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authorQuincey Koziol <koziol@hdfgroup.org>2016-05-12 20:47:03 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2016-05-12 20:47:03 (GMT)
commit18ad868b231754e4da03c79828e8b18a2d63c80a (patch)
treeb1d25c0dd14fc2cfb50108a53e55f103488719c1 /tools
parent92806fb5e6778373638c29d36ef3e4c1c1ac3ab0 (diff)
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[svn-r29924] Description:
Bring h5format_convert tool from revise_chunks branch to trunk. Tested on: MacoSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
Diffstat (limited to 'tools')
-rw-r--r--tools/Makefile.am2
-rw-r--r--tools/h5format_convert/Makefile.am49
-rw-r--r--tools/h5format_convert/Makefile.in1502
-rw-r--r--tools/h5format_convert/h5fc_chk_idx.c103
-rw-r--r--tools/h5format_convert/h5fc_gentest.c661
-rw-r--r--tools/h5format_convert/h5format_convert.c474
-rw-r--r--tools/h5format_convert/testfiles/h5fc_d_file.ddl26
-rw-r--r--tools/h5format_convert/testfiles/h5fc_dname.ddl26
-rw-r--r--tools/h5format_convert/testfiles/h5fc_edge_v3.h5bin0 -> 2526 bytes
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext1_f.ddl58
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext1_f.h5bin0 -> 8296 bytes
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext1_i.ddl58
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext1_i.h5bin0 -> 8062 bytes
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext1_s.ddl58
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext1_s.h5bin0 -> 8128 bytes
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext2_if.ddl58
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext2_if.h5bin0 -> 8062 bytes
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext2_is.ddl58
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext2_is.h5bin0 -> 8178 bytes
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext2_sf.ddl58
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext2_sf.h5bin0 -> 6612 bytes
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext3_isf.ddl58
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext3_isf.h5bin0 -> 8215 bytes
-rw-r--r--tools/h5format_convert/testfiles/h5fc_ext_none.h5bin0 -> 8010 bytes
-rw-r--r--tools/h5format_convert/testfiles/h5fc_help.ddl25
-rw-r--r--tools/h5format_convert/testfiles/h5fc_non_v3.h5bin0 -> 6818 bytes
-rw-r--r--tools/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl1
-rw-r--r--tools/h5format_convert/testfiles/h5fc_nonexistfile.ddl1
-rw-r--r--tools/h5format_convert/testfiles/h5fc_nooption.ddl25
-rw-r--r--tools/h5format_convert/testfiles/h5fc_v_all.ddl77
-rw-r--r--tools/h5format_convert/testfiles/h5fc_v_bt1.ddl12
-rw-r--r--tools/h5format_convert/testfiles/h5fc_v_n_1d.ddl14
-rw-r--r--tools/h5format_convert/testfiles/h5fc_v_n_all.ddl56
-rw-r--r--tools/h5format_convert/testfiles/h5fc_v_ndata_bt1.ddl13
-rw-r--r--tools/h5format_convert/testfiles/h5fc_v_non_chunked.ddl12
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext1_f.ddl58
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext1_f.h5bin0 -> 19987 bytes
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext1_i.ddl58
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext1_i.h5bin0 -> 32716 bytes
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext1_s.ddl58
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext1_s.h5bin0 -> 20032 bytes
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext2_if.ddl58
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext2_if.h5bin0 -> 32720 bytes
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext2_is.ddl58
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext2_is.h5bin0 -> 32872 bytes
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext2_sf.ddl58
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext2_sf.h5bin0 -> 18512 bytes
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext3_isf.ddl58
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext3_isf.h5bin0 -> 32896 bytes
-rw-r--r--tools/h5format_convert/testfiles/old_h5fc_ext_none.h5bin0 -> 19912 bytes
-rw-r--r--tools/h5format_convert/testh5fc.sh.in494
51 files changed, 4384 insertions, 1 deletions
diff --git a/tools/Makefile.am b/tools/Makefile.am
index 38e853d..887c0f0 100644
--- a/tools/Makefile.am
+++ b/tools/Makefile.am
@@ -25,6 +25,6 @@ CONFIG=ordered
# All subdirectories
SUBDIRS=lib h5diff h5ls h5dump misc h5import h5repack h5jam h5copy h5stat \
- perform
+ h5format_convert perform
include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5format_convert/Makefile.am b/tools/h5format_convert/Makefile.am
new file mode 100644
index 0000000..d3aef7d
--- /dev/null
+++ b/tools/h5format_convert/Makefile.am
@@ -0,0 +1,49 @@
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src directory
+AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+#test script and program
+TEST_PROG=h5fc_gentest
+TEST_SCRIPT=testh5fc.sh
+
+check_PROGRAMS=$(TEST_PROG) h5fc_chk_idx
+check_SCRIPTS=$(TEST_SCRIPT)
+SCRIPT_DEPEND=h5format_convert$(EXEEXT)
+
+# These are our main targets, the tools
+bin_PROGRAMS=h5format_convert
+
+# Add h5format_convert specific linker flags here
+h5format_convert_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+
+# Tell automake to clean h5redeploy script
+CHECK_CLEANFILES+=*.h5
+
+# These were generated by configure. Remove them only when distclean.
+DISTCLEANFILES=testh5fc.sh
+
+# All programs rely on hdf5 library and h5tools library
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5format_convert/Makefile.in b/tools/h5format_convert/Makefile.in
new file mode 100644
index 0000000..de362a4
--- /dev/null
+++ b/tools/h5format_convert/Makefile.in
@@ -0,0 +1,1502 @@
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+
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+
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+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
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+# Copyright by the Board of Trustees of the University of Illinois.
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+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
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+ { \
+ if (rc < 0) \
+ fatal("failed to read from " $$0 ".trs"); \
+ if (line ~ /$(am__global_test_result_rx)/) \
+ { \
+ sub("$(am__global_test_result_rx)", "", line); \
+ sub("[ ]*$$", "", line); \
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+ } \
+ else if (line ~ /$(am__copy_in_global_log_rx)[nN][oO]/) \
+ copy_in_global_log = 0; \
+ }; \
+ if (copy_in_global_log) \
+ { \
+ rst_section(global_test_result ": " $$0); \
+ while ((rc = (getline line < ($$0 ".log"))) != 0) \
+ { \
+ if (rc < 0) \
+ fatal("failed to read from " $$0 ".log"); \
+ print line; \
+ }; \
+ printf "\n"; \
+ }; \
+ close ($$0 ".trs"); \
+ close ($$0 ".log"); \
+}'
+# Restructured Text title.
+am__rst_title = { sed 's/.*/ & /;h;s/./=/g;p;x;s/ *$$//;p;g' && echo; }
+# Solaris 10 'make', and several other traditional 'make' implementations,
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+# Default flags passed to test drivers.
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+ --color-tests "$$am__color_tests" \
+ --enable-hard-errors "$$am__enable_hard_errors" \
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+# developer- defined test setup AM_TESTS_ENVIRONMENT (if any), and
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+case "$@" in \
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+ *) am__odir=.;; \
+esac; \
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+ || $(MKDIR_P) "$$am__odir" || exit $$?; \
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+ am__enable_hard_errors=no; \
+else \
+ am__enable_hard_errors=yes; \
+fi; \
+case " $(XFAIL_TESTS) " in \
+ *[\ \ ]$$f[\ \ ]* | *[\ \ ]$$dir$$f[\ \ ]*) \
+ am__expect_failure=yes;; \
+ *) \
+ am__expect_failure=no;; \
+esac; \
+$(AM_TESTS_ENVIRONMENT) $(TESTS_ENVIRONMENT)
+# A shell command to get the names of the tests scripts with any registered
+# extension removed (i.e., equivalently, the names of the test logs, with
+# the '.log' extension removed). The result is saved in the shell variable
+# '$bases'. This honors runtime overriding of TESTS and TEST_LOGS. Sadly,
+# we cannot use something simpler, involving e.g., "$(TEST_LOGS:.log=)",
+# since that might cause problem with VPATH rewrites for suffix-less tests.
+# See also 'test-harness-vpath-rewrite.sh' and 'test-trs-basic.sh'.
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+ bases='$(TEST_LOGS)'; \
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+am__set_b = \
+ case '$@' in \
+ */*) \
+ case '$*' in \
+ */*) b='$*';; \
+ *) b=`echo '$@' | sed 's/\.log$$//'`; \
+ esac;; \
+ *) \
+ b='$*';; \
+ esac
+am__test_logs1 = $(TESTS:=.log)
+am__test_logs2 = $(am__test_logs1:@EXEEXT@.log=.log)
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+am__DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/testh5fc.sh.in \
+ $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/test-driver \
+ $(top_srcdir)/config/commence.am \
+ $(top_srcdir)/config/conclude.am
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = @ACLOCAL@
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+# This applies to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS as well.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+
+# Include src directory
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@ -I$(top_srcdir)/src \
+ -I$(top_srcdir)/tools/lib
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
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+
+# Make sure that these variables are exported to the Makefiles
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+H5CONFIG_F_RKIND_SIZEOF = @H5CONFIG_F_RKIND_SIZEOF@
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+HAVE_DMALLOC = @HAVE_DMALLOC@
+HAVE_Fortran_INTEGER_SIZEOF_16 = @HAVE_Fortran_INTEGER_SIZEOF_16@
+HAVE_PTHREAD = @HAVE_PTHREAD@
+HDF5_HL = @HDF5_HL@
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+HDF_CXX = @HDF_CXX@
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+INSTALL = @INSTALL@
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+INTERNAL_DEBUG_OUTPUT = @INTERNAL_DEBUG_OUTPUT@
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+MAINT = @MAINT@
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+METADATATRACEFILE = @METADATATRACEFILE@
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+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
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+PAC_FC_ALL_REAL_KINDS = @PAC_FC_ALL_REAL_KINDS@
+PAC_FC_ALL_REAL_KINDS_SIZEOF = @PAC_FC_ALL_REAL_KINDS_SIZEOF@
+PAC_FC_MAX_REAL_PRECISION = @PAC_FC_MAX_REAL_PRECISION@
+PAC_FORTRAN_NATIVE_DOUBLE_KIND = @PAC_FORTRAN_NATIVE_DOUBLE_KIND@
+PAC_FORTRAN_NATIVE_DOUBLE_SIZEOF = @PAC_FORTRAN_NATIVE_DOUBLE_SIZEOF@
+PAC_FORTRAN_NATIVE_INTEGER_KIND = @PAC_FORTRAN_NATIVE_INTEGER_KIND@
+PAC_FORTRAN_NATIVE_INTEGER_SIZEOF = @PAC_FORTRAN_NATIVE_INTEGER_SIZEOF@
+PAC_FORTRAN_NATIVE_REAL_KIND = @PAC_FORTRAN_NATIVE_REAL_KIND@
+PAC_FORTRAN_NATIVE_REAL_SIZEOF = @PAC_FORTRAN_NATIVE_REAL_SIZEOF@
+PARALLEL = @PARALLEL@
+PATH_SEPARATOR = @PATH_SEPARATOR@
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+RANLIB = @RANLIB@
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+_ACJNI_JAVAC = @_ACJNI_JAVAC@
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+abs_srcdir = @abs_srcdir@
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+abs_top_srcdir = @abs_top_srcdir@
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+build_vendor = @build_vendor@
+builddir = @builddir@
+datadir = @datadir@
+datarootdir = @datarootdir@
+
+# Install directories that automake doesn't know about
+docdir = $(exec_prefix)/doc
+dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
+exec_prefix = @exec_prefix@
+host = @host@
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+libdir = @libdir@
+libexecdir = @libexecdir@
+localedir = @localedir@
+localstatedir = @localstatedir@
+mandir = @mandir@
+mkdir_p = @mkdir_p@
+oldincludedir = @oldincludedir@
+pdfdir = @pdfdir@
+prefix = @prefix@
+program_transform_name = @program_transform_name@
+psdir = @psdir@
+sbindir = @sbindir@
+sharedstatedir = @sharedstatedir@
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+sysconfdir = @sysconfdir@
+target_alias = @target_alias@
+top_build_prefix = @top_build_prefix@
+top_builddir = @top_builddir@
+top_srcdir = @top_srcdir@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Some machines need a command to run executables; this is that command
+# so that our tests will run.
