[svn-r9902] Purpose:

Configuration feature

Description:
HDF5 now uses automake to generate Makefiles

Solution:
Makefile.in files are now generated from Makefile.am files.
To reconfigure (after chaning a Makefile.am or configure.in):
/bin/sh bin/reconfigure.sh

Platforms tested:
Many

30 files changed, 7652 insertions, 3002 deletions

diff --git a/tools/Dependencies b/tools/Dependencies
deleted file mode 100644
index e69de29..0000000
--- a/tools/Dependencies
+++ /dev/null
diff --git a/tools/Makefile.am b/tools/Makefile.am
new file mode 100644
index 0000000..bbd0dbd
--- /dev/null
+++ b/tools/Makefile.am
@@ -0,0 +1,48 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+##
+#
+# Tools HDF5 Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# All subdirectories
+SUBDIRS=lib h5dump h5diff h5ls misc gifconv h5import h5repack h5jam
+
+
+##lib:
+##	(cd lib && $(MAKE) $@) || exit 1;
+
+##progs tests: $(LIBTOOLS) $(LIBHDF5)
+##	@@SETX@; for d in X $(SUBDIRS); do                                    \
+##	  if test $$d != X; then                                              \
+##	    (cd $$d && $(MAKE) $@) || exit 1;                                 \
+##	  fi;                                                                 \
+##	done
+
+##tests: $(LIBTOOLS) $(LIBHDF5)
+##	@@SETX@; for d in X $(SUBDIRS); do                                \
+##	  if test $$d != X; then                                              \
+##	    (cd $$d && $(MAKE) $@) || exit 1;                                 \
+##	  fi;                                                                 \
+##	done
+
+# Makefile needs to recognize these targets
+#test _test: check
+#check-install:
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/Makefile.in b/tools/Makefile.in
index 27b503c..45edd6c 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -1,117 +1,673 @@
-##
-## Copyright by the Board of Trustees of the University of Illinois.
-## All rights reserved.
-##
-## This file is part of HDF5.  The full HDF5 copyright notice, including
-## terms governing use, modification, and redistribution, is contained in
-## the files COPYING and Copyright.html.  COPYING can be found at the root
-## of the source code distribution tree; Copyright.html can be found at the
-## root level of an installed copy of the electronic HDF5 document set and
-## is linked from the top-level documents page.  It can also be found at
-## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
-## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
-##
-## Tools HDF5 Makefile(.in)
-##
-top_srcdir=@top_srcdir@
-top_builddir=..
-srcdir=@srcdir@
-@COMMENCE@
-
-## All subdirectories except for the ``lib'' subdirectory.
-##
-SUBDIRS=h5dump h5diff h5ls misc gifconv h5import h5repack h5jam
-
-## Add include directory to the C preprocessor flags, add -lh5tools and
-## -lhdf5 to the list of libraries.
-##
-CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src  \
-         -I$(top_srcdir)/tools/lib @CPPFLAGS@
-
-## Test programs and scripts.
-##
-TEST_PROGS=
-TEST_SCRIPTS=
-
-## These are our main targets: library and tools.
-##
-LIBTOOLS=$(top_builddir)/tools/lib/libh5tools.la
-LIBHDF5=$(top_builddir)/src/libhdf5.la
-
-PROGS=$(PUB_PROGS) $(TEST_PROGS)
-
-## Source and object files for the tests
-##
-TEST_SRC=
-TEST_OBJ=$(TEST_SRC:.c=.lo)
-
-lib ::
-	(cd lib && $(MAKE) $@) || exit 1;
-
-progs: $(LIBTOOLS) $(LIBHDF5)
-	@@SETX@; for d in X $(SUBDIRS); do                                    \
-	  if test $$d != X; then                                              \
-	    (cd $$d && $(MAKE) $@) || exit 1;                                 \
-	  fi;                                                                 \
-	done
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
 
-dep depend:
-	@@SETX@; for d in X lib $(SUBDIRS); do                                \
-	  if test $$d != X; then                                              \
-	    (cd $$d && $(MAKE) $@) || exit 1;                                 \
-	  fi;                                                                 \
-	done
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
 
-check tests test _test: $(PROGS)
-	@@SETX@; for d in X lib $(SUBDIRS); do                                \
-	  if test $$d != X; then                                              \
-	    (cd $$d && $(MAKE) $@) || exit 1;                                 \
-	  fi;                                                                 \
-	done
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
 
-uninstall:
-	@@SETX@; for d in X lib $(SUBDIRS); do                                \
-	  if test $$d != X; then                                              \
-	    (cd $$d && $(MAKE) $@) || exit 1;                                 \
-	  fi;                                                                 \
-	done
+@SET_MAKE@
 
-install:
-	@@SETX@; for d in X lib $(SUBDIRS); do                                \
-	  if test $$d != X; then                                              \
-	    (cd $$d && $(MAKE) $@) || exit 1;                                 \
-	  fi;                                                                 \
-	done
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# Tools HDF5 Makefile(.in)
+#
 
-install-doc:
-	@@SETX@; for d in X lib $(SUBDIRS); do                                \
-	  if test $$d != X; then                                              \
-	    (cd $$d && $(MAKE) $@);                                           \
-	  fi;                                                                 \
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/conclude' file which was generated with config.status
+# from `./config/conclude.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_DATA = @INSTALL_DATA@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+F77 = @F77@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+# All subdirectories
+SUBDIRS = lib h5dump h5diff h5ls misc gifconv h5import h5repack h5jam
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
+# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and
+# EXTRA_TEST variables are supplied to allow the user to force targets to
+# be built at certain times. 
+LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
+      $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
+        $(EXTRA_PROG)
+
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+subdir = tools
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES =
+DIST_SOURCES =
+
+RECURSIVE_TARGETS = info-recursive dvi-recursive install-info-recursive \
+	uninstall-info-recursive all-recursive install-data-recursive \
+	install-exec-recursive installdirs-recursive install-recursive \
+	uninstall-recursive check-recursive installcheck-recursive
+DIST_COMMON = Makefile.am Makefile.in
+DIST_SUBDIRS = $(SUBDIRS)
+all: all-recursive
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  tools/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+
+# This directory's subdirectories are mostly independent; you can cd
+# into them and run `make' without going through this Makefile.
+# To change the values of `make' variables: instead of editing Makefiles,
+# (1) if the variable is set in `config.status', edit `config.status'
+#     (which will cause the Makefiles to be regenerated when you run `make');
+# (2) otherwise, pass the desired values on the `make' command line.
+$(RECURSIVE_TARGETS):
+	@set fnord $$MAKEFLAGS; amf=$$2; \
+	dot_seen=no; \
+	target=`echo $@ | sed s/-recursive//`; \
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  echo "Making $$target in $$subdir"; \
+	  if test "$$subdir" = "."; then \
+	    dot_seen=yes; \
+	    local_target="$$target-am"; \
+	  else \
+	    local_target="$$target"; \
+	  fi; \
+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+	   || case "$$amf" in *=*) exit 1;; *k*) fail=yes;; *) exit 1;; esac; \
+	done; \
+	if test "$$dot_seen" = "no"; then \
+	  $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
+	fi; test -z "$$fail"
+
+mostlyclean-recursive clean-recursive distclean-recursive \
+maintainer-clean-recursive:
+	@set fnord $$MAKEFLAGS; amf=$$2; \
+	dot_seen=no; \
+	case "$@" in \
+	  distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
+	  *) list='$(SUBDIRS)' ;; \
+	esac; \
+	rev=''; for subdir in $$list; do \
+	  if test "$$subdir" = "."; then :; else \
+	    rev="$$subdir $$rev"; \
+	  fi; \
+	done; \
+	rev="$$rev ."; \
+	target=`echo $@ | sed s/-recursive//`; \
+	for subdir in $$rev; do \
+	  echo "Making $$target in $$subdir"; \
+	  if test "$$subdir" = "."; then \
+	    local_target="$$target-am"; \
+	  else \
+	    local_target="$$target"; \
+	  fi; \
+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+	   || case "$$amf" in *=*) exit 1;; *k*) fail=yes;; *) exit 1;; esac; \
+	done && test -z "$$fail"
+tags-recursive:
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
 	done
 
-.PHONY: all lib progs test _test install uninstall clean           \
-	mostlyclean distclean maintainer-clean
+ETAGS = etags
+ETAGSFLAGS =
 
-clean mostlyclean:
-	@@SETX@; for d in X lib $(SUBDIRS); do                                \
-	  if test $$d != X; then                                              \
-	    (cd $$d && $(MAKE) $@);                                           \
-	  fi;                                                                 \
+tags: TAGS
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+
+TAGS: tags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test -f $$subdir/TAGS && tags="$$tags -i $$here/$$subdir/TAGS"; \
+	  fi; \
+	done; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(ETAGS_ARGS)$$tags$$unique" \
+	  || $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test -d $(distdir)/$$subdir \
+	    || mkdir $(distdir)/$$subdir \
+	    || exit 1; \
+	    (cd $$subdir && \
+	      $(MAKE) $(AM_MAKEFLAGS) \
+	        top_distdir="$(top_distdir)" \
+	        distdir=../$(distdir)/$$subdir \
+	        distdir) \
+	      || exit 1; \
+	  fi; \
 	done
+check-am: all-am
+	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
+check: check-recursive
+all-am: Makefile all-local
+installdirs: installdirs-recursive
+installdirs-am:
 
-distclean:
-	@@SETX@; for d in X lib $(SUBDIRS); do                                \
-	  if test $$d != X; then                                              \
-	    (cd $$d && $(MAKE) $@);                                           \
-	  fi;                                                                 \
+install: install-recursive
+install-exec: install-exec-recursive
+install-data: install-data-recursive
+uninstall: uninstall-recursive
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-recursive
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-recursive
+
+clean-am: clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-recursive
+
+distclean-am: clean-am distclean-generic distclean-libtool \
+	distclean-tags
+
+dvi: dvi-recursive
+
+dvi-am:
+
+info: info-recursive
+
+info-am:
+
+install-data-am:
+
+install-exec-am:
+
+install-info: install-info-recursive
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-recursive
+
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-recursive
+
+mostlyclean-am: mostlyclean-generic mostlyclean-libtool
+
+uninstall-am: uninstall-info-am
+
+uninstall-info: uninstall-info-recursive
+
+.PHONY: $(RECURSIVE_TARGETS) GTAGS all all-am all-local check \
+	check-TESTS check-am clean clean-generic clean-libtool \
+	clean-recursive distclean distclean-generic distclean-libtool \
+	distclean-recursive distclean-tags distdir dvi dvi-am \
+	dvi-recursive info info-am info-recursive install install-am \
+	install-data install-data-am install-data-recursive \
+	install-exec install-exec-am install-exec-recursive \
+	install-info install-info-am install-info-recursive install-man \
+	install-recursive install-strip installcheck installcheck-am \
+	installdirs installdirs-am installdirs-recursive \
+	maintainer-clean maintainer-clean-generic \
+	maintainer-clean-recursive mostlyclean mostlyclean-generic \
+	mostlyclean-libtool mostlyclean-recursive tags tags-recursive \
+	uninstall uninstall-am uninstall-info-am \
+	uninstall-info-recursive uninstall-recursive
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+lib progs tests ::
+	@$(MAKE) build-$@ || exit 1;                                          \
+	for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X -a $$d != .; then                                \
+	        (set -x; cd $$d && $(MAKE) $@) || exit 1;                     \
+	    fi;                                                               \
 	done
-	-$(RM) Makefile
 
-maintainer-clean:
-	@@SETX@; for d in X lib $(SUBDIRS); do                                \
-	  if test $$d != X; then                                              \
-	    (cd $$d && $(MAKE) $@);                                           \
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test: $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	   echo "===Tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+        fi
+	@for test in $(TEST_PROG) dummy; do                                  \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNTEST) ./$$test $(TEST_FLAGS) ||                         \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNPARALLEL) ./$$test $(TEST_FLAGS) ||                     \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@for test in $(TEST_SCRIPT) dummy; do                                \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	         srcdir="$(srcdir)"                                           \
+	         /bin/sh $$test $(TEST_FLAGS) ||                              \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
 	  fi;                                                                 \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	    echo "===Tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) check;                              \
+	    fi;                                                               \
 	done
 
