), tid_fixlen_str_array); @@ -4055,12 +3816,10 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int H5Tinsert(tid9_comp, "OBJREF2", HOFFSET(comp9_t, objref2), H5T_STD_REF_OBJ); H5Tinsert(tid9_comp, "OBJREF3", HOFFSET(comp9_t, objref3), H5T_STD_REF_OBJ); - /* Write data to compound 1 dataset buffer */ did_comp = H5Dcreate2(gid, "Compound_dset1", tid1_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did_comp, tid1_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp1_buf); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1); status = FAIL; goto out; @@ -4070,8 +3829,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int /* Write data to compound 2 dataset buffer */ did_comp = H5Dcreate2(gid, "Compound_dset2", tid2_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did_comp, tid2_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp2_buf); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1); status = FAIL; goto out; @@ -4081,8 +3839,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int /* Write data to compound 3 dataset buffer */ did_comp = H5Dcreate2(gid, "Compound_dset3", tid3_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did_comp, tid3_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp3_buf); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1); status = FAIL; goto out; @@ -4092,8 +3849,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int /* Write data to compound 4 dataset buffer */ did_comp = H5Dcreate2(gid, "Compound_dset4", tid4_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did_comp, tid4_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp4_buf); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1); status = FAIL; goto out; @@ -4103,8 +3859,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int /* Write data to compound 5 dataset buffer */ did_comp = H5Dcreate2(gid, "Compound_dset5", tid5_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did_comp, tid5_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp5_buf); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1); status = FAIL; goto out; @@ -4114,8 +3869,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int /* Write data to compound 6 dataset buffer */ did_comp = H5Dcreate2(gid, "Compound_dset6", tid6_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did_comp, tid6_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp6_buf); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1); status = FAIL; goto out; @@ -4125,8 +3879,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int /* Write data to compound 7 dataset buffer */ did_comp = H5Dcreate2(gid, "Compound_dset7", tid7_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did_comp, tid7_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp7_buf); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1); status = FAIL; goto out; @@ -4136,8 +3889,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int /* Write data to compound 8 dataset buffer */ did_comp = H5Dcreate2(gid, "Compound_dset8", tid8_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did_comp, tid8_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp8_buf); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1); status = FAIL; goto out; @@ -4148,166 +3900,158 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int did_comp = H5Dcreate2(gid, "Compound_dset9", tid9_comp, sid_comp, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* obj references */ - status=H5Rcreate(&(comp9_buf.objref1),gid,"Compound_dset2",H5R_OBJECT,(hid_t)-1); - status=H5Rcreate(&(comp9_buf.objref2),gid,"Compound_dset3",H5R_OBJECT,(hid_t)-1); - status=H5Rcreate(&(comp9_buf.objref3),gid,"Compound_dset4",H5R_OBJECT,(hid_t)-1); + status = H5Rcreate(&(comp9_buf.objref1), gid, "Compound_dset2", H5R_OBJECT, (hid_t) -1); + status = H5Rcreate(&(comp9_buf.objref2), gid, "Compound_dset3", H5R_OBJECT, (hid_t) -1); + status = H5Rcreate(&(comp9_buf.objref3), gid, "Compound_dset4", H5R_OBJECT, (hid_t) -1); status = H5Dwrite(did_comp, tid9_comp, H5S_ALL, H5S_ALL, H5P_DEFAULT, &comp9_buf); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", fname1); status = FAIL; goto out; } - H5Dclose(did_comp); + did_comp = -1; - did_comp=0; out: - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1 > 0) + if (fid1 > 0) H5Fclose(fid1); - if(gid > 0) + if (gid > 0) H5Gclose(gid); /* vlen string */ - if(tid_vlen_str > 0) + if (tid_vlen_str > 0) H5Tclose(tid_vlen_str); - if(sid_vlen_str > 0) + if (sid_vlen_str > 0) H5Sclose(sid_vlen_str); /* fixed len string */ - if(tid_fixlen_str > 0) + if (tid_fixlen_str > 0) H5Tclose(tid_fixlen_str); - if(sid_fixlen_str > 0) + if (sid_fixlen_str > 0) H5Sclose(sid_fixlen_str); /* vlen string array */ - if(tid_vlen_str_array_pre > 0) + if (tid_vlen_str_array_pre > 0) H5Tclose(tid_vlen_str_array_pre); - if(tid_vlen_str_array > 0) + if (tid_vlen_str_array > 0) H5Tclose(tid_vlen_str_array); - if(sid_vlen_str_array > 0) + if (sid_vlen_str_array > 0) H5Sclose(sid_vlen_str_array); /* fixed len string array */ - if(tid_fixlen_str_array_pre > 0) + if (tid_fixlen_str_array_pre > 0) H5Tclose(tid_fixlen_str_array_pre); - if(tid_fixlen_str_array > 0) + if (tid_fixlen_str_array > 0) H5Tclose(tid_fixlen_str_array); - if(sid_fixlen_str_array > 0) + if (sid_fixlen_str_array > 0) H5Sclose(sid_fixlen_str_array); /* compound */ - if(tid1_comp > 0) + if (tid1_comp > 0) H5Tclose(tid1_comp); - if(tid2_comp > 0) + if (tid2_comp > 0) H5Tclose(tid2_comp); - if(tid3_comp > 0) + if (tid3_comp > 0) H5Tclose(tid3_comp); - if(tid4_comp > 0) + if (tid4_comp > 0) H5Tclose(tid4_comp); - if(tid5_comp > 0) + if (tid5_comp > 0) H5Tclose(tid5_comp); - if(tid6_comp > 0) + if (tid6_comp > 0) H5Tclose(tid6_comp); - if(tid7_comp > 0) + if (tid7_comp > 0) H5Tclose(tid7_comp); - if(tid8_comp > 0) + if (tid8_comp > 0) H5Tclose(tid8_comp); - if(tid9_comp > 0) + if (tid9_comp > 0) H5Tclose(tid9_comp); - if(did_comp > 0) + if (did_comp > 0) H5Dclose(did_comp); - if(sid_comp > 0) + if (sid_comp > 0) H5Sclose(sid_comp); return status; } /* end test_comp_vlen_strings() */ - /*------------------------------------------------------------------------- -* -* Purpose: Test diffs of enum values which may include invalid values. -* -* Programmer: Dana Robinson -* -*-------------------------------------------------------------------------*/ - -static int -test_enums(const char *fname) + * + * Purpose: Test diffs of enum values which may include invalid values. + * + * Programmer: Dana Robinson + * + *-------------------------------------------------------------------------*/ + +static int test_enums(const char *fname) { - hid_t fid = -1; + hid_t fid = -1; - hid_t tid = -1; - int enum_val = -1; + hid_t tid = -1; + int enum_val = -1; /* The data in the two arrays cover the following cases: - * - * V = valid enum value, I = invalid enum value - * - * 0: I-I (same value) - * 1: V-I - * 2: I-V - * 3: V-V (same value) - * 4: I-I (different values) SKIPPED FOR NOW - * 5: V-V (different values) - */ + * + * V = valid enum value, I = invalid enum value + * + * 0: I-I (same value) + * 1: V-I + * 2: I-V + * 3: V-V (same value) + * 4: I-I (different values) SKIPPED FOR NOW + * 5: V-V (different values) + */ /* *** NOTE *** - * - * There is a bug in H5Dread() where invalid enum values are always - * returned as -1 so two different invalid enum values cannot be - * properly compared. Test 4 has been adjusted to pass here - * while we fix the issue. - */ - int data1[6] = {9, 0, 9, 0, 9, 0}; + * + * There is a bug in H5Dread() where invalid enum values are always + * returned as -1 so two different invalid enum values cannot be + * properly compared. Test 4 has been adjusted to pass here + * while we fix the issue. + */ + int data1[6] = { 9, 0, 9, 0, 9, 0 }; /*int data1[6] = {9, 0, 9, 0, 8, 0}; */ - int data2[6] = {9, 9, 0, 0, 9, 1}; + int data2[6] = { 9, 9, 0, 0, 9, 1 }; - hsize_t dims = 6; + hsize_t dims = 6; - herr_t status = SUCCEED; + herr_t status = SUCCEED; /*----------------------------------------------------------------------- - * Create the file - *---------------------------------------------------------------------*/ + * Create the file + *---------------------------------------------------------------------*/ fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /*----------------------------------------------------------------------- - * Create enum types - *---------------------------------------------------------------------*/ + * Create enum types + *---------------------------------------------------------------------*/ tid = H5Tenum_create(H5T_NATIVE_INT); enum_val = 0; status = H5Tenum_insert(tid, "YIN", &enum_val); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Tenum_insert failed.\n", fname); status = FAIL; goto out; } enum_val = 1; status = H5Tenum_insert(tid, "YANG", &enum_val); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Tenum_insert failed.\n", fname); status = FAIL; goto out; } /*----------------------------------------------------------------------- - * Create datasets containing enum data. - *---------------------------------------------------------------------*/ + * Create datasets containing enum data. + *---------------------------------------------------------------------*/ status = write_dset(fid, 1, &dims, "dset1", tid, data1); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> write_dset failed.\n", fname); status = FAIL; goto out; } status = write_dset(fid, 1, &dims, "dset2", tid, data2); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> write_dset failed.\n", fname); status = FAIL; goto out; @@ -4315,41 +4059,41 @@ test_enums(const char *fname) out: /*----------------------------------------------------------------------- - * Close - *---------------------------------------------------------------------*/ - if(fid) + * Close + *---------------------------------------------------------------------*/ + if (fid) H5Fclose(fid); - if(tid) + if (tid) H5Tclose(tid); return status; } /*------------------------------------------------------------------------- -* -* Purpose: -* Create test files with dataset and attribute with container types -* (array, vlen) with multiple nested compound types. -* -* Function: test_comps_array() -* - type: compound->array->compound -* -* Function: test_comps_vlen() -* - type: compound->vlen->compound -* -* Function: test_comps_array_vlen() -* - type: compound->array->compound->vlen->compound -* -* Function: test_comps_vlen_arry() -* - type: compound->vlen->compound->array->compound -* -* Programmer: Jonathan Kim (Sep, 1, 2011) -* -*-------------------------------------------------------------------------*/ + * + * Purpose: + * Create test files with dataset and attribute with container types + * (array, vlen) with multiple nested compound types. + * + * Function: test_comps_array() + * - type: compound->array->compound + * + * Function: test_comps_vlen() + * - type: compound->vlen->compound + * + * Function: test_comps_array_vlen() + * - type: compound->array->compound->vlen->compound + * + * Function: test_comps_vlen_arry() + * - type: compound->vlen->compound->array->compound + * + * Programmer: Jonathan Kim (Sep, 1, 2011) + * + *-------------------------------------------------------------------------*/ #define SDIM_DSET 2 #define SDIM_CMPD_ARRAY 2 -static void test_comps_array (const char *fname, const char *dset, const char *attr,int diff, int is_file_new) +static void test_comps_array(const char *fname, const char *dset, const char *attr, int diff, int is_file_new) { /* sub compound 2 */ typedef struct { @@ -4363,42 +4107,39 @@ static void test_comps_array (const char *fname, const char *dset, const char *a cmpd2_t cmpd2[SDIM_CMPD_ARRAY]; } cmpd1_t; - cmpd1_t wdata[SDIM_DSET]; /* dataset with compound1 */ + cmpd1_t wdata[SDIM_DSET]; /* dataset with compound1 */ - hid_t fid; /* HDF5 File IDs */ - hid_t did_dset; /* Dataset ID */ - hid_t sid_dset; /* Dataset space ID */ - hid_t tid_cmpd1; /* Compound1 type ID */ - hid_t tid_arry1; /* Array type ID in compound1 */ - hid_t tid_cmpd2; /* Compound2 type ID */ - hid_t tid_attr; - hsize_t sdims_dset[] = {SDIM_DSET}; - hsize_t sdims_cmpd_arry[] = {SDIM_CMPD_ARRAY}; - int i,j; - herr_t ret; /* Generic return value */ + hid_t fid = -1; /* HDF5 File IDs */ + hid_t did_dset = -1; /* Dataset ID */ + hid_t sid_dset = -1; /* Dataset space ID */ + hid_t tid_cmpd1 = -1; /* Compound1 type ID */ + hid_t tid_arry1 = -1; /* Array type ID in compound1 */ + hid_t tid_cmpd2 = -1; /* Compound2 type ID */ + hid_t tid_attr = -1; + hsize_t sdims_dset[] = { SDIM_DSET }; + hsize_t sdims_cmpd_arry[] = { SDIM_CMPD_ARRAY }; + int i, j; + herr_t ret; /* Generic return value */ /* Initialize array data to write */ - for(i=0; i < SDIM_DSET; i++) - { + for (i = 0; i < SDIM_DSET; i++) { wdata[i].i1 = i; - for(j=0; j < SDIM_CMPD_ARRAY; j++) - { + for (j = 0; j < SDIM_CMPD_ARRAY; j++) { wdata[i].cmpd2[j].i2 = i * 10 + diff; - wdata[i].cmpd2[j].f2 = (float)i * 10.5F + (float)diff; + wdata[i].cmpd2[j].f2 = (float) i * 10.5F + (float) diff; } /* end for */ } - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ if (is_file_new == 1) fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); else - fid = H5Fopen (fname, H5F_ACC_RDWR, H5P_DEFAULT); - + fid = H5Fopen(fname, H5F_ACC_RDWR, H5P_DEFAULT); /* ------------------------------- - * Create a sub compound2 datatype */ + * Create a sub compound2 datatype */ tid_cmpd2 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd2_t)); /* Insert integer field */ @@ -4410,9 +4151,9 @@ static void test_comps_array (const char *fname, const char *dset, const char *a assert(ret >= 0); /*----------------------------------- - * Create a top compound1. - */ - tid_cmpd1 = H5Tcreate (H5T_COMPOUND, sizeof(cmpd1_t)); + * Create a top compound1. + */ + tid_cmpd1 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd1_t)); ret = H5Tinsert(tid_cmpd1, "int1", HOFFSET(cmpd1_t, i1), H5T_NATIVE_INT); assert(ret >= 0); @@ -4423,10 +4164,9 @@ static void test_comps_array (const char *fname, const char *dset, const char *a ret = H5Tinsert(tid_cmpd1, "array_cmpd1", HOFFSET(cmpd1_t, cmpd2), tid_arry1); assert(ret >= 0); - /* ------------------- - * Create a dataset - */ + * Create a dataset + */ /* Create dataspace for datasets */ sid_dset = H5Screate_simple(1, sdims_dset, NULL); @@ -4437,15 +4177,15 @@ static void test_comps_array (const char *fname, const char *dset, const char *a assert(ret >= 0); /*----------------------------------- - * Create an attribute in root group - */ + * Create an attribute in root group + */ tid_attr = H5Acreate2(fid, attr, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT); assert(tid_attr > 0); ret = H5Awrite(tid_attr, tid_cmpd1, wdata); assert(ret >= 0); /* ---------------- - * Close Dataset */ + * Close Dataset */ ret = H5Aclose(tid_attr); assert(ret >= 0); ret = H5Tclose(tid_arry1); @@ -4462,9 +4202,7 @@ static void test_comps_array (const char *fname, const char *dset, const char *a assert(ret >= 0); } - - -static void test_comps_vlen (const char * fname, const char *dset, const char *attr, int diff, int is_file_new) +static void test_comps_vlen(const char * fname, const char *dset, const char *attr, int diff, int is_file_new) { /* sub compound 2 */ typedef struct { @@ -4475,44 +4213,46 @@ static void test_comps_vlen (const char * fname, const char *dset, const char *a /* top compound 1 */ typedef struct { int i1; - hvl_t vl; /* VL information for compound2 */ + hvl_t vl; /* VL information for compound2 */ } cmpd1_t; - cmpd1_t wdata[SDIM_DSET]; /* Dataset for compound1 */ + cmpd1_t wdata[SDIM_DSET]; /* Dataset for compound1 */ - hid_t fid; /* HDF5 File ID */ - hid_t did_dset; /* dataset ID */ - hid_t sid_dset; /* dataset space ID */ - hid_t tid_attr; - hid_t tid_cmpd2; /* compound2 type ID */ - hid_t tid_cmpd1; /* compound1 type ID */ - hid_t tid_cmpd1_vlen; - hsize_t sdims_dset[] = {SDIM_DSET}; + hid_t fid = -1; /* HDF5 File ID */ + hid_t did_dset = -1; /* dataset ID */ + hid_t sid_dset = -1; /* dataset space ID */ + hid_t tid_attr = -1; + hid_t tid_cmpd2 = -1; /* compound2 type ID */ + hid_t tid_cmpd1 = -1; /* compound1 type ID */ + hid_t tid_cmpd1_vlen = -1; + hsize_t sdims_dset[] = { SDIM_DSET }; - unsigned i,j; /* counting variables */ - herr_t ret; /* Generic return value */ + unsigned i, j; /* counting variables */ + herr_t ret; /* Generic return value */ /* Allocate and initialize VL data to write */ - for(i = 0; i < SDIM_DSET; i++) { - wdata[i].i1 = (int)i; + for (i = 0; i < SDIM_DSET; i++) { + wdata[i].i1 = (int) i; wdata[i].vl.p = HDmalloc((i + 1) * sizeof(cmpd2_t)); wdata[i].vl.len = i + 1; - for(j = 0; j < (i + 1); j++) { - ((cmpd2_t *)wdata[i].vl.p)[j].i2 = (int)(i * 10 + (unsigned)diff); - ((cmpd2_t *)wdata[i].vl.p)[j].f2 = (float)i * 10.5F + (float)diff; + for (j = 0; j < (i + 1); j++) { + ((cmpd2_t *) wdata[i].vl.p)[j].i2 = + (int) (i * 10 + (unsigned) diff); + ((cmpd2_t *) wdata[i].vl.p)[j].f2 = (float) i * 10.5F + + (float) diff; } /* end for */ } /* end for */ /*----------------------------------------------------------------------- - * Create file(s) - *------------------------------------------------------------------------*/ + * Create file(s) + *------------------------------------------------------------------------*/ if (is_file_new == 1) fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); else - fid = H5Fopen (fname, H5F_ACC_RDWR, H5P_DEFAULT); + fid = H5Fopen(fname, H5F_ACC_RDWR, H5P_DEFAULT); /* ----------------------------- - * Create sub compound2 type */ + * Create sub compound2 type */ tid_cmpd2 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd2_t)); /* Insert fields */ @@ -4522,7 +4262,7 @@ static void test_comps_vlen (const char * fname, const char *dset, const char *a assert(ret >= 0); /* --------------------------- - * Create top compound1 type */ + * Create top compound1 type */ tid_cmpd1 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd1_t)); /* Insert fields */ ret = H5Tinsert(tid_cmpd1, "int1", HOFFSET(cmpd1_t, i1), H5T_NATIVE_INT); @@ -4534,8 +4274,8 @@ static void test_comps_vlen (const char * fname, const char *dset, const char *a assert(ret >= 0); /* ------------------------------- - * Create dataset with compound1 - */ + * Create dataset with compound1 + */ /* Create dataspace for dataset */ sid_dset = H5Screate_simple(1, sdims_dset, NULL); @@ -4547,8 +4287,8 @@ static void test_comps_vlen (const char * fname, const char *dset, const char *a assert(ret >= 0); /*----------------------------------- - * Create an attribute in root group - */ + * Create an attribute in root group + */ tid_attr = H5Acreate2(fid, attr, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT); assert(tid_attr > 0); ret = H5Awrite(tid_attr, tid_cmpd1, wdata); @@ -4559,7 +4299,7 @@ static void test_comps_vlen (const char * fname, const char *dset, const char *a assert(ret >= 0); /* ---------------- - * Close IDs */ + * Close IDs */ ret = H5Aclose(tid_attr); assert(ret >= 0); ret = H5Dclose(did_dset); @@ -4576,17 +4316,16 @@ static void test_comps_vlen (const char * fname, const char *dset, const char *a assert(ret >= 0); } - -static void test_comps_array_vlen (const char * fname, const char *dset,const char *attr, int diff, int is_file_new) +static void test_comps_array_vlen(const char * fname, const char *dset, const char *attr, int diff, int is_file_new) { typedef struct { int i3; float f3; } cmpd3_t; - typedef struct { /* Typedef for compound datatype */ + typedef struct { /* Typedef for compound datatype */ int i2; - hvl_t vl; /* VL information to write */ + hvl_t vl; /* VL information to write */ } cmpd2_t; typedef struct { @@ -4594,53 +4333,53 @@ static void test_comps_array_vlen (const char * fname, const char *dset,const ch cmpd2_t cmpd2[SDIM_CMPD_ARRAY]; } cmpd1_t; - cmpd1_t wdata[SDIM_DSET]; /* Information to write */ - hid_t fid; /* HDF5 File IDs */ - hid_t did_dset; /* Dataset ID */ - hid_t sid_dset; /* Dataspace ID */ - hid_t tid_attr; - hid_t tid_cmpd1; /* Compound1 Datatype ID */ - hid_t tid_arry1; /* Array Datatype ID */ - hid_t tid_cmpd2; /* Compound2 Datatype ID */ - hid_t tid_cmpd2_vlen; - hid_t tid_cmpd3; /* Compound3 Datatype ID */ - hsize_t sdims_dset[] = {SDIM_DSET}; - hsize_t sdims_arry[] = {SDIM_CMPD_ARRAY}; - unsigned i, j, k; /* counting variables */ - herr_t ret; /* Generic return value */ - - + cmpd1_t wdata[SDIM_DSET]; /* Information to write */ + hid_t fid = -1; /* HDF5 File IDs */ + hid_t did_dset = -1; /* Dataset ID */ + hid_t sid_dset = -1; /* Dataspace ID */ + hid_t tid_attr = -1; + hid_t tid_cmpd1 = -1; /* Compound1 Datatype ID */ + hid_t tid_arry1 = -1; /* Array Datatype ID */ + hid_t tid_cmpd2 = -1; /* Compound2 Datatype ID */ + hid_t tid_cmpd2_vlen = -1; + hid_t tid_cmpd3 = -1; /* Compound3 Datatype ID */ + hsize_t sdims_dset[] = { SDIM_DSET }; + hsize_t sdims_arry[] = { SDIM_CMPD_ARRAY }; + unsigned i, j, k; /* counting variables */ + herr_t ret; /* Generic return value */ /* Initialize array data to write in compound1 */ - for(i = 0; i < SDIM_DSET; i++) { - wdata[i].i1 = (int)i; + for (i = 0; i < SDIM_DSET; i++) { + wdata[i].i1 = (int) i; /* Allocate and initialize VL data to write in compound2 */ - for(j = 0; j < SDIM_CMPD_ARRAY; j++) { - wdata[i].cmpd2[j].i2 = (int)(j * 10); + for (j = 0; j < SDIM_CMPD_ARRAY; j++) { + wdata[i].cmpd2[j].i2 = (int) (j * 10); wdata[i].cmpd2[j].vl.p = HDmalloc((j + 1) * sizeof(cmpd3_t)); wdata[i].cmpd2[j].vl.len = j + 1; - for(k = 0; k < (j + 1); k++) { + for (k = 0; k < (j + 1); k++) { /* Initialize data of compound3 */ - ((cmpd3_t *)wdata[i].cmpd2[j].vl.p)[k].i3 = (int)j * 10 + diff; - ((cmpd3_t *)wdata[i].cmpd2[j].vl.p)[k].f3 = (float)j * 10.5F + (float)diff; + ((cmpd3_t *) wdata[i].cmpd2[j].vl.p)[k].i3 = (int) j * 10 + + diff; + ((cmpd3_t *) wdata[i].cmpd2[j].vl.p)[k].f3 = (float) j * 10.5F + + (float) diff; } /* end for */ } /* end for */ } /*----------------------------------------------------------------------- - * Create file(s) - *------------------------------------------------------------------------*/ + * Create file(s) + *------------------------------------------------------------------------*/ if (is_file_new == 1) fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); else - fid = H5Fopen (fname, H5F_ACC_RDWR, H5P_DEFAULT); + fid = H5Fopen(fname, H5F_ACC_RDWR, H5P_DEFAULT); /* Create dataspace for datasets */ sid_dset = H5Screate_simple(1, sdims_dset, NULL); /*------------------------------------- - * Create a sub compound3 datatype */ + * Create a sub compound3 datatype */ tid_cmpd3 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd3_t)); /* Insert integer field */ @@ -4651,9 +4390,8 @@ static void test_comps_array_vlen (const char * fname, const char *dset,const ch ret = H5Tinsert(tid_cmpd3, "float", HOFFSET(cmpd3_t, f3), H5T_NATIVE_FLOAT); assert(ret >= 0); - /*------------------------------------- - * Create a sub compound2 datatype */ + * Create a sub compound2 datatype */ tid_cmpd2 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd2_t)); /* Insert integer field */ @@ -4664,20 +4402,18 @@ static void test_comps_array_vlen (const char * fname, const char *dset,const ch ret = H5Tinsert(tid_cmpd2, "vlen", HOFFSET(cmpd2_t, vl), tid_cmpd2_vlen); assert(ret >= 0); - /*----------------------------------- - * Create a top compound1 datatype for dataset. - */ - tid_cmpd1 = H5Tcreate (H5T_COMPOUND, sizeof(cmpd1_t)); + * Create a top compound1 datatype for dataset. + */ + tid_cmpd1 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd1_t)); /* Create an array datatype */ tid_arry1 = H5Tarray_create2(tid_cmpd2, 1, sdims_arry); /* insert the array */ H5Tinsert(tid_cmpd1, "array_comp", HOFFSET(cmpd1_t, cmpd2), tid_arry1); - /* ---------------------- - * Create a dataset */ + * Create a dataset */ did_dset = H5Dcreate2(fid, dset, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* Write dataset to disk */ @@ -4685,8 +4421,8 @@ static void test_comps_array_vlen (const char * fname, const char *dset,const ch assert(ret >= 0); /*----------------------------------- - * Create an attribute in root group - */ + * Create an attribute in root group + */ tid_attr = H5Acreate2(fid, attr, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT); assert(tid_attr > 0); ret = H5Awrite(tid_attr, tid_cmpd1, wdata); @@ -4697,7 +4433,7 @@ static void test_comps_array_vlen (const char * fname, const char *dset,const ch assert(ret >= 0); /*------------------- - * Close IDs */ + * Close IDs */ ret = H5Aclose(tid_attr); assert(ret >= 0); ret = H5Tclose(tid_arry1); @@ -4718,8 +4454,7 @@ static void test_comps_array_vlen (const char * fname, const char *dset,const ch assert(ret >= 0); } - -static void test_comps_vlen_arry (const char * fname, const char *dset, const char *attr, int diff, int is_file_new) +static void test_comps_vlen_arry(const char * fname, const char *dset, const char *attr, int diff, int is_file_new) { /* sub compound 3 */ typedef struct { @@ -4736,53 +4471,53 @@ static void test_comps_vlen_arry (const char * fname, const char *dset, const ch /* top compound 1 */ typedef struct { int i1; - hvl_t vl; /* VL information for compound2 */ + hvl_t vl; /* VL information for compound2 */ } cmpd1_t; - cmpd1_t wdata[SDIM_DSET]; /* Dataset for compound1 */ + cmpd1_t wdata[SDIM_DSET]; /* Dataset for compound1 */ - hid_t fid; /* HDF5 File ID */ - hid_t did_dset; /* dataset ID */ - hid_t sid_dset; /* dataset space ID */ - hid_t tid_attr; - hid_t tid_cmpd3; /* compound3 type ID */ - hid_t tid_cmpd2; /* compound2 type ID */ - hid_t tid_cmpd2_arry; - hid_t tid_cmpd1; /* compound1 type ID */ - hid_t tid_cmpd1_vlen; - hsize_t sdims_dset[] = {SDIM_DSET}; - hsize_t sdims_cmpd_arry[] = {SDIM_CMPD_ARRAY}; + hid_t fid = -1; /* HDF5 File ID */ + hid_t did_dset = -1; /* dataset ID */ + hid_t sid_dset = -1; /* dataset space ID */ + hid_t tid_attr = -1; + hid_t tid_cmpd3 = -1; /* compound3 type ID */ + hid_t tid_cmpd2 = -1; /* compound2 type ID */ + hid_t tid_cmpd2_arry = -1; + hid_t tid_cmpd1 = -1; /* compound1 type ID */ + hid_t tid_cmpd1_vlen = -1; + hsize_t sdims_dset[] = { SDIM_DSET }; + hsize_t sdims_cmpd_arry[] = { SDIM_CMPD_ARRAY }; - unsigned i,j,k; /* counting variables */ - herr_t ret; /* Generic return value */ + unsigned i, j, k; /* counting variables */ + herr_t ret; /* Generic return value */ /* Allocate and initialize VL data to write */ - for(i = 0; i < SDIM_DSET; i++) { + for (i = 0; i < SDIM_DSET; i++) { /* compound 1 data */ - wdata[i].i1 = (int)i; + wdata[i].i1 = (int) i; wdata[i].vl.p = HDmalloc((i + 1) * sizeof(cmpd2_t)); wdata[i].vl.len = i + 1; - for(j = 0; j < (i + 1); j++) { + for (j = 0; j < (i + 1); j++) { /* compound2 data */ - ((cmpd2_t *)wdata[i].vl.p)[j].i2 = (int)i * 10 + diff; - for(k = 0; k < SDIM_CMPD_ARRAY; k++) { + ((cmpd2_t *) wdata[i].vl.p)[j].i2 = (int) i * 10 + diff; + for (k = 0; k < SDIM_CMPD_ARRAY; k++) { /* compound 3 data */ - ((cmpd2_t *)(wdata[i].vl.p))[j].cmpd3[k].i3 = (int)((float)k * 10.5F) + diff; - ((cmpd2_t *)(wdata[i].vl.p))[j].cmpd3[k].f3 = (float)k * 10.5F + (float)diff; + ((cmpd2_t *) (wdata[i].vl.p))[j].cmpd3[k].i3 = (int) ((float) k * 10.5F) + diff; + ((cmpd2_t *) (wdata[i].vl.p))[j].cmpd3[k].f3 = (float) k * 10.5F + (float) diff; } /* end for */ } /* end for */ } /* end for */ /*----------------------------------------------------------------------- - * Create file(s) - *------------------------------------------------------------------------*/ + * Create file(s) + *------------------------------------------------------------------------*/ if (is_file_new == 1) fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); else - fid = H5Fopen (fname, H5F_ACC_RDWR, H5P_DEFAULT); + fid = H5Fopen(fname, H5F_ACC_RDWR, H5P_DEFAULT); /* ----------------------------- - * Create sub compound3 type */ + * Create sub compound3 type */ tid_cmpd3 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd3_t)); /* Insert fields */ @@ -4792,7 +4527,7 @@ static void test_comps_vlen_arry (const char * fname, const char *dset, const ch assert(ret >= 0); /* ----------------------------- - * Create sub compound2 type */ + * Create sub compound2 type */ tid_cmpd2 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd2_t)); ret = H5Tinsert(tid_cmpd2, "int2", HOFFSET(cmpd2_t, i2), H5T_NATIVE_INT); @@ -4803,8 +4538,8 @@ static void test_comps_vlen_arry (const char * fname, const char *dset, const ch assert(ret >= 0); /* --------------------------- - * Create top compound1 type - */ + * Create top compound1 type + */ /* Create a VL datatype */ tid_cmpd1 = H5Tcreate(H5T_COMPOUND, sizeof(cmpd1_t)); /* Insert fields */ @@ -4815,21 +4550,22 @@ static void test_comps_vlen_arry (const char * fname, const char *dset, const ch assert(ret >= 0); /* ------------------------------- - * Create dataset with compound1 - */ + * Create dataset with compound1 + */ /* Create dataspace for dataset */ sid_dset = H5Screate_simple(1, sdims_dset, NULL); /* Create a dataset */ - did_dset = H5Dcreate2(fid, dset, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + did_dset = H5Dcreate2(fid, dset, tid_cmpd1, sid_dset, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); /* Write dataset to disk */ ret = H5Dwrite(did_dset, tid_cmpd1, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); assert(ret >= 0); /*----------------------------------- - * Create an attribute in root group - */ + * Create an attribute in root group + */ tid_attr = H5Acreate2(fid, attr, tid_cmpd1, sid_dset, H5P_DEFAULT, H5P_DEFAULT); assert(tid_attr > 0); ret = H5Awrite(tid_attr, tid_cmpd1, wdata); @@ -4840,7 +4576,7 @@ static void test_comps_vlen_arry (const char * fname, const char *dset, const ch assert(ret >= 0); /* ---------------- - * Close IDs */ + * Close IDs */ ret = H5Aclose(tid_attr); assert(ret >= 0); ret = H5Dclose(did_dset); @@ -4861,99 +4597,95 @@ static void test_comps_vlen_arry (const char * fname, const char *dset, const ch assert(ret >= 0); } - /*------------------------------------------------------------------------- -* Function: test_data_nocomparables -* -* Purpose: -* Create test files with non-comparable dataset and attributes with -* comparable datasets and attributes. All the comparables should display -* differences. -* -*-------------------------------------------------------------------------*/ + * Function: test_data_nocomparables + * + * Purpose: + * Create test files with non-comparable dataset and attributes with + * comparable datasets and attributes. All the comparables should display + * differences. + * + *-------------------------------------------------------------------------*/ #define DIM_ARRY 3 -static void test_data_nocomparables (const char * fname, int make_diffs) +static void test_data_nocomparables(const char * fname, int make_diffs) { - hid_t fid=0; - hid_t gid1=0; - hid_t gid2=0; - hid_t did1=0; - hid_t did2=0; - hid_t sid1=0; - hid_t tid_dset1=0; - hid_t tid_attr1=0; - hsize_t dims1_1[1] = {DIM_ARRY}; - hsize_t dims1_2[1] = {DIM_ARRY+1}; - hsize_t dims2[2] = {DIM_ARRY, 1}; - int data1[DIM_ARRY] = {0,0,0}; - int data2[DIM_ARRY] = {1,1,1}; - int data3[DIM_ARRY+1] = {1,1,1,1}; - int data1_dim2[DIM_ARRY][1] = {{0},{0},{0}}; + hid_t fid = -1; + hid_t gid1 = -1; + hid_t gid2 = -1; + hid_t did1 = -1; + hid_t did2 = -1; + hid_t sid1 = -1; + hid_t tid_dset1 = -1; + hid_t tid_attr1 = -1; + hsize_t dims1_1[1] = { DIM_ARRY }; + hsize_t dims1_2[1] = { DIM_ARRY + 1 }; + hsize_t dims2[2] = { DIM_ARRY, 1 }; + int data1[DIM_ARRY] = { 0, 0, 0 }; + int data2[DIM_ARRY] = { 1, 1, 1 }; + int data3[DIM_ARRY + 1] = { 1, 1, 1, 1 }; + int data1_dim2[DIM_ARRY][1] = { { 0 }, { 0 }, { 0 } }; int rank_attr; - char data1_str[DIM_ARRY][STR_SIZE]= {"ab","cd","ef"}; - herr_t status = SUCCEED; - void *dset_data_ptr1=NULL; - void *dset_data_ptr2=NULL; - void *dset_data_ptr3=NULL; - void *attr_data_ptr1=NULL; - void *attr_data_ptr2=NULL; - void *attr_data_ptr3=NULL; - void *attr_data_ptr4=NULL; - void *attr2_dim_ptr=NULL; - void *attr3_dim_ptr=NULL; + char data1_str[DIM_ARRY][STR_SIZE] = { "ab", "cd", "ef" }; + herr_t status = SUCCEED; + void *dset_data_ptr1 = NULL; + void *dset_data_ptr2 = NULL; + void *dset_data_ptr3 = NULL; + void *attr_data_ptr1 = NULL; + void *attr_data_ptr2 = NULL; + void *attr_data_ptr3 = NULL; + void *attr_data_ptr4 = NULL; + void *attr2_dim_ptr = NULL; + void *attr3_dim_ptr = NULL; /* init */ - tid_dset1=H5Tcopy(H5T_NATIVE_INT); - dset_data_ptr1=(int*)&data1; - dset_data_ptr2=(int*)&data1; - dset_data_ptr3=(int*)&data1; - tid_attr1=H5Tcopy(H5T_NATIVE_INT); - attr_data_ptr1=(int*)&data1; - attr_data_ptr3=(int*)&data1; - attr_data_ptr4=(int*)&data1; - attr2_dim_ptr=(hsize_t*)&dims1_1; - attr3_dim_ptr=(hsize_t*)&dims1_1; - rank_attr=1; - - if (make_diffs) - { + tid_dset1 = H5Tcopy(H5T_NATIVE_INT); + dset_data_ptr1 = (int*) &data1; + dset_data_ptr2 = (int*) &data1; + dset_data_ptr3 = (int*) &data1; + tid_attr1 = H5Tcopy(H5T_NATIVE_INT); + attr_data_ptr1 = (int*) &data1; + attr_data_ptr3 = (int*) &data1; + attr_data_ptr4 = (int*) &data1; + attr2_dim_ptr = (hsize_t*) &dims1_1; + attr3_dim_ptr = (hsize_t*) &dims1_1; + rank_attr = 1; + + if (make_diffs) { /* ------------ - * group1 */ - tid_dset1=H5Tcopy(H5T_C_S1); - H5Tset_size(tid_dset1, (size_t)STR_SIZE); - dset_data_ptr1=(char*)&data1_str; - dset_data_ptr2=(int*)&data2; - attr_data_ptr1=(int*)&data2; + * group1 */ + tid_dset1 = H5Tcopy(H5T_C_S1); + H5Tset_size(tid_dset1, (size_t) STR_SIZE); + dset_data_ptr1 = (char*) &data1_str; + dset_data_ptr2 = (int*) &data2; + attr_data_ptr1 = (int*) &data2; /* ----------- - * group2 - */ - dset_data_ptr3=(int*)&data2; + * group2 + */ + dset_data_ptr3 = (int*) &data2; /* dset1/attr1 */ - tid_attr1=H5Tcopy(H5T_C_S1); - H5Tset_size(tid_attr1, (size_t)STR_SIZE); - attr_data_ptr2=(char*)&data1_str; + tid_attr1 = H5Tcopy(H5T_C_S1); + H5Tset_size(tid_attr1, (size_t) STR_SIZE); + attr_data_ptr2 = (char*) &data1_str; /* dset1/attr2 */ - attr2_dim_ptr=(hsize_t*)&dims1_2; + attr2_dim_ptr = (hsize_t*) &dims1_2; /* dset1/attr3 */ - attr_data_ptr3=(int*)&data1_dim2; - attr3_dim_ptr=(hsize_t*)&dims2; - rank_attr=2; + attr_data_ptr3 = (int*) &data1_dim2; + attr3_dim_ptr = (hsize_t*) &dims2; + rank_attr = 2; /* dset1/attr4 */ - attr_data_ptr4=(int*)&data2; + attr_data_ptr4 = (int*) &data2; } - - /*----------------------------------------------------------------------- + /*----------------------------------------------------------------------- * Create file(s) *------------------------------------------------------------------------*/ - fid = H5Fcreate (fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid < 0) - { + fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid < 0) { fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname); status = FAIL; goto out; @@ -4963,16 +4695,14 @@ static void test_data_nocomparables (const char * fname, int make_diffs) * Groups *------------------------------------------------------------------------*/ gid1 = H5Gcreate2(fid, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1 < 0) - { + if (gid1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname); status = FAIL; goto out; } gid2 = H5Gcreate2(fid, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid2 < 0) - { + if (gid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname); status = FAIL; goto out; @@ -4981,29 +4711,26 @@ static void test_data_nocomparables (const char * fname, int make_diffs) /*----------------------------------------------------------------------- * Datasets in /g1 *------------------------------------------------------------------------*/ - if((sid1 = H5Screate_simple(1, dims1_1, NULL)) < 0) - goto out; + if ((sid1 = H5Screate_simple(1, dims1_1, NULL)) < 0) + goto out; /* dset1 */ - if((did1 = H5Dcreate2(gid1, "dset1", tid_dset1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - { + if ((did1 = H5Dcreate2(gid1, "dset1", tid_dset1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) { fprintf(stderr, "Error: %s> H5Dcreate2 failed.\n", "dset1"); status = FAIL; goto out; } - if(H5Dwrite(did1, tid_dset1, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data_ptr1) < 0) - { + if (H5Dwrite(did1, tid_dset1, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data_ptr1) < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", "dset1"); status = FAIL; goto out; } - write_attr(did1,1,dims1_1,"attr", H5T_NATIVE_INT, attr_data_ptr1); + write_attr(did1, 1, dims1_1, "attr", H5T_NATIVE_INT, attr_data_ptr1); /* dset2 */ - status = write_dset(gid1, 1, dims1_1,"dset2", H5T_NATIVE_INT, dset_data_ptr2); - if (status == FAIL) - { + status = write_dset(gid1, 1, dims1_1, "dset2", H5T_NATIVE_INT, dset_data_ptr2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname); goto out; } @@ -5012,108 +4739,100 @@ static void test_data_nocomparables (const char * fname, int make_diffs) * Datasets in /g2 *------------------------------------------------------------------------*/ /* --------- - * dset1 */ - if((did2 = H5Dcreate2(gid2, "dset1", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - { + * dset1 */ + if ((did2 = H5Dcreate2(gid2, "dset1", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) { fprintf(stderr, "Error: %s> H5Dcreate2 failed.\n", "dset1"); status = FAIL; goto out; } - if(H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data_ptr3) < 0) - { + if (H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data_ptr3) < 0) { fprintf(stderr, "Error: %s> H5Dwrite failed.\n", "dset1"); status = FAIL; goto out; } /* attr1 - non-compatible : different type */ - write_attr(did2,1,dims1_1,"attr1", tid_attr1, attr_data_ptr2); - + write_attr(did2, 1, dims1_1, "attr1", tid_attr1, attr_data_ptr2); /* attr2 - non-compatible : same rank, different dimention */ - write_attr(did2,1, attr2_dim_ptr,"attr2", H5T_NATIVE_INT, data3); + write_attr(did2, 1, (hsize_t *) attr2_dim_ptr, "attr2", H5T_NATIVE_INT, data3); /* attr3 - non-compatible : different rank */ - write_attr(did2, rank_attr,attr3_dim_ptr,"attr3", H5T_NATIVE_INT, attr_data_ptr3); + write_attr(did2, rank_attr, (hsize_t *) attr3_dim_ptr, "attr3", H5T_NATIVE_INT, attr_data_ptr3); /* attr4 - compatible : different data values */ - write_attr(did2,1,dims1_1,"attr4", H5T_NATIVE_INT, attr_data_ptr4); + write_attr(did2, 1, dims1_1, "attr4", H5T_NATIVE_INT, attr_data_ptr4); /*---------- - * dset2 */ - status = write_dset(gid2, 1, dims1_1,"dset2", H5T_NATIVE_INT, dset_data_ptr3); - if (status == FAIL) - { + * dset2 */ + status = write_dset(gid2, 1, dims1_1, "dset2", H5T_NATIVE_INT, dset_data_ptr3); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname); goto out; } - - out: /*----------------------------------------------------------------------- * Close IDs *-----------------------------------------------------------------------*/ - if(fid) + if (fid) H5Fclose(fid); - if(gid1) + if (gid1) H5Gclose(gid1); - if(gid2) + if (gid2) H5Gclose(gid2); - if(did1) + if (did1) H5Dclose(did1); - if(did2) + if (did2) H5Dclose(did2); - if(sid1) + if (sid1) H5Sclose(sid1); - if(tid_dset1) + if (tid_dset1) H5Tclose(tid_dset1); - if(tid_attr1) + if (tid_attr1) H5Tclose(tid_attr1); } /*------------------------------------------------------------------------- -* Function: test_objs_nocomparables -* -* Purpose: -* Create test files with common objects (same name) but different object -* types. -* h5diff should show non-comparable output from these common objects. -*-------------------------------------------------------------------------*/ + * Function: test_objs_nocomparables + * + * Purpose: + * Create test files with common objects (same name) but different object + * types. + * h5diff should show non-comparable output from these common objects. + *-------------------------------------------------------------------------*/ static void test_objs_nocomparables(const char *fname1, const char *fname2) { - herr_t status = SUCCEED; - hid_t fid1=0; - hid_t fid2=0; - hid_t topgid1=0; - hid_t topgid2=0; - hid_t gid1=0; - hid_t did1=0; - hid_t tid1=0; - hid_t gid2=0; - hid_t did2=0; - hid_t tid2=0; - hsize_t dims[1] = {DIM_ARRY}; - int data1[DIM_ARRY] = {1,1,1}; - int data2[DIM_ARRY] = {2,2,2}; - - /*----------------------------------------------------------------------- + herr_t status = SUCCEED; + hid_t fid1 = -1; + hid_t fid2 = -1; + hid_t topgid1 = -1; + hid_t topgid2 = -1; + hid_t gid1 = -1; + hid_t did1 = -1; + hid_t tid1 = -1; + hid_t gid2 = -1; + hid_t did2 = -1; + hid_t tid2 = -1; + hsize_t dims[1] = { DIM_ARRY }; + int data1[DIM_ARRY] = { 1, 1, 1 }; + int data2[DIM_ARRY] = { 2, 2, 2 }; + + /*----------------------------------------------------------------------- * Open file(s) to add objects *------------------------------------------------------------------------*/ /* file1 */ - fid1 = H5Fopen (fname1, H5F_ACC_RDWR, H5P_DEFAULT); - if (fid1 < 0) - { + fid1 = H5Fopen(fname1, H5F_ACC_RDWR, H5P_DEFAULT); + if (fid1 < 0) { fprintf(stderr, "Error: %s> H5Fopen failed.\n", fname1); status = FAIL; goto out; } /* file2 */ - fid2 = H5Fopen (fname2, H5F_ACC_RDWR, H5P_DEFAULT); - if (fid2 < 0) - { + fid2 = H5Fopen(fname2, H5F_ACC_RDWR, H5P_DEFAULT); + if (fid2 < 0) { fprintf(stderr, "Error: %s> H5Fopen failed.\n", fname2); status = FAIL; goto out; @@ -5124,25 +4843,22 @@ static void test_objs_nocomparables(const char *fname1, const char *fname2) *------------------------------------------------------------------------*/ /* parent group */ topgid1 = H5Gcreate2(fid1, "diffobjtypes", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (topgid1 < 0) - { + if (topgid1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; } /* dataset */ - status = write_dset(topgid1, 1, dims,"obj1", H5T_NATIVE_INT, data1); - if (status == FAIL) - { + status = write_dset(topgid1, 1, dims, "obj1", H5T_NATIVE_INT, data1); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname1); goto out; } /* group */ gid1 = H5Gcreate2(topgid1, "obj2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid1 < 0) - { + if (gid1 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); status = FAIL; goto out; @@ -5151,8 +4867,7 @@ static void test_objs_nocomparables(const char *fname1, const char *fname2) /* committed type */ tid1 = H5Tcopy(H5T_NATIVE_INT); status = H5Tcommit2(topgid1, "obj3", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", fname1); goto out; } @@ -5162,8 +4877,7 @@ static void test_objs_nocomparables(const char *fname1, const char *fname2) *------------------------------------------------------------------------*/ /* parent group */ topgid2 = H5Gcreate2(fid2, "diffobjtypes", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (topgid2 < 0) - { + if (topgid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; @@ -5171,8 +4885,7 @@ static void test_objs_nocomparables(const char *fname1, const char *fname2) /* group */ gid2 = H5Gcreate2(topgid2, "obj1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid2 < 0) - { + if (gid2 < 0) { fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); status = FAIL; goto out; @@ -5181,16 +4894,14 @@ static void test_objs_nocomparables(const char *fname1, const char *fname2) /* committed type */ tid2 = H5Tcopy(H5T_NATIVE_INT); status = H5Tcommit2(topgid2, "obj2", tid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { + if (status < 0) { fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", fname2); goto out; } /* dataset */ - status = write_dset(topgid2, 1, dims,"obj3", H5T_NATIVE_INT, data2); - if (status == FAIL) - { + status = write_dset(topgid2, 1, dims, "obj3", H5T_NATIVE_INT, data2); + if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname2); goto out; } @@ -5199,116 +4910,109 @@ out: /*----------------------------------------------------------------------- * Close IDs *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(fid2) + if (fid2) H5Fclose(fid2); - if(topgid1) + if (topgid1) H5Gclose(topgid1); - if(topgid2) + if (topgid2) H5Gclose(topgid2); - if(did1) + if (did1) H5Dclose(did1); - if(did2) + if (did2) H5Dclose(did2); - if(gid1) + if (gid1) H5Gclose(gid1); - if(gid2) + if (gid2) H5Gclose(gid2); - if(tid1) + if (tid1) H5Tclose(tid1); - if(tid2) + if (tid2) H5Tclose(tid2); } -static hid_t mkstr(int size, H5T_str_t pad) { +static hid_t mkstr(int size, H5T_str_t pad) +{ hid_t type; - if((type=H5Tcopy(H5T_C_S1)) < 0) return -1; - if(H5Tset_size(type, (size_t)size) < 0) return -1; - if(H5Tset_strpad(type, pad) < 0) return -1; + if ((type = H5Tcopy(H5T_C_S1)) < 0) + return -1; + if (H5Tset_size(type, (size_t) size) < 0) + return -1; + if (H5Tset_strpad(type, pad) < 0) + return -1; return type; } /*------------------------------------------------------------------------- -* Function: test_objs_strings -* -* Purpose: -* Create test files with common objects (same name) but different string -* types. -* h5diff should show differences output from these common objects. -*-------------------------------------------------------------------------*/ + * Function: test_objs_strings + * + * Purpose: + * Create test files with common objects (same name) but different string + * types. + * h5diff should show differences output from these common objects. + *-------------------------------------------------------------------------*/ static void test_objs_strings(const char *fname1, const char *fname2) { - herr_t status = SUCCEED; - hid_t fid1=0; - hid_t fid2=0; - hid_t dataset=0; - hid_t space=0; - hid_t f_type=0; - hid_t m_type=0; - hsize_t dims1[] = {3, 4}; - char string1A[12][3] = {"s1","s2","s3","s4","s5","s6","s","s","s9", - "s0","s1","s2"}; - char string1B[12][3] = {"s1","s2","s3","s4","s","s","s7","s8","s9", - "s0","s1","s2"}; - - hsize_t dims2[]={20}; - char string2A[20][10] = {"ab cd ef1", "ab cd ef2", "ab cd ef3", "ab cd ef4", - "ab cd ef5", "ab cd ef6", "ab cd ef7", "ab cd ef8", - "ab cd 9", "ab cd 0", "ab cd 1", "ab cd 2", - "ab cd ef3", "ab cd ef4", "ab cd ef5", "ab cd ef6", - "ab cd ef7", "ab cd ef8", "ab cd ef9", "ab cd ef0"}; - char string2B[20][10] = {"ab cd ef1", "ab cd ef2", "ab cd ef3", "ab cd ef4", - "ab cd ef5", "ab cd ef6", "ab cd ef7", "ab cd ef8", - "ab cd ef9", "ab cd ef0", "ab cd ef1", "ab cd ef2", - "ab cd 3", "ab cd 4", "ab cd 5", "ab cd 6", - "ab cd ef7", "ab cd ef8", "ab cd ef9", "ab cd ef0"}; - - hsize_t dims3[] = {27}; - char string3A[27][6] = {"abcd0", "abcd1", "abcd2", "abcd3", - "abcd4", "abcd5", "abcd6", "abcd7", - "abcd8", "abcd9", "abcd0", "abcd1", - "abd2", "abc3", "bcd4", "acd5", - "abcd6", "abcd7", "abcd8", "abcd9", - "abcd0", "abcd1", "abcd2", "abcd3", - "abc4", "abc5", "abc6"}; - char string3B[27][6] = {"abcd0", "abcd1", "abcd2", "abcd3", - "abcd4", "abcd5", "abcd6", "abcd7", - "abcd8", "abcd9", "abcd0", "abcd1", - "abcd2", "abcd3", "abcd4", "abcd5", - "abd6", "abc7", "bcd8", "acd9", - "abcd0", "abcd1", "abcd2", "abcd3", - "abd4", "abd5", "abd6"}; - - hsize_t dims4[] = {3}; + hid_t fid1 = -1; + hid_t fid2 = -1; + hid_t dataset = -1; + hid_t space = -1; + hid_t f_type = -1; + hid_t m_type = -1; + hsize_t dims1[] = { 3, 4 }; + char string1A[12][3] = { "s1", "s2", "s3", "s4", "s5", "s6", "s", "s", "s9", + "s0", "s1", "s2" }; + char string1B[12][3] = { "s1", "s2", "s3", "s4", "s", "s", "s7", "s8", "s9", + "s0", "s1", "s2" }; + + hsize_t dims2[] = { 20 }; + char string2A[20][10] = { "ab cd ef1", "ab cd ef2", "ab cd ef3", + "ab cd ef4", "ab cd ef5", "ab cd ef6", "ab cd ef7", "ab cd ef8", + "ab cd 9", "ab cd 0", "ab cd 1", "ab cd 2", "ab cd ef3", + "ab cd ef4", "ab cd ef5", "ab cd ef6", "ab cd ef7", "ab cd ef8", + "ab cd ef9", "ab cd ef0" }; + char string2B[20][10] = { "ab cd ef1", "ab cd ef2", "ab cd ef3", + "ab cd ef4", "ab cd ef5", "ab cd ef6", "ab cd ef7", "ab cd ef8", + "ab cd ef9", "ab cd ef0", "ab cd ef1", "ab cd ef2", "ab cd 3", + "ab cd 4", "ab cd 5", "ab cd 6", "ab cd ef7", "ab cd ef8", + "ab cd ef9", "ab cd ef0" }; + + hsize_t dims3[] = { 27 }; + char string3A[27][6] = { "abcd0", "abcd1", "abcd2", "abcd3", "abcd4", + "abcd5", "abcd6", "abcd7", "abcd8", "abcd9", "abcd0", "abcd1", + "abd2", "abc3", "bcd4", "acd5", "abcd6", "abcd7", "abcd8", "abcd9", + "abcd0", "abcd1", "abcd2", "abcd3", "abc4", "abc5", "abc6" }; + char string3B[27][6] = { "abcd0", "abcd1", "abcd2", "abcd3", "abcd4", + "abcd5", "abcd6", "abcd7", "abcd8", "abcd9", "abcd0", "abcd1", + "abcd2", "abcd3", "abcd4", "abcd5", "abd6", "abc7", "bcd8", "acd9", + "abcd0", "abcd1", "abcd2", "abcd3", "abd4", "abd5", "abd6" }; + + hsize_t dims4[] = { 3 }; char string4A[3][21] = { "s1234567890123456789", "s1234567890123456789", - "s12345678901234567"}; + "s12345678901234567" }; char string4B[3][21] = { "s1234567890123456789", "s12345678901234567", - "s1234567890123456789"}; + "s1234567890123456789" }; /*----------------------------------------------------------------------- - * Create file(s) - *------------------------------------------------------------------------*/ - /* file1 */ - fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { - fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); - status = FAIL; - goto out; - } - - /* file2 */ - fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid2 < 0) - { - fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); - status = FAIL; - goto out; - } + * Create file(s) + *------------------------------------------------------------------------*/ + /* file1 */ + fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) { + fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); + goto out; + } + + /* file2 */ + fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) { + fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); + goto out; + } /* string 1 : nullterm string */ space = H5Screate_simple(2, dims1, NULL); @@ -5398,88 +5102,82 @@ out: /*----------------------------------------------------------------------- * Close IDs *-----------------------------------------------------------------------*/ - if(fid1) + if (fid1) H5Fclose(fid1); - if(fid2) + if (fid2) H5Fclose(fid2); } /*------------------------------------------------------------------------- -* Function: write_attr_in -* -* Purpose: write attributes in LOC_ID (dataset, group, named datatype) -* -*------------------------------------------------------------------------- -*/ + * Function: write_attr_strings + * + * Purpose: write attributes in LOC_ID (dataset, group, named datatype) + * swap VL strings + * + *------------------------------------------------------------------------- + */ static -void write_attr_in(hid_t loc_id, - const char* dset_name, /* for saving reference to dataset*/ - hid_t fid, - int make_diffs /* flag to modify data buffers */) +void write_attr_strings(hid_t loc_id, const char* dset_name, hid_t fid, int make_diffs /* flag to modify data buffers */) { /* Compound datatype */ - typedef struct s_t - { - char a; + typedef struct s_t { + char a; double b; } s_t; - typedef enum - { - RED, - GREEN + typedef enum { + RED, GREEN } e_t; - hid_t aid; - hid_t sid; - hid_t tid; - herr_t status; - int val, i, j, k, l, n; - float f; + hid_t aid = -1; + hid_t sid = -1; + hid_t tid = -1; + herr_t status; + int val, i, j, k, l, n; + float f; /* create 1D attributes with dimension [2], 2 elements */ - hsize_t dims[1]={2}; - char buf1[2][STR_SIZE]= {"ab","de"}; /* string */ - char *buf1a[2]; /* VL string */ - char buf2[2]= {1,2}; /* bitfield, opaque */ - s_t buf3[2]= {{1,2.0F},{3,4.0F}}; /* compound */ - hobj_ref_t buf4[2]; /* reference */ - e_t buf45[2]= {RED,RED}; /* enum */ - hvl_t buf5[2]; /* vlen */ - hsize_t dimarray[1]={3}; /* array dimension */ - int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ - int buf7[2]= {1,2}; /* integer */ - float buf8[2]= {1.0F, 2.0F}; /* float */ + hsize_t dims[1] = { 2 }; + char buf1[2][STR_SIZE] = { "ab", "de" }; /* string */ + char *buf1a[2]; /* VL string */ + char buf2[2] = { 1, 2 }; /* bitfield, opaque */ + s_t buf3[2] = { { 1, 2.0F }, { 3, 4.0F } }; /* compound */ + hobj_ref_t buf4[2]; /* reference */ + e_t buf45[2] = { RED, RED }; /* enum */ + hvl_t buf5[2]; /* vlen */ + hsize_t dimarray[1] = { 3 }; /* array dimension */ + int buf6[2][3] = { { 1, 2, 3 }, { 4, 5, 6 } }; /* array */ + int buf7[2] = { 1, 2 }; /* integer */ + float buf8[2] = { 1.0F, 2.0F }; /* float */ /* create 2D attributes with dimension [3][2], 6 elements */ - hsize_t dims2[2]={3,2}; - char buf12[3][2][STR_SIZE]= {{"ab","cd"},{"ef","gh"},{"ij","kl"}}; /* string */ - char *buf12a[3][2]; /* VL string */ - char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ - s_t buf32[6]= {{1,2.0F},{3,4.0F},{5,6.0F},{7,8.0F},{9,10.0F},{11,12.0F}}; /* compound */ - hobj_ref_t buf42[3][2]; /* reference */ - e_t buf452[3][2]; /* enum */ - hvl_t buf52[3][2]; /* vlen */ - int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ - int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ - float buf82[3][2]= {{1.0F,2.0F},{3.0F,4.0F},{5.0F,6.0F}}; /* float */ + hsize_t dims2[2] = { 3, 2 }; + char buf12[3][2][STR_SIZE] = { { "ab", "cd" }, { "ef", "gh" }, { "ij", "kl" } }; /* string */ + char *buf12a[3][2]; /* VL string */ + char buf22[3][2] = { { 1, 2 }, { 3, 4 }, { 5, 6 } }; /* bitfield, opaque */ + s_t buf32[6] = { { 1, 2.0F }, { 3, 4.0F }, { 5, 6.0F }, { 7, 8.0F }, { 9, 10.0F }, { 11, 12.0F } }; /* compound */ + hobj_ref_t buf42[3][2]; /* reference */ + e_t buf452[3][2]; /* enum */ + hvl_t buf52[3][2]; /* vlen */ + int buf62[6][3] = { { 1, 2, 3 }, { 4, 5, 6 }, { 7, 8, 9 }, { 10, 11, 12 }, { 13, 14, 15 }, { 16, 17, 18 } }; /* array */ + int buf72[3][2] = { { 1, 2 }, { 3, 4 }, { 5, 6 } }; /* integer */ + float buf82[3][2] = { { 1.0F, 2.0F }, { 3.0F, 4.0F }, { 5.0F, 6.0F } }; /* float */ /* create 3D attributes with dimension [4][3][2], 24 elements */ - hsize_t dims3[3]={4,3,2}; - char buf13[4][3][2][STR_SIZE]= {{{"ab","cd"},{"ef","gh"},{"ij","kl"}}, - {{"mn","pq"},{"rs","tu"},{"vw","xz"}}, - {{"AB","CD"},{"EF","GH"},{"IJ","KL"}}, - {{"MN","PQ"},{"RS","TU"},{"VW","XZ"}}}; /* string */ - char *buf13a[4][3][2]; /* VL string */ - char buf23[4][3][2]; /* bitfield, opaque */ - s_t buf33[4][3][2]; /* compound */ - hobj_ref_t buf43[4][3][2]; /* reference */ - e_t buf453[4][3][2]; /* enum */ - hvl_t buf53[4][3][2]; /* vlen */ - int buf63[24][3]; /* array */ - int buf73[4][3][2]; /* integer */ - float buf83[4][3][2]; /* float */ - + hsize_t dims3[3] = { 4, 3, 2 }; + char buf13[4][3][2][STR_SIZE] = { { { "ab", "cd" }, { "ef", "gh" }, { "ij", "kl" } }, + { { "mn", "pq" }, { "rs", "tu" }, { "vw", "xz" } }, + { { "AB", "CD" }, { "EF", "GH" }, { "IJ", "KL" } }, + { { "MN", "PQ" }, { "RS", "TU" }, { "VW", "XZ" } } }; /* string */ + char *buf13a[4][3][2]; /* VL string */ + char buf23[4][3][2]; /* bitfield, opaque */ + s_t buf33[4][3][2]; /* compound */ + hobj_ref_t buf43[4][3][2]; /* reference */ + e_t buf453[4][3][2]; /* enum */ + hvl_t buf53[4][3][2]; /* vlen */ + int buf63[24][3]; /* array */ + int buf73[4][3][2]; /* integer */ + float buf83[4][3][2]; /* float */ /*------------------------------------------------------------------------- * 1D attributes @@ -5492,15 +5190,10 @@ void write_attr_in(hid_t loc_id, */ if (make_diffs) - { - for (i=0; i<2; i++) - { - for (j=0; j<2; j++) - { - buf1[i][j]='z'; - } - } - } + for (i = 0; i < 2; i++) + for (j = 0; j < 2; j++) + buf1[i][j] = 'z'; + /* buf1[2][2]= {"ab","de"}; $h5diff file7.h5 file6.h5 g1 g1 -v @@ -5513,16 +5206,17 @@ void write_attr_in(hid_t loc_id, [ 1 ] d z [ 1 ] e z */ + for (i = 0; i < 2; i++) + buf1a[i] = buf1[i]; + tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid, (size_t)STR_SIZE); - write_attr(loc_id,1,dims,"string",tid,buf1); + status = H5Tset_size(tid, H5T_VARIABLE); + write_attr(loc_id, 1, dims, "string", tid, buf1a); status = H5Tclose(tid); - for (i=0; i<2; i++) - buf1a[i]=buf1[i]; tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid, H5T_VARIABLE); - write_attr(loc_id,1,dims,"VLstring",tid,buf1a); + status = H5Tset_size(tid, (size_t)STR_SIZE); + write_attr(loc_id, 1, dims, "VLstring", tid, buf1); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -5531,10 +5225,8 @@ void write_attr_in(hid_t loc_id, */ if (make_diffs) - { - for (i=0; i<2; i++) - buf2[i]=buf2[1]=0; - } + for (i = 0; i < 2; i++) + buf2[i] = buf2[1] = 0; /* buf2[2]= {1,2}; $h5diff file7.h5 file6.h5 g1 g1 -v @@ -5548,7 +5240,7 @@ void write_attr_in(hid_t loc_id, */ tid = H5Tcopy(H5T_STD_B8LE); - write_attr(loc_id,1,dims,"bitfield",tid,buf2); + write_attr(loc_id, 1, dims, "bitfield", tid, buf2); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -5568,9 +5260,9 @@ void write_attr_in(hid_t loc_id, [ 1 ] 2 0 2 */ - tid = H5Tcreate(H5T_OPAQUE, (size_t)1); + tid = H5Tcreate(H5T_OPAQUE, (size_t) 1); status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ - write_attr(loc_id,1,dims,"opaque",tid,buf2); + write_attr(loc_id, 1, dims, "opaque", tid, buf2); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -5579,12 +5271,10 @@ void write_attr_in(hid_t loc_id, */ if (make_diffs) - { - for (i=0; i<2; i++) - { - buf3[i].a=0; buf3[i].b=0; + for (i = 0; i < 2; i++) { + buf3[i].a = 0; + buf3[i].b = 0; } - } /* buf3[2]= {{1,2},{3,4}}; @@ -5599,10 +5289,10 @@ void write_attr_in(hid_t loc_id, [ 1 ] 4 5 1 */ - tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_attr(loc_id,1,dims,"compound",tid,buf3); + write_attr(loc_id, 1, dims, "compound", tid, buf3); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -5610,38 +5300,1021 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ /* Create references to dataset */ - if (dset_name) - { - status=H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,(hid_t)-1); - status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,(hid_t)-1); - write_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4); + if (dset_name) { + status = H5Rcreate(&buf4[0], fid, dset_name, H5R_OBJECT, (hid_t) -1); + status = H5Rcreate(&buf4[1], fid, dset_name, H5R_OBJECT, (hid_t) -1); + write_attr(loc_id, 1, dims, "reference", H5T_STD_REF_OBJ, buf4); } /*------------------------------------------------------------------------- - * H5T_ENUM + * H5T_ENUM + *------------------------------------------------------------------------- + */ + if (make_diffs) + for (i = 0; i < 2; i++) + buf45[i] = GREEN; + /* + buf45[2]= {RED,RED}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <enum> and <enum> + position enum of </g1> enum of </g1> difference + ------------------------------------------------------------ + [ 0 ] RED GREEN + [ 1 ] RED GREEN + */ + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "GREEN", (val = 1, &val)); + write_attr(loc_id, 1, dims, "enum", tid, buf45); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + + buf5[0].len = 1; + buf5[0].p = HDmalloc(1 * sizeof(int)); + ((int *) buf5[0].p)[0] = 1; + buf5[1].len = 2; + buf5[1].p = HDmalloc(2 * sizeof(int)); + ((int *) buf5[1].p)[0] = 2; + ((int *) buf5[1].p)[1] = 3; + + if (make_diffs) { + ((int *) buf5[0].p)[0] = 0; + ((int *) buf5[1].p)[0] = 0; + ((int *) buf5[1].p)[1] = 0; + } + /* + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + position vlen of </g1> vlen of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + [ 1 ] 3 0 3 + */ + + sid = H5Screate_simple(1, dims, NULL); + tid = H5Tvlen_create(H5T_NATIVE_INT); + aid = H5Acreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite(aid, tid, buf5); + assert(status >= 0); + status = H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5); + assert(status >= 0); + status = H5Aclose(aid); + status = H5Tclose(tid); + status = H5Sclose(sid); + + /*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + if (make_diffs) + for (i = 0; i < 2; i++) + for (j = 0; j < 3; j++) + buf6[i][j] = 0; + /* + buf6[2][3]= {{1,2,3},{4,5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <array> and <array> + position array of </g1> array of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 0 ] 2 0 2 + [ 0 ] 3 0 3 + [ 1 ] 4 0 4 + [ 1 ] 5 0 5 + [ 1 ] 6 0 6 + */ + tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); + write_attr(loc_id, 1, dims, "array", tid, buf6); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + + if (make_diffs) + for (i = 0; i < 2; i++) { + buf7[i] = 0; + buf8[i] = 0; + } + /* + buf7[2]= {1,2}; + buf8[2]= {1,2}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + position integer of </g1> integer of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + position float of </g1> float of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + */ + write_attr(loc_id, 1, dims, "integer", H5T_NATIVE_INT, buf7); + write_attr(loc_id, 1, dims, "float", H5T_NATIVE_FLOAT, buf8); + + /*------------------------------------------------------------------------- + * 2D attributes + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + if (make_diffs) + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) + for (k = 0; k < 2; k++) + buf12[i][j][k] = 'z'; + + /* + buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <string2D> and <string2D> + position string2D of </g1> string2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] a z + [ 0 0 ] b z + [ 0 1 ] c z + [ 0 1 ] d z + [ 1 0 ] e z + [ 1 0 ] f z + [ 1 1 ] g z + [ 1 1 ] h z + [ 2 0 ] i z + [ 2 0 ] j z + [ 2 1 ] k z + [ 2 1 ] l z + */ + + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) + buf12a[i][j] = buf12[i][j]; + + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid, H5T_VARIABLE); + write_attr(loc_id, 2, dims2, "string2D", tid, buf12a); + status = H5Tclose(tid); + + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid, (size_t) STR_SIZE); + write_attr(loc_id, 2, dims2, "VLstring2D", tid, buf12); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + if (make_diffs) + memset(buf22, 0, sizeof buf22); + /* + buf22[3][2]= {{1,2},{3,4},{5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <bitfield2D> and <bitfield2D> + position bitfield2D of </g1> bitfield2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + + tid = H5Tcopy(H5T_STD_B8LE); + write_attr(loc_id, 2, dims2, "bitfield2D", tid, buf22); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + + /* + buf22[3][2]= {{1,2},{3,4},{5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <opaque2D> and <opaque2D> + position opaque2D of </g1> opaque2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + tid = H5Tcreate(H5T_OPAQUE, (size_t) 1); + status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ + write_attr(loc_id, 2, dims2, "opaque2D", tid, buf22); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + if (make_diffs) + memset(buf32, 0, sizeof buf32); + + /* + buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <opaque2D> and <opaque2D> + position opaque2D of </g1> opaque2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + + tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t)); + H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); + H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); + write_attr(loc_id, 2, dims2, "compound2D", tid, buf32); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_REFERENCE (H5R_OBJECT object reference) + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) { + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) + status = H5Rcreate(&buf42[i][j], fid, dset_name, H5R_OBJECT, + (hid_t) -1); + write_attr(loc_id, 2, dims2, "reference2D", H5T_STD_REF_OBJ, buf42); + } + + /*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) + if (make_diffs) + buf452[i][j] = GREEN; + else + buf452[i][j] = RED; + + /* + Attribute: <enum2D> and <enum2D> + position enum2D of </g1> enum2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] RED GREEN + [ 0 1 ] RED GREEN + [ 1 0 ] RED GREEN + [ 1 1 ] RED GREEN + [ 2 0 ] RED GREEN + [ 2 1 ] RED GREEN + */ + + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "GREEN", (val = 1, &val)); + write_attr(loc_id, 2, dims2, "enum2D", tid, buf452); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + n = 0; + for (i = 0; i < 3; i++) { + for (j = 0; j < 2; j++) { + buf52[i][j].p = HDmalloc((size_t)(i + 1) * sizeof(int)); + buf52[i][j].len = (size_t)(i + 1); + for (l = 0; l < i + 1; l++) + if (make_diffs) + ((int *) buf52[i][j].p)[l] = 0; + else + ((int *) buf52[i][j].p)[l] = n++; + } + } + + /* + position vlen2D of </g1> vlen2D of </g1> difference + ------------------------------------------------------------ + [ 0 1 ] 1 0 1 + [ 1 0 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 1 1 ] 5 0 5 + [ 2 0 ] 6 0 6 + [ 2 0 ] 7 0 7 + [ 2 0 ] 8 0 8 + [ 2 1 ] 9 0 9 + [ 2 1 ] 10 0 10 + [ 2 1 ] 11 0 11 + */ + + sid = H5Screate_simple(2, dims2, NULL); + tid = H5Tvlen_create(H5T_NATIVE_INT); + aid = H5Acreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite(aid, tid, buf52); + assert(status >= 0); + status = H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52); + assert(status >= 0); + status = H5Aclose(aid); + status = H5Tclose(tid); + status = H5Sclose(sid); + + /*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + if (make_diffs) + memset(buf62, 0, sizeof buf62); + /* + buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <array2D> and <array2D> + position array2D of </g1> array2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 0 ] 2 0 2 + [ 0 0 ] 3 0 3 + [ 0 1 ] 4 0 4 + [ 0 1 ] 5 0 5 + [ 0 1 ] 6 0 6 + [ 1 0 ] 7 0 7 + [ 1 0 ] 8 0 8 + [ 1 0 ] 9 0 9 + [ 1 1 ] 10 0 10 + [ 1 1 ] 11 0 11 + [ 1 1 ] 12 0 12 + [ 2 0 ] 13 0 13 + [ 2 0 ] 14 0 14 + [ 2 0 ] 15 0 15 + [ 2 1 ] 16 0 16 + [ 2 1 ] 17 0 17 + [ 2 1 ] 18 0 18 + */ + tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); + write_attr(loc_id, 2, dims2, "array2D", tid, buf62); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + + if (make_diffs) { + memset(buf72, 0, sizeof buf72); + memset(buf82, 0, sizeof buf82); + } + /* + Attribute: <integer2D> and <integer2D> + position integer2D of </g1> integer2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + 6 differences found + Attribute: <float2D> and <float2D> + position float2D of </g1> float2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + + write_attr(loc_id, 2, dims2, "integer2D", H5T_NATIVE_INT, buf72); + write_attr(loc_id, 2, dims2, "float2D", H5T_NATIVE_FLOAT, buf82); + + /*------------------------------------------------------------------------- + * 3D attributes + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + if (make_diffs) + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) + for (l = 0; l < 2; l++) + buf13[i][j][k][l] = 'z'; + + /* + buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", + "rs","tu","vw","xz","AB","CD","EF","GH", + "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; + + Attribute: <string3D> and <string3D> + position string3D of </g1> string3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] a z + [ 0 0 0 ] b z + [ 0 0 1 ] c z + [ 0 0 1 ] d z + [ 0 1 0 ] e z + [ 0 1 0 ] f z + [ 0 1 1 ] g z + [ 0 1 1 ] h z + [ 0 2 0 ] i z + [ 0 2 0 ] j z + [ 0 2 1 ] k z + [ 0 2 1 ] l z + [ 1 0 0 ] m z + [ 1 0 0 ] n z + [ 1 0 1 ] p z + [ 1 0 1 ] q z + [ 1 1 0 ] r z + [ 1 1 0 ] s z + [ 1 1 1 ] t z + [ 1 1 1 ] u z + [ 1 2 0 ] v z + [ 1 2 0 ] w z + [ 1 2 1 ] x z + [ 2 0 0 ] A z + [ 2 0 0 ] B z + [ 2 0 1 ] C z + [ 2 0 1 ] D z + [ 2 1 0 ] E z + [ 2 1 0 ] F z + [ 2 1 1 ] G z + [ 2 1 1 ] H z + [ 2 2 0 ] I z + [ 2 2 0 ] J z + [ 2 2 1 ] K z + [ 2 2 1 ] L z + [ 3 0 0 ] M z + [ 3 0 0 ] N z + [ 3 0 1 ] P z + [ 3 0 1 ] Q z + [ 3 1 0 ] R z + [ 3 1 0 ] S z + [ 3 1 1 ] T z + [ 3 1 1 ] U z + [ 3 2 0 ] V z + [ 3 2 0 ] W z + [ 3 2 1 ] X z + [ 3 2 1 ] Z z + */ + + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) + buf13a[i][j][k] = buf13[i][j][k]; + + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid, H5T_VARIABLE); + write_attr(loc_id, 3, dims3, "string3D", tid, buf13a); + status = H5Tclose(tid); + + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid, (size_t) STR_SIZE); + write_attr(loc_id, 3, dims3, "VLstring3D", tid, buf13); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + n = 1; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) + if (make_diffs) + buf23[i][j][k] = 0; + else + buf23[i][j][k] = (char) n++; + + /* + position bitfield3D of </g1> bitfield3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 1 ] 2 0 2 + [ 0 1 0 ] 3 0 3 + [ 0 1 1 ] 4 0 4 + [ 0 2 0 ] 5 0 5 + [ 0 2 1 ] 6 0 6 + [ 1 0 0 ] 7 0 7 + [ 1 0 1 ] 8 0 8 + [ 1 1 0 ] 9 0 9 + [ 1 1 1 ] 10 0 10 + [ 1 2 0 ] 11 0 11 + [ 1 2 1 ] 12 0 12 + [ 2 0 0 ] 13 0 13 + [ 2 0 1 ] 14 0 14 + [ 2 1 0 ] 15 0 15 + [ 2 1 1 ] 16 0 16 + [ 2 2 0 ] 17 0 17 + [ 2 2 1 ] 18 0 18 + [ 3 0 0 ] 19 0 19 + [ 3 0 1 ] 20 0 20 + [ 3 1 0 ] 21 0 21 + [ 3 1 1 ] 22 0 22 + [ 3 2 0 ] 23 0 23 + [ 3 2 1 ] 24 0 24 + */ + + tid = H5Tcopy(H5T_STD_B8LE); + write_attr(loc_id, 3, dims3, "bitfield3D", tid, buf23); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + tid = H5Tcreate(H5T_OPAQUE, (size_t) 1); + status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ + write_attr(loc_id, 3, dims3, "opaque3D", tid, buf23); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + n = 1; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) + if (make_diffs) { + buf33[i][j][k].a = 0; + buf33[i][j][k].b = 0.0F; + } else { + buf33[i][j][k].a = (char) n++; + buf33[i][j][k].b = n++; + } + /*position compound3D of </g1> compound3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 0 ] 2 0 2 + [ 0 0 1 ] 3 0 3 + [ 0 0 1 ] 4 0 4 + [ 0 1 0 ] 5 0 5 + [ 0 1 0 ] 6 0 6 + [ 0 1 1 ] 7 0 7 + [ 0 1 1 ] 8 0 8 + [ 0 2 0 ] 9 0 9 + [ 0 2 0 ] 10 0 10 + [ 0 2 1 ] 11 0 11 + [ 0 2 1 ] 12 0 12 + [ 1 0 0 ] 13 0 13 + [ 1 0 0 ] 14 0 14 + [ 1 0 1 ] 15 0 15 + [ 1 0 1 ] 16 0 16 + [ 1 1 0 ] 17 0 17 + [ 1 1 0 ] 18 0 18 + [ 1 1 1 ] 19 0 19 + [ 1 1 1 ] 20 0 20 + [ 1 2 0 ] 21 0 21 + [ 1 2 0 ] 22 0 22 + [ 1 2 1 ] 23 0 23 + [ 1 2 1 ] 24 0 24 + [ 2 0 0 ] 25 0 25 + [ 2 0 0 ] 26 0 26 + [ 2 0 1 ] 27 0 27 + [ 2 0 1 ] 28 0 28 + [ 2 1 0 ] 29 0 29 + [ 2 1 0 ] 30 0 30 + [ 2 1 1 ] 31 0 31 + [ 2 1 1 ] 32 0 32 + [ 2 2 0 ] 33 0 33 + [ 2 2 0 ] 34 0 34 + [ 2 2 1 ] 35 0 35 + [ 2 2 1 ] 36 0 36 + [ 3 0 0 ] 37 0 37 + [ 3 0 0 ] 38 0 38 + [ 3 0 1 ] 39 0 39 + [ 3 0 1 ] 40 0 40 + [ 3 1 0 ] 41 0 41 + [ 3 1 0 ] 42 0 42 + [ 3 1 1 ] 43 0 43 + [ 3 1 1 ] 44 0 44 + [ 3 2 0 ] 45 0 45 + [ 3 2 0 ] 46 0 46 + [ 3 2 1 ] 47 0 47 + [ 3 2 1 ] 48 0 48 + */ + + tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t)); + H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); + H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); + write_attr(loc_id, 3, dims3, "compound3D", tid, buf33); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_REFERENCE (H5R_OBJECT object reference) + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) { + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) + status = H5Rcreate(&buf43[i][j][k], fid, dset_name, + H5R_OBJECT, (hid_t) -1); + write_attr(loc_id, 3, dims3, "reference3D", H5T_STD_REF_OBJ, buf43); + } + + /*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) + if (make_diffs) + buf453[i][j][k] = RED; + else + buf453[i][j][k] = GREEN; + + /* + position enum3D of </g1> enum3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] GREEN RED + [ 0 0 1 ] GREEN RED + [ 0 1 0 ] GREEN RED + [ 0 1 1 ] GREEN RED + [ 0 2 0 ] GREEN RED + [ 0 2 1 ] GREEN RED + [ 1 0 0 ] GREEN RED + [ 1 0 1 ] GREEN RED + [ 1 1 0 ] GREEN RED + [ 1 1 1 ] GREEN RED + [ 1 2 0 ] GREEN RED + [ 1 2 1 ] GREEN RED + [ 2 0 0 ] GREEN RED + [ 2 0 1 ] GREEN RED + [ 2 1 0 ] GREEN RED + [ 2 1 1 ] GREEN RED + [ 2 2 0 ] GREEN RED + [ 2 2 1 ] GREEN RED + [ 3 0 0 ] GREEN RED + [ 3 0 1 ] GREEN RED + [ 3 1 0 ] GREEN RED + [ 3 1 1 ] GREEN RED + [ 3 2 0 ] GREEN RED + [ 3 2 1 ] GREEN RED + */ + + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "GREEN", (val = 1, &val)); + write_attr(loc_id, 3, dims3, "enum3D", tid, buf453); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + n = 0; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) { + buf53[i][j][k].p = HDmalloc((size_t)(i + 1) * sizeof(int)); + buf53[i][j][k].len = (size_t)(i + 1); + for (l = 0; l < i + 1; l++) + if (make_diffs) + ((int *) buf53[i][j][k].p)[l] = 0; + else + ((int *) buf53[i][j][k].p)[l] = n++; + } + /* + position vlen3D of </g1> vlen3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 1 ] 1 0 1 + [ 0 1 0 ] 2 0 2 + [ 0 1 1 ] 3 0 3 + [ 0 2 0 ] 4 0 4 + [ 0 2 1 ] 5 0 5 + [ 1 0 0 ] 6 0 6 + [ 1 0 0 ] 7 0 7 + [ 1 0 1 ] 8 0 8 + [ 1 0 1 ] 9 0 9 + [ 1 1 0 ] 10 0 10 + etc + */ + sid = H5Screate_simple(3, dims3, NULL); + tid = H5Tvlen_create(H5T_NATIVE_INT); + aid = H5Acreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite(aid, tid, buf53); + assert(status >= 0); + status = H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53); + assert(status >= 0); + status = H5Aclose(aid); + status = H5Tclose(tid); + status = H5Sclose(sid); + + /*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + n = 1; + for (i = 0; i < 24; i++) { + for (j = 0; j < (int) dimarray[0]; j++) { + if (make_diffs) + buf63[i][j] = 0; + else + buf63[i][j] = n++; + } + } + /* + position array3D of </g1> array3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 0 ] 2 0 2 + [ 0 0 0 ] 3 0 3 + [ 0 0 1 ] 4 0 4 + [ 0 0 1 ] 5 0 5 + [ 0 0 1 ] 6 0 6 + [ 0 1 0 ] 7 0 7 + etc + */ + + tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); + write_attr(loc_id, 3, dims3, "array3D", tid, buf63); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + n = 1; + f = 1; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) { + if (make_diffs) { + buf73[i][j][k] = 0; + buf83[i][j][k] = 0.0F; + } + else { + buf73[i][j][k] = n++; + buf83[i][j][k] = f++; + } + } + + /* + position integer3D of </g1> integer3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 1 ] 2 0 2 + [ 0 1 0 ] 3 0 3 + [ 0 1 1 ] 4 0 4 + [ 0 2 0 ] 5 0 5 + [ 0 2 1 ] 6 0 6 + [ 1 0 0 ] 7 0 7 + [ 1 0 1 ] 8 0 8 + [ 1 1 0 ] 9 0 9 + [ 1 1 1 ] 10 0 10 + etc + */ + write_attr(loc_id, 3, dims3, "integer3D", H5T_NATIVE_INT, buf73); + write_attr(loc_id, 3, dims3, "float3D", H5T_NATIVE_FLOAT, buf83); +} + +/*------------------------------------------------------------------------- + * Function: write_attr_in + * + * Purpose: write attributes in LOC_ID (dataset, group, named datatype) + * + *------------------------------------------------------------------------- + */ +static +void write_attr_in(hid_t loc_id, const char* dset_name, hid_t fid, int make_diffs /* flag to modify data buffers */) +{ + /* Compound datatype */ + typedef struct s_t { + char a; + double b; + } s_t; + + typedef enum { + RED, GREEN + } e_t; + + hid_t aid = -1; + hid_t sid = -1; + hid_t tid = -1; + herr_t status; + int val, i, j, k, l, n; + float f; + + /* create 1D attributes with dimension [2], 2 elements */ + hsize_t dims[1] = { 2 }; + char buf1[2][STR_SIZE] = { "ab", "de" }; /* string */ + char *buf1a[2]; /* VL string */ + char buf2[2] = { 1, 2 }; /* bitfield, opaque */ + s_t buf3[2] = { { 1, 2.0F }, { 3, 4.0F } }; /* compound */ + hobj_ref_t buf4[2]; /* reference */ + e_t buf45[2] = { RED, RED }; /* enum */ + hvl_t buf5[2]; /* vlen */ + hsize_t dimarray[1] = { 3 }; /* array dimension */ + int buf6[2][3] = { { 1, 2, 3 }, { 4, 5, 6 } }; /* array */ + int buf7[2] = { 1, 2 }; /* integer */ + float buf8[2] = { 1.0F, 2.0F }; /* float */ + + /* create 2D attributes with dimension [3][2], 6 elements */ + hsize_t dims2[2] = { 3, 2 }; + char buf12[3][2][STR_SIZE] = { { "ab", "cd" }, { "ef", "gh" }, { "ij", "kl" } }; /* string */ + char *buf12a[3][2]; /* VL string */ + char buf22[3][2] = { { 1, 2 }, { 3, 4 }, { 5, 6 } }; /* bitfield, opaque */ + s_t buf32[6] = { { 1, 2.0F }, { 3, 4.0F }, { 5, 6.0F }, { 7, 8.0F }, { 9, 10.0F }, { 11, 12.0F } }; /* compound */ + hobj_ref_t buf42[3][2]; /* reference */ + e_t buf452[3][2]; /* enum */ + hvl_t buf52[3][2]; /* vlen */ + int buf62[6][3] = { { 1, 2, 3 }, { 4, 5, 6 }, { 7, 8, 9 }, { 10, 11, 12 }, { 13, 14, 15 }, { 16, 17, 18 } }; /* array */ + int buf72[3][2] = { { 1, 2 }, { 3, 4 }, { 5, 6 } }; /* integer */ + float buf82[3][2] = { { 1.0F, 2.0F }, { 3.0F, 4.0F }, { 5.0F, 6.0F } }; /* float */ + + /* create 3D attributes with dimension [4][3][2], 24 elements */ + hsize_t dims3[3] = { 4, 3, 2 }; + char buf13[4][3][2][STR_SIZE] = { { { "ab", "cd" }, { "ef", "gh" }, { "ij", "kl" } }, + { { "mn", "pq" }, { "rs", "tu" }, { "vw", "xz" } }, + { { "AB", "CD" }, { "EF", "GH" }, { "IJ", "KL" } }, + { { "MN", "PQ" }, { "RS", "TU" }, { "VW", "XZ" } } }; /* string */ + char *buf13a[4][3][2]; /* VL string */ + char buf23[4][3][2]; /* bitfield, opaque */ + s_t buf33[4][3][2]; /* compound */ + hobj_ref_t buf43[4][3][2]; /* reference */ + e_t buf453[4][3][2]; /* enum */ + hvl_t buf53[4][3][2]; /* vlen */ + int buf63[24][3]; /* array */ + int buf73[4][3][2]; /* integer */ + float buf83[4][3][2]; /* float */ + + /*------------------------------------------------------------------------- + * 1D attributes + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5T_STRING *------------------------------------------------------------------------- */ + if (make_diffs) - { - for (i=0; i<2; i++) - { - buf45[i]=GREEN; + for (i = 0; i < 2; i++) + for (j = 0; j < 2; j++) + buf1[i][j] = 'z'; + /* + buf1[2][2]= {"ab","de"}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <string> and <string> + position string of </g1> string of </g1> difference + ------------------------------------------------------------ + [ 0 ] a z + [ 0 ] b z + [ 1 ] d z + [ 1 ] e z + */ + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid, (size_t) STR_SIZE); + write_attr(loc_id, 1, dims, "string", tid, buf1); + status = H5Tclose(tid); + + for (i = 0; i < 2; i++) + buf1a[i] = buf1[i]; + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid, H5T_VARIABLE); + write_attr(loc_id, 1, dims, "VLstring", tid, buf1a); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + if (make_diffs) + for (i = 0; i < 2; i++) + buf2[i] = buf2[1] = 0; + /* + buf2[2]= {1,2}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <bitfield> and <bitfield> + position bitfield of </g1> bitfield of </g1> difference + position opaque of </g1> opaque of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + */ + + tid = H5Tcopy(H5T_STD_B8LE); + write_attr(loc_id, 1, dims, "bitfield", tid, buf2); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + + /* + buf2[2]= {1,2}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <opaque> and <opaque> + position opaque of </g1> opaque of </g1> difference + position opaque of </g1> opaque of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + */ + + tid = H5Tcreate(H5T_OPAQUE, (size_t) 1); + status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ + write_attr(loc_id, 1, dims, "opaque", tid, buf2); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + if (make_diffs) + for (i = 0; i < 2; i++) { + buf3[i].a = 0; + buf3[i].b = 0; } + /* + buf3[2]= {{1,2},{3,4}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <compound> and <compound> + position compound of </g1> compound of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 5 4 + [ 0 ] 2 5 3 + [ 1 ] 3 5 2 + [ 1 ] 4 5 1 + */ + + tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t)); + H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); + H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); + write_attr(loc_id, 1, dims, "compound", tid, buf3); + status = H5Tclose(tid); + + /*------------------------------------------------------------------------- + * H5T_REFERENCE (H5R_OBJECT object reference) + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) { + status = H5Rcreate(&buf4[0], fid, dset_name, H5R_OBJECT, (hid_t) -1); + status = H5Rcreate(&buf4[1], fid, dset_name, H5R_OBJECT, (hid_t) -1); + write_attr(loc_id, 1, dims, "reference", H5T_STD_REF_OBJ, buf4); } + + /*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + if (make_diffs) + for (i = 0; i < 2; i++) + buf45[i] = GREEN; /* - buf45[2]= {RED,RED}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - Attribute: <enum> and <enum> - position enum of </g1> enum of </g1> difference - ------------------------------------------------------------ - [ 0 ] RED GREEN - [ 1 ] RED GREEN + buf45[2]= {RED,RED}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <enum> and <enum> + position enum of </g1> enum of </g1> difference + ------------------------------------------------------------ + [ 0 ] RED GREEN + [ 1 ] RED GREEN */ tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); H5Tenum_insert(tid, "GREEN", (val = 1, &val)); - write_attr(loc_id,1,dims,"enum",tid,buf45); + write_attr(loc_id, 1, dims, "enum", tid, buf45); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -5652,27 +6325,26 @@ void write_attr_in(hid_t loc_id, /* Allocate and initialize VL dataset to write */ buf5[0].len = 1; - buf5[0].p = HDmalloc( 1 * sizeof(int)); - ((int *)buf5[0].p)[0]=1; + buf5[0].p = HDmalloc(1 * sizeof(int)); + ((int *) buf5[0].p)[0] = 1; buf5[1].len = 2; - buf5[1].p = HDmalloc( 2 * sizeof(int)); - ((int *)buf5[1].p)[0]=2; - ((int *)buf5[1].p)[1]=3; + buf5[1].p = HDmalloc(2 * sizeof(int)); + ((int *) buf5[1].p)[0] = 2; + ((int *) buf5[1].p)[1] = 3; - if (make_diffs) - { - ((int *)buf5[0].p)[0]=0; - ((int *)buf5[1].p)[0]=0; - ((int *)buf5[1].p)[1]=0; + if (make_diffs) { + ((int *) buf5[0].p)[0] = 0; + ((int *) buf5[1].p)[0] = 0; + ((int *) buf5[1].p)[1] = 0; } /* - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - position vlen of </g1> vlen of </g1> difference - ------------------------------------------------------------ - [ 0 ] 1 0 1 - [ 1 ] 2 0 2 - [ 1 ] 3 0 3 + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + position vlen of </g1> vlen of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + [ 1 ] 3 0 3 */ sid = H5Screate_simple(1, dims, NULL); @@ -5691,27 +6363,24 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<3; j++) - { - buf6[i][j]=0; - } + if (make_diffs) { + for (i = 0; i < 2; i++) + for (j = 0; j < 3; j++) + buf6[i][j] = 0; } /* - buf6[2][3]= {{1,2,3},{4,5,6}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - Attribute: <array> and <array> - position array of </g1> array of </g1> difference - ------------------------------------------------------------ - [ 0 ] 1 0 1 - [ 0 ] 2 0 2 - [ 0 ] 3 0 3 - [ 1 ] 4 0 4 - [ 1 ] 5 0 5 - [ 1 ] 6 0 6 + buf6[2][3]= {{1,2,3},{4,5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <array> and <array> + position array of </g1> array of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 0 ] 2 0 2 + [ 0 ] 3 0 3 + [ 1 ] 4 0 4 + [ 1 ] 5 0 5 + [ 1 ] 6 0 6 */ tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_attr(loc_id, 1, dims, "array", tid, buf6); @@ -5722,31 +6391,28 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf7[i]=0; - buf8[i]=0; + if (make_diffs) { + for (i = 0; i < 2; i++) { + buf7[i] = 0; + buf8[i] = 0; } } /* - buf7[2]= {1,2}; - buf8[2]= {1,2}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - position integer of </g1> integer of </g1> difference - ------------------------------------------------------------ - [ 0 ] 1 0 1 - [ 1 ] 2 0 2 - position float of </g1> float of </g1> difference - ------------------------------------------------------------ - [ 0 ] 1 0 1 - [ 1 ] 2 0 2 - */ - write_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7); - write_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8); - + buf7[2]= {1,2}; + buf8[2]= {1,2}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + position integer of </g1> integer of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + position float of </g1> float of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + */ + write_attr(loc_id, 1, dims, "integer", H5T_NATIVE_INT, buf7); + write_attr(loc_id, 1, dims, "float", H5T_NATIVE_FLOAT, buf8); /*------------------------------------------------------------------------- * 2D attributes @@ -5757,50 +6423,45 @@ void write_attr_in(hid_t loc_id, * H5T_STRING *------------------------------------------------------------------------- */ - if (make_diffs) - { - for (i=0; i<3; i++) - for (j=0; j<2; j++) - for (k=0; k<2; k++) - buf12[i][j][k]='z'; + if (make_diffs) { + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) + for (k = 0; k < 2; k++) + buf12[i][j][k] = 'z'; } /* - buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: <string2D> and <string2D> - position string2D of </g1> string2D of </g1> difference - ------------------------------------------------------------ - [ 0 0 ] a z - [ 0 0 ] b z - [ 0 1 ] c z - [ 0 1 ] d z - [ 1 0 ] e z - [ 1 0 ] f z - [ 1 1 ] g z - [ 1 1 ] h z - [ 2 0 ] i z - [ 2 0 ] j z - [ 2 1 ] k z - [ 2 1 ] l z + buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <string2D> and <string2D> + position string2D of </g1> string2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] a z + [ 0 0 ] b z + [ 0 1 ] c z + [ 0 1 ] d z + [ 1 0 ] e z + [ 1 0 ] f z + [ 1 1 ] g z + [ 1 1 ] h z + [ 2 0 ] i z + [ 2 0 ] j z + [ 2 1 ] k z + [ 2 1 ] l z */ tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid, (size_t)STR_SIZE); - write_attr(loc_id,2,dims2,"string2D",tid,buf12); + status = H5Tset_size(tid, (size_t) STR_SIZE); + write_attr(loc_id, 2, dims2, "string2D", tid, buf12); status = H5Tclose(tid); - for (i=0; i<3; i++) - { - for (j=0; j<2; j++) - { + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) + buf12a[i][j] = buf12[i][j]; - buf12a[i][j]=buf12[i][j]; - } - } tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid, H5T_VARIABLE); - write_attr(loc_id,2,dims2,"VLstring2D",tid,buf12a); + status = H5Tset_size(tid, H5T_VARIABLE); + write_attr(loc_id, 2, dims2, "VLstring2D", tid, buf12a); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -5809,27 +6470,23 @@ void write_attr_in(hid_t loc_id, */ if (make_diffs) - { - memset(buf22,0,sizeof buf22); - } - + memset(buf22, 0, sizeof buf22); /* - buf22[3][2]= {{1,2},{3,4},{5,6}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: <bitfield2D> and <bitfield2D> - position bitfield2D of </g1> bitfield2D of </g1> difference - ------------------------------------------------------------ - [ 0 0 ] 1 0 1 - [ 0 1 ] 2 0 2 - [ 1 0 ] 3 0 3 - [ 1 1 ] 4 0 4 - [ 2 0 ] 5 0 5 - [ 2 1 ] 6 0 6 + buf22[3][2]= {{1,2},{3,4},{5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <bitfield2D> and <bitfield2D> + position bitfield2D of </g1> bitfield2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 */ - tid = H5Tcopy(H5T_STD_B8LE); - write_attr(loc_id,2,dims2,"bitfield2D",tid,buf22); + write_attr(loc_id, 2, dims2, "bitfield2D", tid, buf22); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -5838,21 +6495,21 @@ void write_attr_in(hid_t loc_id, */ /* - buf22[3][2]= {{1,2},{3,4},{5,6}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: <opaque2D> and <opaque2D> - position opaque2D of </g1> opaque2D of </g1> difference - ------------------------------------------------------------ - [ 0 0 ] 1 0 1 - [ 0 1 ] 2 0 2 - [ 1 0 ] 3 0 3 - [ 1 1 ] 4 0 4 - [ 2 0 ] 5 0 5 - [ 2 1 ] 6 0 6 - */ - tid = H5Tcreate(H5T_OPAQUE, (size_t)1); + buf22[3][2]= {{1,2},{3,4},{5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <opaque2D> and <opaque2D> + position opaque2D of </g1> opaque2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + tid = H5Tcreate(H5T_OPAQUE, (size_t) 1); status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ - write_attr(loc_id,2,dims2,"opaque2D",tid,buf22); + write_attr(loc_id, 2, dims2, "opaque2D", tid, buf22); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -5860,29 +6517,25 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ if (make_diffs) - { - memset(buf32,0,sizeof buf32); - } - + memset(buf32, 0, sizeof buf32); /* - buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: <opaque2D> and <opaque2D> - position opaque2D of </g1> opaque2D of </g1> difference - ------------------------------------------------------------ - [ 0 0 ] 1 0 1 - [ 0 1 ] 2 0 2 - [ 1 0 ] 3 0 3 - [ 1 1 ] 4 0 4 - [ 2 0 ] 5 0 5 - [ 2 1 ] 6 0 6 - */ - - - tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <opaque2D> and <opaque2D> + position opaque2D of </g1> opaque2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + + tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_attr(loc_id,2,dims2,"compound2D",tid,buf32); + write_attr(loc_id, 2, dims2, "compound2D", tid, buf32); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -5890,44 +6543,41 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 3; i++) { - for (j = 0; j < 2; j++) { - status=H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,(hid_t)-1); - } - } - write_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42); + if (dset_name) { + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) + status = H5Rcreate(&buf42[i][j], fid, dset_name, H5R_OBJECT, (hid_t) -1); + write_attr(loc_id, 2, dims2, "reference2D", H5T_STD_REF_OBJ, buf42); } /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ - for (i=0; i<3; i++) - { - for (j=0; j<2; j++) - { - if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED; + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) { + if (make_diffs) + buf452[i][j] = GREEN; + else + buf452[i][j] = RED; } - } /* - Attribute: <enum2D> and <enum2D> - position enum2D of </g1> enum2D of </g1> difference - ------------------------------------------------------------ - [ 0 0 ] RED GREEN - [ 0 1 ] RED GREEN - [ 1 0 ] RED GREEN - [ 