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| author | Allen Byrne <byrn@hdfgroup.org> | 2010-05-12 18:51:33 (GMT) |
|---|---|---|
| committer | Allen Byrne <byrn@hdfgroup.org> | 2010-05-12 18:51:33 (GMT) |
| commit | 84103cef854a758a8d5dcd270ba36e2495ed3282 (patch) | |
| tree | f11548eec782a94edda60d2f78edb7f320d8b4c2 /tools | |
| parent | 08ce72aebd7b8957a11c365f95b4bbded708e91f (diff) | |
| download | hdf5-84103cef854a758a8d5dcd270ba36e2495ed3282.zip hdf5-84103cef854a758a8d5dcd270ba36e2495ed3282.tar.gz hdf5-84103cef854a758a8d5dcd270ba36e2495ed3282.tar.bz2 | |
[svn-r18773] Add files to support building library with CMake
Tested: Local linux
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/CMakeLists.txt | 42 | ||||
| -rw-r--r-- | tools/h5copy/CMakeLists.txt | 229 | ||||
| -rw-r--r-- | tools/h5diff/CMakeLists.txt | 654 | ||||
| -rwxr-xr-x | tools/h5diff/testfiles/h5diff_101w.txt | 10 | ||||
| -rwxr-xr-x | tools/h5diff/testfiles/h5diff_102w.txt | 10 | ||||
| -rw-r--r-- | tools/h5dump/CMakeLists.txt | 611 | ||||
| -rw-r--r-- | tools/h5import/CMakeLists.txt | 39 | ||||
| -rw-r--r-- | tools/h5jam/CMakeLists.txt | 58 | ||||
| -rw-r--r-- | tools/h5ls/CMakeLists.txt | 168 | ||||
| -rw-r--r-- | tools/h5repack/CMakeLists.txt | 531 | ||||
| -rw-r--r-- | tools/h5stat/CMakeLists.txt | 122 | ||||
| -rw-r--r-- | tools/lib/CMakeLists.txt | 68 | ||||
| -rw-r--r-- | tools/misc/CMakeLists.txt | 100 |
13 files changed, 2642 insertions, 0 deletions
diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt new file mode 100644 index 0000000..8c6e41f --- /dev/null +++ b/tools/CMakeLists.txt @@ -0,0 +1,42 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +# -------------------------------------------------------------------- +# If testing was NOT enabled, then we need to build the tools library +# -------------------------------------------------------------------- +IF (NOT BUILD_TESTING) + ADD_SUBDIRECTORY (${HDF5_TOOLS_SOURCE_DIR}/lib) +ENDIF (NOT BUILD_TESTING) + +#-- Add the h5diff and test executables +ADD_SUBDIRECTORY (${HDF5_TOOLS_SOURCE_DIR}/h5diff) + +#-- Add the h5ls executable +ADD_SUBDIRECTORY (${HDF5_TOOLS_SOURCE_DIR}/h5ls) + +#-- Misc Executables +ADD_SUBDIRECTORY (${HDF5_TOOLS_SOURCE_DIR}/misc) + +#-- Add the h5import and test executables +ADD_SUBDIRECTORY (${HDF5_TOOLS_SOURCE_DIR}/h5import) + +#-- h5Repack executables +ADD_SUBDIRECTORY (${HDF5_TOOLS_SOURCE_DIR}/h5repack) + +#-- Add the h5dump and test executables +ADD_SUBDIRECTORY (${HDF5_TOOLS_SOURCE_DIR}/h5jam) + +#-- Add the h5copy and test executables +ADD_SUBDIRECTORY (${HDF5_TOOLS_SOURCE_DIR}/h5copy) + +#-- Add the h5stat and test executables +ADD_SUBDIRECTORY (${HDF5_TOOLS_SOURCE_DIR}/h5stat) + +#-- Add the h5dump and test executables +ADD_SUBDIRECTORY (${HDF5_TOOLS_SOURCE_DIR}/h5dump) diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt new file mode 100644 index 0000000..302ad49 --- /dev/null +++ b/tools/h5copy/CMakeLists.txt @@ -0,0 +1,229 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS_H5COPY) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +# -------------------------------------------------------------------- +# Add the h5copy and test executables +# -------------------------------------------------------------------- +ADD_EXECUTABLE (h5copy ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copy.c) +H5_NAMING (h5copy) +TARGET_LINK_LIBRARIES (h5copy ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +SET (H5_DEP_EXECUTABLES h5copy) + +IF (BUILD_TESTING) + IF (NOT BUILD_SHARED_LIBS) + ADD_EXECUTABLE (h5copygentest ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copygentest.c) + H5_NAMING (h5copygentest) + TARGET_LINK_LIBRARIES (h5copygentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + + #ADD_TEST (NAME h5copygentest COMMAND $<TARGET_FILE:h5copygentest>) + + SET (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} + #h5copygentest + ) + ENDIF (NOT BUILD_SHARED_LIBS) + + #-- Copy all the HDF5 files from the test directory into the source directory + SET (HDF5_REFERENCE_FILES + h5copy_extlinks_src.out.ls + h5copy_ref.out.ls + h5copytst.out.ls + ) + SET (HDF5_REFERENCE_TEST_FILES + h5copy_extlinks_src.h5 + h5copy_extlinks_trg.h5 + h5copy_ref.h5 + h5copytst.h5 + ) + + FILE (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + FOREACH (ls_file ${HDF5_REFERENCE_FILES}) + SET (lsdest "${PROJECT_BINARY_DIR}/testfiles/${ls_file}") + #MESSAGE (STATUS " Translating ${ls_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5copy + POST_BUILD + COMMAND ${XLATE_UTILITY} + ARGS ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/${ls_file} ${lsdest} -l3 + ) + ENDFOREACH (ls_file ${HDF5_REFERENCE_FILES}) + + FOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + SET (dest "${PROJECT_BINARY_DIR}/testfiles/${h5_file}") + #MESSAGE (STATUS " Copying ${h5_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5copy + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/${h5_file} ${dest} + ) + ENDFOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + + # Test files + SET (HDF_FILE1 h5copytst) + SET (HDF_FILE2 h5copy_ref) + SET (HDF_EXT_SRC_FILE h5copy_extlinks_src) + SET (HDF_EXT_TRG_FILE h5copy_extlinks_trg) + + MACRO (ADD_H5_TEST testname resultcode testfile vparam srcname dstname) + + IF (NOT "${ARGN}" STREQUAL "") + ADD_TEST ( + NAME H5COPY-${testname} + COMMAND $<TARGET_FILE:h5copy> -f ${ARGN} -i ./testfiles/${testfile}.h5 -o ./testfiles/${testfile}.out.h5 -${vparam} -s ${srcname} -d ${dstname} + ) + ELSE (NOT "${ARGN}" STREQUAL "") + ADD_TEST ( + NAME H5COPY-${testname} + COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${testfile}.h5 -o ./testfiles/${testfile}.out.h5 -${vparam} -s ${srcname} -d ${dstname} + ) + ENDIF (NOT "${ARGN}" STREQUAL "") + IF (NOT ${resultcode} STREQUAL "2") + ADD_TEST ( + NAME H5COPY-DIFF_${testname} + COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${testfile}.h5 ./testfiles/${testfile}.out.h5 ${srcname} ${dstname} + ) + IF (${resultcode} STREQUAL "1") + SET_TESTS_PROPERTIES (H5COPY-DIFF_${testname} PROPERTIES WILL_FAIL "true") + ENDIF (${resultcode} STREQUAL "1") + ENDIF (NOT ${resultcode} STREQUAL "2") + ENDMACRO (ADD_H5_TEST testname resultcode testfile vparam srcname dstname) + + + MACRO (ADD_H5LS_TEST file) + ADD_TEST ( + NAME H5COPY-H5LS_${file} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>" + -D "TEST_ARGS=-Svr;./testfiles/${file}.out.h5" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_OUTPUT=./testfiles/${file}.out.out" + -D "TEST_EXPECT=0" + -D "TEST_REFERENCE=./testfiles/${file}.out.ls" + -D "TEST_MASK=true" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + ENDMACRO (ADD_H5LS_TEST file) + +############# COPY OBJECTS ############## + + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5COPY-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ./testfiles/${HDF_FILE1}.out.h5 + ./testfiles/${HDF_FILE1}.out.out + ) + + # "Test copying various forms of datasets" + ADD_H5_TEST (simple 0 ${HDF_FILE1} v simple simple) + ADD_H5_TEST (chunk 0 ${HDF_FILE1} v chunk chunk) + ADD_H5_TEST (compact 0 ${HDF_FILE1} v compact compact) + ADD_H5_TEST (compound 0 ${HDF_FILE1} v compound compound) + ADD_H5_TEST (compressed 0 ${HDF_FILE1} v compressed compressed) + ADD_H5_TEST (named_vl 0 ${HDF_FILE1} v named_vl named_vl) + ADD_H5_TEST (nested_vl 0 ${HDF_FILE1} v nested_vl nested_vl) + + # "Test copying dataset within group in source file to root of destination" + ADD_H5_TEST (simple_top 0 ${HDF_FILE1} v grp_dsets/simple simple_top) + + # "Test copying & renaming dataset" + ADD_H5_TEST (rename 0 ${HDF_FILE1} v compound rename) + + # "Test copying empty, 'full' & 'nested' groups" + ADD_H5_TEST (grp_empty 0 ${HDF_FILE1} v grp_empty grp_empty) + ADD_H5_TEST (grp_dsets 0 ${HDF_FILE1} v grp_dsets grp_dsets) + ADD_H5_TEST (grp_nested 0 ${HDF_FILE1} v grp_nested grp_nested) + + # "Test copying dataset within group in source file to group in destination" + ADD_H5_TEST (simple_group 0 ${HDF_FILE1} v /grp_dsets/simple /grp_dsets/simple_group) + + # "Test copying & renaming group" + ADD_H5_TEST (grp_rename 1 ${HDF_FILE1} v grp_dsets grp_rename) + + # "Test copying 'full' group hierarchy into group in destination file" + ADD_H5_TEST (grp_dsets_rename 1 ${HDF_FILE1} v grp_dsets /grp_rename/grp_dsets) + + # "Test copying objects into group hier. that doesn't exist yet in destination file" + ADD_H5_TEST (A_B1_simple 0 ${HDF_FILE1} vp simple /A/B1/simple) + ADD_H5_TEST (A_B2_simple2 0 ${HDF_FILE1} vp simple /A/B2/simple2) + ADD_H5_TEST (C_D_simple 0 ${HDF_FILE1} vp /grp_dsets/simple /C/D/simple) + ADD_H5_TEST (E_F_grp_dsets 1 ${HDF_FILE1} vp /grp_dsets /E/F/grp_dsets) + ADD_H5_TEST (G_H_grp_nested 1 ${HDF_FILE1} vp /grp_nested /G/H/grp_nested) + + # Verify that the file created above is correct + ADD_H5LS_TEST (${HDF_FILE1}) + +############# COPY REFERENCES ############## + + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5COPY-clear-refs + COMMAND ${CMAKE_COMMAND} + -E remove + ./testfiles/${HDF_FILE2}.out.h5 + ./testfiles/${HDF_FILE2}.out.out + ) + + # "Test copying object and region references" + ADD_H5_TEST (region_ref 2 ${HDF_FILE2} v / /COPY ref) + + # Verify that the file created above is correct + ADD_H5LS_TEST (${HDF_FILE2}) + +############# COPY EXT LINKS ############## + + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5COPY-clear-ext-links + COMMAND ${CMAKE_COMMAND} + -E remove + ./testfiles/${HDF_EXT_SRC_FILE}.out.h5 + ./testfiles/${HDF_EXT_SRC_FILE}.out.out + ) + + # "Test copying external link directly without -f ext" + ADD_H5_TEST (ext_link 2 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_dset /copy1_dset) + + # "Test copying external link directly with -f ext" + ADD_H5_TEST (ext_link_f 2 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_dset /copy2_dset ext) + + # "Test copying dangling external link (no obj) directly without -f ext" + ADD_H5_TEST (ext_dangle_noobj 0 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_notyet1 /copy_dangle1_1) + + # "Test copying dangling external link (no obj) directly with -f ext" + ADD_H5_TEST (ext_dangle_noobj_f 2 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_notyet1 /copy_dangle1_2 ext) + + # "Test copying dangling external link (no file) directly without -f ext" + ADD_H5_TEST (ext_dangle_nofile 0 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_notyet2 /copy_dangle2_1) + + # "Test copying dangling external link (no file) directly with -f ext" + ADD_H5_TEST (ext_dangle_nofile_f 2 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_notyet2 /copy_dangle2_2 ext) + + # "Test copying a group contains external links without -f ext" + ADD_H5_TEST (ext_link_group 2 ${HDF_EXT_SRC_FILE} v /group_ext /copy1_group) + + # "Test copying a group contains external links with -f ext" + ADD_H5_TEST (ext_link_group_f 2 ${HDF_EXT_SRC_FILE} v /group_ext /copy2_group ext) + + # Verify that the file created above is correct + ADD_H5LS_TEST (${HDF_EXT_SRC_FILE}) + +ENDIF (BUILD_TESTING) + +#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