+# Makefile needs to recognize these targets
+#test _test: check
+#check-install:
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/gifconv/Dependencies b/tools/gifconv/Dependencies
deleted file mode 100644
index af2a84b..0000000
--- a/tools/gifconv/Dependencies
+++ /dev/null
@@ -1,323 +0,0 @@
-## This file is machine generated on GNU systems.
-## Only temporary changes may be made here.
-
-decompress.lo: \
-   $(top_srcdir)/tools/gifconv/decompress.c \
-   $(top_srcdir)/tools/gifconv/gif.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h
-gif2hdf.lo: \
-   $(top_srcdir)/tools/gifconv/gif2hdf.c \
-   $(top_srcdir)/tools/gifconv/gif.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h
-gif2mem.lo: \
-   $(top_srcdir)/tools/gifconv/gif2mem.c \
-   $(top_srcdir)/tools/gifconv/gif.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h
-gifread.lo: \
-   $(top_srcdir)/tools/gifconv/gifread.c \
-   $(top_srcdir)/tools/gifconv/gif.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
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-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h
-hdf2gif.lo: \
-   $(top_srcdir)/tools/gifconv/hdf2gif.c \
-   $(top_srcdir)/tools/gifconv/gif.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
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-   $(top_srcdir)/src/H5HLpublic.h \
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-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h
-hdfgifwr.lo: \
-   $(top_srcdir)/tools/gifconv/hdfgifwr.c \
-   $(top_srcdir)/tools/gifconv/gif.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
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-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
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-   $(top_srcdir)/src/H5MMpublic.h \
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-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h
-readhdf.lo: \
-   $(top_srcdir)/tools/gifconv/readhdf.c \
-   $(top_srcdir)/tools/gifconv/gif.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h
-writehdf.lo: \
-   $(top_srcdir)/tools/gifconv/writehdf.c \
-   $(top_srcdir)/tools/gifconv/gif.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h
diff --git a/tools/gifconv/Makefile.am b/tools/gifconv/Makefile.am
new file mode 100644
index 0000000..2ce6690
--- /dev/null
+++ b/tools/gifconv/Makefile.am
@@ -0,0 +1,34 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src and tools/lib directories
+AM_CFLAGS=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# These are our main targets, the tools
+bin_PROGRAMS=gif2h5 h52gif
+
+gif2h5_SOURCES=gif2hdf.c gif2mem.c decompress.c gifread.c writehdf.c
+h52gif_SOURCES=hdf2gif.c hdfgifwr.c readhdf.c
+
+# Programs all depend on the hdf5 library and the tools library
+LDADD=$(LIBHDF5) $(LIBH5TOOLS)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/gifconv/Makefile.in b/tools/gifconv/Makefile.in
index 79c3552..9ac7700 100644
--- a/tools/gifconv/Makefile.in
+++ b/tools/gifconv/Makefile.in
@@ -1,73 +1,706 @@
-##
-## Copyright by the Board of Trustees of the University of Illinois.
-## All rights reserved.
-##
-## This file is part of HDF5.  The full HDF5 copyright notice, including
-## terms governing use, modification, and redistribution, is contained in
-## the files COPYING and Copyright.html.  COPYING can be found at the root
-## of the source code distribution tree; Copyright.html can be found at the
-## root level of an installed copy of the electronic HDF5 document set and
-## is linked from the top-level documents page.  It can also be found at
-## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
-## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
-##
-## HDF5 Library Makefile(.in)
-##
-top_srcdir=@top_srcdir@
-top_builddir=../..
-srcdir=@srcdir@
-@COMMENCE@
-
-## Add include directory to the C preprocessor flags, add -lh5tools and
-## -lhdf5 to the list of libraries.
-##
-CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src  \
-         -I$(top_srcdir)/tools/lib @CPPFLAGS@
-
-## Test programs and scripts.
-##
-TEST_PROGS=
-TEST_SCRIPTS=
-
-## These are our main targets: library and tools.
-##
-LIBTOOLS=../lib/libh5tools.la
-LIBHDF5=$(top_builddir)/src/libhdf5.la
-
-PUB_PROGS= gif2h5 h52gif
-PROGS=$(PUB_PROGS) $(TEST_PROGS)
-
-## Source and object files for the library; do not install
-##
-LIB_SRC=
-LIB_OBJ=$(LIB_SRC:.c=.lo)
-PUB_LIB=
-
-## Source and object files for programs...
-##
-PROG_SRC=decompress.c gif2hdf.c gif2mem.c gifread.c hdf2gif.c hdfgifwr.c readhdf.c writehdf.c
-PROG_OBJ=$(PROG_SRC:.c=.lo)
-
-PRIVATE_HDR=gif.h
-
-## Source and object files for the tests
-##
-TEST_SRC=
-TEST_OBJ=$(TEST_SRC:.c=.lo)
-
-## Programs have to be built before they can be tested!
-##
-check test _test: $(PROGS)
-
-## How to build the programs...They all depend on the hdf5 library and
-## the tools library compiled in this directory.
-##
-$(PROGS): $(LIBTOOLS) $(LIBHDF5)
-
-gif2h5: gif2hdf.lo gif2mem.lo decompress.lo gifread.lo writehdf.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ gif2hdf.lo gif2mem.lo decompress.lo gifread.lo writehdf.lo  $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-h52gif: hdf2gif.lo hdfgifwr.lo readhdf.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ hdf2gif.lo hdfgifwr.lo readhdf.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-@CONCLUDE@
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
+
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# HDF5 Library Makefile(.in)
+#
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/conclude' file which was generated with config.status
+# from `./config/conclude.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
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+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
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+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
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+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
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+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
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+ECHO = @ECHO@
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+FC = @FC@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
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+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
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+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+# Include src and tools/lib directories
+AM_CFLAGS = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# These are our main targets, the tools
+bin_PROGRAMS = gif2h5 h52gif
+
+gif2h5_SOURCES = gif2hdf.c gif2mem.c decompress.c gifread.c writehdf.c
+h52gif_SOURCES = hdf2gif.c hdfgifwr.c readhdf.c
+
+# Programs all depend on the hdf5 library and the tools library
+LDADD = $(LIBHDF5) $(LIBH5TOOLS)
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
+# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and
+# EXTRA_TEST variables are supplied to allow the user to force targets to
+# be built at certain times. 
+LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
+      $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
+        $(EXTRA_PROG)
+
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+subdir = tools/gifconv
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES =
+bin_PROGRAMS = gif2h5$(EXEEXT) h52gif$(EXEEXT)
+PROGRAMS = $(bin_PROGRAMS)
+
+am_gif2h5_OBJECTS = gif2hdf.$(OBJEXT) gif2mem.$(OBJEXT) \
+	decompress.$(OBJEXT) gifread.$(OBJEXT) writehdf.$(OBJEXT)
+gif2h5_OBJECTS = $(am_gif2h5_OBJECTS)
+gif2h5_LDADD = $(LDADD)
+gif2h5_DEPENDENCIES = $(top_builddir)/src/libhdf5.la \
+	$(top_builddir)/tools/lib/libh5tools.la
+gif2h5_LDFLAGS =
+am_h52gif_OBJECTS = hdf2gif.$(OBJEXT) hdfgifwr.$(OBJEXT) \
+	readhdf.$(OBJEXT)
+h52gif_OBJECTS = $(am_h52gif_OBJECTS)
+h52gif_LDADD = $(LDADD)
+h52gif_DEPENDENCIES = $(top_builddir)/src/libhdf5.la \
+	$(top_builddir)/tools/lib/libh5tools.la
+h52gif_LDFLAGS =
+
+DEFS = @DEFS@
+DEFAULT_INCLUDES =  -I. -I$(srcdir) -I$(top_builddir)/src
+LDFLAGS = @LDFLAGS@
+LIBS = @LIBS@
+depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
+am__depfiles_maybe = depfiles
+@AMDEP_TRUE@DEP_FILES = ./$(DEPDIR)/decompress.Po ./$(DEPDIR)/gif2hdf.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/gif2mem.Po ./$(DEPDIR)/gifread.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/hdf2gif.Po ./$(DEPDIR)/hdfgifwr.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/readhdf.Po ./$(DEPDIR)/writehdf.Po
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+CFLAGS = @CFLAGS@
+DIST_SOURCES = $(gif2h5_SOURCES) $(h52gif_SOURCES)
+DIST_COMMON = Makefile.am Makefile.in
+SOURCES = $(gif2h5_SOURCES) $(h52gif_SOURCES)
+
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .o .obj
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  tools/gifconv/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+install-binPROGRAMS: $(bin_PROGRAMS)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  if test -f $$p \
+	     || test -f $$p1 \
+	  ; then \
+	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f"; \
+	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f; \
+	  else :; fi; \
+	done
+
+uninstall-binPROGRAMS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+	  echo " rm -f $(DESTDIR)$(bindir)/$$f"; \
+	  rm -f $(DESTDIR)$(bindir)/$$f; \
+	done
+
+clean-binPROGRAMS:
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+gif2h5$(EXEEXT): $(gif2h5_OBJECTS) $(gif2h5_DEPENDENCIES) 
+	@rm -f gif2h5$(EXEEXT)
+	$(LINK) $(gif2h5_LDFLAGS) $(gif2h5_OBJECTS) $(gif2h5_LDADD) $(LIBS)
+h52gif$(EXEEXT): $(h52gif_OBJECTS) $(h52gif_DEPENDENCIES) 
+	@rm -f h52gif$(EXEEXT)
+	$(LINK) $(h52gif_LDFLAGS) $(h52gif_OBJECTS) $(h52gif_LDADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT) core *.core
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/decompress.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/gif2hdf.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/gif2mem.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/gifread.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hdf2gif.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hdfgifwr.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/readhdf.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/writehdf.Po@am__quote@
+
+distclean-depend:
+	-rm -rf ./$(DEPDIR)
+
+.c.o:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `test -f '$<' || echo '$(srcdir)/'`$<
+
+.c.obj:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `cygpath -w $<`
+
+.c.lo:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Plo' tmpdepfile='$(DEPDIR)/$*.TPlo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(LTCOMPILE) -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<
+CCDEPMODE = @CCDEPMODE@
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+
+ETAGS = etags
+ETAGSFLAGS =
+
+tags: TAGS
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(ETAGS_ARGS)$$tags$$unique" \
+	  || $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ../..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
+check: check-am
+all-am: Makefile $(PROGRAMS) all-local
+
+installdirs:
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-am
+
+distclean-am: clean-am distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-exec-am: install-binPROGRAMS
+
+install-info: install-info-am
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+uninstall-am: uninstall-binPROGRAMS uninstall-info-am
+
+.PHONY: GTAGS all all-am all-local check check-TESTS check-am clean \
+	clean-binPROGRAMS clean-generic clean-libtool distclean \
+	distclean-compile distclean-depend distclean-generic \
+	distclean-libtool distclean-tags distdir dvi dvi-am info \
+	info-am install install-am install-binPROGRAMS install-data \
+	install-data-am install-exec install-exec-am install-info \
+	install-info-am install-man install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-compile \
+	mostlyclean-generic mostlyclean-libtool tags uninstall \
+	uninstall-am uninstall-binPROGRAMS uninstall-info-am
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+lib progs tests ::
+	@$(MAKE) build-$@ || exit 1;                                          \
+	for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X -a $$d != .; then                                \
+	        (set -x; cd $$d && $(MAKE) $@) || exit 1;                     \
+	    fi;                                                               \
+	done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test: $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	   echo "===Tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+        fi
+	@for test in $(TEST_PROG) dummy; do                                  \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNTEST) ./$$test $(TEST_FLAGS) ||                         \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNPARALLEL) ./$$test $(TEST_FLAGS) ||                     \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@for test in $(TEST_SCRIPT) dummy; do                                \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	         srcdir="$(srcdir)"                                           \
+	         /bin/sh $$test $(TEST_FLAGS) ||                              \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	  fi;                                                                 \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	    echo "===Tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) check;                              \
+	    fi;                                                               \
+	done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5diff/Dependencies b/tools/h5diff/Dependencies
deleted file mode 100644
index bf8ded9..0000000
--- a/tools/h5diff/Dependencies
+++ /dev/null
@@ -1,259 +0,0 @@
-## This file is machine generated on GNU systems.
-## Only temporary changes may be made here.
-
-h5diff_main.lo: \
-   $(top_srcdir)/tools/h5diff/h5diff_main.c \
-   $(top_srcdir)/tools/lib/h5diff.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/tools/lib/h5trav.h
-testh5diff_attr.lo: \
-   $(top_srcdir)/tools/h5diff/testh5diff_attr.c \
-   $(top_srcdir)/tools/h5diff/testh5diff.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h
-testh5diff_basic.lo: \
-   $(top_srcdir)/tools/h5diff/testh5diff_basic.c \
-   $(top_srcdir)/tools/h5diff/testh5diff.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h
-testh5diff_dset.lo: \
-   $(top_srcdir)/tools/h5diff/testh5diff_dset.c \
-   $(top_srcdir)/tools/h5diff/testh5diff.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h
-testh5diff_util.lo: \
-   $(top_srcdir)/tools/h5diff/testh5diff_util.c \
-   $(top_srcdir)/tools/h5diff/testh5diff.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h
-testh5diff_main.lo: \
-   $(top_srcdir)/tools/h5diff/testh5diff_main.c \
-   $(top_srcdir)/tools/h5diff/testh5diff.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h
diff --git a/tools/h5diff/Makefile.am b/tools/h5diff/Makefile.am
new file mode 100644
index 0000000..ea4fa49
--- /dev/null
+++ b/tools/h5diff/Makefile.am
@@ -0,0 +1,48 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src and tools/lib directories
+AM_CFLAGS=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Our main target, h5diff
+bin_PROGRAMS=h5diff
+
+# Test programs and scripts
+TEST_PROG=h5difftst
+TEST_SCRIPT=$(srcdir)/testh5diff.sh
+
+check_PROGRAMS=$(TEST_PROG)
+check_SCRIPTS=$(TEST_SCRIPT)
+
+# Source files for the program
+h5diff_SOURCES=h5diff_main.c
+h5difftst_SOURCES=testh5diff_main.c testh5diff_attr.c    \
+    testh5diff_basic.c testh5diff_dset.c testh5diff_util.c
+
+# Programs depend on the main HDF5 library and tools library
+LDADD=$(LIBH5TOOLS) $(LIBHDF5) 
+
+# Temporary files.  *.h5 are generated by h5diff.  They should
+# be copied to the testfiles/ directory if update is required
+MOSTLYCLEANFILES=*.h5
+
+include $(top_srcdir)/config/conclude.am
+
diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in
index a616658..11dbe3b 100644
--- a/tools/h5diff/Makefile.in
+++ b/tools/h5diff/Makefile.in
@@ -1,80 +1,731 @@
-##
-## Copyright by the Board of Trustees of the University of Illinois.
-## All rights reserved.
-##
-## This file is part of HDF5.  The full HDF5 copyright notice, including
-## terms governing use, modification, and redistribution, is contained in
-## the files COPYING and Copyright.html.  COPYING can be found at the root
-## of the source code distribution tree; Copyright.html can be found at the
-## root level of an installed copy of the electronic HDF5 document set and
-## is linked from the top-level documents page.  It can also be found at
-## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
-## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
-##
-## HDF5 Library Makefile(.in)
-##
-top_srcdir=@top_srcdir@
-top_builddir=../..
-srcdir=@srcdir@
-@COMMENCE@
-
-## Add include directory to the C preprocessor flags, add -lh5tools and
-## -lhdf5 to the list of libraries.
-##
-CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src  \
-         -I$(top_srcdir)/tools/lib @CPPFLAGS@
-
-## Test programs and scripts.
-##
-TEST_PROGS=h5difftst
-TEST_SCRIPTS=$(srcdir)/testh5diff.sh
-
-## These are our main targets: library and tools.
-##
-LIBHDF5=$(top_builddir)/src/libhdf5.la
-LIBTOOLS=../lib/libh5tools.la
-
-PUB_PROGS=h5diff
-PROGS=$(PUB_PROGS) $(TEST_PROGS) 
-
-## Source and object files for the library; do not install
-##
-LIB_SRC=
-LIB_OBJ=$(LIB_SRC:.c=.lo)
-PUB_LIB=
-
-## Temporary files.  *.h5 are generated by h5diff.  They should
-## copied to the testfiles/ directory if update is required.
-MOSTLYCLEAN=*.h5
-
-## Source and object files for programs...
-##
-PROG_SRC= h5diff_main.c  testh5diff_attr.c testh5diff_basic.c testh5diff_dset.c testh5diff_util.c testh5diff_main.c
-PROG_OBJ=$(PROG_SRC:.c=.lo)
-OBJS= h5diff_main.lo
-TEST_OBJS=testh5diff_attr.lo testh5diff_basic.lo testh5diff_dset.lo testh5diff_util.lo testh5diff_main.lo
-
-PRIVATE_HDR=testh5diff.h
-
-## Source and object files for the tests
-##
-TEST_SRC=
-TEST_OBJ=$(TEST_SRC:.c=.lo)
-
-## Programs have to be built before they can be tested!
-##
-check test _test: $(PROGS)
-
-## How to build the programs...They all depend on the hdf5 library and
-## the tools library compiled in this directory.
-##
-$(PROGS): $(LIBTOOLS) $(LIBHDF5)
-
-h5diff: $(OBJS)
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ $(OBJS) $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-h5difftst: $(TEST_OBJS)
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ $(TEST_OBJS)  $(LIBTOOLS)  $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-
-@CONCLUDE@
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
+
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# HDF5 Library Makefile(.in)
+#
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/conclude' file which was generated with config.status
+# from `./config/conclude.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_DATA = @INSTALL_DATA@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+F77 = @F77@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+# Include src and tools/lib directories
+AM_CFLAGS = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Our main target, h5diff
+bin_PROGRAMS = h5diff
+
+# Test programs and scripts
+TEST_PROG = h5difftst
+TEST_SCRIPT = $(srcdir)/testh5diff.sh
+
+check_PROGRAMS = $(TEST_PROG)
+check_SCRIPTS = $(TEST_SCRIPT)
+
+# Source files for the program
+h5diff_SOURCES = h5diff_main.c
+h5difftst_SOURCES = testh5diff_main.c testh5diff_attr.c    \
+    testh5diff_basic.c testh5diff_dset.c testh5diff_util.c
+
+
+# Programs depend on the main HDF5 library and tools library
+LDADD = $(LIBH5TOOLS) $(LIBHDF5) 
+
+# Temporary files.  *.h5 are generated by h5diff.  They should
+# be copied to the testfiles/ directory if update is required
+MOSTLYCLEANFILES = *.h5
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
+# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and
+# EXTRA_TEST variables are supplied to allow the user to force targets to
+# be built at certain times. 
+LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
+      $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
+        $(EXTRA_PROG)
+
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+subdir = tools/h5diff
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES =
+bin_PROGRAMS = h5diff$(EXEEXT)
+check_PROGRAMS = h5difftst$(EXEEXT)
+PROGRAMS = $(bin_PROGRAMS)
+
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+	$(top_builddir)/src/libhdf5.la
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+	testh5diff_attr.$(OBJEXT) testh5diff_basic.$(OBJEXT) \
+	testh5diff_dset.$(OBJEXT) testh5diff_util.$(OBJEXT)
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+h5difftst_LDADD = $(LDADD)
+h5difftst_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+h5difftst_LDFLAGS =
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+DEFS = @DEFS@
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+@AMDEP_TRUE@DEP_FILES = ./$(DEPDIR)/h5diff_main.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5diff_attr.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5diff_basic.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5diff_dset.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5diff_main.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5diff_util.Po
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+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
