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authorMohamad Chaarawi <chaarawi@hdfgroup.org>2016-01-20 15:30:55 (GMT)
committerMohamad Chaarawi <chaarawi@hdfgroup.org>2016-01-20 15:30:55 (GMT)
commitafd696593b786db4c68d7ad0235da145ba250568 (patch)
treeb5ebfef14196fa2b002b7bfea6cf24944659613d /tools
parentf6429a3f5483100f08b40eb1d06daacc012313cb (diff)
parentb9763eee6dd6a81d2696faf430e0cf7f27281462 (diff)
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[svn-r28933] merge from trunk.
Diffstat (limited to 'tools')
-rw-r--r--tools/h5dump/CMakeTests.cmake39
-rw-r--r--tools/h5dump/errfiles/non_existing.err1
-rw-r--r--tools/h5dump/errfiles/tdset-2.err2
-rw-r--r--tools/h5dump/errfiles/tperror.err2
-rw-r--r--tools/h5dump/h5dump.c64
-rw-r--r--tools/h5dump/h5dumpgentest.c24
-rw-r--r--tools/h5dump/testh5dump.sh.in65
-rw-r--r--tools/h5ls/h5ls.c5
-rw-r--r--tools/h5repack/h5repacktst.c2
-rw-r--r--tools/lib/h5tools_dump.c3
-rw-r--r--tools/misc/h5debug.c4
-rw-r--r--tools/testfiles/non_existing.ddl31
12 files changed, 143 insertions, 99 deletions
diff --git a/tools/h5dump/CMakeTests.cmake b/tools/h5dump/CMakeTests.cmake
index 00ec760..c256e11 100644
--- a/tools/h5dump/CMakeTests.cmake
+++ b/tools/h5dump/CMakeTests.cmake
@@ -4,7 +4,7 @@
### T E S T I N G ###
##############################################################################
##############################################################################
-
+
# --------------------------------------------------------------------
# Copy all the HDF5 files from the test directory into the source directory
# --------------------------------------------------------------------
@@ -12,6 +12,7 @@
${HDF5_TOOLS_SRC_DIR}/testfiles/charsets.ddl
${HDF5_TOOLS_SRC_DIR}/testfiles/file_space.ddl
${HDF5_TOOLS_SRC_DIR}/testfiles/filter_fail.ddl
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/non_existing.ddl
${HDF5_TOOLS_SRC_DIR}/testfiles/packedbits.ddl
${HDF5_TOOLS_SRC_DIR}/testfiles/tall-1.ddl
${HDF5_TOOLS_SRC_DIR}/testfiles/tall-2.ddl
@@ -284,6 +285,7 @@
)
set (HDF5_ERROR_REFERENCE_TEST_FILES
${PROJECT_SOURCE_DIR}/errfiles/filter_fail.err
+ ${PROJECT_SOURCE_DIR}/errfiles/non_existing.err
${PROJECT_SOURCE_DIR}/errfiles/tall-1.err
${PROJECT_SOURCE_DIR}/errfiles/tall-2A.err
${PROJECT_SOURCE_DIR}/errfiles/tall-2A0.err
@@ -325,7 +327,7 @@
ARGS -E copy_if_different ${tst_h5_file} ${dest}
)
endforeach (tst_h5_file ${HDF5_REFERENCE_TEST_FILES})
-
+
foreach (tst_exp_file ${HDF5_REFERENCE_EXP_FILES})
if (WIN32)
file (READ ${HDF5_TOOLS_SRC_DIR}/testfiles/${tst_exp_file} TEST_STREAM)
@@ -373,7 +375,7 @@
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different ${HDF5_TOOLS_SOURCE_DIR}/testfiles/tbin1.ddl ${PROJECT_BINARY_DIR}/testfiles/std/tbin1LE.ddl
)
-
+
if (WIN32)
file (READ ${HDF5_TOOLS_SRC_DIR}/testfiles/tbinregR.exp TEST_STREAM)
