[svn-r8113] Purpose:

new library function H5Pdelete_filter
deletes one or all filters from a dataset creation property list
this was done for the NONE option of h5repack, added tests for this feature
added a test for the new function in /test/dsets.c


Description:

Solution:

Platforms tested:
linux
solaris
AIX

Misc. update:

5 files changed, 135 insertions, 54 deletions

diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c
index 2dd1f67..c14d1f0 100644
--- a/tools/h5repack/h5repack_copy.c
+++ b/tools/h5repack/h5repack_copy.c
@@ -168,6 +168,7 @@ int do_copy_objects(hid_t fidin,
  for ( i = 0; i < travt->nobjs; i++)
  {
 
+  buf=NULL;
   switch ( travt->objs[i].type )
   {
 /*-------------------------------------------------------------------------
@@ -283,7 +284,7 @@ int do_copy_objects(hid_t fidin,
      if (rank)
      {
       /* filters require CHUNK layout; if we do not have one define a default */
-      if (obj.chunk.rank==0)
+      if (obj.chunk.rank<=0)
       {
        obj.chunk.rank=rank;
        for (j=0; j<rank; j++) 
diff --git a/tools/h5repack/h5repack_filters.c b/tools/h5repack/h5repack_filters.c
index 8fb45f9..6476595 100644
--- a/tools/h5repack/h5repack_filters.c
+++ b/tools/h5repack/h5repack_filters.c
@@ -155,7 +155,8 @@ int print_filters(hid_t dcpl_id)
  * Function: apply_filters
  *
  * Purpose: apply the filters in the object to the property list; 
- *  do extra checking in the case of SZIP
+ *  do extra checking in the case of SZIP; delete all filters in the case
+ *  of H5Z_FILTER_NONE present in the PACK_INFO_T filter array
  *
  * Return: 0, ok, -1 no
  *
@@ -171,55 +172,55 @@ int apply_filters(hid_t dcpl_id,
                   pack_opt_t *options, /* repack options */
                   pack_info_t *obj)    /* info about object to filter */
 {
- int          nfilters;       /* number of filters */
- unsigned     filt_flags;     /* filter flags */
- H5Z_filter_t filtn;          /* filter identification number */
- unsigned     cd_values[20];  /* filter client data values */
- size_t       cd_nelmts;      /* filter client number of values */
- char         f_name[256];    /* filter/file name */
- int          i, j;
+ int          nfilters;       /* number of filters in DCPL */
  unsigned     aggression;     /* the deflate level */
  unsigned     szip_options_mask=H5_SZIP_NN_OPTION_MASK;
  unsigned     szip_pixels_per_block;
- 
+ int          i;
+
  /* get information about input filters */
  if ((nfilters = H5Pget_nfilters(dcpl_id))<0) 
   return -1;
  
- for (i=0; i<nfilters; i++) 
+/*-------------------------------------------------------------------------
+ * check if we have the H5Z_FILTER_NONE filter
+ * if so, just delete all filters from the DCPL and exit
+ *-------------------------------------------------------------------------
+ */
+
+ for ( i=0; i<obj->nfilters; i++)
  {
-  cd_nelmts = NELMTS(cd_values);
-  filtn = H5Pget_filter(dcpl_id, 
-   (unsigned)i, 
-   &filt_flags, 
-   &cd_nelmts,
-   cd_values, 
-   sizeof(f_name), 
-   f_name);
- } 
+  if (obj->filter[i].filtn==H5Z_FILTER_NONE)
+  {
+   if (nfilters && H5Pdelete_filter(dcpl_id,H5Z_FILTER_NONE)<0) 
+    return -1;
+
+   return 1;
+  }
+ }
+
+
+/*-------------------------------------------------------------------------
+ * the type of filter and additional parameter 
+ * type can be one of the filters
+ * H5Z_FILTER_NONE       0,  uncompress if compressed
+ * H5Z_FILTER_DEFLATE	   1 , deflation like gzip	   
+ * H5Z_FILTER_SHUFFLE    2 , shuffle the data
+ * H5Z_FILTER_FLETCHER32 3 , fletcher32 checksum of EDC
+ * H5Z_FILTER_SZIP       4 , szip compression 
+ *-------------------------------------------------------------------------
+ */
 
-/* 
- the type of filter and additional parameter 
- type can be one of the filters
- H5Z_FILTER_NONE       0,  uncompress if compressed
- H5Z_FILTER_DEFLATE	   1 , deflation like gzip	   
- H5Z_FILTER_SHUFFLE    2 , shuffle the data
- H5Z_FILTER_FLETCHER32 3 , fletcher32 checksum of EDC
- H5Z_FILTER_SZIP       4 , szip compression 
-*/
- for ( j=0; j<obj->nfilters; j++)
+ for ( i=0; i<obj->nfilters; i++)
  {
-  switch (obj->filter[j].filtn)
+  switch (obj->filter[i].filtn)
   {
-  case H5Z_FILTER_NONE:
-   
+  default:
    break;
    
-   
   case H5Z_FILTER_DEFLATE:
    
-   
-   aggression=obj->filter[j].cd_values[0];
+   aggression=obj->filter[i].cd_values[0];
    
    /* set up for deflated data */
    if(H5Pset_chunk(dcpl_id, obj->chunk.rank, obj->chunk.chunk_lengths)<0)
@@ -232,7 +233,7 @@ int apply_filters(hid_t dcpl_id,
    
   case H5Z_FILTER_SZIP:
    
-   szip_pixels_per_block=obj->filter[j].cd_values[0];
+   szip_pixels_per_block=obj->filter[i].cd_values[0];
    
