[svn-r23318] HDFFV-8311: Improve tools testing and eliminate dependency problems

Tested: local linux

5 files changed, 663 insertions, 675 deletions

diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt
index 60e940a..7f68e76 100644
--- a/tools/h5copy/CMakeLists.txt
+++ b/tools/h5copy/CMakeLists.txt
@@ -44,9 +44,6 @@ IF (BUILD_TESTING)
 
   SET (LIST_OTHER_TEST_FILES
       ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_misc1.out
-      ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_extlinks_src.out.ls
-      ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_ref.out.ls
-      ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copytst.out.ls
   )
 
   FILE (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
@@ -227,42 +224,6 @@ IF (BUILD_TESTING)
   ENDMACRO (ADD_H5_TEST_SAME)
 
   #
-  # Test result with h5ls
-  #
-  MACRO (ADD_H5LS_TEST infile filetest)
-    # If using memchecker add tests without using scripts
-    IF (HDF5_ENABLE_USING_MEMCHECKER)
-      ADD_TEST (NAME H5COPY-h5ls-${infile}-${filetest} COMMAND $<TARGET_FILE:h5ls> -Svr ./testfiles/${filetest}.out.h5)
-      IF (NOT "${last_test}" STREQUAL "")
-        SET_TESTS_PROPERTIES (H5COPY-h5ls-${infile}-${filetest} PROPERTIES DEPENDS ${last_test})
-      ENDIF (NOT "${last_test}" STREQUAL "")
-    ELSE (HDF5_ENABLE_USING_MEMCHECKER)
-      # Remove any output file left over from previous test run
-      ADD_TEST (
-          NAME H5COPY-h5ls-${infile}-${filetest}-clear-objects
-          COMMAND    ${CMAKE_COMMAND}
-              -E remove 
-              ./testfiles/${filetest}.out.h5
-              ./testfiles/${filetest}.out.out
-              ./testfiles/${filetest}.out.out.err
-      )
-      ADD_TEST (
-          NAME H5COPY-h5ls-${file}-${filetest}
-          COMMAND "${CMAKE_COMMAND}"
-              -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>"
-              -D "TEST_ARGS=-Svr;./testfiles/${filetest}.out.h5"
-              -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-              -D "TEST_OUTPUT=./testfiles/${filetest}.out.out"
-              -D "TEST_EXPECT=0"
-              -D "TEST_REFERENCE=./testfiles/${infile}.out.ls"
-              -D "TEST_MASK=true"
-              -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
-      )
-      SET_TESTS_PROPERTIES (H5COPY-h5ls-${infile}-${filetest} PROPERTIES DEPENDS H5COPY-h5ls-${infile}-${filetest}-clear-objects)
-    ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
-  ENDMACRO (ADD_H5LS_TEST)
-
-  #
   # Similiar to ADD_H5_TEST macro. Compare to outputs from source & target
   # files instead of checking with h5ls.
   #
@@ -399,20 +360,12 @@ IF (BUILD_TESTING)
   ADD_H5_TEST (C_D_simple 0 ${HDF_FILE1}.h5 -vp -s /grp_dsets/simple -d /C/D/simple)
   ADD_H5_TEST (E_F_grp_dsets 0 ${HDF_FILE1}.h5 -vp -s /grp_dsets -d /E/F/grp_dsets)
   ADD_H5_TEST (G_H_grp_nested 0 ${HDF_FILE1}.h5 -vp -s /grp_nested -d /G/H/grp_nested)
-
-  # Verify that the file created above is correct
-  # This test is not independent of the above tests
-  #ADD_H5LS_TEST (${HDF_FILE1} basic)
   
 ############# COPY REFERENCES ##############
 
   # "Test copying object and region references"
   ADD_H5_F_TEST (region_ref 2 ${HDF_FILE2}.h5 ref -v -s / -d /COPY)
 
-  # Verify that the file created above is correct
-  # This test is not independent of the above tests
-  #ADD_H5LS_TEST (${HDF_FILE2} refs)
-
 ############# COPY EXT LINKS ############## 
 
   # "Test copying external link directly without -f ext"
@@ -439,10 +392,6 @@ IF (BUILD_TESTING)
   # "Test copying a group contains external links with -f ext"
   ADD_H5_F_TEST (ext_link_group_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext -d /copy2_group) 
 
-  # Verify that the file created above is correct
-  # This test is not independent of the above tests
-  #ADD_H5LS_TEST (${HDF_EXT_SRC_FILE} links)
-
 ############# Test misc. ############## 
 
   #-----------------------------------------------------------------
diff --git a/tools/h5copy/testh5copy.sh.in b/tools/h5copy/testh5copy.sh.in
index cd5f677..d30d8d8 100644
--- a/tools/h5copy/testh5copy.sh.in
+++ b/tools/h5copy/testh5copy.sh.in
@@ -57,9 +57,6 @@ $SRC_H5COPY_TESTFILES/h5copy_extlinks_trg.h5
 
 # List of expect files that will be copied over to local test dir
 LIST_OTHER_TEST_FILES="
-$SRC_H5COPY_TESTFILES/h5copy_extlinks_src.out.ls
-$SRC_H5COPY_TESTFILES/h5copy_ref.out.ls
-$SRC_H5COPY_TESTFILES/h5copytst.out.ls
 $SRC_H5COPY_TESTFILES/h5copy_misc1.out
 "
 
@@ -151,15 +148,6 @@ VERIFY()
 # Print a line-line message left justified in a field of 70 characters
 # beginning with the word "Verifying".
 #
-VERIFY_H5LS() 
-{
-    SPACES="                                                               "
-    echo "Verifying h5ls file structure $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Verifying".
-#
 VERIFY_OUTPUT() 
 {
     SPACES="                                                               "
@@ -183,24 +171,34 @@ TOOLTEST()
 {
     actualout="$TESTDIR/tooltest.actualout"
     actualerr="$TESTDIR/tooltest.actualerr"
-     runh5diff=yes
-     if [ "$1" = -i ]; then
-      inputfile=$2
-     else
-      runh5diff=no
-     fi
-     if [ "$3" = -o ]; then
-      outputfile=$4
-     else 
-      runh5diff=no
-     fi
+    runh5diff=yes
+    if [ "$1" = -i ]; then
+        inputfile=$2
+    else
+        if [ "$1" = -f ]; then
+            inputfile=$4
+        else
+            inputfile=$3
+        fi
+        runh5diff=no
+    fi
+    if [ "$3" = -o ]; then
+        outputfile=$4
+    else 
+        if [ "$1" = -f ]; then
+            outputfile=$6
+        else
+            outputfile=$5
+        fi
+        runh5diff=no
+    fi
   
     TESTING $H5COPY $@
     (
-    echo "#############################"
-    echo " output for '$H5COPY $@'"
-    echo "#############################"
-    $RUNSERIAL $H5COPY_BIN $@
+        echo "#############################"
+        echo " output for '$H5COPY $@'"
+        echo "#############################"
+        $RUNSERIAL $H5COPY_BIN $@
     ) > $actualout 2> $actualerr
     RET=$?
     if [ $RET != 0 ]; then
@@ -210,15 +208,141 @@ TOOLTEST()
         nerrors="`expr $nerrors + 1`"
     else
         echo " PASSED"
+    
+        if [ $runh5diff != no ]; then
+            H5DIFFTEST $inputfile $outputfile $7 $9
+        fi
 
         # Clean up output file
         if test -z "$HDF5_NOCLEANUP"; then
-           rm -f $actualout $actualerr
+            rm -f $actualout $actualerr $outputfile
+        fi
+    fi
+}
+
+# TOOLTEST back-to-back
+TOOLTEST_PREFILL() 
+{
+    actualout="$TESTDIR/tooltest.actualout"
+    actualerr="$TESTDIR/tooltest.actualerr"
+    runh5diff=yes
+    if [ "$1" = -i ]; then
+        inputfile=$2
+    else
+        runh5diff=no
+    fi
+    if [ "$3" = -o ]; then
+        outputfile=$4
+    else 
+        runh5diff=no
+    fi
+    
+    grp_name=$5
+    grp_name2=$6
+    obj_name=$7
+    obj_name2=$8
+  
+    TESTING $H5COPY $@
+    (
+        echo "#############################"
+        echo " output for '$H5COPY $@'"
+        echo "#############################"
+        $RUNSERIAL $H5COPY_BIN  -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name2 
+    ) > $actualout 2> $actualerr
+    RET=$?
+    if [ $RET != 0 ]; then
+        echo "*FAILED*"
+        echo "failed result is:"
+        cat $actualout
+        nerrors="`expr $nerrors + 1`"
+    else
+        TESTING $H5COPY $@
+        (
+            echo "#############################"
+            echo " output for '$H5COPY $@'"
+            echo "#############################"
+            $RUNSERIAL $H5COPY_BIN  -i $inputfile -o $outputfile -v -s $obj_name -d $obj_name2 
+        ) > $actualout 2> $actualerr
+        RET=$?
+        if [ $RET != 0 ]; then
+            echo "*FAILED*"
+            echo "failed result is:"
+            cat $actualout
+            nerrors="`expr $nerrors + 1`"
+        else
+            echo " PASSED"
+    
+            if [ $runh5diff != no ]; then
+                H5DIFFTEST $inputfile $outputfile $obj_name $obj_name2
+            fi
+        
+            # Clean up output file
+            if test -z "$HDF5_NOCLEANUP"; then
+                rm -f $actualout $actualerr $outputfile
+            fi
         fi
     fi
+}
+
+# TOOLTEST back-to-back
+TOOLTEST_SAME() 
+{
+    actualout="$TESTDIR/tooltest.actualout"
+    actualerr="$TESTDIR/tooltest.actualerr"
+    runh5diff=yes
+    if [ "$1" = -i ]; then
+        inputfile=$2
+    else
+        runh5diff=no
+    fi
+    if [ "$3" = -o ]; then
+        outputfile=$4
+    else 
+        runh5diff=no
+    fi
     
-    if [ $runh5diff != no ]; then
-     H5DIFFTEST $inputfile $outputfile $7 $9
+    grp_name=$5
+    grp_name2=$6
+  
+    TESTING $H5COPY $@
+    (
+        echo "#############################"
+        echo " output for '$H5COPY $@'"
+        echo "#############################"
+        $RUNSERIAL $H5COPY_BIN  -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name 
+    ) > $actualout 2> $actualerr
+    RET=$?
+    if [ $RET != 0 ]; then
+        echo "*FAILED*"
+        echo "failed result is:"
+        cat $actualout
+        nerrors="`expr $nerrors + 1`"
+    else
+        TESTING $H5COPY $@
+        (
+            echo "#############################"
+            echo " output for '$H5COPY $@'"
+            echo "#############################"
+            $RUNSERIAL $H5COPY_BIN  -i $outputfile -o $outputfile -v -s $grp_name -d $grp_name2 
+        ) > $actualout 2> $actualerr
+        RET=$?
+        if [ $RET != 0 ]; then
+            echo "*FAILED*"
+            echo "failed result is:"
+            cat $actualout
+            nerrors="`expr $nerrors + 1`"
+        else
+            echo " PASSED"
+    
+            if [ $runh5diff != no ]; then
+                H5DIFFTEST $outputfile $outputfile $grp_name $grp_name2
+            fi
+        
+            # Clean up output file
+            if test -z "$HDF5_NOCLEANUP"; then
+                rm -f $actualout $actualerr $outputfile
+            fi
+        fi
     fi
 }
 
