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| author | Allen Byrne <byrn@hdfgroup.org> | 2019-11-07 15:48:56 (GMT) |
|---|---|---|
| committer | Allen Byrne <byrn@hdfgroup.org> | 2019-11-07 15:49:11 (GMT) |
| commit | 6b927a773c83bedc111dcd2ad38805f974660b15 (patch) | |
| tree | 5f836ff5409d5265161b058e75f4d806c8afff1d /tools | |
| parent | 2dd5bbfe167e3e9b6b6ee657a882e24072de4aeb (diff) | |
| download | hdf5-6b927a773c83bedc111dcd2ad38805f974660b15.zip hdf5-6b927a773c83bedc111dcd2ad38805f974660b15.tar.gz hdf5-6b927a773c83bedc111dcd2ad38805f974660b15.tar.bz2 | |
HDFFV-10876 Update h5dump and h5ls for new ref api.
Diffstat (limited to 'tools')
46 files changed, 3823 insertions, 2868 deletions
diff --git a/tools/lib/CMakeLists.txt b/tools/lib/CMakeLists.txt index 75ed627..f46eb23 100644 --- a/tools/lib/CMakeLists.txt +++ b/tools/lib/CMakeLists.txt @@ -38,7 +38,7 @@ if (NOT ONLY_SHARED_LIBS) PRIVATE "${HDF5_TOOLS_LIB_SOURCE_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) - #target_compile_definitions(${HDF5_TOOLS_LIB_TARGET} PRIVATE H5DIFF_DEBUG>) + #target_compile_definitions(${HDF5_TOOLS_LIB_TARGET} PRIVATE H5_TOOLS_DEBUG) TARGET_C_PROPERTIES (${HDF5_TOOLS_LIB_TARGET} STATIC) target_link_libraries (${HDF5_TOOLS_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET} @@ -58,7 +58,7 @@ if (BUILD_SHARED_LIBS) ) target_compile_definitions(${HDF5_TOOLS_LIBSH_TARGET} PUBLIC "H5_BUILT_AS_DYNAMIC_LIB" - #PRIVATE H5DIFF_DEBUG + #PRIVATE H5_TOOLS_DEBUG ) TARGET_C_PROPERTIES (${HDF5_TOOLS_LIBSH_TARGET} SHARED) target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index c2153e5..b22af18 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -280,7 +280,7 @@ build_match_list (const char *objname1, trav_info_t *info1, const char *objname2 /* init */ trav_table_init(&table); if (table == NULL) { - H5TOOLS_INFO(H5E_tools_min_id_g, "Cannot create traverse table"); + H5TOOLS_INFO(H5E_tools_min_info_id_g, "Cannot create traverse table"); HGOTO_DONE(-1); } /* @@ -440,7 +440,7 @@ trav_grp_symlinks(const char *path, const H5L_info_t *linfo, void *udata) trav_grp_objs,trav_grp_symlinks, tinfo, H5O_INFO_BASIC) < 0) { parallel_print("Error: Could not get file contents\n"); opts->err_stat = 1; - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Error: Could not get file contents"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Error: Could not get file contents"); } break; @@ -472,7 +472,7 @@ trav_grp_symlinks(const char *path, const H5L_info_t *linfo, void *udata) trav_grp_objs,trav_grp_symlinks, tinfo, H5O_INFO_BASIC) < 0) { parallel_print("Error: Could not get file contents\n"); opts->err_stat = 1; - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Error: Could not get file contents\n"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Error: Could not get file contents\n"); } break; @@ -482,7 +482,7 @@ trav_grp_symlinks(const char *path, const H5L_info_t *linfo, void *udata) default: parallel_print("Error: Invalid link type\n"); opts->err_stat = 1; - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Error: Invalid link type"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Error: Invalid link type"); break; } /* end of switch */ @@ -564,14 +564,14 @@ h5diff(const char *fname1, /* open file 1 */ if((file1_id = h5tools_fopen(fname1, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t)0)) < 0) { parallel_print("h5diff: <%s>: unable to open file\n", fname1); - HGOTO_ERROR(1, H5E_tools_min_id_g, "<%s>: unable to open file\n", fname1); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "<%s>: unable to open file\n", fname1); } /* end if */ /* open file 2 */ if((file2_id = h5tools_fopen(fname2, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t)0)) < 0) { parallel_print("h5diff: <%s>: unable to open file\n", fname2); - HGOTO_ERROR(1, H5E_tools_min_id_g, "<%s>: unable to open file\n", fname2); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "<%s>: unable to open file\n", fname2); } /* end if */ /*------------------------------------------------------------------------- @@ -589,11 +589,11 @@ h5diff(const char *fname1, #ifdef H5_HAVE_ASPRINTF /* Use the asprintf() routine, since it does what we're trying to do below */ if(HDasprintf(&obj1fullname, "/%s", objname1) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); #else /* H5_HAVE_ASPRINTF */ /* (malloc 2 more for "/" and end-of-line) */ if ((obj1fullname = (char*)HDmalloc(HDstrlen(objname1) + 2)) == NULL) - HGOTO_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); HDstrcpy(obj1fullname, "/"); HDstrcat(obj1fullname, objname1); @@ -607,11 +607,11 @@ h5diff(const char *fname1, #ifdef H5_HAVE_ASPRINTF /* Use the asprintf() routine, since it does what we're trying to do below */ if(HDasprintf(&obj2fullname, "/%s", objname2) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); #else /* H5_HAVE_ASPRINTF */ /* (malloc 2 more for "/" and end-of-line) */ if ((obj2fullname = (char*)HDmalloc(HDstrlen(objname2) + 2)) == NULL) - HGOTO_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); HDstrcpy(obj2fullname, "/"); HDstrcat(obj2fullname, objname2); #endif /* H5_HAVE_ASPRINTF */ @@ -630,12 +630,12 @@ h5diff(const char *fname1, /* check if link itself exist */ if(H5Lexists(file1_id, obj1fullname, H5P_DEFAULT) <= 0) { parallel_print ("Object <%s> could not be found in <%s>\n", obj1fullname, fname1); - HGOTO_ERROR(1, H5E_tools_min_id_g, "Error: Object could not be found"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Error: Object could not be found"); } /* get info from link */ if(H5Lget_info(file1_id, obj1fullname, &src_linfo1, H5P_DEFAULT) < 0) { parallel_print("Unable to get link info from <%s>\n", obj1fullname); - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Lget_info failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Lget_info failed"); } info1_lp = info1_obj; @@ -651,7 +651,7 @@ h5diff(const char *fname1, if(H5Oget_info_by_name2(file1_id, obj1fullname, &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { parallel_print("Error: Could not get file contents\n"); - HGOTO_ERROR(1, H5E_tools_min_id_g, "Error: Could not get file contents"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Error: Could not get file contents"); } obj1type = (h5trav_type_t)oinfo1.type; trav_info_add(info1_obj, obj1fullname, obj1type); @@ -680,12 +680,12 @@ h5diff(const char *fname1, /* check if link itself exist */ if(H5Lexists(file2_id, obj2fullname, H5P_DEFAULT) <= 0) { parallel_print ("Object <%s> could not be found in <%s>\n", obj2fullname, fname2); - HGOTO_ERROR(1, H5E_tools_min_id_g, "Error: Object could not be found"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Error: Object could not be found"); } /* get info from link */ if(H5Lget_info(file2_id, obj2fullname, &src_linfo2, H5P_DEFAULT) < 0) { parallel_print("Unable to get link info from <%s>\n", obj2fullname); - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Lget_info failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Lget_info failed"); } info2_lp = info2_obj; @@ -701,7 +701,7 @@ h5diff(const char *fname1, if(H5Oget_info_by_name2(file2_id, obj2fullname, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { parallel_print("Error: Could not get file contents\n"); - HGOTO_ERROR(1, H5E_tools_min_id_g, "Error: Could not get file contents"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Error: Could not get file contents"); } obj2type = (h5trav_type_t)oinfo2.type; trav_info_add(info2_obj, obj2fullname, obj2type); @@ -753,7 +753,7 @@ h5diff(const char *fname1, /* treat dangling link as error */ if(opts->m_verbose) parallel_print("Warning: <%s> is a dangling link.\n", obj1fullname); - HGOTO_ERROR(1, H5E_tools_min_id_g, "treat dangling link as error"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "treat dangling link as error"); } else { if(opts->m_verbose) @@ -767,7 +767,7 @@ h5diff(const char *fname1, } else if(l_ret1 < 0) { /* fail */ parallel_print ("Object <%s> could not be found in <%s>\n", obj1fullname, fname1); - HGOTO_ERROR(1, H5E_tools_min_id_g, "Object could not be found"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Object could not be found"); } else if(l_ret1 != 2) { /* symbolic link */ obj1type = (h5trav_type_t)trg_linfo1.trg_type; @@ -794,7 +794,7 @@ h5diff(const char *fname1, /* treat dangling link as error */ if(opts->m_verbose) parallel_print("Warning: <%s> is a dangling link.