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authorQuincey Koziol <koziol@hdfgroup.org>2014-03-25 15:58:48 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2014-03-25 15:58:48 (GMT)
commita7d3f5b5b1591c6cbf77b07383fc6de51e11d0b1 (patch)
treeea5b56bde574d082b6f82dd36d307aa7426eb639 /tools
parent708e8077c2c1bc5c1a28d8804e6a0ee670fe4600 (diff)
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[svn-r24894] Description:
Bring r24869 & r24875 from trunk to 1.8 branch: Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (daily tested on trunk)
Diffstat (limited to 'tools')
-rw-r--r--tools/h5repack/h5repack_refs.c199
1 files changed, 95 insertions, 104 deletions
diff --git a/tools/h5repack/h5repack_refs.c b/tools/h5repack/h5repack_refs.c
index 71615f2..b844280 100644
--- a/tools/h5repack/h5repack_refs.c
+++ b/tools/h5repack/h5repack_refs.c
@@ -193,8 +193,6 @@ int do_copy_refobjs(hid_t fidin,
goto error;
if(options->verbose)
{
-
-
printf(FORMAT_OBJ,"dset",travt->objs[i].name );
printf("object <%s> object reference created to <%s>\n",
travt->objs[i].name,
@@ -468,7 +466,7 @@ static int copy_refs_attr(hid_t loc_in,
hbool_t is_ref=0, is_ref_vlen=0, is_ref_array=0, is_ref_comp=0;
void *refbuf = NULL;
void *buf = NULL;
- const char* refname;
+ const char* refname = NULL;
int *ref_comp_index = NULL;
size_t *ref_comp_size = NULL;
int ref_comp_field_n = 0;
@@ -477,8 +475,7 @@ static int copy_refs_attr(hid_t loc_in,
if(H5Oget_info(loc_in, &oinfo) < 0)
goto error;
- for(u = 0; u < (unsigned)oinfo.num_attrs; u++)
- {
+ for(u = 0; u < (unsigned)oinfo.num_attrs; u++) {
is_ref = is_ref_vlen = is_ref_array = is_ref_comp = 0;
/* open attribute */
@@ -499,56 +496,55 @@ static int copy_refs_attr(hid_t loc_in,
is_ref = (type_class == H5T_REFERENCE);
- if (type_class == H5T_VLEN ) {
- hid_t base_type = -1;
- base_type = H5Tget_super(ftype_id);
- is_ref_vlen = (H5Tget_class(base_type)==H5T_REFERENCE);
- msize = H5Tget_size(base_type);
- H5Tclose(base_type);
+ if(type_class == H5T_VLEN ) {
+ hid_t base_type;
+
+ base_type = H5Tget_super(ftype_id);
+ is_ref_vlen = (H5Tget_class(base_type)==H5T_REFERENCE);
+ msize = H5Tget_size(base_type);
+ H5Tclose(base_type);
}
+ else if(type_class == H5T_ARRAY ) {
+ hid_t base_type;
- if (type_class == H5T_ARRAY ) {
- hid_t base_type = -1;
- base_type = H5Tget_super(ftype_id);
- is_ref_array = (H5Tget_class(base_type)==H5T_REFERENCE);
- msize = H5Tget_size(base_type);
- H5Tclose(base_type);
+ base_type = H5Tget_super(ftype_id);
+ is_ref_array = (H5Tget_class(base_type)==H5T_REFERENCE);
+ msize = H5Tget_size(base_type);
+ H5Tclose(base_type);
}
+ else if(type_class == H5T_COMPOUND) {
+ int nmembers = H5Tget_nmembers(ftype_id) ;
- if (type_class == H5T_COMPOUND) {
- int nmembers = H5Tget_nmembers(ftype_id) ;
- if (nmembers < 1)
- goto error;
+ if (nmembers < 1)
+ goto error;
ref_comp_index = (int *)HDmalloc(nmembers*sizeof (int));
ref_comp_size = (size_t *)HDmalloc(nmembers*sizeof(ref_comp_size));
ref_comp_field_n = 0;
- for (i=0; i<(unsigned)nmembers; i++) {
- hid_t mtid = H5Tget_member_type( ftype_id, i );
- if ((H5Tget_class(mtid)==H5T_REFERENCE)) {
- ref_comp_index[ref_comp_field_n] = i;
- ref_comp_size[ref_comp_field_n] = H5Tget_size(mtid);
- ref_comp_field_n++;
- }
- H5Tclose(mtid);
- }
+ for (i=0; i<(unsigned)nmembers; i++) {