@@ -259,18 +383,18 @@ TOOLTEST_FAIL()
     actualerr_sav=${actualerr}-sav
     shift
     if [ "$1" = -i ]; then
-      inputfile=$2
+        inputfile=$2
     fi
     if [ "$3" = -o ]; then
-      outputfile=$4
+        outputfile=$4
     fi
 
     TESTING $H5COPY $@
     (
-    #echo "#############################"
-    #echo " output for '$H5COPY $@'"
-    #echo "#############################"
-    $RUNSERIAL $H5COPY_BIN $@
+        #echo "#############################"
+        #echo " output for '$H5COPY $@'"
+        #echo "#############################"
+        $RUNSERIAL $H5COPY_BIN $@
     ) > $actualout 2> $actualerr
 
     RET=$?
@@ -298,7 +422,7 @@ TOOLTEST_FAIL()
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-       rm -f $actualout $actualerr $actualout_sav $actualerr_sav
+        rm -f $actualout $actualerr $actualout_sav $actualerr_sav $outputfile
     fi
 }
 
@@ -311,10 +435,10 @@ H5DIFFTEST()
     $RUNSERIAL $H5DIFF_BIN -q "$@" 
     RET=$?
     if [ $RET != 0 ] ; then
-         echo "*FAILED*"
-         nerrors="`expr $nerrors + 1`"
+        echo "*FAILED*"
+        nerrors="`expr $nerrors + 1`"
     else
-         echo " PASSED"
+        echo " PASSED"
     fi
 }
 
@@ -327,50 +451,13 @@ H5DIFFTEST_FAIL()
     RET=$?
 
     if [ $h5haveexitcode = 'yes' -a $RET != 1 ] ; then
-         echo "*FAILED*"
-         nerrors="`expr $nerrors + 1`"
+        echo "*FAILED*"
+        nerrors="`expr $nerrors + 1`"
     else
-         echo " PASSED"
+        echo " PASSED"
     fi
 }
 
-# Call the h5ls tool to verify the correct output data in the destination file
-#
-H5LSTEST() 
-{
-    expect="$TESTDIR/`basename $1 .h5`.ls"
-    actual="$TESTDIR/`basename $1 .h5`.ls.actualout"
-
-    # Stderr is included in stdout so that the diff can detect
-    # any unexpected output from that stream too.
-    #
-    # Note:  The modification time and storage utilization are masked off
-    #   so that the output is more portable
-    VERIFY_H5LS  $@
-    (
-      $RUNSERIAL $H5LS_BIN $H5LS_ARGS $@
-    ) 2>&1 |sed 's/Modified:.*/Modified:  XXXX-XX-XX XX:XX:XX XXX/' |sed 's/Storage:.*/Storage:   <details removed for portability>/' >$actual
-
-
-   if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-    echo " CREATED"
-    cp $actual $expect
-   elif $CMP $expect $actual; then
-      echo " PASSED"
-   else
-      echo "*FAILED*"
-      echo "    Expected result (*.ls) differs from actual result (*.out)"
-      nerrors="`expr $nerrors + 1`"
-      test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
-   fi
-
-   # Clean up output file
-   if test -z "$HDF5_NOCLEANUP"; then
-      rm -f $actual $actual_err
-   fi
-}
-
 # Copy single datasets of various forms from one group to another,
 #       adding object copied to the destination file each time
 #
@@ -379,82 +466,54 @@ H5LSTEST()
 COPY_OBJECTS() 
 {
     TESTFILE="$TESTDIR/h5copytst.h5"
-    FILEOUT="$TESTDIR/`basename h5copytst.h5 .h5`.out.h5"
-
-    # Remove any output file left over from previous test run
-    rm -f $FILEOUT
 
-    echo "Testing from `basename $TESTFILE` to `basename $FILEOUT` for the following tests:"
     echo "Test copying various forms of datasets"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s simple     -d simple
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s chunk      -d chunk
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compact    -d compact
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compound   -d compound
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compressed -d compressed
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s named_vl   -d named_vl
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s nested_vl  -d nested_vl
+    TOOLTEST -i $TESTFILE -o $TESTDIR/simple.out.h5 -v -s simple     -d simple
+    TOOLTEST -i $TESTFILE -o $TESTDIR/chunk.out.h5 -v -s chunk      -d chunk
+    TOOLTEST -i $TESTFILE -o $TESTDIR/compact.out.h5 -v -s compact    -d compact
+    TOOLTEST -i $TESTFILE -o $TESTDIR/compound.out.h5 -v -s compound   -d compound
+    TOOLTEST -i $TESTFILE -o $TESTDIR/compressed.out.h5 -v -s compressed -d compressed
+    TOOLTEST -i $TESTFILE -o $TESTDIR/named_vl.out.h5 -v -s named_vl   -d named_vl
+    TOOLTEST -i $TESTFILE -o $TESTDIR/nested_vl.out.h5 -v -s nested_vl  -d nested_vl
 
     echo "Test copying dataset within group in source file to root of destination"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets/simple  -d simple_top
+    TOOLTEST -i $TESTFILE -o $TESTDIR/simple_top.out.h5 -v -s grp_dsets/simple  -d simple_top
 
     echo "Test copying & renaming dataset"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compound   -d rename
+    TOOLTEST -i $TESTFILE -o $TESTDIR/dsrename.out.h5 -v -s compound   -d rename
 
     echo "Test copying empty, 'full' & 'nested' groups"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_empty  -d grp_empty
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets  -d grp_dsets
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_nested -d grp_nested
+    TOOLTEST -i $TESTFILE -o $TESTDIR/grp_empty.out.h5 -v -s grp_empty  -d grp_empty
+    TOOLTEST -i $TESTFILE -o $TESTDIR/grp_dsets.out.h5 -v -s grp_dsets  -d grp_dsets
+    TOOLTEST -i $TESTFILE -o $TESTDIR/grp_nested.out.h5 -v -s grp_nested -d grp_nested
 
     echo "Test copying dataset within group in source file to group in destination"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /grp_dsets/simple  -d /grp_dsets/simple_group
+    TOOLTEST_PREFILL -i $TESTFILE -o $TESTDIR/simple_group.out.h5 grp_dsets grp_dsets /grp_dsets/simple /grp_dsets/simple_group
 
     echo "Test copying & renaming group"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets  -d grp_rename
+    TOOLTEST -i $TESTFILE -o $TESTDIR/grp_rename.out.h5 -v -s grp_dsets  -d grp_rename
 
     echo "Test copying 'full' group hierarchy into group in destination file"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets  -d /grp_rename/grp_dsets
+    TOOLTEST_PREFILL -i $TESTFILE -o $TESTDIR/grp_dsets_rename.out.h5 grp_dsets grp_rename grp_dsets /grp_rename/grp_dsets
 
     echo "Test copying objects into group hier. that doesn't exist yet in destination file"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple    -d /A/B1/simple
-    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple    -d /A/B2/simple2
-    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets/simple    -d /C/D/simple
-    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets -d /E/F/grp_dsets
-    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_nested -d /G/H/grp_nested
-
-    # Verify that the file created above is correct
-    H5LSTEST $FILEOUT
-
-    # Remove output file created, if the "no cleanup" environment variable is
-    #   not defined
-    if test -z "$HDF5_NOCLEANUP"; then
-        rm -f $FILEOUT
-    fi
+    TOOLTEST -i $TESTFILE -o $TESTDIR/A_B1_simple.out.h5 -vp -s simple    -d /A/B1/simple
+    TOOLTEST -i $TESTFILE -o $TESTDIR/A_B2_simple2.out.h5 -vp -s simple    -d /A/B2/simple2
+    TOOLTEST -i $TESTFILE -o $TESTDIR/C_D_simple.out.h5 -vp -s /grp_dsets/simple    -d /C/D/simple
+    TOOLTEST -i $TESTFILE -o $TESTDIR/E_F_grp_dsets.out.h5 -vp -s /grp_dsets -d /E/F/grp_dsets
+    TOOLTEST -i $TESTFILE -o $TESTDIR/G_H_grp_nested.out.h5 -vp -s /grp_nested -d /G/H/grp_nested
 }
 
 # Copy references in various way.
-# adding to the destination file each time compare the result
 #
 # Assumed arguments:
 # <none>
 COPY_REFERENCES() 
 {
     TESTFILE="$TESTDIR/h5copy_ref.h5"
-    FILEOUT="$TESTDIR/`basename h5copy_ref.h5 .h5`.out.h5"
-
-    # Remove any output file left over from previous test run
-    rm -f $FILEOUT
 
     echo "Test copying object and region references"
-    TOOLTEST -f ref -i $TESTFILE -o $FILEOUT -v -s / -d /COPY
-
-    # Verify that the file created above is correct
-    H5LSTEST $FILEOUT
-
-    # Remove output file created, if the "no cleanup" environment variable is
-    #   not defined
-    if test -z "$HDF5_NOCLEANUP"; then
-        rm -f $FILEOUT
-    fi
+    TOOLTEST_F -f ref -i $TESTFILE -o $TESTDIR/region_ref.out.h5 -v -s / -d /COPY
 }
 
 # Copy external links.
@@ -465,43 +524,30 @@ COPY_REFERENCES()
 COPY_EXT_LINKS() 
 {
     TESTFILE="$TESTDIR/h5copy_extlinks_src.h5"
-    FILEOUT="$TESTDIR/`basename h5copy_extlinks_src.h5 .h5`.out.h5"
-
-    # Remove any output file left over from previous test run
-    rm -f $FILEOUT
 
     echo "Test copying external link directly without -f ext"
-    TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_dset -d /copy1_dset
+    TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_link.out.h5 -s /group_ext/extlink_dset -d /copy1_dset
 
     echo "Test copying external link directly with -f ext"
-    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_dset -d /copy2_dset
+    TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_link_f.out.h5 -v -s /group_ext/extlink_dset -d /copy2_dset
 
     echo "Test copying dangling external link (no obj) directly without -f ext"
-    TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_notyet1 -d /copy_dangle1_1
+    TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_dangle_noobj.out.h5 -s /group_ext/extlink_notyet1 -d /copy_dangle1_1
 
     echo "Test copying dangling external link (no obj) directly with -f ext"
-    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2
+    TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_dangle_noobj_f.out.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2
 
     echo "Test copying dangling external link (no file) directly without -f ext"
-    TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_notyet2 -d /copy_dangle2_1
+    TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_dangle_nofile.out.h5 -s /group_ext/extlink_notyet2 -d /copy_dangle2_1
 
     echo "Test copying dangling external link (no file) directly with -f ext"
-    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2
+    TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_dangle_nofile_f.out.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2
 
     echo "Test copying a group contains external links without -f ext"
-    TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy1_group
+    TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_link_group.out.h5 -s /group_ext -d /copy1_group
 
     echo "Test copying a group contains external links with -f ext"
-    TOOLTEST -f ext -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy2_group
-
-    # Verify that the file created above is correct
-    H5LSTEST $FILEOUT
-
-    # Remove output file created, if the "no cleanup" environment variable is
-    #   not defined
-    if test -z "$HDF5_NOCLEANUP"; then
-        rm -f $FILEOUT
-    fi
+    TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_link_group_f.out.h5 -v -s /group_ext -d /copy2_group
 }
 