file (WRITE ${PROJECT_BINARY_DIR}/testfiles/std/tbinregR.exp "${TEST_STREAM}")
@@ -385,7 +387,7 @@
ARGS -E copy_if_different ${HDF5_TOOLS_SRC_DIR}/testfiles/tbinregR.exp ${PROJECT_BINARY_DIR}/testfiles/std/tbinregR.exp
)
endif (WIN32)
-
+
##############################################################################
##############################################################################
### T H E T E S T S M A C R O S ###
@@ -730,7 +732,7 @@
add_test (
NAME H5DUMP-clearall-objects
COMMAND ${CMAKE_COMMAND}
- -E remove
+ -E remove
h5dump-help.out
charsets.out
charsets.out.err
@@ -738,6 +740,8 @@
file_space.out.err
filter_fail.out
filter_fail.out.err
+ non_existing.out
+ non_existing.out.err
packedbits.out
packedbits.out.err
tall-1.out
@@ -1075,9 +1079,9 @@
ADD_H5_TEST_EXPORT (trawdatafile packedbits.h5 0 --enable-error-stack -y -o)
ADD_H5_TEST_EXPORT (tnoddlfile packedbits.h5 0 --enable-error-stack -O -y -o)
ADD_H5_TEST_EXPORT (trawssetfile tdset.h5 0 --enable-error-stack -d "/dset1[1,1;;;]" -y -o)
-
+
ADD_H5_TEST_EXPORT_DDL (twithddlfile packedbits.h5 0 twithddl --enable-error-stack --ddl=twithddl.txt -y -o)
-
+
# test for maximum display datasets
ADD_H5_TEST (twidedisplay 0 --enable-error-stack -w0 packedbits.h5)
@@ -1147,7 +1151,7 @@
# test for named data types
ADD_H5_TEST (tcomp-2 0 --enable-error-stack -t /type1 --datatype /type2 --datatype=/group1/type3 tcompound.h5)
ADD_H5_TEST_N (tcomp-2 0 --enable-error-stack -N /type1 --any_path /type2 --any_path=/group1/type3 tcompound.h5)
- # test for unamed type
+ # test for unamed type
ADD_H5ERR_MASK_TEST (tcomp-3 0 "--enable-error-stack;-t;/#6632;-g;/group2;tcompound.h5")
# test complicated compound datatype
ADD_H5_TEST (tcomp-4 0 --enable-error-stack tcompound_complex.h5)
@@ -1169,7 +1173,7 @@
# test for loop detection
ADD_H5_TEST (tloop-1 0 --enable-error-stack tloop.h5)
- # test for string
+ # test for string
ADD_H5_TEST (tstr-1 0 --enable-error-stack tstr.h5)
ADD_H5_TEST (tstr-2 0 --enable-error-stack tstr2.h5)
@@ -1202,7 +1206,7 @@
#ADD_H5_MASK_TEST (tstarfile 0 --enable-error-stack -H -d Dataset1 tarr*.h5)
#ADD_H5_MASK_TEST (tqmarkfile 0 --enable-error-stack -H -d Dataset1 tarray?.h5)
ADD_H5_TEST (tmultifile 0 --enable-error-stack -H -d Dataset1 tarray2.h5 tarray3.h5 tarray4.h5 tarray5.h5 tarray6.h5 tarray7.h5)
-
+
# test for files with empty data
ADD_H5_TEST (tempty 0 --enable-error-stack tempty.h5)
@@ -1263,7 +1267,7 @@
ADD_H5_TEST (tcontiguos 0 --enable-error-stack -H -p -d contiguous tfilters.h5)
# chunked
ADD_H5_TEST (tchunked 0 --enable-error-stack -H -p -d chunked tfilters.h5)
- # external
+ # external
ADD_H5_TEST (texternal 0 --enable-error-stack -H -p -d external tfilters.h5)
# fill values
@@ -1331,7 +1335,7 @@
# don't have). Do this by searching H5pubconf.h to see which
# filters are defined.
-# detect whether the encoder is present.
+# detect whether the encoder is present.