+ hid_t mtid = H5Tget_member_type( ftype_id, i );
+
+ if ((H5Tget_class(mtid)==H5T_REFERENCE)) {
+ ref_comp_index[ref_comp_field_n] = i;
+ ref_comp_size[ref_comp_field_n] = H5Tget_size(mtid);
+ ref_comp_field_n++;
+ }
+ H5Tclose(mtid);
+ }
/* if compound don't contain reference type member, free the above
* mallocs. Otherwise there can be memory leaks by the 'continue'
* statement below. */
- if (!ref_comp_field_n)
- {
- if (ref_comp_index)
- {
- HDfree(ref_comp_index);
- ref_comp_index = NULL;
+ if (!ref_comp_field_n) {
+ if (ref_comp_index) {
+ HDfree(ref_comp_index);
+ ref_comp_index = NULL;
}
- if (ref_comp_size)
- {
+ if (ref_comp_size) {
HDfree(ref_comp_size);
- ref_comp_size = NULL;
+ ref_comp_size = NULL;
}
}
}
@@ -556,10 +552,10 @@ static int copy_refs_attr(hid_t loc_in,
is_ref_comp = (ref_comp_field_n > 0);
if (!(is_ref || is_ref_vlen || is_ref_array || is_ref_comp)) {
- H5Tclose(mtype_id);
- H5Tclose(ftype_id);
- H5Aclose(attr_id);
- continue;
+ H5Tclose(mtype_id);
+ H5Tclose(ftype_id);
+ H5Aclose(attr_id);
+ continue;
}
/* get name */
@@ -584,32 +580,30 @@ static int copy_refs_attr(hid_t loc_in,
nelmts *= dims[j];
if (is_ref_array) {
- unsigned array_rank = 0;
- hsize_t array_size = 1;
- hsize_t array_dims[H5S_MAX_RANK];
- hid_t base_type = -1;
- base_type = H5Tget_super(ftype_id);
- msize = H5Tget_size(base_type);
- H5Tclose(base_type);
-
- array_rank = H5Tget_array_ndims(mtype_id);
- H5Tget_array_dims2(mtype_id, array_dims);
+ unsigned array_rank = 0;
+ hsize_t array_size = 1;
+ hsize_t array_dims[H5S_MAX_RANK];
+ hid_t base_type;
+
+ base_type = H5Tget_super(ftype_id);
+ msize = H5Tget_size(base_type);
+ H5Tclose(base_type);
+
+ array_rank = H5Tget_array_ndims(mtype_id);
+ H5Tget_array_dims2(mtype_id, array_dims);
for(j = 0; j <array_rank; j++)
array_size *= array_dims[j];
nelmts *= array_size;
- }
+ }
if((attr_out = H5Acreate2(loc_out, name, ftype_id, space_id, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
- if (nelmts>0)
- {
+ if (nelmts>0) {
/* handle object references */
- if((is_ref || is_ref_array) && (H5R_OBJ_REF_BUF_SIZE==msize))
- {
+ if((is_ref || is_ref_array) && (H5R_OBJ_REF_BUF_SIZE==msize)) {
buf = (hobj_ref_t *)HDmalloc((unsigned)(nelmts * msize));
- if(buf == NULL)
- {
+ if(buf == NULL) {
printf("cannot read into memory\n");
goto error;
} /* end if */
@@ -617,26 +611,23 @@ static int copy_refs_attr(hid_t loc_in,
goto error;
refbuf = (hobj_ref_t *)HDcalloc((unsigned)nelmts, msize);
- if(refbuf == NULL)
- {
- printf( "cannot allocate memory\n" );
+ if(refbuf == NULL) {
+ printf("cannot allocate memory\n");
goto error;
} /* end if */
- for(i = 0; i < (unsigned)nelmts; i++)
- {
+ for(i = 0; i < (unsigned)nelmts; i++) {
if (update_ref_value(attr_id, H5R_OBJECT, &((hobj_ref_t *)buf)[i], fidout, &((hobj_ref_t *)refbuf)[i], travt)<0)
- continue;
+ continue;
if(options->verbose)
printf("object <%s> reference created to <%s>\n", name, refname);
- } /* k */
- }/*H5T_STD_REF_OBJ*/
+ } /* i */
+ } /* H5T_STD_REF_OBJ */
/* handle region references */
- else if((is_ref || is_ref_array) && (H5R_DSET_REG_REF_BUF_SIZE == msize))
- {
+ else if((is_ref || is_ref_array) && (H5R_DSET_REG_REF_BUF_SIZE == msize)) {
buf = (hdset_reg_ref_t *)HDmalloc((unsigned)(nelmts * msize));
- if(buf == NULL)
- {
+
+ if(buf == NULL) {
printf( "cannot read into memory\n" );
goto error;