+# We use RUNEXEC instead of RUNSERIAL directly because it may be that
+# some tests need to be run with a different command. Older versions
+# of the makefiles used the command
+# $(LIBTOOL) --mode=execute
+# in some directories, for instance.
+RUNEXEC = $(RUNSERIAL)
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5JNI = $(top_builddir)/java/src/jni/libhdf5_java.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
+
+# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below
+# has been removed. According to the official description of DESTDIR by Gnu at
+# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is
+# prepended to the normal and complete install path that it precedes for the
+# purpose of installing in a temporary directory which is useful for building
+# rpms and other packages. The '/' after ${DESTDIR} will be followed by another
+# '/' at the beginning of the normal install path. When DESTDIR is empty the
+# path then begins with '//', which is incorrect and causes problems at least for
+# Cygwin.
+
+# Scripts used to build examples
+# If only shared libraries have been installed, have h5cc build examples with
+# shared libraries instead of static libraries
+H5CC = ${DESTDIR}$(bindir)/h5cc
+H5CC_PP = ${DESTDIR}$(bindir)/h5pcc
+H5FC = ${DESTDIR}$(bindir)/h5fc
+H5FC_PP = ${DESTDIR}$(bindir)/h5pfc
+H5CPP = ${DESTDIR}$(bindir)/h5c++
+ACLOCAL_AMFLAGS = "-I m4"
+
+# The trace script; this is used on source files from the C library to
+# insert tracing macros.
+TRACE = perl $(top_srcdir)/bin/trace
+
+# .chkexe files are used to mark tests that have run successfully.
+# .chklog files are output from those tests.
+# *.clog and *.clog2 are from the MPE option.
+
+# Tell automake to clean h5redeploy script
+CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 *.h5
+
+#test script and program
+TEST_PROG = h5fc_gentest
+TEST_SCRIPT = testh5fc.sh
+check_SCRIPTS = $(TEST_SCRIPT)
+SCRIPT_DEPEND = h5format_convert$(EXEEXT)
+
+# Add h5format_convert specific linker flags here
+h5format_convert_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+
+# These were generated by configure. Remove them only when distclean.
+DISTCLEANFILES = testh5fc.sh
+
+# All programs rely on hdf5 library and h5tools library
+LDADD = $(LIBH5TOOLS) $(LIBHDF5)
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
+# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and
+# EXTRA_TEST variables are supplied to allow the user to force targets to
+# be built at certain times.
+LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \
+ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \
+ $(EXTRA_PROG)
+
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST)
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS =
+TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
+TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
+TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
+TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_)
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .log .o .obj .sh .sh$(EXEEXT) .trs
+$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__configure_deps)
+ @for dep in $?; do \
+ case '$(am__configure_deps)' in \
+ *$$dep*) \
+ ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+ && { if test -f $@; then exit 0; else break; fi; }; \
+ exit 1;; \
+ esac; \
+ done; \
+ echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5format_convert/Makefile'; \
+ $(am__cd) $(top_srcdir) && \
+ $(AUTOMAKE) --foreign tools/h5format_convert/Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+ @case '$?' in \
+ *config.status*) \
+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+ *) \
+ echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+ esac;
+$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__empty):
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(am__aclocal_m4_deps):
+testh5fc.sh: $(top_builddir)/config.status $(srcdir)/testh5fc.sh.in
+ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+install-binPROGRAMS: $(bin_PROGRAMS)
+ @$(NORMAL_INSTALL)
+ @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
+ if test -n "$$list"; then \
+ echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
+ $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \
+ fi; \
+ for p in $$list; do echo "$$p $$p"; done | \
+ sed 's/$(EXEEXT)$$//' | \
+ while read p p1; do if test -f $$p \
+ || test -f $$p1 \
+ ; then echo "$$p"; echo "$$p"; else :; fi; \
+ done | \
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+ $(RM) -rf $(CHECK_CLEANFILES)
+
+# run check-clean whenever mostlyclean is run
+mostlyclean-local: build-check-clean
+
+# check-install is just a synonym for installcheck
+check-install: installcheck
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in chk_TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test:
+ @$(MAKE) build-check-s
+ @$(MAKE) build-check-p
+
+# Actual execution of check-s.
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
+ @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \
+ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+ fi
+ @$(MAKE) $(AM_MAKEFLAGS) _exec_check-s
+ @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \
+ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+ fi
+
+_exec_check-s: $(TEST_PROG_CHKEXE) $(TEST_SCRIPT_CHKSH)
+
+# The dummy.chkexe here prevents the target from being
+# empty if there are no tests in the current directory.
+# $${log} is the log file.
+# $${tname} is the name of test.
+$(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_:
+ @if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummy.chkexe_"; then \
+ tname=$(@:.chkexe_=)$(EXEEXT);\
+ log=$(@:.chkexe_=.chklog); \
+ echo "============================"; \
+ if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \
+ echo "No need to test $${tname} again."; \
+ else \
+ echo "============================" > $${log}; \
+ if test "X$(FORTRAN_API)" = "Xyes"; then \
+ echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
+ echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ elif test "X$(CXX_API)" = "Xyes"; then \
+ echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
+ echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\
+ else \
+ echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
+ echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ fi; \
+ echo "============================" >> $${log}; \
+ srcdir="$(srcdir)" \
+ $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \
+ && touch $(@:.chkexe_=.chkexe) || \
+ (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
+ (cat $${log} && false) || exit 1; \
+ echo "" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
+ echo "============================" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)"; \
+ cat $${log}; \
+ fi; \
+ fi
+
+# The dummysh.chkexe here prevents the target from being
+# empty if there are no tests in the current directory.
+# $${log} is the log file.
+# $${tname} is the name of test.
+$(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
+ @if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummysh.chkexe_"; then \
+ cmd=$(@:.chkexe_=);\
+ tname=`basename $$cmd`;\
+ chkname=`basename $(@:.chkexe_=.chkexe)`;\
+ log=`basename $(@:.chkexe_=.chklog)`; \
+ echo "============================"; \
+ if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \
+ echo "No need to test $${tname} again."; \
+ else \
+ echo "============================" > $${log}; \
+ if test "X$(FORTRAN_API)" = "Xyes"; then \
+ echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
+ echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ elif test "X$(CXX_API)" = "Xyes"; then \
+ echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
+ echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ else \
+ echo "Testing $${tname} $(TEST_FLAGS)"; \
+ echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ fi; \
+ echo "============================" >> $${log}; \
+ RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)" \
+ srcdir="$(srcdir)" \
+ $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \
+ && touch $${chkname} || \
+ (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
+ (cat $${log} && false) || exit 1; \
+ echo "" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
+ echo "============================" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)"; \
+ cat $${log}; \
+ fi; \
+ echo "============================"; \
+ fi
+
+# Actual execution of check-p.
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
+ @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \
+ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+ fi
+ @if test -n "$(TEST_PROG_PARA)"; then \
+ echo "**** Hint ****"; \
+ echo "Parallel test files reside in the current directory" \
+ "by default."; \
+ echo "Set HDF5_PARAPREFIX to use another directory. E.g.,"; \
+ echo " HDF5_PARAPREFIX=/PFS/user/me"; \
+ echo " export HDF5_PARAPREFIX"; \
+ echo " make check"; \
+ echo "**** end of Hint ****"; \
+ fi
+ @for test in $(TEST_PROG_PARA) dummy; do \
+ if test $$test != dummy; then \
+ $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
+ RUNEXEC="$(RUNPARALLEL)" || exit 1; \
+ fi; \
+ done
+ @for test in $(TEST_SCRIPT_PARA) dummy; do \
+ if test $$test != dummy; then \
+ $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
+ fi; \
+ done
+ @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \
+ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+ fi
+
+# Run test with different Virtual File Driver
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
+ @for vfd in $(VFD_LIST) dummy; do \
+ if test $$vfd != dummy; then \
+ echo "============================"; \
+ echo "Testing Virtual File Driver $$vfd"; \
+ echo "============================"; \
+ $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1; \
+ HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \
+ fi; \
+ done
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5format_convert/h5fc_chk_idx.c b/tools/h5format_convert/h5fc_chk_idx.c
new file mode 100644
index 0000000..3a87594
--- /dev/null
+++ b/tools/h5format_convert/h5fc_chk_idx.c
@@ -0,0 +1,103 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * A program to verify that the chunk indexing type of a dataset in a file
+ * is version 1 B-tree.
+ * This is to support the testing of the tool "h5format_convert".
+ */
+
+#include "hdf5.h"
+#include "H5private.h"
+#include "h5tools.h"
+
+static void usage(void);
+
+static void
+usage(void)
+{
+ HDfprintf(stdout, "Usage: h5fc_chk_idx file_name dataset_pathname\n");
+} /* usage() */
+
+/*-------------------------------------------------------------------------
+ * Function: main
+ *
+ * Purpose: To check that the chunk indexing type for the dataset in
+ * the file is version 1 B-tree.
+ *
+ * Return: 0 -- the indexing type is version 1 B-tree
+ * 1 -- otherwise
+ *
+ *-------------------------------------------------------------------------
+ */
+int
+main(int argc, char *argv[])
+{
+ char *fname = NULL;
+ char *dname = NULL;
+ hid_t fid = -1;
+ hid_t did = -1;
+ H5D_chunk_index_t idx_type;
+
+ /* h5fc_chk_idx fname dname */
+ if(argc != 3) {
+ usage();
+ HDexit(EXIT_FAILURE);
+ } /* end if */
+
+ /* Duplicate the file name & dataset name */
+ fname = HDstrdup(argv[1]);
+ dname = HDstrdup(argv[2]);
+
+ /* Try opening the file */
+ if((fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t)0)) < 0) {
+ HDfprintf(stderr, "h5fc_chk_idx: unable to open the file\n");
+ HDexit(EXIT_FAILURE);
+ } /* end if */
+
+ /* Open the dataset */
+ if((did = H5Dopen2(fid, dname, H5P_DEFAULT)) < 0) {
+ HDfprintf(stderr, "h5fc_chk_idx: unable to open the dataset\n");
+ HDexit(EXIT_FAILURE);
+ } /* end if */
+
+ /* Get the dataset's chunk indexing type */
+ if(H5Dget_chunk_index_type(did, &idx_type) < 0) {
+ HDfprintf(stderr, "h5fc_chk_idx: unable to get chunk index type for the dataset\n");
+ HDexit(EXIT_FAILURE);
+ } /* end if */
+
+ /* Close the dataset */
+ if(H5Dclose(did) < 0) {
+ HDfprintf(stderr, "h5fc_chk_idx: unable to close the dataset\n");
+ HDexit(EXIT_FAILURE);
+ } /* end if */
+
+ /* Close the file */
+ if(H5Fclose(fid) < 0) {
+ HDfprintf(stderr, "h5fc_chk_idx_type: cannot close the file\n");
+ HDexit(EXIT_FAILURE);
+ } /* end if */
+
+ /* Return success when the chunk indexing type is version 1 B-tree */
+ if(idx_type == H5D_CHUNK_IDX_BTREE)
+ HDexit(EXIT_SUCCESS);
+ else {
+ HDfprintf(stderr, "Error: chunk indexing type is %d\n", idx_type);
+ HDexit(EXIT_FAILURE);
+ } /* end if */
+
+} /* main() */
+
diff --git a/tools/h5format_convert/h5fc_gentest.c b/tools/h5format_convert/h5fc_gentest.c
new file mode 100644
index 0000000..dae57fb
--- /dev/null
+++ b/tools/h5format_convert/h5fc_gentest.c
@@ -0,0 +1,661 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Generate the binary hdf5 files for the h5format_convert tests.
+ * Usage: just execute the program without any arguments will
+ * generate all the binary hdf5 files
+ *
+ * If you regenerate the test files (e.g., changing some code,
+ * trying it on a new platform, ...), you need to verify the correctness
+ * of the expected output and update the corresponding *.ddl files.
+ */
+
+#include "hdf5.h"
+#include "H5private.h"
+
+#define NON_V3_FILE "h5fc_non_v3.h5"
+#define EDGE_V3_FILE "h5fc_edge_v3.h5"
+
+const char *FILENAME[] = {
+ "h5fc_ext1_i.h5", /* 0 */
+ "h5fc_ext1_s.h5", /* 1 */
+ "h5fc_ext1_f.h5", /* 2 */
+ "h5fc_ext2_is.h5", /* 3 */
+ "h5fc_ext2_if.h5", /* 4 */
+ "h5fc_ext2_sf.h5", /* 5 */
+ "h5fc_ext3_isf.h5", /* 6 */
+ "h5fc_ext_none.h5", /* 7 */
+ NULL
+};
+
+#define GROUP "GROUP"
+
+#define DSET_COMPACT "DSET_COMPACT"
+#define DSET_CONTIGUOUS "DSET_CONTIGUOUS"
+
+#define DSET_EA "DSET_EA"
+#define DSET_NDATA_EA "DSET_NDATA_EA"
+#define DSET_BT2 "DSET_BT2"
+#define DSET_NDATA_BT2 "DSET_NDATA_BT2"
+#define DSET_FA "DSET_FA"
+#define DSET_NDATA_FA "DSET_NDATA_FA"
+#define DSET_NONE "DSET_NONE"
+#define DSET_NDATA_NONE "DSET_NDATA_NONE"
+
+#define DSET_EDGE "DSET_EDGE"
+
+#define ISTORE_IK 64
+
+/*
+ * Function: gen_non()
+ *
+ * Create empty file with latest-format--this will result in v3 superbock
+ * Close and re-open file with non-latest-format--v3 superblock will result in latest version support:
+ * 1) 1 chunked dataset with extensible array chunk indexing type (without data)
+ * 2) 1 chunked dataset with version 2 B-tree chunk indexing type (with data)
+ * Re-open the file with write+non-latest-format and create:
+ * 3) 1 chunked dataset with version 2 B-tree chunk indexing type (without data)
+ * 4) 1 chunked dataset with extensible array indexing type (with data)
+ * 5) 1 compact and 1 contiguous datasets
+ */
+static void
+gen_non(const char *fname)
+{
+ hid_t fid = -1; /* file id */
+ hid_t fcpl = -1; /* file creation property list */
+ hid_t fapl = -1; /* file access property list */
+ hid_t gid = -1; /* group id */
+ hid_t sid = -1; /* space id */
+ hid_t dcpl = -1; /* dataset creation property id */
+ hid_t did1 = -1, did2 = -1; /* dataset id */
+ hsize_t dims1[1] = {10}; /* dataset dimension */
+ hsize_t dims2[2] = {4, 6}; /* dataset dimension */
+ hsize_t max_dims[2]; /* maximum dataset dimension */
+ hsize_t c_dims[2] = {2, 3}; /* chunk dimension */
+ int i; /* local index variable */
+ int buf[24]; /* data buffer */
+
+ if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0)
+ goto error;
+ if(H5Pset_shared_mesg_nindexes(fcpl, 4) < 0)
+ goto error;
+ if(H5Pset_istore_k(fcpl, 64) < 0)
+ goto error;
+
+ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ goto error;
+ if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
+ goto error;
+
+ /* Create an empty file with latest-format */
+ if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, fcpl, fapl)) < 0)
+ goto error;
+
+ /* Create a group */
+ if((gid = H5Gcreate2(fid, GROUP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Create data */
+ for(i = 0; i < 24; i++)
+ buf[i] = i;
+
+ /* Set chunk */
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ goto error;
+ if(H5Pset_chunk(dcpl, 2, c_dims) < 0)
+ goto error;
+
+ /*
+ * Create a chunked dataset with extensible array chunk indexing type (without data)
+ */
+
+ /* Create dataspace */
+ max_dims[0] = 10;
+ max_dims[1] = H5S_UNLIMITED;
+ if((sid = H5Screate_simple(2, dims2, max_dims)) < 0)
+ goto error;
+
+ /* Create the dataset */
+ if((did1 = H5Dcreate2(fid, DSET_NDATA_EA, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Sclose(sid) < 0)
+ goto error;
+ if(H5Dclose(did1) < 0)
+ goto error;
+
+ /*
+ * Create a chunked dataset with version 2 B-tree chunk indexing type (with data)
+ */
+
+ /* Create dataspace */
+ max_dims[0] = 10;
+ max_dims[0] = H5S_UNLIMITED;
+ max_dims[1] = H5S_UNLIMITED;
+ if((sid = H5Screate_simple(2, dims2, max_dims)) < 0)
+ goto error;
+
+ /* Create the dataset */
+ if((did1 = H5Dcreate2(gid, DSET_BT2, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Write to the dataset */
+ if(H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Sclose(sid) < 0)
+ goto error;
+ if(H5Dclose(did1) < 0)
+ goto error;
+ if(H5Pclose(dcpl) < 0)
+ goto error;
+ if(H5Gclose(gid) < 0)
+ goto error;
+
+
+ /* Open the group */
+ if((gid = H5Gopen2(fid, GROUP, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /*
+ * Create a dataset with version 2 B-btree chunk indexing type (without data)
+ */
+
+ /* Set chunk */
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ goto error;
+ if(H5Pset_chunk(dcpl, 2, c_dims) < 0)
+ goto error;
+
+ /* Create dataspace */
+ max_dims[0] = H5S_UNLIMITED;
+ max_dims[1] = H5S_UNLIMITED;
+ if((sid = H5Screate_simple(2, dims2, max_dims)) < 0)
+ goto error;
+
+ /* Create the dataset */
+ if((did1 = H5Dcreate2(fid, DSET_NDATA_BT2, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Close the dataspace */
+ if(H5Sclose(sid) < 0)
+ goto error;
+
+ /*
+ * Create a dataset with extensible array chunk indexing type (with data) in the group
+ */
+
+ /* Create dataspace */
+ max_dims[0] = 10;
+ max_dims[1] = H5S_UNLIMITED;
+ if((sid = H5Screate_simple(2, dims2, max_dims)) < 0)
+ goto error;
+
+ /* Create the dataset */
+ if((did2 = H5Dcreate2(gid, DSET_EA, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Write to the dataset */
+ if(H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Sclose(sid) < 0)
+ goto error;
+ if(H5Pclose(dcpl) < 0)
+ goto error;
+ if(H5Dclose(did1) < 0)
+ goto error;
+ if(H5Dclose(did2) < 0)
+ goto error;
+
+ /*
+ * Create a compact dataset in the group
+ */
+
+ /* Create dataspace */
+ if((sid = H5Screate_simple(1, dims1, NULL)) < 0)
+ goto error;
+
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ goto error;
+ if(H5Pset_layout(dcpl, H5D_COMPACT) < 0)
+ goto error;
+
+ /* Create the dataset */
+ if((did1 = H5Dcreate2(gid, DSET_COMPACT, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Dclose(did1) < 0)
+ goto error;
+ if(H5Pclose(dcpl) < 0)
+ goto error;
+ if(H5Sclose(sid) < 0)
+ goto error;
+
+ /*
+ * Create a contiguous dataset with (2d with data) in the file
+ */
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ goto error;
+ if(H5Pset_layout(dcpl, H5D_CONTIGUOUS) < 0)
+ goto error;
+
+ if((sid = H5Screate_simple(2, dims2, NULL)) < 0)
+ goto error;
+
+ /* Create the dataset */
+ if((did2 = H5Dcreate2(fid, DSET_CONTIGUOUS, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
+ /* Write to the dataset */
+ if(H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Dclose(did2) < 0)
+ goto error;
+ if(H5Pclose(dcpl) < 0)
+ goto error;
+ if(H5Sclose(sid) < 0)
+ goto error;
+
+ if(H5Gclose(gid) < 0)
+ goto error;
+ if(H5Pclose(fcpl) < 0)
+ goto error;
+ if(H5Pclose(fapl) < 0)
+ goto error;
+ if(H5Fclose(fid) < 0)
+ goto error;
+
+error:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ H5Dclose(did1);
+ H5Dclose(did2);
+ H5Gclose(gid);
+ H5Fclose(fcpl);
+ H5Fclose(fapl);
+ H5Fclose(fid);
+ } H5E_END_TRY;
+
+} /* gen_non() */
+
+/*
+ * Function: gen_edge()
+ *
+ * Create a file with write+latest-format--this will result in v3 superblock+latest version support:
+ * A dataset: chunked, filtered, H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS enabled
+ * (i.e. the dataset does not filter partial edge chunks)
+ */
+static void
+gen_edge(const char *fname)
+{
+ hid_t fid = -1; /* file id */
+ hid_t fapl = -1; /* file access property list */
+ hid_t sid = -1; /* dataspace id */
+ hid_t dcpl = -1; /* dataset creation property id */
+ hid_t did = -1; /* dataset id */
+ hsize_t dims2[2] = {12, 6}; /* Dataset dimensions */
+ hsize_t c_dims[2] = {5, 5}; /* Chunk dimensions */
+ float buf[12][6]; /* Buffer for writing data */
+ int i, j; /* local index variable */
+
+ /* Create a new format file */
+ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ goto error;
+ if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
+ goto error;
+ if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ goto error;
+
+ /* Set chunk, filter, no-filter-edge-chunk */
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ goto error;
+ if(H5Pset_chunk(dcpl, 2, c_dims) < 0)
+ goto error;
+ if(H5Pset_deflate(dcpl, 9) < 0)
+ goto error;
+ if(H5Pset_chunk_opts(dcpl, H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS) < 0)
+ goto error;
+
+ /* Create dataspace */
+ if((sid = H5Screate_simple(2, dims2, NULL)) < 0)
+ goto error;
+
+ /* Create the dataset */
+ if((did = H5Dcreate2(fid, DSET_EDGE, H5T_NATIVE_FLOAT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Create data */
+ for (i = 0; i< 12; i++)
+ for (j = 0; j< 6; j++)
+ buf[i][j] = 100.0F;
+
+ /* Write to the dataset */
+ if(H5Dwrite(did, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Pclose(dcpl) < 0)
+ goto error;
+ if(H5Sclose(sid) < 0)
+ goto error;
+ if(H5Dclose(did) < 0)
+ goto error;
+ if(H5Pclose(fapl) < 0)
+ goto error;
+ if(H5Fclose(fid) < 0)
+ goto error;
+
+error:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ H5Dclose(did);
+ H5Fclose(fid);
+ H5Pclose(fapl);
+ } H5E_END_TRY;
+
+} /* gen_edge() */
+
+
+/*
+ * Function: gen_ext()
+ *
+ * Create a file with/without latest format with:
+ * 1) 1 contiguous dataset (without data)
+ * 2) 2 chunked datasets with extensible array chunk indexing type (with/without data)
+ * 3) 2 chunked datasets with version 2 B-tree chunk indexing type (with/without data)
+ * 4) 2 chunked datasets with fixed array chunk indexing type (with/without data)
+ * 5) 2 chunked datasets with implicit array chunk indexing type (with/without data)
+ * It will create the file with/without messages in the superblock extension depending
+ * on the parameter "what".