 # Test misc.
@@ -511,28 +557,13 @@ COPY_EXT_LINKS()
 TEST_MISC() 
 {
     TESTFILE="$TESTDIR/h5copytst.h5"
-    FILEOUT="$TESTDIR/`basename h5copytst.h5 .h5`.out.h5"
-
-    # Remove any output file left over from previous test run
-    rm -f $h5copy_misc1.out.h5
 
     echo "Test copying object into group which doesn't exist, without -p"
-    TOOLTEST_FAIL h5copy_misc1.out -v -i $TESTFILE -o $TESTDIR/h5copy_misc1.out.h5 -s /simple  -d /g1/g2/simple
+    TOOLTEST_FAIL h5copy_misc1.out -i $TESTFILE -o $TESTDIR/h5copy_misc1.out.h5 -v -s /simple  -d /g1/g2/simple
 
     echo "Test copying objects to the same file "
-    rm -f $FILEOUT
-    # create temporary test file ($FILEOUT) with some objects
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /simple -d /simple 
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /grp_dsets  -d /grp_dsets
-    # actual test cases
-    TOOLTEST -i $FILEOUT -o $FILEOUT -v -s /simple -d /simple_cp
-    TOOLTEST -i $FILEOUT -o $FILEOUT -v -s /grp_dsets  -d /grp_dsets_cp
-
-    # Remove output file created, if the "no cleanup" environment variable is
-    #   not defined
-    if test -z "$HDF5_NOCLEANUP"; then
-        rm -f $FILEOUT
-    fi
+    TOOLTEST_SAME -i $TESTFILE -o $TESTDIR/samefile1.out.h5 /simple /simple_cp 
+    TOOLTEST_SAME -i $TESTFILE -o $TESTDIR/samefile2.out.h5 /grp_dsets /grp_dsets_cp
 }
 
 ##############################################################################
diff --git a/tools/h5jam/CMakeLists.txt b/tools/h5jam/CMakeLists.txt
index 437fed3..95777b3 100644
--- a/tools/h5jam/CMakeLists.txt
+++ b/tools/h5jam/CMakeLists.txt
@@ -112,6 +112,13 @@ IF (BUILD_TESTING)
       ENDIF (NOT "${resultcode}" STREQUAL "0")
     ELSE (HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
+          NAME H5JAM-${expectfile}-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove
+              ${expectfile}.out
+              ${expectfile}.out.err
+      )
+      ADD_TEST (
           NAME H5JAM-${expectfile}
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:h5jam>"
@@ -122,6 +129,7 @@ IF (BUILD_TESTING)
               -D "TEST_REFERENCE=testfiles/${expectfile}.txt"
               -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
       )
+      SET_TESTS_PROPERTIES (H5JAM-${expectfile} PROPERTIES DEPENDS H5JAM-${expectfile}-clear-objects)
     ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
   ENDMACRO (TEST_H5JAM_OUTPUT)
 
@@ -138,6 +146,13 @@ IF (BUILD_TESTING)
       ENDIF (NOT "${resultcode}" STREQUAL "0")
     ELSE (HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
+          NAME H5JAM-UNJAM-${expectfile}-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove
+              ${expectfile}.out
+              ${expectfile}.out.err
+      )
+      ADD_TEST (
           NAME H5JAM-UNJAM-${expectfile}
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>"
@@ -148,50 +163,38 @@ IF (BUILD_TESTING)
               -D "TEST_REFERENCE=testfiles/${expectfile}.txt"
               -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
       )
+      SET_TESTS_PROPERTIES (H5JAM-UNJAM-${expectfile} PROPERTIES DEPENDS H5JAM-UNJAM-${expectfile}-clear-objects)
     ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
   ENDMACRO (TEST_H5UNJAM_OUTPUT)
 
-  MACRO (CLEANUP testname)
-    ADD_TEST (
-        NAME H5JAM-CLEANUP-${testname}-clear-objects
-        COMMAND ${CMAKE_COMMAND} -E remove ${ARGN}
-    )
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5JAM-CLEANUP-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    SET (last_test "H5JAM-CLEANUP-${testname}-clear-objects")
-  ENDMACRO(CLEANUP testname testfile)
-
-  MACRO (CHECKFILE testname expected actual)
+  MACRO (CHECKFILE testname testdepends expected actual)
     # If using memchecker add tests without using scripts
     IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
-          NAME H5JAM-CHECKFILE-${testname}-clear-objects
+          NAME H5JAM-${testname}-CHECKFILE-clear-objects
           COMMAND    ${CMAKE_COMMAND}
               -E remove
-              ${expected}.new
-              ${expected}.new.err
+              ${actual}.new
+              ${actual}.new.err
               ${actual}.out
               ${actual}.out.err
       )
-      IF (NOT "${last_test}" STREQUAL "")
-        SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-      ENDIF (NOT "${last_test}" STREQUAL "")
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECKFILE-clear-objects PROPERTIES DEPENDS ${testdepends})
       ADD_TEST (
-          NAME H5JAM-CHECKFILE-H5DMP-${testname}
+          NAME H5JAM-${testname}-CHECKFILE-H5DMP
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
               -D "TEST_ARGS:STRING=testfiles/${expected}"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-              -D "TEST_OUTPUT=${expected}.new"
+              -D "TEST_OUTPUT=${actual}.new"
               -D "TEST_EXPECT=0"
               -D "TEST_FILTER=(^(HDF5)[^\n]*)"
               -D "TEST_SKIP_COMPARE=TRUE"
               -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
       )
-      SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-H5DMP-${testname} PROPERTIES DEPENDS H5JAM-CHECKFILE-${testname}-clear-objects)
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECKFILE-H5DMP PROPERTIES DEPENDS H5JAM-${testname}-CHECKFILE-clear-objects)
       ADD_TEST (
-          NAME H5JAM-CHECKFILE-H5DMP_CMP-${testname}
+          NAME H5JAM-${testname}-CHECKFILE-H5DMP_CMP
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
               -D "TEST_ARGS:STRING=${actual}"
@@ -199,168 +202,210 @@ IF (BUILD_TESTING)
               -D "TEST_OUTPUT=${actual}.out"
               -D "TEST_EXPECT=0"
               -D "TEST_FILTER=(^(HDF5)[^\n]*)"
-              -D "TEST_REFERENCE=${expected}.new"
+              -D "TEST_REFERENCE=${actual}.new"
               -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
       )
-      SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-H5DMP_CMP-${testname} PROPERTIES DEPENDS H5JAM-CHECKFILE-H5DMP-${testname})
-      SET (last_test "H5JAM-CHECKFILE-H5DMP_CMP-${testname}")
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECKFILE-H5DMP_CMP PROPERTIES DEPENDS H5JAM-${testname}-CHECKFILE-H5DMP)
     ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
-  ENDMACRO(CHECKFILE testname expected actual)
-
-  MACRO (SETUP testname infile outfile)
-    ADD_TEST (
-        NAME H5JAM-SETUP-${testname}-clear-objects
-        COMMAND ${CMAKE_COMMAND} -E remove ${outfile}
-    )
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5JAM-SETUP-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    ADD_TEST (
-        NAME H5JAM-SETUP-${testname}
-        COMMAND ${CMAKE_COMMAND} -E copy_if_different ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/testfiles/${infile} ${PROJECT_BINARY_DIR}/${outfile}
-    )
-    SET_TESTS_PROPERTIES (H5JAM-SETUP-${testname} PROPERTIES DEPENDS H5JAM-SETUP-${testname}-clear-objects)
-    SET (last_test "H5JAM-SETUP-${testname}")
-  ENDMACRO(SETUP testname infile outfile)
+  ENDMACRO(CHECKFILE testname testdepends expected actual)
 
-  MACRO (CHECK_UB_1 testname testfile ufile)
+  MACRO (UNJAMTEST testname setfile infile ufile chkfile outfile)
     IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
-          NAME H5JAM-CHECK_UB_1-${testname}-clear-objects
-          COMMAND    ${CMAKE_COMMAND}
-              -E remove
-              ${testfile}.len.txt
-              ${testfile}.cmp
-              ${ufile}.cmp
+          NAME H5JAM-${testname}-UNJAM-SETUP-clear-objects
+          COMMAND ${CMAKE_COMMAND} -E remove ${infile}
+      )
+      ADD_TEST (
+          NAME H5JAM-${testname}-UNJAM-SETUP
+          COMMAND ${CMAKE_COMMAND} -E copy_if_different ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/testfiles/${setfile} ${PROJECT_BINARY_DIR}/${infile}
+      )
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-SETUP PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-SETUP-clear-objects)
+      ADD_TEST (
+          NAME H5JAM-${testname}-UNJAM-clear-objects
+          COMMAND ${CMAKE_COMMAND} -E remove ${outfile}
       )
-      IF (NOT "${last_test}" STREQUAL "")
-        SET_TESTS_PROPERTIES (H5JAM-CHECK_UB_1-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-      ENDIF (NOT "${last_test}" STREQUAL "")
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-clear-objects PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-SETUP)
+      IF (NOT "${ufile}" STREQUAL "NONE")
+        ADD_TEST (
+            NAME H5JAM-${testname}-UNJAM_D-clear-objects
+            COMMAND ${CMAKE_COMMAND} -E remove ${ufile}
+        )
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM_D-clear-objects PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects)
+        ADD_TEST (NAME H5JAM-${testname}-UNJAM COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -u ${ufile} -o ${outfile})
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM_D-clear-objects)
+        SET (compare_test ${ufile})
+      ELSE (NOT "${ufile}" STREQUAL "NONE")
+        IF (NOT "${ARGN}" STREQUAL "--delete")
+          ADD_TEST (
+              NAME H5JAM-${testname}-UNJAM_D-clear-objects
+              COMMAND ${CMAKE_COMMAND} -E remove ${outfile}.ufile.txt ${outfile}.ufile.txt.err
+          )
+          SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM_D-clear-objects PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects)
+          ADD_TEST (
+              NAME H5JAM-${testname}-UNJAM
+              COMMAND "${CMAKE_COMMAND}"
+                  -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>"
+                  -D "TEST_ARGS:STRING=-i;${infile};-o;${outfile}"
+                  -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+                  -D "TEST_OUTPUT=${outfile}.ufile.txt"
+                  -D "TEST_EXPECT=0"
+                  -D "TEST_SKIP_COMPARE=TRUE"
+                  -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
+          )
+          SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM_D-clear-objects)
+          SET (compare_test "${outfile}.ufile.txt")
+        ELSE (NOT "${ARGN}" STREQUAL "--delete")
+          ADD_TEST (NAME H5JAM-${testname}-UNJAM COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -o ${outfile})
+          SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects)
+          SET (compare_test "")
+        ENDIF (NOT "${ARGN}" STREQUAL "--delete")
+      ENDIF (NOT "${ufile}" STREQUAL "NONE")
+      IF (NOT "${compare_test}" STREQUAL "")
+        ADD_TEST (
+            NAME H5JAM-${testname}-UNJAM-CHECK_UB_1-clear-objects
+            COMMAND    ${CMAKE_COMMAND}
+                -E remove
+                ${infile}.len.txt
+                ${infile}.cmp
+                ${infile}-ub.cmp
+        )
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_UB_1-clear-objects PROPERTIES DEPENDS "H5JAM-${testname}-UNJAM")
+        ADD_TEST (
+            NAME H5JAM-${testname}-UNJAM-CHECK_UB_1
+            COMMAND "${CMAKE_COMMAND}"
+                -D "TEST_PROGRAM=$<TARGET_FILE:tellub>"
+                -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>"
+                -D "TEST_CHECKUB=YES"
+                -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+                -D "TEST_HFILE=${infile}"
+                -D "TEST_UFILE=${compare_test}"
+                -D "TEST_EXPECT=0"
+                -D "TEST_OFILE="
+                -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake"
+        )
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_UB_1 PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-CHECK_UB_1-clear-objects)
+      ENDIF (NOT "${compare_test}" STREQUAL "")
+
       ADD_TEST (
-          NAME H5JAM-CHECK_UB_1-${testname}
+          NAME H5JAM-${testname}-UNJAM-CHECK_NOUB
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:tellub>"
               -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>"
-              -D "TEST_CHECKUB=YES"
+              -D "TEST_CHECKUB=NO"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-              -D "TEST_HFILE=${testfile}"
-              -D "TEST_UFILE=${ufile}"
+              -D "TEST_HFILE=${outfile}"
               -D "TEST_EXPECT=0"
-              -D "TEST_OFILE=${ARGN}"
+              -D "TEST_UFILE=NULL"
+              -D "TEST_OFILE=NULL"
               -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake"
       )
-      SET_TESTS_PROPERTIES (H5JAM-CHECK_UB_1-${testname} PROPERTIES DEPENDS H5JAM-CHECK_UB_1-${testname}-clear-objects)
-      SET (last_test "H5JAM-CHECK_UB_1-${testname}")
+      IF (NOT "${compare_test}" STREQUAL "")
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_NOUB PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-CHECK_UB_1)
+      ELSE (NOT "${compare_test}" STREQUAL "")
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_NOUB PROPERTIES DEPENDS H5JAM-${testname}-UNJAM)
+      ENDIF (NOT "${compare_test}" STREQUAL "")
+
+      CHECKFILE (${testname} "H5JAM-${testname}-UNJAM-CHECK_NOUB" ${chkfile} ${outfile})
     ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
-  ENDMACRO(CHECK_UB_1 testname testfile ufile)
+  ENDMACRO(UNJAMTEST testname infile ufile outfile)
 