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+	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+CFLAGS = @CFLAGS@
+DIST_SOURCES = $(h5diff_SOURCES) $(h5difftst_SOURCES)
+DIST_COMMON = Makefile.am Makefile.in
+SOURCES = $(h5diff_SOURCES) $(h5difftst_SOURCES)
+
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .o .obj
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  tools/h5diff/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+install-binPROGRAMS: $(bin_PROGRAMS)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  if test -f $$p \
+	     || test -f $$p1 \
+	  ; then \
+	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f"; \
+	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f; \
+	  else :; fi; \
+	done
+
+uninstall-binPROGRAMS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+	  echo " rm -f $(DESTDIR)$(bindir)/$$f"; \
+	  rm -f $(DESTDIR)$(bindir)/$$f; \
+	done
+
+clean-binPROGRAMS:
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+
+clean-checkPROGRAMS:
+	@list='$(check_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+h5diff$(EXEEXT): $(h5diff_OBJECTS) $(h5diff_DEPENDENCIES) 
+	@rm -f h5diff$(EXEEXT)
+	$(LINK) $(h5diff_LDFLAGS) $(h5diff_OBJECTS) $(h5diff_LDADD) $(LIBS)
+h5difftst$(EXEEXT): $(h5difftst_OBJECTS) $(h5difftst_DEPENDENCIES) 
+	@rm -f h5difftst$(EXEEXT)
+	$(LINK) $(h5difftst_LDFLAGS) $(h5difftst_OBJECTS) $(h5difftst_LDADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT) core *.core
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5diff_main.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5diff_attr.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5diff_basic.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5diff_dset.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5diff_main.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5diff_util.Po@am__quote@
+
+distclean-depend:
+	-rm -rf ./$(DEPDIR)
+
+.c.o:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `test -f '$<' || echo '$(srcdir)/'`$<
+
+.c.obj:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `cygpath -w $<`
+
+.c.lo:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Plo' tmpdepfile='$(DEPDIR)/$*.TPlo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(LTCOMPILE) -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<
+CCDEPMODE = @CCDEPMODE@
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+
+ETAGS = etags
+ETAGSFLAGS =
+
+tags: TAGS
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(ETAGS_ARGS)$$tags$$unique" \
+	  || $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ../..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+	$(MAKE) $(AM_MAKEFLAGS) $(check_PROGRAMS) $(check_SCRIPTS)
+	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
+check: check-am
+all-am: Makefile $(PROGRAMS) all-local
+
+installdirs:
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+	-test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES)
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
+	clean-libtool mostlyclean-am
+
+distclean: distclean-am
+
+distclean-am: clean-am distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
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+info: info-am
+
+info-am:
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+install-data-am:
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+install-exec-am: install-binPROGRAMS
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+install-info: install-info-am
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+install-man:
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+maintainer-clean: maintainer-clean-am
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+maintainer-clean-am: distclean-am maintainer-clean-generic
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+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+uninstall-am: uninstall-binPROGRAMS uninstall-info-am
+
+.PHONY: GTAGS all all-am all-local check check-TESTS check-am clean \
+	clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
+	clean-libtool distclean distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags distdir dvi \
+	dvi-am info info-am install install-am install-binPROGRAMS \
+	install-data install-data-am install-exec install-exec-am \
+	install-info install-info-am install-man install-strip \
+	installcheck installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-compile \
+	mostlyclean-generic mostlyclean-libtool tags uninstall \
+	uninstall-am uninstall-binPROGRAMS uninstall-info-am
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+lib progs tests ::
+	@$(MAKE) build-$@ || exit 1;                                          \
+	for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X -a $$d != .; then                                \
+	        (set -x; cd $$d && $(MAKE) $@) || exit 1;                     \
+	    fi;                                                               \
+	done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test: $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	   echo "===Tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+        fi
+	@for test in $(TEST_PROG) dummy; do                                  \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNTEST) ./$$test $(TEST_FLAGS) ||                         \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNPARALLEL) ./$$test $(TEST_FLAGS) ||                     \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@for test in $(TEST_SCRIPT) dummy; do                                \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	         srcdir="$(srcdir)"                                           \
+	         /bin/sh $$test $(TEST_FLAGS) ||                              \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	  fi;                                                                 \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	    echo "===Tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) check;                              \
+	    fi;                                                               \
+	done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5dump/Dependencies b/tools/h5dump/Dependencies
deleted file mode 100644
index 9abb2f2..0000000
--- a/tools/h5dump/Dependencies
+++ /dev/null
@@ -1,93 +0,0 @@
-## This file is machine generated on GNU systems.
-## Only temporary changes may be made here.
-
-h5dump.lo: \
-   $(top_srcdir)/tools/h5dump/h5dump.c \
-   $(top_srcdir)/tools/h5dump/h5dump.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/tools/lib/h5tools.h \
-   $(top_srcdir)/tools/lib/h5tools_utils.h \
-   $(top_srcdir)/tools/lib/h5tools_ref.h \
-   $(top_srcdir)/tools/lib/h5trav.h
-h5dumpgentest.lo: \
-   $(top_srcdir)/tools/h5dump/h5dumpgentest.c \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/tools/lib/h5tools.h
diff --git a/tools/h5dump/Makefile.am b/tools/h5dump/Makefile.am
new file mode 100644
index 0000000..6052ec1
--- /dev/null
+++ b/tools/h5dump/Makefile.am
@@ -0,0 +1,43 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include files in /src directory and /tools/lib directory
+AM_CFLAGS=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_PROG=h5dumpgentest
+TEST_SCRIPT=testh5dump.sh $(top_srcdir)/tools/h5dump/testh5dumpxml.sh
+
+check_PROGRAMS=$(TEST_PROG)
+check_SCRIPTS=$(TEST_SCRIPT)
+
+# Our main target, the h5dump tool.
+bin_PROGRAMS=h5dump
+
+# All the programs depend on the hdf5 and h5tools libraries
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+# Temporary files.  *.h5 are generated by h5dumpgentest.  They should
+# copied to the testfiles/ directory if update is required.
+MOSTLYCLEANFILES=*.h5
+DISTCLEANFILES=testh5dump.sh
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in
index 8083106..ea4b21e 100644
--- a/tools/h5dump/Makefile.in
+++ b/tools/h5dump/Makefile.in
@@ -1,79 +1,719 @@
-##
-## Copyright by the Board of Trustees of the University of Illinois.
-## All rights reserved.
-##
-## This file is part of HDF5.  The full HDF5 copyright notice, including
-## terms governing use, modification, and redistribution, is contained in
-## the files COPYING and Copyright.html.  COPYING can be found at the root
-## of the source code distribution tree; Copyright.html can be found at the
-## root level of an installed copy of the electronic HDF5 document set and
-## is linked from the top-level documents page.  It can also be found at
-## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
-## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
-##
-## HDF5 Library Makefile(.in)
-##
-top_srcdir=@top_srcdir@
-top_builddir=../..
-srcdir=@srcdir@
-@COMMENCE@
-
-## Add include directory to the C preprocessor flags, add -lh5tools and
-## -lhdf5 to the list of libraries.
-##
-CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src  \
-         -I$(top_srcdir)/tools/lib @CPPFLAGS@
-
-## Test programs and scripts.
-##
-TEST_PROGS=h5dumpgentest
-TEST_SCRIPTS=./testh5dump.sh $(srcdir)/testh5dumpxml.sh
-
-## These are our main targets: library and tools.
-##
-LIBTOOLS=../lib/libh5tools.la
-LIBHDF5=$(top_builddir)/src/libhdf5.la
-
-PUB_PROGS=h5dump
-PROGS=$(PUB_PROGS) $(TEST_PROGS)
-
-## Source and object files for the library; do not install
-##
-LIB_SRC=
-LIB_OBJ=$(LIB_SRC:.c=.lo)
-PUB_LIB=
-
-## Temporary files.  *.h5 are generated by h5dumpgentest.  They should
-## copied to the testfiles/ directory if update is required.
-MOSTLYCLEAN=*.h5
-CLEAN=
-DISTCLEAN=testh5dump.sh
-
-## Source and object files for programs...
-##
-PROG_SRC=h5dump.c h5dumpgentest.c
-PROG_OBJ=$(PROG_SRC:.c=.lo)
-
-PRIVATE_HDR=h5dump.h
-
-## Source and object files for the tests
-##
-TEST_SRC=
-TEST_OBJ=$(TEST_SRC:.c=.lo)
-
-## Programs have to be built before they can be tested!
-##
-check test _test: $(PROGS)
-
-## How to build the programs...They all depend on the hdf5 library and
-## the tools library compiled in this directory.
-##
-$(PROGS): $(LIBTOOLS) $(LIBHDF5)
-
-h5dump: h5dump.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5dump.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-h5dumpgentest: h5dumpgentest.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5dumpgentest.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-@CONCLUDE@
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
+
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# HDF5 Library Makefile(.in)
+#
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/conclude' file which was generated with config.status
+# from `./config/conclude.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_DATA = @INSTALL_DATA@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+F77 = @F77@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+# Include files in /src directory and /tools/lib directory
+AM_CFLAGS = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_PROG = h5dumpgentest
+TEST_SCRIPT = testh5dump.sh $(top_srcdir)/tools/h5dump/testh5dumpxml.sh
+
+check_PROGRAMS = $(TEST_PROG)
+check_SCRIPTS = $(TEST_SCRIPT)
+
+# Our main target, the h5dump tool.
+bin_PROGRAMS = h5dump
+
+# All the programs depend on the hdf5 and h5tools libraries
+LDADD = $(LIBH5TOOLS) $(LIBHDF5)
+
+# Temporary files.  *.h5 are generated by h5dumpgentest.  They should
+# copied to the testfiles/ directory if update is required.
+MOSTLYCLEANFILES = *.h5
+DISTCLEANFILES = testh5dump.sh
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
+# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and
+# EXTRA_TEST variables are supplied to allow the user to force targets to
+# be built at certain times. 
+LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
+      $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
+        $(EXTRA_PROG)
+
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+subdir = tools/h5dump
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES = testh5dump.sh
+bin_PROGRAMS = h5dump$(EXEEXT)
+check_PROGRAMS = h5dumpgentest$(EXEEXT)
+PROGRAMS = $(bin_PROGRAMS)
+
+h5dump_SOURCES = h5dump.c
+h5dump_OBJECTS = h5dump.$(OBJEXT)
+h5dump_LDADD = $(LDADD)
+h5dump_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+h5dump_LDFLAGS =
+h5dumpgentest_SOURCES = h5dumpgentest.c
+h5dumpgentest_OBJECTS = h5dumpgentest.$(OBJEXT)
+h5dumpgentest_LDADD = $(LDADD)
+h5dumpgentest_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+h5dumpgentest_LDFLAGS =
+
+DEFS = @DEFS@
+DEFAULT_INCLUDES =  -I. -I$(srcdir) -I$(top_builddir)/src
+LDFLAGS = @LDFLAGS@
+LIBS = @LIBS@
+depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
+am__depfiles_maybe = depfiles
+@AMDEP_TRUE@DEP_FILES = ./$(DEPDIR)/h5dump.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/h5dumpgentest.Po
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+CFLAGS = @CFLAGS@
+DIST_SOURCES = h5dump.c h5dumpgentest.c
+DIST_COMMON = Makefile.am Makefile.in testh5dump.sh.in
+SOURCES = h5dump.c h5dumpgentest.c
+
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .o .obj
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  tools/h5dump/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+testh5dump.sh: $(top_builddir)/config.status testh5dump.sh.in
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+install-binPROGRAMS: $(bin_PROGRAMS)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  if test -f $$p \
+	     || test -f $$p1 \
+	  ; then \
+	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f"; \
+	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f; \
+	  else :; fi; \
+	done
+
+uninstall-binPROGRAMS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+	  echo " rm -f $(DESTDIR)$(bindir)/$$f"; \
+	  rm -f $(DESTDIR)$(bindir)/$$f; \
+	done
+
+clean-binPROGRAMS:
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+
+clean-checkPROGRAMS:
+	@list='$(check_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+h5dump$(EXEEXT): $(h5dump_OBJECTS) $(h5dump_DEPENDENCIES) 
+	@rm -f h5dump$(EXEEXT)
+	$(LINK) $(h5dump_LDFLAGS) $(h5dump_OBJECTS) $(h5dump_LDADD) $(LIBS)
+h5dumpgentest$(EXEEXT): $(h5dumpgentest_OBJECTS) $(h5dumpgentest_DEPENDENCIES) 
+	@rm -f h5dumpgentest$(EXEEXT)
+	$(LINK) $(h5dumpgentest_LDFLAGS) $(h5dumpgentest_OBJECTS) $(h5dumpgentest_LDADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT) core *.core
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5dump.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5dumpgentest.Po@am__quote@
+
+distclean-depend:
+	-rm -rf ./$(DEPDIR)
+
+.c.o:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `test -f '$<' || echo '$(srcdir)/'`$<
+
+.c.obj:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `cygpath -w $<`
+
+.c.lo:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Plo' tmpdepfile='$(DEPDIR)/$*.TPlo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(LTCOMPILE) -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<
+CCDEPMODE = @CCDEPMODE@
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+
+ETAGS = etags
+ETAGSFLAGS =
+
+tags: TAGS
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(ETAGS_ARGS)$$tags$$unique" \
+	  || $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ../..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+	$(MAKE) $(AM_MAKEFLAGS) $(check_PROGRAMS) $(check_SCRIPTS)
+	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
+check: check-am
+all-am: Makefile $(PROGRAMS) all-local
+
+installdirs:
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+	-test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES)
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-test -z "$(DISTCLEANFILES)" || rm -f $(DISTCLEANFILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
+	clean-libtool mostlyclean-am
+
+distclean: distclean-am
+
+distclean-am: clean-am distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-exec-am: install-binPROGRAMS
+
+install-info: install-info-am
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+uninstall-am: uninstall-binPROGRAMS uninstall-info-am
+
+.PHONY: GTAGS all all-am all-local check check-TESTS check-am clean \
+	clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
+	clean-libtool distclean distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags distdir dvi \
+	dvi-am info info-am install install-am install-binPROGRAMS \
+	install-data install-data-am install-exec install-exec-am \
+	install-info install-info-am install-man install-strip \
+	installcheck installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-compile \
+	mostlyclean-generic mostlyclean-libtool tags uninstall \
+	uninstall-am uninstall-binPROGRAMS uninstall-info-am
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+lib progs tests ::
+	@$(MAKE) build-$@ || exit 1;                                          \
+	for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X -a $$d != .; then                                \
+	        (set -x; cd $$d && $(MAKE) $@) || exit 1;                     \
+	    fi;                                                               \
+	done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test: $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	   echo "===Tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+        fi
+	@for test in $(TEST_PROG) dummy; do                                  \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNTEST) ./$$test $(TEST_FLAGS) ||                         \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNPARALLEL) ./$$test $(TEST_FLAGS) ||                     \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@for test in $(TEST_SCRIPT) dummy; do                                \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	         srcdir="$(srcdir)"                                           \
+	         /bin/sh $$test $(TEST_FLAGS) ||                              \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	  fi;                                                                 \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	    echo "===Tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) check;                              \
+	    fi;                                                               \
+	done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5import/Dependencies b/tools/h5import/Dependencies
deleted file mode 100644
index 39f4f6b..0000000
--- a/tools/h5import/Dependencies
+++ /dev/null
@@ -1,8 +0,0 @@
-## This file is machine generated on GNU systems.
-## Only temporary changes may be made here.
-
-h5import.lo: \
-   $(top_srcdir)/tools/h5import/h5import.c \
-   $(top_srcdir)/tools/h5import/h5import.h
-h5importtest.lo: \
-   $(top_srcdir)/tools/h5import/h5importtest.c
diff --git a/tools/h5import/Makefile.am b/tools/h5import/Makefile.am
new file mode 100644
index 0000000..d185092
--- /dev/null
+++ b/tools/h5import/Makefile.am
@@ -0,0 +1,38 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src and tools/lib directories
+AM_CFLAGS=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_PROG=h5importtest
+TEST_SCRIPT=$(srcdir)/h5importtestutil.sh
+
+check_PROGRAMS=$(TEST_PROG)
+check_SCRIPT=h5importtestutil.sh
+
+# Our main targets
+bin_PROGRAMS=h5import
+
+# All programs depend on the main hdf5 library and the tools library
+LDADD=$(LIBHDF5) $(LIBH5TOOLS)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in
index cd16af8..daddb25 100755
--- a/tools/h5import/Makefile.in
+++ b/tools/h5import/Makefile.in
@@ -1,77 +1,710 @@
-##
-## Copyright by the Board of Trustees of the University of Illinois.
-## All rights reserved.
-##
-## This file is part of HDF5.  The full HDF5 copyright notice, including
-## terms governing use, modification, and redistribution, is contained in
-## the files COPYING and Copyright.html.  COPYING can be found at the root
-## of the source code distribution tree; Copyright.html can be found at the
-## root level of an installed copy of the electronic HDF5 document set and
-## is linked from the top-level documents page.  It can also be found at
-## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
-## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
-##
-## HDF5 Library Makefile(.in)
-## 
-top_srcdir=@top_srcdir@
-top_builddir=../..
-srcdir=@srcdir@
-@COMMENCE@
-
-## Add include directory to the C preprocessor flags, add -lh5tools and
-## -lhdf5 to the list of libraries.
-##
-CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src  \
-         -I$(top_srcdir)/tools/lib @CPPFLAGS@
-
-## Test programs and scripts.
-##
-TEST_PROGS= h5importtest
-TEST_SCRIPTS=$(srcdir)/h5importtestutil.sh
-
-## These are our main targets: library and tools.
-##
-LIBTOOLS=../lib/libh5tools.la
-LIBHDF5=$(top_builddir)/src/libhdf5.la
-
-PUB_PROGS=h5import
-PROGS=$(PUB_PROGS) $(TEST_PROGS) h5importtest
-
-## Source and object files for the library; do not install
-##
-LIB_SRC=
-LIB_OBJ=$(LIB_SRC:.c=.lo)
-PUB_LIB=
-
-## Source and object files for programs...
-##
-PROG_SRC=h5import.c h5importtest.c
-PROG_OBJ=$(PROG_SRC:.c=.lo)
-
-PRIVATE_HDR=
-
-## Source and object files for the tests
-##
-TEST_SRC=
-TEST_OBJ=$(TEST_SRC:.c=.lo)
-
-## Programs have to be built before they can be tested!
-##
-check test _test: $(PROGS)
-
-## How to build the programs...They all depend on the hdf5 library and
-## the tools library compiled in this directory.
-##
-$(PROGS): $(LIBTOOLS) $(LIBHDF5)
-
-h5import: h5import.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5import.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-h5importtest: h5importtest.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5importtest.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-@CONCLUDE@
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
 