+INSTALL ( + TARGETS + h5copy + RUNTIME DESTINATION + bin/tools +) diff --git a/tools/h5diff/CMakeLists.txt b/tools/h5diff/CMakeLists.txt new file mode 100644 index 0000000..a032e0d --- /dev/null +++ b/tools/h5diff/CMakeLists.txt @@ -0,0 +1,654 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS_H5DIFF) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +# -------------------------------------------------------------------- +# Add the h5diff and test executables +# -------------------------------------------------------------------- +ADD_EXECUTABLE (h5diff + ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diff_common.c + ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diff_main.c +) +H5_NAMING (h5diff) +TARGET_LINK_LIBRARIES (h5diff ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +SET (H5_DEP_EXECUTABLES h5diff) + +IF (BUILD_TESTING) + IF (NOT BUILD_SHARED_LIBS) + ADD_EXECUTABLE (h5diffgentest ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diffgentest.c) + H5_NAMING (h5diffgentest) + TARGET_LINK_LIBRARIES (h5diffgentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + + #ADD_TEST (NAME h5diffgentest COMMAND $<TARGET_FILE:h5diffgentest>) + + SET (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} + # h5diffgentest + ) + ENDIF (NOT BUILD_SHARED_LIBS) + + #-- Copy all the HDF5 files from the test directory into the source directory + SET (HDF5_REFERENCE_FILES + h5diff_10.txt + h5diff_100.txt + #h5diff_101.txt + #h5diff_102.txt + h5diff_11.txt + h5diff_12.txt + h5diff_13.txt + h5diff_14.txt + h5diff_15.txt + h5diff_16_1.txt + h5diff_16_2.txt + h5diff_16_3.txt + h5diff_17.txt + h5diff_171.txt + h5diff_172.txt + h5diff_18_1.txt + h5diff_18.txt + h5diff_20.txt + h5diff_200.txt + h5diff_201.txt + h5diff_202.txt + h5diff_203.txt + h5diff_204.txt + h5diff_205.txt + h5diff_206.txt + h5diff_207.txt + h5diff_21.txt + h5diff_22.txt + h5diff_23.txt + h5diff_24.txt + h5diff_25.txt + h5diff_26.txt + h5diff_27.txt + h5diff_28.txt + h5diff_300.txt + h5diff_400.txt + h5diff_401.txt + h5diff_402.txt + h5diff_403.txt + h5diff_404.txt + h5diff_405.txt + h5diff_406.txt + h5diff_407.txt + h5diff_408.txt + h5diff_409.txt + h5diff_410.txt + h5diff_411.txt + h5diff_412.txt + h5diff_413.txt + h5diff_414.txt + h5diff_415.txt + h5diff_416.txt + h5diff_417.txt + h5diff_418.txt + h5diff_419.txt + h5diff_420.txt + h5diff_421.txt + h5diff_422.txt + h5diff_423.txt + h5diff_424.txt + h5diff_425.txt + h5diff_450.txt + h5diff_451.txt + h5diff_452.txt + h5diff_453.txt + h5diff_454.txt + h5diff_455.txt + h5diff_456.txt + h5diff_457.txt + h5diff_458.txt + h5diff_459.txt + h5diff_50.txt + h5diff_51.txt + h5diff_52.txt + h5diff_53.txt + h5diff_54.txt + h5diff_55.txt + h5diff_56.txt + h5diff_57.txt + h5diff_58.txt + h5diff_600.txt + h5diff_603.txt + h5diff_604.txt + h5diff_605.txt + h5diff_606.txt + h5diff_607.txt + h5diff_608.txt + h5diff_609.txt + h5diff_610.txt + h5diff_612.txt + h5diff_613.txt + h5diff_614.txt + h5diff_615.txt + h5diff_616.txt + h5diff_617.txt + h5diff_618.txt + h5diff_619.txt + h5diff_621.txt + h5diff_622.txt + h5diff_623.txt + h5diff_624.txt + h5diff_625.txt + h5diff_626.txt + h5diff_627.txt + h5diff_628.txt + h5diff_629.txt + h5diff_70.txt + h5diff_80.txt + h5diff_90.txt + ) + SET (HDF5_REFERENCE_TEST_FILES + h5diff_basic1.h5 + h5diff_basic2.h5 + h5diff_types.h5 + h5diff_dtypes.h5 + h5diff_attr1.h5 + h5diff_attr2.h5 + h5diff_dset1.h5 + h5diff_dset2.h5 + h5diff_hyper1.h5 + h5diff_hyper2.h5 + h5diff_empty.h5 + h5diff_links.h5 + h5diff_softlinks.h5 + h5diff_linked_softlink.h5 + h5diff_extlink_src.h5 + h5diff_extlink_trg.h5 + h5diff_ext2softlink_src.h5 + h5diff_ext2softlink_trg.h5 + h5diff_danglelinks1.h5 + h5diff_danglelinks2.h5 + ) + + FOREACH (txt_file ${HDF5_REFERENCE_FILES}) + SET (txtdest "${PROJECT_BINARY_DIR}/${txt_file}") + #MESSAGE (STATUS " Translating ${txt_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5diff + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/${txt_file} ${txtdest} + ) + ENDFOREACH (txt_file ${HDF5_REFERENCE_FILES}) + + FOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + SET (dest "${PROJECT_BINARY_DIR}/${h5_file}") + #MESSAGE (STATUS " Copying ${h5_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5diff + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/${h5_file} ${dest} + ) + ENDFOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + + IF (WIN32) + ADD_CUSTOM_COMMAND ( + TARGET h5diff + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_101w.txt ${PROJECT_BINARY_DIR}/h5diff_101.txt + ) + + ADD_CUSTOM_COMMAND ( + TARGET h5diff + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_102w.txt ${PROJECT_BINARY_DIR}/h5diff_102.txt + ) + ELSEIF (WIN32) + ADD_CUSTOM_COMMAND ( + TARGET h5diff + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_101.txt ${PROJECT_BINARY_DIR}/h5diff_101.txt + ) + + ADD_CUSTOM_COMMAND ( + TARGET h5diff + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_102.txt ${PROJECT_BINARY_DIR}/h5diff_102.txt + ) + ENDIF (WIN32) + + MACRO (ADD_H5_TEST resultfile resultcode) + ADD_TEST ( + NAME H5DIFF-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5diff>" + -D "TEST_ARGS:STRING=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_OUTPUT=${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${resultfile}.txt" + -D "TEST_APPEND=EXIT CODE:" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + ENDMACRO (ADD_H5_TEST file) + + +############################################################################### +## test file names +############################################################################### + +SET (FILE1 h5diff_basic1.h5) +SET (FILE2 h5diff_basic2.h5) +SET (FILE3 h5diff_types.h5) +SET (FILE4 h5diff_dtypes.h5) +SET (FILE5 h5diff_attr1.h5) +SET (FILE6 h5diff_attr2.h5) +SET (FILE7 h5diff_dset1.h5) +SET (FILE8 h5diff_dset2.h5) +SET (FILE9 h5diff_hyper1.h5) +SET (FILE10 h5diff_hyper2.h5) +SET (FILE11 h5diff_empty.h5) +SET (FILE12 h5diff_links.h5) +SET (FILE13 h5diff_softlinks.h5) +SET (FILE14 h5diff_linked_softlink.h5) +SET (FILE15 h5diff_extlink_src.h5) +SET (FILE16 h5diff_extlink_trg.h5) +SET (FILE17 h5diff_ext2softlink_src.h5) +SET (FILE18 h5diff_ext2softlink_trg.h5) +SET (DANGLE_LINK_FILE1 h5diff_danglelinks1.h5) +SET (DANGLE_LINK_FILE2 h5diff_danglelinks2.h5) + +# ############################################################################ +# # Common usage +# ############################################################################ + +# 1.0 +ADD_H5_TEST (h5diff_10 0 -h) + +# 1.1 normal mode +ADD_H5_TEST (h5diff_11 1 ${FILE1} ${FILE2}) + +# 1.2 normal mode with objects +ADD_H5_TEST (h5diff_12 1 ${FILE1} ${FILE2} g1/dset1 g1/dset2) + +# 1.3 report mode +ADD_H5_TEST (h5diff_13 1 -r ${FILE1} ${FILE2}) + +# 1.4 report mode with objects +ADD_H5_TEST (h5diff_14 1 -r ${FILE1} ${FILE2} g1/dset1 g1/dset2) + +# 1.5 with -d +ADD_H5_TEST (h5diff_15 1 --report --delta=5 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 1.6.1 with -p (int) +ADD_H5_TEST (h5diff_16_1 1 -v -p 0.02 ${FILE1} ${FILE1} g1/dset5 g1/dset6) + +# 1.6.2 with -p (unsigned long_long) +ADD_H5_TEST (h5diff_16_2 1 --verbose --relative=0.02 ${FILE1} ${FILE1} g1/dset7 g1/dset8) + +# 1.6.3 with -p (double) +ADD_H5_TEST (h5diff_16_3 1 -v -p 0.02 ${FILE1} ${FILE1} g1/dset9 g1/dset10) + +# 1.7 verbose mode +ADD_H5_TEST (h5diff_17 1 -v ${FILE1} ${FILE2}) + +# 1.7 test 32-bit INFINITY +ADD_H5_TEST (h5diff_171 0 -v ${FILE1} ${FILE1} /g1/fp19) + +# 1.7 test 64-bit INFINITY +ADD_H5_TEST (h5diff_172 0 -v ${FILE1} ${FILE1} /g1/fp20) + +# 1.8 quiet mode +ADD_H5_TEST (h5diff_18 1 -q ${FILE1} ${FILE2}) + +# 1.8 -v and -q +ADD_H5_TEST (h5diff_18_1 2 -v -q ${FILE1} ${FILE2}) + + +# ############################################################################## +# # not comparable types +# ############################################################################## + +# 2.0 +ADD_H5_TEST (h5diff_20 0 -v ${FILE3} ${FILE3} dset g1) + +# 2.1 +ADD_H5_TEST (h5diff_21 0 -v ${FILE3} ${FILE3} dset l1) + +# 2.2 +ADD_H5_TEST (h5diff_22 0 -v ${FILE3} ${FILE3} dset t1) + +# ############################################################################## +# # compare groups, types, links (no differences and differences) +# ############################################################################## + +# 2.3 +ADD_H5_TEST (h5diff_23 0 -v ${FILE3} ${FILE3} g1 g1) + +# 2.4 +ADD_H5_TEST (h5diff_24 0 -v ${FILE3} ${FILE3} t1 t1) + +# 2.5 +ADD_H5_TEST (h5diff_25 0 -v ${FILE3} ${FILE3} l1 l1) + +# 2.6 +ADD_H5_TEST (h5diff_26 1 -v ${FILE3} ${FILE3} g1 g2) + +# 2.7 +ADD_H5_TEST (h5diff_27 1 -v ${FILE3} ${FILE3} t1 t2) + +# 2.8 +ADD_H5_TEST (h5diff_28 1 -v ${FILE3} ${FILE3} l1 l2) + + + +# ############################################################################## +# # Dataset datatypes +# ############################################################################## + +# 5.0 +ADD_H5_TEST (h5diff_50 1 -v ${FILE4} ${FILE4} dset0a dset0b) + +# 5.1 +ADD_H5_TEST (h5diff_51 1 -v ${FILE4} ${FILE4} dset1a dset1b) + +# 5.2 +ADD_H5_TEST (h5diff_52 1 -v ${FILE4} ${FILE4} dset2a dset2b) + +# 5.3 +ADD_H5_TEST (h5diff_53 1 -v ${FILE4} ${FILE4} dset3a dset4b) + +# 5.4 +ADD_H5_TEST (h5diff_54 1 -v ${FILE4} ${FILE4} dset4a dset4b) + +# 5.5 +ADD_H5_TEST (h5diff_55 1 -v ${FILE4} ${FILE4} dset5a dset5b) + +# 5.6 +ADD_H5_TEST (h5diff_56 1 -v ${FILE4} ${FILE4} dset6a dset6b) + +# 5.7 +ADD_H5_TEST (h5diff_57 0 -v ${FILE4} ${FILE4} dset7a dset7b) + +# 5.8 (region reference) +ADD_H5_TEST (h5diff_58 1 -v ${FILE7} ${FILE8} refreg) + +# ############################################################################## +# # Error messages +# ############################################################################## + + +# 6.0: Check if the command line number of arguments is less than 3 +ADD_H5_TEST (h5diff_600 1 ${FILE1}) + + +# ############################################################################## +# # -d +# ############################################################################## + + +# 6.3: negative