if (H5_HAVE_FILTER_DEFLATE)
set (USE_FILTER_DEFLATE "true")
endif (H5_HAVE_FILTER_DEFLATE)
@@ -1352,12 +1356,12 @@
# test for displaying objects with very long names
ADD_H5_TEST (tlonglinks 0 --enable-error-stack tlonglinks.h5)
- # dimensions over 4GB, print boundary
+ # dimensions over 4GB, print boundary
ADD_H5_TEST (tbigdims 0 --enable-error-stack -d dset4gb -s 4294967284 -c 22 tbigdims.h5)
# hyperslab read
ADD_H5_TEST (thyperslab 0 --enable-error-stack thyperslab.h5)
-
+
# test for displaying dataset and attribute of null space
ADD_H5_TEST (tnullspace 0 --enable-error-stack tnullspace.h5)
@@ -1391,7 +1395,7 @@
ADD_H5_TEST (tbin4 0 --enable-error-stack -d double -b FILE -o tbin4.bin tbinary.h5)
endif (NOT HDF5_ENABLE_USING_MEMCHECKER)
- # test for dataset region references
+ # test for dataset region references
ADD_H5_TEST (tdatareg 0 --enable-error-stack tdatareg.h5)
ADD_H5ERR_MASK_TEST (tdataregR 0 --enable-error-stack -R tdatareg.h5)
ADD_H5ERR_MASK_TEST (tattrregR 0 -R --enable-error-stack tattrreg.h5)
@@ -1414,7 +1418,7 @@
# tests for link references and order
ADD_H5ERR_MASK_TEST (torderlinks1 0 --enable-error-stack --sort_by=name --sort_order=ascending tfcontents1.h5)
ADD_H5ERR_MASK_TEST (torderlinks2 0 --enable-error-stack --sort_by=name --sort_order=descending tfcontents1.h5)
-
+
# tests for floating point user defined printf format
ADD_H5_TEST (tfpformat 0 --enable-error-stack -m %.7f tfpformat.h5)
@@ -1430,3 +1434,6 @@
# test for -o -y for dataset with attributes
ADD_H5_TEST_EXPORT (tall-6 tall.h5 0 --enable-error-stack -d /g1/g1.1/dset1.1.1 -y -o)
+
+ # test for non-existing file
+ ADD_H5_TEST (non_existing 1 --enable-error-stack tgroup.h5 non_existing.h5)
diff --git a/tools/h5dump/errfiles/non_existing.err b/tools/h5dump/errfiles/non_existing.err
new file mode 100644
index 0000000..f7e3afa
--- /dev/null
+++ b/tools/h5dump/errfiles/non_existing.err
@@ -0,0 +1 @@
+h5dump error: unable to open file "non_existing.h5"
diff --git a/tools/h5dump/errfiles/tdset-2.err b/tools/h5dump/errfiles/tdset-2.err
index 775351e..e594c1b 100644
--- a/tools/h5dump/errfiles/tdset-2.err
+++ b/tools/h5dump/errfiles/tdset-2.err
@@ -19,7 +19,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
#000: (file name) line (number) in H5Lget_info(): unable to get link info
- major: Symbol table
+ major: Links
minor: Object not found
#001: (file name) line (number) in H5L_get_info(): name doesn't exist
major: Symbol table
diff --git a/tools/h5dump/errfiles/tperror.err b/tools/h5dump/errfiles/tperror.err
index 29f9e7f..b469029 100644
--- a/tools/h5dump/errfiles/tperror.err
+++ b/tools/h5dump/errfiles/tperror.err
@@ -19,7 +19,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
#000: (file name) line (number) in H5Lget_info(): unable to get link info
- major: Symbol table
+ major: Links
minor: Object not found
#001: (file name) line (number) in H5L_get_info(): name doesn't exist
major: Symbol table
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index 68889c9..ffba581 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -620,7 +620,7 @@ parse_hsize_list(const char *h_list, subset_d *d)
size_count++;
last_digit = 1;
- }
+ }
else {
last_digit = 0;
}
@@ -643,7 +643,7 @@ parse_hsize_list(const char *h_list, subset_d *d)
}
d->data = p_list;
d->len = size_count;
-
+
return;
}
@@ -705,7 +705,7 @@ parse_subset_params(char *dset)
*
* Purpose: Parse a list of comma or space separated integers and fill
* the packed_bits list and counter. The string being passed into this function
- * should be at the start of the list you want to parse.
+ * should be at the start of the list you want to parse.
*
* Return: Success: SUCCEED
*
@@ -831,7 +831,7 @@ static void
free_handler(struct handler_t *hand, int len)
{
int i;
-
+
if(hand) {
for (i = 0; i < len; i++) {
if(hand[i].obj) {
@@ -1161,7 +1161,7 @@ parse_start:
}
if (HDstrcmp(opt_arg,":") == 0) {
xmlnsprefix = "";
- }
+ }
else {
xmlnsprefix = opt_arg;
}
@@ -1187,7 +1187,7 @@ parse_start:
* the two.