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
 
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
 
+@SET_MAKE@
 
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# HDF5 Library Makefile(.in)
+#
 
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/conclude' file which was generated with config.status
+# from `./config/conclude.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_DATA = @INSTALL_DATA@
+install_sh_DATA = $(install_sh) -c -m 644
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+INSTALL_HEADER = $(INSTALL_DATA)
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+host_alias = @host_alias@
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+
+EXEEXT = @EXEEXT@
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+# Install directories that automake doesn't know about
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+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
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+AR = @AR@
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+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
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+CONFIG_DATE = @CONFIG_DATE@
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+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
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+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
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+FC = @FC@
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+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
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+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
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+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
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+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
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+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
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+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
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+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+# Include src and tools/lib directories
+AM_CFLAGS = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
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+# Test programs and scripts
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+
+check_PROGRAMS = $(TEST_PROG)
+check_SCRIPT = h5importtestutil.sh
+
+# Our main targets
+bin_PROGRAMS = h5import
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+# All programs depend on the main hdf5 library and the tools library
+LDADD = $(LIBHDF5) $(LIBH5TOOLS)
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
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+      $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
+        $(EXTRA_PROG)
+
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+subdir = tools/h5import
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
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+CONFIG_CLEAN_FILES =
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+PROGRAMS = $(bin_PROGRAMS)
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+h5import_SOURCES = h5import.c
+h5import_OBJECTS = h5import.$(OBJEXT)
+h5import_LDADD = $(LDADD)
+h5import_DEPENDENCIES = $(top_builddir)/src/libhdf5.la \
+	$(top_builddir)/tools/lib/libh5tools.la
+h5import_LDFLAGS =
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+h5importtest_OBJECTS = h5importtest.$(OBJEXT)
+h5importtest_LDADD = $(LDADD)
+h5importtest_DEPENDENCIES = $(top_builddir)/src/libhdf5.la \
+	$(top_builddir)/tools/lib/libh5tools.la
+h5importtest_LDFLAGS =
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+DEFS = @DEFS@
+DEFAULT_INCLUDES =  -I. -I$(srcdir) -I$(top_builddir)/src
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+am__depfiles_maybe = depfiles
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+@AMDEP_TRUE@	./$(DEPDIR)/h5importtest.Po
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+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
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+	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
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+LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+CFLAGS = @CFLAGS@
+DIST_SOURCES = h5import.c h5importtest.c
+DIST_COMMON = Makefile.am Makefile.in
+SOURCES = h5import.c h5importtest.c
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+all: all-am
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+.SUFFIXES:
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+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  tools/h5import/Makefile
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+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
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+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  if test -f $$p \
+	     || test -f $$p1 \
+	  ; then \
+	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f"; \
+	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f; \
+	  else :; fi; \
+	done
+
+uninstall-binPROGRAMS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+	  echo " rm -f $(DESTDIR)$(bindir)/$$f"; \
+	  rm -f $(DESTDIR)$(bindir)/$$f; \
+	done
+
+clean-binPROGRAMS:
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+
+clean-checkPROGRAMS:
+	@list='$(check_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+h5import$(EXEEXT): $(h5import_OBJECTS) $(h5import_DEPENDENCIES) 
+	@rm -f h5import$(EXEEXT)
+	$(LINK) $(h5import_LDFLAGS) $(h5import_OBJECTS) $(h5import_LDADD) $(LIBS)
+h5importtest$(EXEEXT): $(h5importtest_OBJECTS) $(h5importtest_DEPENDENCIES) 
+	@rm -f h5importtest$(EXEEXT)
+	$(LINK) $(h5importtest_LDFLAGS) $(h5importtest_OBJECTS) $(h5importtest_LDADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT) core *.core
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5import.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5importtest.Po@am__quote@
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+distclean-depend:
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+@AMDEP_TRUE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
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+CCDEPMODE = @CCDEPMODE@
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
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+	mkid -fID $$unique
+
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+		$(TAGS_FILES) $(LISP)
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+top_distdir = ../..
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+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
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+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+	$(MAKE) $(AM_MAKEFLAGS) $(check_PROGRAMS)
+	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
+check: check-am
+all-am: Makefile $(PROGRAMS) all-local
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+install: install-am
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+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
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+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
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+
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+#
+#
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+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
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+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
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+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
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+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
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+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
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+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
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+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
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+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
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+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+lib progs tests ::
+	@$(MAKE) build-$@ || exit 1;                                          \
+	for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X -a $$d != .; then                                \
+	        (set -x; cd $$d && $(MAKE) $@) || exit 1;                     \
+	    fi;                                                               \
+	done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test: $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	   echo "===Tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+        fi
+	@for test in $(TEST_PROG) dummy; do                                  \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNTEST) ./$$test $(TEST_FLAGS) ||                         \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNPARALLEL) ./$$test $(TEST_FLAGS) ||                     \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@for test in $(TEST_SCRIPT) dummy; do                                \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	         srcdir="$(srcdir)"                                           \
+	         /bin/sh $$test $(TEST_FLAGS) ||                              \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	  fi;                                                                 \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	    echo "===Tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) check;                              \
+	    fi;                                                               \
+	done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5jam/Dependencies b/tools/h5jam/Dependencies
deleted file mode 100644
index 833fa1f..0000000
--- a/tools/h5jam/Dependencies
+++ /dev/null
@@ -1,89 +0,0 @@
-## This file is machine generated on GNU systems.
-## Only temporary changes may be made here.
-
-h5jam.lo: \
-   $(top_srcdir)/tools/h5jam/h5jam.c \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/tools/lib/h5tools_utils.h
-h5unjam.lo: \
-   $(top_srcdir)/tools/h5jam/h5unjam.c \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/tools/lib/h5tools_utils.h
diff --git a/tools/h5jam/Makefile.am b/tools/h5jam/Makefile.am
new file mode 100644
index 0000000..9378cb7
--- /dev/null
+++ b/tools/h5jam/Makefile.am
@@ -0,0 +1,38 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+include $(top_srcdir)/config/commence.am
+
+# Include src and tools/lib directories
+AM_CFLAGS=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+bin_PROGRAMS=h5jam h5unjam
+check_PROGRAMS=tellub h5jamgentest getub
+TEST_SCRIPT=testh5jam.sh
+
+check_SCRIPTS=$(TEST_SCRIPT)
+
+# Link against the main HDF5 library and tools library
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+## Temporary files.  *.h5 are generated by jamgentest.  They should
+## copied to the testfiles/ directory if update is required.
+MOSTLYCLEANFILES=*.h5 *.txt
+DISTCLEANFILES=testh5jam.sh
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in
index ccb2018..45d84c6 100644
--- a/tools/h5jam/Makefile.in
+++ b/tools/h5jam/Makefile.in
@@ -1,96 +1,744 @@
-## HDF5 Library Makefile(.in)
-##
-## Copyright by the Board of Trustees of the University of Illinois.
-## All rights reserved.
-##
-## This file is part of HDF5.  The full HDF5 copyright notice, including
-## terms governing use, modification, and redistribution, is contained in
-## the files COPYING and Copyright.html.  COPYING can be found at the root
-## of the source code distribution tree; Copyright.html can be found at the
-## root level of an installed copy of the electronic HDF5 document set and
-## is linked from the top-level documents page.  It can also be found at
-## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
-## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
-## 
-top_srcdir=@top_srcdir@
-top_builddir=../..
-srcdir=@srcdir@
-@COMMENCE@
-
-## Add include directory to the C preprocessor flags, add -lh5tools and
-## -lhdf5 to the list of libraries.
-##
-CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src  \
-         -I$(top_srcdir)/tools/lib @CPPFLAGS@
-
-## Test programs and scripts.
-##
-TEST_PROGS=
-TEST_SCRIPTS=./testh5jam.sh
-
-OTHER_PROGS=tellub h5jamgentest getub
-## These are our main targets: library and tools.
-##
-LIBTOOLS=../lib/libh5tools.la
-LIBHDF5=$(top_builddir)/src/libhdf5.la
-
-PUB_PROGS=h5jam h5unjam 
-
-PROGS=$(PUB_PROGS) $(TEST_PROGS) $(OTHER_PROGS)
-
-## Source and object files for the library; do not install
-##
-LIB_SRC=
-LIB_OBJ=$(LIB_SRC:.c=.lo)
-PUB_LIB=
-
-## Temporary files.  *.h5 are generated by jamgentest.  They should
-## copied to the testfiles/ directory if update is required.
-MOSTLYCLEAN=*.h5 *.txt
-CLEAN=
-DISTCLEAN=testh5jam.sh
-
-#### FIX AFTER HERE
-
-## Source and object files for programs...
-##
-PROG_SRC=h5jam.c h5unjam.c 
-PROG_OBJ=$(PROG_SRC:.c=.lo)
-
-PRIVATE_HDR=
-
-OTHER_SRC=tellub.c h5jamgentest.c getub.c
-OTHER_OBJ=$(OTHER_SRC:.c=.lo)
-
-## Source and object files for the tests (to be cleaned up)
-##
-TEST_SRC=
-TEST_OBJ=$(TEST_SRC:.c=.lo) $(OTHER_OBJ)
-
-## Programs have to be built before they can be tested!
-##
-check test _test: $(PROGS)
-
-## How to build the programs...They all depend on the hdf5 library and
-## the tools library compiled in this directory.
-##
-$(PROGS): $(LIBTOOLS) $(LIBHDF5)
-
-h5jam: h5jam.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5jam.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-h5unjam: h5unjam.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5unjam.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-h5jamgentest: h5jamgentest.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5jamgentest.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-tellub: tellub.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ tellub.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-getub: getub.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ getub.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-check-all: check 
-
-@CONCLUDE@
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
+
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/conclude' file which was generated with config.status
+# from `./config/conclude.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_DATA = @INSTALL_DATA@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+F77 = @F77@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# HDF5 Library Makefile(.in)
+#
+
+# Include src and tools/lib directories
+AM_CFLAGS = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+bin_PROGRAMS = h5jam h5unjam
+check_PROGRAMS = tellub h5jamgentest getub
+TEST_SCRIPT = testh5jam.sh
+
+check_SCRIPTS = $(TEST_SCRIPT)
+
+# Link against the main HDF5 library and tools library
+LDADD = $(LIBH5TOOLS) $(LIBHDF5)
+
+MOSTLYCLEANFILES = *.h5 *.txt
+DISTCLEANFILES = testh5jam.sh
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
+# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and
+# EXTRA_TEST variables are supplied to allow the user to force targets to
+# be built at certain times. 
+LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
+      $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
+        $(EXTRA_PROG)
+
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+subdir = tools/h5jam
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES = testh5jam.sh
+bin_PROGRAMS = h5jam$(EXEEXT) h5unjam$(EXEEXT)
+check_PROGRAMS = tellub$(EXEEXT) h5jamgentest$(EXEEXT) getub$(EXEEXT)
+PROGRAMS = $(bin_PROGRAMS)
+
+getub_SOURCES = getub.c
+getub_OBJECTS = getub.$(OBJEXT)
+getub_LDADD = $(LDADD)
+getub_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+getub_LDFLAGS =
+h5jam_SOURCES = h5jam.c
+h5jam_OBJECTS = h5jam.$(OBJEXT)
+h5jam_LDADD = $(LDADD)
+h5jam_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+h5jam_LDFLAGS =
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+h5jamgentest_LDADD = $(LDADD)
+h5jamgentest_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+h5jamgentest_LDFLAGS =
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+h5unjam_OBJECTS = h5unjam.$(OBJEXT)
+h5unjam_LDADD = $(LDADD)
+h5unjam_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+h5unjam_LDFLAGS =
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+tellub_OBJECTS = tellub.$(OBJEXT)
+tellub_LDADD = $(LDADD)
+tellub_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+tellub_LDFLAGS =
+
+DEFS = @DEFS@
+DEFAULT_INCLUDES =  -I. -I$(srcdir) -I$(top_builddir)/src
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+am__depfiles_maybe = depfiles
+@AMDEP_TRUE@DEP_FILES = ./$(DEPDIR)/getub.Po ./$(DEPDIR)/h5jam.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/h5jamgentest.Po ./$(DEPDIR)/h5unjam.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/tellub.Po
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+CFLAGS = @CFLAGS@
+DIST_SOURCES = getub.c h5jam.c h5jamgentest.c h5unjam.c tellub.c
+DIST_COMMON = Makefile.am Makefile.in testh5jam.sh.in
+SOURCES = getub.c h5jam.c h5jamgentest.c h5unjam.c tellub.c
+
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .o .obj
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  tools/h5jam/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+testh5jam.sh: $(top_builddir)/config.status testh5jam.sh.in
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+install-binPROGRAMS: $(bin_PROGRAMS)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  if test -f $$p \
+	     || test -f $$p1 \
+	  ; then \
+	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f"; \
+	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f; \
+	  else :; fi; \
+	done
+
+uninstall-binPROGRAMS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+	  echo " rm -f $(DESTDIR)$(bindir)/$$f"; \
+	  rm -f $(DESTDIR)$(bindir)/$$f; \
+	done
+
+clean-binPROGRAMS:
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+
+clean-checkPROGRAMS:
+	@list='$(check_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+getub$(EXEEXT): $(getub_OBJECTS) $(getub_DEPENDENCIES) 
+	@rm -f getub$(EXEEXT)
+	$(LINK) $(getub_LDFLAGS) $(getub_OBJECTS) $(getub_LDADD) $(LIBS)
+h5jam$(EXEEXT): $(h5jam_OBJECTS) $(h5jam_DEPENDENCIES) 
+	@rm -f h5jam$(EXEEXT)
+	$(LINK) $(h5jam_LDFLAGS) $(h5jam_OBJECTS) $(h5jam_LDADD) $(LIBS)
+h5jamgentest$(EXEEXT): $(h5jamgentest_OBJECTS) $(h5jamgentest_DEPENDENCIES) 
+	@rm -f h5jamgentest$(EXEEXT)
+	$(LINK) $(h5jamgentest_LDFLAGS) $(h5jamgentest_OBJECTS) $(h5jamgentest_LDADD) $(LIBS)
+h5unjam$(EXEEXT): $(h5unjam_OBJECTS) $(h5unjam_DEPENDENCIES) 
+	@rm -f h5unjam$(EXEEXT)
+	$(LINK) $(h5unjam_LDFLAGS) $(h5unjam_OBJECTS) $(h5unjam_LDADD) $(LIBS)
+tellub$(EXEEXT): $(tellub_OBJECTS) $(tellub_DEPENDENCIES) 
+	@rm -f tellub$(EXEEXT)
+	$(LINK) $(tellub_LDFLAGS) $(tellub_OBJECTS) $(tellub_LDADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT) core *.core
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/getub.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5jam.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5jamgentest.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5unjam.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/tellub.Po@am__quote@
+
+distclean-depend:
+	-rm -rf ./$(DEPDIR)
+
+.c.o:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `test -f '$<' || echo '$(srcdir)/'`$<
+
+.c.obj:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `cygpath -w $<`
+
+.c.lo:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Plo' tmpdepfile='$(DEPDIR)/$*.TPlo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(LTCOMPILE) -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<
+CCDEPMODE = @CCDEPMODE@
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+
+ETAGS = etags
+ETAGSFLAGS =
+
+tags: TAGS
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(ETAGS_ARGS)$$tags$$unique" \
+	  || $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ../..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+	$(MAKE) $(AM_MAKEFLAGS) $(check_PROGRAMS) $(check_SCRIPTS)
+	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
+check: check-am
+all-am: Makefile $(PROGRAMS) all-local
+
+installdirs:
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+	-test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES)
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-test -z "$(DISTCLEANFILES)" || rm -f $(DISTCLEANFILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
+	clean-libtool mostlyclean-am
+
+distclean: distclean-am
+
+distclean-am: clean-am distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
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+info: info-am
+
+info-am:
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+install-data-am:
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+install-exec-am: install-binPROGRAMS
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+install-info: install-info-am
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+install-man:
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+installcheck-am:
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+maintainer-clean: maintainer-clean-am
+
+maintainer-clean-am: distclean-am maintainer-clean-generic
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+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+uninstall-am: uninstall-binPROGRAMS uninstall-info-am
+
+.PHONY: GTAGS all all-am all-local check check-TESTS check-am clean \
+	clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
+	clean-libtool distclean distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags distdir dvi \
+	dvi-am info info-am install install-am install-binPROGRAMS \
+	install-data install-data-am install-exec install-exec-am \
+	install-info install-info-am install-man install-strip \
+	installcheck installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-compile \
+	mostlyclean-generic mostlyclean-libtool tags uninstall \
+	uninstall-am uninstall-binPROGRAMS uninstall-info-am
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+lib progs tests ::
+	@$(MAKE) build-$@ || exit 1;                                          \
+	for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X -a $$d != .; then                                \
+	        (set -x; cd $$d && $(MAKE) $@) || exit 1;                     \
+	    fi;                                                               \
+	done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test: $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	   echo "===Tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+        fi
+	@for test in $(TEST_PROG) dummy; do                                  \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNTEST) ./$$test $(TEST_FLAGS) ||                         \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNPARALLEL) ./$$test $(TEST_FLAGS) ||                     \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@for test in $(TEST_SCRIPT) dummy; do                                \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	         srcdir="$(srcdir)"                                           \
+	         /bin/sh $$test $(TEST_FLAGS) ||                              \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	  fi;                                                                 \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	    echo "===Tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) check;                              \