    /* check szip parameters */
    if (check_szip(obj->chunk.rank,
@@ -273,13 +274,10 @@ int apply_filters(hid_t dcpl_id,
     return -1;
    
    break;
-   
-   
-  default:
-   break;
+
    
   } /* switch */
- }/*j*/
+ }/*i*/
 
  return 0;
 }
diff --git a/tools/h5repack/h5repack_verify.c b/tools/h5repack/h5repack_verify.c
index 2283bc5..bbf0492 100644
--- a/tools/h5repack/h5repack_verify.c
+++ b/tools/h5repack/h5repack_verify.c
@@ -47,11 +47,15 @@ int has_filter(hid_t dcpl_id,
  
  /* if no information about the input filter is requested return exit */
  if (filtnin==-1)
-  return 1;
+  return 1; 
  
  /* get information about filters */
  if ((nfilters = H5Pget_nfilters(dcpl_id))<0) 
   return -1;
+
+ /* if we do not have filters and the requested filter is NONE, return 1 */
+ if (!nfilters && filtnin==H5Z_FILTER_NONE)
+  return 1;
  
  for (i=0; i<nfilters; i++) 
  {
@@ -190,11 +194,14 @@ int h5repack_verify(const char *fname,
   }
 
 /*-------------------------------------------------------------------------
- * layout check
+ * layout check; check only if a filter exists
  *-------------------------------------------------------------------------
  */
-  if (has_layout(dcpl_id,obj)==0)
-   ret=0;
+  if (obj->filter[j].filtn>H5Z_FILTER_NONE )
+  {
+   if (has_layout(dcpl_id,obj)==0)
+    ret=0;
+  }
 
 /*-------------------------------------------------------------------------
  * close
@@ -248,7 +255,7 @@ int h5repack_verify(const char *fname,
   * filter check
   *-------------------------------------------------------------------------
   */
-    if (options->all_filter==1){
+    if (options->all_filter==1 ){
      if (has_filter(dcpl_id,options->filter_g.filtn)==0)
       ret=0;
     }
diff --git a/tools/h5repack/testh5repack_main.c b/tools/h5repack/testh5repack_main.c
index d81f311..fc7d571 100644
--- a/tools/h5repack/testh5repack_main.c
+++ b/tools/h5repack/testh5repack_main.c
@@ -96,6 +96,82 @@ error:
 }
 
 /*-------------------------------------------------------------------------
+ * Function: test_filter_none
+ *
+ * Purpose: 
+ *
+ * 1) delete filters form the filter pipeline
+ * 2) use the h5diff utility to compare the input and output file; 
+ *     it returns RET==0 if the objects have the same data
+ * 3) use API functions to verify the compression/chunking input on the output file
+ *
+ * Return: Success: zero
+ *  Failure: 1
+ *
+ * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
+ *             September, 19, 2003
+ *
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_filter_none(void)
+{
+ pack_opt_t  pack_options;
+ diff_opt_t  diff_options;
+ memset(&diff_options, 0, sizeof (diff_opt_t));
+ memset(&pack_options, 0, sizeof (pack_opt_t));
+
+ TESTING("    delete filters");
+
+/*-------------------------------------------------------------------------
+ * test the NONE global option
+ *-------------------------------------------------------------------------
+ */
+
+ if (h5repack_init (&pack_options, 0)<0)
+  TEST_ERROR;
+ if (h5repack_addfilter("dset_gzip:NONE",&pack_options)<0)
+  TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options)<0)
+  TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+  TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+  TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+  TEST_ERROR;
+
+/*-------------------------------------------------------------------------
+ * test the NONE specific option; uncompress a dataset
+ *-------------------------------------------------------------------------
+ */
+
+ if (h5repack_init (&pack_options, 0)<0)
+  TEST_ERROR;
+ if (h5repack_addfilter("dset_gzip:NONE",&pack_options)<0)
+  TEST_ERROR;
+ if (h5repack_addfilter("dset1:NONE",&pack_options)<0)
+  TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options)<0)
+  TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+  TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+  TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+  TEST_ERROR;
+ 
+ PASSED();  
+ return 0; 
+ 
+error:                                                       
+ return 1;
+
+
+}
+
+/*-------------------------------------------------------------------------
  * Function: test_filter_deflate
  *
  * Purpose: 
@@ -182,7 +258,8 @@ test_filter_deflate(void)
   TEST_ERROR;
  if (h5repack_end (&pack_options)<0)
   TEST_ERROR;
- 
+
+
  PASSED();  
 #else
  SKIPPED();
@@ -193,11 +270,8 @@ test_filter_deflate(void)
 error:                                                       
  return 1;
 #endif
-
-
 }
 
-
 /*-------------------------------------------------------------------------
  * Function: test_filter_szip
  *
@@ -347,10 +421,8 @@ error:
  return 1;
 #endif
 
-
 }
 
-
 /*-------------------------------------------------------------------------
  * Function: test_filter_checksum 
  *
@@ -743,6 +815,9 @@ int main (void)
  /* test a copy with no filters */
  nerrors += test_copy();
 
+ /* test a copy with the delete filters option */
+ nerrors += test_filter_none();
+
  /* test a copy with the deflate filter */
  nerrors += test_filter_deflate();
 
diff --git a/tools/lib/h5trav.c b/tools/lib/h5trav.c
index a005636..9c1db43 100644
--- a/tools/lib/h5trav.c
+++ b/tools/lib/h5trav.c
@@ -624,7 +624,7 @@ int h5trav_getindext(const char *name, trav_table_t *table)
   result = (int)(pdest - table->objs[i].name);
 
   /* found at position 1, meaning without '/' */
-  if( pdest != NULL && result==1 )
+  if( pdest != NULL && result==1 && strlen(table->objs[i].name)-1==strlen(name))
    return i;
 
   /* search also in the list of links */