-  MACRO (CHECK_NOUB testname testfile)
+  MACRO (JAMTEST testname jamfile infile chkfile outfile)
     IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
-          NAME H5JAM-CHECK_NOUB-${testname}
+          NAME H5JAM-${testname}-clear-objects
+          COMMAND ${CMAKE_COMMAND} -E remove ${outfile} ${infile}.cpy.h5
+      )
+    ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+    ADD_TEST (NAME H5JAM-${testname} COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i testfiles/${infile} -o ${outfile} ${ARGN})
+    IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+      SET_TESTS_PROPERTIES (H5JAM-${testname} PROPERTIES DEPENDS H5JAM-${testname}-clear-objects)
+      SET (compare_test ${outfile})
+      SET (compare_orig testfiles/${infile})
+      IF ("${ARGN}" STREQUAL "--clobber")
+        SET (compare_orig "")
+      ENDIF ("${ARGN}" STREQUAL "--clobber")
+
+      ADD_TEST (
+          NAME H5JAM-${testname}-CHECK_UB_1-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove
+              ${compare_test}.len.txt
+              ${compare_test}.cmp
+              ${compare_test}-ub.cmp
+      )
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECK_UB_1-clear-objects PROPERTIES DEPENDS "H5JAM-${testname}")
+      ADD_TEST (
+          NAME H5JAM-${testname}-CHECK_UB_1
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:tellub>"
               -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>"
-              -D "TEST_CHECKUB=NO"
+              -D "TEST_CHECKUB=YES"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-              -D "TEST_HFILE=${testfile}"
+              -D "TEST_HFILE=${compare_test}"
+              -D "TEST_UFILE=testfiles/${jamfile}"
               -D "TEST_EXPECT=0"
-              -D "TEST_UFILE=NULL"
-              -D "TEST_OFILE=NULL"
+              -D "TEST_OFILE=${compare_orig}"
               -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake"
       )
-      IF (NOT "${last_test}" STREQUAL "")
-        SET_TESTS_PROPERTIES (H5JAM-CHECK_NOUB-${testname} PROPERTIES DEPENDS ${last_test})
-      ENDIF (NOT "${last_test}" STREQUAL "")
-      SET (last_test "H5JAM-CHECK_NOUB-${testname}")
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECK_UB_1 PROPERTIES DEPENDS H5JAM-${testname}-CHECK_UB_1-clear-objects)
+      CHECKFILE (${testname} "H5JAM-${testname}-CHECK_UB_1" ${chkfile} ${outfile})
     ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
-  ENDMACRO(CHECK_NOUB testname testfile)
+  ENDMACRO (JAMTEST testname jamfile infile outfile)
 
-  MACRO (UNJAMTEST testname infile ufile outfile)
-    ADD_TEST (
-        NAME H5JAM-UNJAM-${testname}-clear-objects
-        COMMAND ${CMAKE_COMMAND} -E remove ${outfile}
-    )
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    IF (NOT "${ufile}" STREQUAL "NONE")
+  MACRO (JAMTEST_NONE testname jamfile infile setfile chkfile)
+    IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
-          NAME H5JAM-UNJAM_D-${testname}-clear-objects
-          COMMAND ${CMAKE_COMMAND} -E remove ${ufile}
+          NAME H5JAM-${testname}_NONE-clear-objects
+          COMMAND ${CMAKE_COMMAND} -E remove 
+              ${chkfile} ${chkfile}.cpy.h5
       )
-      SET_TESTS_PROPERTIES (H5JAM-UNJAM_D-${testname}-clear-objects PROPERTIES DEPENDS H5JAM-UNJAM-${testname}-clear-objects)
-      ADD_TEST (NAME H5JAM-UNJAM-${testname} COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -u ${ufile} -o ${outfile})
-      SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname} PROPERTIES DEPENDS H5JAM-UNJAM_D-${testname}-clear-objects)
-      SET (compare_test ${ufile})
-    ELSE (NOT "${ufile}" STREQUAL "NONE")
-      IF (NOT "${ARGN}" STREQUAL "--delete")
-        ADD_TEST (
-            NAME H5JAM-UNJAM_D-${testname}-clear-objects
-            COMMAND ${CMAKE_COMMAND} -E remove ${outfile}.ufile.txt ${outfile}.ufile.txt.err
-        )
-        SET_TESTS_PROPERTIES (H5JAM-UNJAM_D-${testname}-clear-objects PROPERTIES DEPENDS H5JAM-UNJAM-${testname}-clear-objects)
-        IF (HDF5_ENABLE_USING_MEMCHECKER)
-          ADD_TEST (NAME H5JAM-UNJAM-${testname} COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -o ${outfile})
-        ELSE (HDF5_ENABLE_USING_MEMCHECKER)
-          ADD_TEST (
-              NAME H5JAM-UNJAM-${testname}
-              COMMAND "${CMAKE_COMMAND}"
-                  -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>"
-                  -D "TEST_ARGS:STRING=-i;${infile};-o;${outfile}"
-                  -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-                  -D "TEST_OUTPUT=${outfile}.ufile.txt"
-                  -D "TEST_EXPECT=0"
-                  -D "TEST_SKIP_COMPARE=TRUE"
-                  -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
-          )
-        ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
-        SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname} PROPERTIES DEPENDS H5JAM-UNJAM_D-${testname}-clear-objects)
-        SET (compare_test "${outfile}.ufile.txt")
-      ELSE (NOT "${ARGN}" STREQUAL "--delete")
-        ADD_TEST (NAME H5JAM-UNJAM-${testname} COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -o ${outfile})
-        SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname} PROPERTIES DEPENDS H5JAM-UNJAM-${testname}-clear-objects)
-        SET (compare_test "")
-      ENDIF (NOT "${ARGN}" STREQUAL "--delete")
-    ENDIF (NOT "${ufile}" STREQUAL "NONE")
-    SET (last_test "H5JAM-UNJAM-${testname}")
-    IF (NOT "${compare_test}" STREQUAL "")
-      CHECK_UB_1 (${testname} ${infile} ${compare_test})
-    ENDIF (NOT "${compare_test}" STREQUAL "")
-    CHECK_NOUB (${testname} ${outfile})
-  ENDMACRO(UNJAMTEST testname infile ufile outfile)
+      ADD_TEST (
+          NAME H5JAM-${testname}_NONE-SETUP
+          COMMAND ${CMAKE_COMMAND} -E copy_if_different testfiles/${setfile} ${chkfile}
+      )
+      SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE-SETUP PROPERTIES DEPENDS H5JAM-${testname}_NONE-clear-objects)
 
-  MACRO (JAMTEST testname jamfile infile outfile)
-    ADD_TEST (
-        NAME H5JAM-${testname}-clear-objects
-        COMMAND ${CMAKE_COMMAND} -E remove ${outfile} ${infile}.cpy.h5
-    )
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5JAM-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    SET (last_test "H5JAM-${testname}-clear-objects")
-    IF ("${outfile}" STREQUAL "NONE")
       ADD_TEST (
-          NAME H5JAM-NONE_COPY-${testname}
-          COMMAND ${CMAKE_COMMAND} -E copy_if_different ${infile} ${infile}.cpy.h5
+          NAME H5JAM-${testname}_NONE_COPY
+          COMMAND ${CMAKE_COMMAND} -E copy_if_different ${chkfile} ${chkfile}.cpy.h5
       )
-      SET_TESTS_PROPERTIES (H5JAM-NONE_COPY-${testname} PROPERTIES DEPENDS ${last_test})
-      SET (last_test "H5JAM-NONE_COPY-${testname}")
-      ADD_TEST (NAME H5JAM-${testname} COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i ${infile} ${ARGN})
-      SET (compare_test ${infile})
-      SET (compare_orig ${infile}.cpy.h5)
-    ELSE ("${outfile}" STREQUAL "NONE")
-      ADD_TEST (NAME H5JAM-${testname} COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i testfiles/${infile} -o ${outfile} ${ARGN})
-      SET (compare_test ${outfile})
-      SET (compare_orig testfiles/${infile})
-    ENDIF ("${outfile}" STREQUAL "NONE")
-    SET_TESTS_PROPERTIES (H5JAM-${testname} PROPERTIES DEPENDS ${last_test})
-    SET (last_test "H5JAM-${testname}")
-    IF ("${ARGN}" STREQUAL "--clobber")
-      SET (compare_orig "")
-    ENDIF ("${ARGN}" STREQUAL "--clobber")
-    CHECK_UB_1 (${testname} ${compare_test} testfiles/${jamfile} ${compare_orig})
-  ENDMACRO (JAMTEST testname jamfile infile outfile)
+      SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE_COPY PROPERTIES DEPENDS H5JAM-${testname}_NONE-SETUP)
+
+      ADD_TEST (NAME H5JAM-${testname}_NONE COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i ${chkfile} ${ARGN})
+      SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE PROPERTIES DEPENDS H5JAM-${testname}_NONE_COPY)
+
+      SET (compare_test ${chkfile})
+      SET (compare_orig ${chkfile}.cpy.h5)
+      IF ("${ARGN}" STREQUAL "--clobber")
+        SET (compare_orig "")
+      ENDIF ("${ARGN}" STREQUAL "--clobber")
+
+      ADD_TEST (
+          NAME H5JAM-${testname}_NONE-CHECK_UB_1-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove
+              ${compare_test}.len.txt
+              ${compare_test}.cmp
+              ${compare_test}-ub.cmp
+      )
+      SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE-CHECK_UB_1-clear-objects PROPERTIES DEPENDS "H5JAM-${testname}_NONE")
+      ADD_TEST (
+          NAME H5JAM-${testname}_NONE-CHECK_UB_1
+          COMMAND "${CMAKE_COMMAND}"
+              -D "TEST_PROGRAM=$<TARGET_FILE:tellub>"
+              -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>"
+              -D "TEST_CHECKUB=YES"
+              -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+              -D "TEST_HFILE=${compare_test}"
+              -D "TEST_UFILE=testfiles/${jamfile}"
+              -D "TEST_EXPECT=0"
+              -D "TEST_OFILE=${compare_orig}"
+              -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake"
+      )
+      SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE-CHECK_UB_1 PROPERTIES DEPENDS H5JAM-${testname}_NONE-CHECK_UB_1-clear-objects)
+      CHECKFILE (${testname} "H5JAM-${testname}_NONE-CHECK_UB_1" ${infile} ${chkfile})
+    ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+  ENDMACRO (JAMTEST_NONE testname jamfile infile setfile chkfile)
 