+	    fi;                                                               \
+	done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5ls/Dependencies b/tools/h5ls/Dependencies
deleted file mode 100644
index 1aefa78..0000000
--- a/tools/h5ls/Dependencies
+++ /dev/null
@@ -1,47 +0,0 @@
-## This file is machine generated on GNU systems.
-## Only temporary changes may be made here.
-
-h5ls.lo: \
-   $(top_srcdir)/tools/h5ls/h5ls.c \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
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diff --git a/tools/h5ls/Makefile.am b/tools/h5ls/Makefile.am
new file mode 100644
index 0000000..ea9a149
--- /dev/null
+++ b/tools/h5ls/Makefile.am
@@ -0,0 +1,35 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src and tools/lib directories
+AM_CFLAGS=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_SCRIPT=$(srcdir)/testh5ls.sh
+check_SCRIPTS=$(TEST_SCRIPT)
+
+# This is our main target, the h5ls tool
+bin_PROGRAMS=h5ls
+
+# All programs depend on the hdf5 and h5tools libraries
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in
index 40fd20a..90af7f3 100644
--- a/tools/h5ls/Makefile.in
+++ b/tools/h5ls/Makefile.in
@@ -1,63 +1,687 @@
-##
-## Copyright by the Board of Trustees of the University of Illinois.
-## All rights reserved.
-##
-## This file is part of HDF5.  The full HDF5 copyright notice, including
-## terms governing use, modification, and redistribution, is contained in
-## the files COPYING and Copyright.html.  COPYING can be found at the root
-## of the source code distribution tree; Copyright.html can be found at the
-## root level of an installed copy of the electronic HDF5 document set and
-## is linked from the top-level documents page.  It can also be found at
-## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
-## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
-##
-## HDF5 Library Makefile(.in)
-##
-top_srcdir=@top_srcdir@
-top_builddir=../..
-srcdir=@srcdir@
-@COMMENCE@
-
-## Add include directory to the C preprocessor flags, add -lh5tools and
-## -lhdf5 to the list of libraries.
-##
-CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src  \
-         -I$(top_srcdir)/tools/lib @CPPFLAGS@
-
-## Test programs and scripts.
-##
-TEST_PROGS=
-TEST_SCRIPTS=$(srcdir)/testh5ls.sh
-
-## These are our main targets: library and tools.
-##
-LIBTOOLS=../lib/libh5tools.la
-LIBHDF5=$(top_builddir)/src/libhdf5.la
-PUB_PROGS=h5ls
-PROGS=$(PUB_PROGS) $(TEST_PROGS)
-
-## Source and object files for the library; do not install
-LIB_SRC=
-LIB_OBJ=$(LIB_SRC:.c=.lo)
-PUB_LIB=
-
-## Source and object files for programs...
-PROG_SRC=h5ls.c
-PROG_OBJ=$(PROG_SRC:.c=.lo)
-PRIVATE_HDR=
-
-## Source and object files for the tests
-TEST_SRC=
-TEST_OBJ=$(TEST_SRC:.c=.lo)
-
-## Programs have to be built before they can be tested!
-check test _test: $(PROGS)
-
-## How to build the programs... They all depend on the hdf5 library and
-## the tools library compiled in this directory.
-$(PROGS): $(LIBTOOLS) $(LIBHDF5)
-
-h5ls: h5ls.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5ls.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-@CONCLUDE@
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
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+
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
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+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
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+
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+h5ls_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
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+
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+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
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+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
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+
+.SUFFIXES:
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+	cd $(top_srcdir) && \
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+	     || test -f $$p1 \
+	  ; then \
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+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f"; \
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+	  rm -f $$p $$f ; \
+	done
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+
+installdirs:
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-am
+
+distclean-am: clean-am distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-exec-am: install-binPROGRAMS
+
+install-info: install-info-am
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+uninstall-am: uninstall-binPROGRAMS uninstall-info-am
+
+.PHONY: GTAGS all all-am all-local check check-TESTS check-am clean \
+	clean-binPROGRAMS clean-generic clean-libtool distclean \
+	distclean-compile distclean-depend distclean-generic \
+	distclean-libtool distclean-tags distdir dvi dvi-am info \
+	info-am install install-am install-binPROGRAMS install-data \
+	install-data-am install-exec install-exec-am install-info \
+	install-info-am install-man install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-compile \
+	mostlyclean-generic mostlyclean-libtool tags uninstall \
+	uninstall-am uninstall-binPROGRAMS uninstall-info-am
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+lib progs tests ::
+	@$(MAKE) build-$@ || exit 1;                                          \
+	for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X -a $$d != .; then                                \
+	        (set -x; cd $$d && $(MAKE) $@) || exit 1;                     \
+	    fi;                                                               \
+	done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test: $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	   echo "===Tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+        fi
+	@for test in $(TEST_PROG) dummy; do                                  \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNTEST) ./$$test $(TEST_FLAGS) ||                         \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNPARALLEL) ./$$test $(TEST_FLAGS) ||                     \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@for test in $(TEST_SCRIPT) dummy; do                                \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	         srcdir="$(srcdir)"                                           \
+	         /bin/sh $$test $(TEST_FLAGS) ||                              \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	  fi;                                                                 \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	    echo "===Tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) check;                              \
+	    fi;                                                               \
+	done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5repack/Dependencies b/tools/h5repack/Dependencies
deleted file mode 100644
index 878955c..0000000
--- a/tools/h5repack/Dependencies
+++ /dev/null
@@ -1,638 +0,0 @@
-## This file is machine generated on GNU systems.
-## Only temporary changes may be made here.
-
-h5repack.lo: \
-   $(top_srcdir)/tools/h5repack/h5repack.c \
-   $(top_srcdir)/tools/h5repack/h5repack.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/tools/lib/h5trav.h \
-   $(top_srcdir)/tools/lib/h5diff.h \
-   $(top_srcdir)/tools/lib/h5tools.h
-h5repack_copy.lo: \
-   $(top_srcdir)/tools/h5repack/h5repack_copy.c \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/tools/h5repack/h5repack.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/tools/lib/h5trav.h \
-   $(top_srcdir)/tools/lib/h5diff.h \
-   $(top_srcdir)/tools/lib/h5tools.h
-h5repack_filters.lo: \
-   $(top_srcdir)/tools/h5repack/h5repack_filters.c \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/test/h5test.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/tools/h5repack/h5repack.h \
-   $(top_srcdir)/tools/lib/h5trav.h \
-   $(top_srcdir)/tools/lib/h5diff.h \
-   $(top_srcdir)/tools/lib/h5tools.h
-h5repack_refs.lo: \
-   $(top_srcdir)/tools/h5repack/h5repack_refs.c \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/tools/h5repack/h5repack.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/tools/lib/h5trav.h \
-   $(top_srcdir)/tools/lib/h5diff.h \
-   $(top_srcdir)/tools/lib/h5tools.h
-h5repack_list.lo: \
-   $(top_srcdir)/tools/h5repack/h5repack_list.c \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/tools/h5repack/h5repack.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
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-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/tools/h5repack/h5repack.h \
-   $(top_srcdir)/tools/lib/h5trav.h \
-   $(top_srcdir)/tools/lib/h5diff.h \
-   $(top_srcdir)/tools/lib/h5tools.h
diff --git a/tools/h5repack/Makefile.am b/tools/h5repack/Makefile.am
new file mode 100644
index 0000000..be595a1
--- /dev/null
+++ b/tools/h5repack/Makefile.am
@@ -0,0 +1,56 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src, test, and tools/lib directories
+AM_CFLAGS=-I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_SCRIPT=h5repack.sh
+TEST_PROG=h5repacktst
+noinst_PROGRAMS=testh5repack_detect_szip
+
+check_SCRIPTS=$(TEST_SCRIPT)
+check_PROGRAMS=$(TEST_PROG)
+
+# Our main target, h5repack tool
+bin_PROGRAMS=h5repack
+
+# All programs depend on the hdf5 library and the tools library
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+# Source files
+COMMON_SOURCES=h5repack.c h5repack_copy.c h5repack_filters.c \
+        h5repack_list.c h5repack_opttable.c h5repack_parse.c h5repack_refs.c   \
+        h5repack_verify.c
+
+h5repack_SOURCES=$(COMMON_SOURCES) h5repack_main.c
+
+h5repacktst_SOURCES=$(COMMON_SOURCES) testh5repack_attr.c testh5repack_dset.c \
+        testh5repack_main.c testh5repack_make.c testh5repack_util.c
+
+testh5repack_detect_szip_SOURCES=testh5repack_detect_szip.c
+
+# Temporary files.  *.h5 are generated by h5repack.  They should
+# copied to the testfiles/ directory if update is required.
+MOSTLYCLEANFILES=*.h5
+DISTCLEANFILES=h5repack.sh
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in
index 5d6a9c3..d02c45e 100644
--- a/tools/h5repack/Makefile.in
+++ b/tools/h5repack/Makefile.in
@@ -1,87 +1,787 @@
-##
-## Copyright by the Board of Trustees of the University of Illinois.
-## All rights reserved.
-##
-## This file is part of HDF5.  The full HDF5 copyright notice, including
-## terms governing use, modification, and redistribution, is contained in
-## the files COPYING and Copyright.html.  COPYING can be found at the root
-## of the source code distribution tree; Copyright.html can be found at the
-## root level of an installed copy of the electronic HDF5 document set and
-## is linked from the top-level documents page.  It can also be found at
-## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
-## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
-##
-## HDF5 Library Makefile(.in)
-##
-top_srcdir=@top_srcdir@
-top_builddir=../..
-srcdir=@srcdir@
-@COMMENCE@
-
-## Add include directory to the C preprocessor flags, add -lh5tools and
-## -lhdf5 to the list of libraries.
-## Add also the test include directory for #defines
-CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src  \
-         -I$(top_srcdir)/test  \
-         -I$(top_srcdir)/tools/lib @CPPFLAGS@  
-
-## Test programs and scripts.
-##
-TEST_PROGS=h5repacktst
-TEST_SCRIPTS=./h5repack.sh
-PRIV_PROGS=testh5repack_detect_szip
-
-## These are our main targets: library and tools.
-##
-LIBHDF5=$(top_builddir)/src/libhdf5.la
-LIBTOOLS=../lib/libh5tools.la
-
-PUB_PROGS=h5repack
-PROGS=$(PUB_PROGS) $(TEST_PROGS) $(PRIV_PROGS)
-
-## Source and object files for the library; do not install
-##
-LIB_SRC=
-LIB_OBJ=$(LIB_SRC:.c=.lo)
-PUB_LIB=
-
-## Temporary files.  *.h5 are generated by h5repack.  They should
-## copied to the testfiles/ directory if update is required.
-MOSTLYCLEAN=*.h5
-DISTCLEAN=h5repack.sh
-
-## Source and object files for programs...
-##
-PROG_SRC=h5repack.c h5repack_copy.c h5repack_filters.c  h5repack_refs.c  h5repack_list.c h5repack_main.c h5repack_opttable.c h5repack_parse.c h5repack_verify.c testh5repack_attr.c testh5repack_dset.c   testh5repack_main.c testh5repack_make.c  testh5repack_util.c
-OBJS=h5repack.lo h5repack_filters.lo h5repack_copy.lo h5repack_refs.lo  h5repack_list.lo h5repack_main.lo h5repack_opttable.lo h5repack_parse.lo h5repack_verify.lo	
-TEST_OBJS=h5repack.lo h5repack_filters.lo  h5repack_copy.lo h5repack_refs.lo  h5repack_list.lo h5repack_opttable.lo h5repack_parse.lo h5repack_verify.lo testh5repack_attr.lo testh5repack_dset.lo  testh5repack_main.lo testh5repack_make.lo  testh5repack_util.lo
-DETECT_OBJS=testh5repack_detect_szip.lo
-PROG_OBJ=$(PROG_SRC:.c=.lo) $(DETECT_OBJS)
-
-PRIVATE_HDR=
-
-## Source and object files for the tests
-##
-TEST_SRC=
-TEST_OBJ=$(TEST_SRC:.c=.lo)
-
-## Programs have to be built before they can be tested!
-##
-check test _test: $(PROGS)
-
-## How to build the programs...They all depend on the hdf5 library and
-## the tools library compiled in this directory.
-##
-$(PROGS): $(LIBTOOLS) $(LIBHDF5)
-
-h5repack: $(OBJS)
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ $(OBJS)  $(LIBTOOLS)  $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-h5repacktst: $(TEST_OBJS)
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ $(TEST_OBJS)  $(LIBTOOLS)  $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-testh5repack_detect_szip: $(DETECT_OBJS)
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ $(DETECT_OBJS)  $(LIBTOOLS)  $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-
-@CONCLUDE@
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
+
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# HDF5 Library Makefile(.in)
+#
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/conclude' file which was generated with config.status
+# from `./config/conclude.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_DATA = @INSTALL_DATA@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+F77 = @F77@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+# Include src, test, and tools/lib directories
+AM_CFLAGS = -I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_SCRIPT = h5repack.sh
+TEST_PROG = h5repacktst
+noinst_PROGRAMS = testh5repack_detect_szip
+
+check_SCRIPTS = $(TEST_SCRIPT)
+check_PROGRAMS = $(TEST_PROG)
+
+# Our main target, h5repack tool
+bin_PROGRAMS = h5repack
+
+# All programs depend on the hdf5 library and the tools library
+LDADD = $(LIBH5TOOLS) $(LIBHDF5)
+
+# Source files
+COMMON_SOURCES = h5repack.c h5repack_copy.c h5repack_filters.c \
+        h5repack_list.c h5repack_opttable.c h5repack_parse.c h5repack_refs.c   \
+        h5repack_verify.c
+
+
+h5repack_SOURCES = $(COMMON_SOURCES) h5repack_main.c
+
+h5repacktst_SOURCES = $(COMMON_SOURCES) testh5repack_attr.c testh5repack_dset.c \
+        testh5repack_main.c testh5repack_make.c testh5repack_util.c
+
+
+testh5repack_detect_szip_SOURCES = testh5repack_detect_szip.c
+
+# Temporary files.  *.h5 are generated by h5repack.  They should
+# copied to the testfiles/ directory if update is required.
+MOSTLYCLEANFILES = *.h5
+DISTCLEANFILES = h5repack.sh
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
+# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and
+# EXTRA_TEST variables are supplied to allow the user to force targets to
+# be built at certain times. 
+LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
+      $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
+        $(EXTRA_PROG)
+
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+subdir = tools/h5repack
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES = h5repack.sh
+bin_PROGRAMS = h5repack$(EXEEXT)
+check_PROGRAMS = h5repacktst$(EXEEXT)
+noinst_PROGRAMS = testh5repack_detect_szip$(EXEEXT)
+PROGRAMS = $(bin_PROGRAMS) $(noinst_PROGRAMS)
+
+am__objects_1 = h5repack.$(OBJEXT) h5repack_copy.$(OBJEXT) \
+	h5repack_filters.$(OBJEXT) h5repack_list.$(OBJEXT) \
+	h5repack_opttable.$(OBJEXT) h5repack_parse.$(OBJEXT) \
+	h5repack_refs.$(OBJEXT) h5repack_verify.$(OBJEXT)
+am_h5repack_OBJECTS = $(am__objects_1) h5repack_main.$(OBJEXT)
+h5repack_OBJECTS = $(am_h5repack_OBJECTS)
+h5repack_LDADD = $(LDADD)
+h5repack_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+h5repack_LDFLAGS =
+am_h5repacktst_OBJECTS = $(am__objects_1) testh5repack_attr.$(OBJEXT) \
+	testh5repack_dset.$(OBJEXT) testh5repack_main.$(OBJEXT) \
+	testh5repack_make.$(OBJEXT) testh5repack_util.$(OBJEXT)
+h5repacktst_OBJECTS = $(am_h5repacktst_OBJECTS)
+h5repacktst_LDADD = $(LDADD)
+h5repacktst_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+h5repacktst_LDFLAGS =
+am_testh5repack_detect_szip_OBJECTS = testh5repack_detect_szip.$(OBJEXT)
+testh5repack_detect_szip_OBJECTS = \
+	$(am_testh5repack_detect_szip_OBJECTS)
+testh5repack_detect_szip_LDADD = $(LDADD)
+testh5repack_detect_szip_DEPENDENCIES = \
+	$(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+testh5repack_detect_szip_LDFLAGS =
+
+DEFS = @DEFS@
+DEFAULT_INCLUDES =  -I. -I$(srcdir) -I$(top_builddir)/src
+LDFLAGS = @LDFLAGS@
+LIBS = @LIBS@
+depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
+am__depfiles_maybe = depfiles
+@AMDEP_TRUE@DEP_FILES = ./$(DEPDIR)/h5repack.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/h5repack_copy.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/h5repack_filters.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/h5repack_list.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/h5repack_main.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/h5repack_opttable.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/h5repack_parse.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/h5repack_refs.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/h5repack_verify.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5repack_attr.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5repack_detect_szip.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5repack_dset.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5repack_main.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5repack_make.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/testh5repack_util.Po
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+CFLAGS = @CFLAGS@
+DIST_SOURCES = $(h5repack_SOURCES) $(h5repacktst_SOURCES) \
+	$(testh5repack_detect_szip_SOURCES)
+DIST_COMMON = Makefile.am Makefile.in h5repack.sh.in
+SOURCES = $(h5repack_SOURCES) $(h5repacktst_SOURCES) $(testh5repack_detect_szip_SOURCES)
+
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .o .obj
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  tools/h5repack/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+h5repack.sh: $(top_builddir)/config.status h5repack.sh.in
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+install-binPROGRAMS: $(bin_PROGRAMS)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  if test -f $$p \
+	     || test -f $$p1 \
+	  ; then \
+	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f"; \
+	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f; \
+	  else :; fi; \
+	done
+
+uninstall-binPROGRAMS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+	  echo " rm -f $(DESTDIR)$(bindir)/$$f"; \
+	  rm -f $(DESTDIR)$(bindir)/$$f; \
+	done
+
+clean-binPROGRAMS:
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+
+clean-checkPROGRAMS:
+	@list='$(check_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+
+clean-noinstPROGRAMS:
+	@list='$(noinst_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+h5repack$(EXEEXT): $(h5repack_OBJECTS) $(h5repack_DEPENDENCIES) 
+	@rm -f h5repack$(EXEEXT)
+	$(LINK) $(h5repack_LDFLAGS) $(h5repack_OBJECTS) $(h5repack_LDADD) $(LIBS)
+h5repacktst$(EXEEXT): $(h5repacktst_OBJECTS) $(h5repacktst_DEPENDENCIES) 
+	@rm -f h5repacktst$(EXEEXT)
+	$(LINK) $(h5repacktst_LDFLAGS) $(h5repacktst_OBJECTS) $(h5repacktst_LDADD) $(LIBS)
+testh5repack_detect_szip$(EXEEXT): $(testh5repack_detect_szip_OBJECTS) $(testh5repack_detect_szip_DEPENDENCIES) 
+	@rm -f testh5repack_detect_szip$(EXEEXT)
+	$(LINK) $(testh5repack_detect_szip_LDFLAGS) $(testh5repack_detect_szip_OBJECTS) $(testh5repack_detect_szip_LDADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT) core *.core
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_copy.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_filters.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_list.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_main.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_opttable.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_parse.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_refs.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_verify.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_attr.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_detect_szip.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_dset.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_main.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_make.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_util.Po@am__quote@
+
+distclean-depend:
+	-rm -rf ./$(DEPDIR)
+
+.c.o:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `test -f '$<' || echo '$(srcdir)/'`$<
+
+.c.obj:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `cygpath -w $<`
+
+.c.lo:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Plo' tmpdepfile='$(DEPDIR)/$*.TPlo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(LTCOMPILE) -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<
+CCDEPMODE = @CCDEPMODE@
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+
+ETAGS = etags
+ETAGSFLAGS =
+
+tags: TAGS
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(ETAGS_ARGS)$$tags$$unique" \
+	  || $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ../..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+	$(MAKE) $(AM_MAKEFLAGS) $(check_PROGRAMS) $(check_SCRIPTS)
+	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
+check: check-am
+all-am: Makefile $(PROGRAMS) all-local
+
+installdirs:
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+	-test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES)
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-test -z "$(DISTCLEANFILES)" || rm -f $(DISTCLEANFILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
+	clean-libtool clean-noinstPROGRAMS mostlyclean-am
+
+distclean: distclean-am
+
+distclean-am: clean-am distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-exec-am: install-binPROGRAMS
+
+install-info: install-info-am
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+uninstall-am: uninstall-binPROGRAMS uninstall-info-am
+
+.PHONY: GTAGS all all-am all-local check check-TESTS check-am clean \
+	clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
+	clean-libtool clean-noinstPROGRAMS distclean distclean-compile \
+	distclean-depend distclean-generic distclean-libtool \
+	distclean-tags distdir dvi dvi-am info info-am install \
+	install-am install-binPROGRAMS install-data install-data-am \
+	install-exec install-exec-am install-info install-info-am \
+	install-man install-strip installcheck installcheck-am \
+	installdirs maintainer-clean maintainer-clean-generic \
+	mostlyclean mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool tags uninstall uninstall-am \
+	uninstall-binPROGRAMS uninstall-info-am
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+lib progs tests ::
+	@$(MAKE) build-$@ || exit 1;                                          \