*/
s = last_dset->subset_info;
- }
+ }
else {
last_dset->subset_info = s = (struct subset_t *)HDcalloc(1, sizeof(struct subset_t));
}
@@ -1358,7 +1358,7 @@ main(int argc, const char *argv[])
/* Disable tools error reporting */
H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
+
if((hand = parse_command_line(argc, argv))==NULL) {
goto done;
}
@@ -1444,12 +1444,12 @@ main(int argc, const char *argv[])
if (xml_dtd_uri == NULL) {
if (useschema) {
xml_dtd_uri = DEFAULT_XSD;
- }
+ }
else {
xml_dtd_uri = DEFAULT_DTD;
xmlnsprefix = "";
}
- }
+ }
else {
if (useschema && HDstrcmp(xmlnsprefix,"")) {
error_msg("Cannot set Schema URL for a qualified namespace--use -X or -U option with -D \n");
@@ -1486,7 +1486,7 @@ main(int argc, const char *argv[])
/* start to dump - display file header information */
if (!doxml) {
begin_obj(h5tools_dump_header_format->filebegin, fname, h5tools_dump_header_format->fileblockbegin);
- }
+ }
else {
PRINTVALSTREAM(rawoutstream, "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n");
@@ -1495,7 +1495,7 @@ main(int argc, const char *argv[])
if (HDstrcmp(xmlnsprefix,"") == 0) {
PRINTSTREAM(rawoutstream, "<HDF5-File xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:noNamespaceSchemaLocation=\"%s\">\n",
xml_dtd_uri);
- }
+ }
else {
/* TO DO: make -url option work in this case (may need new option) */
char *ns;
@@ -1511,7 +1511,7 @@ main(int argc, const char *argv[])
"http://www.hdfgroup.org/HDF5/XML/schema/HDF5-File.xsd\">\n",xmlnsprefix,ns);
HDfree(ns);
}
- }
+ }
else {
PRINTSTREAM(rawoutstream, "<!DOCTYPE HDF5-File PUBLIC \"HDF5-File.dtd\" \"%s\">\n", xml_dtd_uri);
PRINTVALSTREAM(rawoutstream, "<HDF5-File>\n");
@@ -1570,7 +1570,7 @@ main(int argc, const char *argv[])
if (!doxml) {
end_obj(h5tools_dump_header_format->fileend, h5tools_dump_header_format->fileblockend);
PRINTVALSTREAM(rawoutstream, "\n");
- }
+ }
else {
PRINTSTREAM(rawoutstream, "</%sHDF5-File>\n", xmlnsprefix);
}
@@ -1581,13 +1581,17 @@ main(int argc, const char *argv[])
if (H5Fclose(fid) < 0)
h5tools_setstatus(EXIT_FAILURE);
- if(prefix)
+ if(prefix) {
HDfree(prefix);
- if(fname)
+ prefix = NULL;
+ }
+ if(fname) {
HDfree(fname);
+ fname = NULL;
+ }
} /* end while */
- if(hand)
+ if(hand)
free_handler(hand, argc);
/* To Do: clean up XML table */
@@ -1601,13 +1605,17 @@ done:
if(fid >=0)
if (H5Fclose(fid) < 0)
h5tools_setstatus(EXIT_FAILURE);
-
- if(prefix)
+
+ if(prefix) {
HDfree(prefix);
- if(fname)
+ prefix = NULL;
+ }
+ if(fname) {
HDfree(fname);
+ fname = NULL;
+ }
- if(hand)
+ if(hand)
free_handler(hand, argc);
/* To Do: clean up XML table */
@@ -1660,20 +1668,20 @@ h5_fileaccess(void)
if (!HDstrcmp(name, "sec2")) {
/* Unix read() and write() system calls */
if (H5Pset_fapl_sec2(fapl)<0) return -1;
- }
+ }
else if (!HDstrcmp(name, "stdio")) {
/* Standard C fread() and fwrite() system calls */
if (H5Pset_fapl_stdio(fapl)<0) return -1;
- }
+ }
else if (!HDstrcmp(name, "core")) {
/* In-core temporary file with 1MB increment */
if (H5Pset_fapl_core(fapl, 1024*1024, FALSE)<0) return -1;
- }
+ }
else if (!HDstrcmp(name, "split")) {
/* Split meta data and raw data each using default driver */
if (H5Pset_fapl_split(fapl, "-m.h5", H5P_DEFAULT, "-r.h5", H5P_DEFAULT) < 0)
return -1;
- }
+ }
else if (!HDstrcmp(name, "multi")) {
/* Multi-file driver, general case of the split driver */
H5FD_mem_t memb_map[H5FD_MEM_NTYPES];
@@ -1699,7 +1707,7 @@ h5_fileaccess(void)
if (H5Pset_fapl_multi(fapl, memb_map, memb_fapl, memb_name, memb_addr, FALSE) < 0)
return -1;
- }
+ }