\n", obj2fullname); - HGOTO_ERROR(1, H5E_tools_min_id_g, "treat dangling link as error"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "treat dangling link as error"); } else { if(opts->m_verbose) @@ -808,7 +808,7 @@ h5diff(const char *fname1, } else if(l_ret2 < 0) { /* fail */ parallel_print ("Object <%s> could not be found in <%s>\n", obj2fullname, fname2); - HGOTO_ERROR(1, H5E_tools_min_id_g, "Object could not be found"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Object could not be found"); } else if(l_ret2 != 2) { /* symbolic link */ obj2type = (h5trav_type_t)trg_linfo2.trg_type; @@ -852,7 +852,7 @@ h5diff(const char *fname1, if(h5trav_visit(file1_id, obj1fullname, TRUE, TRUE, trav_grp_objs, trav_grp_symlinks, info1_grp, H5O_INFO_BASIC) < 0) { parallel_print("Error: Could not get file contents\n"); - HGOTO_ERROR(1, H5E_tools_min_id_g, "Could not get file contents"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Could not get file contents"); } info1_lp = info1_grp; @@ -866,7 +866,7 @@ h5diff(const char *fname1, if(h5trav_visit(file2_id, obj2fullname, TRUE, TRUE, trav_grp_objs, trav_grp_symlinks, info2_grp, H5O_INFO_BASIC) < 0) { parallel_print("Error: Could not get file contents\n"); - HGOTO_ERROR(1, H5E_tools_min_id_g, "Could not get file contents"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Could not get file contents"); } /* end if */ info2_lp = info2_grp; } @@ -1055,11 +1055,11 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, #ifdef H5_HAVE_ASPRINTF /* Use the asprintf() routine, since it does what we're trying to do below */ if(HDasprintf(&obj1_fullpath, "%s%s", grp1_path, table->objs[i].name) < 0) { - HERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); + H5TOOLS_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); } #else /* H5_HAVE_ASPRINTF */ if((obj1_fullpath = (char*)HDmalloc(HDstrlen(grp1_path) + HDstrlen(table->objs[i].name) + 1)) == NULL) { - HERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); + H5TOOLS_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); } else { HDstrcpy(obj1_fullpath, grp1_path); @@ -1072,11 +1072,11 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, #ifdef H5_HAVE_ASPRINTF /* Use the asprintf() routine, since it does what we're trying to do below */ if(HDasprintf(&obj2_fullpath, "%s%s", grp2_path, table->objs[i].name) < 0) { - HERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); + H5TOOLS_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); } #else /* H5_HAVE_ASPRINTF */ if((obj2_fullpath = (char*)HDmalloc(HDstrlen(grp2_path) + HDstrlen(table->objs[i].name) + 1)) == NULL) { - HERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); + H5TOOLS_ERROR(1, H5E_tools_min_id_g, "name buffer allocation failed"); } else { HDstrcpy(obj2_fullpath, grp2_path); @@ -1416,7 +1416,7 @@ diff(hid_t file1_id, /* target object1 - get type and name */ if ((status = H5tools_get_symlink_info(file1_id, path1, &linkinfo1, opts->follow_links)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5tools_get_symlink_info failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5tools_get_symlink_info failed"); /* dangling link */ if (status == 0) { @@ -1424,7 +1424,7 @@ diff(hid_t file1_id, /* dangling link is error */ if(opts->m_verbose) parallel_print("Warning: <%s> is a dangling link.\n", path1); - HGOTO_ERROR(1, H5E_tools_min_id_g, "dangling link is error"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "dangling link is error"); } else is_dangle_link1 = TRUE; @@ -1432,14 +1432,14 @@ diff(hid_t file1_id, /* target object2 - get type and name */ if ((status = H5tools_get_symlink_info(file2_id, path2, &linkinfo2, opts->follow_links)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5tools_get_symlink_info failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5tools_get_symlink_info failed"); /* dangling link */ if (status == 0) { if (opts->no_dangle_links) { /* dangling link is error */ if(opts->m_verbose) parallel_print("Warning: <%s> is a dangling link.\n", path2); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "dangling link is error"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "dangling link is error"); } else is_dangle_link2 = TRUE; @@ -1534,9 +1534,9 @@ diff(hid_t file1_id, */ case H5TRAV_TYPE_DATASET: if((dset1_id = H5Dopen2(file1_id, path1, H5P_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dopen2 failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dopen2 failed"); if((dset2_id = H5Dopen2(file2_id, path2, H5P_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dopen2 failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dopen2 failed"); /* verbose (-v) and report (-r) mode */ if(opts->m_verbose || opts->m_report) { do_print_objname("dataset", path1, path2, opts); @@ -1569,9 +1569,9 @@ diff(hid_t file1_id, if(H5Dclose(dset1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dclose failed"); if(H5Dclose(dset2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dclose failed"); break; /*---------------------------------------------------------------------- @@ -1580,12 +1580,12 @@ diff(hid_t file1_id, */ case H5TRAV_TYPE_NAMED_DATATYPE: if((type1_id = H5Topen2(file1_id, path1, H5P_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Topen2 failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Topen2 failed"); if((type2_id = H5Topen2(file2_id, path2, H5P_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Topen2 failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Topen2 failed"); if((status = H5Tequal(type1_id, type2_id)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tequal failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tequal failed"); /* if H5Tequal is > 0 then the datatypes refer to the same datatype */ nfound = (status > 0) ? 