value +ADD_H5_TEST (h5diff_603 1 -d -4 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.4: zero +ADD_H5_TEST (h5diff_604 1 -d 0 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.5: non number +ADD_H5_TEST (h5diff_605 1 -d u ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.6: hexadecimal +ADD_H5_TEST (h5diff_606 1 -d 0x1 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.7: string +ADD_H5_TEST (h5diff_607 1 -d "1" ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.8: use system epsilon +ADD_H5_TEST (h5diff_608 1 --use-system-epsilon ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.9: number larger than biggest difference +ADD_H5_TEST (h5diff_609 0 -d 200 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.10: number smaller than smallest difference +ADD_H5_TEST (h5diff_610 1 -d 1 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# ############################################################################## +# # -p +# ############################################################################## + +# 6.12: negative value +ADD_H5_TEST (h5diff_612 1 -p -4 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.13: zero +ADD_H5_TEST (h5diff_613 1 -p 0 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.14: non number +ADD_H5_TEST (h5diff_614 1 -p u ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.15: hexadecimal +ADD_H5_TEST (h5diff_615 1 -p 0x1 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.16: string +ADD_H5_TEST (h5diff_616 1 -p "0.21" ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.17: repeated option +ADD_H5_TEST (h5diff_617 1 -p 0.21 -p 0.22 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.18: number larger than biggest difference +ADD_H5_TEST (h5diff_618 0 -p 2 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.19: number smaller than smallest difference +ADD_H5_TEST (h5diff_619 1 -p 0.005 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + + +# ############################################################################## +# # -n +# ############################################################################## + +# 6.21: negative value +ADD_H5_TEST (h5diff_621 1 -n -4 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.22: zero +ADD_H5_TEST (h5diff_622 1 -n 0 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.23: non number +ADD_H5_TEST (h5diff_623 1 -n u ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.24: hexadecimal +ADD_H5_TEST (h5diff_624 1 -n 0x1 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.25: string +ADD_H5_TEST (h5diff_625 1 -n "2" ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.26: repeated option +ADD_H5_TEST (h5diff_626 1 -n 2 -n 3 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.27: number larger than biggest difference +ADD_H5_TEST (h5diff_627 1 --count=200 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# 6.28: number smaller than smallest difference +ADD_H5_TEST (h5diff_628 1 -n 1 ${FILE1} ${FILE2} g1/dset3 g1/dset4) + +# Disabling this test as it hangs - LRK 20090618 +# 6.29 non valid files +#ADD_H5_TEST (h5diff_629 2 file1.h6 file2.h6) + +# ############################################################################## +# 7. attributes +# ############################################################################## +ADD_H5_TEST (h5diff_70 1 -v ${FILE5} ${FILE6}) + +# ############################################################################## +# 8. all dataset datatypes +# ############################################################################## +ADD_H5_TEST (h5diff_80 1 -v ${FILE7} ${FILE8}) + +# 9. compare a file with itself +ADD_H5_TEST (h5diff_90 0 -v ${FILE2} ${FILE2}) + +# 10. read by hyperslab, print indexes +#if test -n "$pmode" -a "$mydomainname" = hdfgroup.uiuc.edu; then +# # skip this test which sometimes hangs in some THG machines +# MESSAGE (STATUS "SKIP -v ${FILE9} ${FILE10}) +#else +# ADD_H5_TEST (h5diff_100 1 -v ${FILE9} ${FILE10}) +#fi + +# 11. floating point comparison +ADD_H5_TEST (h5diff_101 1 -v ${FILE1} ${FILE1} g1/d1 g1/d2) + +ADD_H5_TEST (h5diff_102 1 -v ${FILE1} ${FILE1} g1/fp1 g1/fp2) + + +# not comparable -c flag +ADD_H5_TEST (h5diff_200 0 ${FILE2} ${FILE2} g2/dset1 g2/dset2) + +ADD_H5_TEST (h5diff_201 0 -c ${FILE2} ${FILE2} g2/dset1 g2/dset2) + +ADD_H5_TEST (h5diff_202 0 -c ${FILE2} ${FILE2} g2/dset2 g2/dset3) + +ADD_H5_TEST (h5diff_203 0 -c ${FILE2} ${FILE2} g2/dset3 g2/dset4) + +ADD_H5_TEST (h5diff_204 0 -c ${FILE2} ${FILE2} g2/dset4 g2/dset5) + +ADD_H5_TEST (h5diff_205 0 -c ${FILE2} ${FILE2} g2/dset5 g2/dset6) + + +# not comparable in compound +ADD_H5_TEST (h5diff_206 0 -c ${FILE2} ${FILE2} g2/dset7 g2/dset8) + +ADD_H5_TEST (h5diff_207 0 -c ${FILE2} ${FILE2} g2/dset8 g2/dset9) + +# ############################################################################## +# # Links compare without --follow-links nor --no-dangling-links +# ############################################################################## +# test for bug1749 +ADD_H5_TEST (h5diff_300 1 -v ${FILE12} ${FILE12} /link_g1 /link_g2) + +# ############################################################################## +# # Links compare with --follow-links Only +# ############################################################################## +# soft links file to file +ADD_H5_TEST (h5diff_400 0 --follow-links -v ${FILE13} ${FILE13}) + +# softlink vs dset" +ADD_H5_TEST (h5diff_401 1 --follow-links -v ${FILE13} ${FILE13} /softlink_dset1_1 /target_dset2) + +# dset vs softlink" +ADD_H5_TEST (h5diff_402 1 --follow-links -v ${FILE13} ${FILE13} /target_dset2 /softlink_dset1_1) + +# softlink vs softlink" +ADD_H5_TEST (h5diff_403 1 --follow-links -v ${FILE13} ${FILE13} /softlink_dset1_1 /softlink_dset2) + +# extlink vs extlink (FILE)" +ADD_H5_TEST (h5diff_404 0 --follow-links -v ${FILE15} ${FILE15}) + +# extlink vs dset" +ADD_H5_TEST (h5diff_405 1 --follow-links -v ${FILE15} ${FILE16} /ext_link_dset1 /target_group2/x_dset) + +# dset vs extlink" +ADD_H5_TEST (h5diff_406 1 --follow-links -v ${FILE16} ${FILE15} /target_group2/x_dset /ext_link_dset1) + +# extlink vs extlink" +ADD_H5_TEST (h5diff_407 1 --follow-links -v ${FILE15} ${FILE15} /ext_link_dset1 /ext_link_dset2) + +# softlink vs extlink" +ADD_H5_TEST (h5diff_408 1 --follow-links -v ${FILE13} ${FILE15} /softlink_dset1_1 /ext_link_dset2) + +# extlink vs softlink " +ADD_H5_TEST (h5diff_409 1 --follow-links -v ${FILE15} ${FILE13} /ext_link_dset2 /softlink_dset1_1) + +# linked_softlink vs linked_softlink (FILE)" +ADD_H5_TEST (h5diff_410 0 --follow-links -v ${FILE14} ${FILE14}) + +# dset2 vs linked_softlink_dset1" +ADD_H5_TEST (h5diff_411 1 --follow-links -v ${FILE14} ${FILE14} /target_dset2 /softlink1_to_slink2) + +# linked_softlink_dset1 vs dset2" +ADD_H5_TEST (h5diff_412 1 --follow-links -v ${FILE14} ${FILE14} /softlink1_to_slink2 /target_dset2) + +# linked_softlink_to_dset1 vs linked_softlink_to_dset2" +ADD_H5_TEST (h5diff_413 1 --follow-links -v ${FILE14} ${FILE14} /softlink1_to_slink2 /softlink2_to_slink2) + +# group vs linked_softlink_group1" +ADD_H5_TEST (h5diff_414 1 --follow-links -v ${FILE14} ${FILE14} /target_group /softlink3_to_slink2) + +# linked_softlink_group1 vs group" +ADD_H5_TEST (h5diff_415 1 --follow-links -v ${FILE14} ${FILE14} /softlink3_to_slink2 /target_group) + +# linked_softlink_to_group1 vs linked_softlink_to_group2" +ADD_H5_TEST (h5diff_416 1 --follow-links -v ${FILE14} ${FILE14} /softlink3_to_slink2 /softlink4_to_slink2) + +# non-exist-softlink vs softlink" +ADD_H5_TEST (h5diff_417 1 --follow-links -v ${FILE13} ${FILE13} /softlink_noexist /softlink_dset2) + +# softlink vs non-exist-softlink" +ADD_H5_TEST (h5diff_418 1 --follow-links -v ${FILE13} ${FILE13} /softlink_dset2 /softlink_noexist) + +# non-exist-extlink_file vs extlink" +ADD_H5_TEST (h5diff_419 1 --follow-links -v ${FILE15} ${FILE15} /ext_link_noexist2 /ext_link_dset2) + +# exlink vs non-exist-extlink_file" +ADD_H5_TEST (h5diff_420 1 --follow-links -v ${FILE15} ${FILE15} /ext_link_dset2 /ext_link_noexist2) + +# extlink vs non-exist-extlink_obj" +ADD_H5_TEST (h5diff_421 1 --follow-links -v ${FILE15} ${FILE15} /ext_link_dset2 /ext_link_noexist1) + +# non-exist-extlink_obj vs extlink" +ADD_H5_TEST (h5diff_422 1 --follow-links -v ${FILE15} ${FILE15} /ext_link_noexist1 /ext_link_dset2) + +# extlink_to_softlink_to_dset1 vs dset2" +ADD_H5_TEST (h5diff_423 1 --follow-links -v ${FILE17} ${FILE18} /ext_link_to_slink1 /dset2) + +# dset2 vs extlink_to_softlink_to_dset1" +ADD_H5_TEST (h5diff_424 1 --follow-links -v ${FILE18} ${FILE17} /dset2 /ext_link_to_slink1) + +# extlink_to_softlink_to_dset1 vs extlink_to_softlink_to_dset2" +ADD_H5_TEST (h5diff_425 1 --follow-links -v ${FILE17} ${FILE17} /ext_link_to_slink1 /ext_link_to_slink2) + + +# ############################################################################## +# # Dangling links compare (--follow-links and --no-dangling-links) +# ############################################################################## +# dangling links --follow-links (FILE to FILE) +ADD_H5_TEST (h5diff_450 1 --follow-links -v ${DANGLE_LINK_FILE1} ${DANGLE_LINK_FILE2}) + +# dangling links --follow-links and --no-dangling-links (FILE to FILE) +ADD_H5_TEST (h5diff_451 2 --follow-links -v --no-dangling-links ${DANGLE_LINK_FILE1} ${DANGLE_LINK_FILE2}) + +# try --no-dangling-links without --follow-links options +ADD_H5_TEST (h5diff_452 2 --no-dangling-links ${FILE13} ${FILE13}) + +# dangling link found for soft links (FILE to FILE) +ADD_H5_TEST (h5diff_453 2 --follow-links -v --no-dangling-links ${FILE13} ${FILE13}) + +# dangling link found for soft links (obj to obj) +ADD_H5_TEST (h5diff_454 2 --follow-links -v --no-dangling-links ${FILE13} ${FILE13} /softlink_dset2 /softlink_noexist) + +# dangling link found for soft links (obj to obj) Both dangle links +ADD_H5_TEST (h5diff_455 2 --follow-links -v --no-dangling-links ${FILE13} ${FILE13} /softlink_noexist /softlink_noexist) + +# dangling link found for ext links (FILE to FILE) +ADD_H5_TEST (h5diff_456 2 --follow-links -v --no-dangling-links ${FILE15} ${FILE15}) + +# dangling link found for ext links (obj to obj). target file exist +ADD_H5_TEST (h5diff_457 2 --follow-links -v --no-dangling-links ${FILE15} ${FILE15} /ext_link_dset1 /ext_link_noexist1) + +# dangling link found for ext links (obj to obj). target file NOT exist +ADD_H5_TEST (h5diff_458 2 --follow-links -v --no-dangling-links ${FILE15} ${FILE15} /ext_link_dset1 /ext_link_noexist2) + +# dangling link found for ext links (obj to obj). Both dangle links +ADD_H5_TEST (h5diff_459 2 --follow-links -v --no-dangling-links ${FILE15} ${FILE15} /ext_link_noexist1 /ext_link_noexist2) + +ENDIF (BUILD_TESTING) + +#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