else if (!HDstrcmp(name, "family")) {
hsize_t fam_size = 100*1024*1024; /*100 MB*/
@@ -1708,7 +1716,7 @@ h5_fileaccess(void)
fam_size = (hsize_t)(HDstrtod(val, NULL) * 1024*1024);
if (H5Pset_fapl_family(fapl, fam_size, H5P_DEFAULT)<0)
return -1;
- }
+ }
else if (!HDstrcmp(name, "log")) {
long log_flags = H5FD_LOG_LOC_IO;
@@ -1718,12 +1726,12 @@ h5_fileaccess(void)
if (H5Pset_fapl_log(fapl, NULL, (unsigned)log_flags, 0) < 0)
return -1;
- }
+ }
else if (!HDstrcmp(name, "direct")) {
/* Substitute Direct I/O driver with sec2 driver temporarily because
* some output has sec2 driver as the standard. */
if (H5Pset_fapl_sec2(fapl)<0) return -1;
- }
+ }
else {
/* Unknown driver */
return -1;
diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c
index 250f96f..80051d4 100644
--- a/tools/h5dump/h5dumpgentest.c
+++ b/tools/h5dump/h5dumpgentest.c
@@ -7050,9 +7050,8 @@ gent_packedbits(void)
valu8bits = (uint8_t) ~0u; /* all 1s */
for(i = 0; i < dims[0]; i++){
dsetu8[i][0] = valu8bits;
- for(j = 1; j < dims[1]; j++) {
+ for(j = 1; j < dims[1]; j++)
dsetu8[i][j] = dsetu8[i][j-1] << 1;
- }
valu8bits <<= 1;
}
@@ -7068,9 +7067,8 @@ gent_packedbits(void)
valu16bits = (uint16_t) ~0u; /* all 1s */
for(i = 0; i < dims[0]; i++){
dsetu16[i][0] = valu16bits;
- for(j = 1; j < dims[1]; j++) {
+ for(j = 1; j < dims[1]; j++)
dsetu16[i][j] = dsetu16[i][j-1] << 1;
- }
valu16bits <<= 1;
}
@@ -7086,9 +7084,8 @@ gent_packedbits(void)
valu32bits = (uint32_t) ~0u; /* all 1s */
for(i = 0; i < dims[0]; i++){
dsetu32[i][0] = valu32bits;
- for(j = 1; j < dims[1]; j++) {
+ for(j = 1; j < dims[1]; j++)
dsetu32[i][j] = dsetu32[i][j-1] << 1;
- }
valu32bits <<= 1;
}
@@ -7104,9 +7101,8 @@ gent_packedbits(void)
valu64bits = (uint64_t) ~0Lu; /* all 1s */
for(i = 0; i < dims[0]; i++){
dsetu64[i][0] = valu64bits;
- for(j = 1; j < dims[1]; j++) {
+ for(j = 1; j < dims[1]; j++)
dsetu64[i][j] = dsetu64[i][j-1] << 1;
- }
valu64bits <<= 1;
}
@@ -7122,9 +7118,8 @@ gent_packedbits(void)
val8bits = (int8_t) ~0; /* all 1s */
for(i = 0; i < dims[0]; i++){
dset8[i][0] = val8bits;
- for(j = 1; j < dims[1]; j++) {
+ for(j = 1; j < dims[1]; j++)
dset8[i][j] = dset8[i][j-1] << 1;
- }
val8bits <<= 1;
}
@@ -7140,9 +7135,8 @@ gent_packedbits(void)
val16bits = (int16_t) ~0; /* all 1s */
for(i = 0; i < dims[0]; i++){
dset16[i][0] = val16bits;
- for(j = 1; j < dims[1]; j++) {
+ for(j = 1; j < dims[1]; j++)
dset16[i][j] = dset16[i][j-1] << 1;
- }
val16bits <<= 1;
}
@@ -7158,9 +7152,8 @@ gent_packedbits(void)
val32bits = (int32_t) ~0; /* all 1s */
for(i = 0; i < dims[0]; i++){
dset32[i][0] = val32bits;
- for(j = 1; j < dims[1]; j++) {
+ for(j = 1; j < dims[1]; j++)
dset32[i][j] = dset32[i][j-1] << 1;
- }
val32bits <<= 1;
}
@@ -7176,9 +7169,8 @@ gent_packedbits(void)
val64bits = (int64_t) ~0L; /* all 1s */
for(i = 0; i < dims[0]; i++){
dset64[i][0] = val64bits;
- for(j = 1; j < dims[1]; j++) {
+ for(j = 1; j < dims[1]; j++)
dset64[i][j] = dset64[i][j-1] << 1;
- }
val64bits <<= 1;
}
diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in
index 95f8091..267ac44 100644
--- a/tools/h5dump/testh5dump.sh.in
+++ b/tools/h5dump/testh5dump.sh.in
@@ -27,10 +27,10 @@ EXIT_FAILURE=1
DUMPER=h5dump # The tool name
DUMPER_BIN=`pwd`/$DUMPER # The path of the tool binary
-H5DIFF=../h5diff/h5diff # The h5diff tool name
+H5DIFF=../h5diff/h5diff # The h5diff tool name
H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
-H5IMPORT=../h5import/h5import # The h5import tool name
+H5IMPORT=../h5import/h5import # The h5import tool name
H5IMPORT_BIN=`pwd`/$H5IMPORT # The path of the h5import tool binary