1 1 ] RED GREEN - [ 2 0 ] RED GREEN - [ 2 1 ] RED GREEN + Attribute: <enum2D> and <enum2D> + position enum2D of </g1> enum2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] RED GREEN + [ 0 1 ] RED GREEN + [ 1 0 ] RED GREEN + [ 1 1 ] RED GREEN + [ 2 0 ] RED GREEN + [ 2 1 ] RED GREEN */ tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); H5Tenum_insert(tid, "GREEN", (val = 1, &val)); - write_attr(loc_id,2,dims2,"enum2D",tid,buf452); + write_attr(loc_id, 2, dims2, "enum2D", tid, buf452); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -5936,33 +6586,33 @@ void write_attr_in(hid_t loc_id, */ /* Allocate and initialize VL dataset to write */ - n=0; - for(i = 0; i < 3; i++) { - for(j = 0; j < 2; j++) { + n = 0; + for (i = 0; i < 3; i++) { + for (j = 0; j < 2; j++) { buf52[i][j].p = HDmalloc((size_t)(i + 1) * sizeof(int)); buf52[i][j].len = (size_t)(i + 1); - for(l = 0; l < i + 1; l++) - if(make_diffs) - ((int *)buf52[i][j].p)[l] = 0; + for (l = 0; l < i + 1; l++) + if (make_diffs) + ((int *) buf52[i][j].p)[l] = 0; else - ((int *)buf52[i][j].p)[l] = n++; + ((int *) buf52[i][j].p)[l] = n++; } } /* - position vlen2D of </g1> vlen2D of </g1> difference - ------------------------------------------------------------ - [ 0 1 ] 1 0 1 - [ 1 0 ] 2 0 2 - [ 1 0 ] 3 0 3 - [ 1 1 ] 4 0 4 - [ 1 1 ] 5 0 5 - [ 2 0 ] 6 0 6 - [ 2 0 ] 7 0 7 - [ 2 0 ] 8 0 8 - [ 2 1 ] 9 0 9 - [ 2 1 ] 10 0 10 - [ 2 1 ] 11 0 11 + position vlen2D of </g1> vlen2D of </g1> difference + ------------------------------------------------------------ + [ 0 1 ] 1 0 1 + [ 1 0 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 1 1 ] 5 0 5 + [ 2 0 ] 6 0 6 + [ 2 0 ] 7 0 7 + [ 2 0 ] 8 0 8 + [ 2 1 ] 9 0 9 + [ 2 1 ] 10 0 10 + [ 2 1 ] 11 0 11 */ sid = H5Screate_simple(2, dims2, NULL); @@ -5982,34 +6632,32 @@ void write_attr_in(hid_t loc_id, */ if (make_diffs) - { - memset(buf62,0,sizeof buf62); - } + memset(buf62, 0, sizeof buf62); /* - buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - Attribute: <array2D> and <array2D> - position array2D of </g1> array2D of </g1> difference - ------------------------------------------------------------ - [ 0 0 ] 1 0 1 - [ 0 0 ] 2 0 2 - [ 0 0 ] 3 0 3 - [ 0 1 ] 4 0 4 - [ 0 1 ] 5 0 5 - [ 0 1 ] 6 0 6 - [ 1 0 ] 7 0 7 - [ 1 0 ] 8 0 8 - [ 1 0 ] 9 0 9 - [ 1 1 ] 10 0 10 - [ 1 1 ] 11 0 11 - [ 1 1 ] 12 0 12 - [ 2 0 ] 13 0 13 - [ 2 0 ] 14 0 14 - [ 2 0 ] 15 0 15 - [ 2 1 ] 16 0 16 - [ 2 1 ] 17 0 17 - [ 2 1 ] 18 0 18 + buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <array2D> and <array2D> + position array2D of </g1> array2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 0 ] 2 0 2 + [ 0 0 ] 3 0 3 + [ 0 1 ] 4 0 4 + [ 0 1 ] 5 0 5 + [ 0 1 ] 6 0 6 + [ 1 0 ] 7 0 7 + [ 1 0 ] 8 0 8 + [ 1 0 ] 9 0 9 + [ 1 1 ] 10 0 10 + [ 1 1 ] 11 0 11 + [ 1 1 ] 12 0 12 + [ 2 0 ] 13 0 13 + [ 2 0 ] 14 0 14 + [ 2 0 ] 15 0 15 + [ 2 1 ] 16 0 16 + [ 2 1 ] 17 0 17 + [ 2 1 ] 18 0 18 */ tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_attr(loc_id, 2, dims2, "array2D", tid, buf62); @@ -6020,36 +6668,34 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ - if (make_diffs) - { - memset(buf72,0,sizeof buf72); - memset(buf82,0,sizeof buf82); + if (make_diffs) { + memset(buf72, 0, sizeof buf72); + memset(buf82, 0, sizeof buf82); } /* - Attribute: <integer2D> and <integer2D> - position integer2D of </g1> integer2D of </g1> difference - ------------------------------------------------------------ - [ 0 0 ] 1 0 1 - [ 0 1 ] 2 0 2 - [ 1 0 ] 3 0 3 - [ 1 1 ] 4 0 4 - [ 2 0 ] 5 0 5 - [ 2 1 ] 6 0 6 - 6 differences found - Attribute: <float2D> and <float2D> - position float2D of </g1> float2D of </g1> difference - ------------------------------------------------------------ - [ 0 0 ] 1 0 1 - [ 0 1 ] 2 0 2 - [ 1 0 ] 3 0 3 - [ 1 1 ] 4 0 4 - [ 2 0 ] 5 0 5 - [ 2 1 ] 6 0 6 - */ - - write_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72); - write_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82); - + Attribute: <integer2D> and <integer2D> + position integer2D of </g1> integer2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + 6 differences found + Attribute: <float2D> and <float2D> + position float2D of </g1> float2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + + write_attr(loc_id, 2, dims2, "integer2D", H5T_NATIVE_INT, buf72); + write_attr(loc_id, 2, dims2, "float2D", H5T_NATIVE_FLOAT, buf82); /*------------------------------------------------------------------------- * 3D attributes @@ -6061,90 +6707,83 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ - if (make_diffs) - { - for (i=0; i<4; i++) - for (j=0; j<3; j++) - for (k=0; k<2; k++) - for (l=0; l<2; l++) - buf13[i][j][k][l]='z'; + if (make_diffs) { + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) + for (l = 0; l < 2; l++) + buf13[i][j][k][l] = 'z'; } /* - buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", - "rs","tu","vw","xz","AB","CD","EF","GH", - "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; - - Attribute: <string3D> and <string3D> - position string3D of </g1> string3D of </g1> difference - ------------------------------------------------------------ - [ 0 0 0 ] a z - [ 0 0 0 ] b z - [ 0 0 1 ] c z - [ 0 0 1 ] d z - [ 0 1 0 ] e z - [ 0 1 0 ] f z - [ 0 1 1 ] g z - [ 0 1 1 ] h z - [ 0 2 0 ] i z - [ 0 2 0 ] j z - [ 0 2 1 ] k z - [ 0 2 1 ] l z - [ 1 0 0 ] m z - [ 1 0 0 ] n z - [ 1 0 1 ] p z - [ 1 0 1 ] q z - [ 1 1 0 ] r z - [ 1 1 0 ] s z - [ 1 1 1 ] t z - [ 1 1 1 ] u z - [ 1 2 0 ] v z - [ 1 2 0 ] w z - [ 1 2 1 ] x z - [ 2 0 0 ] A z - [ 2 0 0 ] B z - [ 2 0 1 ] C z - [ 2 0 1 ] D z - [ 2 1 0 ] E z - [ 2 1 0 ] F z - [ 2 1 1 ] G z - [ 2 1 1 ] H z - [ 2 2 0 ] I z - [ 2 2 0 ] J z - [ 2 2 1 ] K z - [ 2 2 1 ] L z - [ 3 0 0 ] M z - [ 3 0 0 ] N z - [ 3 0 1 ] P z - [ 3 0 1 ] Q z - [ 3 1 0 ] R z - [ 3 1 0 ] S z - [ 3 1 1 ] T z - [ 3 1 1 ] U z - [ 3 2 0 ] V z - [ 3 2 0 ] W z - [ 3 2 1 ] X z - [ 3 2 1 ] Z z + buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", + "rs","tu","vw","xz","AB","CD","EF","GH", + "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; + + Attribute: <string3D> and <string3D> + position string3D of </g1> string3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] a z + [ 0 0 0 ] b z + [ 0 0 1 ] c z + [ 0 0 1 ] d z + [ 0 1 0 ] e z + [ 0 1 0 ] f z + [ 0 1 1 ] g z + [ 0 1 1 ] h z + [ 0 2 0 ] i z + [ 0 2 0 ] j z + [ 0 2 1 ] k z + [ 0 2 1 ] l z + [ 1 0 0 ] m z + [ 1 0 0 ] n z + [ 1 0 1 ] p z + [ 1 0 1 ] q z + [ 1 1 0 ] r z + [ 1 1 0 ] s z + [ 1 1 1 ] t z + [ 1 1 1 ] u z + [ 1 2 0 ] v z + [ 1 2 0 ] w z + [ 1 2 1 ] x z + [ 2 0 0 ] A z + [ 2 0 0 ] B z + [ 2 0 1 ] C z + [ 2 0 1 ] D z + [ 2 1 0 ] E z + [ 2 1 0 ] F z + [ 2 1 1 ] G z + [ 2 1 1 ] H z + [ 2 2 0 ] I z + [ 2 2 0 ] J z + [ 2 2 1 ] K z + [ 2 2 1 ] L z + [ 3 0 0 ] M z + [ 3 0 0 ] N z + [ 3 0 1 ] P z + [ 3 0 1 ] Q z + [ 3 1 0 ] R z + [ 3 1 0 ] S z + [ 3 1 1 ] T z + [ 3 1 1 ] U z + [ 3 2 0 ] V z + [ 3 2 0 ] W z + [ 3 2 1 ] X z + [ 3 2 1 ] Z z */ tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid, (size_t)STR_SIZE); - write_attr(loc_id,3,dims3,"string3D",tid,buf13); + status = H5Tset_size(tid, (size_t) STR_SIZE); + write_attr(loc_id, 3, dims3, "string3D", tid, buf13); status = H5Tclose(tid); - for (i=0; i<4; i++) - { - for (j=0; j<3; j++) - { - for (k=0; k<2; k++) - { - buf13a[i][j][k]=buf13[i][j][k]; - } - } - } + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) + buf13a[i][j][k] = buf13[i][j][k]; tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid, H5T_VARIABLE); - write_attr(loc_id,3,dims3,"VLstring3D",tid,buf13a); + status = H5Tset_size(tid, H5T_VARIABLE); + write_attr(loc_id, 3, dims3, "VLstring3D", tid, buf13a); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6152,58 +6791,55 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { + n = 1; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) for (k = 0; k < 2; k++) { - if(make_diffs) + if (make_diffs) buf23[i][j][k] = 0; else - buf23[i][j][k] = (char)n++; + buf23[i][j][k] = (char) n++; } - } - } - /* - position bitfield3D of </g1> bitfield3D of </g1> difference - ------------------------------------------------------------ - [ 0 0 0 ] 1 0 1 - [ 0 0 1 ] 2 0 2 - [ 0 1 0 ] 3 0 3 - [ 0 1 1 ] 4 0 4 - [ 0 2 0 ] 5 0 5 - [ 0 2 1 ] 6 0 6 - [ 1 0 0 ] 7 0 7 - [ 1 0 1 ] 8 0 8 - [ 1 1 0 ] 9 0 9 - [ 1 1 1 ] 10 0 10 - [ 1 2 0 ] 11 0 11 - [ 1 2 1 ] 12 0 12 - [ 2 0 0 ] 13 0 13 - [ 2 0 1 ] 14 0 14 - [ 2 1 0 ] 15 0 15 - [ 2 1 1 ] 16 0 16 - [ 2 2 0 ] 17 0 17 - [ 2 2 1 ] 18 0 18 - [ 3 0 0 ] 19 0 19 - [ 3 0 1 ] 20 0 20 - [ 3 1 0 ] 21 0 21 - [ 3 1 1 ] 22 0 22 - [ 3 2 0 ] 23 0 23 - [ 3 2 1 ] 24 0 24 + position bitfield3D of </g1> bitfield3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 1 ] 2 0 2 + [ 0 1 0 ] 3 0 3 + [ 0 1 1 ] 4 0 4 + [ 0 2 0 ] 5 0 5 + [ 0 2 1 ] 6 0 6 + [ 1 0 0 ] 7 0 7 + [ 1 0 1 ] 8 0 8 + [ 1 1 0 ] 9 0 9 + [ 1 1 1 ] 10 0 10 + [ 1 2 0 ] 11 0 11 + [ 1 2 1 ] 12 0 12 + [ 2 0 0 ] 13 0 13 + [ 2 0 1 ] 14 0 14 + [ 2 1 0 ] 15 0 15 + [ 2 1 1 ] 16 0 16 + [ 2 2 0 ] 17 0 17 + [ 2 2 1 ] 18 0 18 + [ 3 0 0 ] 19 0 19 + [ 3 0 1 ] 20 0 20 + [ 3 1 0 ] 21 0 21 + [ 3 1 1 ] 22 0 22 + [ 3 2 0 ] 23 0 23 + [ 3 2 1 ] 24 0 24 */ tid = H5Tcopy(H5T_STD_B8LE); - write_attr(loc_id,3,dims3,"bitfield3D",tid,buf23); + write_attr(loc_id, 3, dims3, "bitfield3D", tid, buf23); status = H5Tclose(tid); /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ - tid = H5Tcreate(H5T_OPAQUE, (size_t)1); + tid = H5Tcreate(H5T_OPAQUE, (size_t) 1); status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ - write_attr(loc_id,3,dims3,"opaque3D",tid,buf23); + write_attr(loc_id, 3, dims3, "opaque3D", tid, buf23); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6211,77 +6847,75 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { + n = 1; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) for (k = 0; k < 2; k++) { if (make_diffs) { buf33[i][j][k].a = 0; buf33[i][j][k].b = 0.0F; } else { - buf33[i][j][k].a = (char)n++; + buf33[i][j][k].a = (char) n++; buf33[i][j][k].b = n++; } } - } - } /*position compound3D of </g1> compound3D of </g1> difference - ------------------------------------------------------------ - [ 0 0 0 ] 1 0 1 - [ 0 0 0 ] 2 0 2 - [ 0 0 1 ] 3 0 3 - [ 0 0 1 ] 4 0 4 - [ 0 1 0 ] 5 0 5 - [ 0 1 0 ] 6 0 6 - [ 0 1 1 ] 7 0 7 - [ 0 1 1 ] 8 0 8 - [ 0 2 0 ] 9 0 9 - [ 0 2 0 ] 10 0 10 - [ 0 2 1 ] 11 0 11 - [ 0 2 1 ] 12 0 12 - [ 1 0 0 ] 13 0 13 - [ 1 0 0 ] 14 0 14 - [ 1 0 1 ] 15 0 15 - [ 1 0 1 ] 16 0 16 - [ 1 1 0 ] 17 0 17 - [ 1 1 0 ] 18 0 18 - [ 1 1 1 ] 19 0 19 - [ 1 1 1 ] 20 0 20 - [ 1 2 0 ] 21 0 21 - [ 1 2 0 ] 22 0 22 - [ 1 2 1 ] 23 0 23 - [ 1 2 1 ] 24 0 24 - [ 2 0 0 ] 25 0 25 - [ 2 0 0 ] 26 0 26 - [ 2 0 1 ] 27 0 27 - [ 2 0 1 ] 28 0 28 - [ 2 1 0 ] 29 0 29 - [ 2 1 0 ] 30 0 30 - [ 2 1 1 ] 31 0 31 - [ 2 1 1 ] 32 0 32 - [ 2 2 0 ] 33 0 33 - [ 2 2 0 ] 34 0 34 - [ 2 2 1 ] 35 0 35 - [ 2 2 1 ] 36 0 36 - [ 3 0 0 ] 37 0 37 - [ 3 0 0 ] 38 0 38 - [ 3 0 1 ] 39 0 39 - [ 3 0 1 ] 40 0 40 - [ 3 1 0 ] 41 0 41 - [ 3 1 0 ] 42 0 42 - [ 3 1 1 ] 43 0 43 - [ 3 1 1 ] 44 0 44 - [ 3 2 0 ] 45 0 45 - [ 3 2 0 ] 46 0 46 - [ 3 2 1 ] 47 0 47 - [ 3 2 1 ] 48 0 48 - */ - - tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 0 ] 2 0 2 + [ 0 0 1 ] 3 0 3 + [ 0 0 1 ] 4 0 4 + [ 0 1 0 ] 5 0 5 + [ 0 1 0 ] 6 0 6 + [ 0 1 1 ] 7 0 7 + [ 0 1 1 ] 8 0 8 + [ 0 2 0 ] 9 0 9 + [ 0 2 0 ] 10 0 10 + [ 0 2 1 ] 11 0 11 + [ 0 2 1 ] 12 0 12 + [ 1 0 0 ] 13 0 13 + [ 1 0 0 ] 14 0 14 + [ 1 0 1 ] 15 0 15 + [ 1 0 1 ] 16 0 16 + [ 1 1 0 ] 17 0 17 + [ 1 1 0 ] 18 0 18 + [ 1 1 1 ] 19 0 19 + [ 1 1 1 ] 20 0 20 + [ 1 2 0 ] 21 0 21 + [ 1 2 0 ] 22 0 22 + [ 1 2 1 ] 23 0 23 + [ 1 2 1 ] 24 0 24 + [ 2 0 0 ] 25 0 25 + [ 2 0 0 ] 26 0 26 + [ 2 0 1 ] 27 0 27 + [ 2 0 1 ] 28 0 28 + [ 2 1 0 ] 29 0 29 + [ 2 1 0 ] 30 0 30 + [ 2 1 1 ] 31 0 31 + [ 2 1 1 ] 32 0 32 + [ 2 2 0 ] 33 0 33 + [ 2 2 0 ] 34 0 34 + [ 2 2 1 ] 35 0 35 + [ 2 2 1 ] 36 0 36 + [ 3 0 0 ] 37 0 37 + [ 3 0 0 ] 38 0 38 + [ 3 0 1 ] 39 0 39 + [ 3 0 1 ] 40 0 40 + [ 3 1 0 ] 41 0 41 + [ 3 1 0 ] 42 0 42 + [ 3 1 1 ] 43 0 43 + [ 3 1 1 ] 44 0 44 + [ 3 2 0 ] 45 0 45 + [ 3 2 0 ] 46 0 46 + [ 3 2 1 ] 47 0 47 + [ 3 2 1 ] 48 0 48 + */ + + tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_attr(loc_id,3,dims3,"compound3D",tid,buf33); + write_attr(loc_id, 3, dims3, "compound3D", tid, buf33); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6289,15 +6923,13 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { + if (dset_name) { + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) for (k = 0; k < 2; k++) - status=H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,(hid_t)-1); - } - } - write_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43); + status = H5Rcreate(&buf43[i][j][k], fid, dset_name, + H5R_OBJECT, (hid_t) -1); + write_attr(loc_id, 3, dims3, "reference3D", H5T_STD_REF_OBJ, buf43); } /*------------------------------------------------------------------------- @@ -6305,48 +6937,47 @@ void write_attr_in(hid_t loc_id, *------------------------------------------------------------------------- */ - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) for (k = 0; k < 2; k++) { - if (make_diffs) buf453[i][j][k]=RED; else buf453[i][j][k]=GREEN; + if (make_diffs) + buf453[i][j][k] = RED; + else + buf453[i][j][k] = GREEN; } - } - } - /* - position enum3D of </g1> enum3D of </g1> difference - ------------------------------------------------------------ - [ 0 0 0 ] GREEN RED - [ 0 0 1 ] GREEN RED - [ 0 1 0 ] GREEN RED - [ 0 1 1 ] GREEN RED - [ 0 2 0 ] GREEN RED - [ 0 2 1 ] GREEN RED - [ 1 0 0 ] GREEN RED - [ 1 0 1 ] GREEN RED - [ 1 1 0 ] GREEN RED - [ 1 1 1 ] GREEN RED - [ 1 2 0 ] GREEN RED - [ 1 2 1 ] GREEN RED - [ 2 0 0 ] GREEN RED - [ 2 0 1 ] GREEN RED - [ 2 1 0 ] GREEN RED - [ 2 1 1 ] GREEN RED - [ 2 2 0 ] GREEN RED - [ 2 2 1 ] GREEN RED - [ 3 0 0 ] GREEN RED - [ 3 0 1 ] GREEN RED - [ 3 1 0 ] GREEN RED - [ 3 1 1 ] GREEN RED - [ 3 2 0 ] GREEN RED - [ 3 2 1 ] GREEN RED + position enum3D of </g1> enum3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] GREEN RED + [ 0 0 1 ] GREEN RED + [ 0 1 0 ] GREEN RED + [ 0 1 1 ] GREEN RED + [ 0 2 0 ] GREEN RED + [ 0 2 1 ] GREEN RED + [ 1 0 0 ] GREEN RED + [ 1 0 1 ] GREEN RED + [ 1 1 0 ] GREEN RED + [ 1 1 1 ] GREEN RED + [ 1 2 0 ] GREEN RED + [ 1 2 1 ] GREEN RED + [ 2 0 0 ] GREEN RED + [ 2 0 1 ] GREEN RED + [ 2 1 0 ] GREEN RED + [ 2 1 1 ] GREEN RED + [ 2 2 0 ] GREEN RED + [ 2 2 1 ] GREEN RED + [ 3 0 0 ] GREEN RED + [ 3 0 1 ] GREEN RED + [ 3 1 0 ] GREEN RED + [ 3 1 1 ] GREEN RED + [ 3 2 0 ] GREEN RED + [ 3 2 1 ] GREEN RED */ - tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); H5Tenum_insert(tid, "GREEN", (val = 1, &val)); - write_attr(loc_id,3,dims3,"enum3D",tid,buf453); + write_attr(loc_id, 3, dims3, "enum3D", tid, buf453); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6355,34 +6986,32 @@ void write_attr_in(hid_t loc_id, */ /* Allocate and initialize VL dataset to write */ - n=0; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { + n = 0; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) for (k = 0; k < 2; k++) { buf53[i][j][k].p = HDmalloc((size_t)(i + 1) * sizeof(int)); buf53[i][j][k].len = (size_t)(i + 1); for (l = 0; l < i + 1; l++) - if(make_diffs) - ((int *)buf53[i][j][k].p)[l] = 0; + if (make_diffs) + ((int *) buf53[i][j][k].p)[l] = 0; else - ((int *)buf53[i][j][k].p)[l] = n++; + ((int *) buf53[i][j][k].p)[l] = n++; } - } - } /* - position vlen3D of </g1> vlen3D of </g1> difference - ------------------------------------------------------------ - [ 0 0 1 ] 1 0 1 - [ 0 1 0 ] 2 0 2 - [ 0 1 1 ] 3 0 3 - [ 0 2 0 ] 4 0 4 - [ 0 2 1 ] 5 0 5 - [ 1 0 0 ] 6 0 6 - [ 1 0 0 ] 7 0 7 - [ 1 0 1 ] 8 0 8 - [ 1 0 1 ] 9 0 9 - [ 1 1 0 ] 10 0 10 - etc + position vlen3D of </g1> vlen3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 1 ] 1 0 1 + [ 0 1 0 ] 2 0 2 + [ 0 1 1 ] 3 0 3 + [ 0 2 0 ] 4 0 4 + [ 0 2 1 ] 5 0 5 + [ 1 0 0 ] 6 0 6 + [ 1 0 0 ] 7 0 7 + [ 1 0 1 ] 8 0 8 + [ 1 0 1 ] 9 0 9 + [ 1 1 0 ] 10 0 10 + etc */ sid = H5Screate_simple(3, dims3, NULL); tid = H5Tvlen_create(H5T_NATIVE_INT); @@ -6399,24 +7028,25 @@ void write_attr_in(hid_t loc_id, * H5T_ARRAY *------------------------------------------------------------------------- */ - n=1; - for (i = 0; i < 24; i++) { - for (j = 0; j < (int)dimarray[0]; j++) { - if (make_diffs) buf63[i][j]=0; - else buf63[i][j]=n++; + n = 1; + for (i = 0; i < 24; i++) + for (j = 0; j < (int) dimarray[0]; j++) { + if (make_diffs) + buf63[i][j] = 0; + else + buf63[i][j] = n++; } - } /* - position array3D of </g1> array3D of </g1> difference - ------------------------------------------------------------ - [ 0 0 0 ] 1 0 1 - [ 0 0 0 ] 2 0 2 - [ 0 0 0 ] 3 0 3 - [ 0 0 1 ] 4 0 4 - [ 0 0 1 ] 5 0 5 - [ 0 0 1 ] 6 0 6 - [ 0 1 0 ] 7 0 7 - etc + position array3D of </g1> array3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 0 ] 2 0 2 + [ 0 0 0 ] 3 0 3 + [ 0 0 1 ] 4 0 4 + [ 0 0 1 ] 5 0 5 + [ 0 0 1 ] 6 0 6 + [ 0 1 0 ] 7 0 7 + etc */ tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); @@ -6427,132 +7057,120 @@ void write_attr_in(hid_t loc_id, * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- */ - n=1; f=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { + n = 1; + f = 1; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) for (k = 0; k < 2; k++) { if (make_diffs) { - buf73[i][j][k]=0; - buf83[i][j][k]=0.0F; + buf73[i][j][k] = 0; + buf83[i][j][k] = 0.0F; } else { - buf73[i][j][k]=n++; - buf83[i][j][k]=f++; + buf73[i][j][k] = n++; + buf83[i][j][k] = f++; } } - } - } /* - position integer3D of </g1> integer3D of </g1> difference - ------------------------------------------------------------ - [ 0 0 0 ] 1 0 1 - [ 0 0 1 ] 2 0 2 - [ 0 1 0 ] 3 0 3 - [ 0 1 1 ] 4 0 4 - [ 0 2 0 ] 5 0 5 - [ 0 2 1 ] 6 0 6 - [ 1 0 0 ] 7 0 7 - [ 1 0 1 ] 8 0 8 - [ 1 1 0 ] 9 0 9 - [ 1 1 1 ] 10 0 10 - etc - */ - write_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73); - write_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83); + position integer3D of </g1> integer3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 1 ] 2 0 2 + [ 0 1 0 ] 3 0 3 + [ 0 1 1 ] 4 0 4 + [ 0 2 0 ] 5 0 5 + [ 0 2 1 ] 6 0 6 + [ 1 0 0 ] 7 0 7 + [ 1 0 1 ] 8 0 8 + [ 1 1 0 ] 9 0 9 + [ 1 1 1 ] 10 0 10 + etc + */ + write_attr(loc_id, 3, dims3, "integer3D", H5T_NATIVE_INT, buf73); + write_attr(loc_id, 3, dims3, "float3D", H5T_NATIVE_FLOAT, buf83); } - - /*------------------------------------------------------------------------- -* Function: write_dset_in -* -* Purpose: write datasets in LOC_ID -* -*------------------------------------------------------------------------- -*/ + * Function: write_dset_in + * + * Purpose: write datasets in LOC_ID + * + *------------------------------------------------------------------------- + */ static -void write_dset_in(hid_t loc_id, - const char* dset_name, /* for saving reference to dataset*/ - hid_t fid, - int make_diffs /* flag to modify data buffers */) +void write_dset_in(hid_t loc_id, const char* dset_name, hid_t fid, int make_diffs /* flag to modify data buffers */) { /* Compound datatype */ - typedef struct s_t - { - char a; + typedef struct s_t { + char a; double b; } s_t; - typedef enum - { - RED, - GREEN + typedef enum { + RED, GREEN } e_t; - hid_t did; - hid_t sid; - hid_t tid; - hid_t dcpl; - herr_t status; - int val, i, j, k, l, n; - float f; - int fillvalue=2; - int scalar_data = 2; + hid_t did = -1; + hid_t sid = -1; + hid_t tid = -1; + hid_t dcpl = -1; + herr_t status; + int val, i, j, k, l, n; + float f; + int fillvalue = 2; + int scalar_data = 2; /* create 1D attributes with dimension [2], 2 elements */ - hsize_t dims[1]={2}; - char buf1[2][STR_SIZE]= {"ab","de"}; /* string */ - char *buf1a[2]; /* VL string */ - char buf2[2]= {1,2}; /* bitfield, opaque */ - s_t buf3[2]= {{1,2.0F},{3,4.0F}}; /* compound */ - hobj_ref_t buf4[2]; /* reference */ - e_t buf45[2]= {RED,GREEN}; /* enum */ - hvl_t buf5[2]; /* vlen */ - hsize_t dimarray[1]={3}; /* array dimension */ - int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ - int buf7[2]= {1,2}; /* integer */ - float buf8[2]= {1.0F,2.0F}; /* float */ + hsize_t dims[1] = { 2 }; + char buf1[2][STR_SIZE] = { "ab", "de" }; /* string */ + char *buf1a[2]; /* VL string */ + char buf2[2] = { 1, 2 }; /* bitfield, opaque */ + s_t buf3[2] = { { 1, 2.0F }, { 3, 4.0F } }; /* compound */ + hobj_ref_t buf4[2]; /* reference */ + e_t buf45[2] = { RED, GREEN }; /* enum */ + hvl_t buf5[2]; /* vlen */ + hsize_t dimarray[1] = { 3 }; /* array dimension */ + int buf6[2][3] = { { 1, 2, 3 }, { 4, 5, 6 } }; /* array */ + int buf7[2] = { 1, 2 }; /* integer */ + float buf8[2] = { 1.0F, 2.0F }; /* float */ /* create 2D attributes with dimension [3][2], 6 elements */ - hsize_t dims2[2]={3,2}; - char buf12[3][2][STR_SIZE]= {{"ab","cd"},{"ef","gh"},{"ij","kl"}}; /* string */ - char *buf12a[3][2]; /* VL string */ - char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ - s_t buf32[6]= {{1,2.0F},{3,4.0F},{5,6.0F},{7,8.0F},{9,10.0F},{11,12.0F}}; /* compound */ - hobj_ref_t buf42[3][2]; /* reference */ - hvl_t buf52[3][2]; /* vlen */ - int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ - int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ - float buf82[3][2]= {{1.0F,2.0F},{3.0F,4.0F},{5.0F,6.0F}}; /* float */ + hsize_t dims2[2] = { 3, 2 }; + char buf12[3][2][STR_SIZE] = { { "ab", "cd" }, { "ef", "gh" }, { "ij", "kl" } }; /* string */ + char *buf12a[3][2]; /* VL string */ + char buf22[3][2] = { { 1, 2 }, { 3, 4 }, { 5, 6 } }; /* bitfield, opaque */ + s_t buf32[6] = { { 1, 2.0F }, { 3, 4.0F }, { 5, 6.0F }, { 7, 8.0F }, { 9, 10.0F }, { 11, 12.0F } }; /* compound */ + hobj_ref_t buf42[3][2]; /* reference */ + hvl_t buf52[3][2]; /* vlen */ + int buf62[6][3] = { { 1, 2, 3 }, { 4, 5, 6 }, { 7, 8, 9 }, { 10, 11, 12 }, { 13, 14, 15 }, { 16, 17, 18 } }; /* array */ + int buf72[3][2] = { { 1, 2 }, { 3, 4 }, { 5, 6 } }; /* integer */ + float buf82[3][2] = { { 1.0F, 2.0F }, { 3.0F, 4.0F }, { 5.0F, 6.0F } }; /* float */ /* create 3D attributes with dimension [4][3][2], 24 elements */ - hsize_t dims3[3]={4,3,2}; - char buf13[4][3][2][STR_SIZE]= {{{"ab","cd"},{"ef","gh"},{"ij","kl"}}, - {{"mn","pq"},{"rs","tu"},{"vw","xz"}}, - {{"AB","CD"},{"EF","GH"},{"IJ","KL"}}, - {{"MN","PQ"},{"RS","TU"},{"VW","XZ"}}}; /* string */ - char *buf13a[4][3][2]; /* VL string */ - char buf23[4][3][2]; /* bitfield, opaque */ - s_t buf33[4][3][2]; /* compound */ - hobj_ref_t buf43[4][3][2]; /* reference */ - hvl_t buf53[4][3][2]; /* vlen */ - int buf63[24][3]; /* array */ - int buf73[4][3][2]; /* integer */ - float buf83[4][3][2]; /* float */ - - if(make_diffs == 2) { + hsize_t dims3[3] = { 4, 3, 2 }; + char buf13[4][3][2][STR_SIZE] = { { { "ab", "cd" }, { "ef", "gh" }, { "ij", "kl" } }, + { { "mn", "pq" }, { "rs", "tu" }, { "vw", "xz" } }, + { { "AB", "CD" }, { "EF", "GH" }, { "IJ", "KL" } }, + { { "MN", "PQ" }, { "RS", "TU" }, { "VW", "XZ" } } }; /* string */ + char *buf13a[4][3][2]; /* VL string */ + char buf23[4][3][2]; /* bitfield, opaque */ + s_t buf33[4][3][2]; /* compound */ + hobj_ref_t buf43[4][3][2]; /* reference */ + hvl_t buf53[4][3][2]; /* vlen */ + int buf63[24][3]; /* array */ + int buf73[4][3][2]; /* integer */ + float buf83[4][3][2]; /* float */ + + if (make_diffs == 2) dimarray[0] = 4; - } /*------------------------------------------------------------------------- * H5S_SCALAR *------------------------------------------------------------------------- */ - - - if(make_diffs) + if (make_diffs) scalar_data = 1; /* create a space */ @@ -6568,7 +7186,6 @@ void write_dset_in(hid_t loc_id, H5Dclose(did); H5Sclose(sid); - /*------------------------------------------------------------------------- * 1D *------------------------------------------------------------------------- @@ -6579,27 +7196,22 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<2; j++) - buf1[i][j]='z'; - } - + for (i = 0; i < 2; i++) + for (j = 0; j < 2; j++) + buf1[i][j] = 'z'; tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid,(size_t)STR_SIZE); - write_dset(loc_id,1,dims,"string",tid,buf1); + status = H5Tset_size(tid, (size_t) STR_SIZE); + write_dset(loc_id, 1, dims, "string", tid, buf1); status = H5Tclose(tid); - for (i=0; i<2; i++) - { - buf1a[i]=buf1[i]; - } + for (i = 0; i < 2; i++) + buf1a[i] = buf1[i]; + tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid, H5T_VARIABLE); - write_dset(loc_id,1,dims,"VLstring",tid,buf1a); + status = H5Tset_size(tid, H5T_VARIABLE); + write_dset(loc_id, 1, dims, "VLstring", tid, buf1a); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6608,13 +7220,11 @@ void write_dset_in(hid_t loc_id, */ if (make_diffs) - { - for (i=0; i<2; i++) - buf2[i]=buf2[1]=0; - } + for (i = 0; i < 2; i++) + buf2[i] = buf2[1] = 0; tid = H5Tcopy(H5T_STD_B8LE); - write_dset(loc_id,1,dims,"bitfield",tid,buf2); + write_dset(loc_id, 1, dims, "bitfield", tid, buf2); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6623,16 +7233,14 @@ void write_dset_in(hid_t loc_id, */ if (make_diffs) - { - for (i=0; i<2; i++) - { - buf3[i].a=0; buf3[i].b=0; + for (i = 0; i < 2; i++) { + buf3[i].a = 0; + buf3[i].b = 0; } - } - tid = H5Tcreate(H5T_OPAQUE, (size_t)1); + tid = H5Tcreate(H5T_OPAQUE, (size_t) 1); status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ - write_dset(loc_id,1,dims,"opaque",tid,buf2); + write_dset(loc_id, 1, dims, "opaque", tid, buf2); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6640,19 +7248,14 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf45[i]=GREEN; - } - } + for (i = 0; i < 2; i++) + buf45[i] = GREEN; - tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_dset(loc_id,1,dims,"compound",tid,buf3); + write_dset(loc_id, 1, dims, "compound", tid, buf3); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6660,11 +7263,10 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ /* Create references to dataset */ - if (dset_name) - { - status=H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,(hid_t)-1); - status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,(hid_t)-1); - write_dset(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4); + if (dset_name) { + status = H5Rcreate(&buf4[0], fid, dset_name, H5R_OBJECT, (hid_t) -1); + status = H5Rcreate(&buf4[1], fid, dset_name, H5R_OBJECT, (hid_t) -1); + write_dset(loc_id, 1, dims, "reference", H5T_STD_REF_OBJ, buf4); } /*------------------------------------------------------------------------- @@ -6672,16 +7274,16 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - gen_datareg(fid,make_diffs); + gen_datareg(fid, make_diffs); /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); H5Tenum_insert(tid, "GREEN", (val = 1, &val)); - write_dset(loc_id,1,dims,"enum",tid,buf45); + write_dset(loc_id, 1, dims, "enum", tid, buf45); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6692,22 +7294,23 @@ void write_dset_in(hid_t loc_id, /* Allocate and initialize VL dataset to write */ buf5[0].len = 1; - buf5[0].p = HDmalloc( 1 * sizeof(int)); - ((int *)buf5[0].p)[0]=1; + buf5[0].p = HDmalloc(1 * sizeof(int)); + ((int *) buf5[0].p)[0] = 1; buf5[1].len = 2; - buf5[1].p = HDmalloc( 2 * sizeof(int)); - ((int *)buf5[1].p)[0]=2; - ((int *)buf5[1].p)[1]=3; + buf5[1].p = HDmalloc(2 * sizeof(int)); + ((int *) buf5[1].p)[0] = 2; + ((int *) buf5[1].p)[1] = 3; - if(make_diffs) { - ((int *)buf5[0].p)[0] = 0; - ((int *)buf5[1].p)[0] = 0; - ((int *)buf5[1].p)[1]=0; + if (make_diffs) { + ((int *) buf5[0].p)[0] = 0; + ((int *) buf5[1].p)[0] = 0; + ((int *) buf5[1].p)[1] = 0; } sid = H5Screate_simple(1, dims, NULL); tid = H5Tvlen_create(H5T_NATIVE_INT); - did = H5Dcreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + did = H5Dcreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT, + H5P_DEFAULT); status = H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf5); HDassert(status >= 0); status = H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5); @@ -6722,37 +7325,32 @@ void write_dset_in(hid_t loc_id, */ if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<3; j++) - { - buf6[i][j]=0; - } - } + for (i = 0; i < 2; i++) + for (j = 0; j < 3; j++) + buf6[i][j] = 0; tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_dset(loc_id, 1, dims, "array", tid, buf6); status = H5Tclose(tid); { - double *dbuf; /* information to write */ - hid_t ldid; /* dataset ID */ - hid_t lsid; /* dataspace ID */ - hid_t ltid; /* datatype ID */ - size_t size; - hsize_t sdims[] = {1}; - hsize_t tdims[] = {H5TOOLS_MALLOCSIZE / sizeof(double) + 1}; - size_t jj; + double *dbuf; /* information to write */ + hid_t ldid = -1; /* dataset ID */ + hid_t lsid = -1; /* dataspace ID */ + hid_t ltid = -1; /* datatype ID */ + size_t size; + hsize_t sdims[] = { 1 }; + hsize_t tdims[] = { H5TOOLS_MALLOCSIZE / sizeof(double) + 1 }; + size_t jj; /* allocate and initialize array data to write */ - size = ( H5TOOLS_MALLOCSIZE / sizeof(double) + 1 ) * sizeof(double); - dbuf = (double *)HDmalloc(size); + size = (H5TOOLS_MALLOCSIZE / sizeof(double) + 1) * sizeof(double); + dbuf = (double *) HDmalloc(size); - for(jj = 0; jj < (H5TOOLS_MALLOCSIZE / sizeof(double) + 1); jj++) - dbuf[jj] = (double)jj; + for (jj = 0; jj < (H5TOOLS_MALLOCSIZE / sizeof(double) + 1); jj++) + dbuf[jj] = (double) jj; - if (make_diffs) - { + if (make_diffs) { dbuf[5] = 0; dbuf[6] = 0; } @@ -6779,17 +7377,13 @@ void write_dset_in(hid_t loc_id, */ if (make_diffs) - { - for (i=0; i<2; i++) - { - buf7[i]=0; - buf8[i]=0; + for (i = 0; i < 2; i++) { + buf7[i] = 0; + buf8[i] = 0; } - } - - write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7); - write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8); + write_dset(loc_id, 1, dims, "integer", H5T_NATIVE_INT, buf7); + write_dset(loc_id, 1, dims, "float", H5T_NATIVE_FLOAT, buf8); /*------------------------------------------------------------------------- * 2D @@ -6801,30 +7395,25 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - if (make_diffs) - { - for (i=0; i<3; i++) - for (j=0; j<2; j++) - for (k=0; k<2; k++) - buf12[i][j][k]='z'; + if (make_diffs) { + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) + for (k = 0; k < 2; k++) + buf12[i][j][k] = 'z'; } - tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid,(size_t)STR_SIZE); - write_dset(loc_id,2,dims2,"string2D",tid,buf12); + status = H5Tset_size(tid, (size_t) STR_SIZE); + write_dset(loc_id, 2, dims2, "string2D", tid, buf12); status = H5Tclose(tid); - for (i=0; i<3; i++) - { - for (j=0; j<2; j++) - { - buf12a[i][j]=buf12[i][j]; - } - } + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) + buf12a[i][j] = buf12[i][j]; + tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid, H5T_VARIABLE); - write_dset(loc_id,2,dims2,"VLstring2D",tid,buf12a); + status = H5Tset_size(tid, H5T_VARIABLE); + write_dset(loc_id, 2, dims2, "VLstring2D", tid, buf12a); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6832,23 +7421,20 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - if (make_diffs) - { - memset(buf22,0,sizeof buf22); - } + memset(buf22, 0, sizeof buf22); tid = H5Tcopy(H5T_STD_B8LE); - write_dset(loc_id,2,dims2,"bitfield2D",tid,buf22); + write_dset(loc_id, 2, dims2, "bitfield2D", tid, buf22); status = H5Tclose(tid); /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ - tid = H5Tcreate(H5T_OPAQUE, (size_t)1); + tid = H5Tcreate(H5T_OPAQUE, (size_t) 1); status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ - write_dset(loc_id,2,dims2,"opaque2D",tid,buf22); + write_dset(loc_id, 2, dims2, "opaque2D", tid, buf22); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6857,14 +7443,12 @@ void write_dset_in(hid_t loc_id, */ if (make_diffs) - { - memset(buf32,0,sizeof buf32); - } + memset(buf32, 0, sizeof buf32); - tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_dset(loc_id,2,dims2,"compound2D",tid,buf32); + write_dset(loc_id, 2, dims2, "compound2D", tid, buf32); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6872,14 +7456,11 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 3; i++) { - for (j = 0; j < 2; j++) { - status=H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,(hid_t)-1); - } - } - write_dset(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42); + if (dset_name) { + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) + status = H5Rcreate(&buf42[i][j], fid, dset_name, H5R_OBJECT, (hid_t) -1); + write_dset(loc_id, 2, dims2, "reference2D", H5T_STD_REF_OBJ, buf42); } /*------------------------------------------------------------------------- @@ -6888,9 +7469,9 @@ void write_dset_in(hid_t loc_id, */ tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); H5Tenum_insert(tid, "GREEN", (val = 1, &val)); - write_dset(loc_id,2,dims2,"enum2D",tid,0); + write_dset(loc_id, 2, dims2, "enum2D", tid, 0); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -6900,18 +7481,17 @@ void write_dset_in(hid_t loc_id, /* Allocate and initialize VL dataset to write */ n = 0; - for(i = 0; i < 3; i++) { - for(j = 0; j < 2; j++) { + for (i = 0; i < 3; i++) + for (j = 0; j < 2; j++) { buf52[i][j].p = HDmalloc((size_t)(i + 1) * sizeof(int)); buf52[i][j].len = (size_t)(i + 1); - for(l = 0; l < i + 1; l++) { - if(make_diffs) - ((int *)buf52[i][j].p)[l] = 0; + for (l = 0; l < i + 1; l++) { + if (make_diffs) + ((int *) buf52[i][j].p)[l] = 0; else - ((int *)buf52[i][j].p)[l] = n++; + ((int *) buf52[i][j].p)[l] = n++; } } - } sid = H5Screate_simple(2, dims2, NULL); tid = H5Tvlen_create(H5T_NATIVE_INT); @@ -6930,10 +7510,7 @@ void write_dset_in(hid_t loc_id, */ if (make_diffs) - { - memset(buf62,0,sizeof buf62); - } - + memset(buf62, 0, sizeof buf62); tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_dset(loc_id, 2, dims2, "array2D", tid, buf62); @@ -6944,14 +7521,11 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - - if (make_diffs) - { + if (make_diffs) { memset(buf72, 0, sizeof buf72); memset(buf82, 0, sizeof buf82); } - dcpl = H5Pcreate(H5P_DATASET_CREATE); status = H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue); sid = H5Screate_simple(2, dims2, NULL); @@ -6966,8 +7540,7 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82); - + write_dset(loc_id, 2, dims2, "float2D", H5T_NATIVE_FLOAT, buf82); /*------------------------------------------------------------------------- * 3D @@ -6979,33 +7552,27 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - if (make_diffs) - { - for (i=0; i<4; i++) - for (j=0; j<3; j++) - for (k=0; k<2; k++) - for (l=0; l<2; l++) - buf13[i][j][k][l]='z'; + if (make_diffs) { + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) + for (l = 0; l < 2; l++) + buf13[i][j][k][l] = 'z'; } tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid,(size_t)STR_SIZE); - write_dset(loc_id,3,dims3,"string3D",tid,buf13); + status = H5Tset_size(tid, (size_t) STR_SIZE); + write_dset(loc_id, 3, dims3, "string3D", tid, buf13); status = H5Tclose(tid); - for (i=0; i<4; i++) - { - for (j=0; j<3; j++) - { - for (k=0; k<2; k++) - { - buf13a[i][j][k]=buf13[i][j][k]; - } - } - } + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) + buf13a[i][j][k] = buf13[i][j][k]; + tid = H5Tcopy(H5T_C_S1); - status = H5Tset_size(tid, H5T_VARIABLE); - write_dset(loc_id,3,dims3,"VLstring3D",tid,buf13a); + status = H5Tset_size(tid, H5T_VARIABLE); + write_dset(loc_id, 3, dims3, "VLstring3D", tid, buf13a); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -7013,31 +7580,27 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { + n = 1; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) for (k = 0; k < 2; k++) { - if(make_diffs) + if (make_diffs) buf23[i][j][k] = 0; else - buf23[i][j][k] = (char)n++; + buf23[i][j][k] = (char) n++; } - } - } - tid = H5Tcopy(H5T_STD_B8LE); - write_dset(loc_id,3,dims3,"bitfield3D",tid,buf23); + write_dset(loc_id, 3, dims3, "bitfield3D", tid, buf23); status = H5Tclose(tid); /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ - tid = H5Tcreate(H5T_OPAQUE, (size_t)1); + tid = H5Tcreate(H5T_OPAQUE, (size_t) 1); status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ - write_dset(loc_id,3,dims3,"opaque3D",tid,buf23); + write_dset(loc_id, 3, dims3, "opaque3D", tid, buf23); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -7045,27 +7608,24 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { + n = 1; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) for (k = 0; k < 2; k++) { if (make_diffs) { buf33[i][j][k].a = 0; buf33[i][j][k].b = 0.0F; } else { - buf33[i][j][k].a = (char)n++; + buf33[i][j][k].a = (char) n++; buf33[i][j][k].b = n++; } } - } - } - - tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_dset(loc_id,3,dims3,"compound3D",tid,buf33); + write_dset(loc_id, 3, dims3, "compound3D", tid, buf33); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -7073,15 +7633,12 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { + if (dset_name) { + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) for (k = 0; k < 2; k++) - status=H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,(hid_t)-1); - } - } - write_dset(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43); + status = H5Rcreate(&buf43[i][j][k], fid, dset_name, H5R_OBJECT, (hid_t) -1); + write_dset(loc_id, 3, dims3, "reference3D", H5T_STD_REF_OBJ, buf43); } /*------------------------------------------------------------------------- @@ -7090,9 +7647,9 @@ void write_dset_in(hid_t loc_id, */ tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); H5Tenum_insert(tid, "GREEN", (val = 1, &val)); - write_dset(loc_id,3,dims3,"enum3D",tid,0); + write_dset(loc_id, 3, dims3, "enum3D", tid, 0); status = H5Tclose(tid); /*------------------------------------------------------------------------- @@ -7101,21 +7658,19 @@ void write_dset_in(hid_t loc_id, */ /* Allocate and initialize VL dataset to write */ - n=0; - for(i = 0; i < 4; i++) { - for(j = 0; j < 3; j++) { - for(k = 0; k < 2; k++) { + n = 0; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) + for (k = 0; k < 2; k++) { buf53[i][j][k].p = HDmalloc((size_t)(i + 1) * sizeof(int)); buf53[i][j][k].len = (size_t)(i + 1); - for(l = 0; l < i + 1; l++) { - if(make_diffs) - ((int *)buf53[i][j][k].p)[l] = 0; + for (l = 0; l < i + 1; l++) { + if (make_diffs) + ((int *) buf53[i][j][k].p)[l] = 0; else - ((int *)buf53[i][j][k].p)[l] = n++; + ((int *) buf53[i][j][k].p)[l] = n++; } } - } - } sid = H5Screate_simple(3, dims3, NULL); tid = H5Tvlen_create(H5T_NATIVE_INT); @@ -7133,14 +7688,14 @@ void write_dset_in(hid_t loc_id, *------------------------------------------------------------------------- */ - - n=1; - for (i = 0; i < 24; i++) { + n = 1; + for (i = 0; i < 24; i++) for (j = 0; j < 3; j++) { - if (make_diffs) buf63[i][j]=0; - else buf63[i][j]=n++; + if (make_diffs) + buf63[i][j] = 0; + else + buf63[i][j] = n++; } - } tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_dset(loc_id, 3, dims3, "array3D", tid, buf63); @@ -7150,82 +7705,86 @@ void write_dset_in(hid_t loc_id, * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- */ - n=1; f=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { + n = 1; + f = 1; + for (i = 0; i < 4; i++) + for (j = 0; j < 3; j++) for (k = 0; k < 2; k++) { if (make_diffs) { - buf73[i][j][k]=0; - buf83[i][j][k]=0.0F; + buf73[i][j][k] = 0; + buf83[i][j][k] = 0.0F; } else { - buf73[i][j][k]=n++; - buf83[i][j][k]=f++; + buf73[i][j][k] = n++; + buf83[i][j][k] = f++; } } - } - } - write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73); - write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83); + + write_dset(loc_id, 3, dims3, "integer3D", H5T_NATIVE_INT, buf73); + write_dset(loc_id, 3, dims3, "float3D", H5T_NATIVE_FLOAT, buf83); } /*------------------------------------------------------------------------- -* Function: gen_datareg -* -* Purpose: generate a dataset region and its reference -* -* Date: April 19, 2006 -* -*------------------------------------------------------------------------- -*/ + * Function: gen_datareg + * + * Purpose: generate a dataset region and its reference + * + * Date: April 19, 2006 + * + *------------------------------------------------------------------------- + */ static -void gen_datareg(hid_t fid, - int make_diffs /* flag to modify data buffers */) +void gen_datareg(hid_t fid, int make_diffs /* flag to modify data buffers */) { /* data dataset */ - hid_t did1; /* dataset ID */ - hid_t sid1; /* dataspace ID */ - hsize_t dims1[2] = {10,10};/* dimensions */ - int *buf; /* dataset buffer */ + hid_t did1 = -1; /* dataset ID */ + hid_t sid1 = -1; /* dataspace ID */ + hsize_t dims1[2] = { 10, 10 };/* dimensions */ + int *buf; /* dataset buffer */ /* reference dataset */ - hid_t did2; /* dataset ID */ - hid_t sid2; /* dataspace ID */ - hsize_t dims2[] = {2}; /* 2 references */ - hdset_reg_ref_t *rbuf; /* buffer for write the references */ - hsize_t start[10]; /* starting location of hyperslab */ - hsize_t count[10]; /* element count of hyperslab */ - hsize_t coord[5][2]; /* coordinates for point selection */ - herr_t status; - int i; + hid_t did2 = -1; /* dataset ID */ + hid_t sid2 = -1; /* dataspace ID */ + hsize_t dims2[] = { 2 }; /* 2 references */ + hdset_reg_ref_t *rbuf; /* buffer for write the references */ + hsize_t start[10]; /* starting location of hyperslab */ + hsize_t count[10]; /* element count of hyperslab */ + hsize_t coord[5][2]; /* coordinates for point selection */ + herr_t status; + int i; /* allocate the buffer for write the references */ - rbuf = (hdset_reg_ref_t *)HDcalloc((size_t)2, sizeof(hdset_reg_ref_t)); + rbuf = (hdset_reg_ref_t *) HDcalloc((size_t )2, sizeof(hdset_reg_ref_t)); /* allocate the buffer for write the data dataset */ - buf = (int *)HDmalloc(10 * 10 * sizeof(int)); + buf = (int *) HDmalloc(10 * 10 * sizeof(int)); - for(i = 0; i < 10 * 10; i++) + for (i = 0; i < 10 * 10; i++) buf[i] = i; /* create the data dataset */ - sid1 = H5Screate_simple(2, dims1, NULL); - did1 = H5Dcreate2(fid, "dsetref", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + sid1 = H5Screate_simple(2, dims1, NULL); + did1 = H5Dcreate2(fid, "dsetref", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); HDassert(status >= 0); /* create the reference dataset */ - sid2 = H5Screate_simple(1, dims2, NULL); - did2 = H5Dcreate2(fid, "refreg", H5T_STD_REF_DSETREG, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + sid2 = H5Screate_simple(1, dims2, NULL); + did2 = H5Dcreate2(fid, "refreg", H5T_STD_REF_DSETREG, sid2, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); /* create the references */ /* select hyperslab for first reference */ - start[0] = 2; start[1] = 2; - count[0] = 6; count[1] = 6; - if(make_diffs) { - start[0] = 0; start[1] = 0; - count[0] = 3; count[1] = 3; + start[0] = 2; + start[1] = 2; + count[0] = 6; + count[1] = 6; + if (make_diffs) { + start[0] = 0; + start[1] = 0; + count[0] = 3; + count[1] = 3; } status = H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL); @@ -7237,25 +7796,32 @@ void gen_datareg(hid_t fid, HDassert(status >= 0); /* select sequence of five points for second reference */ - coord[0][0]=6; coord[0][1]=9; - coord[1][0]=2; coord[1][1]=2; - coord[2][0]=8; coord[2][1]=4; - coord[3][0]=1; coord[3][1]=6; - coord[4][0]=2; coord[4][1]=8; - if (make_diffs) - { - coord[1][0]=3; coord[1][1]=3; - coord[3][0]=2; coord[3][1]=5; - coord[4][0]=1; coord[4][1]=7; - } - H5Sselect_elements(sid1,H5S_SELECT_SET,(size_t)5,(const hsize_t *)coord); + coord[0][0] = 6; + coord[0][1] = 9; + coord[1][0] = 2; + coord[1][1] = 2; + coord[2][0] = 8; + coord[2][1] = 4; + coord[3][0] = 1; + coord[3][1] = 6; + coord[4][0] = 2; + coord[4][1] = 8; + if (make_diffs) { + coord[1][0] = 3; + coord[1][1] = 3; + coord[3][0] = 2; + coord[3][1] = 5; + coord[4][0] = 1; + coord[4][1] = 7; + } + H5Sselect_elements(sid1, H5S_SELECT_SET, (size_t) 5, (const hsize_t *) coord); H5Sget_select_npoints(sid1); /* store second dataset region */ - H5Rcreate(&rbuf[1],fid,"dsetref",H5R_DATASET_REGION,sid1); + H5Rcreate(&rbuf[1], fid, "dsetref", H5R_DATASET_REGION, sid1); /* write */ - status = H5Dwrite(did2,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,rbuf); + status = H5Dwrite(did2, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf); HDassert(status >= 0); /* close, free memory buffers */ @@ -7272,60 +7838,58 @@ void gen_datareg(hid_t fid, HDfree(buf); } - /*------------------------------------------------------------------------- -* Function: test_hyperslab -* -* Purpose: test diff by hyperslabs. create a dataset with 1GB dimensions -* by iterating trough 1KB hyperslabs -* -*------------------------------------------------------------------------- -*/ + * Function: test_hyperslab + * + * Purpose: test diff by hyperslabs. create a dataset with 1GB dimensions + * by iterating trough 1KB hyperslabs + * + *------------------------------------------------------------------------- + */ static -int test_hyperslab(const char *fname, - int make_diffs /* flag to modify data buffers */) +int test_hyperslab(const char *fname, int make_diffs /* flag to modify data buffers */) { - hid_t did=-1; - hid_t fid=-1; - hid_t f_sid=-1; - hid_t m_sid=-1; - hid_t tid=-1; - hid_t dcpl=-1; - hsize_t dims[1]={GBLL}; /* dataset dimensions */ - hsize_t hs_size[1]={GBLL/(1024*1024)}; /* hyperslab dimensions */ - hsize_t chunk_dims[1]={GBLL/1024}; /* chunk dimensions */ + hid_t did = -1; + hid_t fid = -1; + hid_t f_sid = -1; + hid_t m_sid = -1; + hid_t tid = -1; + hid_t dcpl = -1; + hsize_t dims[1] = { GBLL }; /* dataset dimensions */ + hsize_t hs_size[1] = { GBLL / (1024 * 1024) }; /* hyperslab dimensions */ + hsize_t chunk_dims[1] = { GBLL / 1024 }; /* chunk dimensions */ hsize_t hs_start[1]; - size_t size; - size_t nelmts=(size_t)GBLL/(1024*1024); /* elements in each hyperslab */ - char fillvalue=-1; - char *buf=NULL; - int i, j, s; - char c; + size_t size; + size_t nelmts = (size_t)GBLL / (1024 * 1024); /* elements in each hyperslab */ + char fillvalue = -1; + char *buf = NULL; + int i, j, s; + char c; /* create */ fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) goto out; - if(H5Pset_fill_value(dcpl, H5T_NATIVE_CHAR, &fillvalue) < 0) + if (H5Pset_fill_value(dcpl, H5T_NATIVE_CHAR, &fillvalue) < 0) goto out; - if(H5Pset_chunk(dcpl, 1, chunk_dims) < 0) + if (H5Pset_chunk(dcpl, 1, chunk_dims) < 0) goto out; - if((f_sid = H5Screate_simple(1, dims, NULL)) < 0) + if ((f_sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; - if((did = H5Dcreate2(fid, "big", H5T_NATIVE_CHAR, f_sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + if ((did = H5Dcreate2(fid, "big", H5T_NATIVE_CHAR, f_sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) goto out; - if((m_sid = H5Screate_simple(1, hs_size, hs_size)) < 0) + if ((m_sid = H5Screate_simple(1, hs_size, hs_size)) < 0) goto out; - if((tid = H5Dget_type(did)) < 0) + if ((tid = H5Dget_type(did)) < 0) goto out; - if((size = H5Tget_size(tid)) <= 0) + if ((size = H5Tget_size(tid)) <= 0) goto out; /* create a evenly divided buffer from 0 to 127 */ - buf = (char *)HDmalloc((size_t)(nelmts * size)); + buf = (char *) HDmalloc((size_t)(nelmts * size)); s = 1024 * 1024 / 127; - for(i = 0, j = 0, c = 0; i < 1024 * 1024; j++, i++) { - if(j == s) { + for (i = 0, j = 0, c = 0; i < 1024 * 1024; j++, i++) { + if (j == s) { c++; j = 0; } @@ -7334,32 +7898,30 @@ int test_hyperslab(const char *fname, HDmemset(buf, c, nelmts); /* make a different hyperslab at this position */ - if(make_diffs && i == 512 * 512) + if (make_diffs && i == 512 * 512) HDmemset(buf, 0, nelmts); - hs_start[0] = (unsigned long long)i * GBLL / (1024 * 1024); - if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL) < 0) + hs_start[0] = (unsigned long long) i * GBLL / (1024 * 1024); + if (H5Sselect_hyperslab(f_sid, H5S_SELECT_SET, hs_start, NULL, hs_size, NULL) < 0) goto out; /* write only one hyperslab */ - if ( i==512*512) - { - if (H5Dwrite (did,H5T_NATIVE_CHAR,m_sid,f_sid,H5P_DEFAULT,buf) < 0) + if (i == 512 * 512) { + if (H5Dwrite(did, H5T_NATIVE_CHAR, m_sid, f_sid, H5P_DEFAULT, buf) < 0) goto out; } - } HDfree(buf); - buf=NULL; + buf = NULL; /* close */ - if(H5Sclose(f_sid) < 0) + if (H5Sclose(f_sid) < 0) goto out; - if(H5Sclose(m_sid) < 0) + if (H5Sclose(m_sid) < 0) goto out; - if(H5Pclose(dcpl) < 0) + if (H5Pclose(dcpl) < 0) goto out; - if(H5Dclose(did) < 0) + if (H5Dclose(did) < 0) goto out; H5Fclose(fid); @@ -7374,40 +7936,32 @@ out: H5Fclose(fid); } H5E_END_TRY; return -1; - } - /*------------------------------------------------------------------------- -* Function: write_attr -* -* Purpose: utility function to write an attribute in LOC_ID -* -*------------------------------------------------------------------------- -*/ + * Function: write_attr + * + * Purpose: utility function to write an attribute in LOC_ID + * + *------------------------------------------------------------------------- + */ static -int write_attr(hid_t loc_id, - int rank, - hsize_t *dims, - const char *name, - hid_t tid, - void *buf) +int write_attr(hid_t loc_id, int rank, hsize_t *dims, const char *name, hid_t tid, void *buf) { - hid_t aid=-1; - hid_t sid=-1; + hid_t aid = -1; + hid_t sid = -1; /* create a space */ - if((sid = H5Screate_simple(rank, dims, NULL)) < 0) + if ((sid = H5Screate_simple(rank, dims, NULL)) < 0) goto out; /* create the attribute */ - if((aid = H5Acreate2(loc_id, name, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((aid = H5Acreate2(loc_id, name, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; /* write */ - if(buf) - { - if(H5Awrite(aid, tid, buf) < 0) + if (buf) { + if (H5Awrite(aid, tid, buf) < 0) goto out; } @@ -7425,35 +7979,29 @@ out: } /*------------------------------------------------------------------------- -* Function: write_dset -* -* Purpose: utility function to create and write a dataset in LOC_ID -* -*------------------------------------------------------------------------- -*/ + * Function: write_dset + * + * Purpose: utility function to create and write a dataset in LOC_ID + * + *------------------------------------------------------------------------- + */ static -int write_dset( hid_t loc_id, - int rank, - hsize_t *dims, - const char *name, - hid_t tid, - void *buf ) +int write_dset(hid_t loc_id, int rank, hsize_t *dims, const char *name, hid_t tid, void *buf) { - hid_t did=-1; - hid_t sid=-1; + hid_t did = -1; + hid_t sid = -1; /* create a space */ - if((sid = H5Screate_simple(rank, dims, NULL)) < 0) + if ((sid = H5Screate_simple(rank, dims, NULL)) < 0) goto out; /* create the dataset */ - if((did = H5Dcreate2(loc_id, name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((did = H5Dcreate2(loc_id, name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; /* write */ - if(buf) - { - if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + if (buf) { + if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) goto out; } diff --git a/tools/h5diff/testfiles/h5diff_8625.txt b/tools/h5diff/testfiles/h5diff_8625.txt new file mode 100644 index 0000000..a7ddb86 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_8625.txt @@ -0,0 +1,10 @@ +dataset: </group/Compound_dset1> and </group_copy/Compound_dset3> +Warning: different storage datatype +Warning: different storage datatype +Not comparable: </group/Compound_dset1> or </group_copy/Compound_dset3> is of mixed string type +0 differences found +-------------------------------- +Some objects are not comparable +-------------------------------- +Use -c for a list of objects without details of differences. +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_8639.txt b/tools/h5diff/testfiles/h5diff_8639.txt new file mode 100644 index 0000000..4022e06 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_8639.txt @@ -0,0 +1,72 @@ + +group1 group2 +--------------------------------------- + x x + +group : </g1> and </g1> +0 differences found +Warning: different storage datatype +Not comparable: <VLstring> or <VLstring> is of mixed string type +Warning: different storage datatype +Not comparable: <VLstring2D> or <VLstring2D> is of mixed string type +Warning: different storage datatype +Not comparable: <VLstring3D> or <VLstring3D> is of mixed string type +attribute: <array of </g1>> and <array of </g1>> +0 differences found +attribute: <array2D of </g1>> and <array2D of </g1>> +0 differences found +attribute: <array3D of </g1>> and <array3D of </g1>> +0 differences found +attribute: <bitfield of </g1>> and <bitfield of </g1>> +0 differences found +attribute: <bitfield2D of </g1>> and <bitfield2D of </g1>> +0 differences found +attribute: <bitfield3D of </g1>> and <bitfield3D of </g1>> +0 differences found +attribute: <compound of </g1>> and <compound of </g1>> +0 differences found +attribute: <compound2D of </g1>> and <compound2D of </g1>> +0 differences found +attribute: <compound3D of </g1>> and <compound3D of </g1>> +0 differences found +attribute: <enum of </g1>> and <enum of </g1>> +0 differences found +attribute: <enum2D of </g1>> and <enum2D of </g1>> +0 differences found +attribute: <enum3D of </g1>> and <enum3D of </g1>> +0 differences found +attribute: <float of </g1>> and <float of </g1>> +0 differences found +attribute: <float2D of </g1>> and <float2D of </g1>> +0 differences found +attribute: <float3D of </g1>> and <float3D of </g1>> +0 differences found +attribute: <integer of </g1>> and <integer of </g1>> +0 differences found +attribute: <integer2D of </g1>> and <integer2D of </g1>> +0 differences found +attribute: <integer3D of </g1>> and <integer3D of </g1>> +0 differences found +attribute: <opaque of </g1>> and <opaque of </g1>> +0 differences found +attribute: <opaque2D of </g1>> and <opaque2D of </g1>> +0 differences found +attribute: <opaque3D of </g1>> and <opaque3D of </g1>> +0 differences found +Warning: different storage datatype +Not comparable: <string> or <string> is of mixed string type +Warning: different storage datatype +Not comparable: <string2D> or <string2D> is of mixed string type +Warning: different storage datatype +Not comparable: <string3D> or <string3D> is of mixed string type +attribute: <vlen of </g1>> and <vlen of </g1>> +0 differences found +attribute: <vlen2D of </g1>> and <vlen2D of </g1>> +0 differences found +attribute: <vlen3D of </g1>> and <vlen3D of </g1>> +0 differences found +-------------------------------- +Some objects are not comparable +-------------------------------- +Use -c for a list of objects without details of differences. +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_attr1.h5 b/tools/h5diff/testfiles/h5diff_attr1.h5 Binary files differindex 5004f13..fc519d4 100644 --- a/tools/h5diff/testfiles/h5diff_attr1.h5 +++ b/tools/h5diff/testfiles/h5diff_attr1.h5 diff --git a/tools/h5diff/testfiles/h5diff_attr2.h5 b/tools/h5diff/testfiles/h5diff_attr2.h5 Binary files differindex 92a91c0..627d432 100644 --- a/tools/h5diff/testfiles/h5diff_attr2.h5 +++ b/tools/h5diff/testfiles/h5diff_attr2.h5 diff --git a/tools/h5diff/testfiles/h5diff_attr3.h5 b/tools/h5diff/testfiles/h5diff_attr3.h5 Binary files differnew file mode 100644 index 0000000..df2c664 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_attr3.h5 diff --git a/tools/h5diff/testfiles/h5diff_tmp1.txt b/tools/h5diff/testfiles/h5diff_tmp1.txt deleted file mode 100644 index 40e3fb6..0000000 --- a/tools/h5diff/testfiles/h5diff_tmp1.txt +++ /dev/null @@ -1,5 +0,0 @@ --------------------------------- -Some objects are not comparable --------------------------------- -Use -c for a list of objects. -EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_tmp2.txt b/tools/h5diff/testfiles/h5diff_tmp2.txt deleted file mode 100644 index a2d6da6..0000000 --- a/tools/h5diff/testfiles/h5diff_tmp2.txt +++ /dev/null @@ -1,13 +0,0 @@ -dataset: </G/down/Data> and </G/down/Data> -1599 differences found -dataset: </G/down/Tail/array> and </G/down/Tail/array> -8 differences found -dataset: </G/up/Data> and </G/up/Data> -1845 differences found -dataset: </G/up/Tail/array> and </G/up/Tail/array> -10 differences found --------------------------------- -Some objects are not comparable --------------------------------- -Use -c for a list of objects. -EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/tmpSingleSiteBethe.output.h5 b/tools/h5diff/testfiles/tmpSingleSiteBethe.output.h5 Binary files differdeleted file mode 100644 index bbcfb63..0000000 --- a/tools/h5diff/testfiles/tmpSingleSiteBethe.output.h5 +++ /dev/null diff --git a/tools/h5diff/testfiles/tmpSingleSiteBethe.reference.h5 b/tools/h5diff/testfiles/tmpSingleSiteBethe.reference.h5 Binary files differdeleted file mode 100644 index 6b19ed7..0000000 --- a/tools/h5diff/testfiles/tmpSingleSiteBethe.reference.h5 +++ /dev/null diff --git a/tools/h5diff/testfiles/tmptest.he5 b/tools/h5diff/testfiles/tmptest.he5 Binary files differdeleted file mode 100644 index edcfcd2..0000000 --- a/tools/h5diff/testfiles/tmptest.he5 +++ /dev/null diff --git a/tools/h5diff/testfiles/tmptest2.he5 b/tools/h5diff/testfiles/tmptest2.he5 Binary files differdeleted file mode 100644 index a6ab02b..0000000 --- a/tools/h5diff/testfiles/tmptest2.he5 +++ /dev/null diff --git a/tools/h5diff/testh5diff.sh.in b/tools/h5diff/testh5diff.sh.in index ff370a9..4563e39 100644 --- a/tools/h5diff/testh5diff.sh.in +++ b/tools/h5diff/testh5diff.sh.in @@ -82,6 +82,7 @@ $SRC_H5DIFF_TESTFILES/h5diff_types.h5 $SRC_H5DIFF_TESTFILES/h5diff_dtypes.h5 $SRC_H5DIFF_TESTFILES/h5diff_attr1.h5 $SRC_H5DIFF_TESTFILES/h5diff_attr2.h5 +$SRC_H5DIFF_TESTFILES/h5diff_attr3.h5 $SRC_H5DIFF_TESTFILES/h5diff_dset1.h5 $SRC_H5DIFF_TESTFILES/h5diff_dset2.h5 $SRC_H5DIFF_TESTFILES/h5diff_hyper1.h5 @@ -307,13 +308,9 @@ $SRC_H5DIFF_TESTFILES/h5diff_709.txt $SRC_H5DIFF_TESTFILES/h5diff_710.txt $SRC_H5DIFF_TESTFILES/h5diff_80.txt $SRC_H5DIFF_TESTFILES/h5diff_90.txt -$SRC_H5DIFF_TESTFILES/h5diff_tmp1.txt -$SRC_H5DIFF_TESTFILES/h5diff_tmp2.txt +$SRC_H5DIFF_TESTFILES/h5diff_8625.txt +$SRC_H5DIFF_TESTFILES/h5diff_8639.txt $SRC_H5DIFF_TESTFILES/h5diff_vlstr.txt -$SRC_H5DIFF_TESTFILES/tmptest.he5 -$SRC_H5DIFF_TESTFILES/tmptest2.he5 -$SRC_H5DIFF_TESTFILES/tmpSingleSiteBethe.reference.h5 -$SRC_H5DIFF_TESTFILES/tmpSingleSiteBethe.output.h5 " # @@ -776,10 +773,6 @@ TOOLTEST h5diff_631.