+INSTALL ( + TARGETS + h5diff + RUNTIME DESTINATION + bin/tools +) diff --git a/tools/h5diff/testfiles/h5diff_101w.txt b/tools/h5diff/testfiles/h5diff_101w.txt new file mode 100755 index 0000000..59176a2 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_101w.txt @@ -0,0 +1,10 @@ +dataset: </g1/d1> and </g1/d2>
+size: [3x2] [3x2]
+position d1 d2 difference
+------------------------------------------------------------
+[ 0 1 ] 1e-009 2e-009 1e-009
+[ 1 0 ] 1e-009 9e-010 1e-010
+[ 1 1 ] 0 1e-009 1e-009
+[ 2 0 ] 1e-009 0 1e-009
+4 differences found
+EXIT CODE: 1
diff --git a/tools/h5diff/testfiles/h5diff_102w.txt b/tools/h5diff/testfiles/h5diff_102w.txt new file mode 100755 index 0000000..36a254e --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_102w.txt @@ -0,0 +1,10 @@ +dataset: </g1/fp1> and </g1/fp2>
+size: [3x2] [3x2]
+position fp1 fp2 difference
+------------------------------------------------------------
+[ 0 1 ] 1e-005 2e-005 1e-005
+[ 1 0 ] 1e-005 9e-006 9.99999e-007
+[ 1 1 ] 0 1e-005 1e-005
+[ 2 0 ] 1e-005 0 1e-005
+4 differences found
+EXIT CODE: 1
diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt new file mode 100644 index 0000000..e19acc4 --- /dev/null +++ b/tools/h5dump/CMakeLists.txt @@ -0,0 +1,611 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS_H5DUMP) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +# -------------------------------------------------------------------- +# Add the h5dump and test executables +# -------------------------------------------------------------------- +ADD_EXECUTABLE (h5dump ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dump.c) +H5_NAMING (h5dump) +TARGET_LINK_LIBRARIES (h5dump ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +SET (H5_DEP_EXECUTABLES h5dump) + +IF (BUILD_TESTING) + IF (NOT BUILD_SHARED_LIBS) + ADD_EXECUTABLE (h5dumpgentest ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dumpgentest.c) + H5_NAMING (h5dumpgentest) + TARGET_LINK_LIBRARIES (h5dumpgentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + + #ADD_TEST (NAME h5dumpgentest COMMAND $<TARGET_FILE:h5dumpgentest>) + + SET (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} + # h5dumpgentest + ) + ENDIF (NOT BUILD_SHARED_LIBS) + + #-- Copy all the HDF5 files from the test directory into the source directory + SET (HDF5_REFERENCE_FILES + tall-1.ddl + tall-2.ddl + tall-2A.ddl + tall-2B.ddl + tall-3.ddl + tall-4s.ddl + tall-5s.ddl + tallfilters.ddl + tarray1.ddl + tarray2.ddl + tarray3.ddl + tarray4.ddl + tarray5.ddl + tarray6.ddl + tarray7.ddl + tarray8.ddl + tattr-1.ddl + tattr-2.ddl + tattr-3.ddl + tattrreg.ddl + tattrregR.ddl + tbigdims.ddl + tboot1.ddl + tboot2.ddl + tchar1.ddl + tchunked.ddl + tcomp-1.ddl + tcomp-2.ddl + tcomp-3.ddl + tcomp-4.ddl + tcompact.ddl + tcontents.ddl + tcontiguos.ddl + tdatareg.ddl + tdataregR.ddl + tdeflate.ddl + tdset-1.ddl + tdset-2.ddl + tdset-3s.ddl + tempty.ddl + texternal.ddl + textlinksrc.ddl + textlinkfar.ddl + tfamily.ddl + tfill.ddl + tfletcher32.ddl + tfpformat.ddl + tgroup-1.ddl + tgroup-2.ddl + tgrp_comments.ddl + thlink-1.ddl + thlink-2.ddl + thlink-3.ddl + thlink-4.ddl + thlink-5.ddl + thyperslab.ddl + tindicesno.ddl + tindicessub1.ddl + tindicessub2.ddl + tindicessub3.ddl + tindicessub4.ddl + tindicesyes.ddl + tlarge_objname.ddl + #tldouble.ddl + tlonglinks.ddl + tloop-1.ddl + tmulti.ddl + tnamed_dtype_attr.ddl + tnestcomp-1.ddl + tnbit.ddl + tnofilename-with-packed-bits.ddl + tnofilename.ddl + tnullspace.ddl + tordergr1.ddl + tordergr2.ddl + tordergr3.ddl + tordergr4.ddl + tordergr5.ddl + torderattr1.ddl + torderattr2.ddl + torderattr3.ddl + torderattr4.ddl + tpackedbits.ddl + tpackedbits2.ddl + tperror.ddl + treference.ddl + tsaf.ddl + tscaleoffset.ddl + tshuffle.ddl + tslink-1.ddl + tslink-2.ddl + tsplit_file.ddl + tstr-1.ddl + tstr-2.ddl + tstring.ddl + tstring2.ddl + tstringe.ddl + tszip.ddl + tudlink-1.ddl + tudlink-2.ddl + tuserfilter.ddl + tvldtypes1.ddl + tvldtypes2.ddl + tvldtypes3.ddl + tvldtypes4.ddl + tvldtypes5.ddl + tvlstr.ddl + tvms.ddl + ) + SET (HDF5_REFERENCE_TEST_FILES + tbin1.ddl + tbin1.ddl + tbin2.ddl + tbin3.ddl + tbin4.ddl + out3.h5import + taindices.h5 + tall.h5 + tarray1.h5 + tarray2.h5 + tarray3.h5 + tarray4.h5 + tarray5.h5 + tarray6.h5 + tarray7.h5 + tarray8.h5 + tattr.h5 + tattr2.h5 + tattrreg.h5 + tbigdims.h5 + tbinary.h5 + tchar.h5 + tcompound.h5 + tcompound_complex.h5 + tdatareg.h5 + tdset.h5 + tempty.h5 + textlinkfar.h5 + textlinksrc.h5 + textlinktar.h5 + tfamily00000.h5 + tfamily00001.h5 + tfamily00002.h5 + tfamily00003.h5 + tfamily00004.h5 + tfamily00005.h5 + tfamily00006.h5 + tfamily00007.h5 + tfamily00008.h5 + tfamily00009.h5 + tfamily00010.h5 + tfcontents1.h5 + tfcontents2.h5 + tfilters.h5 + tfpformat.h5 + tfvalues.h5 + tgroup.h5 + tgrp_comments.h5 + thlink.h5 + thyperslab.h5 + tlarge_objname.h5 + #tldouble.h5 + tlonglinks.h5 + tloop.h5 + tmulti-b.h5 + tmulti-g.h5 + tmulti-l.h5 + tmulti-o.h5 + tmulti-r.h5 + tmulti-s.h5 + tnamed_dtype_attr.h5 + tnestedcomp.h5 + tnullspace.h5 + torderattr.h5 + tordergr.h5 + tsaf.h5 + tslink.h5 + tsplit_file-m.h5 + tsplit_file-r.h5 + tstr.h5 + tstr2.h5 + tstr3.h5 + tudlink.h5 + tvldtypes1.h5 + tvldtypes2.h5 + tvldtypes3.h5 + tvldtypes4.h5 + tvldtypes5.h5 + tvlstr.h5 + tvms.h5 + ) + + FOREACH (ddl_file ${HDF5_REFERENCE_FILES}) + SET (ddldest "${PROJECT_BINARY_DIR}/${ddl_file}") + #MESSAGE (STATUS " Translating ${ddl_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5dump + POST_BUILD + COMMAND ${XLATE_UTILITY} + ARGS ${HDF5_TOOLS_SOURCE_DIR}/testfiles/${ddl_file} ${ddldest} -l3 + ) + ENDFOREACH (ddl_file ${HDF5_REFERENCE_FILES}) + + FOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + SET (dest "${PROJECT_BINARY_DIR}/${h5_file}") + #MESSAGE (STATUS " Copying ${h5_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5dump + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_SOURCE_DIR}/testfiles/${h5_file} ${dest} + ) + ENDFOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + + ADD_CUSTOM_COMMAND ( + TARGET h5dump + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_SOURCE_DIR}/testfiles/tbin1.ddl ${PROJECT_BINARY_DIR}/tbin1LE.ddl + ) + + MACRO (ADD_SKIP_H5_TEST skipresultfile skipresultcode testtype) + IF (${testtype} STREQUAL "SKIP") + MESSAGE (STATUS "SKIP ${skipresultfile} ${ARGN}") + ELSE (${testtype} STREQUAL "SKIP") + ADD_H5_TEST (${skipresultfile} ${skipresultcode} ${ARGN}) + ENDIF (${testtype} STREQUAL "SKIP") + ENDMACRO (ADD_SKIP_H5_TEST) + + MACRO (ADD_H5_TEST resultfile resultcode) + ADD_TEST ( + NAME H5DUMP-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_OUTPUT=${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${resultfile}.ddl" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + ENDMACRO (ADD_H5_TEST file) + + # Determine which filters are available + SET (USE_FILTER_SZIP H5_HAVE_FILTER_SZIP) + SET (USE_FILTER_DEFLATE H5_HAVE_FILTER_DEFLATE) + SET (USE_FILTER_SHUFFLE H5_HAVE_FILTER_SHUFFLE) + SET (USE_FILTER_FLETCHER32 H5_HAVE_FILTER_FLETCHER32) + SET (USE_FILTER_NBIT H5_HAVE_FILTER_NBIT) + SET (USE_FILTER_SCALEOFFSET H5_HAVE_FILTER_SCALEOFFSET) + +# Determine if H5dump packed bits feature is included + SET (USE_PACKED_BITS HDF5_USE_H5DUMP_PACKED_BITS) + +############################################################################## +############################################################################## +### T H E T E S T S ### +############################################################################## +############################################################################## + # test for displaying groups + ADD_H5_TEST (tgroup-1 0 tgroup.h5) + # test for displaying the selected groups + ADD_H5_TEST (tgroup-2 1 --group=/g2 --group / -g /y tgroup.h5) + + # test for displaying simple space datasets + ADD_H5_TEST (tdset-1 0 tdset.h5) + # test for displaying selected datasets + ADD_H5_TEST (tdset-2 1 -H -d dset1 -d /dset2 --dataset=dset3 tdset.h5) + + # test for displaying attributes + ADD_H5_TEST (tattr-1 0 tattr.h5) + # test for displaying the selected attributes of string type and scalar space + ADD_H5_TEST (tattr-2 0 -a /attr1 --attribute /attr4 --attribute=/attr5 tattr.h5) + # test for header and error messages + ADD_H5_TEST (tattr-3 1 --header -a /attr2 --attribute=/attr tattr.h5) + # test for displaying attributes in shared datatype (also in group and dataset) + ADD_H5_TEST (tnamed_dtype_attr 0 tnamed_dtype_attr.h5) + + # test for displaying soft links and user-defined links + ADD_H5_TEST (tslink-1 0 tslink.h5) + ADD_H5_TEST (tudlink-1 0 tudlink.h5) + # test for displaying the selected link + ADD_H5_TEST (tslink-2 0 -l slink2 tslink.h5) + ADD_H5_TEST (tudlink-2 0 -l udlink2 tudlink.h5) + + # tests for hard links + ADD_H5_TEST (thlink-1 0 thlink.h5) + ADD_H5_TEST (thlink-2 0 -d /g1/dset2 --dataset /dset1 --dataset=/g1/g1.1/dset3 thlink.h5) + ADD_H5_TEST (thlink-3 0 -d /g1/g1.1/dset3 --dataset /g1/dset2 --dataset=/dset1 thlink.h5) + ADD_H5_TEST (thlink-4 0 -g /g1 thlink.h5) + ADD_H5_TEST (thlink-5 0 -d /dset1 -g /g2 -d /g1/dset2 thlink.h5) + + # tests for compound data types + ADD_H5_TEST (tcomp-1 0 tcompound.h5) + # test for named data types + ADD_H5_TEST (tcomp-2 0 -t /type1 --datatype /type2 --datatype=/group1/type3 tcompound.h5) + # test for unamed type + #ADD_H5_TEST (tcomp-3 0 -t /#6632 -g /group2 tcompound.h5) + # test complicated compound datatype + ADD_H5_TEST (tcomp-4 0 tcompound_complex.h5) + + #test for the nested compound type + ADD_H5_TEST (tnestcomp-1 0 tnestedcomp.h5) + + # test for options + ADD_H5_TEST (tall-1 0 tall.h5) + ADD_H5_TEST (tall-2 0 --header -g /g1/g1.1 -a attr2 tall.h5) + ADD_H5_TEST (tall-3 0 -d /g2/dset2.1 -l /g1/g1.2/g1.2.1/slink tall.h5) + + # test for loop detection + ADD_H5_TEST (tloop-1 0 tloop.h5) + + # test for string + ADD_H5_TEST (tstr-1 0 tstr.h5) + ADD_H5_TEST (tstr-2 0 tstr2.h5) + + # test for file created by Lib SAF team + ADD_H5_TEST (tsaf 0 tsaf.h5) + + # test for file with variable length data + ADD_H5_TEST (tvldtypes1 0 tvldtypes1.h5) + ADD_H5_TEST (tvldtypes2 0 tvldtypes2.h5) + ADD_H5_TEST (tvldtypes3 0 tvldtypes3.h5) + ADD_H5_TEST (tvldtypes4 0 tvldtypes4.h5) + ADD_H5_TEST (tvldtypes5 0 tvldtypes5.h5) + + #test for file with variable length string data + ADD_H5_TEST (tvlstr 0 tvlstr.h5) + + # test for files with array data + ADD_H5_TEST (tarray1 