RM='rm -rf'
@@ -176,6 +176,7 @@ LIST_OTHER_TEST_FILES="
$SRC_H5DUMP_TESTFILES/charsets.ddl
$SRC_H5DUMP_TESTFILES/file_space.ddl
$SRC_H5DUMP_TESTFILES/filter_fail.ddl
+$SRC_H5DUMP_TESTFILES/non_existing.ddl
$SRC_H5DUMP_TESTFILES/packedbits.ddl
$SRC_H5DUMP_TESTFILES/tall-1.ddl
$SRC_H5DUMP_TESTFILES/tall-2.ddl
@@ -266,7 +267,7 @@ $SRC_H5DUMP_TESTFILES/tindicessub4.ddl
$SRC_H5DUMP_TESTFILES/tindicesyes.ddl
$SRC_H5DUMP_TESTFILES/tintsattrs.ddl
$SRC_H5DUMP_TESTFILES/tlarge_objname.ddl
-#$SRC_H5DUMP_TESTFILES/tldouble.ddl
+#$SRC_H5DUMP_TESTFILES/tldouble.ddl
$SRC_H5DUMP_TESTFILES/tlonglinks.ddl
$SRC_H5DUMP_TESTFILES/tloop-1.ddl
$SRC_H5DUMP_TESTFILES/tmulti.ddl
@@ -347,6 +348,7 @@ $SRC_H5DUMP_TESTFILES/tbinregR.exp
LIST_ERROR_TEST_FILES="
${SRC_H5DUMP_ERRORFILES}/filter_fail.err
+${SRC_H5DUMP_ERRORFILES}/non_existing.err
${SRC_H5DUMP_ERRORFILES}/tall-1.err
${SRC_H5DUMP_ERRORFILES}/tall-2A.err
${SRC_H5DUMP_ERRORFILES}/tall-2A0.err
@@ -393,10 +395,10 @@ COPY_TESTFILES_TO_TESTDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $TESTDIR
+ $CP -f $tstfile $TESTDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
-
+
# Comment out this to CREATE expected file
exit $EXIT_FAILURE
fi
@@ -441,14 +443,14 @@ TESTING() {
TOOLTEST() {
# check if caseless compare and diff requested
if [ "$1" = ignorecase ]; then
- caseless="-i"
- # replace cmp with diff which runs much longer.
- xCMP="$DIFF -i"
- shift
+ caseless="-i"
+ # replace cmp with diff which runs much longer.
+ xCMP="$DIFF -i"
+ shift
else
- caseless=""
- # stick with faster cmp if ignorecase is not requested.
- xCMP="$CMP"
+ caseless=""
+ # stick with faster cmp if ignorecase is not requested.
+ xCMP="$CMP"
fi
expect="$TESTDIR/$1"
@@ -537,7 +539,7 @@ TOOLTEST2() {
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
fi
-
+
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actual $actualdata $actual_err
@@ -545,7 +547,7 @@ TOOLTEST2() {
}
-# same as TOOLTEST2 but compares generated file to expected ddl file
+# same as TOOLTEST2 but compares generated file to expected ddl file
# and compares the generated data file to the expected data file
# used for the binary tests that expect a full path in -o without -b
# ADD_H5_TEST_EXPORT
@@ -603,7 +605,7 @@ TOOLTEST2A() {
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
fi
-
+
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actual $actualdata $actual_err $actualmeta
@@ -642,7 +644,7 @@ TOOLTEST2B() {
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/ /'
fi
-
+
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actual $actualdata $actual_err
@@ -859,7 +861,7 @@ TOOLTEST_HELP() {
echo " Expected output (*.txt) differs from actual output (*.out)"
nerrors="`expr $nerrors + 1`"
fi
-
+
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actual $actual_err
@@ -872,7 +874,7 @@ SKIP() {
TESTING $DUMPER $@
echo " -SKIP-"
}
-
+
# Print a line-line message left justified in a field of 70 characters
#
PRINT_H5DIFF() {
@@ -883,7 +885,7 @@ PRINT_H5DIFF() {
# Call the h5diff tool
#
-DIFFTEST()
+DIFFTEST()
{
PRINT_H5DIFF $@
(
@@ -897,7 +899,7 @@ DIFFTEST()
else
echo " PASSED"
fi
-
+
}
# Print a line-line message left justified in a field of 70 characters
@@ -910,7 +912,7 @@ PRINT_H5IMPORT() {
# Call the h5import tool
#
-IMPORTTEST()
+IMPORTTEST()
{
# remove the output hdf5 file if it exists
hdf5_file="$TESTDIR/$5"
@@ -921,7 +923,7 @@ IMPORTTEST()
PRINT_H5IMPORT $@
(
cd $TESTDIR
- $RUNSERIAL $H5IMPORT_BIN "$@"
+ $RUNSERIAL $H5IMPORT_BIN "$@"
)
RET=$?