+ */
+static void
+gen_ext(const char *fname, unsigned latest, unsigned what)
+{
+ hid_t fid = -1; /* file id */
+ hid_t fapl = -1; /* file access property list */
+ hid_t fcpl = -1; /* file creation property list */
+ hid_t gid = -1; /* group id */
+ hid_t sid = -1; /* space id */
+ hid_t dcpl = -1; /* dataset creation property id */
+ hid_t did1 = -1, did2 = -1; /* dataset id */
+ hsize_t dims1[1] = {10}; /* dataset dimension */
+ hsize_t dims2[2] = {4, 6}; /* dataset dimension */
+ hsize_t max_dims[2]; /* maximum dataset dimension */
+ hsize_t c_dims[2] = {2, 3}; /* chunk dimension */
+ int i; /* local index variable */
+ int buf[24]; /* data buffer */
+
+ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ goto error;
+
+ if(latest)
+ /* Create a new format file */
+ if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
+ goto error;
+
+ /* Create a file creation property list */
+ fcpl = H5Pcreate(H5P_FILE_CREATE);
+
+ /* Generate messages that might be placed in superblock extension */
+ switch(what) {
+ case 0:
+ H5Pset_istore_k(fcpl, ISTORE_IK);
+ break;
+ case 1:
+ H5Pset_shared_mesg_nindexes(fcpl, 4);
+ break;
+ case 2:
+ H5Pset_file_space(fcpl, H5F_FILE_SPACE_ALL_PERSIST, (hsize_t)0);
+ break;
+ case 3:
+ H5Pset_istore_k(fcpl, ISTORE_IK);
+ H5Pset_shared_mesg_nindexes(fcpl, 4);
+ break;
+ case 4:
+ H5Pset_istore_k(fcpl, ISTORE_IK);
+ H5Pset_file_space(fcpl, H5F_FILE_SPACE_DEFAULT, (hsize_t)2);
+ break;
+ case 5:
+ H5Pset_shared_mesg_nindexes(fcpl, 4);
+ H5Pset_file_space(fcpl, H5F_FILE_SPACE_VFD, (hsize_t)0);
+ break;
+ case 6:
+ H5Pset_istore_k(fcpl, ISTORE_IK);
+ H5Pset_shared_mesg_nindexes(fcpl, 4);
+ H5Pset_file_space(fcpl, H5F_FILE_SPACE_AGGR_VFD, (hsize_t)0);
+ break;
+ default:
+ break;
+ }
+
+ /* Create the file */
+ if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, fcpl, fapl)) < 0)
+ goto error;
+
+ /* Create a group */
+ if((gid = H5Gcreate2(fid, GROUP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Set chunk */
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ goto error;
+ if(H5Pset_chunk(dcpl, 2, c_dims) < 0)
+ goto error;
+
+
+ /*
+ * Create a contiguous dataset
+ */
+
+ /* Create dataspace */
+ if((sid = H5Screate_simple(1, dims1, NULL)) < 0)
+ goto error;
+
+ /* Create the dataset */
+ if((did1 = H5Dcreate2(fid, DSET_CONTIGUOUS, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Sclose(sid) < 0)
+ goto error;
+ if(H5Dclose(did1) < 0)
+ goto error;
+
+ /*
+ * Create 2 chunked datasets with extensible array chunk indexing type
+ * (one with data; one without data)
+ */
+
+ /* Create dataspace */
+ max_dims[0] = 10;
+ max_dims[1] = H5S_UNLIMITED;
+ if((sid = H5Screate_simple(2, dims2, max_dims)) < 0)
+ goto error;
+
+ /* Create the 2 datasets */
+ if((did1 = H5Dcreate2(gid, DSET_NDATA_EA, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ if((did2 = H5Dcreate2(fid, DSET_EA, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Create data */
+ for(i = 0; i < 24; i++)
+ buf[i] = i;
+
+ /* Write to one dataset */
+ if(H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Sclose(sid) < 0)
+ goto error;
+ if(H5Dclose(did1) < 0)
+ goto error;
+ if(H5Dclose(did2) < 0)
+ goto error;
+
+
+ /*
+ * Create 2 chunked datasets with version 2 B-tree chunk indexing type
+ * (one with data; one without data)
+ */
+
+ /* Create dataspace */
+ max_dims[0] = 10;
+ max_dims[0] = H5S_UNLIMITED;
+ max_dims[1] = H5S_UNLIMITED;
+ if((sid = H5Screate_simple(2, dims2, max_dims)) < 0)
+ goto error;
+
+ /* Create the 2 datasets */
+ if((did1 = H5Dcreate2(fid, DSET_NDATA_BT2, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ if((did2 = H5Dcreate2(gid, DSET_BT2, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Write to one dataset */
+ if(H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Sclose(sid) < 0)
+ goto error;
+ if(H5Dclose(did1) < 0)
+ goto error;
+ if(H5Dclose(did2) < 0)
+ goto error;
+
+ /*
+ * Create 2 chunked datasets with fixed array chunk indexing type
+ * (one with data; one without data)
+ */
+
+ /* Create dataspace */
+ max_dims[0] = 20;
+ max_dims[1] = 10;
+ if((sid = H5Screate_simple(2, dims2, max_dims)) < 0)
+ goto error;
+
+ /* Create the datasets */
+ if((did1 = H5Dcreate2(fid, DSET_FA, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ if((did2 = H5Dcreate2(gid, DSET_NDATA_FA, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Write to the dataset */
+ if(H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Sclose(sid) < 0)
+ goto error;
+ if(H5Dclose(did1) < 0)
+ goto error;
+ if(H5Dclose(did2) < 0)
+ goto error;
+
+
+ /*
+ * Create 2 chunked datasets with implicit chunk indexing type
+ * (one with data; one without data)
+ */
+
+ /* Create dataspace */
+ if((sid = H5Screate_simple(2, dims2, NULL)) < 0)
+ goto error;
+
+ /* Set early allocation */
+ if(H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
+ goto error;
+
+ /* Create the 2 datasets */
+ if((did1 = H5Dcreate2(fid, DSET_NONE, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ if((did2 = H5Dcreate2(gid, DSET_NDATA_NONE, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Write to one dataset */
+ if(H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
+ goto error;
+
+ /* Closing */
+ if(H5Dclose(did1) < 0)
+ goto error;
+ if(H5Dclose(did2) < 0)
+ goto error;
+ if(H5Sclose(sid) < 0)
+ goto error;
+
+ if(H5Pclose(dcpl) < 0)
+ goto error;
+ if(H5Gclose(gid) < 0)
+ goto error;
+ if(H5Fclose(fid) < 0)
+ goto error;
+
+error:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ H5Dclose(did1);
+ H5Dclose(did2);
+ H5Gclose(gid);
+ H5Fclose(fid);
+ H5Pclose(fapl);
+ H5Pclose(fcpl);
+ } H5E_END_TRY;
+
+} /* gen_ext() */
+
+int main(void)
+{
+ unsigned i, latest;
+
+ /* Generate a non-latest-format file with v3 superblock */
+ gen_non(NON_V3_FILE);
+
+ /* Generate a new format file with a no-filter-edge-chunk dataset */
+ gen_edge(EDGE_V3_FILE);
+
+ /* Generate old/new format file with/without messages in the superblock extension */
+ for(latest = FALSE; latest <= TRUE; latest++) {
+ for(i = 0; i < 8; i++) {
+ char filename[50];
+
+ HDmemset(filename, 0, sizeof(filename));
+ if(!latest)
+ HDstrcat(filename, "old_");
+ HDstrcat(filename, FILENAME[i]);
+
+ gen_ext(filename, latest, i);
+ }
+ } /* end for latest */
+
+ return 0;
+}
+
diff --git a/tools/h5format_convert/h5format_convert.c b/tools/h5format_convert/h5format_convert.c
new file mode 100644
index 0000000..1098d35
--- /dev/null
+++ b/tools/h5format_convert/h5format_convert.c
@@ -0,0 +1,474 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Vailin Choi; Feb 2015
+ */
+
+
+/*
+ * We include the private header file so we can get to the uniform
+ * programming environment it declares.
+ * HDF5 API functions (except for H5G_basename())
+ */
+#include "H5private.h"
+#include "h5tools.h"
+#include "h5tools_utils.h"
+#include "h5trav.h"
+
+/* Name of tool */
+#define PROGRAMNAME "h5format_convert"
+
+static char *fname_g = NULL;
+static char *dname_g = NULL;
+static int dset_g = FALSE;
+static int noop_g = FALSE;
+static int verbose_g = 0;
+
+/*
+ * Command-line options: The user can specify short or long-named
+ * parameters.