0 tarray1.h5) + ADD_H5_TEST (tarray2 0 tarray2.h5) + ADD_H5_TEST (tarray3 0 tarray3.h5) + ADD_H5_TEST (tarray4 0 tarray4.h5) + ADD_H5_TEST (tarray5 0 tarray5.h5) + ADD_H5_TEST (tarray6 0 tarray6.h5) + ADD_H5_TEST (tarray7 0 tarray7.h5) + ADD_H5_TEST (tarray8 0 tarray8.h5) + + # test for files with empty data + ADD_H5_TEST (tempty 0 tempty.h5) + + # test for files with groups that have comments + ADD_H5_TEST (tgrp_comments 0 tgrp_comments.h5) + + # test the --filedriver flag + ADD_H5_TEST (tsplit_file 0 --filedriver=split tsplit_file) + ADD_H5_TEST (tfamily 0 --filedriver=family tfamily%05d.h5) + ADD_H5_TEST (tmulti 0 --filedriver=multi tmulti) + + # test for files with group names which reach > 1024 bytes in size + ADD_H5_TEST (tlarge_objname 0 -w157 tlarge_objname.h5) + + # test '-A' to suppress data but print attr's + ADD_H5_TEST (tall-2A 0 -A tall.h5) + + # test '-r' to print attributes in ASCII instead of decimal + ADD_H5_TEST (tall-2B 0 -A -r tall.h5) + + # test Subsetting + ADD_H5_TEST (tall-4s 0 --dataset=/g1/g1.1/dset1.1.1 --start=1,1 --stride=2,3 --count=3,2 --block=1,1 tall.h5) + ADD_H5_TEST (tall-5s 0 -d "/g1/g1.1/dset1.1.2[0;2;10;]" tall.h5) + ADD_H5_TEST (tdset-3s 0 -d "/dset1[1,1;;;]" tdset.h5) + + # test printing characters in ASCII instead of decimal + ADD_H5_TEST (tchar1 0 -r tchar.h5) + + # test failure handling + # Missing file name + IF (${USE_PACKED_BITS}) + ADD_H5_TEST (tnofilename-with-packed-bits 1) + ELSE (${USE_PACKED_BITS}) + ADD_H5_TEST (tnofilename 1) + ENDIF (${USE_PACKED_BITS}) + + # rev. 2004 + + # tests for super block + ADD_H5_TEST (tboot1 0 -H -B -d dset tfcontents1.h5) + ADD_H5_TEST (tboot2 0 -B tfcontents2.h5) + + # test -p with a non existing dataset + ADD_H5_TEST (tperror 1 -p -d bogus tfcontents1.h5) + + # test for file contents + ADD_H5_TEST (tcontents 0 -n tfcontents1.h5) + + # tests for storage layout + # compact + ADD_H5_TEST (tcompact 0 -H -p -d compact tfilters.h5) + # contiguous + ADD_H5_TEST (tcontiguos 0 -H -p -d contiguous tfilters.h5) + # chunked + ADD_H5_TEST (tchunked 0 -H -p -d chunked tfilters.h5) + # external + ADD_H5_TEST (texternal 0 -H -p -d external tfilters.h5) + + # fill values + ADD_H5_TEST (tfill 0 -p tfvalues.h5) + + # several datatype, with references , print path + ADD_H5_TEST (treference 0 tattr2.h5) + + # escape/not escape non printable characters + ADD_H5_TEST (tstringe 0 -e tstr3.h5) + ADD_H5_TEST (tstring 0 tstr3.h5) + # char data as ASCII with non escape + ADD_H5_TEST (tstring2 0 -r -d str4 tstr3.h5) + + # array indices print/not print + ADD_H5_TEST (tindicesyes 0 taindices.h5) + ADD_H5_TEST (tindicesno 0 -y taindices.h5) + + ########## array indices with subsetting + # 1D case + ADD_H5_TEST (tindicessub1 0 -d 1d -s 1 -S 10 -c 2 -k 3 taindices.h5) + + # 2D case + ADD_H5_TEST (tindicessub2 0 -d 2d -s 1,2 -S 3,3 -c 3,2 -k 2,2 taindices.h5) + + # 3D case + ADD_H5_TEST (tindicessub3 0 -d 3d -s 0,1,2 -S 1,3,3 -c 2,2,2 -k 1,2,2 taindices.h5) + + # 4D case + ADD_H5_TEST (tindicessub4 0 -d 4d -s 0,0,1,2 -c 2,2,3,2 -S 1,1,3,3 -k 1,1,2,2 taindices.h5) + + # tests for filters + # SZIP + SET (TESTTYPE "TEST") + IF (NOT USE_FILTER_SZIP) + SET (TESTTYPE "SKIP") + ENDIF (NOT USE_FILTER_SZIP) + ADD_SKIP_H5_TEST (tszip 0 ${TESTTYPE} -H -p -d szip tfilters.h5) + + # deflate + SET (TESTTYPE "TEST") + IF (NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") + ENDIF (NOT USE_FILTER_DEFLATE) + ADD_SKIP_H5_TEST (tdeflate 0 ${TESTTYPE} -H -p -d deflate tfilters.h5) + + # shuffle + SET (TESTTYPE "TEST") + IF (NOT USE_FILTER_SHUFFLE) + SET (TESTTYPE "SKIP") + ENDIF (NOT USE_FILTER_SHUFFLE) + ADD_SKIP_H5_TEST (tshuffle 0 ${TESTTYPE} -H -p -d shuffle tfilters.h5) + + # fletcher32 + SET (TESTTYPE "TEST") + IF (NOT USE_FILTER_FLETCHER32) + SET (TESTTYPE "SKIP") + ENDIF (NOT USE_FILTER_FLETCHER32) + ADD_SKIP_H5_TEST (tfletcher32 0 ${TESTTYPE} -H -p -d fletcher32 tfilters.h5) + + # nbit + SET (TESTTYPE "TEST") + IF (NOT USE_FILTER_NBIT) + SET (TESTTYPE "SKIP") + ENDIF (NOT USE_FILTER_NBIT) + ADD_SKIP_H5_TEST (tnbit 0 ${TESTTYPE} -H -p -d nbit tfilters.h5) + + # scaleoffset + SET (TESTTYPE "TEST") + IF (NOT USE_FILTER_SCALEOFFSET) + SET (TESTTYPE "SKIP") + ENDIF (NOT USE_FILTER_SCALEOFFSET) + ADD_SKIP_H5_TEST (tscaleoffset 0 ${TESTTYPE} -H -p -d scaleoffset tfilters.h5) + + # all + SET (TESTTYPE "TEST") + IF (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_NBIT OR NOT USE_FILTER_SCALEOFFSET) + SET (TESTTYPE "SKIP") + ENDIF (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_NBIT OR NOT USE_FILTER_SCALEOFFSET) + ADD_SKIP_H5_TEST (tallfilters 0 ${TESTTYPE} -H -p -d all tfilters.h5) + + # user defined + ADD_H5_TEST (tuserfilter 0 -H -p -d myfilter tfilters.h5) + + # test for displaying objects with very long names + ADD_H5_TEST (tlonglinks 0 tlonglinks.h5) + + # dimensions over 4GB, print boundary + ADD_H5_TEST (tbigdims 0 -d dset4gb -s 4294967284 -c 22 tbigdims.h5) + + # hyperslab read + ADD_H5_TEST (thyperslab 0 thyperslab.h5) + + # test for displaying dataset and attribute of null space + ADD_H5_TEST (tnullspace 0 tnullspace.h5) + + # test for long double (some systems do not have long double) + #ADD_H5_TEST (tldouble 0 tldouble.h5) + + # test for vms + ADD_H5_TEST (tvms 0 tvms.h5) + + # test for binary output + ADD_H5_TEST (tbin1LE 0 -d integer -o out1LE.bin -b LE tbinary.h5) + + # NATIVE default. the NATIVE test can be validated with h5import/h5diff + ADD_H5_TEST (tbin1 0 -d integer -o out1.bin -b tbinary.h5) + ADD_TEST (NAME H5DUMP-clear-out1 COMMAND ${CMAKE_COMMAND} -E remove out1.h5) + ADD_TEST (NAME H5DUMP-h5import-out1 COMMAND h5import out1.bin -c out3.h5import -o out1.h5) + ADD_TEST (NAME H5DUMP-h5diff-out1 COMMAND h5diff tbinary.h5 out1.h5 /integer /integer) + + ADD_H5_TEST (tbin2 0 -b BE -d float -o out2.bin tbinary.h5) + + # the NATIVE test can be validated with h5import/h5diff + ADD_H5_TEST (tbin3 0 -d integer -o out3.bin -b NATIVE tbinary.h5) + ADD_TEST (NAME H5DUMP-clear-out3 COMMAND ${CMAKE_COMMAND} -E remove out3.h5) + ADD_TEST (NAME H5DUMP-h5import-out3 COMMAND h5import out3.bin -c out3.h5import -o out3.h5) + ADD_TEST (NAME H5DUMP-h5diff-out3 COMMAND h5diff tbinary.h5 out3.h5 /integer /integer -q) + + ADD_H5_TEST (tbin4 0 -d double -b FILE -o out4.bin tbinary.h5) + + # Clean up binary output files + IF (NOT HDF5_NOCLEANUP) + ADD_TEST ( + NAME H5DUMP-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + out1.bin + out1LE.bin + out2.bin + out3.bin + out4.bin + out1.h5 + out3.h5 + ) + ENDIF (NOT HDF5_NOCLEANUP) + + # test for dataset region references + ADD_H5_TEST (tdatareg 0 tdatareg.h5) + ADD_H5_TEST (tdataregR 0 -R tdatareg.h5) + ADD_H5_TEST (tattrreg 0 tattrreg.h5) + ADD_H5_TEST (tattrregR 0 -R tattrreg.h5) + + # tests for group creation order + # "1" tracked, "2" name, root tracked + ADD_H5_TEST (tordergr1 0 --group=1 --sort_by=creation_order --sort_order=ascending tordergr.h5) + ADD_H5_TEST (tordergr2 0 --group=1 --sort_by=creation_order --sort_order=descending tordergr.h5) + ADD_H5_TEST (tordergr3 0 -g 2 -q name -z ascending tordergr.h5) + ADD_H5_TEST (tordergr4 0 -g 2 -q name -z descending tordergr.h5) + ADD_H5_TEST (tordergr5 0 -q creation_order tordergr.h5) + + # tests for attribute order + ADD_H5_TEST (torderattr1 0 -H --sort_by=name --sort_order=ascending torderattr.h5) + ADD_H5_TEST (torderattr2 0 -H --sort_by=name --sort_order=descending torderattr.h5) + ADD_H5_TEST (torderattr3 0 -H --sort_by=creation_order --sort_order=ascending torderattr.h5) + ADD_H5_TEST (torderattr4 0 -H --sort_by=creation_order --sort_order=descending torderattr.h5) + + # tests for floating point user defined printf format + ADD_H5_TEST (tfpformat 0 -m %.7f tfpformat.h5) + + # tests for traversal of external links + ADD_H5_TEST (textlinksrc 0 textlinksrc.h5) + ADD_H5_TEST (textlinkfar 0 textlinkfar.h5) + + # test for dataset packed bits + SET (TESTTYPE "TEST") + IF (NOT ${USE_PACKED_BITS}) + SET (TESTTYPE "SKIP") + ENDIF (NOT ${USE_PACKED_BITS}) + ADD_SKIP_H5_TEST (tpackedbits 0 ${TESTTYPE} -d /dset1 -M 0,2 tdset.h5) + ADD_SKIP_H5_TEST (tpackedbits2 0 ${TESTTYPE} -d /dset1 -M 0,2,2,1 tdset.h5) + +ENDIF (BUILD_TESTING) + +#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
+INSTALL ( + TARGETS + h5dump + RUNTIME DESTINATION + bin/tools +) diff --git a/tools/h5import/CMakeLists.txt b/tools/h5import/CMakeLists.txt new file mode 100644 index 0000000..b99b45d --- /dev/null +++ b/tools/h5import/CMakeLists.txt @@ -0,0 +1,39 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS_H5IMPORT) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +# -------------------------------------------------------------------- +# Add the h5import and test executables +# -------------------------------------------------------------------- +ADD_EXECUTABLE (h5import ${HDF5_TOOLS_H5IMPORT_SOURCE_DIR}/h5import.c) +H5_NAMING (h5import) +TARGET_LINK_LIBRARIES (h5import ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +SET (H5_DEP_EXECUTABLES h5import) + +IF (BUILD_TESTING) + ADD_EXECUTABLE (h5importtest ${HDF5_TOOLS_H5IMPORT_SOURCE_DIR}/h5importtest.c) + H5_NAMING (h5importtest) + TARGET_LINK_LIBRARIES (h5importtest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + + ADD_TEST (NAME h5importtest COMMAND $<TARGET_FILE:h5importtest>) + + SET (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} + h5importtest + ) +ENDIF (BUILD_TESTING) + +#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
+INSTALL ( + TARGETS + h5import + RUNTIME DESTINATION + bin/tools +) diff --git a/tools/h5jam/CMakeLists.txt b/tools/h5jam/CMakeLists.txt new file mode 100644 index 0000000..2fe2c8c --- /dev/null +++ b/tools/h5jam/CMakeLists.txt @@ -0,0 +1,58 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS_H5JAM) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +# -------------------------------------------------------------------- +# Add the h5jam and test executables +# -------------------------------------------------------------------- +ADD_EXECUTABLE (h5jam ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/h5jam.c) +H5_NAMING (h5jam) +TARGET_LINK_LIBRARIES (h5jam ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +ADD_EXECUTABLE (getub ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/getub.c) +H5_NAMING (getub) +TARGET_LINK_LIBRARIES (getub ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +ADD_EXECUTABLE (tellub ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/tellub.c) +H5_NAMING (tellub) +TARGET_LINK_LIBRARIES (tellub ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +ADD_EXECUTABLE (h5unjam ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/h5unjam.c) +H5_NAMING (h5unjam) +TARGET_LINK_LIBRARIES (h5unjam ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +SET (H5_DEP_EXECUTABLES + h5jam + getub + tellub + h5unjam +) + +IF (BUILD_TESTING) + IF (NOT BUILD_SHARED_LIBS) + ADD_EXECUTABLE (h5jamgentest ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/h5jamgentest.c) + H5_NAMING (h5jamgentest) + TARGET_LINK_LIBRARIES (h5jamgentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + + #ADD_TEST (NAME h5jamgentest COMMAND $<TARGET_FILE:h5jamgentest>) + + SET (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} + # h5jamgentest + ) + ENDIF (NOT BUILD_SHARED_LIBS) +ENDIF (BUILD_TESTING) + +#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