if [ $RET != 0 ] ; then
@@ -930,7 +932,7 @@ IMPORTTEST()
else
echo " PASSED"
fi
-
+
}
@@ -1021,7 +1023,7 @@ TOOLTEST tcomp-1.ddl --enable-error-stack tcompound.h5
# test for named data types
TOOLTEST tcomp-2.ddl --enable-error-stack -t /type1 --datatype /type2 --datatype=/group1/type3 tcompound.h5
TOOLTEST tcomp-2.ddl --enable-error-stack -N /type1 --any_path /type2 --any_path=/group1/type3 tcompound.h5
-# test for unamed type
+# test for unamed type
TOOLTEST4 tcomp-3.ddl --enable-error-stack -t /#6632 -g /group2 tcompound.h5
# test complicated compound datatype
TOOLTEST tcomp-4.ddl --enable-error-stack tcompound_complex.h5
@@ -1041,7 +1043,7 @@ TOOLTEST tall-7N.ddl --enable-error-stack -N attr1 tall.h5
# test for loop detection
TOOLTEST tloop-1.ddl --enable-error-stack tloop.h5
-# test for string
+# test for string
TOOLTEST tstr-1.ddl --enable-error-stack tstr.h5
TOOLTEST tstr-2.ddl --enable-error-stack tstr2.h5
@@ -1136,7 +1138,7 @@ TOOLTEST tcompact.ddl --enable-error-stack -H -p -d compact tfilters.h5
TOOLTEST tcontiguos.ddl --enable-error-stack -H -p -d contiguous tfilters.h5
# chunked
TOOLTEST tchunked.ddl --enable-error-stack -H -p -d chunked tfilters.h5
-# external
+# external
TOOLTEST texternal.ddl --enable-error-stack -H -p -d external tfilters.h5
# fill values
@@ -1205,7 +1207,7 @@ fi
# test for displaying objects with very long names
TOOLTEST tlonglinks.ddl --enable-error-stack tlonglinks.h5
-# dimensions over 4GB, print boundary
+# dimensions over 4GB, print boundary
TOOLTEST tbigdims.ddl --enable-error-stack -d dset4gb -s 4294967284 -c 22 tbigdims.h5
# hyperslab read
@@ -1213,7 +1215,7 @@ TOOLTEST thyperslab.ddl --enable-error-stack thyperslab.h5
#
-
+
# test for displaying dataset and attribute of null space
TOOLTEST tnullspace.ddl --enable-error-stack tnullspace.h5
@@ -1252,7 +1254,7 @@ IMPORTTEST out3.bin -c tbin3.ddl -o out3D.h5
DIFFTEST tbinary.h5 out3D.h5 /integer /integer
TOOLTEST tbin4.ddl --enable-error-stack -d double -b FILE -o out4.bin tbinary.h5
-
+
# Clean up binary output files
if test -z "$HDF5_NOCLEANUP"; then
rm -f out[1-4].bin
@@ -1260,7 +1262,7 @@ if test -z "$HDF5_NOCLEANUP"; then
rm -f out3.h5
fi
-# test for dataset region references
+# test for dataset region references
TOOLTEST tdatareg.ddl --enable-error-stack tdatareg.h5
TOOLTEST4 tdataregR.ddl --enable-error-stack -R tdatareg.h5
TOOLTEST tattrreg.ddl --enable-error-stack tattrreg.h5
@@ -1306,6 +1308,9 @@ TOOLTEST5 filter_fail.ddl --enable-error-stack filter_fail.h5
# test for -o -y for dataset with attributes
TOOLTEST2 tall-6.exp --enable-error-stack -y -o tall-6.txt -d /g1/g1.1/dset1.1.1 tall.h5
+# test for non-existing file
+TOOLTEST3 non_existing.ddl --enable-error-stack tgroup.h5 non_existing.h5
+
# Clean up temporary files/directories
CLEAN_TESTFILES_AND_TESTDIR
diff --git a/tools/h5ls/h5ls.c b/tools/h5ls/h5ls.c
index cce5f3d..98468c9 100644
--- a/tools/h5ls/h5ls.c
+++ b/tools/h5ls/h5ls.c