+ */
+static const char *s_opts = "hVvd:n";
+static struct long_options l_opts[] = {
+ { "help", no_arg, 'h' },
+ { "hel", no_arg, 'h'},
+ { "he", no_arg, 'h'},
+ { "version", no_arg, 'V' },
+ { "version", no_arg, 'V' },
+ { "versio", no_arg, 'V' },
+ { "versi", no_arg, 'V' },
+ { "vers", no_arg, 'V' },
+ { "verbose", no_arg, 'v' },
+ { "verbos", no_arg, 'v' },
+ { "verbo", no_arg, 'v' },
+ { "verb", no_arg, 'v' },
+ { "dname", require_arg, 'd' },
+ { "dnam", require_arg, 'd' },
+ { "dna", require_arg, 'd' },
+ { "dn", require_arg, 'd' },
+ { "noop", no_arg, 'n' },
+ { "noo", no_arg, 'n' },
+ { "no", no_arg, 'n' },
+ { NULL, 0, '\0' }
+};
+
+
+/*-------------------------------------------------------------------------
+ * Function: usage
+ *
+ * Purpose: print usage
+ *
+ * Return: void
+ *
+ *-------------------------------------------------------------------------
+ */
+static void usage(const char *prog)
+{
+ HDfprintf(stdout, "usage: %s [OPTIONS] file_name\n", prog);
+ HDfprintf(stdout, " OPTIONS\n");
+ HDfprintf(stdout, " -h, --help Print a usage message and exit\n");
+ HDfprintf(stdout, " -V, --version Print version number and exit\n");
+ HDfprintf(stdout, " -v, --verbose Turn on verbose mode\n");
+ HDfprintf(stdout, " -d dname, --dname=dataset_name Pathname for the dataset\n");
+ HDfprintf(stdout, " -n, --noop Perform all the steps except the actual conversion\n");
+ HDfprintf(stdout, "\n");
+ HDfprintf(stdout, "Examples of use:\n");
+ HDfprintf(stdout, "\n");
+ HDfprintf(stdout, "h5format_convert -d /group/dataset file_name\n");
+ HDfprintf(stdout, " Convert the dataset </group/dataset> in the HDF5 file <file_name>:\n");
+ HDfprintf(stdout, " a. chunked dataset: convert the chunk indexing type to version 1 B-tree\n");
+ HDfprintf(stdout, " b. compact/contiguous dataset: downgrade the layout version to 3\n");
+ HDfprintf(stdout, " c. virtual dataset: no action\n");
+ HDfprintf(stdout, "\n");
+ HDfprintf(stdout, "h5format_convert file_name\n");
+ HDfprintf(stdout, " Convert all datasets in the HDF5 file <file_name>:\n");
+ HDfprintf(stdout, " a. chunked dataset: convert the chunk indexing type to version 1 B-tree\n");
+ HDfprintf(stdout, " b. compact/contiguous dataset: downgrade the layout version to 3\n");
+ HDfprintf(stdout, " c. virtual dataset: no action\n");
+ HDfprintf(stdout, "\n");
+ HDfprintf(stdout, "h5format_convert -n -d /group/dataset file_name\n");
+ HDfprintf(stdout, " Go through all the steps except the actual conversion when \n");
+ HDfprintf(stdout, " converting the dataset </group/dataset> in the HDF5 file <file_name>.\n");
+} /* usage() */
+
+/*-------------------------------------------------------------------------
+ * Function: parse_command_line
+ *
+ * Purpose: parse command line input
+ *
+ * Return: Success: 0
+ * Failure: 1
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+parse_command_line(int argc, const char **argv)
+{
+ int opt;
+
+ /* no arguments */
+ if (argc == 1) {
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_FAILURE);
+ goto error;
+ }
+
+ /* parse command line options */
+ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
+ switch((char) opt) {
+ case 'h':
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto error;
+
+ case 'V':
+ print_version(h5tools_getprogname());
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto error;
+
+ case 'v':
+ verbose_g = TRUE;
+ break;
+
+ case 'd': /* -d dname */
+ if(opt_arg != NULL && *opt_arg)
+ dname_g = HDstrdup(opt_arg);
+ if(dname_g == NULL) {
+ h5tools_setstatus(EXIT_FAILURE);
+ error_msg("No dataset name\n", opt_arg);
+ usage(h5tools_getprogname());
+ goto error;
+ }
+ dset_g = TRUE;
+ break;
+
+ case 'n': /* -n */
+ noop_g = TRUE;
+ break;
+
+ default:
+ h5tools_setstatus(EXIT_FAILURE);
+ usage(h5tools_getprogname());
+ goto error;
+ break;
+ } /* switch */
+ } /* while */
+
+ if (argc <= opt_ind) {
+ error_msg("missing file name\n");
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_FAILURE);
+ goto error;
+ }
+
+ fname_g = HDstrdup(argv[opt_ind]);
+
+ return(0);
+
+error:
+ return(-1); ;
+} /* parse_command_line() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: leave
+ *
+ * Purpose: Close HDF5
+ *
+ * Return: Does not return
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+leave(int ret)
+{
+ h5tools_close();
+
+ HDexit(ret);
+} /* leave() */
+
+/*-------------------------------------------------------------------------
+ * Function: convert()
+ *
+ * Purpose: To downgrade a dataset's indexing type or layout version:
+ * For chunked:
+ * Downgrade the chunk indexing type to version 1 B-tree
+ * If type is already version 1 B-tree, no further action
+ * For compact/contiguous:
+ * Downgrade the layout version from 4 to 3
+ * If version is already <= 3, no further action
+ * For virtual:
+ * No further action
+ *
+ * Return: Success: 0
+ * Failure: 1
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+convert(hid_t fid, const char *dname)
+{
+ hid_t dcpl = -1;
+ hid_t did = -1;
+ H5D_layout_t layout_type;
+ H5D_chunk_index_t idx_type;
+
+ /* Open the dataset */
+ if((did = H5Dopen2(fid, dname, H5P_DEFAULT)) < 0) {
+ error_msg("unable to open dataset \"%s\"\n", dname);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto error;
+
+ } else if(verbose_g)
+ HDfprintf(stdout, "Open the dataset\n");
+
+ /* Get the dataset's creation property list */
+ if((dcpl = H5Dget_create_plist(did)) < 0) {
+ error_msg("unable to get the dataset creation property list\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ goto error;
+ }
+
+ /* Get the dataset's layout */
+ if((layout_type = H5Pget_layout(dcpl)) < 0) {
+ error_msg("unable to get the dataset layout type\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ goto error;
+
+ } else if(verbose_g)
+ HDfprintf(stdout, "Retrieve the dataset's layout\n");
+
+ switch(layout_type) {
+ case H5D_CHUNKED:
+ if(verbose_g)
+ HDfprintf(stdout, "Dataset is a chunked dataset\n");
+
+ /* Get the dataset's chunk indexing type */
+ if(H5Dget_chunk_index_type(did, &idx_type) < 0) {
+ error_msg("unable to get the chunk indexing type for \"%s\"\n", dname);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto error;
+ } else if(verbose_g)
+ HDfprintf(stdout, "Retrieve the dataset's chunk indexing type\n");
+
+ if(idx_type == H5D_CHUNK_IDX_BTREE) {
+ if(verbose_g)
+ HDfprintf(stdout, "Dataset's chunk indexing type is already version 1 B-tree: no further action\n");
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto done;
+ } else if (verbose_g)
+ HDfprintf(stdout, "Dataset's chunk indexing type is not version 1 B-tree\n");
+ break;
+
+ case H5D_CONTIGUOUS:
+ if(verbose_g)
+ HDfprintf(stdout, "Dataset is a contiguous dataset: downgrade layout version as needed\n");
+ break;
+
+ case H5D_COMPACT:
+ if(verbose_g)
+ HDfprintf(stdout, "Dataset is a compact dataset: downgrade layout version as needed\n");
+ break;
+
+ case H5D_VIRTUAL:
+ if(verbose_g)
+ HDfprintf(stdout, "No further action for virtual dataset\n");
+ goto done;
+
+ case H5D_NLAYOUTS:
+ case H5D_LAYOUT_ERROR:
+ default:
+ error_msg("unknown layout type for \"%s\"\n", dname);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto error;
+
+ } /* end switch */
+
+ /* No further action if it is a noop */
+ if(noop_g) {
+ if(verbose_g)
+ HDfprintf(stdout, "Not converting the dataset\n");
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto done;
+ }
+
+ if(verbose_g)
+ HDfprintf(stdout, "Converting the dataset...\n");
+
+ /* Downgrade the dataset */
+ if(H5Dformat_convert(did) < 0) {
+ error_msg("unable to downgrade dataset for \"%s\"\n", dname);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto error;
+ } else if(verbose_g)
+ HDfprintf(stdout, "Done\n");
+
+done:
+ /* Close the dataset */
+ if(H5Dclose(did) < 0) {
+ error_msg("unable to close dataset \"%s\"\n", dname);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto error;
+ } else if(verbose_g)
+ HDfprintf(stdout, "Close the dataset\n");
+
+ /* Close the dataset creation property list */
+ if(H5Pclose(dcpl) < 0) {
+ error_msg("unable to close dataset creation property list\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ goto error;
+ } else if(verbose_g)
+ printf("Close the dataset creation property list\n");
+
+ return(0);
+
+error:
+ if(verbose_g)
+ HDfprintf(stdout, "Error encountered\n");
+
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Dclose(did);
+ } H5E_END_TRY;
+
+ return(-1);
+} /* convert() */
+
+/*-------------------------------------------------------------------------
+ * Function: convert_dsets_cb()
+ *
+ * Purpose: The callback routine from the traversal to convert the
+ * chunk indexing type of the dataset object.
+ *
+ * Return: Success: 0
+ * Failure: 1
+ *-------------------------------------------------------------------------
+ */
+static int
+convert_dsets_cb(const char *path, const H5O_info_t *oi, const char *already_visited, void *_fid)
+{
+ hid_t fid = *(hid_t *)_fid;
+
+ /* If the object has already been seen then just return */
+ if(NULL == already_visited) {
+ if(oi->type == H5O_TYPE_DATASET) {
+ if(verbose_g)
+ HDfprintf(stdout, "Going to process dataset:%s...\n", path);
+ if(convert(fid, path) < 0)
+ goto error;
+ } /* end if */
+ } /* end if */
+
+ return 0;
+
+error:
+ return -1;
+} /* end convert_dsets_cb() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: main
+ *
+ * Purpose: To convert the chunk indexing type of a dataset in a file to
+ * version 1 B-tree.
+ *
+ * Return: Success: 0
+ * Failure: 1
+ *
+ *-------------------------------------------------------------------------
+ */
+int
+main(int argc, const char *argv[])
+{
+ H5E_auto2_t func;
+ void *edata;
+ hid_t fid = -1;
+
+ h5tools_setprogname(PROGRAMNAME);
+ h5tools_setstatus(EXIT_SUCCESS);
+
+ /* Disable error reporting */
+ H5Eget_auto2(H5E_DEFAULT, &func, &edata);
+ H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
+
+ /* Initialize h5tools lib */
+ h5tools_init();
+
+ /* Parse command line options */
+ if(parse_command_line(argc, argv) < 0)
+ goto done;
+ else if(verbose_g)
+ HDfprintf(stdout, "Process command line options\n");
+
+ if(noop_g && verbose_g)
+ HDfprintf(stdout, "It is noop...\n");
+
+ /* Open the HDF5 file */
+ if((fid = h5tools_fopen(fname_g, H5F_ACC_RDWR, H5P_DEFAULT, NULL, NULL, 0)) < 0) {
+ error_msg("unable to open file \"%s\"\n", fname_g);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ } else if(verbose_g)
+ HDfprintf(stdout, "Open the file %s\n", fname_g);
+
+ if(dset_g) { /* Convert a specified dataset in the file */
+ if(verbose_g)
+ HDfprintf(stdout, "Going to process dataset: %s...\n", dname_g);
+ if(convert(fid, dname_g) < 0)
+ goto done;
+ } else { /* Convert all datasets in the file */
+ if(verbose_g)
+ HDfprintf(stdout, "Processing all datasets in the file...\n");
+ if(h5trav_visit(fid, "/", TRUE, TRUE, convert_dsets_cb, NULL, &fid) < 0)
+ goto done;
+ } /* end else */
+
+ if(verbose_g) {
+ if(noop_g) {
+ HDfprintf(stdout, "Not processing the file's superblock...\n");
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto done;
+ } /* end if */
+ HDfprintf(stdout, "Processing the file's superblock...\n");
+ } /* end if */
+
+ /* Process superblock */
+ if(H5Fformat_convert(fid) < 0) {
+ error_msg("unable to convert file's superblock\"%s\"\n", fname_g);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ } /* end if */
+
+done:
+ /* Close the file */
+ if(fid >= 0) {
+ if(H5Fclose(fid) < 0) {
+ error_msg("unable to close file \"%s\"\n", fname_g);
+ h5tools_setstatus(EXIT_FAILURE);
+ } else if(verbose_g)
+ HDfprintf(stdout, "Close the file\n");
+ } /* end if */
+
+ if(fname_g)
+ HDfree(fname_g);
+ if(dname_g)
+ HDfree(dname_g);
+
+ H5Eset_auto2(H5E_DEFAULT, func, edata);
+ leave(h5tools_getstatus());
+
+} /* end main() */
+
diff --git a/tools/h5format_convert/testfiles/h5fc_d_file.ddl b/tools/h5format_convert/testfiles/h5fc_d_file.ddl
new file mode 100644
index 0000000..ad7a2f4
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_d_file.ddl
@@ -0,0 +1,26 @@
+usage: h5format_convert [OPTIONS] file_name
+ OPTIONS
+ -h, --help Print a usage message and exit
+ -V, --version Print version number and exit
+ -v, --verbose Turn on verbose mode
+ -d dname, --dname=dataset_name Pathname for the dataset
+ -n, --noop Perform all the steps except the actual conversion
+
+Examples of use:
+
+h5format_convert -d /group/dataset file_name
+ Convert the dataset </group/dataset> in the HDF5 file <file_name>:
+ a. chunked dataset: convert the chunk indexing type to version 1 B-tree
+ b. compact/contiguous dataset: downgrade the layout version to 3
+ c. virtual dataset: no action
+
+h5format_convert file_name
+ Convert all datasets in the HDF5 file <file_name>:
+ a. chunked dataset: convert the chunk indexing type to version 1 B-tree
+ b. compact/contiguous dataset: downgrade the layout version to 3
+ c. virtual dataset: no action
+
+h5format_convert -n -d /group/dataset file_name
+ Go through all the steps except the actual conversion when
+ converting the dataset </group/dataset> in the HDF5 file <file_name>.