 ##############################################################################
 ##############################################################################
@@ -377,118 +422,45 @@ IF (BUILD_TESTING)
   # don't allow HDF5 format file as an user block file
   TEST_H5JAM_OUTPUT(h5jam-ub-nohdf5 1 -i testfiles/tall.h5 -u testfiles/tall.h5 -o tall-tmp.h5)
 
-  JAMTEST (tall_u10 u10.txt tall.h5 ta2.h5)
-  CHECKFILE (tall_u10 tall.h5 ta2.h5)
-#  CLEANUP (tall_u10 ta2.h5)
-  JAMTEST (tall_u511 u511.txt tall.h5 ta3.h5)
-  CHECKFILE (tall_u511 tall.h5 ta3.h5)
-#  CLEANUP (tall_u511 ta3.h5)
-  JAMTEST (tall_u512 u512.txt tall.h5 ta4.h5)
-  CHECKFILE (tall_u512 tall.h5 ta4.h5)
-#  CLEANUP (tall_u512 ta4.h5)
-  JAMTEST (tall_u513 u513.txt tall.h5 ta5.h5)
-  CHECKFILE (tall_u513 tall.h5 ta5.h5)
-#  CLEANUP (tall_u513 ta5.h5)
-
-  SETUP (ta_u10 tall.h5 ta.h5)
-  JAMTEST (ta_u10 u10.txt ta.h5 NONE)
-  CHECKFILE (ta_u10 tall.h5 ta.h5)
-  SETUP (ta_u511 tall.h5 ta.h5 NOCLEAN)
-  JAMTEST (ta_u511 u511.txt ta.h5 NONE)
-  CHECKFILE (ta_u511 tall.h5 ta.h5)
-  SETUP (ta_u512 tall.h5 ta.h5 NOCLEAN)
-  JAMTEST (ta_u512 u512.txt ta.h5 NONE)
-  CHECKFILE (ta_u512 tall.h5 ta.h5)
-  SETUP (ta_u513 tall.h5 ta.h5 NOCLEAN)
-  JAMTEST (ta_u513 u513.txt ta.h5 NONE)
-  CHECKFILE (ta_u513 tall.h5 ta.h5)
-#  CLEANUP (ta ta.h5)
-
-  JAMTEST (twithub_u10 u10.txt twithub.h5 tax2.h5)
-  CHECKFILE (twithub_u10 tall.h5 tax2.h5)
-#  CLEANUP (twithub_u10 tax2.h5)
-  JAMTEST (twithub_u511 u511.txt twithub.h5 tax3.h5)
-  CHECKFILE (twithub_u511 tall.h5 tax3.h5)
-#  CLEANUP (twithub_u511 tax3.h5)
-  JAMTEST (twithub_u512 u512.txt twithub.h5 tax4.h5)
-  CHECKFILE (twithub_u512 tall.h5 tax4.h5)
-#  CLEANUP (twithub_u512 tax4.h5)
-  JAMTEST (twithub_u513 u513.txt twithub.h5 tax5.h5)
-  CHECKFILE (twithub_u513 tall.h5 tax5.h5)
-#  CLEANUP (twithub_u513 tax5.h5)
-
-  JAMTEST (twithub513_u10 u10.txt twithub513.h5 tax6.h5)
-  CHECKFILE (twithub513_u10 tall.h5 tax6.h5)
-#  CLEANUP (twithub513_u10 tax6.h5)
-  JAMTEST (twithub513_u511 u511.txt twithub513.h5 tax7.h5)
-  CHECKFILE (twithub513_u511 tall.h5 tax7.h5)
-#  CLEANUP (twithub513_u511 tax7.h5)
-  JAMTEST (twithub513_u512 u512.txt twithub513.h5 tax8.h5)
-  CHECKFILE (twithub513_u512 tall.h5 tax8.h5)
-#  CLEANUP (twithub513_u512 tax8.h5)
-  JAMTEST (twithub513_u513 u513.txt twithub513.h5 tax9.h5)
-  CHECKFILE (twithub513_u513 tall.h5 tax9.h5)
-#  CLEANUP (twithub513_u513 tax9.h5)
-
-  JAMTEST (twithub_u10_c u10.txt twithub.h5 taz2.h5 --clobber)
-  CHECKFILE (twithub_u10_c tall.h5 taz2.h5)
-#  CLEANUP (twithub_u10_c taz2.h5)
-  JAMTEST (twithub_u511_c u511.txt twithub.h5 taz3.h5 --clobber)
-  CHECKFILE (twithub_u511_c tall.h5 taz3.h5)
-#  CLEANUP (twithub_u511_c taz3.h5)
-  JAMTEST (twithub_u512_c u512.txt twithub.h5 taz4.h5 --clobber)
-  CHECKFILE (twithub_u512_c tall.h5 taz4.h5)
-#  CLEANUP (twithub_u512_c taz4.h5)
-  JAMTEST (twithub_u513_c u513.txt twithub.h5 taz5.h5 --clobber)
-  CHECKFILE (twithub_u513_c tall.h5 taz5.h5)
-#  CLEANUP (twithub_u513_c taz5.h5)
-
-  JAMTEST (twithub513_u10_c u10.txt twithub513.h5 taz6.h5 --clobber)
-  CHECKFILE (twithub513_u10_c tall.h5 taz6.h5)
-#  CLEANUP (twithub513_u10_c taz6.h5)
-  JAMTEST (twithub513_u511_c u511.txt twithub513.h5 taz7.h5 --clobber)
-  CHECKFILE (twithub513_u511_c tall.h5 taz7.h5)
-#  CLEANUP (twithub513_u511_c taz7.h5)
-  JAMTEST (twithub513_u512_c u512.txt twithub513.h5 taz8.h5 --clobber)
-  CHECKFILE (twithub513_u512_c tall.h5 taz8.h5)
-#  CLEANUP (twithub513_u512_c taz8.h5)
-  JAMTEST (twithub513_u513_c u513.txt twithub513.h5 taz9.h5 --clobber)
-  CHECKFILE (twithub513_u513_c tall.h5 taz9.h5)
-#  CLEANUP (twithub513_u513_c taz9.h5)
-
-  SETUP (N_twithub_u10_c twithub.h5 tay2.h5)
-  JAMTEST (N_twithub_u10_c u10.txt tay2.h5 NONE --clobber)
-  CHECKFILE (N_twithub_u10_c tall.h5 tay2.h5)
-#  CLEANUP (N_twithub_u10_c tay2.h5)
-  SETUP (N_twithub_u511_c twithub.h5 tay3.h5)
-  JAMTEST (N_twithub_u511_c u511.txt tay3.h5 NONE --clobber)
-  CHECKFILE (N_twithub_u511_c tall.h5 tay3.h5)
-#  CLEANUP (N_twithub_u511_c tay3.h5)
-  SETUP (N_twithub_u512_c twithub.h5 tay4.h5)
-  JAMTEST (N_twithub_u512_c u512.txt tay4.h5 NONE --clobber)
-  CHECKFILE (N_twithub_u512_c tall.h5 tay4.h5)
-#  CLEANUP (N_twithub_u512_c tay4.h5)
-  SETUP (N_twithub_u513_c twithub.h5 tay5.h5)
-  JAMTEST (N_twithub_u513_c u513.txt tay5.h5 NONE --clobber)
-  CHECKFILE (N_twithub_u513_c tall.h5 tay5.h5)
-#  CLEANUP (N_twithub_u513_c tay5.h5)
-
-  SETUP (N_twithub513_u10_c twithub513.h5 tay6.h5)
-  JAMTEST (N_twithub513_u10_c u10.txt tay6.h5 NONE --clobber)
-  CHECKFILE (N_twithub513_u10_c tall.h5 tay6.h5)
-#  CLEANUP (N_twithub513_u10_c tay6.h5)
-  SETUP (N_twithub513_u511_c twithub513.h5 tay7.h5)
-  JAMTEST (N_twithub513_u511_c u511.txt tay7.h5 NONE --clobber)
-  CHECKFILE (N_twithub513_u511_c tall.h5 tay7.h5)
-#  CLEANUP (N_twithub513_u511_c tay7.h5)
-  SETUP (N_twithub513_u512_c twithub513.h5 tay8.h5)
-  JAMTEST (N_twithub513_u512_c u512.txt tay8.h5 NONE --clobber)
-  CHECKFILE (N_twithub513_u512_c tall.h5 tay8.h5)
-#  CLEANUP (N_twithub513_u512_c tay8.h5)
-  SETUP (N_twithub513_u513_c twithub513.h5 tay9.h5)
-  JAMTEST (N_twithub513_u513_c u513.txt tay9.h5 NONE --clobber)
-  CHECKFILE (N_twithub513_u513_c tall.h5 tay9.h5)
-#  CLEANUP (N_twithub513_u513_c tay9.h5)
+  JAMTEST (tall_u10 u10.txt tall.h5 tall.h5 ta2.h5)
+  JAMTEST (tall_u511 u511.txt tall.h5 tall.h5 ta3.h5)
+  JAMTEST (tall_u512 u512.txt tall.h5 tall.h5 ta4.h5)
+  JAMTEST (tall_u513 u513.txt tall.h5 tall.h5 ta5.h5)
+
+  JAMTEST_NONE (N_ta_u10 u10.txt tall.h5 tall.h5 ta6.h5)
+  JAMTEST_NONE (N_ta_u511 u511.txt tall.h5 tall.h5 ta7.h5)
+  JAMTEST_NONE (N_ta_u512 u512.txt tall.h5 tall.h5 ta8.h5)
+  JAMTEST_NONE (N_ta_u513 u513.txt tall.h5 tall.h5 ta9.h5)
+
+  JAMTEST (twithub_u10 u10.txt twithub.h5 tall.h5 tax2.h5)
+  JAMTEST (twithub_u511 u511.txt twithub.h5 tall.h5 tax3.h5)
+  JAMTEST (twithub_u512 u512.txt twithub.h5 tall.h5 tax4.h5)
+  JAMTEST (twithub_u513 u513.txt twithub.h5 tall.h5 tax5.h5)
+
+  JAMTEST (twithub513_u10 u10.txt twithub513.h5 tall.h5 tax6.h5)
+  JAMTEST (twithub513_u511 u511.txt twithub513.h5 tall.h5 tax7.h5)
+  JAMTEST (twithub513_u512 u512.txt twithub513.h5 tall.h5 tax8.h5)
+  JAMTEST (twithub513_u513 u513.txt twithub513.h5 tall.h5 tax9.h5)
+
+  JAMTEST (twithub_u10_c u10.txt twithub.h5 tall.h5 taz2.h5 --clobber)
+  JAMTEST (twithub_u511_c u511.txt twithub.h5 tall.h5 taz3.h5 --clobber)
+  JAMTEST (twithub_u512_c u512.txt twithub.h5 tall.h5 taz4.h5 --clobber)
+  JAMTEST (twithub_u513_c u513.txt twithub.h5 tall.h5 taz5.h5 --clobber)
+
+  JAMTEST (twithub513_u10_c u10.txt twithub513.h5 tall.h5 taz6.h5 --clobber)
+  JAMTEST (twithub513_u511_c u511.txt twithub513.h5 tall.h5 taz7.h5 --clobber)
+  JAMTEST (twithub513_u512_c u512.txt twithub513.h5 tall.h5 taz8.h5 --clobber)
+  JAMTEST (twithub513_u513_c u513.txt twithub513.h5 tall.h5 taz9.h5 --clobber)
+
+  JAMTEST_NONE (N_twithub_u10_c u10.txt tall.h5 twithub.h5 tay2.h5 --clobber)
+  JAMTEST_NONE (N_twithub_u511_c u511.txt tall.h5 twithub.h5 tay3.h5 --clobber)
+  JAMTEST_NONE (N_twithub_u512_c u512.txt tall.h5 twithub.h5 tay4.h5 --clobber)
+  JAMTEST_NONE (N_twithub_u513_c u513.txt tall.h5 twithub.h5 tay5.h5 --clobber)
+
+  JAMTEST_NONE (N_twithub513_u10_c u10.txt tall.h5 twithub513.h5 tay6.h5 --clobber)
+  JAMTEST_NONE (N_twithub513_u511_c u511.txt tall.h5 twithub513.h5 tay7.h5 --clobber)
+  JAMTEST_NONE (N_twithub513_u512_c u512.txt tall.h5 twithub513.h5 tay8.h5 --clobber)
+  JAMTEST_NONE (N_twithub513_u513_c u513.txt tall.h5 twithub513.h5 tay9.h5 --clobber)
 