@@ -973,7 +973,7 @@ print_enum_type(h5tools_str_t *buffer, hid_t type, int ind)
/* Release resources */
for(i = 0; i < (unsigned)nmembs; i++)
- HDfree(name[i]);
+ H5free_memory(name[i]);
HDfree(name);
HDfree(value);
}
@@ -1856,13 +1856,10 @@ dataset_list2(hid_t dset, const char H5_ATTR_UNUSED *name)
if (vmaps) {
size_t next;
- ssize_t ssize_out;
h5tools_str_append(&buffer, " %-10s {%ld} Source {\n", "Maps:", vmaps);
for (next = 0; next < (unsigned) vmaps; next++) {
- ssize_out = H5Pget_virtual_filename(dcpl, next, NULL, 0);
H5Pget_virtual_filename(dcpl, next, f_name, sizeof(f_name));
- ssize_out = H5Pget_virtual_dsetname(dcpl, next, NULL, 0);
H5Pget_virtual_dsetname(dcpl, next, dset_name, sizeof(dset_name));
h5tools_str_append(&buffer, " %-10s ", " ");
print_string(&buffer, f_name, TRUE);
diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c
index 3959300..972014d 100644
--- a/tools/h5repack/h5repacktst.c
+++ b/tools/h5repack/h5repacktst.c
@@ -1554,6 +1554,8 @@ int main (void)
puts("All h5repack tests passed.");
+ h5tools_close();
+
return 0;
error:
diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c
index 0d39981..1876e4f 100644
--- a/tools/lib/h5tools_dump.c
+++ b/tools/lib/h5tools_dump.c
@@ -1539,7 +1539,6 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont
/* Hyperslab info */
hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */
hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */
- //hsize_t hs_count[H5S_MAX_RANK]; /* size this pass */
hsize_t hs_nelmts; /* elements in request */
/* VL data special information */
@@ -1622,11 +1621,9 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont
hs_size[i] = MIN(total_size[i] - hs_offset[i], sm_size[i]);
ctx->p_max_idx[i] = ctx->p_min_idx[i] + hs_size[i];
hs_nelmts *= hs_size[i];
-// hs_count[i] = 1;
}
H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL);
-// H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_count, hs_size);
H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL);
}
else {
diff --git a/tools/misc/h5debug.c b/tools/misc/h5debug.c
index 480450d..817f583 100644
--- a/tools/misc/h5debug.c
+++ b/tools/misc/h5debug.c
@@ -121,6 +121,10 @@ get_H5B2_class(const uint8_t *sig)
cls = H5A_BT2_CORDER;
break;
+ case H5B2_TEST2_ID:
+ cls = H5B2_TEST2;
+ break;
+
case H5B2_NUM_BTREE_ID:
default:
HDfprintf(stderr, "Unknown v2 B-tree subtype %u\n", (unsigned)(subtype));
diff --git a/tools/testfiles/non_existing.ddl b/tools/testfiles/non_existing.ddl
new file mode 100644
index 0000000..4377f8d
--- /dev/null
+++ b/tools/testfiles/non_existing.ddl
@@ -0,0 +1,31 @@
+HDF5 "tgroup.h5" {
+GROUP "/" {
+ GROUP "g1" {
+ GROUP "g1.1" {
+ }
+ GROUP "g1.2" {
+ }
+ }
+ GROUP "g2" {
+ GROUP "g2.1" {
+ GROUP "g2.1.1" {
+ }
+ GROUP "g2.1.2" {
+ }
+ GROUP "g2.1.3" {
+ }
+ }
+ }
+ GROUP "g3" {
+ GROUP "g3.1" {
+ }
+ GROUP "g3.2" {
+ }
+ GROUP "g3.3" {
+ }
+ GROUP "g3.4" {
+ }
+ }
+}
+}
+h5dump error: unable to open file "non_existing.h5"