+INSTALL ( + TARGETS + h5jam h5unjam + RUNTIME DESTINATION + bin/tools +) diff --git a/tools/h5ls/CMakeLists.txt b/tools/h5ls/CMakeLists.txt new file mode 100644 index 0000000..54669ad --- /dev/null +++ b/tools/h5ls/CMakeLists.txt @@ -0,0 +1,168 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS_H5LS) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +# -------------------------------------------------------------------- +# If testing was NOT enabled, then we need to build the tools library +# -------------------------------------------------------------------- +#-- Add the h5ls executable +ADD_EXECUTABLE (h5ls ${HDF5_TOOLS_H5LS_SOURCE_DIR}/h5ls.c) +H5_NAMING (h5ls) +TARGET_LINK_LIBRARIES (h5ls ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +SET (H5_DEP_EXECUTABLES + h5ls +) + +IF (BUILD_TESTING) + #-- Copy all the HDF5 files from the test directory into the source directory + SET (HDF5_REFERENCE_FILES + help-1.ls + help-2.ls + help-3.ls + nosuchfile.ls + tall-1.ls + tall-2.ls + tarray1.ls + tattr2.ls + tcomp-1.ls + tdataregbe.ls + tdataregle.ls + tdset-1.ls + tempty.ls + textlink-1.ls + textlinksrc-1.ls + textlinksrc-2.ls + textlinksrc-3.ls + textlinksrc-4.ls + textlinksrc-5.ls + textlinksrc-6.ls + textlinksrc-7.ls + tgroup.ls + tgroup-1.ls + tgroup-2.ls + tgroup-3.ls + thlink-1.ls + tloop-1.ls + tnestcomp-1.ls + tsaf.ls + tslink-1.ls + tstr-1.ls + tudlink-1.ls + tvldtypes1.ls + tvldtypes2le.ls + tvldtypes2be.ls + ) + SET (HDF5_REFERENCE_TEST_FILES + tall.h5 + tarray1.h5 + tattr2.h5 + tcompound.h5 + tdatareg.h5 + tdset.h5 + tempty.h5 + textlink.h5 + textlinksrc.h5 + textlinktar.h5 + tgroup.h5 + thlink.h5 + tloop.h5 + tnestedcomp.h5 + tsaf.h5 + tslink.h5 + tstr.h5 + tudlink.h5 + tvldtypes1.h5 + ) + + FOREACH (ls_file ${HDF5_REFERENCE_FILES}) + SET (lsdest "${PROJECT_BINARY_DIR}/${ls_file}") + #MESSAGE (STATUS " Translating ${ls_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5ls + POST_BUILD + COMMAND ${XLATE_UTILITY} + ARGS ${HDF5_TOOLS_SOURCE_DIR}/testfiles/${ls_file} ${lsdest} -l3 + ) + ENDFOREACH (ls_file ${HDF5_REFERENCE_FILES}) + + FOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + SET (dest "${PROJECT_BINARY_DIR}/${h5_file}") + #MESSAGE (STATUS " Copying ${h5_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5ls + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_SOURCE_DIR}/testfiles/${h5_file} ${dest} + ) + ENDFOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + + MACRO (ADD_H5_TEST resultfile resultcode) + ADD_TEST ( + NAME H5LS-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>" + -D "TEST_ARGS=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_OUTPUT=${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${resultfile}.ls" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + ENDMACRO (ADD_H5_TEST file) + + ADD_H5_TEST (help-1 0 -w80 -h) + ADD_H5_TEST (help-2 0 -w80 --help) + ADD_H5_TEST (help-3 0 -w80 -?) + ADD_H5_TEST (tall-1 0 -w80 tall.h5) + ADD_H5_TEST (tall-2 0 -w80 -r -d tall.h5) + ADD_H5_TEST (tgroup 0 -w80 tgroup.h5) + ADD_H5_TEST (tgroup-3 0 -w80 tgroup.h5/g1) + ADD_H5_TEST (tgroup-1 1 -w80 -r -g tgroup.h5) + ADD_H5_TEST (tgroup-2 0 -w80 -g tgroup.h5/g1) + ADD_H5_TEST (tdset-1 0 -w80 -r -d tdset.h5) + ADD_H5_TEST (tslink-1 0 -w80 -r tslink.h5) + ADD_H5_TEST (textlink-1 0 -w80 -r textlink.h5) + ADD_H5_TEST (textlinksrc-1 0 -w80 -Er textlinksrc.h5) + ADD_H5_TEST (textlinksrc-2 0 -w80 -Erv textlinksrc.h5/ext_link5) + ADD_H5_TEST (textlinksrc-3 0 -w80 -Er textlinksrc.h5/ext_link1) + ADD_H5_TEST (textlinksrc-4 0 -w80 -r textlinksrc.h5) + ADD_H5_TEST (textlinksrc-5 0 -w80 -r textlinksrc.h5/ext_link1) + ADD_H5_TEST (textlinksrc-6 0 -w80 -E textlinksrc.h5) + ADD_H5_TEST (textlinksrc-7 0 -w80 -E textlinksrc.h5/ext_link1) + ADD_H5_TEST (tudlink-1 0 -w80 -r tudlink.h5) + ADD_H5_TEST (thlink-1 0 -w80 thlink.h5) + ADD_H5_TEST (tcomp-1 0 -w80 -r -d tcompound.h5) + ADD_H5_TEST (tnestcomp-1 0 -w80 -r -d tnestedcomp.h5) + ADD_H5_TEST (tloop-1 0 -w80 -r -d tloop.h5) + ADD_H5_TEST (tstr-1 0 -w80 -r -d tstr.h5) + ADD_H5_TEST (tsaf 0 -w80 -r -d tsaf.h5) + ADD_H5_TEST (tvldtypes1 0 -w80 -r -d tvldtypes1.h5) + ADD_H5_TEST (tarray1 0 -w80 -r -d tarray1.h5) + ADD_H5_TEST (tempty 0 -w80 -d tempty.h5) + ADD_H5_TEST (tattr2 0 -w80 -v -S tattr2.h5) + ADD_H5_TEST (nosuchfile 1 nosuchfile.h5) + IF (WORDS_BIGENDIAN) + ADD_H5_TEST (tvldtypes2be 0 -v tvldtypes1.h5) + ADD_H5_TEST (tdataregbe 0 -v tdatareg.h5) + ELSE (WORDS_BIGENDIAN) + ADD_H5_TEST (tvldtypes2le 0 -v tvldtypes1.h5) + ADD_H5_TEST (tdataregle 0 -v tdatareg.h5) + ENDIF (WORDS_BIGENDIAN) + +ENDIF (BUILD_TESTING) + +#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
+INSTALL ( + TARGETS + h5ls + RUNTIME DESTINATION + bin/tools +) diff --git a/tools/h5repack/CMakeLists.txt b/tools/h5repack/CMakeLists.txt new file mode 100644 index 0000000..07688ae --- /dev/null +++ b/tools/h5repack/CMakeLists.txt @@ -0,0 +1,531 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS_H5REPACK) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +# -------------------------------------------------------------------- +# Add h5Repack executables and tests +# -------------------------------------------------------------------- +SET (REPACK_COMMON_SRCS + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_copy.c + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_filters.c + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_opttable.c + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_parse.c + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_refs.c + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_verify.c + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack.c +) +INCLUDE_DIRECTORIES (${HDF5_TEST_SOURCE_DIR}) +ADD_EXECUTABLE (h5repack ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_main.c) +H5_NAMING (h5repack) +TARGET_LINK_LIBRARIES (h5repack ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +SET (H5_DEP_EXECUTABLES h5repack) + +IF (BUILD_TESTING) + ADD_EXECUTABLE (testh5repack_detect_szip ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testh5repack_detect_szip.c) + H5_NAMING (testh5repack_detect_szip) + TARGET_LINK_LIBRARIES (testh5repack_detect_szip ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) + + ADD_TEST (NAME testh5repack_detect_szip COMMAND $<TARGET_FILE:testh5repack_detect_szip>) + IF (HDF5_ENABLE_SZIP_SUPPORT) + SET (passRegex "yes") + SET_TESTS_PROPERTIES (testh5repack_detect_szip PROPERTIES PASS_REGULAR_EXPRESSION "yes") + ELSE (HDF5_ENABLE_SZIP_SUPPORT) + SET (passRegex "no") + SET_TESTS_PROPERTIES (testh5repack_detect_szip PROPERTIES PASS_REGULAR_EXPRESSION "no") + ENDIF (HDF5_ENABLE_SZIP_SUPPORT) + + ADD_EXECUTABLE (h5repacktest ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repacktst.c) + H5_NAMING (h5repacktest) + TARGET_LINK_LIBRARIES (h5repacktest ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) + + ADD_TEST (NAME h5repacktest COMMAND $<TARGET_FILE:h5repacktest>) + + SET (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} + h5repacktest + testh5repack_detect_szip + ) + + + SET (INFO_FILE testfiles/h5repack.info) + + SET (FILE0 h5repack_fill.h5) + SET (FILE1 h5repack_objs.h5) + SET (FILE2 h5repack_attr.h5) + SET (FILE3 h5repack_hlink.h5) + SET (FILE4 h5repack_layout.h5) + SET (FILE5 h5repack_early.h5) + SET (FILE7 h5repack_szip.h5) + SET (FILE8 h5repack_deflate.h5) + SET (FILE9 h5repack_shuffle.h5) + SET (FILE10 h5repack_fletcher.h5) + SET (FILE11 h5repack_filters.h5) + SET (FILE12 h5repack_nbit.h5) + SET (FILE13 h5repack_soffset.h5) + SET (FILE14 h5repack_layouto.h5 ) # A file with an older version of the layout message (copy of test/tlayouto.h5) + SET (FILE15 h5repack_named_dtypes.h5) + SET (FILE16 tfamily%05d.h5) # located in common testfiles folder + SET (FILE_REF h5repack_refs.h5) + + #-- Copy all the HDF5 files from the test directory into the source directory + SET (HDF5_REFERENCE_TEST_FILES + h5repack_ext.bin + ublock.bin + h5repack.info + h5repack_attr.h5 + h5repack_deflate.h5 + h5repack_early.h5 + h5repack_ext.h5 + h5repack_fill.h5 + h5repack_filters.h5 + h5repack_fletcher.h5 + h5repack_hlink.h5 + h5repack_layout.h5 + h5repack_layouto.h5 + h5repack_named_dtypes.h5 + h5repack_nbit.h5 + h5repack_objs.h5 + h5repack_refs.h5 + h5repack_shuffle.h5 + h5repack_soffset.h5 + h5repack_szip.h5 + ) + SET (HDF5_COMMON_TEST_FILES + tfamily00000.h5 + tfamily00001.h5 + tfamily00002.h5 + tfamily00003.h5 + tfamily00004.h5 + tfamily00005.h5 + tfamily00006.h5 + tfamily00007.h5 + tfamily00008.h5 + tfamily00009.h5 + tfamily00010.h5 + ) + + FOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + SET (dest "${PROJECT_BINARY_DIR}/testfiles/${h5_file}") + #MESSAGE (STATUS " Copying ${h5_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5repack + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/${h5_file} ${dest} + ) + ENDFOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + + FOREACH (h5c_file ${HDF5_COMMON_TEST_FILES}) + SET (dest "${PROJECT_BINARY_DIR}/testfiles/${h5c_file}") + #MESSAGE (STATUS " Copying ${h5_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5repack + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_SOURCE_DIR}/testfiles/${h5c_file} ${dest} + ) + ENDFOREACH (h5c_file ${HDF5_COMMON_TEST_FILES}) + + + MACRO (ADD_H5_TEST testname testtype testfile) + IF (${testtype} STREQUAL "SKIP") + MESSAGE (STATUS "SKIP ${testfile} ${ARGN}") + ELSE (${testtype} STREQUAL "SKIP") + ADD_TEST ( + NAME H5REPACK-${testname} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out.${testfile} + ) + ADD_TEST ( + NAME H5REPACK-DIFF_${testname} + COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out.