} /* end if */
@@ -648,16 +639,14 @@ static int copy_refs_attr(hid_t loc_in,
*-------------------------------------------------------------------------
*/
refbuf = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)nelmts); /*init to zero */
- if(refbuf == NULL)
- {
+ if(refbuf == NULL) {
printf( "cannot allocate memory\n" );
goto error;
} /* end if */
- for(i = 0; i < (unsigned)nelmts; i++)
- {
+ for(i = 0; i < (unsigned)nelmts; i++) {
if (update_ref_value(attr_id, H5R_DATASET_REGION, &((hdset_reg_ref_t *)buf)[i], fidout, &((hdset_reg_ref_t *)refbuf)[i], travt)<0)
- continue;
+ continue;
if(options->verbose)
printf("object <%s> region reference created to <%s>\n", name, refname);
}
@@ -668,8 +657,7 @@ static int copy_refs_attr(hid_t loc_in,
buf = (hvl_t *)HDmalloc((unsigned)(nelmts * sizeof(hvl_t)));
refbuf = buf; /* reuse the read buffer for write */
- if(buf == NULL)
- {
+ if(buf == NULL) {
printf( "cannot read into memory\n" );
goto error;
} /* end if */
@@ -677,28 +665,31 @@ static int copy_refs_attr(hid_t loc_in,
if(H5Aread(attr_id, mtype_id, buf) < 0)
goto error;
- if (H5R_OBJ_REF_BUF_SIZE==msize) {
- hobj_ref_t ref_out;
- for (i=0; i<(unsigned)nelmts; i++) {
- hobj_ref_t *ptr = (hobj_ref_t *)((hvl_t *)buf)[i].p;
- for (j=0; j<((hvl_t *)buf)[i].len; j++ ) {
- if (update_ref_value(attr_id, H5R_OBJECT, &(ptr[j]), fidout, &ref_out, travt)<0)
- continue;
- HDmemcpy(&(ptr[j]), &ref_out, msize);
- }
- } /* for (i=0; i<nelems; i++) */
- } else if (H5R_DSET_REG_REF_BUF_SIZE == msize) {
-
- hdset_reg_ref_t ref_out;
- for (i=0; i<(unsigned)nelmts; i++) {
- hdset_reg_ref_t *ptr = (hdset_reg_ref_t *)((hvl_t *)buf)[i].p;
- for (j=0; j<((hvl_t *)buf)[i].len; j++ ) {
- if (update_ref_value(attr_id, H5R_DATASET_REGION, &(ptr[j]), fidout, &ref_out, travt)<0)
- continue;
- HDmemcpy(&(ptr[j]), &ref_out, msize);
- }
- } /* for (i=0; i<nelems; i++) */
- }
+ if (H5R_OBJ_REF_BUF_SIZE==msize) {
+ hobj_ref_t ref_out;
+
+ for (i=0; i<(unsigned)nelmts; i++) {
+ hobj_ref_t *ptr = (hobj_ref_t *)((hvl_t *)buf)[i].p;
+
+ for (j=0; j<((hvl_t *)buf)[i].len; j++ ) {
+ if (update_ref_value(attr_id, H5R_OBJECT, &(ptr[j]), fidout, &ref_out, travt)<0)
+ continue;
+ HDmemcpy(&(ptr[j]), &ref_out, msize);
+ }
+ } /* for (i=0; i<nelems; i++) */
+ } else if (H5R_DSET_REG_REF_BUF_SIZE == msize) {
+ hdset_reg_ref_t ref_out;
+
+ for (i=0; i<(unsigned)nelmts; i++) {
+ hdset_reg_ref_t *ptr = (hdset_reg_ref_t *)((hvl_t *)buf)[i].p;
+
+ for (j=0; j<((hvl_t *)buf)[i].len; j++ ) {
+ if (update_ref_value(attr_id, H5R_DATASET_REGION, &(ptr[j]), fidout, &ref_out, travt)<0)
+ continue;
+ HDmemcpy(&(ptr[j]), &ref_out, msize);
+ }
+ } /* for (i=0; i<nelems; i++) */
+ }
} /* else if (is_ref_vlen) */
else if (is_ref_comp) {
/* handle ref fields in a compound */
@@ -822,9 +813,9 @@ MapIdToName(hid_t refobj_id, trav_table_t *travt)
/* linear search */
for(u = 0; u < travt->nobjs; u++) {
- if(travt->objs[u].type == H5O_TYPE_DATASET ||
- travt->objs[u].type == H5O_TYPE_GROUP ||
- travt->objs[u].type == H5O_TYPE_NAMED_DATATYPE) {
+ if(travt->objs[u].type == (h5trav_type_t)H5O_TYPE_DATASET ||
+ travt->objs[u].type == (h5trav_type_t)H5O_TYPE_GROUP ||
+ travt->objs[u].type == (h5trav_type_t)H5O_TYPE_NAMED_DATATYPE) {
H5O_info_t ref_oinfo; /* Stat for the refobj id */
/* obtain information to identify the referenced object uniquely */