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h # 7. attributes # ############################################################################## TOOLTEST h5diff_70.txt -v h5diff_attr1.h5 h5diff_attr2.h5 -# temporary test to verify HDF5-8625 -TOOLTEST h5diff_tmp1.txt tmptest2.he5 tmptest.he5 -# temporary test to verify HDF5-8639 -TOOLTEST h5diff_tmp2.txt tmpSingleSiteBethe.output.h5 tmpSingleSiteBethe.reference.h5 # ################################################## # attrs with verbose option level @@ -1101,6 +1094,10 @@ TOOLTEST h5diff_487.txt -v --exclude-path "/group1/dset" h5diff_exclude3-1.h5 h5 # # diff various multiple vlen and fixed strings in a compound type dataset # ############################################################################## TOOLTEST h5diff_530.txt -v h5diff_comp_vl_strs.h5 h5diff_comp_vl_strs.h5 /group /group_copy +# test to verify HDFFV-8625 +TOOLTEST h5diff_8625.txt -v --enable-error-stack h5diff_comp_vl_strs.h5 h5diff_comp_vl_strs.h5 /group/Compound_dset1 /group_copy/Compound_dset3 +# test to verify HDFFV-8639 +TOOLTEST h5diff_8639.txt -v h5diff_attr3.h5 h5diff_attr2.h5 /g1 TOOLTEST h5diff_vlstr.txt -v tvlstr.h5 tvlstr2.h5 # ############################################################################## diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt index 3a91e54..b384ce2 100644 --- a/tools/h5dump/CMakeLists.txt +++ b/tools/h5dump/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_H5DUMP) #----------------------------------------------------------------------------- @@ -14,7 +14,6 @@ add_executable (h5dump ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dump_ddl.c ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dump_xml.c ) -TARGET_NAMING (h5dump STATIC) TARGET_C_PROPERTIES (h5dump STATIC " " " ") target_link_libraries (h5dump ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5dump PROPERTIES FOLDER tools) @@ -28,7 +27,6 @@ if (BUILD_SHARED_LIBS) ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dump_ddl.c ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dump_xml.c ) - TARGET_NAMING (h5dump-shared SHARED) TARGET_C_PROPERTIES (h5dump-shared SHARED " " " ") target_link_libraries (h5dump-shared ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5dump-shared PROPERTIES FOLDER tools) @@ -51,7 +49,7 @@ if (BUILD_TESTING) add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_dump.c) TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED " " " ") target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) - H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED ${HDF5_PACKAGE_SOVERSION}) + H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") # make plugins dir file (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins") @@ -72,7 +70,6 @@ if (BUILD_TESTING) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5dumpgentest ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dumpgentest.c) - TARGET_NAMING (h5dumpgentest STATIC) TARGET_C_PROPERTIES (h5dumpgentest STATIC " " " ") target_link_libraries (h5dumpgentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5dumpgentest PROPERTIES FOLDER generator/tools) @@ -97,10 +94,9 @@ endif () # Rules for Installation of tools using make Install target #----------------------------------------------------------------------------- if (HDF5_EXPORTED_TARGETS) - if (BUILD_SHARED_LIBS) - INSTALL_PROGRAM_PDB (h5dump-shared ${HDF5_INSTALL_BIN_DIR} toolsapplications) - endif () - INSTALL_PROGRAM_PDB (h5dump ${HDF5_INSTALL_BIN_DIR} toolsapplications) + foreach (exec ${H5_DEP_EXECUTABLES}) + INSTALL_PROGRAM_PDB (${exec} ${HDF5_INSTALL_BIN_DIR} toolsapplications) + endforeach () install ( TARGETS diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in index a48e5ba..6b17ba3 100644 --- a/tools/h5dump/Makefile.in +++ b/tools/h5dump/Makefile.in @@ -733,6 +733,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1291,7 +1292,6 @@ help: @HAVE_SHARED_CONDITIONAL_TRUE@@NOT_UNAME_CYGWIN_TRUE@libdynlibdump.la: $(libdynlibdump_la_OBJECTS) $(libdynlibdump_la_DEPENDENCIES) $(EXTRA_libdynlibdump_la_DEPENDENCIES) @HAVE_SHARED_CONDITIONAL_TRUE@@NOT_UNAME_CYGWIN_TRUE@ $(AM_V_CCLD)$(libdynlibdump_la_LINK) $(am_libdynlibdump_la_rpath) $(libdynlibdump_la_OBJECTS) $(libdynlibdump_la_LIBADD) - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1379,28 +1379,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c index 80e653a..fa67548 100644 --- a/tools/h5dump/h5dump.c +++ b/tools/h5dump/h5dump.c @@ -67,7 +67,7 @@ struct handler_t { */ /* The following initialization makes use of C language cancatenating */ /* "xxx" "yyy" into "xxxyyy". */ -static const char *s_opts = "hn*peyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o*b*F:s:S:A*q:z:m:RECM:O*N:"; +static const char *s_opts = "hn*peyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o*b*F:s:S:A*q:z:m:RE*CM:O*N:"; static struct long_options l_opts[] = { { "help", no_arg, 'h' }, { "hel", no_arg, 'h' }, @@ -181,7 +181,7 @@ static struct long_options l_opts[] = { { "sort_order", require_arg, 'z' }, { "format", require_arg, 'm' }, { "region", no_arg, 'R' }, - { "enable-error-stack", no_arg, 'E' }, + { "enable-error-stack", optional_arg, 'E' }, { "packed-bits", require_arg, 'M' }, { "no-compact-subset", no_arg, 'C' }, { "ddl", optional_arg, 'O' }, @@ -269,8 +269,8 @@ usage(const char *prog) PRINTVALSTREAM(rawoutstream, " -m T, --format=T Set the floating point output format\n"); PRINTVALSTREAM(rawoutstream, " -q Q, --sort_by=Q Sort groups and attributes by index Q\n"); PRINTVALSTREAM(rawoutstream, " -z Z, --sort_order=Z Sort groups and attributes by order Z\n"); - PRINTVALSTREAM(rawoutstream, " --enable-error-stack Prints messages from the HDF5 error stack as they\n"); - PRINTVALSTREAM(rawoutstream, " occur.\n"); + PRINTVALSTREAM(rawoutstream, " --enable-error-stack Prints messages from the HDF5 error stack as they occur.\n"); + PRINTVALSTREAM(rawoutstream, " Optional value 2 also prints file open errors.\n"); PRINTVALSTREAM(rawoutstream, " --no-compact-subset Disable compact form of subsetting and allow the use\n"); PRINTVALSTREAM(rawoutstream, " of \"[\" in dataset names.\n"); PRINTVALSTREAM(rawoutstream, " -w N, --width=N Set the number of columns of output. A value of 0 (zero)\n"); @@ -916,9 +916,8 @@ parse_start: case 'n': display_fi = TRUE; last_was_dset = FALSE; - if ( opt_arg != NULL) { + if (opt_arg != NULL) h5trav_set_verbose(HDatoi(opt_arg)); - } break; case 'p': display_dcpl = TRUE; @@ -935,8 +934,9 @@ parse_start: last_was_dset = FALSE; break; case 'A': - if ( opt_arg != NULL) { - if(0 == HDatoi(opt_arg)) include_attrs = FALSE; + if (opt_arg != NULL) { + if(0 == HDatoi(opt_arg)) + include_attrs = FALSE; } else { display_data = FALSE; @@ -1055,7 +1055,7 @@ parse_start: break; case 'o': - if ( bin_output ) { + if (bin_output) { if (h5tools_set_data_output_file(opt_arg, 1) < 0) { usage(h5tools_getprogname()); goto error; @@ -1082,8 +1082,8 @@ parse_start: break; case 'b': - if ( opt_arg != NULL) { - if ( ( bin_form = set_binary_form(opt_arg)) < 0) { + if (opt_arg != NULL) { + if ((bin_form = set_binary_form(opt_arg)) < 0) { /* failed to set binary form */ usage(h5tools_getprogname()); goto error; @@ -1102,7 +1102,7 @@ parse_start: break; case 'q': - if ( ( sort_by = set_sort_by(opt_arg)) < 0) { + if ((sort_by = set_sort_by(opt_arg)) < 0) { /* failed to set "sort by" form */ usage(h5tools_getprogname()); goto error; @@ -1110,7 +1110,7 @@ parse_start: break; case 'z': - if ( ( sort_order = set_sort_order(opt_arg)) < 0) { + if ((sort_order = set_sort_order(opt_arg)) < 0) { /* failed to set "sort order" form */ usage(h5tools_getprogname()); goto error; @@ -1254,7 +1254,10 @@ end_collect: /** end subsetting parameters **/ case 'E': - enable_error_stack = TRUE; + if (opt_arg != NULL) + enable_error_stack = HDatoi(opt_arg); + else + enable_error_stack = 1; break; case 'C': disable_compact_subset = TRUE; @@ -1374,7 +1377,7 @@ main(int argc, const char *argv[]) goto done; } - if (enable_error_stack) { + if (enable_error_stack > 0) { H5Eset_auto2(H5E_DEFAULT, func, edata); H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); } diff --git a/tools/h5dump/h5dump_ddl.c b/tools/h5dump/h5dump_ddl.c index 8dc96ce..7c0a05b 100644 --- a/tools/h5dump/h5dump_ddl.c +++ b/tools/h5dump/h5dump_ddl.c @@ -277,7 +277,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -289,7 +288,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -311,7 +309,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR } else if(found_obj->displayed) { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -332,7 +329,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -414,7 +410,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR /* print the value of a soft link */ /* Standard DDL: no modification */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -425,7 +420,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -450,7 +444,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR } else { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -479,7 +472,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -487,7 +479,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -500,7 +491,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR } /* end else */ } /* end else */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -522,7 +512,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR case H5L_TYPE_HARD: default: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -534,7 +523,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "LINKCLASS %d", linfo->type); @@ -543,7 +531,6 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); if(HDstrlen(h5tools_dump_header_format->udlinkblockend)) { @@ -904,7 +891,6 @@ dump_group(hid_t gid, const char *name) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1571,7 +1557,6 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H HDmemset(&buffer, 0, sizeof(h5tools_str_t)); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1583,7 +1568,6 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H error_msg("unable to open object \"%s\"\n", obj_name); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); if(HDstrlen(h5tools_dump_header_format->attributeblockend)) { diff --git a/tools/h5dump/h5dump_xml.c b/tools/h5dump/h5dump_xml.c index 76819f0..6e72b56 100644 --- a/tools/h5dump/h5dump_xml.c +++ b/tools/h5dump/h5dump_xml.c @@ -230,7 +230,6 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -242,7 +241,6 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -277,7 +275,6 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ xml_name_to_XID(prefix, parentxid, (int)sizeof(parentxid), 1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -297,7 +294,6 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -309,7 +305,6 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -404,7 +399,6 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ if (res == 0) { /* target obj found */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -426,7 +420,6 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ else { /* dangling link -- omit from xml attributes */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -491,7 +484,6 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ xml_name_to_XID(prefix, parentxid, (int)sizeof(parentxid), 1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -538,7 +530,6 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ xml_name_to_XID(prefix, parentxid, (int)sizeof(parentxid), 1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -904,7 +895,6 @@ xml_print_datatype(hid_t type, unsigned in_group) as it's name. */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -917,7 +907,6 @@ xml_print_datatype(hid_t type, unsigned in_group) char *t_objname = xml_escape_the_name(found_obj->objname); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -930,7 +919,6 @@ xml_print_datatype(hid_t type, unsigned in_group) } else { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -943,7 +931,6 @@ xml_print_datatype(hid_t type, unsigned in_group) switch (H5Tget_class(type)) { case H5T_INTEGER: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -956,7 +943,6 @@ xml_print_datatype(hid_t type, unsigned in_group) sgn = H5Tget_sign(type); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1001,7 +987,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1017,7 +1002,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ord = H5Tget_order(type); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1026,7 +1010,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1060,7 +1043,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1070,7 +1052,6 @@ xml_print_datatype(hid_t type, unsigned in_group) case H5T_TIME: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1079,7 +1060,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1089,7 +1069,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1105,7 +1084,6 @@ xml_print_datatype(hid_t type, unsigned in_group) is_vlstr = H5Tis_variable_str(type); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1115,7 +1093,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1143,7 +1120,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1156,7 +1132,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ord = H5Tget_order(type); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1165,7 +1140,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1192,7 +1166,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1204,7 +1177,6 @@ xml_print_datatype(hid_t type, unsigned in_group) /* <hdf5:OpaqueType Tag="tag" Size="bytes" /> */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1214,7 +1186,6 @@ xml_print_datatype(hid_t type, unsigned in_group) mname = H5Tget_tag(type); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1226,7 +1197,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1241,7 +1211,6 @@ xml_print_datatype(hid_t type, unsigned in_group) nmembers = (unsigned)H5Tget_nmembers(type); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1261,7 +1230,6 @@ xml_print_datatype(hid_t type, unsigned in_group) t_fname = xml_escape_the_name(mname); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1274,7 +1242,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1287,7 +1254,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1297,7 +1263,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1308,7 +1273,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1318,7 +1282,6 @@ xml_print_datatype(hid_t type, unsigned in_group) case H5T_REFERENCE: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1328,7 +1291,6 @@ xml_print_datatype(hid_t type, unsigned in_group) /* Only Object references supported at this time */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1337,7 +1299,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1346,7 +1307,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1355,7 +1315,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1368,7 +1327,6 @@ xml_print_datatype(hid_t type, unsigned in_group) nmembs = H5Tget_nmembers(type); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1378,7 +1336,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1387,7 +1344,6 @@ xml_print_datatype(hid_t type, unsigned in_group) xml_print_enum(type); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1397,7 +1353,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1407,7 +1362,6 @@ xml_print_datatype(hid_t type, unsigned in_group) case H5T_VLEN: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1418,7 +1372,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1431,7 +1384,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1441,7 +1393,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1473,7 +1424,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level++; for (i = 0; i < ndims; i++) { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1486,7 +1436,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1499,7 +1448,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1509,7 +1457,6 @@ xml_print_datatype(hid_t type, unsigned in_group) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1523,7 +1470,6 @@ xml_print_datatype(hid_t type, unsigned in_group) case H5T_NCLASSES: default: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1605,7 +1551,6 @@ xml_dump_datatype(hid_t type) */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1618,7 +1563,6 @@ xml_dump_datatype(hid_t type) char *t_objname = xml_escape_the_name(found_obj->objname); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1631,7 +1575,6 @@ xml_dump_datatype(hid_t type) } else { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1641,7 +1584,6 @@ xml_dump_datatype(hid_t type) } else { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1654,7 +1596,6 @@ xml_dump_datatype(hid_t type) dump_indent -= COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1719,7 +1660,6 @@ xml_dump_dataspace(hid_t space) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1732,7 +1672,6 @@ xml_dump_dataspace(hid_t space) /* scalar dataspace (just a tag, no XML attrs. defined */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1745,7 +1684,6 @@ xml_dump_dataspace(hid_t space) /* <hdf5:SimpleDataspace Ndims="nd"> */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1757,7 +1695,6 @@ xml_dump_dataspace(hid_t space) for (i = 0; i < ndims; i++) { if (maxsize[i] == H5S_UNLIMITED) { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1767,7 +1704,6 @@ xml_dump_dataspace(hid_t space) } else if (maxsize[i] == (hsize_t) 0) { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1777,7 +1713,6 @@ xml_dump_dataspace(hid_t space) } else { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1789,7 +1724,6 @@ xml_dump_dataspace(hid_t space) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1804,7 +1738,6 @@ xml_dump_dataspace(hid_t space) ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); - /* Render the element */ h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "<%sNullDataspace />",xmlnsprefix); @@ -1816,7 +1749,6 @@ xml_dump_dataspace(hid_t space) case H5S_NO_CLASS: default: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1827,7 +1759,6 @@ xml_dump_dataspace(hid_t space) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1898,7 +1829,6 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset, outputformat = &string_dataformat; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -1908,7 +1838,6 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset, ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2004,7 +1933,6 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset, ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2030,7 +1958,6 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset, ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2091,7 +2018,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED outputformat = &string_dataformat; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2127,7 +2053,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED dump_indent += COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2135,7 +2060,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2143,7 +2067,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2151,7 +2074,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2159,7 +2081,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2172,7 +2093,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED case H5T_COMPOUND: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2183,7 +2103,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED case H5T_REFERENCE: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2191,7 +2110,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); if (!H5Tequal(type, H5T_STD_REF_OBJ)) { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2199,7 +2117,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2208,7 +2125,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED } else { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2218,7 +2134,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED xml_print_refs(attr_id, ATTRIBUTE_DATA); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2227,7 +2142,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED } ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2237,7 +2151,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED case H5T_VLEN: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2250,7 +2163,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED case H5T_NCLASSES: default: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2258,7 +2170,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2266,7 +2177,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2274,7 +2184,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2287,7 +2196,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED /* The case of an attribute never yet written ?? * Or dataspace is H5S_NULL. */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2297,7 +2205,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2307,7 +2214,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2322,7 +2228,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED H5Aclose(attr_id); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2337,7 +2242,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2347,7 +2251,6 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2434,7 +2337,6 @@ xml_dump_named_datatype(hid_t type, const char *name) */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2449,7 +2351,6 @@ xml_dump_named_datatype(hid_t type, const char *name) H5O_info_t oinfo; /* Object info */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2486,7 +2387,6 @@ xml_dump_named_datatype(hid_t type, const char *name) xml_name_to_XID(found_obj->objname, pointerxid, (int)sizeof(pointerxid), 1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2496,7 +2396,6 @@ xml_dump_named_datatype(hid_t type, const char *name) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2514,7 +2413,6 @@ xml_dump_named_datatype(hid_t type, const char *name) dump_indent += COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2528,7 +2426,6 @@ xml_dump_named_datatype(hid_t type, const char *name) dump_indent -= COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2539,7 +2436,6 @@ xml_dump_named_datatype(hid_t type, const char *name) dump_indent -= COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2679,7 +2575,6 @@ xml_dump_group(hid_t gid, const char *name) xml_name_to_XID("/", grpxid, 100, 1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2694,7 +2589,6 @@ xml_dump_group(hid_t gid, const char *name) xml_name_to_XID(par, parentxid, 100, 1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2714,7 +2608,6 @@ xml_dump_group(hid_t gid, const char *name) xml_name_to_XID(par, parentxid, 100, 1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2738,7 +2631,6 @@ xml_dump_group(hid_t gid, const char *name) xml_name_to_XID("/", grpxid, 100, 1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2754,7 +2646,6 @@ xml_dump_group(hid_t gid, const char *name) xml_name_to_XID(par, parentxid, 100, 1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2824,7 +2715,6 @@ xml_dump_group(hid_t gid, const char *name) char *parentxid = (char *)HDmalloc((size_t)100); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -2897,7 +2787,6 @@ xml_dump_group(hid_t gid, const char *name) } ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3024,7 +2913,6 @@ xml_print_refs(hid_t did, int source) if (!path) { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3035,7 +2923,6 @@ xml_print_refs(hid_t did, int source) char *t_path = xml_escape_the_string(path, -1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3181,7 +3068,6 @@ xml_print_strs(hid_t did, int source) if (!onestring) { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3289,7 +3175,6 @@ check_filters(hid_t dcpl) if (filter == H5Z_FILTER_DEFLATE) { ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3308,7 +3193,6 @@ check_filters(hid_t dcpl) else if (filter == H5Z_FILTER_FLETCHER32) { ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3319,7 +3203,6 @@ check_filters(hid_t dcpl) else if (filter == H5Z_FILTER_SHUFFLE) { ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3331,7 +3214,6 @@ check_filters(hid_t dcpl) ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3425,7 +3307,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) dump_indent += COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3443,7 +3324,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) const char * path = lookup_ref_path(*(hobj_ref_t *) buf); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3451,7 +3331,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); if (!path) { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3462,7 +3341,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) char *t_path = xml_escape_the_string(path, -1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3472,7 +3350,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) } ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3482,7 +3359,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) else if (H5Tget_class(type) == H5T_STRING) { /* ????? */ ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3490,7 +3366,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3502,7 +3377,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) switch (H5Tget_class(type)) { case H5T_INTEGER: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3518,7 +3392,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3527,7 +3400,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) break; case H5T_FLOAT: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3543,7 +3415,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3553,7 +3424,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) case H5T_BITFIELD: case H5T_OPAQUE: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3575,7 +3445,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3584,7 +3453,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) break; case H5T_ENUM: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3602,7 +3470,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) if(name) H5free_memory(name); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3611,7 +3478,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) break; case H5T_ARRAY: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3619,7 +3485,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3628,7 +3493,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) break; case H5T_TIME: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3636,7 +3500,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3645,7 +3508,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) break; case H5T_COMPOUND: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3653,7 +3515,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3662,7 +3523,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) break; case H5T_VLEN: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3670,7 +3530,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3683,7 +3542,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) case H5T_REFERENCE: default: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3691,7 +3549,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3705,7 +3562,6 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) dump_indent -= COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3792,7 +3648,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s xml_name_to_XID(prefix, pstr, 100, 1); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3827,7 +3682,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s dump_indent += COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3837,7 +3691,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s dump_indent += COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3852,7 +3705,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s for (i = 0; i < ndims; i++) { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3861,7 +3713,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s } ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3875,7 +3726,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s dump_indent -= COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3886,7 +3736,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s dump_indent -= COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3896,7 +3745,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s dump_indent -= COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3911,7 +3759,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3920,7 +3767,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3929,7 +3775,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3941,7 +3786,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3950,7 +3794,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3959,7 +3802,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -3975,7 +3817,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s dump_indent += COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4024,7 +3865,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s dump_indent += COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4036,7 +3876,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4049,7 +3888,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s } ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4060,7 +3898,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s dump_indent -= COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4113,7 +3950,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4121,7 +3957,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4129,7 +3964,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4137,7 +3971,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4149,7 +3982,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s case H5T_COMPOUND: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4165,7 +3997,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s case H5T_REFERENCE: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4173,7 +4004,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); if (!H5Tequal(type, H5T_STD_REF_OBJ)) { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4181,7 +4011,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4190,7 +4019,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s } else { ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4200,7 +4028,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s xml_print_refs(did, DATASET_DATA); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4209,7 +4036,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s } ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4221,7 +4047,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level--; dump_indent -= COL; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4240,7 +4065,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s case H5T_NCLASSES: default: ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4248,7 +4072,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4256,7 +4079,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4264,7 +4086,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4278,7 +4099,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4287,7 +4107,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level++; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4296,7 +4115,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4310,7 +4128,6 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s H5Pclose(dcpl); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4376,7 +4193,6 @@ xml_print_enum(hid_t type) super = H5Tget_super(type); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4386,7 +4202,6 @@ xml_print_enum(hid_t type) xml_print_datatype(super,0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4437,7 +4252,6 @@ xml_print_enum(hid_t type) char *t_name = xml_escape_the_name(name[i]); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4455,7 +4269,6 @@ xml_print_enum(hid_t type) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4463,7 +4276,6 @@ xml_print_enum(hid_t type) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); @@ -4493,7 +4305,6 @@ xml_print_enum(hid_t type) ctx.indent_level--; ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ h5tools_str_reset(&buffer); diff --git a/tools/h5import/CMakeLists.txt b/tools/h5import/CMakeLists.txt index 4831d5c..095b596 100644 --- a/tools/h5import/CMakeLists.txt +++ b/tools/h5import/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_H5IMPORT) #----------------------------------------------------------------------------- @@ -10,7 +10,6 @@ INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib) # Add the h5import executables # -------------------------------------------------------------------- add_executable (h5import ${HDF5_TOOLS_H5IMPORT_SOURCE_DIR}/h5import.c) -TARGET_NAMING (h5import STATIC) TARGET_C_PROPERTIES (h5import STATIC " " " ") target_link_libraries (h5import ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) #set_target_properties (h5import PROPERTIES COMPILE_DEFINITIONS H5DEBUGIMPORT) @@ -24,7 +23,6 @@ if (BUILD_TESTING) # Add the h5import executables # -------------------------------------------------------------------- add_executable (h5importtest ${HDF5_TOOLS_H5IMPORT_SOURCE_DIR}/h5importtest.c) - TARGET_NAMING (h5importtest STATIC) TARGET_C_PROPERTIES (h5importtest STATIC " " " ") target_link_libraries (h5importtest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5importtest PROPERTIES FOLDER tools) @@ -43,11 +41,13 @@ endif () # Rules for Installation of tools using make Install target #----------------------------------------------------------------------------- if (HDF5_EXPORTED_TARGETS) - INSTALL_PROGRAM_PDB (h5import ${HDF5_INSTALL_BIN_DIR} toolsapplications) + foreach (exec ${H5_DEP_EXECUTABLES}) + INSTALL_PROGRAM_PDB (${exec} ${HDF5_INSTALL_BIN_DIR} toolsapplications) + endforeach () install ( TARGETS - h5import + ${H5_DEP_EXECUTABLES} EXPORT ${HDF5_EXPORTED_TARGETS} RUNTIME DESTINATION ${HDF5_INSTALL_BIN_DIR} COMPONENT toolsapplications diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in index fa4dceb..186562e 100644 --- a/tools/h5import/Makefile.in +++ b/tools/h5import/Makefile.in @@ -704,6 +704,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1225,7 +1226,6 @@ uninstall-am: uninstall-binPROGRAMS help: @$(top_srcdir)/bin/makehelp - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1313,28 +1313,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/h5import/h5import.c b/tools/h5import/h5import.c index 36a8c21..76e78af 100644 --- a/tools/h5import/h5import.c +++ b/tools/h5import/h5import.c @@ -1405,7 +1405,7 @@ static int processConfigurationFile(char *infile, struct Input *in) const char *err14a = "COMPRESSION-PARAM keyword appears twice in %s.