${testfile} + ) + ENDIF (${testtype} STREQUAL "SKIP") + ENDMACRO (ADD_H5_TEST testname testfile testtype) + +# +# The tests +# We use the files generated by h5repacktst +# Each run generates "<file>.out.h5" and the tool h5diff is used to +# compare the input and output files +# +# the tests are the same as the program h5repacktst, but run from the CLI +# + +# See which filters are usable (and skip tests for filters we +# don't have). Do this by searching H5pubconf.h to see which +# filters are defined. + +# detect whether the encoder is present. +SET (USE_FILTER_SZIP_ENCODER "no") +IF (HDF5_ENABLE_SZIP_ENCODING) + SET (USE_FILTER_SZIP_ENCODER ${testh5repack_detect_szip}) +ENDIF (HDF5_ENABLE_SZIP_ENCODING) + +IF (H5_HAVE_FILTER_DEFLATE) + SET (USE_FILTER_DEFLATE "true") +ENDIF (H5_HAVE_FILTER_DEFLATE) + +IF (H5_HAVE_FILTER_SZIP) + SET (USE_FILTER_SZIP "true") +ENDIF (H5_HAVE_FILTER_SZIP) + +IF (H5_HAVE_FILTER_SHUFFLE) + SET (USE_FILTER_SHUFFLE "true") +ENDIF (H5_HAVE_FILTER_SHUFFLE) + +IF (H5_HAVE_FILTER_FLETCHER32) + SET (USE_FILTER_FLETCHER32 "true") +ENDIF (H5_HAVE_FILTER_FLETCHER32) + +IF (H5_HAVE_FILTER_NBIT) + SET (USE_FILTER_NBIT "true") +ENDIF (H5_HAVE_FILTER_NBIT) + +IF (H5_HAVE_FILTER_SCALEOFFSET) + SET (USE_FILTER_SCALEOFFSET "true") +ENDIF (H5_HAVE_FILTER_SCALEOFFSET) + +# copy files (these files have no filters) +ADD_H5_TEST (fill "TEST" ${FILE0}) +ADD_H5_TEST (objs "TEST" ${FILE1}) +ADD_H5_TEST (attr "TEST" ${FILE2}) +ADD_H5_TEST (hlink "TEST" ${FILE3}) +ADD_H5_TEST (layout "TEST" ${FILE4}) +ADD_H5_TEST (early "TEST" ${FILE5}) + +# use $FILE4 to write some filters (this file has no filters) + +# gzip with individual object +SET (arg ${FILE4} -f dset1:GZIP=1 -l dset1:CHUNK=20x10) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (gzip_individual ${TESTTYPE} ${arg}) + +# gzip for all +SET (arg ${FILE4} -f GZIP=1) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (gzip_all ${TESTTYPE} ${arg}) + +# szip with individual object +SET (arg ${FILE4} -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) +ADD_H5_TEST (szip_individual ${TESTTYPE} ${arg}) + +# szip for all +SET (arg ${FILE4} -f SZIP=8,NN) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) +ADD_H5_TEST (szip_all ${TESTTYPE} ${arg}) + +# shuffle with individual object +SET (arg ${FILE4} -f dset2:SHUF -l dset2:CHUNK=20x10) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SHUFFLE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SHUFFLE) +ADD_H5_TEST (shuffle_individual ${TESTTYPE} ${arg}) + +# shuffle for all +SET (arg ${FILE4} -f SHUF) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SHUFFLE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SHUFFLE) +ADD_H5_TEST (shuffle_all ${TESTTYPE} ${arg}) + +# fletcher32 with individual object +SET (arg ${FILE4} -f dset2:FLET -l dset2:CHUNK=20x10) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_FLETCHER32) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_FLETCHER32) +ADD_H5_TEST (fletcher_individual ${TESTTYPE} ${arg}) + +# fletcher32 for all +SET (arg ${FILE4} -f FLET) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_FLETCHER32) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_FLETCHER32) +ADD_H5_TEST (fletcher_all ${TESTTYPE} ${arg}) + +# all filters +SET (arg ${FILE4} -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (all_filters ${TESTTYPE} ${arg}) + +########################################################### +# the following tests assume the input files have filters +########################################################### + +# szip copy +SET (arg ${FILE7}) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) +ADD_H5_TEST (szip_copy ${TESTTYPE} ${arg}) + +# szip remove +SET (arg ${FILE7} --filter=dset_szip:NONE) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) +ADD_H5_TEST (szip_remove ${TESTTYPE} ${arg}) + +# deflate copy +SET (arg ${FILE8}) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (deflate_copy ${TESTTYPE} ${arg}) + +# deflate remove +SET (arg ${FILE8} -f dset_deflate:NONE) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (deflate_remove ${TESTTYPE} ${arg}) + +# shuffle copy +SET (arg ${FILE9}) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SHUFFLE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SHUFFLE) +ADD_H5_TEST (shuffle_copy ${TESTTYPE} ${arg}) + +# shuffle remove +SET (arg ${FILE9} -f dset_shuffle:NONE) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SHUFFLE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SHUFFLE) +ADD_H5_TEST (shuffle_remove ${TESTTYPE} ${arg}) + +# fletcher32 copy +SET (arg ${FILE10}) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_FLETCHER32) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_FLETCHER32) +ADD_H5_TEST (fletcher_copy ${TESTTYPE} ${arg}) + +# fletcher32 remove +SET (arg ${FILE10} -f dset_fletcher32:NONE) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_FLETCHER32) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_FLETCHER32) +ADD_H5_TEST (fletcher_remove ${TESTTYPE} ${arg}) + +# nbit copy +SET (arg ${FILE12}) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_NBIT) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_NBIT) +ADD_H5_TEST (nbit_copy ${TESTTYPE} ${arg}) + +# nbit remove +SET (arg ${FILE12} -f dset_nbit:NONE) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_NBIT) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_NBIT) +ADD_H5_TEST (nbit_remove ${TESTTYPE} ${arg}) + +# nbit add +SET (arg ${FILE12} -f dset_int31:NBIT) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_NBIT) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_NBIT) +ADD_H5_TEST (nbit_add ${TESTTYPE} ${arg}) + +# scaleoffset copy +SET (arg ${FILE13}) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SCALEOFFSET) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SCALEOFFSET) +ADD_H5_TEST (scale_copy ${TESTTYPE} ${arg}) + +# scaleoffset add +SET (arg ${FILE13} -f dset_none:SOFF=31,IN) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SCALEOFFSET) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SCALEOFFSET) +ADD_H5_TEST (scale_add ${TESTTYPE} ${arg}) + +# scaleoffset remove +SET (arg ${FILE13} -f dset_scaleoffset:NONE) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SCALEOFFSET) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SCALEOFFSET) +ADD_H5_TEST (scale_remove ${TESTTYPE} ${arg}) + +# remove all filters +SET (arg ${FILE11} -f NONE) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_NBIT OR NOT USE_FILTER_SCALEOFFSET) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_NBIT OR NOT USE_FILTER_SCALEOFFSET) +ADD_H5_TEST (remove_all ${TESTTYPE} ${arg}) + +#filter conversions + +SET (arg ${FILE8} -f dset_deflate:SZIP=8,NN) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (deflate_convert ${TESTTYPE} ${arg}) + +SET (arg ${FILE7} -f dset_szip:GZIP=1) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (szip_convert ${TESTTYPE} ${arg}) + +#limit +SET (arg ${FILE4} -f GZIP=1 -m 1024) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (deflate_limit ${TESTTYPE} ${arg}) + +#file +SET (arg ${FILE4} -e ${INFO_FILE}) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (deflate_file ${TESTTYPE} ${arg}) + +######################################################### +# layout options (these files have no filters) +######################################################### + +ADD_H5_TEST (dset2_chunk_20x10 "TEST" ${FILE4} --layout=dset2:CHUNK=20x10) +ADD_H5_TEST (chunk_20x10 "TEST" ${FILE4} -l CHUNK=20x10) +ADD_H5_TEST (dset2_conti "TEST" ${FILE4} -l dset2:CONTI) +ADD_H5_TEST (conti "TEST" ${FILE4} -l CONTI) +ADD_H5_TEST (dset2_compa "TEST" ${FILE4} -l dset2:COMPA) +ADD_H5_TEST (compa "TEST" ${FILE4} -l COMPA) + + +################################################################ +# layout conversions (file has no filters) +############################################################### + +ADD_H5_TEST (dset_compa_conti "TEST" ${FILE4} -l dset_compact:CONTI) +ADD_H5_TEST (dset_compa_chunk "TEST" ${FILE4} -l dset_compact:CHUNK=2x5) +ADD_H5_TEST (dset_compa_compa "TEST" ${FILE4} -l dset_compact:COMPA) +ADD_H5_TEST (dset_conti_compa "TEST" ${FILE4} -l dset_contiguous:COMPA) +ADD_H5_TEST (dset_conti_chunk "TEST" ${FILE4} -l dset_contiguous:CHUNK=3x6) +ADD_H5_TEST (dset_conti_conti "TEST" ${FILE4} -l dset_contiguous:CONTI) +ADD_H5_TEST (chunk_compa "TEST" ${FILE4} -l dset_chunk:COMPA) +ADD_H5_TEST (chunk_conti "TEST" ${FILE4} -l dset_chunk:CONTI) +ADD_H5_TEST (chunk_18x13 "TEST" ${FILE4} -l dset_chunk:CHUNK=18x13) + +# Native option +# Do not use FILE1, as the named dtype will be converted to native, and h5diff will +# report a difference. +ADD_H5_TEST (native_fill "TEST" ${FILE0} -n) +ADD_H5_TEST (native_attr "TEST" ${FILE2} -n) + + +# latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters) +SET (arg ${FILE4} --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (layout_long_switches ${TESTTYPE} ${arg}) + +# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters) +SET (arg ${FILE4} -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_DEFLATE) +ADD_H5_TEST (layout_short_switches ${TESTTYPE} ${arg}) + +# several global filters +SET (arg ${FILE4} --filter GZIP=1 --filter SHUF) +SET (TESTTYPE "TEST") +IF (NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_SHUFFLE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_SHUFFLE) +ADD_H5_TEST (global_filters ${TESTTYPE} ${arg}) + +# syntax of -i infile -o outfile +# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters) +SET (arg ${FILE4} -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]) +SET (TESTTYPE "LEGACY") +IF (NOT USE_FILTER_DEFLATE) + SET (TESTTYPE "SKIP") +ENDIF (NOT USE_FILTER_DEFLATE) +#ADD_H5_TEST (old_style_layout_short_switches ${TESTTYPE} ${arg}) + +# add a userblock to file +SET (arg ${FILE1} -u ${PROJECT_BINARY_DIR}/testfiles/ublock.bin -b 2048) +ADD_H5_TEST (add_userblock "TEST" ${arg}) + +# add alignment +SET (arg ${FILE1} -t 1 -a 1) +ADD_H5_TEST (add_alignment "TEST" ${arg}) + +# Check repacking file with old version of layout message (should get upgraded +# to new version and be readable, etc.) +ADD_H5_TEST (upgrade_layout "TEST" ${FILE14}) + +# test for datum size > H5TOOLS_MALLOCSIZE +ADD_H5_TEST (gt_mallocsize "TEST" ${FILE1} -f GZIP=1) + +# Check repacking file with committed datatypes in odd configurations +ADD_H5_TEST (committed_dt "TEST" ${FILE15}) + +# tests family driver (file is located in common testfiles folder, uses TOOLTEST1 +#ADD_H5_TEST ( family "FAMILY" ${FILE16}) + +# test various references (bug 1814) +ADD_H5_TEST (bug1814 "TEST" ${FILE_REF}) + +ENDIF (BUILD_TESTING) + +#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