 #-------------------------------
 # Testing h5unjam
@@ -496,32 +468,14 @@ IF (BUILD_TESTING)
   # help page
   TEST_H5UNJAM_OUTPUT(h5unjam-help 0 -h)
 
-  SETUP (twithub_tall twithub.h5 tai1.h5)
-  UNJAMTEST (twithub_tall tai1.h5 o10.txt taa1.h5)
-  CHECKFILE (twithub_tall tall.h5 taa1.h5)
-#  CLEANUP (twithub_tall taa1.h5 tai1.h5 o10.txt)
-  SETUP (twithub513_tall twithub513.h5 tai2.h5)
-  UNJAMTEST (twithub513_tall tai2.h5 o512.txt taa2.h5)
-  CHECKFILE (twithub513_tall tall.h5 taa2.h5)
-#  CLEANUP (twithub513_tall taa2.h5 tai2.h5 o512.txt)
-
-  SETUP (N_twithub_tall twithub.h5 tai3.h5)
-  UNJAMTEST (N_twithub_tall tai3.h5 NONE taa3.h5)
-  CHECKFILE (N_twithub_tall tall.h5 taa3.h5)
-#  CLEANUP (N_twithub_tall taa3.h5 tai3.h5)
-  SETUP (N_twithub513_tall twithub513.h5 tai4.h5)
-  UNJAMTEST (N_twithub513_tall tai4.h5 NONE taa4.h5)
-  CHECKFILE (N_twithub513_tall tall.h5 taa4.h5)
-#  CLEANUP (N_twithub513_tall taa4.h5 tai4.h5)
-
-  SETUP (D_twithub_tall twithub.h5 taj2.h5)
-  UNJAMTEST (D_twithub_tall taj2.h5 NONE tac2.h5 --delete)
-  CHECKFILE (D_twithub_tall tall.h5 tac2.h5)
-#  CLEANUP (D_twithub_tall tac2.h5 taj2.h5)
-  SETUP (D_twithub513_tall twithub513.h5 taj3.h5)
-  UNJAMTEST (D_twithub513_tall taj3.h5 NONE tac3.h5 --delete)
-  CHECKFILE (D_twithub513_tall tall.h5 tac3.h5)
-#  CLEANUP (D_twithub513_tall tac3.h5 taj3.h5)
+  UNJAMTEST (twithub_tall twithub.h5 tai1.h5 o10.txt tall.h5 taa1.h5)
+  UNJAMTEST (twithub513_tall twithub513.h5 tai2.h5 o512.txt tall.h5 taa2.h5)
+
+  UNJAMTEST (N_twithub_tall twithub.h5 tai3.h5 NONE tall.h5 taa3.h5)
+  UNJAMTEST (N_twithub513_tall twithub513.h5 tai4.h5 NONE tall.h5 taa4.h5)
+
+  UNJAMTEST (D_twithub_tall twithub.h5 taj2.h5 NONE tall.h5 tac2.h5 --delete)
+  UNJAMTEST (D_twithub513_tall twithub513.h5 taj3.h5 NONE tall.h5 tac3.h5 --delete)
 
 ENDIF (BUILD_TESTING)
 
diff --git a/tools/h5jam/testh5jam.sh.in b/tools/h5jam/testh5jam.sh.in
index b2c6bec..86edbee 100644
--- a/tools/h5jam/testh5jam.sh.in
+++ b/tools/h5jam/testh5jam.sh.in
@@ -377,7 +377,7 @@ JAMTEST() {
 			compare_orig="xxofile.h5"
 			cleanup="$cleanup $compare_orig"
 		else
-			# output goes to $4,  compare ofile to ubfile
+			# output goes to $3,  compare ofile to ubfile
 			ofile="$3"
 			compare_test="$ofile"
 			compare_orig="$ifile"
@@ -539,19 +539,22 @@ JAMTEST $TESTDIR/u513.txt $TESTDIR/tall.h5 ta5.h5
 CHECKFILE $TESTDIR/tall.h5 ta5.h5
 CLEANUP ta5.h5
 
-SETUP $TESTDIR/tall.h5 ta.h5
-JAMTEST $TESTDIR/u10.txt ta.h5 
-CHECKFILE $TESTDIR/tall.h5 ta.h5
-SETUP $TESTDIR/tall.h5 ta.h5
-JAMTEST $TESTDIR/u511.txt ta.h5 
-CHECKFILE $TESTDIR/tall.h5 ta.h5
-SETUP $TESTDIR/tall.h5 ta.h5
-JAMTEST $TESTDIR/u512.txt ta.h5 
-CHECKFILE $TESTDIR/tall.h5 ta.h5
-SETUP $TESTDIR/tall.h5 ta.h5
-JAMTEST $TESTDIR/u513.txt ta.h5 
-CHECKFILE $TESTDIR/tall.h5 ta.h5
-CLEANUP ta.h5
+SETUP $TESTDIR/tall.h5 ta6.h5
+JAMTEST $TESTDIR/u10.txt ta6.h5 
+CHECKFILE $TESTDIR/tall.h5 ta6.h5
+CLEANUP ta6.h5
+SETUP $TESTDIR/tall.h5 ta7.h5
+JAMTEST $TESTDIR/u511.txt ta7.h5 
+CHECKFILE $TESTDIR/tall.h5 ta7.h5
+CLEANUP ta7.h5
+SETUP $TESTDIR/tall.h5 ta8.h5
+JAMTEST $TESTDIR/u512.txt ta8.h5 
+CHECKFILE $TESTDIR/tall.h5 ta8.h5
+CLEANUP ta8.h5
+SETUP $TESTDIR/tall.h5 ta9.h5
+JAMTEST $TESTDIR/u513.txt ta9.h5 
+CHECKFILE $TESTDIR/tall.h5 ta9.h5
+CLEANUP ta9.h5
 
 JAMTEST $TESTDIR/u10.txt $TESTDIR/twithub.h5 tax2.h5
 CHECKFILE $TESTDIR/tall.h5 tax2.h5
diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in
index a732ffb..dc90426 100644
--- a/tools/h5repack/h5repack.sh.in
+++ b/tools/h5repack/h5repack.sh.in
@@ -189,7 +189,9 @@ SKIP() {
 DIFFTEST() 
 {
     VERIFY h5diff output $@
-    $RUNSERIAL $H5DIFF_BIN -q  "$@" 
+    (
+        $RUNSERIAL $H5DIFF_BIN -q  "$@" 
+    )
     RET=$?
     if [ $RET != 0 ] ; then
          echo "*FAILED*"
@@ -208,44 +210,57 @@ DIFFTEST()
 TOOLTEST() 
 {
     echo $@
-    TOOLTEST_MAIN $@
-    outfile=$TESTDIR/out.$1
-    rm -f $outfile
-}
+    infile=$TESTDIR/$2
+    outfile=$TESTDIR/out-$1.$2
+    shift
+    shift
 
-# TOOLTEST main function, doesn't delete $output file
-TOOLTEST_MAIN() 
-{
     # Run test.
     TESTING $H5REPACK $@
-
-    infile=$TESTDIR/$1
-    outfile=$TESTDIR/out.$1
-    shift
-    $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+    (
+        $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+    )
     RET=$?
     if [ $RET != 0 ] ; then
-	echo "*FAILED*"
-	nerrors="`expr $nerrors + 1`"
+        echo "*FAILED*"
+        nerrors="`expr $nerrors + 1`"
     else
-	echo " PASSED"
-	DIFFTEST $infile $outfile
+        echo " PASSED"
+        DIFFTEST $infile $outfile
     fi
+    rm -f $outfile
 }
 
 #------------------------------------------
 # Verifying layouts of a dataset 
 VERIFY_LAYOUT_DSET()
 {
-    outfile=$TESTDIR/out.$1
-    layoutfile=$TESTDIR/layout.$1
-    dset=$2
-    expectlayout=$3
+    layoutfile=$TESTDIR/layout-$1.$2
+    dset=$3
+    expectlayout=$4
+    infile=$TESTDIR/$2
+    outfile=$TESTDIR/out-$1.$2
+    shift
+    shift
+    shift
+    shift
+    
+    $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+    RET=$?
+    if [ $RET != 0 ] ; then
+        echo "*FAILED*"
+        nerrors="`expr $nerrors + 1`"
+    else
+        echo " PASSED"
+        DIFFTEST $infile $outfile
+    fi
     
     #---------------------------------
     # check the layout from a dataset
     VERIFY  "a dataset layout"
-    $RUNSERIAL $H5DUMP_BIN -d $dset -pH $outfile > $layoutfile
+    (
+        $RUNSERIAL $H5DUMP_BIN -d $dset -pH $outfile > $layoutfile
+    )
     $GREP $expectlayout $layoutfile > /dev/null
     if [ $? -eq 0 ]; then
         echo " PASSED"
@@ -262,17 +277,35 @@ VERIFY_LAYOUT_DSET()
 # Verifying layouts from entire file
 VERIFY_LAYOUT_ALL()
 {
-    outfile=$TESTDIR/out.$1
-    layoutfile=$TESTDIR/layout.$1
-    expectlayout=$2
+    outfile=$TESTDIR/out-$1.$2
+    layoutfile=$TESTDIR/layout-$1.$2
+    expectlayout=$3
+    shift
+    shift
+    shift
+    
+    $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+    RET=$?
+    if [ $RET != 0 ] ; then
+        echo "*FAILED*"
+        nerrors="`expr $nerrors + 1`"
+    else
+        echo " PASSED"
+        DIFFTEST $infile $outfile
+    fi
+    
     