+	for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X -a $$d != .; then                                \
+	        (set -x; cd $$d && $(MAKE) $@) || exit 1;                     \
+	    fi;                                                               \
+	done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test: $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	   echo "===Tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+        fi
+	@for test in $(TEST_PROG) dummy; do                                  \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNTEST) ./$$test $(TEST_FLAGS) ||                         \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNPARALLEL) ./$$test $(TEST_FLAGS) ||                     \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@for test in $(TEST_SCRIPT) dummy; do                                \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	         srcdir="$(srcdir)"                                           \
+	         /bin/sh $$test $(TEST_FLAGS) ||                              \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	  fi;                                                                 \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	    echo "===Tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) check;                              \
+	    fi;                                                               \
+	done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/lib/Dependencies b/tools/lib/Dependencies
deleted file mode 100644
index d5ce66e..0000000
--- a/tools/lib/Dependencies
+++ /dev/null
@@ -1,612 +0,0 @@
-## This file is machine generated on GNU systems.
-## Only temporary changes may be made here.
-
-h5tools.lo: \
-   $(top_srcdir)/tools/lib/h5tools.c \
-   $(top_srcdir)/tools/lib/h5tools.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
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-   $(top_srcdir)/src/H5FSprivate.h
-h5tools_filters.lo: \
-   $(top_srcdir)/tools/lib/h5tools_filters.c \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
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-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
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-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
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-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/tools/lib/h5tools.h
-h5tools_ref.lo: \
-   $(top_srcdir)/tools/lib/h5tools_ref.c \
-   $(top_srcdir)/tools/lib/h5tools_ref.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
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-   $(top_srcdir)/src/H5MMpublic.h \
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-   $(top_srcdir)/src/H5FDcore.h \
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-   $(top_srcdir)/src/H5FDmpiposix.h \
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-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/tools/lib/h5tools.h \
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-h5tools_type.lo: \
-   $(top_srcdir)/tools/lib/h5tools_type.c \
-   $(top_srcdir)/tools/lib/h5tools.h \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
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-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
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-   $(top_srcdir)/src/H5FDfphdf5.h \
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-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h
-talign.lo: \
-   $(top_srcdir)/tools/lib/talign.c \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
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-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
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-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/tools/lib/h5tools.h
diff --git a/tools/lib/Makefile.am b/tools/lib/Makefile.am
new file mode 100644
index 0000000..0c34273
--- /dev/null
+++ b/tools/lib/Makefile.am
@@ -0,0 +1,44 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include files in /src directory
+AM_CFLAGS=-I$(top_srcdir)/src
+
+# This is our main target, the h5tools library.  We link this library
+# statically because some systems can only link executables to a single
+# shared library and libhdf5 is much bigger than libh5tools.
+noinst_LTLIBRARIES=libh5tools.la
+libh5tools_la_LDFLAGS=-static
+libh5tools_la_SOURCES=h5tools.c h5tools_str.c h5tools_utils.c h5diff.c \
+    h5diff_array.c h5diff_attr.c h5diff_dset.c h5diff_util.c h5trav.c  \
+    h5trav_table.c h5tools_filters.c h5tools_ref.c h5tools_type.c
+
+# Link the h5tools library using the main hdf5 library
+LIBADD=$(LIBHDF5)
+
+# Test program.  Link using libhdf5 and libh5tools
+TEST_PROG=talign
+check_PROGRAMS=$(TEST_PROG)
+
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+include $(top_srcdir)/config/conclude.am
+
diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in
index 0e382b9..56278ef 100644
--- a/tools/lib/Makefile.in
+++ b/tools/lib/Makefile.in
@@ -1,66 +1,715 @@
-##
-## Copyright by the Board of Trustees of the University of Illinois.
-## All rights reserved.
-##
-## This file is part of HDF5.  The full HDF5 copyright notice, including
-## terms governing use, modification, and redistribution, is contained in
-## the files COPYING and Copyright.html.  COPYING can be found at the root
-## of the source code distribution tree; Copyright.html can be found at the
-## root level of an installed copy of the electronic HDF5 document set and
-## is linked from the top-level documents page.  It can also be found at
-## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
-## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
-##
-## HDF5 Library Makefile(.in)
-##
-top_srcdir=@top_srcdir@
-top_builddir=../..
-srcdir=@srcdir@
-@COMMENCE@
-
-## Add include directory to the C preprocessor flags, add -lh5tools and
-## -lhdf5 to the list of libraries.
-##
-CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src  \
-         -I$(top_srcdir)/tools/lib @CPPFLAGS@
-
-## Test programs and scripts.
-##
-TEST_PROGS=talign
-TEST_SCRIPTS=
-
-## These are our main targets: library and tools. We link this library
-## statically because some systems can only link executables to a single
-## shared library and libhdf5 is much bigger than libh5tools.
-##
-LT_LINK_LIB=$(LT) --mode=link $(CC) -static -rpath $(libdir)
-LIB=libh5tools.la
-LIBHDF5=$(top_builddir)/src/libhdf5.la
-PUB_PROGS=
-PROGS=$(PUB_PROGS) $(TEST_PROGS)
-
-## Source and object files for the library; do not install
-##
-LIB_SRC=h5tools.c h5tools_str.c h5tools_utils.c h5diff.c h5diff_array.c h5diff_attr.c h5diff_dset.c h5diff_util.c h5trav.c h5trav_table.c h5tools_filters.c h5tools_ref.c h5tools_type.c
-LIB_OBJ=$(LIB_SRC:.c=.lo)
-PUB_LIB=
-AUX_LIB=$(LIB)
-
-TEST_SRC=talign.c
-TEST_OBJ=$(TEST_SRC:.c=.lo)
-
-PRIVATE_HDR=h5tools.h h5tools_str.h h5diff.h h5trav.h
-
-## Programs have to be built before they can be tested!
-##
-check test _test: $(PROGS)
-
-## How to build the programs... They all depend on the hdf5 library and
-## the tools library compiled in this directory.
-##
-$(PROGS): $(LIB) $(LIBHDF5)
-
-talign: talign.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ talign.lo $(LIB) $(LIBHDF5) $(LDFLAGS) $(LIBS)
-
-@CONCLUDE@
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
+
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# HDF5 Library Makefile(.in)
+#
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/conclude' file which was generated with config.status
+# from `./config/conclude.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
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+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
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+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
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+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
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+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
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+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+F77 = @F77@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
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+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
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+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+# Include files in /src directory
+AM_CFLAGS = -I$(top_srcdir)/src
+
+# This is our main target, the h5tools library.  We link this library
+# statically because some systems can only link executables to a single
+# shared library and libhdf5 is much bigger than libh5tools.
+noinst_LTLIBRARIES = libh5tools.la
+libh5tools_la_LDFLAGS = -static
+libh5tools_la_SOURCES = h5tools.c h5tools_str.c h5tools_utils.c h5diff.c \
+    h5diff_array.c h5diff_attr.c h5diff_dset.c h5diff_util.c h5trav.c  \
+    h5trav_table.c h5tools_filters.c h5tools_ref.c h5tools_type.c
+
+
+# Link the h5tools library using the main hdf5 library
+LIBADD = $(LIBHDF5)
+
+# Test program.  Link using libhdf5 and libh5tools
+TEST_PROG = talign
+check_PROGRAMS = $(TEST_PROG)
+
+LDADD = $(LIBH5TOOLS) $(LIBHDF5)
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
+# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and
+# EXTRA_TEST variables are supplied to allow the user to force targets to
+# be built at certain times. 
+LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
+      $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
+        $(EXTRA_PROG)
+
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+subdir = tools/lib
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES =
+LTLIBRARIES = $(noinst_LTLIBRARIES)
+
+libh5tools_la_LIBADD =
+am_libh5tools_la_OBJECTS = h5tools.lo h5tools_str.lo h5tools_utils.lo \
+	h5diff.lo h5diff_array.lo h5diff_attr.lo h5diff_dset.lo \
+	h5diff_util.lo h5trav.lo h5trav_table.lo h5tools_filters.lo \
+	h5tools_ref.lo h5tools_type.lo
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+talign_SOURCES = talign.c
+talign_OBJECTS = talign.$(OBJEXT)
+talign_LDADD = $(LDADD)
+talign_DEPENDENCIES = $(top_builddir)/tools/lib/libh5tools.la \
+	$(top_builddir)/src/libhdf5.la
+talign_LDFLAGS =
+
+DEFS = @DEFS@
+DEFAULT_INCLUDES =  -I. -I$(srcdir) -I$(top_builddir)/src
+LDFLAGS = @LDFLAGS@
+LIBS = @LIBS@
+depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
+am__depfiles_maybe = depfiles
+@AMDEP_TRUE@DEP_FILES = ./$(DEPDIR)/h5diff.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/h5diff_array.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/h5diff_attr.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/h5diff_dset.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/h5diff_util.Plo ./$(DEPDIR)/h5tools.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/h5tools_filters.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/h5tools_ref.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/h5tools_str.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/h5tools_type.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/h5tools_utils.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/h5trav.Plo ./$(DEPDIR)/h5trav_table.Plo \
+@AMDEP_TRUE@	./$(DEPDIR)/talign.Po
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+CFLAGS = @CFLAGS@
+DIST_SOURCES = $(libh5tools_la_SOURCES) talign.c
+DIST_COMMON = Makefile.am Makefile.in
+SOURCES = $(libh5tools_la_SOURCES) talign.c
+
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .o .obj
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  tools/lib/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+
+clean-noinstLTLIBRARIES:
+	-test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES)
+	@list='$(noinst_LTLIBRARIES)'; for p in $$list; do \
+	  dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \
+	  test -z "$dir" && dir=.; \
+	  echo "rm -f \"$${dir}/so_locations\""; \
+	  rm -f "$${dir}/so_locations"; \
+	done
+libh5tools.la: $(libh5tools_la_OBJECTS) $(libh5tools_la_DEPENDENCIES) 
+	$(LINK)  $(libh5tools_la_LDFLAGS) $(libh5tools_la_OBJECTS) $(libh5tools_la_LIBADD) $(LIBS)
+
+clean-checkPROGRAMS:
+	@list='$(check_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+talign$(EXEEXT): $(talign_OBJECTS) $(talign_DEPENDENCIES) 
+	@rm -f talign$(EXEEXT)
+	$(LINK) $(talign_LDFLAGS) $(talign_OBJECTS) $(talign_LDADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT) core *.core
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5diff.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5diff_array.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5diff_attr.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5diff_dset.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5diff_util.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5tools.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5tools_filters.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5tools_ref.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5tools_str.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5tools_type.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5tools_utils.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5trav.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5trav_table.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/talign.Po@am__quote@
+
+distclean-depend:
+	-rm -rf ./$(DEPDIR)
+
+.c.o:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `test -f '$<' || echo '$(srcdir)/'`$<
+
+.c.obj:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `cygpath -w $<`
+
+.c.lo:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Plo' tmpdepfile='$(DEPDIR)/$*.TPlo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(LTCOMPILE) -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<
+CCDEPMODE = @CCDEPMODE@
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+
+ETAGS = etags
+ETAGSFLAGS =
+
+tags: TAGS
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(ETAGS_ARGS)$$tags$$unique" \
+	  || $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ../..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+	$(MAKE) $(AM_MAKEFLAGS) $(check_PROGRAMS)
+	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
+check: check-am
+all-am: Makefile $(LTLIBRARIES) all-local
+
+installdirs:
+
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-checkPROGRAMS clean-generic clean-libtool \
+	clean-noinstLTLIBRARIES mostlyclean-am
+
+distclean: distclean-am
+
+distclean-am: clean-am distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-exec-am:
+
+install-info: install-info-am
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+uninstall-am: uninstall-info-am
+
+.PHONY: GTAGS all all-am all-local check check-TESTS check-am clean \
+	clean-checkPROGRAMS clean-generic clean-libtool \
+	clean-noinstLTLIBRARIES distclean distclean-compile \
+	distclean-depend distclean-generic distclean-libtool \
+	distclean-tags distdir dvi dvi-am info info-am install \
+	install-am install-data install-data-am install-exec \
+	install-exec-am install-info install-info-am install-man \
+	install-strip installcheck installcheck-am installdirs \
+	maintainer-clean maintainer-clean-generic mostlyclean \
+	mostlyclean-compile mostlyclean-generic mostlyclean-libtool \
+	tags uninstall uninstall-am uninstall-info-am
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+lib progs tests ::
+	@$(MAKE) build-$@ || exit 1;                                          \
+	for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X -a $$d != .; then                                \
+	        (set -x; cd $$d && $(MAKE) $@) || exit 1;                     \
+	    fi;                                                               \
+	done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test: $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	   echo "===Tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+        fi
+	@for test in $(TEST_PROG) dummy; do                                  \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNTEST) ./$$test $(TEST_FLAGS) ||                         \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNPARALLEL) ./$$test $(TEST_FLAGS) ||                     \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@for test in $(TEST_SCRIPT) dummy; do                                \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	         srcdir="$(srcdir)"                                           \
+	         /bin/sh $$test $(TEST_FLAGS) ||                              \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	  fi;                                                                 \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	    echo "===Tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) check;                              \
+	    fi;                                                               \
+	done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/misc/Dependencies b/tools/misc/Dependencies
deleted file mode 100644
index 3abc7ef..0000000
--- a/tools/misc/Dependencies
+++ /dev/null
@@ -1,135 +0,0 @@
-## This file is machine generated on GNU systems.
-## Only temporary changes may be made here.
-
-h5debug.lo: \
-   $(top_srcdir)/tools/misc/h5debug.c \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h \
-   $(top_srcdir)/src/H5Bprivate.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5ACprivate.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Fprivate.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5Cprivate.h \
-   $(top_srcdir)/src/H5Cpublic.h \
-   $(top_srcdir)/src/H5RCprivate.h \
-   $(top_srcdir)/src/H5Dprivate.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5FDprivate.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5Oprivate.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5HGprivate.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5Tprivate.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Gprivate.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5RSprivate.h \
-   $(top_srcdir)/src/H5Rprivate.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Zprivate.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Fpkg.h \
-   $(top_srcdir)/src/H5FOprivate.h \
-   $(top_srcdir)/src/H5SLprivate.h \
-   $(top_srcdir)/src/H5HLprivate.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5Iprivate.h \
-   $(top_srcdir)/src/H5Opkg.h \
-   $(top_srcdir)/src/H5Pprivate.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5FDfamily.h
-h5repart.lo: \
-   $(top_srcdir)/tools/misc/h5repart.c \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h \
-   $(top_srcdir)/src/H5private.h \
-   $(top_srcdir)/src/H5MPprivate.h \
-   $(top_srcdir)/src/H5FSprivate.h
-pdb2hdf.lo: \
-   $(top_srcdir)/tools/misc/pdb2hdf.c \
-   $(top_srcdir)/src/hdf5.h \
-   $(top_srcdir)/src/H5public.h \
-   $(top_builddir)/src/H5pubconf.h \
-   $(top_srcdir)/src/H5api_adpt.h \
-   $(top_srcdir)/src/H5Apublic.h \
-   $(top_srcdir)/src/H5Ipublic.h \
-   $(top_srcdir)/src/H5ACpublic.h \
-   $(top_srcdir)/src/H5Bpublic.h \
-   $(top_srcdir)/src/H5Dpublic.h \
-   $(top_srcdir)/src/H5Epublic.h \
-   $(top_srcdir)/src/H5Epubgen.h \
-   $(top_srcdir)/src/H5Fpublic.h \
-   $(top_srcdir)/src/H5FDpublic.h \
-   $(top_srcdir)/src/H5FPpublic.h \
-   $(top_srcdir)/src/H5Gpublic.h \
-   $(top_srcdir)/src/H5Opublic.h \
-   $(top_srcdir)/src/H5HGpublic.h \
-   $(top_srcdir)/src/H5HLpublic.h \
-   $(top_srcdir)/src/H5MMpublic.h \
-   $(top_srcdir)/src/H5Ppublic.h \
-   $(top_srcdir)/src/H5Tpublic.h \
-   $(top_srcdir)/src/H5Zpublic.h \
-   $(top_srcdir)/src/H5Rpublic.h \
-   $(top_srcdir)/src/H5Spublic.h \
-   $(top_srcdir)/src/H5FDcore.h \
-   $(top_srcdir)/src/H5FDfamily.h \
-   $(top_srcdir)/src/H5FDgass.h \
-   $(top_srcdir)/src/H5FDlog.h \
-   $(top_srcdir)/src/H5FDmpi.h \
-   $(top_srcdir)/src/H5FDfphdf5.h \
-   $(top_srcdir)/src/H5FDmpio.h \
-   $(top_srcdir)/src/H5FDmpiposix.h \
-   $(top_srcdir)/src/H5FDmulti.h \
-   $(top_srcdir)/src/H5FDsec2.h \
-   $(top_srcdir)/src/H5FDsrb.h \
-   $(top_srcdir)/src/H5FDstdio.h \
-   $(top_srcdir)/src/H5FDstream.h
diff --git a/tools/misc/Makefile.am b/tools/misc/Makefile.am
new file mode 100644
index 0000000..52ee9df
--- /dev/null
+++ b/tools/misc/Makefile.am
@@ -0,0 +1,60 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src directory
+AM_CFLAGS=-I$(top_srcdir)/src
+
+# Build pdb2hdf5 if LLNL's PDB is present (checked in configure)
+if BUILD_PDB2HDF_CONDITIONAL
+   PDB2HDF=pdb2hdf5
+endif
+
+# These are our main targets, the tools
+bin_PROGRAMS=h5debug h5repart $(PDB2HDF)
+bin_SCRIPTS=h5redeploy
+
+# Tell automake to clean h5redeploy script
+CLEANFILES=h5redeploy
+
+# h5cc is generated by configure.  Remove it only when distclean.
+DISTCLEANFILES=h5cc
+
+# All programs rely on hdf5 library and h5tools library
+LDADD=$(LIBHDF5) $(LIBH5TOOLS)
+
+# h5cc needs custom install and uninstall rules, since it may be
+# named h5pcc if hdf5 is being built in parallel mode.
+if BUILD_PARALLEL_CONDITIONAL
+  H5CC_NAME=h5pcc
+else
+  H5CC_NAME=h5cc
+endif
+
+install-exec-local:
+	$(INSTALL) h5cc $(bindir)/$(H5CC_NAME)
+uninstall-local:
+	$(RM) $(bindir)/$(H5CC_NAME)
+
+# How to build h5redeploy script
+h5redeploy: h5redeploy.in
+	cp $(srcdir)/$@.in $@
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in
index 11a1806..f6387a4 100644
--- a/tools/misc/Makefile.in
+++ b/tools/misc/Makefile.in
@@ -1,85 +1,761 @@
-##
-## Copyright by the Board of Trustees of the University of Illinois.
-## All rights reserved.
-##
-## This file is part of HDF5.  The full HDF5 copyright notice, including
-## terms governing use, modification, and redistribution, is contained in
-## the files COPYING and Copyright.html.  COPYING can be found at the root
-## of the source code distribution tree; Copyright.html can be found at the
-## root level of an installed copy of the electronic HDF5 document set and
-## is linked from the top-level documents page.  It can also be found at
-## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
-## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
-##
-## HDF5 Library Makefile(.in)
-## 
-top_srcdir=@top_srcdir@
-top_builddir=../..
-srcdir=@srcdir@
-@COMMENCE@
-
-## Add include directory to the C preprocessor flags, add -lh5tools and
-## -lhdf5 to the list of libraries.
-##
-CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src  \
-         -I$(top_srcdir)/tools/lib @CPPFLAGS@
-
-## Test programs and scripts.
-##
-TEST_PROGS=
-TEST_SCRIPTS=
-
-## These are our main targets: library and tools.
-##
-LIBTOOLS=../lib/libh5tools.la
-LIBHDF5=$(top_builddir)/src/libhdf5.la
-
-## h5cc is generated by configure.  Remove it only when distclean.
-BUILD_PROGS=h5debug h5redeploy h5repart @PDB2HDF@
-PUB_PROGS=h5cc $(BUILD_PROGS)
-PROGS=$(BUILD_PROGS) $(TEST_PROGS)
-DISTCLEAN=h5cc
-
-## Source and object files for the library; do not install
-##
-LIB_SRC=
-LIB_OBJ=$(LIB_SRC:.c=.lo)
-PUB_LIB=
-
-## Source and object files for programs...
-##
-PROG_SRC=h5debug.c h5repart.c pdb2hdf.c
-PROG_OBJ=$(PROG_SRC:.c=.lo)
-
-PRIVATE_HDR=
-
-## Source and object files for the tests
-##
-TEST_SRC=
-TEST_OBJ=$(TEST_SRC:.c=.lo)
-
-## Programs have to be built before they can be tested!
-##
-check test _test: $(PROGS)
-
-## How to build the programs...They all depend on the hdf5 library and
-## the tools library compiled in this directory.
-##
-$(PROGS): $(LIBTOOLS) $(LIBHDF5)
-
-h5cc: h5cc.in
-	@true
-
-h5debug: h5debug.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5debug.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
 