\n"; const char *err14b = "Error in retrieving the compression parameter from %s.\n"; const char *err15a = "EXTERNAL-STORAGE keyword appears twice in %s.\n"; - const char *err15b = "Error in retrieving the external storage paramters from %s.\n"; + const char *err15b = "Error in retrieving the external storage parameters from %s.\n"; const char *err16a = "MAXIMUM-DIMENSIONS keyword appears twice in %s.\n"; const char *err16b = "MAXIMUM-DIMENSIONS cannot appear before DIMENSION-SIZES are provided.\n"; const char *err16c = "Error in retrieving the maximum dimension sizes from %s.\n"; @@ -3690,7 +3690,7 @@ static int getCompressionParameter(struct Input *in, FILE *strm) { /* currently supports only GZIP */ /* can be extended by adding more values to COMPRESSION-TYPE and */ - /* handling the paramters here by adding more cases */ + /* handling the parameters here by adding more cases */ int ival; const char *err1 = "Unable to get integer value.\n"; diff --git a/tools/h5jam/CMakeLists.txt b/tools/h5jam/CMakeLists.txt index 927a64c..eaa6e20 100644 --- a/tools/h5jam/CMakeLists.txt +++ b/tools/h5jam/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_H5JAM) #----------------------------------------------------------------------------- @@ -10,26 +10,22 @@ INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib) # Add the h5jam executables # -------------------------------------------------------------------- add_executable (h5jam ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/h5jam.c) -TARGET_NAMING (h5jam STATIC) TARGET_C_PROPERTIES (h5jam STATIC " " " ") target_link_libraries (h5jam ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5jam PROPERTIES FOLDER tools) set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5jam") add_executable (getub ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/getub.c) -TARGET_NAMING (getub STATIC) TARGET_C_PROPERTIES (getub STATIC " " " ") target_link_libraries (getub ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (getub PROPERTIES FOLDER tools) add_executable (tellub ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/tellub.c) -TARGET_NAMING (tellub STATIC) TARGET_C_PROPERTIES (tellub STATIC " " " ") target_link_libraries (tellub ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (tellub PROPERTIES FOLDER tools) add_executable (h5unjam ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/h5unjam.c) -TARGET_NAMING (h5unjam STATIC) TARGET_C_PROPERTIES (h5unjam STATIC " " " ") target_link_libraries (h5unjam ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5unjam PROPERTIES FOLDER tools) @@ -37,8 +33,6 @@ set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5unjam") set (H5_DEP_EXECUTABLES h5jam - getub - tellub h5unjam ) @@ -48,7 +42,6 @@ if (BUILD_TESTING) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5jamgentest ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/h5jamgentest.c) - TARGET_NAMING (h5jamgentest STATIC) TARGET_C_PROPERTIES (testhdf5 STATIC " " " ") target_link_libraries (h5jamgentest ${HDF5_LIB_TARGET}) set_target_properties (h5jamgentest PROPERTIES FOLDER generator/tools) @@ -70,11 +63,13 @@ endif () # Rules for Installation of tools using make Install target #----------------------------------------------------------------------------- if (HDF5_EXPORTED_TARGETS) - INSTALL_PROGRAM_PDB (h5jam ${HDF5_INSTALL_BIN_DIR} toolsapplications) + foreach (exec ${H5_DEP_EXECUTABLES}) + INSTALL_PROGRAM_PDB (${exec} ${HDF5_INSTALL_BIN_DIR} toolsapplications) + endforeach () install ( TARGETS - h5jam h5unjam + ${H5_DEP_EXECUTABLES} EXPORT ${HDF5_EXPORTED_TARGETS} RUNTIME DESTINATION ${HDF5_INSTALL_BIN_DIR} COMPONENT toolsapplications diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in index 0939991..133b1bd 100644 --- a/tools/h5jam/Makefile.in +++ b/tools/h5jam/Makefile.in @@ -716,6 +716,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1246,7 +1247,6 @@ uninstall-am: uninstall-binPROGRAMS help: @$(top_srcdir)/bin/makehelp - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1334,28 +1334,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/h5jam/h5jam.c b/tools/h5jam/h5jam.c index 269ca89..a7c1cc7 100644 --- a/tools/h5jam/h5jam.c +++ b/tools/h5jam/h5jam.c @@ -182,9 +182,11 @@ parse_command_line (int argc, const char *argv[]) case 'h': usage (h5tools_getprogname()); leave (EXIT_SUCCESS); + break; case 'V': print_version (h5tools_getprogname()); leave (EXIT_SUCCESS); + break; case '?': default: usage (h5tools_getprogname()); @@ -201,10 +203,6 @@ parse_command_line (int argc, const char *argv[]) * Return: Success: 0 * Failure: 1 * - * Programmer: - * - * Modifications: - * *------------------------------------------------------------------------- */ int @@ -243,7 +241,7 @@ main (int argc, const char *argv[]) if (ub_file == NULL) { /* no user block */ - error_msg("missing arguemnt for -u <user_file>.\n"); + error_msg("missing argument for -u <user_file>.\n"); help_ref_msg(stderr); leave (EXIT_FAILURE); } @@ -257,7 +255,7 @@ main (int argc, const char *argv[]) } if (input_file == NULL) { - error_msg("missing arguemnt for -i <HDF5 file>.\n"); + error_msg("missing argument for -i <HDF5 file>.\n"); help_ref_msg(stderr); leave (EXIT_FAILURE); } diff --git a/tools/h5jam/h5unjam.c b/tools/h5jam/h5unjam.c index 9c83740..a269cfe 100644 --- a/tools/h5jam/h5unjam.c +++ b/tools/h5jam/h5unjam.c @@ -237,7 +237,7 @@ main(int argc, const char *argv[]) if (input_file == NULL) { /* no user block */ - error_msg("missing arguemnt for HDF5 file input.\n"); + error_msg("missing argument for HDF5 file input.\n"); help_ref_msg(stderr); h5tools_setstatus(EXIT_FAILURE); goto done; diff --git a/tools/h5ls/CMakeLists.txt b/tools/h5ls/CMakeLists.txt index 0e49edb..7763816 100644 --- a/tools/h5ls/CMakeLists.txt +++ b/tools/h5ls/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_H5LS) #----------------------------------------------------------------------------- @@ -10,7 +10,6 @@ INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib) # Add the h5ls executable #----------------------------------------------------------------------------- add_executable (h5ls ${HDF5_TOOLS_H5LS_SOURCE_DIR}/h5ls.c) -TARGET_NAMING (h5ls STATIC) TARGET_C_PROPERTIES (h5ls STATIC " " " ") target_link_libraries (h5ls ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5ls PROPERTIES FOLDER tools) @@ -20,7 +19,6 @@ set (H5_DEP_EXECUTABLES h5ls) if (BUILD_SHARED_LIBS) add_executable (h5ls-shared ${HDF5_TOOLS_H5LS_SOURCE_DIR}/h5ls.c) - TARGET_NAMING (h5ls-shared SHARED) TARGET_C_PROPERTIES (h5ls-shared SHARED " " " ") target_link_libraries (h5ls-shared ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5ls-shared PROPERTIES FOLDER tools) @@ -43,7 +41,7 @@ if (BUILD_TESTING) add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_ls.c) TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED " " " ") target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) - H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED ${HDF5_PACKAGE_SOVERSION}) + H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") # make plugins dir file (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins") @@ -73,10 +71,9 @@ endif () # Rules for Installation of tools using make Install target #----------------------------------------------------------------------------- if (HDF5_EXPORTED_TARGETS) - if (BUILD_SHARED_LIBS) - INSTALL_PROGRAM_PDB (h5ls-shared ${HDF5_INSTALL_BIN_DIR} toolsapplications) - endif () - INSTALL_PROGRAM_PDB (h5ls ${HDF5_INSTALL_BIN_DIR} toolsapplications) + foreach (exec ${H5_DEP_EXECUTABLES}) + INSTALL_PROGRAM_PDB (${exec} ${HDF5_INSTALL_BIN_DIR} toolsapplications) + endforeach () install ( TARGETS diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in index 1ea9bb3..5bcf480 100644 --- a/tools/h5ls/Makefile.in +++ b/tools/h5ls/Makefile.in @@ -709,6 +709,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1235,7 +1236,6 @@ help: @HAVE_SHARED_CONDITIONAL_TRUE@@NOT_UNAME_CYGWIN_TRUE@libdynlibls.la: $(libdynlibls_la_OBJECTS) $(libdynlibls_la_DEPENDENCIES) $(EXTRA_libdynlibls_la_DEPENDENCIES) @HAVE_SHARED_CONDITIONAL_TRUE@@NOT_UNAME_CYGWIN_TRUE@ $(AM_V_CCLD)$(libdynlibls_la_LINK) $(am_libdynlibls_la_rpath) $(libdynlibls_la_OBJECTS) $(libdynlibls_la_LIBADD) - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1323,28 +1323,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/h5ls/h5ls.c b/tools/h5ls/h5ls.c index 583f8bf..78a2cce 100644 --- a/tools/h5ls/h5ls.c +++ b/tools/h5ls/h5ls.c @@ -2680,6 +2680,7 @@ main(int argc, const char *argv[]) case 'h': /* --help */ usage(); leave(EXIT_SUCCESS); + break; case 'a': /* --address */ address_g = TRUE; @@ -2730,6 +2731,7 @@ main(int argc, const char *argv[]) case 'V': /* --version */ print_version(h5tools_getprogname()); leave(EXIT_SUCCESS); + break; case 'x': /* --hexdump */ hexdump_g = TRUE; diff --git a/tools/h5repack/CMakeLists.txt b/tools/h5repack/CMakeLists.txt index 86611a9..68f4070 100644 --- a/tools/h5repack/CMakeLists.txt +++ b/tools/h5repack/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_H5REPACK) #----------------------------------------------------------------------------- @@ -21,7 +21,6 @@ set (REPACK_COMMON_SRCS ) add_executable (h5repack ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_main.c) -TARGET_NAMING (h5repack STATIC) TARGET_C_PROPERTIES (h5repack STATIC " " " ") target_link_libraries (h5repack ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5repack PROPERTIES FOLDER tools) @@ -31,7 +30,6 @@ set (H5_DEP_EXECUTABLES h5repack) if (BUILD_SHARED_LIBS) add_executable (h5repack-shared ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_main.c) - TARGET_NAMING (h5repack-shared SHARED) TARGET_C_PROPERTIES (h5repack-shared SHARED " " " ") target_link_libraries (h5repack-shared ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5repack-shared PROPERTIES FOLDER tools) @@ -45,13 +43,11 @@ if (BUILD_TESTING) # Add h5Repack test executables # -------------------------------------------------------------------- add_executable (testh5repack_detect_szip ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testh5repack_detect_szip.c) - TARGET_NAMING (testh5repack_detect_szip STATIC) TARGET_C_PROPERTIES (testh5repack_detect_szip STATIC " " " ") target_link_libraries (testh5repack_detect_szip ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (testh5repack_detect_szip PROPERTIES FOLDER tools) add_executable (h5repacktest ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repacktst.c) - TARGET_NAMING (h5repacktest STATIC) TARGET_C_PROPERTIES (h5repacktest STATIC " " " ") target_link_libraries (h5repacktest ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (h5repacktest PROPERTIES FOLDER tools) @@ -71,12 +67,12 @@ if (BUILD_TESTING) add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_rpk.c) TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED " " " ") target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) - H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED ${HDF5_PACKAGE_SOVERSION}) + H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") add_library (${HDF5_TOOL_PLUGIN_LIB_VTARGET} SHARED dynlib_vrpk.c) TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_VTARGET} SHARED " " " ") target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_VTARGET} ${HDF5_TEST_LIB_TARGET}) - H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_VTARGET} ${HDF5_TOOL_PLUGIN_LIB_VNAME} SHARED ${HDF5_PACKAGE_SOVERSION}) + H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_VTARGET} ${HDF5_TOOL_PLUGIN_LIB_VNAME} SHARED "LIB") # make plugins dir file (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins") @@ -114,10 +110,9 @@ endif () # Rules for Installation of tools using make Install target #----------------------------------------------------------------------------- if (HDF5_EXPORTED_TARGETS) - if (BUILD_SHARED_LIBS) - INSTALL_PROGRAM_PDB (h5repack-shared ${HDF5_INSTALL_BIN_DIR} toolsapplications) - endif () - INSTALL_PROGRAM_PDB (h5repack ${HDF5_INSTALL_BIN_DIR} toolsapplications) + foreach (exec ${H5_DEP_EXECUTABLES}) + INSTALL_PROGRAM_PDB (${exec} ${HDF5_INSTALL_BIN_DIR} toolsapplications) + endforeach () install ( TARGETS diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index 2031191..8697a3c 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -758,6 +758,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1340,7 +1341,6 @@ h5repack.sh.chkexe_: h5repacktst.chkexe_ @HAVE_SHARED_CONDITIONAL_TRUE@@NOT_UNAME_CYGWIN_TRUE@ $(AM_V_CCLD)$(libdynlibadd_la_LINK) $(am_libdynlibadd_la_rpath) $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_LIBADD) @HAVE_SHARED_CONDITIONAL_TRUE@@NOT_UNAME_CYGWIN_TRUE@libdynlibvers.la: $(libdynlibvers_la_OBJECTS) $(libdynlibvers_la_DEPENDENCIES) $(EXTRA_libdynlibvers_la_DEPENDENCIES) @HAVE_SHARED_CONDITIONAL_TRUE@@NOT_UNAME_CYGWIN_TRUE@ $(AM_V_CCLD)$(libdynlibvers_la_LINK) $(am_libdynlibvers_la_rpath) $(libdynlibvers_la_OBJECTS) $(libdynlibvers_la_LIBADD) - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1428,28 +1428,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c index 63233b8..a4f8f5b 100644 --- a/tools/h5repack/h5repack_copy.c +++ b/tools/h5repack/h5repack_copy.c @@ -882,7 +882,7 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, HDfree(buf); buf = NULL; } - } + } else { /* possibly not enough memory, read/write by hyperslabs */ size_t p_type_nbytes = msize; /*size of memory type */ hsize_t p_nelmts = nelmts; /*total elements */ diff --git a/tools/h5repack/h5repack_filters.c b/tools/h5repack/h5repack_filters.c index 523f81a..8cc7b92 100644 --- a/tools/h5repack/h5repack_filters.c +++ b/tools/h5repack/h5repack_filters.c @@ -42,7 +42,7 @@ static int aux_copy_obj(hid_t dcpl_id, /* dataset creation property list */ H5D_layout_t layout; int rank; /* rank of dataset */ hsize_t chsize[64]; /* chunk size in elements */ - unsigned int i, j; + unsigned int i; /* get information about input filters */ if ((nfilters = H5Pget_nfilters(dcpl_id)) < 0) @@ -84,7 +84,8 @@ static int aux_find_obj(const char* name, /* object name from traverse list */ pack_opt_t *options, /* repack options */ pack_info_t *obj /*OUT*/) /* info about object to filter */ { - char *pdest; + char *pdest = NULL; + char *pname = NULL; int result; unsigned int i; @@ -94,11 +95,12 @@ static int aux_find_obj(const char* name, /* object name from traverse list */ return (int) i; } - pdest = HDstrstr(name, options->op_tbl->objs[i].path); - result = (int) (pdest - name); + pdest = options->op_tbl->objs[i].path; + if (pdest[0] == '/') pdest++; + pname = name; + if (pname[0] == '/') pname++; - /* found at position 1, meaning without '/' */ - if (pdest != NULL && result == 1) { + if (HDstrcmp(pdest, pname) == 0) { *obj = options->op_tbl->objs[i]; return (int) i; } @@ -237,7 +239,7 @@ int apply_filters(const char* name, /* object name from traverse list */ int nfilters; /* number of filters in DCPL */ hsize_t chsize[64]; /* chunk size in elements */ H5D_layout_t layout; - int i, j; + int i; pack_info_t obj; pack_info_t filtobj; @@ -275,25 +277,6 @@ int apply_filters(const char* name, /* object name from traverse list */ *has_filter = 1; if (H5Premove_filter(dcpl_id, H5Z_FILTER_ALL) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Premove_filter failed"); - - /*------------------------------------------------------------------------- - * check if there is an existent chunk - * read it only if there is not a requested layout - *------------------------------------------------------------------------- - */ - if (obj.layout == -1) { - if ((layout = H5Pget_layout(dcpl_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_layout failed"); - - if (layout == H5D_CHUNKED) { - if ((rank = H5Pget_chunk(dcpl_id, NELMTS(chsize), chsize/*out*/)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_chunk failed"); - obj.layout = H5D_CHUNKED; - obj.chunk.rank = rank; - for (i = 0; i < rank; i++) - obj.chunk.chunk_lengths[i] = chsize[i]; - } - } } else if(nfilters) { *has_filter = 1; @@ -302,6 +285,25 @@ int apply_filters(const char* name, /* object name from traverse list */ } /*------------------------------------------------------------------------- + * check if there is an existent chunk + * read it only if there is not a requested layout + *------------------------------------------------------------------------- + */ + if (obj.layout == -1) { + if ((layout = H5Pget_layout(dcpl_id)) < 0) + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_layout failed"); + + if (layout == H5D_CHUNKED) { + if ((rank = H5Pget_chunk(dcpl_id, NELMTS(chsize), chsize/*out*/)) < 0) + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_chunk failed"); + obj.layout = H5D_CHUNKED; + obj.chunk.rank = rank; + for (i = 0; i < rank; i++) + obj.chunk.chunk_lengths[i] = chsize[i]; + } + } + + /*------------------------------------------------------------------------- * the type of filter and additional parameter * type can be one of the filters * H5Z_FILTER_NONE 0 , uncompress if compressed diff --git a/tools/h5repack/h5repack_main.c b/tools/h5repack/h5repack_main.c index 0c5aac6..c739960 100644 --- a/tools/h5repack/h5repack_main.c +++ b/tools/h5repack/h5repack_main.c @@ -558,8 +558,8 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) break; case 'E': - enable_error_stack = TRUE; - break; + enable_error_stack = 1; + break; default: break; @@ -651,7 +651,7 @@ int main(int argc, const char **argv) } } - if (enable_error_stack) { + if (enable_error_stack > 0) { H5Eset_auto2(H5E_DEFAULT, func, edata); H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); } diff --git a/tools/h5repack/h5repack_parse.c b/tools/h5repack/h5repack_parse.c index 05af197..f646ee7 100644 --- a/tools/h5repack/h5repack_parse.c +++ b/tools/h5repack/h5repack_parse.c @@ -45,9 +45,9 @@ obj_list_t* parse_filter(const char *str, unsigned *n_objs, filter_info_t *filt, int f, k, l, p, q, end_obj = -1, no_param = 0; unsigned j, n; char sobj[MAX_NC_NAME]; - char scomp[10] = {0, 0, 0, 0, 0, 0, 0, 0, 0, 0}; - char stype[6] = {0, 0, 0, 0, 0, 0}; - char smask[3] = {0, 0, 0}; + char scomp[16] = {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}; + char stype[16] = {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}; + char smask[16] = {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}; obj_list_t* obj_list = NULL; unsigned pixels_per_block; @@ -116,7 +116,6 @@ obj_list_t* parse_filter(const char *str, unsigned *n_objs, filter_info_t *filt, if (c == '=' || i == len - 1) { if (c == '=') { /*one more parameter */ scomp[k] = '\0'; /*cut space */ - /*------------------------------------------------------------------------- * H5Z_FILTER_SZIP * szip has the format SZIP=<pixels per block,coding> @@ -236,8 +235,9 @@ obj_list_t* parse_filter(const char *str, unsigned *n_objs, filter_info_t *filt, filt->cd_nelmts = HDstrtoull(stype, NULL, 0); p = 0; } - else + else { filt->cd_values[j++] = (unsigned)HDstrtoul(stype, NULL, 0); + } q = 0; u++; /* skip ',' */ } diff --git a/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl b/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl index 1b0b821..80b8a19 100644 --- a/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl +++ b/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl @@ -76,8 +76,8 @@ GROUP "/" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 40, 20 ) / ( 40, H5S_UNLIMITED ) } STORAGE_LAYOUT { - CHUNKED ( 40, 20 ) - SIZE 1150 (2.783:1 COMPRESSION) + CHUNKED ( 20, 10 ) + SIZE 1283 (2.494:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } diff --git a/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl b/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl index 9e80c72..87b133d 100644 --- a/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl +++ b/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl @@ -92,7 +92,7 @@ GROUP "/" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 40, 20 ) / ( 40, H5S_UNLIMITED ) } STORAGE_LAYOUT { - CHUNKED ( 40, 20 ) + CHUNKED ( 20, 10 ) SIZE 3200 (1.000:1 COMPRESSION) } FILTERS { diff --git a/tools/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl b/tools/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl index 255ba9d..e8ac9a4 100644 --- a/tools/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl +++ b/tools/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl @@ -11,7 +11,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 8 20 } + PARAMS { 9 1 8 21 } } } FILLVALUE { @@ -33,7 +33,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 8 20 } + PARAMS { 9 1 8 21 } } } FILLVALUE { @@ -55,7 +55,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 8 20 } + PARAMS { 9 1 8 21 } } } FILLVALUE { @@ -77,7 +77,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 8 20 } + PARAMS { 9 1 8 21 } } } FILLVALUE { @@ -92,14 +92,14 @@ GROUP "/" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 40, 20 ) / ( 40, H5S_UNLIMITED ) } STORAGE_LAYOUT { - CHUNKED ( 40, 20 ) + CHUNKED ( 20, 10 ) SIZE 3200 (1.000:1 COMPRESSION) } FILTERS { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 8 20 } + PARAMS { 9 1 8 21 } } } FILLVALUE { @@ -121,7 +121,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 8 20 } + PARAMS { 9 1 8 21 } } } FILLVALUE { @@ -143,7 +143,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 8 20 } + PARAMS { 9 1 8 21 } } } FILLVALUE { diff --git a/tools/h5stat/CMakeLists.txt b/tools/h5stat/CMakeLists.txt index 8c9ec64..6e601d9 100644 --- a/tools/h5stat/CMakeLists.txt +++ b/tools/h5stat/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_H5STAT) #----------------------------------------------------------------------------- @@ -10,7 +10,6 @@ INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib) # Add the h5stat executables # -------------------------------------------------------------------- add_executable (h5stat ${HDF5_TOOLS_H5STAT_SOURCE_DIR}/h5stat.c) -TARGET_NAMING (h5stat STATIC) TARGET_C_PROPERTIES (h5stat STATIC " " " ") target_link_libraries (h5stat ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5stat PROPERTIES FOLDER tools) @@ -20,7 +19,6 @@ set (H5_DEP_EXECUTABLES h5stat) if (BUILD_SHARED_LIBS) add_executable (h5stat-shared ${HDF5_TOOLS_H5STAT_SOURCE_DIR}/h5stat.c) - TARGET_NAMING (h5stat-shared SHARED) TARGET_C_PROPERTIES (h5stat-shared SHARED " " " ") target_link_libraries (h5stat-shared ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5stat-shared PROPERTIES FOLDER tools) @@ -35,7 +33,6 @@ if (BUILD_TESTING) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5stat_gentest ${HDF5_TOOLS_H5STAT_SOURCE_DIR}/h5stat_gentest.c) - TARGET_NAMING (h5stat_gentest STATIC) TARGET_C_PROPERTIES (h5stat_gentest STATIC " " " ") target_link_libraries (h5stat_gentest ${HDF5_LIB_TARGET}) set_target_properties (h5stat_gentest PROPERTIES FOLDER generator/tools) @@ -56,10 +53,9 @@ endif () # Rules for Installation of tools using make Install target #----------------------------------------------------------------------------- if (HDF5_EXPORTED_TARGETS) - if (BUILD_SHARED_LIBS) - INSTALL_PROGRAM_PDB (h5stat-shared ${HDF5_INSTALL_BIN_DIR} toolsapplications) - endif () - INSTALL_PROGRAM_PDB (h5stat ${HDF5_INSTALL_BIN_DIR} toolsapplications) + foreach (exec ${H5_DEP_EXECUTABLES}) + INSTALL_PROGRAM_PDB (${exec} ${HDF5_INSTALL_BIN_DIR} toolsapplications) + endforeach () install ( TARGETS diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in index adbc776..08d608f 100644 --- a/tools/h5stat/Makefile.in +++ b/tools/h5stat/Makefile.in @@ -715,6 +715,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1274,7 +1275,6 @@ uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS help: @$(top_srcdir)/bin/makehelp - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1362,28 +1362,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/lib/CMakeLists.txt b/tools/lib/CMakeLists.txt index 4c145a4..c8bc187 100644 --- a/tools/lib/CMakeLists.txt +++ b/tools/lib/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_LIB) #----------------------------------------------------------------------------- @@ -39,9 +39,12 @@ set (H5_TOOLS_LIB_HDRS add_library (${HDF5_TOOLS_LIB_TARGET} STATIC ${H5_TOOLS_LIB_SRCS} ${H5_TOOLS_LIB_HDRS}) TARGET_C_PROPERTIES (${HDF5_TOOLS_LIB_TARGET} STATIC " " " ") -target_link_libraries (${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) +target_link_libraries (${HDF5_TOOLS_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET}) +if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND) + target_link_libraries (${HDF5_TOOLS_LIB_TARGET} PRIVATE ${MPI_C_LIBRARIES}) +endif () set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_TOOLS_LIB_TARGET}") -H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIB_TARGET} ${HDF5_TOOLS_LIB_NAME} STATIC) +H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIB_TARGET} ${HDF5_TOOLS_LIB_NAME} STATIC 0) set_target_properties (${HDF5_TOOLS_LIB_TARGET} PROPERTIES FOLDER libraries/tools INTERFACE_INCLUDE_DIRECTORIES "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" @@ -52,9 +55,12 @@ set (install_targets ${HDF5_TOOLS_LIB_TARGET}) if (BUILD_SHARED_LIBS) add_library (${HDF5_TOOLS_LIBSH_TARGET} SHARED ${H5_TOOLS_LIB_SRCS} ${H5_TOOLS_LIB_HDRS}) TARGET_C_PROPERTIES (${HDF5_TOOLS_LIBSH_TARGET} SHARED " " " ") - target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) + target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} PUBLIC ${HDF5_LIBSH_TARGET}) + if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND) + target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} PRIVATE ${MPI_C_LIBRARIES}) + endif () set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_TOOLS_LIBSH_TARGET}") - H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_TOOLS_LIB_NAME} SHARED ${HDF5_TOOLS_PACKAGE_SOVERSION}) + H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_TOOLS_LIB_NAME} SHARED "TOOLS") set_target_properties (${HDF5_TOOLS_LIBSH_TARGET} PROPERTIES FOLDER libraries/tools COMPILE_DEFINITIONS "H5_BUILT_AS_DYNAMIC_LIB" diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in index 342b4e8..49be556 100644 --- a/tools/lib/Makefile.in +++ b/tools/lib/Makefile.in @@ -693,6 +693,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1170,7 +1171,6 @@ uninstall-am: help: @$(top_srcdir)/bin/makehelp - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1258,28 +1258,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c index 6019738..7f08cc7 100644 --- a/tools/lib/h5diff_attr.c +++ b/tools/lib/h5diff_attr.c @@ -325,8 +325,6 @@ hsize_t diff_attr(hid_t loc1_id, hid_t space2_id = -1; /* space ID */ hid_t ftype1_id = -1; /* file data type ID */ hid_t ftype2_id = -1; /* file data type ID */ - int vstrtype1 = 0; /* ftype1 is a variable string */ - int vstrtype2 = 0; /* ftype2 is a variable string */ hid_t mtype1_id = -1; /* memory data type ID */ hid_t mtype2_id = -1; /* memory data type ID */ size_t msize1; /* memory size of memory type */ @@ -385,28 +383,8 @@ hsize_t diff_attr(hid_t loc1_id, /* get the datatypes */ if((ftype1_id = H5Aget_type(attr1_id)) < 0) HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); - vstrtype1 = H5Tis_variable_str(ftype1_id); if((ftype2_id = H5Aget_type(attr2_id)) < 0) HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); - vstrtype2 = H5Tis_variable_str(ftype2_id); - - /* no compare if either one but not both are variable string type */ - if (vstrtype1 != vstrtype2) { - if((opts->m_verbose || opts->m_list_not_cmp)) - parallel_print("Not comparable: one of attribute <%s/%s> or <%s/%s> is of variable length type\n", - path1, name1, path2, name2); - opts->not_cmp = 1; - if (H5Tclose(ftype1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose first attribute ftype failed"); - if (H5Tclose(ftype2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose second attribute ftype failed"); - if (H5Aclose(attr1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aclose first attribute failed"); - if (H5Aclose(attr2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aclose second attribute failed"); - - continue; - } if((mtype1_id = H5Tget_native_type(ftype1_id, H5T_DIR_DEFAULT)) < 0) HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type first attribute ftype failed"); diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c index 9d0462d..af6a171 100644 --- a/tools/lib/h5diff_dset.c +++ b/tools/lib/h5diff_dset.c @@ -192,7 +192,8 @@ hsize_t diff_datasetid(hid_t did1, hid_t sm_space = -1; /*stripmine data space */ size_t need; /* bytes needed for malloc */ int i; - unsigned int vl_data = 0; /*contains VL datatypes */ + unsigned int vl_data1 = 0; /*contains VL datatypes */ + unsigned int vl_data2 = 0; /*contains VL datatypes */ h5difftrace("diff_datasetid start\n"); /* Get the dataspace handle */ @@ -314,7 +315,9 @@ hsize_t diff_datasetid(hid_t did1, * VLEN memory buffer later */ if(TRUE == h5tools_detect_vlen(m_tid1)) - vl_data = TRUE; + vl_data1 = TRUE; + if(TRUE == h5tools_detect_vlen(m_tid2)) + vl_data2 = TRUE; h5diffdebug2("h5tools_detect_vlen - errstat:%d\n", opts->err_stat); /*------------------------------------------------------------------------ @@ -405,11 +408,12 @@ hsize_t diff_datasetid(hid_t did1, h5diffdebug2("diff_array nfound:%d\n", nfound); /* reclaim any VL memory, if necessary */ - if(vl_data) { - h5difftrace("check vl_data\n"); + h5diffdebug2("check vl_data1:%d\n", vl_data1); + if(vl_data1) H5Dvlen_reclaim(m_tid1, sid1, H5P_DEFAULT, buf1); + h5diffdebug2("check vl_data2:%d\n", vl_data2); + if(vl_data2) H5Dvlen_reclaim(m_tid2, sid2, H5P_DEFAULT, buf2); - } /* end if */ if(buf1 != NULL) { HDfree(buf1); buf1 = NULL; @@ -499,10 +503,10 @@ hsize_t diff_datasetid(hid_t did1, dadims, opts, name1, name2, dam_tid, did1, did2); /* reclaim any VL memory, if necessary */ - if(vl_data) { + if(vl_data1) H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf1); - H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf2); - } /* end if */ + if(vl_data2) + H5Dvlen_reclaim(m_tid2, sm_space, H5P_DEFAULT, sm_buf2); /* calculate the next hyperslab offset */ for(i = rank1, carry = 1; i > 0 && carry; --i) { @@ -539,29 +543,29 @@ done: /* free */ if(buf1 != NULL) { /* reclaim any VL memory, if necessary */ - if(vl_data) + if(vl_data1) H5Dvlen_reclaim(m_tid1, sid1, H5P_DEFAULT, buf1); HDfree(buf1); buf1 = NULL; } if(buf2 != NULL) { /* reclaim any VL memory, if necessary */ - if(vl_data) + if(vl_data2) H5Dvlen_reclaim(m_tid2, sid2, H5P_DEFAULT, buf2); HDfree(buf2); buf2 = NULL; } if(sm_buf1 != NULL) { /* reclaim any VL memory, if necessary */ - if(vl_data) + if(vl_data1) H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf1); HDfree(sm_buf1); sm_buf1 = NULL; } if(sm_buf2 != NULL) { /* reclaim any VL memory, if necessary */ - if(vl_data) - H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf2); + if(vl_data2) + H5Dvlen_reclaim(m_tid2, sm_space, H5P_DEFAULT, sm_buf2); HDfree(sm_buf2); sm_buf2 = NULL; } @@ -570,6 +574,7 @@ done: H5E_BEGIN_TRY { H5Sclose(sid1); H5Sclose(sid2); + H5Sclose(sm_space); H5Tclose(f_tid1); H5Tclose(f_tid2); H5Tclose(m_tid1); @@ -761,12 +766,31 @@ int diff_can_type(hid_t f_tid1, /* file data type */ } } + if(tclass1 == H5T_STRING) { + htri_t vstrtype1 = -1; + htri_t vstrtype2 = -1; + h5difftrace("diff_can_type end - H5T_STRING\n"); + + vstrtype1 = H5Tis_variable_str(f_tid1); + vstrtype2 = H5Tis_variable_str(f_tid2); + + /* no compare if either one but not both are variable string type */ + if (vstrtype1 != vstrtype2) { + if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) + parallel_print("Not comparable: <%s> or <%s> is of mixed string type\n", + obj1_name, obj2_name); + opts->not_cmp = 1; + HGOTO_DONE(0); + } + } + if(tclass1 == H5T_COMPOUND) { int nmembs1; int nmembs2; int j; hid_t memb_type1 = -1; hid_t memb_type2 = -1; + h5difftrace("diff_can_type end - H5T_COMPOUND\n"); nmembs1 = H5Tget_nmembers(f_tid1); nmembs2 = H5Tget_nmembers(f_tid2); diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c index 9230bb1..8ceaecc 100644 --- a/tools/lib/h5tools.c +++ b/tools/lib/h5tools.c @@ -43,7 +43,7 @@ unsigned packed_bits_num; /* number of packed bits to display */ unsigned packed_data_offset; /* offset of packed bits to display */ unsigned packed_data_length; /* length of packed bits to display */ unsigned long long packed_data_mask; /* mask in which packed bits to display */ -int enable_error_stack= FALSE; /* re-enable error stack */ +int enable_error_stack = 0; /* re-enable error stack; disable=0 enable=1 */ /* sort parameters */ H5_index_t sort_by = H5_INDEX_NAME; /*sort_by [creation_order | name] */ @@ -548,9 +548,15 @@ h5tools_fopen(const char *fname, unsigned flags, hid_t fapl, const char *driver, if ((my_fapl = h5tools_get_fapl(fapl, driver, &drivernum)) < 0) goto done; - H5E_BEGIN_TRY { + /* allow error stack display if enable-error-stack has optional arg number */ + if (enable_error_stack > 1) { fid = H5Fopen(fname, flags, my_fapl); - } H5E_END_TRY; + } + else { + H5E_BEGIN_TRY { + fid = H5Fopen(fname, flags, my_fapl); + } H5E_END_TRY; + } if (fid == FAIL) goto done; @@ -563,9 +569,15 @@ h5tools_fopen(const char *fname, unsigned flags, hid_t fapl, const char *driver, if((my_fapl = h5tools_get_fapl(fapl, drivernames[drivernum], NULL)) < 0) goto done; - H5E_BEGIN_TRY { + /* allow error stack display if enable-error-stack has optional arg number */ + if (enable_error_stack > 1) { fid = H5Fopen(fname, flags, my_fapl); - } H5E_END_TRY; + } + else { + H5E_BEGIN_TRY { + fid = H5Fopen(fname, flags, my_fapl); + } H5E_END_TRY; + } if (fid != FAIL) break; diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h index 09ec527..e24d654 100644 --- a/tools/lib/h5tools.h +++ b/tools/lib/h5tools.h @@ -545,7 +545,7 @@ H5TOOLS_DLLVAR H5_index_t sort_by; /*sort_by [creation_order | name] * H5TOOLS_DLLVAR H5_iter_order_t sort_order; /*sort_order [ascending | descending] */ /* things to display or which are set via command line parameters */ -H5TOOLS_DLLVAR int enable_error_stack; /* re-enable error stack */ +H5TOOLS_DLLVAR int enable_error_stack; /* re-enable error stack; disable=0 enable=1 */ /* Strings for output */ #define H5_TOOLS_GROUP "GROUP" diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c index 31c54d3..7ec5da8 100644 --- a/tools/lib/h5tools_dump.c +++ b/tools/lib/h5tools_dump.c @@ -2060,7 +2060,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); @@ -2071,7 +2070,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); @@ -2111,7 +2109,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); @@ -2150,7 +2147,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); @@ -2225,7 +2221,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); if(H5Tclose(str_type) < 0) @@ -2268,7 +2263,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_tag failed"); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_str_append(buffer, "OPAQUE_TAG \"%s\";", ttag); @@ -2279,7 +2273,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_str_append(buffer, "%s", h5tools_dump_header_format->structblockend); @@ -2298,7 +2291,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ mname = H5Tget_member_name(type, i); if((mtype = H5Tget_member_type(type, i)) >= 0) { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_print_datatype(stream, buffer, info, ctx, mtype, TRUE); @@ -2315,7 +2307,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_str_append(buffer, "%s", h5tools_dump_header_format->structblockend); @@ -2340,7 +2331,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_print_datatype(stream, buffer, info, ctx, super, TRUE); @@ -2356,7 +2346,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_str_append(buffer, "%s", h5tools_dump_header_format->enumblockend); @@ -2772,7 +2761,6 @@ h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, ncols = info->line_ncols; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s %d %s", OBJID, BEGIN, oid, END); @@ -2862,7 +2850,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", STORAGE_LAYOUT, BEGIN); @@ -2873,7 +2860,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, case H5D_CHUNKED: ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s ", CHUNKED); @@ -2886,7 +2872,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); @@ -2942,14 +2927,12 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, case H5D_COMPACT: ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", COMPACT); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "SIZE " HSIZE_T_FORMAT, storage_size); @@ -2969,14 +2952,12 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; if (next) { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", CONTIGUOUS); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", EXTERNAL, BEGIN); @@ -2987,7 +2968,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, H5Pget_external(dcpl_id, j, sizeof(name), name, &offset, &size); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "FILENAME %s SIZE " HSIZE_T_FORMAT, name, size); @@ -2997,7 +2977,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3007,21 +2986,18 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, haddr_t ioffset; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", CONTIGUOUS); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer,"SIZE " HSIZE_T_FORMAT, storage_size); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); ioffset = H5Dget_offset(obj_id); @@ -3041,7 +3017,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, }/*switch*/ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3053,7 +3028,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, */ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", FILTERS, BEGIN); @@ -3071,7 +3045,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, continue; /* nothing to print for invalid filter */ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); switch(filtn) { @@ -3097,14 +3070,12 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "PIXELS_PER_BLOCK %d", szip_pixels_per_block); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); if(szip_options_mask & H5_SZIP_CHIP_OPTION_MASK) @@ -3114,7 +3085,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); if(szip_options_mask & H5_SZIP_EC_OPTION_MASK) @@ -3124,7 +3094,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); if(szip_options_mask & H5_SZIP_LSB_OPTION_MASK) @@ -3135,7 +3104,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, if(szip_options_mask & H5_SZIP_RAW_OPTION_MASK) { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "HEADER %s", "RAW"); @@ -3145,7 +3113,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3166,7 +3133,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "FILTER_ID %d", filtn); @@ -3174,7 +3140,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, if(f_name[0] != '\0') { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "COMMENT %s", f_name); @@ -3182,7 +3147,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, } if (cd_nelmts) { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ","PARAMS", BEGIN); @@ -3194,7 +3158,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3206,7 +3169,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, else { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "NONE"); @@ -3215,7 +3177,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3226,7 +3187,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", FILLVALUE, BEGIN); @@ -3235,7 +3195,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "FILL_TIME "); @@ -3259,7 +3218,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s ", "VALUE "); @@ -3285,7 +3243,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3296,7 +3253,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "ALLOCATION_TIME %s", BEGIN); @@ -3305,7 +3261,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); H5Pget_alloc_time(dcpl_id, &at); @@ -3330,7 +3285,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3423,7 +3377,6 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, ncols = info->line_ncols; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s \"%s\" %s", @@ -3460,7 +3413,6 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, } ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); @@ -3579,7 +3531,6 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, ncols = info->line_ncols; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->subsettingbegin, h5tools_dump_header_format->subsettingblockbegin); @@ -3588,7 +3539,6 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->startbegin, h5tools_dump_header_format->startblockbegin); @@ -3597,7 +3547,6 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->stridebegin, h5tools_dump_header_format->strideblockbegin); @@ -3606,7 +3555,6 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->countbegin, h5tools_dump_header_format->countblockbegin); @@ -3620,7 +3568,6 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->blockbegin, h5tools_dump_header_format->blockblockbegin); diff --git a/tools/lib/io_timer.c b/tools/lib/io_timer.c index c894598..ab184d3 100644 --- a/tools/lib/io_timer.c +++ b/tools/lib/io_timer.c @@ -25,10 +25,6 @@ #include "H5private.h" #include "hdf5.h" -#ifdef H5_HAVE_PARALLEL -#include <mpi.h> -#endif - #include "io_timer.h" /* diff --git a/tools/lib/ph5diff.h b/tools/lib/ph5diff.h index 21d7d00..2189e31 100644 --- a/tools/lib/ph5diff.h +++ b/tools/lib/ph5diff.h @@ -42,9 +42,5 @@ struct diffs_found int not_cmp; }; -#ifdef H5_HAVE_PARALLEL -#include <mpi.h> -#endif - #endif /* _PH5DIFF_H__ */ diff --git a/tools/misc/CMakeLists.txt b/tools/misc/CMakeLists.txt index da1af42..de41a76 100644 --- a/tools/misc/CMakeLists.txt +++ b/tools/misc/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_MISC) #----------------------------------------------------------------------------- @@ -11,21 +11,18 @@ INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib) # -------------------------------------------------------------------- #-- Misc Executables add_executable (h5debug ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5debug.c) -TARGET_NAMING (h5debug STATIC) TARGET_C_PROPERTIES (h5debug STATIC " " " ") target_link_libraries (h5debug ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5debug PROPERTIES FOLDER tools) set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5debug") add_executable (h5repart ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5repart.c) -TARGET_NAMING (h5repart STATIC) TARGET_C_PROPERTIES (h5repart STATIC " " " ") target_link_libraries (h5repart ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5repart PROPERTIES FOLDER tools) set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5repart") add_executable (h5mkgrp ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5mkgrp.c) -TARGET_NAMING (h5mkgrp STATIC) TARGET_C_PROPERTIES (h5mkgrp STATIC " " " ") target_link_libraries (h5mkgrp ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5mkgrp PROPERTIES FOLDER tools) @@ -50,7 +47,6 @@ if (BUILD_TESTING) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5repart_gentest ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5repart_gentest.c) - TARGET_NAMING (h5repart_gentest STATIC) TARGET_C_PROPERTIES (h5repart_gentest STATIC " " " ") target_link_libraries (h5repart_gentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5repart_gentest PROPERTIES FOLDER generator/tools) @@ -58,7 +54,6 @@ if (BUILD_TESTING) endif () add_executable (h5repart_test ${HDF5_TOOLS_MISC_SOURCE_DIR}/repart_test.c) - TARGET_NAMING (h5repart_test STATIC) TARGET_C_PROPERTIES (h5repart_test STATIC " " " ") target_link_libraries (h5repart_test ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5repart_test PROPERTIES FOLDER tools) @@ -76,13 +71,13 @@ endif () # Rules for Installation of tools using make Install target #----------------------------------------------------------------------------- if (HDF5_EXPORTED_TARGETS) - INSTALL_PROGRAM_PDB (h5debug ${HDF5_INSTALL_BIN_DIR} toolsapplications) - INSTALL_PROGRAM_PDB (h5repart ${HDF5_INSTALL_BIN_DIR} toolsapplications) - INSTALL_PROGRAM_PDB (h5mkgrp ${HDF5_INSTALL_BIN_DIR} toolsapplications) + foreach (exec ${H5_DEP_EXECUTABLES}) + INSTALL_PROGRAM_PDB (${exec} ${HDF5_INSTALL_BIN_DIR} toolsapplications) + endforeach () install ( TARGETS - h5debug h5repart h5mkgrp + ${H5_DEP_EXECUTABLES} EXPORT ${HDF5_EXPORTED_TARGETS} RUNTIME DESTINATION ${HDF5_INSTALL_BIN_DIR} COMPONENT toolsapplications diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in index 7075597..0df01c9 100644 --- a/tools/misc/Makefile.in +++ b/tools/misc/Makefile.in @@ -747,6 +747,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1348,7 +1349,6 @@ uninstall-local: # How to build h5redeploy script h5redeploy: h5redeploy.in @cp $(srcdir)/$@.in $@ - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1436,28 +1436,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/misc/h5mkgrp.c b/tools/misc/h5mkgrp.c index 43d6bfe..b7ff73c 100644 --- a/tools/misc/h5mkgrp.c +++ b/tools/misc/h5mkgrp.c @@ -129,6 +129,7 @@ parse_command_line(int argc, const char *argv[], param_t *parms) case 'h': usage(); leave(EXIT_SUCCESS); + break; /* Create objects with the latest version of the format */ case 'l': @@ -149,6 +150,7 @@ parse_command_line(int argc, const char *argv[], param_t *parms) case 'V': print_version(h5tools_getprogname()); leave(EXIT_SUCCESS); + break; /* Bad command line argument */ default: diff --git a/tools/perform/CMakeLists.txt b/tools/perform/CMakeLists.txt index a52b22b..afafd42 100644 --- a/tools/perform/CMakeLists.txt +++ b/tools/perform/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_PERFORM ) #----------------------------------------------------------------------------- @@ -21,7 +21,6 @@ set (h5perf_serial_SRCS ${HDF5_PERFORM_SOURCE_DIR}/sio_engine.c ) add_executable (h5perf_serial ${h5perf_serial_SRCS}) -TARGET_NAMING (h5perf_serial STATIC) TARGET_C_PROPERTIES (h5perf_serial STATIC " " " ") target_link_libraries (h5perf_serial ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5perf_serial PROPERTIES FOLDER perform) @@ -33,7 +32,6 @@ if (HDF5_BUILD_PERFORM_STANDALONE) ${HDF5_PERFORM_SOURCE_DIR}/sio_engine.c ) add_executable (h5perf_serial_alone ${h5perf_serial_alone_SRCS}) - TARGET_NAMING (h5perf_serial_alone STATIC) TARGET_C_PROPERTIES (h5perf_serial_alone STATIC " " " ") target_link_libraries (h5perf_serial_alone ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5perf_serial_alone PROPERTIES FOLDER perform) @@ -47,7 +45,6 @@ set (chunk_SRCS ${HDF5_PERFORM_SOURCE_DIR}/chunk.c ) ADD_EXECUTABLE(chunk ${chunk_SRCS}) -TARGET_NAMING (chunk STATIC) TARGET_C_PROPERTIES (chunk STATIC " " " ") TARGET_LINK_LIBRARIES(chunk ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (chunk PROPERTIES FOLDER perform) @@ -57,7 +54,6 @@ set (iopipe_SRCS ${HDF5_PERFORM_SOURCE_DIR}/iopipe.c ) add_executable (iopipe ${iopipe_SRCS}) -TARGET_NAMING (iopipe STATIC) TARGET_C_PROPERTIES (iopipe STATIC " " " ") target_link_libraries (iopipe ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (iopipe PROPERTIES FOLDER perform) @@ -67,7 +63,6 @@ set (overhead_SRCS ${HDF5_PERFORM_SOURCE_DIR}/overhead.c ) add_executable (overhead ${overhead_SRCS}) -TARGET_NAMING (overhead STATIC) TARGET_C_PROPERTIES (overhead STATIC " " " ") target_link_libraries (overhead ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (overhead PROPERTIES FOLDER perform) @@ -78,7 +73,6 @@ if (BUILD_TESTING) ${HDF5_PERFORM_SOURCE_DIR}/perf_meta.c ) add_executable (perf_meta ${perf_meta_SRCS}) - TARGET_NAMING (perf_meta STATIC) TARGET_C_PROPERTIES (perf_meta STATIC " " " ") target_link_libraries (perf_meta ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (perf_meta PROPERTIES FOLDER perform) @@ -89,7 +83,6 @@ set (zip_perf_SRCS ${HDF5_PERFORM_SOURCE_DIR}/zip_perf.c ) add_executable (zip_perf ${zip_perf_SRCS}) -TARGET_NAMING (zip_perf STATIC) TARGET_C_PROPERTIES (zip_perf STATIC " " " ") target_link_libraries (zip_perf ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (zip_perf PROPERTIES FOLDER perform) @@ -101,7 +94,6 @@ if (H5_HAVE_PARALLEL AND BUILD_TESTING) ${HDF5_PERFORM_SOURCE_DIR}/pio_engine.c ) add_executable (h5perf ${h5perf_SRCS}) - TARGET_NAMING (h5perf STATIC) TARGET_C_PROPERTIES (h5perf STATIC " " " ") target_link_libraries (h5perf ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (h5perf PROPERTIES FOLDER perform) @@ -113,7 +105,6 @@ if (H5_HAVE_PARALLEL AND BUILD_TESTING) ${HDF5_PERFORM_SOURCE_DIR}/pio_engine.c ) add_executable (h5perf_alone ${h5perf_alone_SRCS}) - TARGET_NAMING (h5perf_alone STATIC) TARGET_C_PROPERTIES (h5perf_alone STATIC " " " ") target_link_libraries (h5perf_alone ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (h5perf_alone PROPERTIES FOLDER perform) diff --git a/tools/perform/Makefile.in b/tools/perform/Makefile.in index 1baa196..5af1830 100644 --- a/tools/perform/Makefile.in +++ b/tools/perform/Makefile.in @@ -754,6 +754,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1341,7 +1342,6 @@ uninstall-am: uninstall-binPROGRAMS help: @$(top_srcdir)/bin/makehelp - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1429,28 +1429,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/testfiles/h5dump-help.txt b/tools/testfiles/h5dump-help.txt index c80999e..bc37a8f 100644 --- a/tools/testfiles/h5dump-help.txt +++ b/tools/testfiles/h5dump-help.txt @@ -42,8 +42,8 @@ usage: h5dump [OPTIONS] files -m T, --format=T Set the floating point output format -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z - --enable-error-stack Prints messages from the HDF5 error stack as they - occur. + --enable-error-stack Prints messages from the HDF5 error stack as they occur. + Optional value 2 also prints file open errors. --no-compact-subset Disable compact form of subsetting and allow the use of "[" in dataset names. -w N, --width=N Set the number of columns of output. A value of 0 (zero) diff --git a/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl b/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl index c16fdf9..9de5727 100644 --- a/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl +++ b/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl @@ -42,8 +42,8 @@ usage: h5dump [OPTIONS] files -m T, --format=T Set the floating point output format -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z - --enable-error-stack Prints messages from the HDF5 error stack as they - occur. + --enable-error-stack Prints messages from the HDF5 error stack as they occur. + Optional value 2 also prints file open errors. --no-compact-subset Disable compact form of subsetting and allow the use of "[" in dataset names. -w N, --width=N Set the number of columns of output. A value of 0 (zero) diff --git a/tools/testfiles/pbits/tpbitsIncomplete.ddl b/tools/testfiles/pbits/tpbitsIncomplete.ddl index 0a9d38c..206cd0e 100644 --- a/tools/testfiles/pbits/tpbitsIncomplete.ddl +++ b/tools/testfiles/pbits/tpbitsIncomplete.ddl @@ -42,8 +42,8 @@ usage: h5dump [OPTIONS] files -m T, --format=T Set the floating point output format -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z - --enable-error-stack Prints messages from the HDF5 error stack as they - occur. + --enable-error-stack Prints messages from the HDF5 error stack as they occur. + Optional value 2 also prints file open errors. --no-compact-subset Disable compact form of subsetting and allow the use of "[" in dataset names. -w N, --width=N Set the number of columns of output. A value of 0 (zero) diff --git a/tools/testfiles/pbits/tpbitsLengthExceeded.ddl b/tools/testfiles/pbits/tpbitsLengthExceeded.ddl index 796f0f9..6b37ac6 100644 --- a/tools/testfiles/pbits/tpbitsLengthExceeded.ddl +++ b/tools/testfiles/pbits/tpbitsLengthExceeded.ddl @@ -42,8 +42,8 @@ usage: h5dump [OPTIONS] files -m T, --format=T Set the floating point output format -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z - --enable-error-stack Prints messages from the HDF5 error stack as they - occur. + --enable-error-stack Prints messages from the HDF5 error stack as they occur. + Optional value 2 also prints file open errors. --no-compact-subset Disable compact form of subsetting and allow the use of "[" in dataset names. -w N, --width=N Set the number of columns of output. A value of 0 (zero) diff --git a/tools/testfiles/pbits/tpbitsLengthPositive.ddl b/tools/testfiles/pbits/tpbitsLengthPositive.ddl index 55a0e76..5a82df1 100644 --- a/tools/testfiles/pbits/tpbitsLengthPositive.ddl +++ b/tools/testfiles/pbits/tpbitsLengthPositive.ddl @@ -42,8 +42,8 @@ usage: h5dump [OPTIONS] files -m T, --format=T Set the floating point output format -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z - --enable-error-stack Prints messages from the HDF5 error stack as they - occur. + --enable-error-stack Prints messages from the HDF5 error stack as they occur. + Optional value 2 also prints file open errors. --no-compact-subset Disable compact form of subsetting and allow the use of "[" in dataset names. -w N, --width=N Set the number of columns of output. A value of 0 (zero) diff --git a/tools/testfiles/pbits/tpbitsMaxExceeded.ddl b/tools/testfiles/pbits/tpbitsMaxExceeded.ddl index 89901c6..7aae845 100644 --- a/tools/testfiles/pbits/tpbitsMaxExceeded.ddl +++ b/tools/testfiles/pbits/tpbitsMaxExceeded.ddl @@ -42,8 +42,8 @@ usage: h5dump [OPTIONS] files -m T, --format=T Set the floating point output format -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z - --enable-error-stack Prints messages from the HDF5 error stack as they - occur. + --enable-error-stack Prints messages from the HDF5 error stack as they occur. + Optional value 2 also prints file open errors. --no-compact-subset Disable compact form of subsetting and allow the use of "[" in dataset names. -w N, --width=N Set the number of columns of output. A value of 0 (zero) diff --git a/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl b/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl index 51777d8..6982a78 100644 --- a/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl +++ b/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl @@ -42,8 +42,8 @@ usage: h5dump [OPTIONS] files -m T, --format=T Set the floating point output format -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z - --enable-error-stack Prints messages from the HDF5 error stack as they - occur. + --enable-error-stack Prints messages from the HDF5 error stack as they occur. + Optional value 2 also prints file open errors. --no-compact-subset Disable compact form of subsetting and allow the use of "[" in dataset names. -w N, --width=N Set the number of columns of output. A value of 0 (zero) diff --git a/tools/testfiles/pbits/tpbitsOffsetNegative.ddl b/tools/testfiles/pbits/tpbitsOffsetNegative.ddl index e76ff7f..086c3ce 100644 --- a/tools/testfiles/pbits/tpbitsOffsetNegative.ddl +++ b/tools/testfiles/pbits/tpbitsOffsetNegative.ddl @@ -42,8 +42,8 @@ usage: h5dump [OPTIONS] files -m T, --format=T Set the floating point output format -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z - --enable-error-stack Prints messages from the HDF5 error stack as they - occur. + --enable-error-stack Prints messages from the HDF5 error stack as they occur. + Optional value 2 also prints file open errors. --no-compact-subset Disable compact form of subsetting and allow the use of "[" in dataset names. -w N, --width=N Set the number of columns of output. A value of 0 (zero) |