     #---------------------------------
     # check the layout from a dataset
     # check if the other layouts still exsit
     VERIFY  "layouts"
+    (
         # if CONTIGUOUS
         if [ $expectlayout = "CONTIGUOUS" ]; then
-            $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
+            TESTING $H5DUMP_BIN -pH $outfile
+            (
+                $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
+            )
             $GREP "COMPACT" $layoutfile  > /dev/null
             if [ $? -eq 0 ]; then
                 echo " FAILED"
@@ -287,7 +320,10 @@ VERIFY_LAYOUT_ALL()
         else    
             # if COMPACT
             if [ $expectlayout = "COMPACT" ]; then
-                $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
+                TESTING $H5DUMP_BIN -pH $outfile
+                (
+                    $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
+                )
                 $GREP "CHUNKED" $layoutfile  > /dev/null
                 if [ $? -eq 0 ]; then
                     echo " FAILED"
@@ -302,7 +338,10 @@ VERIFY_LAYOUT_ALL()
             else
                 # if CHUNKED
                 if [ $expectlayout = "CHUNKED" ]; then
-                    $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
+                    TESTING $H5DUMP_BIN -pH $outfile
+                    (
+                        $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
+                    )
                     $GREP "CONTIGUOUS" $layoutfile  > /dev/null
                     if [ $? -eq 0 ]; then
                         echo " FAILED"
@@ -317,6 +356,7 @@ VERIFY_LAYOUT_ALL()
                 fi
            fi
         fi
+    )
 
     # clean up tmp files
     rm -f $outfile
@@ -327,13 +367,16 @@ VERIFY_LAYOUT_ALL()
 #
 TOOLTEST0() 
 {
+    infile=$TESTDIR/$2
+    outfile=$TESTDIR/out-$1.$2
+    shift
+    shift
+
     # Run test.
     TESTING $H5REPACK $@
-
-    infile=$TESTDIR/$1
-    outfile=$TESTDIR/out.$1
-    shift
-    $RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile "$@"
+    (
+        $RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile "$@"
+    )
     RET=$?
     if [ $RET != 0 ] ; then
         echo "*FAILED*"
@@ -351,13 +394,16 @@ TOOLTEST0()
 #
 TOOLTEST1() 
 {
+    infile=$TESTDIR/$2
+    outfile=$TESTDIR/out-$1.$2
+    shift
+    shift
+
     # Run test.
     TESTING $H5REPACK $@
-
-    infile=$TESTDIR/$1
-    outfile=$TESTDIR/out.$1
-    shift
-    $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+    (
+        $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+    )
     RET=$?
     if [ $RET != 0 ] ; then
 	echo "*FAILED*"
@@ -374,16 +420,20 @@ TOOLTEST1()
 #
 TOOLTESTV() 
 {
-    # Run test.
-    TESTING $H5REPACK $@
-    expect="$TESTDIR/$1.ddl"
-    actual="$TESTDIR/`basename $1 .ddl`.out"
-    actual_err="$TESTDIR/`basename $1 .ddl`.err"
+    expect="$TESTDIR/$2.ddl"
+    actual="$TESTDIR/`basename $2 .ddl`.out"
+    actual_err="$TESTDIR/`basename $2 .ddl`.err"
 
-    infile=$TESTDIR/$1
-    outfile=$TESTDIR/out.$1
+    infile=$TESTDIR/$2
+    outfile=$TESTDIR/out-$1.$2
+    shift
     shift
-    $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile >$actual 2>$actual_err
+    
+    # Run test.
+    TESTING $H5REPACK $@
+    (
+        $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+    ) >$actual 2>$actual_err
     RET=$?
     if [ $RET != 0 ] ; then
 	echo "*FAILED*"
@@ -427,17 +477,41 @@ TOOLTESTV()
 # Verify the output file of second run is larger than the one of 1st run.
 TOOLTEST_META()
 {
-    input_file=$1
-    outfile="$TESTDIR/out.$1"
+    infile=$TESTDIR/$2
+    outfile=$TESTDIR/out-$1.$2
+    shift
+    shift
 
-    # Use TOOLTEST_MAIN to run because it does not remove the output file.
-    # 1st run, without metadata option
-    TOOLTEST_MAIN $1
+    # Run test.
+    TESTING $H5REPACK $@
+    (
+        $RUNSERIAL $H5REPACK_BIN $infile $outfile
+    )
+    RET=$?
+    if [ $RET != 0 ] ; then
+        echo "*FAILED*"
+        nerrors="`expr $nerrors + 1`"
+    else
+        echo " PASSED"
+        DIFFTEST $infile $outfile
+    fi
     # get the size of the first output file
     size1=`wc -c $outfile | cut -d' ' -f1`
 
     # 2nd run with metadata option
-    TOOLTEST_MAIN $*
+    # Run test.
+    TESTING $H5REPACK $@
+    (
+        $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+    )
+    RET=$?
+    if [ $RET != 0 ] ; then
+        echo "*FAILED*"
+        nerrors="`expr $nerrors + 1`"
+    else
+        echo " PASSED"
+        DIFFTEST $infile $outfile
+    fi
     # get the size of the second output file
     size2=`wc -c $outfile | cut -d' ' -f1`
 
@@ -492,12 +566,12 @@ fi
 COPY_TESTFILES_TO_TESTDIR
 
 # copy files (these files have no filters) 
-TOOLTEST h5repack_fill.h5
-TOOLTEST h5repack_objs.h5
-TOOLTEST h5repack_attr.h5
-TOOLTEST h5repack_hlink.h5
-TOOLTEST h5repack_layout.h5
-TOOLTEST h5repack_early.h5
+TOOLTEST fill h5repack_fill.h5
+TOOLTEST objs h5repack_objs.h5
+TOOLTEST attr h5repack_attr.h5
+TOOLTEST hlink h5repack_hlink.h5
+TOOLTEST layout h5repack_layout.h5
+TOOLTEST early h5repack_early.h5
 
 
 # use h5repack_layout.h5 to write some filters  (this file has  no filters)
@@ -507,7 +581,7 @@ arg="h5repack_layout.h5 -f dset1:GZIP=1  -l dset1:CHUNK=20x10"
 if test  $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST gzip_individual $arg
 fi
   
 # gzip for all 
@@ -515,7 +589,7 @@ arg="h5repack_layout.h5 -f GZIP=1"
 if test  $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST gzip_all $arg
 fi
 
 # szip with individual object
@@ -523,7 +597,7 @@ arg="h5repack_layout.h5 -f dset2:SZIP=8,EC  -l dset2:CHUNK=20x10"
 if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg 
+ TOOLTEST szip_individual $arg 
 fi
 
 # szip for all
@@ -531,7 +605,7 @@ arg="h5repack_layout.h5 -f SZIP=8,NN"
 if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg 
+ TOOLTEST szip_all $arg 
 fi
 
 # shuffle with individual object
@@ -539,7 +613,7 @@ arg="h5repack_layout.h5 -f dset2:SHUF  -l dset2:CHUNK=20x10"
 if test $USE_FILTER_SHUFFLE != "yes"  ; then
  SKIP $arg
 else
- TOOLTEST $arg 
+ TOOLTEST shuffle_individual $arg 
 fi
   
 
@@ -548,7 +622,7 @@ arg="h5repack_layout.h5 -f SHUF"
 if test $USE_FILTER_SHUFFLE != "yes"  ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST shuffle_all $arg
 fi
   
 # fletcher32  with individual object
@@ -556,7 +630,7 @@ arg="h5repack_layout.h5 -f dset2:FLET  -l dset2:CHUNK=20x10"
 if test $USE_FILTER_FLETCHER32 != "yes"  ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST fletcher_individual $arg
 fi
 
 # fletcher32 for all
@@ -564,7 +638,7 @@ arg="h5repack_layout.h5 -f FLET"
 if test $USE_FILTER_FLETCHER32 != "yes"  ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST fletcher_all $arg
 fi
 
 # all filters
@@ -572,7 +646,7 @@ arg="h5repack_layout.h5 -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:
 if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST all_filters $arg
 fi
 
 # verbose gzip with individual object
@@ -581,7 +655,7 @@ if test  $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
  # compare output
- TOOLTESTV $arg
+ TOOLTESTV gzip_verbose_filters $arg
 fi
   
 ###########################################################
@@ -593,7 +667,7 @@ arg="h5repack_szip.h5"
 if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST szip_copy $arg
 fi
   
 # szip remove
@@ -601,7 +675,7 @@ arg="h5repack_szip.h5 --filter=dset_szip:NONE"
 if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST szip_remove $arg
 fi
   
 # deflate copy
@@ -609,7 +683,7 @@ arg="h5repack_deflate.h5"
 if test $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST deflate_copy $arg
 fi
 
 # deflate remove
@@ -617,7 +691,7 @@ arg="h5repack_deflate.h5 -f dset_deflate:NONE"
 if test $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST deflate_remove $arg
 fi
     
 # shuffle copy
@@ -625,7 +699,7 @@ arg="h5repack_shuffle.h5"
 if test $USE_FILTER_SHUFFLE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST shuffle_copy $arg
 fi
 
 # shuffle remove
@@ -633,7 +707,7 @@ arg="h5repack_shuffle.h5 -f dset_shuffle:NONE"
 if test $USE_FILTER_SHUFFLE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST shuffle_remove $arg
 fi
 
 # fletcher32 copy
@@ -641,7 +715,7 @@ arg="h5repack_fletcher.h5"
 if test $USE_FILTER_FLETCHER32 != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST fletcher_copy $arg
 fi
 
 # fletcher32 remove
@@ -649,7 +723,7 @@ arg="h5repack_fletcher.h5 -f dset_fletcher32:NONE"
 if test $USE_FILTER_FLETCHER32 != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST fletcher_remove $arg
 fi        
 
 # nbit copy
@@ -657,7 +731,7 @@ arg="h5repack_nbit.h5"
 if test $USE_FILTER_NBIT != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST nbit_copy $arg
 fi
 
 # nbit remove
@@ -665,7 +739,7 @@ arg="h5repack_nbit.h5 -f dset_nbit:NONE"
 if test $USE_FILTER_NBIT != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST nbit_remove $arg
 fi        
 
 # nbit add
@@ -673,7 +747,7 @@ arg="h5repack_nbit.h5 -f dset_int31:NBIT"
 if test $USE_FILTER_NBIT != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST nbit_add $arg
 fi
 
 # scaleoffset copy
@@ -681,7 +755,7 @@ arg="h5repack_soffset.h5"
 if test $USE_FILTER_SCALEOFFSET != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST scale_copy $arg
 fi
 
 # scaleoffset add
@@ -689,7 +763,7 @@ arg="h5repack_soffset.h5 -f dset_none:SOFF=31,IN"
 if test $USE_FILTER_SCALEOFFSET != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST scale_add $arg
 fi
 
 # scaleoffset remove
@@ -697,7 +771,7 @@ arg="h5repack_soffset.h5 -f dset_scaleoffset:NONE"
 if test $USE_FILTER_SCALEOFFSET != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST scale_remove $arg
 fi        
 
 # remove all  filters
@@ -705,7 +779,7 @@ arg="h5repack_filters.h5 -f NONE"
 if test $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SHUFFLE != "yes"  -o $USE_FILTER_NBIT != "yes"  -o $USE_FILTER_SCALEOFFSET != "yes"  ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST remove_all $arg
 fi
 