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# HDF5 Library Makefile(.in)
+#
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/conclude' file which was generated with config.status
+# from `./config/conclude.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_DATA = @INSTALL_DATA@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+F77 = @F77@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+# Include src directory
+AM_CFLAGS = -I$(top_srcdir)/src
+
+# Build pdb2hdf5 if LLNL's PDB is present (checked in configure)
+@BUILD_PDB2HDF_CONDITIONAL_TRUE@PDB2HDF = pdb2hdf5
+
+# These are our main targets, the tools
+bin_PROGRAMS = h5debug h5repart $(PDB2HDF)
+bin_SCRIPTS = h5redeploy
+
+# Tell automake to clean h5redeploy script
+CLEANFILES = h5redeploy
+
+# h5cc is generated by configure.  Remove it only when distclean.
+DISTCLEANFILES = h5cc
+
+# All programs rely on hdf5 library and h5tools library
+LDADD = $(LIBHDF5) $(LIBH5TOOLS)
+
+# h5cc needs custom install and uninstall rules, since it may be
+# named h5pcc if hdf5 is being built in parallel mode.
+@BUILD_PARALLEL_CONDITIONAL_TRUE@H5CC_NAME = h5pcc
+@BUILD_PARALLEL_CONDITIONAL_FALSE@H5CC_NAME = h5cc
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
+# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and
+# EXTRA_TEST variables are supplied to allow the user to force targets to
+# be built at certain times. 
+LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
+      $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
+        $(EXTRA_PROG)
+
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+subdir = tools/misc
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES = h5cc
+@BUILD_PDB2HDF_CONDITIONAL_TRUE@bin_PROGRAMS = h5debug$(EXEEXT) \
+@BUILD_PDB2HDF_CONDITIONAL_TRUE@	h5repart$(EXEEXT) \
+@BUILD_PDB2HDF_CONDITIONAL_TRUE@	pdb2hdf5$(EXEEXT)
+@BUILD_PDB2HDF_CONDITIONAL_FALSE@bin_PROGRAMS = h5debug$(EXEEXT) \
+@BUILD_PDB2HDF_CONDITIONAL_FALSE@	h5repart$(EXEEXT)
+PROGRAMS = $(bin_PROGRAMS)
+
+h5debug_SOURCES = h5debug.c
+h5debug_OBJECTS = h5debug.$(OBJEXT)
+h5debug_LDADD = $(LDADD)
+h5debug_DEPENDENCIES = $(top_builddir)/src/libhdf5.la \
+	$(top_builddir)/tools/lib/libh5tools.la
+h5debug_LDFLAGS =
+h5repart_SOURCES = h5repart.c
+h5repart_OBJECTS = h5repart.$(OBJEXT)
+h5repart_LDADD = $(LDADD)
+h5repart_DEPENDENCIES = $(top_builddir)/src/libhdf5.la \
+	$(top_builddir)/tools/lib/libh5tools.la
+h5repart_LDFLAGS =
+pdb2hdf5_SOURCES = pdb2hdf5.c
+pdb2hdf5_OBJECTS = pdb2hdf5.$(OBJEXT)
+pdb2hdf5_LDADD = $(LDADD)
+pdb2hdf5_DEPENDENCIES = $(top_builddir)/src/libhdf5.la \
+	$(top_builddir)/tools/lib/libh5tools.la
+pdb2hdf5_LDFLAGS =
+SCRIPTS = $(bin_SCRIPTS)
+
+
+DEFS = @DEFS@
+DEFAULT_INCLUDES =  -I. -I$(srcdir) -I$(top_builddir)/src
+LDFLAGS = @LDFLAGS@
+LIBS = @LIBS@
+depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
+am__depfiles_maybe = depfiles
+@AMDEP_TRUE@DEP_FILES = ./$(DEPDIR)/h5debug.Po ./$(DEPDIR)/h5repart.Po \
+@AMDEP_TRUE@	./$(DEPDIR)/pdb2hdf5.Po
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+CFLAGS = @CFLAGS@
+DIST_SOURCES = h5debug.c h5repart.c pdb2hdf5.c
+DIST_COMMON = Makefile.am Makefile.in h5cc.in
+SOURCES = h5debug.c h5repart.c pdb2hdf5.c
+
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .o .obj
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  tools/misc/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+h5cc: $(top_builddir)/config.status h5cc.in
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+install-binPROGRAMS: $(bin_PROGRAMS)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  if test -f $$p \
+	     || test -f $$p1 \
+	  ; then \
+	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f"; \
+	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) $$p $(DESTDIR)$(bindir)/$$f; \
+	  else :; fi; \
+	done
+
+uninstall-binPROGRAMS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+	  echo " rm -f $(DESTDIR)$(bindir)/$$f"; \
+	  rm -f $(DESTDIR)$(bindir)/$$f; \
+	done
+
+clean-binPROGRAMS:
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+h5debug$(EXEEXT): $(h5debug_OBJECTS) $(h5debug_DEPENDENCIES) 
+	@rm -f h5debug$(EXEEXT)
+	$(LINK) $(h5debug_LDFLAGS) $(h5debug_OBJECTS) $(h5debug_LDADD) $(LIBS)
+h5repart$(EXEEXT): $(h5repart_OBJECTS) $(h5repart_DEPENDENCIES) 
+	@rm -f h5repart$(EXEEXT)
+	$(LINK) $(h5repart_LDFLAGS) $(h5repart_OBJECTS) $(h5repart_LDADD) $(LIBS)
+pdb2hdf5$(EXEEXT): $(pdb2hdf5_OBJECTS) $(pdb2hdf5_DEPENDENCIES) 
+	@rm -f pdb2hdf5$(EXEEXT)
+	$(LINK) $(pdb2hdf5_LDFLAGS) $(pdb2hdf5_OBJECTS) $(pdb2hdf5_LDADD) $(LIBS)
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(bindir)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) $$d$$p $(DESTDIR)$(bindir)/$$f"; \
+	    $(binSCRIPT_INSTALL) $$d$$p $(DESTDIR)$(bindir)/$$f; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f $(DESTDIR)$(bindir)/$$f"; \
+	  rm -f $(DESTDIR)$(bindir)/$$f; \
+	done
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT) core *.core
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5debug.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repart.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/pdb2hdf5.Po@am__quote@
+
+distclean-depend:
+	-rm -rf ./$(DEPDIR)
+
+.c.o:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `test -f '$<' || echo '$(srcdir)/'`$<
+
+.c.obj:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Po' tmpdepfile='$(DEPDIR)/$*.TPo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(COMPILE) -c `cygpath -w $<`
+
+.c.lo:
+@AMDEP_TRUE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+@AMDEP_TRUE@	depfile='$(DEPDIR)/$*.Plo' tmpdepfile='$(DEPDIR)/$*.TPlo' @AMDEPBACKSLASH@
+@AMDEP_TRUE@	$(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+	$(LTCOMPILE) -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<
+CCDEPMODE = @CCDEPMODE@
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+
+ETAGS = etags
+ETAGSFLAGS =
+
+tags: TAGS
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(ETAGS_ARGS)$$tags$$unique" \
+	  || $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ../..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
+check: check-am
+all-am: Makefile $(PROGRAMS) $(SCRIPTS) all-local
+
+installdirs:
+	$(mkinstalldirs) $(DESTDIR)$(bindir) $(DESTDIR)$(bindir)
+
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+	-test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-test -z "$(DISTCLEANFILES)" || rm -f $(DISTCLEANFILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-am
+
+distclean-am: clean-am distclean-compile distclean-depend \
+	distclean-generic distclean-libtool distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-exec-am: install-binPROGRAMS install-binSCRIPTS \
+	install-exec-local
+
+install-info: install-info-am
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS \
+	uninstall-info-am uninstall-local
+
+.PHONY: GTAGS all all-am all-local check check-TESTS check-am clean \
+	clean-binPROGRAMS clean-generic clean-libtool distclean \
+	distclean-compile distclean-depend distclean-generic \
+	distclean-libtool distclean-tags distdir dvi dvi-am info \
+	info-am install install-am install-binPROGRAMS \
+	install-binSCRIPTS install-data install-data-am install-exec \
+	install-exec-am install-exec-local install-info install-info-am \
+	install-man install-strip installcheck installcheck-am \
+	installdirs maintainer-clean maintainer-clean-generic \
+	mostlyclean mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool tags uninstall uninstall-am \
+	uninstall-binPROGRAMS uninstall-binSCRIPTS uninstall-info-am \
+	uninstall-local
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+install-exec-local:
+	$(INSTALL) h5cc $(bindir)/$(H5CC_NAME)
+uninstall-local:
+	$(RM) $(bindir)/$(H5CC_NAME)
+
+# How to build h5redeploy script
 h5redeploy: h5redeploy.in
-	$(CP) $(srcdir)/$@.in $@
+	cp $(srcdir)/$@.in $@
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+lib progs tests ::
+	@$(MAKE) build-$@ || exit 1;                                          \
+	for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X -a $$d != .; then                                \
+	        (set -x; cd $$d && $(MAKE) $@) || exit 1;                     \
+	    fi;                                                               \
+	done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
 