+INSTALL ( + TARGETS + h5repack + RUNTIME DESTINATION + bin/tools +) diff --git a/tools/h5stat/CMakeLists.txt b/tools/h5stat/CMakeLists.txt new file mode 100644 index 0000000..98a9dde --- /dev/null +++ b/tools/h5stat/CMakeLists.txt @@ -0,0 +1,122 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS_H5STAT) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +# -------------------------------------------------------------------- +# Add the h5stat and test executables +# -------------------------------------------------------------------- +ADD_EXECUTABLE (h5stat ${HDF5_TOOLS_H5STAT_SOURCE_DIR}/h5stat.c) +H5_NAMING (h5stat) +TARGET_LINK_LIBRARIES (h5stat ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +SET (H5_DEP_EXECUTABLES h5stat) + +IF (BUILD_TESTING) + IF (NOT BUILD_SHARED_LIBS) + ADD_EXECUTABLE (h5stat_gentest ${HDF5_TOOLS_H5STAT_SOURCE_DIR}/h5stat_gentest.c) + H5_NAMING (h5stat_gentest) + TARGET_LINK_LIBRARIES (h5stat_gentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + + #ADD_TEST (NAME h5stat_gentest COMMAND $<TARGET_FILE:h5stat_gentest>) + + SET (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} + # h5stat_gentest + ) + ENDIF (NOT BUILD_SHARED_LIBS) + + #-- Copy all the HDF5 files from the test directory into the source directory + SET (HDF5_REFERENCE_FILES + h5stat_help1.ddl + h5stat_help2.ddl + h5stat_filters.ddl + h5stat_filters-file.ddl + h5stat_filters-F.ddl + h5stat_filters-d.ddl + h5stat_filters-g.ddl + h5stat_filters-dT.ddl + h5stat_filters-UD.ddl + h5stat_filters-UT.ddl + h5stat_tsohm.ddl + h5stat_newgrat.ddl + h5stat_newgrat-UG.ddl + h5stat_newgrat-UA.ddl + ) + SET (HDF5_REFERENCE_TEST_FILES + h5stat_filters.h5 + h5stat_tsohm.h5 + h5stat_newgrat.h5 + ) + + FOREACH (ddl_file ${HDF5_REFERENCE_FILES}) + SET (ddldest "${PROJECT_BINARY_DIR}/${ddl_file}") + #MESSAGE (STATUS " Translating ${ddl_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5stat + POST_BUILD + COMMAND ${XLATE_UTILITY} + ARGS ${HDF5_TOOLS_H5STAT_SOURCE_DIR}/testfiles/${ddl_file} ${ddldest} -l3 + ) + ENDFOREACH (ddl_file ${HDF5_REFERENCE_FILES}) + + FOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + SET (dest "${PROJECT_BINARY_DIR}/${h5_file}") + #MESSAGE (STATUS " Copying ${h5_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5stat + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_H5STAT_SOURCE_DIR}/testfiles/${h5_file} ${dest} + ) + ENDFOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + + MACRO (ADD_H5_TEST resultfile resultcode) + ADD_TEST ( + NAME H5STAT-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5stat>" + -D "TEST_ARGS=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_OUTPUT=${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${resultfile}.ddl" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + ENDMACRO (ADD_H5_TEST file) + +# Test for help flag + ADD_H5_TEST (h5stat_help1 0 -h) + ADD_H5_TEST (h5stat_help2 0 --help) + +# Test file with groups, compressed datasets, user-applied fileters, etc. +# h5stat_filters.h5 is a copy of ../../testfiles/tfilters.h5 as of release 1.8.0-alpha4 + ADD_H5_TEST (h5stat_filters 0 h5stat_filters.h5) + ADD_H5_TEST (h5stat_filters-file 0 -f h5stat_filters.h5) + ADD_H5_TEST (h5stat_filters-F 0 -F h5stat_filters.h5) + ADD_H5_TEST (h5stat_filters-d 0 -d h5stat_filters.h5) + ADD_H5_TEST (h5stat_filters-g 0 -g h5stat_filters.h5) + ADD_H5_TEST (h5stat_filters-dT 0 -dT h5stat_filters.h5) + ADD_H5_TEST (h5stat_filters-UD 0 -D h5stat_filters.h5) + ADD_H5_TEST (h5stat_filters-UT 0 -T h5stat_filters.h5) +# h5stat_tsohm.h5 is a copy of ../../../test/tsohm.h5 generated by tsohm.c +# as of release 1.8.0-alpha4 + ADD_H5_TEST (h5stat_tsohm 0 h5stat_tsohm.h5) +# h5stat_newgrat.h5 is generated by h5stat_gentest.c + ADD_H5_TEST (h5stat_newgrat 0 h5stat_newgrat.h5) + ADD_H5_TEST (h5stat_newgrat-UG 0 -G h5stat_newgrat.h5) + ADD_H5_TEST (h5stat_newgrat-UA 0 -A h5stat_newgrat.h5) +ENDIF (BUILD_TESTING) + +#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
+INSTALL ( + TARGETS + h5stat + RUNTIME DESTINATION + bin/tools +) diff --git a/tools/lib/CMakeLists.txt b/tools/lib/CMakeLists.txt new file mode 100644 index 0000000..2e6501a --- /dev/null +++ b/tools/lib/CMakeLists.txt @@ -0,0 +1,68 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS_LIB) + +#----------------------------------------------------------------------------- +# Define Sources +#----------------------------------------------------------------------------- +#INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +#INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +SET (H5_TOOLS_LIB_SRCS + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5diff.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5diff_array.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5diff_attr.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5diff_dset.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5diff_util.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5tools.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5tools_filters.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5tools_ref.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5tools_str.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5tools_type.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5tools_utils.c + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5trav.c +) + +SET (H5_TOOLS_LIB_HDRS + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5trav.h + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5tools.h + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5tools_utils.h + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5tools_str.h + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5tools_ref.h + ${HDF5_TOOLS_SOURCE_DIR}/lib/h5diff.h +) + +#-- Always build a static library for linking the ${HDF5_LIB_NAME} tools together +ADD_LIBRARY (${HDF5_TOOLS_LIB_TARGET} ${LIB_TYPE} ${H5_TOOLS_LIB_SRCS} ${H5_TOOLS_LIB_HDRS}) +TARGET_LINK_LIBRARIES (${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) +SET_GLOBAL_VARIABLE( HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_TOOLS_LIB_TARGET}") +H5_SET_LIB_OPTIONS ( + ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TOOLS_LIB_NAME} + ${LIB_TYPE} + HDF5_TOOLS_LIB_NAME_RELEASE + HDF5_TOOLS_LIB_NAME_DEBUG +) + +#----------------------------------------------------------------------------- +# Add file(s) to CMake Install +#----------------------------------------------------------------------------- +INSTALL ( + FILES + ${H5_TOOLS_LIB_HDRS} + DESTINATION + include/tools +) + +#----------------------------------------------------------------------------- +# Add Target(s) to CMake Install for import into other projects +#----------------------------------------------------------------------------- +IF (HDF5_EXPORTED_TARGETS) + INSTALL ( + TARGETS + ${HDF5_TOOLS_LIB_TARGET} + EXPORT + ${HDF5_EXPORTED_TARGETS} + LIBRARY DESTINATION lib/tools + ARCHIVE DESTINATION lib/tools + RUNTIME DESTINATION bin/tools + ) +ENDIF (HDF5_EXPORTED_TARGETS) diff --git a/tools/misc/CMakeLists.txt b/tools/misc/CMakeLists.txt new file mode 100644 index 0000000..0b2eb42 --- /dev/null +++ b/tools/misc/CMakeLists.txt @@ -0,0 +1,100 @@ +cmake_minimum_required (VERSION 2.8) +PROJECT (HDF5_TOOLS_MISC) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_SOURCE_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) + +# -------------------------------------------------------------------- +# Add the misc and test executables +# -------------------------------------------------------------------- +#-- Misc Executables +ADD_EXECUTABLE (h5debug ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5debug.c) +H5_NAMING (h5debug) +TARGET_LINK_LIBRARIES (h5debug ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + +ADD_EXECUTABLE (h5repart ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5repart.c) +H5_NAMING (h5repart) +TARGET_LINK_LIBRARIES (h5repart ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + +ADD_EXECUTABLE (h5mkgrp ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5mkgrp.c) +H5_NAMING (h5mkgrp) +TARGET_LINK_LIBRARIES (h5mkgrp ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + +SET (H5_DEP_EXECUTABLES + h5debug + h5repart + h5mkgrp +) + +IF (BUILD_TESTING) + SET (HDF5_REFERENCE_TEST_FILES + family_file00000.h5 + family_file00001.h5 + family_file00002.h5 + family_file00003.h5 + family_file00004.h5 + family_file00005.h5 + family_file00006.h5 + family_file00007.h5 + family_file00008.h5 + family_file00009.h5 + family_file00010.h5 + family_file00011.h5 + family_file00012.h5 + family_file00013.h5 + family_file00014.h5 + family_file00015.h5 + family_file00016.h5 + family_file00017.h5 + ) + + FOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + SET (dest "${PROJECT_BINARY_DIR}/${h5_file}") + #MESSAGE (STATUS " Copying ${h5_file}") + ADD_CUSTOM_COMMAND ( + TARGET h5repart + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_SOURCE_DIR}/testfiles/${h5_file} ${dest} + ) + ENDFOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) + + IF (NOT BUILD_SHARED_LIBS) + ADD_EXECUTABLE (h5repart_gentest ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5repart_gentest.c) + H5_NAMING (h5repart_gentest) + TARGET_LINK_LIBRARIES (h5repart_gentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + #ADD_TEST (NAME h5repart_gentest COMMAND $<TARGET_FILE:h5repart_gentest>) + ENDIF (NOT BUILD_SHARED_LIBS) + + ADD_EXECUTABLE (h5repart_test ${HDF5_TOOLS_MISC_SOURCE_DIR}/repart_test.c) + H5_NAMING (h5repart_test) + TARGET_LINK_LIBRARIES (h5repart_test ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + + # repartition family member size to 20,000 bytes. + ADD_TEST (NAME h5repart_20K COMMAND $<TARGET_FILE:h5repart> -m 20000 family_file%05d.h5 fst_family%05d.h5) + # repartition family member size to 5 KB. + ADD_TEST (NAME h5repart_5K COMMAND $<TARGET_FILE:h5repart> -m 5k family_file%05d.h5 scd_family%05d.h5) + # convert family file to sec2 file of 20,000 bytes + ADD_TEST (NAME h5repart_sec2 COMMAND $<TARGET_FILE:h5repart> -m 20000 -family_to_sec2 family_file%05d.h5 family_to_sec2.h5) + + # test the output files repartitioned above. + ADD_TEST (NAME h5repart_test COMMAND $<TARGET_FILE:h5repart_test>) + + SET (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} + # h5repart_gentest + h5repart_test + ) +ENDIF (BUILD_TESTING) + +#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
+INSTALL ( + TARGETS + h5debug h5repart + RUNTIME DESTINATION + bin/tools +) |