 #filter conversions
@@ -714,14 +788,14 @@ arg="h5repack_deflate.h5 -f dset_deflate:SZIP=8,NN"
 if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg 
+ TOOLTEST deflate_convert $arg 
 fi
 
 arg="h5repack_szip.h5 -f dset_szip:GZIP=1"
 if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes"  -o $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg 
+ TOOLTEST szip_convert $arg 
 fi
 
 
@@ -730,7 +804,7 @@ arg="h5repack_layout.h5 -f GZIP=1 -m 1024"
 if test $USE_FILTER_DEFLATE != "yes"  ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST deflate_limit $arg
 fi
 
 #file
@@ -738,67 +812,50 @@ arg="h5repack_layout.h5 -e $TESTDIR/h5repack.info"
 if test $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg 
 else
- TOOLTEST $arg 
+ TOOLTEST deflate_file $arg 
 fi
 
 #########################################################
 # layout options (these files have no filters)
 #########################################################
-TOOLTEST_MAIN h5repack_layout.h5 --layout dset2:CHUNK=20x10
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset2 CHUNKED
+VERIFY_LAYOUT_DSET dset2_chunk_20x10 h5repack_layout.h5 dset2 CHUNKED --layout dset2:CHUNK=20x10
 
-TOOLTEST_MAIN h5repack_layout.h5 -l CHUNK=20x10
-VERIFY_LAYOUT_ALL h5repack_layout.h5 CHUNKED
+VERIFY_LAYOUT_ALL chunk_20x10 h5repack_layout.h5 CHUNKED -l CHUNK=20x10
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset2:CONTI
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset2 CONTIGUOUS
+VERIFY_LAYOUT_DSET dset2_conti h5repack_layout.h5 dset2 CONTIGUOUS -l dset2:CONTI
 
-TOOLTEST_MAIN h5repack_layout.h5 -l CONTI
-VERIFY_LAYOUT_ALL h5repack_layout.h5 CONTIGUOUS
+VERIFY_LAYOUT_ALL conti h5repack_layout.h5 CONTIGUOUS -l CONTI
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset2:COMPA
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset2 COMPACT
+VERIFY_LAYOUT_DSET dset2_compa h5repack_layout.h5 dset2 COMPACT -l dset2:COMPA
 
-TOOLTEST_MAIN h5repack_layout.h5 -l COMPA
-VERIFY_LAYOUT_ALL h5repack_layout.h5 COMPACT
+VERIFY_LAYOUT_ALL compa h5repack_layout.h5 COMPACT -l COMPA
 
 ################################################################
 # layout conversions (file has no filters)
 ###############################################################
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset_compact:CONTI
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_compact CONTIGUOUS
+VERIFY_LAYOUT_DSET dset_compa_conti h5repack_layout.h5 dset_compact CONTIGUOUS -l dset_compact:CONTI
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset_compact:CHUNK=2x5
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_compact CHUNKED
+VERIFY_LAYOUT_DSET dset_compa_chunk h5repack_layout.h5 dset_compact CHUNKED -l dset_compact:CHUNK=2x5
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset_compact:COMPA
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_compact COMPACT
+VERIFY_LAYOUT_DSET dset_compa_compa h5repack_layout.h5 dset_compact COMPACT -l dset_compact:COMPA
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset_contiguous:COMPA
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_contiguous COMPACT
+VERIFY_LAYOUT_DSET dset_conti_compa h5repack_layout.h5 dset_contiguous COMPACT -l dset_contiguous:COMPA
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset_contiguous:CHUNK=3x6
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_contiguous CHUNKED
+VERIFY_LAYOUT_DSET dset_conti_chunk h5repack_layout.h5 dset_contiguous CHUNKED -l dset_contiguous:CHUNK=3x6
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset_contiguous:CONTI
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_contiguous CONTIGUOUS
+VERIFY_LAYOUT_DSET dset_conti_conti h5repack_layout.h5 dset_contiguous CONTIGUOUS -l dset_contiguous:CONTI
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset_chunk:COMPA
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_chunk COMPACT
+VERIFY_LAYOUT_DSET chunk_compa h5repack_layout.h5 dset_chunk COMPACT -l dset_chunk:COMPA
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset_chunk:CONTI
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_chunk CONTIGUOUS
+VERIFY_LAYOUT_DSET chunk_conti h5repack_layout.h5 dset_chunk CONTIGUOUS -l dset_chunk:CONTI
 
-TOOLTEST_MAIN h5repack_layout.h5 -l dset_chunk:CHUNK=18x13
-VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_chunk CHUNKED
+VERIFY_LAYOUT_DSET chunk_18x13 h5repack_layout.h5 dset_chunk CHUNKED -l dset_chunk:CHUNK=18x13
 
 # test convert small size dataset ( < 1k) to compact layout without -m
-TOOLTEST_MAIN h5repack_layout2.h5 -l contig_small:COMPA
-VERIFY_LAYOUT_DSET h5repack_layout2.h5 contig_small COMPACT
+VERIFY_LAYOUT_DSET contig_small_compa h5repack_layout2.h5 contig_small COMPACT -l contig_small:COMPA
 
-TOOLTEST_MAIN h5repack_layout2.h5 -l chunked_small_fixed:COMPA
-VERIFY_LAYOUT_DSET h5repack_layout2.h5 chunked_small_fixed COMPACT
+VERIFY_LAYOUT_DSET contig_small_fixed_compa h5repack_layout2.h5 chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA
 
 #--------------------------------------------------------------------------- 
 # Test file contains chunked datasets (need multiple dsets) with 
@@ -806,17 +863,14 @@ VERIFY_LAYOUT_DSET h5repack_layout2.h5 chunked_small_fixed COMPACT
 # Use first dset to test.
 #---------------------------------------------------------------------------
 # chunk to chunk - specify chunk dim bigger than any current dim
-TOOLTEST_MAIN h5repack_layout3.h5 -l chunk_unlimit1:CHUNK=100x300
-VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit1 CHUNK
+VERIFY_LAYOUT_DSET chunk2chunk h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300
 
 # chunk to contiguous 
-TOOLTEST_MAIN h5repack_layout3.h5 -l chunk_unlimit1:CONTI
-VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit1 CONTI
+VERIFY_LAYOUT_DSET chunk2conti h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI
 
 # chunk to compact - convert big dataset (should be > 64k) for this purpose, 
 # should remain as original layout (chunk)
-TOOLTEST_MAIN h5repack_layout3.h5 -l chunk_unlimit1:COMPA
-VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit1 CHUNK
+VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA
 
 #--------------------------------------------------------------------------
 # Test -f for some specific cases. Chunked dataset with unlimited max dims.
@@ -826,24 +880,22 @@ VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit1 CHUNK
 # - should not change max dims from unlimit
 
 # chunk dim is bigger than dataset dim. ( dset size < 64k )
-TOOLTEST_MAIN h5repack_layout3.h5 -f chunk_unlimit1:NONE
-VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED
+VERIFY_LAYOUT_DSET error1 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED -f chunk_unlimit1:NONE
 # chunk dim is bigger than dataset dim. ( dset size > 64k )
-TOOLTEST_MAIN h5repack_layout3.h5 -f chunk_unlimit2:NONE
-VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED
+VERIFY_LAYOUT_DSET error2 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED -f chunk_unlimit2:NONE
 
 # chunk dims are smaller than dataset dims. ( dset size < 64k )
-TOOLTEST_MAIN h5repack_layout3.h5  -f chunk_unlimit3:NONE
-VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED
+#TOOLTEST_MAIN h5repack_layout3.h5  -f chunk_unlimit3:NONE
+VERIFY_LAYOUT_DSET error3 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f chunk_unlimit3:NONE
 
 # file input - should not fail
-TOOLTEST h5repack_layout3.h5 -f NONE
+TOOLTEST error4 h5repack_layout3.h5 -f NONE
 
 # Native option
 # Do not use FILE1, as the named dtype will be converted to native, and h5diff will
 # report a difference.
-TOOLTEST h5repack_fill.h5 -n
-TOOLTEST h5repack_attr.h5 -n
+TOOLTEST native_fill h5repack_fill.h5 -n
+TOOLTEST native_attr h5repack_attr.h5 -n
 
 
 # latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters)
@@ -851,8 +903,7 @@ arg="h5repack_layout.h5 --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --nati
 if test $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST_MAIN $arg
- VERIFY_LAYOUT_ALL h5repack_layout.h5 CHUNKED
+ VERIFY_LAYOUT_ALL layout_long_switches h5repack_layout.h5 CHUNKED --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]
 fi
 
 # latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
@@ -860,8 +911,7 @@ arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dty
 if test $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST_MAIN $arg
- VERIFY_LAYOUT_ALL h5repack_layout.h5 CHUNKED
+ VERIFY_LAYOUT_ALL layout_short_switches h5repack_layout.h5 CHUNKED -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]
 fi
 
 # several global filters
@@ -870,7 +920,7 @@ arg="h5repack_layout.h5 --filter GZIP=1 --filter SHUF"
 if test $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SHUFFLE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST $arg
+ TOOLTEST global_filters $arg
 fi
 
 # syntax of -i infile -o outfile
@@ -879,46 +929,47 @@ arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dty
 if test $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST0 $arg
+ TOOLTEST0 old_style_layout_short_switches $arg
 fi 
 
 # add a userblock to file
-arg="h5repack_objs.h5 -u ublock.bin -b 2048"
-TOOLTEST $arg
+arg="h5repack_objs.h5 -u $TESTDIR/ublock.bin -b 2048"
+TOOLTEST add_userblock $arg
 
 # add alignment
 arg="h5repack_objs.h5 -t 1 -a 1 "
-TOOLTEST $arg
+TOOLTEST add_alignment $arg
 
 # Check repacking file with old version of layout message (should get upgraded
 #       to new version and be readable, etc.)
-TOOLTEST h5repack_layouto.h5
+TOOLTEST pgrade_layout h5repack_layouto.h5
 
 # test for datum size > H5TOOLS_MALLOCSIZE
-TOOLTEST h5repack_objs.h5 -f GZIP=1
+TOOLTEST gt_mallocsize h5repack_objs.h5 -f GZIP=1
 
 # Check repacking file with committed datatypes in odd configurations
-TOOLTEST h5repack_named_dtypes.h5
+TOOLTEST committed_dt h5repack_named_dtypes.h5
 
 # tests family driver (file is located in common testfiles folder, uses TOOLTEST1
-TOOLTEST1 tfamily%05d.h5
+TOOLTEST1 family tfamily%05d.h5
 
 # test various references (bug 1814 and 1726)
-TOOLTEST h5repack_refs.h5
+TOOLTEST bug1814 h5repack_refs.h5
 
 # test attribute with various references (bug1797 / HDFFV-5932)
 # the references in attribute of compund or vlen datatype 
-TOOLTEST h5repack_attr_refs.h5 
+TOOLTEST HDFFV-5932 h5repack_attr_refs.h5 
 
 # Add test for memory leak in attirbute. This test is verified by CTEST.   
 # 1. leak from vlen string  
 # 2. leak from compound type without reference member
 # (HDFFV-7840, )
 # Note: this test is experimental for sharing test file among tools
-TOOLTEST h5diff_attr1.h5
+TOOLTEST HDFFV-7840 h5diff_attr1.h5
 
 # tests for metadata block size option 
-TOOLTEST_META h5repack_layout.h5 --metadata_block_size=8192
+TOOLTEST_META meta_short h5repack_layout.h5 -M 8192
+TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192
 
 if test $nerrors -eq 0 ; then
     echo "All $TESTNAME tests passed."