+h5format_convert error: missing file name
diff --git a/tools/h5format_convert/testfiles/h5fc_dname.ddl b/tools/h5format_convert/testfiles/h5fc_dname.ddl
new file mode 100644
index 0000000..0de42cb
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_dname.ddl
@@ -0,0 +1,26 @@
+usage: h5format_convert [OPTIONS] file_name
+ OPTIONS
+ -h, --help Print a usage message and exit
+ -V, --version Print version number and exit
+ -v, --verbose Turn on verbose mode
+ -d dname, --dname=dataset_name Pathname for the dataset
+ -n, --noop Perform all the steps except the actual conversion
+
+Examples of use:
+
+h5format_convert -d /group/dataset file_name
+ Convert the dataset </group/dataset> in the HDF5 file <file_name>:
+ a. chunked dataset: convert the chunk indexing type to version 1 B-tree
+ b. compact/contiguous dataset: downgrade the layout version to 3
+ c. virtual dataset: no action
+
+h5format_convert file_name
+ Convert all datasets in the HDF5 file <file_name>:
+ a. chunked dataset: convert the chunk indexing type to version 1 B-tree
+ b. compact/contiguous dataset: downgrade the layout version to 3
+ c. virtual dataset: no action
+
+h5format_convert -n -d /group/dataset file_name
+ Go through all the steps except the actual conversion when
+ converting the dataset </group/dataset> in the HDF5 file <file_name>.
+h5format_convert error: No dataset name
diff --git a/tools/h5format_convert/testfiles/h5fc_edge_v3.h5 b/tools/h5format_convert/testfiles/h5fc_edge_v3.h5
new file mode 100644
index 0000000..ac7dbd3
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_edge_v3.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/h5fc_ext1_f.ddl b/tools/h5format_convert/testfiles/h5fc_ext1_f.ddl
new file mode 100644
index 0000000..fb5192d
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext1_f.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 32
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/h5fc_ext1_f.h5 b/tools/h5format_convert/testfiles/h5fc_ext1_f.h5
new file mode 100644
index 0000000..68ba2ac
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext1_f.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/h5fc_ext1_i.ddl b/tools/h5format_convert/testfiles/h5fc_ext1_i.ddl
new file mode 100644
index 0000000..2fff4ac
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext1_i.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 64
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/h5fc_ext1_i.h5 b/tools/h5format_convert/testfiles/h5fc_ext1_i.h5
new file mode 100644
index 0000000..1a58089
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext1_i.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/h5fc_ext1_s.ddl b/tools/h5format_convert/testfiles/h5fc_ext1_s.ddl
new file mode 100644
index 0000000..fb5192d
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext1_s.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 32
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/h5fc_ext1_s.h5 b/tools/h5format_convert/testfiles/h5fc_ext1_s.h5
new file mode 100644
index 0000000..26e9b25
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext1_s.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/h5fc_ext2_if.ddl b/tools/h5format_convert/testfiles/h5fc_ext2_if.ddl
new file mode 100644
index 0000000..2fff4ac
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext2_if.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 64
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/h5fc_ext2_if.h5 b/tools/h5format_convert/testfiles/h5fc_ext2_if.h5
new file mode 100644
index 0000000..e5c5e25
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext2_if.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/h5fc_ext2_is.ddl b/tools/h5format_convert/testfiles/h5fc_ext2_is.ddl
new file mode 100644
index 0000000..2fff4ac
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext2_is.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 64
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/h5fc_ext2_is.h5 b/tools/h5format_convert/testfiles/h5fc_ext2_is.h5
new file mode 100644
index 0000000..0e3eca7
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext2_is.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/h5fc_ext2_sf.ddl b/tools/h5format_convert/testfiles/h5fc_ext2_sf.ddl
new file mode 100644
index 0000000..fb5192d
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext2_sf.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 32
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/h5fc_ext2_sf.h5 b/tools/h5format_convert/testfiles/h5fc_ext2_sf.h5
new file mode 100644
index 0000000..cb15f03
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext2_sf.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/h5fc_ext3_isf.ddl b/tools/h5format_convert/testfiles/h5fc_ext3_isf.ddl
new file mode 100644
index 0000000..2fff4ac
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext3_isf.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 64
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/h5fc_ext3_isf.h5 b/tools/h5format_convert/testfiles/h5fc_ext3_isf.h5
new file mode 100644
index 0000000..d46cef4
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext3_isf.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/h5fc_ext_none.h5 b/tools/h5format_convert/testfiles/h5fc_ext_none.h5
new file mode 100644
index 0000000..defbcb3
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_ext_none.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/h5fc_help.ddl b/tools/h5format_convert/testfiles/h5fc_help.ddl
new file mode 100644
index 0000000..aef8c63
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_help.ddl
@@ -0,0 +1,25 @@
+usage: h5format_convert [OPTIONS] file_name
+ OPTIONS
+ -h, --help Print a usage message and exit
+ -V, --version Print version number and exit
+ -v, --verbose Turn on verbose mode
+ -d dname, --dname=dataset_name Pathname for the dataset
+ -n, --noop Perform all the steps except the actual conversion
+
+Examples of use:
+
+h5format_convert -d /group/dataset file_name
+ Convert the dataset </group/dataset> in the HDF5 file <file_name>:
+ a. chunked dataset: convert the chunk indexing type to version 1 B-tree
+ b. compact/contiguous dataset: downgrade the layout version to 3
+ c. virtual dataset: no action
+
+h5format_convert file_name
+ Convert all datasets in the HDF5 file <file_name>:
+ a. chunked dataset: convert the chunk indexing type to version 1 B-tree
+ b. compact/contiguous dataset: downgrade the layout version to 3
+ c. virtual dataset: no action
+
+h5format_convert -n -d /group/dataset file_name
+ Go through all the steps except the actual conversion when
+ converting the dataset </group/dataset> in the HDF5 file <file_name>.
diff --git a/tools/h5format_convert/testfiles/h5fc_non_v3.h5 b/tools/h5format_convert/testfiles/h5fc_non_v3.h5
new file mode 100644
index 0000000..58a340d
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_non_v3.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl b/tools/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl
new file mode 100644
index 0000000..39450c0
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl
@@ -0,0 +1 @@
+h5format_convert error: unable to open dataset "nonexist"
diff --git a/tools/h5format_convert/testfiles/h5fc_nonexistfile.ddl b/tools/h5format_convert/testfiles/h5fc_nonexistfile.ddl
new file mode 100644
index 0000000..706ea9d
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_nonexistfile.ddl
@@ -0,0 +1 @@
+h5format_convert error: unable to open file "nonexist.h5"
diff --git a/tools/h5format_convert/testfiles/h5fc_nooption.ddl b/tools/h5format_convert/testfiles/h5fc_nooption.ddl
new file mode 100644
index 0000000..aef8c63
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_nooption.ddl
@@ -0,0 +1,25 @@
+usage: h5format_convert [OPTIONS] file_name
+ OPTIONS
+ -h, --help Print a usage message and exit
+ -V, --version Print version number and exit
+ -v, --verbose Turn on verbose mode
+ -d dname, --dname=dataset_name Pathname for the dataset
+ -n, --noop Perform all the steps except the actual conversion
+
+Examples of use:
+
+h5format_convert -d /group/dataset file_name
+ Convert the dataset </group/dataset> in the HDF5 file <file_name>:
+ a. chunked dataset: convert the chunk indexing type to version 1 B-tree
+ b. compact/contiguous dataset: downgrade the layout version to 3
+ c. virtual dataset: no action
+
+h5format_convert file_name
+ Convert all datasets in the HDF5 file <file_name>:
+ a. chunked dataset: convert the chunk indexing type to version 1 B-tree
+ b. compact/contiguous dataset: downgrade the layout version to 3
+ c. virtual dataset: no action
+
+h5format_convert -n -d /group/dataset file_name
+ Go through all the steps except the actual conversion when
+ converting the dataset </group/dataset> in the HDF5 file <file_name>.
diff --git a/tools/h5format_convert/testfiles/h5fc_v_all.ddl b/tools/h5format_convert/testfiles/h5fc_v_all.ddl
new file mode 100644
index 0000000..5e7365d
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_v_all.ddl
@@ -0,0 +1,77 @@
+Process command line options
+Open the file tmp.h5
+Processing all datasets in the file...
+Going to process dataset:/DSET_CONTIGUOUS...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a contiguous dataset: downgrade layout version as needed
+Converting the dataset...
+Done
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/DSET_EA...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is already version 1 B-tree: no further action
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/DSET_FA...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is already version 1 B-tree: no further action
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/DSET_NDATA_BT2...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is already version 1 B-tree: no further action
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/DSET_NONE...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is already version 1 B-tree: no further action
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/GROUP/DSET_BT2...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is already version 1 B-tree: no further action
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/GROUP/DSET_NDATA_EA...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is already version 1 B-tree: no further action
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/GROUP/DSET_NDATA_FA...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is already version 1 B-tree: no further action
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/GROUP/DSET_NDATA_NONE...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is already version 1 B-tree: no further action
+Close the dataset
+Close the dataset creation property list
+Processing the file's superblock...
+Close the file
diff --git a/tools/h5format_convert/testfiles/h5fc_v_bt1.ddl b/tools/h5format_convert/testfiles/h5fc_v_bt1.ddl
new file mode 100644
index 0000000..c501eb0
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_v_bt1.ddl
@@ -0,0 +1,12 @@
+Process command line options
+Open the file tmp.h5
+Going to process dataset: /GROUP/DSET_BT2...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is already version 1 B-tree: no further action
+Close the dataset
+Close the dataset creation property list
+Processing the file's superblock...
+Close the file
diff --git a/tools/h5format_convert/testfiles/h5fc_v_n_1d.ddl b/tools/h5format_convert/testfiles/h5fc_v_n_1d.ddl
new file mode 100644
index 0000000..ff5da4a
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_v_n_1d.ddl
@@ -0,0 +1,14 @@
+Process command line options
+It is noop...
+Open the file tmp.h5
+Going to process dataset: /DSET_EA...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is not version 1 B-tree
+Not converting the dataset
+Close the dataset
+Close the dataset creation property list
+Not processing the file's superblock...
+Close the file
diff --git a/tools/h5format_convert/testfiles/h5fc_v_n_all.ddl b/tools/h5format_convert/testfiles/h5fc_v_n_all.ddl
new file mode 100644
index 0000000..d2ffbbf
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_v_n_all.ddl
@@ -0,0 +1,56 @@
+Process command line options
+It is noop...
+Open the file tmp.h5
+Processing all datasets in the file...
+Going to process dataset:/DSET_CONTIGUOUS...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a contiguous dataset: downgrade layout version as needed
+Not converting the dataset
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/DSET_NDATA_BT2...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is not version 1 B-tree
+Not converting the dataset
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/DSET_NDATA_EA...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is not version 1 B-tree
+Not converting the dataset
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/GROUP/DSET_BT2...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is not version 1 B-tree
+Not converting the dataset
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/GROUP/DSET_COMPACT...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a contiguous dataset: downgrade layout version as needed
+Not converting the dataset
+Close the dataset
+Close the dataset creation property list
+Going to process dataset:/GROUP/DSET_EA...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is not version 1 B-tree
+Not converting the dataset
+Close the dataset
+Close the dataset creation property list
+Not processing the file's superblock...
+Close the file
diff --git a/tools/h5format_convert/testfiles/h5fc_v_ndata_bt1.ddl b/tools/h5format_convert/testfiles/h5fc_v_ndata_bt1.ddl
new file mode 100644
index 0000000..ba794a7
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_v_ndata_bt1.ddl
@@ -0,0 +1,13 @@
+Process command line options
+It is noop...
+Open the file tmp.h5
+Going to process dataset: /DSET_NDATA_BT2...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a chunked dataset
+Retrieve the dataset's chunk indexing type
+Dataset's chunk indexing type is already version 1 B-tree: no further action
+Close the dataset
+Close the dataset creation property list
+Not processing the file's superblock...
+Close the file
diff --git a/tools/h5format_convert/testfiles/h5fc_v_non_chunked.ddl b/tools/h5format_convert/testfiles/h5fc_v_non_chunked.ddl
new file mode 100644
index 0000000..aba0740
--- /dev/null
+++ b/tools/h5format_convert/testfiles/h5fc_v_non_chunked.ddl
@@ -0,0 +1,12 @@
+Process command line options
+Open the file tmp.h5
+Going to process dataset: /DSET_CONTIGUOUS...