-h5repart: h5repart.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5repart.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
 
-pdb2hdf: pdb2hdf.lo
-	@$(LT_LINK_EXE) $(CFLAGS) -o $@ pdb2hdf.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
+test _test: $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	   echo "===Tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+        fi
+	@for test in $(TEST_PROG) dummy; do                                  \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNTEST) ./$$test $(TEST_FLAGS) ||                         \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      srcdir="$(srcdir)"                                              \
+	         $(RUNPARALLEL) ./$$test $(TEST_FLAGS) ||                     \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	   fi;                                                                \
+	done;                                                                 \
+	test $$test = dummy || false
+	@for test in $(TEST_SCRIPT) dummy; do                                \
+	   if test $$test != dummy; then                                      \
+	      echo "============================";                            \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then                        \
+	         echo "Fortran API: Testing $$test $(TEST_FLAGS)";            \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then                          \
+	         echo "C++ API: Testing $$test $(TEST_FLAGS)";                \
+	      else                                                            \
+	         echo "Testing $$test $(TEST_FLAGS)";                         \
+	      fi;                                                             \
+	      echo "============================";                            \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	         srcdir="$(srcdir)"                                           \
+	         /bin/sh $$test $(TEST_FLAGS) ||                              \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||     \
+	         break;                                                       \
+	      echo "";                                                        \
+	  fi;                                                                 \
+	done;                                                                 \
+	test $$test = dummy || false
+	@if test -n "$(TEST_PROG)$(TEST_PROG_PARA)$(TEST_SCRIPT)"; then      \
+	    echo "===Tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
 
-@CONCLUDE@
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) check;                              \
+	    fi;                                                               \
+	done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT: