Replace H5E_ATOM major error category with H5E_ID (#121)

* Renames H5I_ATOM to H5I_ID, among other related changes

* Java has been updated.
* Fortran is failing on my VM, even though I don't touch that.

* Adds a RELEASE.txt note for H5E_ATOM to H5E_ID changes

* Fixes typos in comments

9 files changed, 26 insertions, 26 deletions

diff --git a/tools/test/h5dump/errfiles/tall-1.err b/tools/test/h5dump/errfiles/tall-1.err
index 84140f2..2269c97 100644
--- a/tools/test/h5dump/errfiles/tall-1.err
+++ b/tools/test/h5dump/errfiles/tall-1.err
@@ -28,7 +28,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #009: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #010: (file name) line (number) in H5L__extern_traverse(): unable to open external file, external link file name = 'somefile'
     major: Links
     minor: Unable to open file
diff --git a/tools/test/h5dump/errfiles/tall-2A.err b/tools/test/h5dump/errfiles/tall-2A.err
index 84140f2..2269c97 100644
--- a/tools/test/h5dump/errfiles/tall-2A.err
+++ b/tools/test/h5dump/errfiles/tall-2A.err
@@ -28,7 +28,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #009: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #010: (file name) line (number) in H5L__extern_traverse(): unable to open external file, external link file name = 'somefile'
     major: Links
     minor: Unable to open file
diff --git a/tools/test/h5dump/errfiles/tall-2A0.err b/tools/test/h5dump/errfiles/tall-2A0.err
index 84140f2..2269c97 100644
--- a/tools/test/h5dump/errfiles/tall-2A0.err
+++ b/tools/test/h5dump/errfiles/tall-2A0.err
@@ -28,7 +28,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #009: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #010: (file name) line (number) in H5L__extern_traverse(): unable to open external file, external link file name = 'somefile'
     major: Links
     minor: Unable to open file
diff --git a/tools/test/h5dump/errfiles/tall-2B.err b/tools/test/h5dump/errfiles/tall-2B.err
index 84140f2..2269c97 100644
--- a/tools/test/h5dump/errfiles/tall-2B.err
+++ b/tools/test/h5dump/errfiles/tall-2B.err
@@ -28,7 +28,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #009: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #010: (file name) line (number) in H5L__extern_traverse(): unable to open external file, external link file name = 'somefile'
     major: Links
     minor: Unable to open file
diff --git a/tools/test/h5dump/errfiles/textlink.err b/tools/test/h5dump/errfiles/textlink.err
index 3f77f38..5ca94a8 100644
--- a/tools/test/h5dump/errfiles/textlink.err
+++ b/tools/test/h5dump/errfiles/textlink.err
@@ -28,7 +28,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #009: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #010: (file name) line (number) in H5L__extern_traverse(): unable to open external file, external link file name = 'filename'
     major: Links
     minor: Unable to open file
@@ -62,7 +62,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #009: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #010: (file name) line (number) in H5L__extern_traverse(): unable to open external file, external link file name = 'anotherfile'
     major: Links
     minor: Unable to open file
diff --git a/tools/test/h5dump/errfiles/textlinkfar.err b/tools/test/h5dump/errfiles/textlinkfar.err
index 8245291..92bad14 100644
--- a/tools/test/h5dump/errfiles/textlinkfar.err
+++ b/tools/test/h5dump/errfiles/textlinkfar.err
@@ -28,7 +28,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #009: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #010: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -71,7 +71,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #004: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #005: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -92,7 +92,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #011: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #012: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -113,7 +113,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #018: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #019: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -134,7 +134,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #025: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #026: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -168,7 +168,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #004: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #005: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -189,7 +189,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #011: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #012: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -210,7 +210,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #018: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #019: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -231,7 +231,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #025: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #026: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
diff --git a/tools/test/h5dump/errfiles/textlinksrc.err b/tools/test/h5dump/errfiles/textlinksrc.err
index 8245291..92bad14 100644
--- a/tools/test/h5dump/errfiles/textlinksrc.err
+++ b/tools/test/h5dump/errfiles/textlinksrc.err
@@ -28,7 +28,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #009: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #010: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -71,7 +71,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #004: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #005: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -92,7 +92,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #011: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #012: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -113,7 +113,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #018: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #019: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -134,7 +134,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #025: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #026: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -168,7 +168,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #004: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #005: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -189,7 +189,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #011: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #012: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -210,7 +210,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #018: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #019: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
@@ -231,7 +231,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #025: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #026: (file name) line (number) in H5L__extern_traverse(): unable to open object
     major: Links
     minor: Can't open object
diff --git a/tools/test/h5dump/errfiles/torderlinks1.err b/tools/test/h5dump/errfiles/torderlinks1.err
index caeef27..1fbd47e 100644
--- a/tools/test/h5dump/errfiles/torderlinks1.err
+++ b/tools/test/h5dump/errfiles/torderlinks1.err
@@ -28,7 +28,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #009: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #010: (file name) line (number) in H5L__extern_traverse(): unable to open external file, external link file name = 'fname'
     major: Links
     minor: Unable to open file
diff --git a/tools/test/h5dump/errfiles/torderlinks2.err b/tools/test/h5dump/errfiles/torderlinks2.err
index caeef27..1fbd47e 100644
--- a/tools/test/h5dump/errfiles/torderlinks2.err
+++ b/tools/test/h5dump/errfiles/torderlinks2.err
@@ -28,7 +28,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Link traversal failure
   #009: (file name) line (number) in H5G__traverse_ud(): traversal callback returned invalid ID
     major: Symbol table
-    minor: Unable to find atom information (already closed?)
+    minor: Unable to find ID information (already closed?)
   #010: (file name) line (number) in H5L__extern_traverse(): unable to open external file, external link file name = 'fname'
     major: Links
     minor: Unable to open file