+Open the dataset
+Retrieve the dataset's layout
+Dataset is a contiguous dataset: downgrade layout version as needed
+Converting the dataset...
+Done
+Close the dataset
+Close the dataset creation property list
+Processing the file's superblock...
+Close the file
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext1_f.ddl b/tools/h5format_convert/testfiles/old_h5fc_ext1_f.ddl
new file mode 100644
index 0000000..fb5192d
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext1_f.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 32
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext1_f.h5 b/tools/h5format_convert/testfiles/old_h5fc_ext1_f.h5
new file mode 100644
index 0000000..3cbc7f4
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext1_f.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext1_i.ddl b/tools/h5format_convert/testfiles/old_h5fc_ext1_i.ddl
new file mode 100644
index 0000000..c906082
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext1_i.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 1
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 64
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext1_i.h5 b/tools/h5format_convert/testfiles/old_h5fc_ext1_i.h5
new file mode 100644
index 0000000..a2c9187
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext1_i.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext1_s.ddl b/tools/h5format_convert/testfiles/old_h5fc_ext1_s.ddl
new file mode 100644
index 0000000..fb5192d
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext1_s.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 32
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext1_s.h5 b/tools/h5format_convert/testfiles/old_h5fc_ext1_s.h5
new file mode 100644
index 0000000..fdf4f33
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext1_s.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext2_if.ddl b/tools/h5format_convert/testfiles/old_h5fc_ext2_if.ddl
new file mode 100644
index 0000000..2fff4ac
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext2_if.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 64
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext2_if.h5 b/tools/h5format_convert/testfiles/old_h5fc_ext2_if.h5
new file mode 100644
index 0000000..6bf0a2f
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext2_if.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext2_is.ddl b/tools/h5format_convert/testfiles/old_h5fc_ext2_is.ddl
new file mode 100644
index 0000000..2fff4ac
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext2_is.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 64
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext2_is.h5 b/tools/h5format_convert/testfiles/old_h5fc_ext2_is.h5
new file mode 100644
index 0000000..c0c7ecc
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext2_is.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext2_sf.ddl b/tools/h5format_convert/testfiles/old_h5fc_ext2_sf.ddl
new file mode 100644
index 0000000..fb5192d
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext2_sf.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 32
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext2_sf.h5 b/tools/h5format_convert/testfiles/old_h5fc_ext2_sf.h5
new file mode 100644
index 0000000..055cabf
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext2_sf.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext3_isf.ddl b/tools/h5format_convert/testfiles/old_h5fc_ext3_isf.ddl
new file mode 100644
index 0000000..2fff4ac
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext3_isf.ddl
@@ -0,0 +1,58 @@
+HDF5 "./testfiles/tmp.h5" {
+SUPER_BLOCK {
+ SUPERBLOCK_VERSION 2
+ FREELIST_VERSION 0
+ SYMBOLTABLE_VERSION 0
+ OBJECTHEADER_VERSION 0
+ OFFSET_SIZE 8
+ LENGTH_SIZE 8
+ BTREE_RANK 16
+ BTREE_LEAF 4
+ ISTORE_K 64
+ FILE_SPACE_STRATEGY H5F_FILE_SPACE_ALL
+ FREE_SPACE_THRESHOLD 1
+ USER_BLOCK {
+ USERBLOCK_SIZE 0
+ }
+}
+GROUP "/" {
+ DATASET "DSET_CONTIGUOUS" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
+ }
+ DATASET "DSET_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ GROUP "GROUP" {
+ DATASET "DSET_BT2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( H5S_UNLIMITED, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_EA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 10, H5S_UNLIMITED ) }
+ }
+ DATASET "DSET_NDATA_FA" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 20, 10 ) }
+ }
+ DATASET "DSET_NDATA_NONE" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
+ }
+ }
+}
+}
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext3_isf.h5 b/tools/h5format_convert/testfiles/old_h5fc_ext3_isf.h5
new file mode 100644
index 0000000..f4caaf4
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext3_isf.h5
Binary files differ
diff --git a/tools/h5format_convert/testfiles/old_h5fc_ext_none.h5 b/tools/h5format_convert/testfiles/old_h5fc_ext_none.h5
new file mode 100644
index 0000000..d0bf344
--- /dev/null
+++ b/tools/h5format_convert/testfiles/old_h5fc_ext_none.h5
Binary files differ
diff --git a/tools/h5format_convert/testh5fc.sh.in b/tools/h5format_convert/testh5fc.sh.in
new file mode 100644
index 0000000..f712434
--- /dev/null
+++ b/tools/h5format_convert/testh5fc.sh.in
@@ -0,0 +1,494 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+# Tests for the h5format_convert tool
+#
+#
+
+srcdir=@srcdir@
+
+# Determine which filters are available
+USE_FILTER_SZIP="@USE_FILTER_SZIP@"
+USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
+USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@"
+USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@"
+USE_FILTER_NBIT="@USE_FILTER_NBIT@"
+USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@"
+
+TESTNAME=h5format_convert
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+FORMCONV=h5format_convert # The tool name
+FORMCONV_BIN=`pwd`/$FORMCONV # The path of the tool binary
+
+CHK_IDX=h5fc_chk_idx # The program name
+CHK_IDX_BIN=`pwd`/$CHK_IDX # The program to verify the chunk indexing type is v1 B-tree
+
+RM='rm -rf'
+CMP='cmp -s'
+DIFF='diff -c'
+CP='cp'
+H5DUMP=../h5dump/h5dump # The h5dump tool name
+H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary
+DIRNAME='dirname'
+LS='ls'
+AWK='awk'
+
+nerrors=0
+verbose=yes
+
+# source dirs
+SRC_TOOLS="$srcdir/.."
+SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
+
+# testfiles source dirs for tools
+SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
+SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
+SRC_H5DIFF_TESTFILES="$SRC_TOOLS/h5diff/testfiles"
+SRC_H5COPY_TESTFILES="$SRC_TOOLS/h5copy/testfiles"
+SRC_H5REPACK_TESTFILES="$SRC_TOOLS/h5repack/testfiles"
+SRC_H5JAM_TESTFILES="$SRC_TOOLS/h5jam/testfiles"
+SRC_H5STAT_TESTFILES="$SRC_TOOLS/h5stat/testfiles"
+SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/h5import/testfiles"
+SRC_H5FORMCONV_TESTFILES="$SRC_TOOLS/h5format_convert/testfiles"
+
+TESTDIR=./testfiles
+test -d $TESTDIR || mkdir $TESTDIR
+
+# Copy the testfile to a temporary file for testing as h5format_convert is changing the file in place
+TMPFILE=tmp.h5
+
+######################################################################
+# test files
+# --------------------------------------------------------------------
+# All the test files copy from source directory to test directory
+# NOTE: Keep this framework to add/remove test files.
+# Any test files from other tools can be used in this framework.
+# This list are also used for checking exist.
+# Comment '#' without space can be used.
+# --------------------------------------------------------------------
+LIST_HDF5_TEST_FILES="
+$SRC_H5FORMCONV_TESTFILES/h5fc_non_v3.h5
+$SRC_H5FORMCONV_TESTFILES/h5fc_edge_v3.h5
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext_none.h5
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext_none.h5
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext1_i.h5
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext1_s.h5
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext1_f.h5
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext2_if.h5
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext2_is.h5
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext2_sf.h5
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext3_isf.h5
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext1_i.h5
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext1_s.h5
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext1_f.h5
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext2_if.h5
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext2_is.h5
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext2_sf.h5
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext3_isf.h5
+"
+
+LIST_OTHER_TEST_FILES="
+$SRC_H5FORMCONV_TESTFILES/h5fc_help.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_nooption.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_nonexistfile.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_d_file.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_dname.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_nonexistdset_file.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_v_non_chunked.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_v_bt1.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_v_ndata_bt1.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_v_all.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_v_n_1d.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_v_n_all.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext1_i.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext1_s.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext1_f.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext2_if.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext2_is.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext2_sf.ddl
+$SRC_H5FORMCONV_TESTFILES/h5fc_ext3_isf.ddl
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext1_i.ddl
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext1_s.ddl
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext1_f.ddl
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext2_if.ddl
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext2_is.ddl
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext2_sf.ddl
+$SRC_H5FORMCONV_TESTFILES/old_h5fc_ext3_isf.ddl
+"
+
+#
+# copy test files and expected output files from source dirs to test dir
+#
+COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES"
+
+COPY_TESTFILES_TO_TESTDIR()
+{
+ # copy test files. Used -f to make sure get a new copy
+ for tstfile in $COPY_TESTFILES
+ do
+ # ignore '#' comment
+ echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
+ RET=$?
+ if [ $RET -eq 1 ]; then
+ # skip cp if srcdir is same as destdir
+ # this occurs when build/test performed in source dir and
+ # make cp fail
+ SDIR=`$DIRNAME $tstfile`
+ INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+ INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
+ if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+ $CP -f $tstfile $TESTDIR
+ if [ $? -ne 0 ]; then
+ echo "Error: FAILED to copy $tstfile ."
+
+ # Comment out this to CREATE expected file
+ exit $EXIT_FAILURE
+ fi
+ fi
+ fi
+ done
+}
+
+CLEAN_TESTFILES_AND_TESTDIR()
+{
+ # skip rm if srcdir is same as destdir
+ # this occurs when build/test performed in source dir and
+ # make cp fail
+ SDIR=`$DIRNAME $tstfile`
+ INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+ INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
+ if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+ $RM $TESTDIR
+ else
+ $RM $TESTDIR/$TMPFILE
+ fi
+}
+
+# Print a line-line message left justified in a field of 80 characters
+# beginning with the word "Testing".
+#
+TESTING() {
+ SPACES=" "
+ echo "Testing $* $SPACES" | cut -c1-80 | tr -d '\012'
+}
+
+# Run a test and print PASS or *FAIL*. If a test fails then increment
+# the `nerrors' global variable and (if $verbose is set) display the
+# difference between the actual output and the expected output. The
+# expected output is given as the first argument to this function and
+# the actual output file is calculated by replacing the `.ddl' with
+# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a
+# non-zero value.
+#
+# $1: expected output
+# $2: the test file name
+# --fname might be empty or fname does not exist
+# --fname is copied to a temporary file for testing
+# $3 to at most $6--options to the tool such as:
+# -d dname or --dname=dname
+# -v or --verbose
+# -n or --noop
+TOOLTEST_OUT() {
+ # Prepare expected and actual output
+ expect="$TESTDIR/$1"
+ actual="$TESTDIR/`basename $1 .ddl`.out"
+ actual_err="$TESTDIR/`basename $1 .ddl`.err"
+ actual_sav=${actual}-sav
+ actual_err_sav=${actual_err}-sav
+
+ # Prepare the test file
+ $RM $TESTDIR/$TMPFILE
+ TFILE=$2
+ if [ ! -z "$2" ] && [ -e $TESTDIR/$2 ] ; then
+ $CP $TESTDIR/$2 $TESTDIR/$TMPFILE
+ TFILE=$TMPFILE
+ fi
+
+ # Run test.
+ TESTING $FORMCONV $3 $4 $5 $6 $2
+ (
+ cd $TESTDIR
+ $RUNSERIAL $FORMCONV_BIN $3 $4 $5 $6 $TFILE
+ ) >$actual 2>$actual_err
+ cp $actual $actual_sav
+ cp $actual_err $actual_err_sav
+ cat $actual_err >> $actual
+
+ # Compare output
+ COMPARE_OUT $expect $actual
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ $RM $actual $actual_err
+ $RM $actual $actual_err $actual_sav $actual_err_sav
+ fi
+}
+
+# To check that the tool exits success, no output
+# Assume all short options
+# $1 is the test file name
+# --fname exists
+# --fname is copied to a temporary file for testing
+# $2 to at most $4--options to the tool such as:
+# -d dname
+# -n
+TOOLTEST() {
+ TESTING $FORMCONV $2 $3 $4 $1
+ $RM $TESTDIR/$TMPFILE
+ $CP $TESTDIR/$1 $TESTDIR/$TMPFILE
+ $RUNSERIAL $FORMCONV_BIN $2 $3 $4 $TESTDIR/$TMPFILE
+ exitcode=$?
+ if [ $exitcode -ne 0 ]; then
+ echo "*FAILED*"
+ echo " The tool exits failure"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+}
+
+CHECKING() {
+ SPACES=" "
+ echo "Verifying $* $SPACES" | cut -c1-80 | tr -d '\012'
+}
+
+# Assume $TESTDIR/$TMPFILE is the converted test file
+# $1 dataset name
+IDX_CHECK() {
+ CHECKING $1
+ $RUNSERIAL $CHK_IDX_BIN $TESTDIR/$TMPFILE $1
+ ret=$?
+ if [ $ret -eq 0 ]; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " The chunk indexing type is not correct"
+ nerrors="`expr $nerrors + 1`"
+ fi
+}
+
+# $1 is the expected output
+# $2 is the output from testing
+COMPARE_OUT() {
+ if $CMP $1 $2; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ddl) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ fi
+}
+
+# Assume $TESTDIR/$TMPFILE is the converted test file
+# $1 is the test file for verifying h5dump output
+# $2 is the expected output from h5dump
+H5DUMP_CHECK() {
+ CHECKING h5dump output for $1
+ expect="$TESTDIR/$2"
+ actual="$TESTDIR/`basename $2 .ddl`.out"
+ actual_err="$TESTDIR/`basename $2 .ddl`.err"
+ $RUNSERIAL $H5DUMP_BIN -BH $TESTDIR/$TMPFILE > $actual 2>$actual_err
+ cat $actual_err >> $actual
+
+ # Compare output
+ COMPARE_OUT $expect $actual
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ $RM $actual $actual_err
+ fi
+}
+
+# Print a "SKIP" message
+SKIP() {
+ TESTING $STAT $@
+ echo " -SKIP-"
+}
+
+
+
+##############################################################################
+##############################################################################
+### T H E T E S T S ###
+##############################################################################
+##############################################################################
+# prepare for test
+COPY_TESTFILES_TO_TESTDIR
+#
+#
+#
+# h5format_convert --help
+# h5format_convert (no options)
+# h5format_convert nonexist.h5 (no options, file does not exist)
+TOOLTEST_OUT h5fc_help.ddl '' --help
+TOOLTEST_OUT h5fc_nooption.ddl ''
+TOOLTEST_OUT h5fc_nonexistfile.ddl nonexist.h5
+#
+#
+# h5format_convert -d old_h5fc_ext_none.h5 (just -d option, file exists)
+# h5format_convert --dname old_h5fc_ext_none.h5 (just --dname option, file exists)
+# h5format_convert --dname (just --dname option)
+# h5format_convert --dname=nonexist old_h5fc_ext_none.h5 (dataset does not exist, file exists)
+TOOLTEST_OUT h5fc_d_file.ddl old_h5fc_ext_none.h5 -d
+TOOLTEST_OUT h5fc_d_file.ddl old_h5fc_ext_none.h5 --dname
+TOOLTEST_OUT h5fc_dname.ddl '' --dname
+TOOLTEST_OUT h5fc_nonexistdset_file.ddl old_h5fc_ext_none.h5 --dname=nonexist
+#
+#
+#
+# h5format_convert -d /DSET_CONTIGUOUS -v old_h5fc_ext_none.h5 (verbose, contiguous dataset)
+# h5format_convert -d /GROUP/DSET_BT2 --verbose old_h5fc_ext_none.h5 (verbose, bt1 dataset)
+# h5format_convert -d /DSET_NDATA_BT2 -v -n old_h5fc_ext_none.h5 (verbose, noop, bt1+nodata dataset)
+# h5format_convert -v old_h5fc_ext_none.h5 (verbose, all datasets)
+TOOLTEST_OUT h5fc_v_non_chunked.ddl old_h5fc_ext_none.h5 -d /DSET_CONTIGUOUS -v
+TOOLTEST_OUT h5fc_v_bt1.ddl old_h5fc_ext_none.h5 -d /GROUP/DSET_BT2 --verbose
+TOOLTEST_OUT h5fc_v_ndata_bt1.ddl old_h5fc_ext_none.h5 -d /DSET_NDATA_BT2 -v -n
+TOOLTEST_OUT h5fc_v_all.ddl old_h5fc_ext_none.h5 -v
+#
+#
+#
+# h5format_convert -d /DSET_EA -v -n h5fc_ext_none.h5 (verbose, noop, one ea dataset)
+# h5format_convert -v -n h5fc_non_v3.h5 (verbose, noop, all datasets)
+TOOLTEST_OUT h5fc_v_n_1d.ddl h5fc_ext_none.h5 -d /DSET_EA -v -n
+TOOLTEST_OUT h5fc_v_n_all.ddl h5fc_non_v3.h5 -v -n
+#
+#
+#
+# No output from tests
+# 1) Use the tool to convert the dataset
+# 2) Verify the chunk indexing type is correct
+# h5format_convert -d /DSET_EA h5fc_ext_none.h5
+# h5format_convert -d /GROUP/DSET_NDATA_EA h5fc_ext_none.h5
+# h5format_convert -d /GROUP/DSET_BT2 h5fc_ext_none.h5
+# h5format_convert -d /DSET_NDATA_BT2 h5fc_ext_none.h5
+# h5format_convert -d /DSET_FA h5fc_ext_none.h5
+# h5format_convert -d /GROUP/DSET_FA h5fc_ext_none.h5
+# h5format_convert -d /DSET_NONE h5fc_ext_none.h5
+# h5format_convert -d /GROUP/DSET_NDATA_NONE h5fc_ext_none.h5
+TOOLTEST h5fc_ext_none.h5 -d /DSET_EA
+IDX_CHECK /DSET_EA
+#
+TOOLTEST h5fc_ext_none.h5 -d /GROUP/DSET_NDATA_EA
+IDX_CHECK /GROUP/DSET_NDATA_EA
+#
+TOOLTEST h5fc_ext_none.h5 -d /GROUP/DSET_BT2
+IDX_CHECK /GROUP/DSET_BT2
+#
+TOOLTEST h5fc_ext_none.h5 -d /DSET_NDATA_BT2
+IDX_CHECK /DSET_NDATA_BT2
+#
+TOOLTEST h5fc_ext_none.h5 -d /DSET_FA
+IDX_CHECK /DSET_FA
+#
+TOOLTEST h5fc_ext_none.h5 -d /GROUP/DSET_NDATA_FA
+IDX_CHECK /GROUP/DSET_NDATA_FA
+#
+TOOLTEST h5fc_ext_none.h5 -d /DSET_NONE
+IDX_CHECK /DSET_NONE
+#
+TOOLTEST h5fc_ext_none.h5 -d /GROUP/DSET_NDATA_NONE
+IDX_CHECK /GROUP/DSET_NDATA_NONE
+#
+#
+#
+# No output from tests: just check exit code
+# h5format_convert -d /DSET_NDATA_BT2 old_h5fc_ext_none.h5 (v1-btree dataset)
+# h5format_convert -d /DSET_CONTIGUOUS h5fc_non_v3.h5 (non-chunked dataset)
+TOOLTEST old_h5fc_ext_none.h5 -d /DSET_NDATA_BT2
+TOOLTEST h5fc_non_v3.h5 -d /DSET_CONTIGUOUS
+#
+#
+#
+# No output from tests: just check exit code
+# h5format_convert -d /GROUP/DSET_BT2 -n h5fc_non_v3.h5 (noop, one dataset)
+# h5format_convert -n h5fc_non_v3.h5 (noop, all datasets)
+TOOLTEST h5fc_non_v3.h5 -d /GROUP/DSET_BT2 -n
+TOOLTEST h5fc_non_v3.h5 -n
+#
+#
+#
+# No output from tests: just check exit code
+# h5format_convert h5fc_non_v3.h5
+# 1) convert all datasets
+# 2) verify indexing types
+TOOLTEST h5fc_non_v3.h5
+IDX_CHECK /DSET_NDATA_EA
+IDX_CHECK /DSET_NDATA_BT2
+IDX_CHECK /GROUP/DSET_BT2
+IDX_CHECK /GROUP/DSET_EA
+#
+#
+#
+# No output from test: just check exit code
+# h5format_convert h5fc_edge_v3.h5
+# 1) convert the chunked dataset (filter, no-filter-edge-chunk)
+# 2) verify the indexing type
+TOOLTEST h5fc_edge_v3.h5
+IDX_CHECK /DSET_EDGE
+#
+#
+
+# The following test files have messages in the superblock extension.
+# Verify h5dump output for correctness after conversion
+TOOLTEST h5fc_ext1_i.h5
+H5DUMP_CHECK h5fc_ext1_i.h5 h5fc_ext1_i.ddl
+TOOLTEST h5fc_ext1_s.h5
+H5DUMP_CHECK h5fc_ext1_s.h5 h5fc_ext1_s.ddl
+TOOLTEST h5fc_ext1_f.h5
+H5DUMP_CHECK h5fc_ext1_f.h5 h5fc_ext1_f.ddl
+#
+TOOLTEST h5fc_ext2_if.h5
+H5DUMP_CHECK h5fc_ext2_if.h5 h5fc_ext2_if.ddl
+TOOLTEST h5fc_ext2_is.h5
+H5DUMP_CHECK h5fc_ext2_is.h5 h5fc_ext2_is.ddl
+TOOLTEST h5fc_ext2_sf.h5
+H5DUMP_CHECK h5fc_ext2_sf.h5 h5fc_ext2_sf.ddl
+#
+TOOLTEST h5fc_ext3_isf.h5
+H5DUMP_CHECK h5fc_ext3_isf.h5 h5fc_ext3_isf.ddl
+#
+#
+#
+TOOLTEST old_h5fc_ext1_i.h5
+H5DUMP_CHECK old_h5fc_ext1_i.h5 old_h5fc_ext1_i.ddl
+TOOLTEST old_h5fc_ext1_s.h5
+H5DUMP_CHECK old_h5fc_ext1_s.h5 old_h5fc_ext1_s.ddl
+TOOLTEST old_h5fc_ext1_f.h5
+H5DUMP_CHECK old_h5fc_ext1_f.h5 old_h5fc_ext1_f.ddl
+#
+TOOLTEST old_h5fc_ext2_if.h5
+H5DUMP_CHECK old_h5fc_ext2_if.h5 old_h5fc_ext2_if.ddl
+TOOLTEST old_h5fc_ext2_is.h5
+H5DUMP_CHECK old_h5fc_ext2_is.h5 old_h5fc_ext2_is.ddl
+TOOLTEST old_h5fc_ext2_sf.h5
+H5DUMP_CHECK old_h5fc_ext2_sf.h5 old_h5fc_ext2_sf.ddl
+#
+TOOLTEST old_h5fc_ext3_isf.h5
+H5DUMP_CHECK old_h5fc_ext3_isf.h5 old_h5fc_ext3_isf.ddl
+#
+# Clean up temporary files/directories
+CLEAN_TESTFILES_AND_TESTDIR
+
+if test $nerrors -eq 0 ; then
+ echo "All $TESTNAME tests passed."
+ exit $EXIT_SUCCESS
+else
+ echo "$TESTNAME tests failed with $nerrors errors."
+ exit $EXIT_FAILURE
+fi
+