0 : 1; @@ -1607,9 +1607,9 @@ diff(hid_t file1_id, nfound += diff_attr(type1_id, type2_id, path1, path2, opts); if(H5Tclose(type1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose failed"); if(H5Tclose(type2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose failed"); break; /*---------------------------------------------------------------------- @@ -1625,9 +1625,9 @@ diff(hid_t file1_id, print_found(nfound); if((grp1_id = H5Gopen2(file1_id, path1, H5P_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Gclose failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Gclose failed"); if((grp2_id = H5Gopen2(file2_id, path2, H5P_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Gclose failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Gclose failed"); /*----------------------------------------------------------------- * compare attributes @@ -1639,9 +1639,9 @@ diff(hid_t file1_id, nfound += diff_attr(grp1_id, grp2_id, path1, path2, opts); if(H5Gclose(grp1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Gclose failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Gclose failed"); if(H5Gclose(grp2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Gclose failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Gclose failed"); break; diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index 2a45913..c83b88d 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -472,7 +472,7 @@ static hsize_t diff_datum( case H5T_TIME: case H5T_NCLASSES: default: - HGOTO_ERROR(1, H5E_tools_min_id_g, "Invalid type class"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Invalid type class"); break; /*------------------------------------------------------------------------- @@ -735,7 +735,12 @@ static hsize_t diff_datum( hid_t obj1_id = -1; hid_t obj2_id = -1; - if (type_size == H5R_DSET_REG_REF_BUF_SIZE) { + if (H5Tequal(m_type, H5T_STD_REF)) { + /* if (type_size == H5R_STD_REF_SIZE) */ + H5TOOLS_INFO(H5E_tools_min_info_id_g, "NEW reference type"); + } + else if (H5Tequal(m_type, H5T_STD_REF_DSETREG)) { + /* if (type_size == H5R_DSET_REG_REF_BUF_SIZE) */ hid_t region1_id = -1; hid_t region2_id = -1; @@ -769,7 +774,8 @@ static hsize_t diff_datum( * Object references. get the type and OID of the referenced object *------------------------------------------------------------------------- */ - else if (type_size == H5R_OBJ_REF_BUF_SIZE) { + else if (H5Tequal(m_type, H5T_STD_REF_OBJ)) { + /* if (type_size == H5R_OBJ_REF_BUF_SIZE) */ H5O_type_t obj1_type; H5O_type_t obj2_type; @@ -853,7 +859,7 @@ static hsize_t diff_datum( char temp2_char; if(type_size != sizeof(char)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not char size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not char size"); HDmemcpy(&temp1_char, mem1, sizeof(char)); HDmemcpy(&temp2_char, mem2, sizeof(char)); /* -d and !-p */ @@ -928,7 +934,7 @@ static hsize_t diff_datum( unsigned char temp2_uchar; if(type_size != sizeof(unsigned char)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not unsigned char size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not unsigned char size"); HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); @@ -1004,7 +1010,7 @@ static hsize_t diff_datum( short temp2_short; if(type_size != sizeof(short)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not short size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not short size"); HDmemcpy(&temp1_short, mem1, sizeof(short)); HDmemcpy(&temp2_short, mem2, sizeof(short)); @@ -1080,7 +1086,7 @@ static hsize_t diff_datum( unsigned short temp2_ushort; if(type_size != sizeof(unsigned short)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not unsigned short size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not unsigned short size"); HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short)); HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short)); @@ -1156,7 +1162,7 @@ static hsize_t diff_datum( int temp2_int; if(type_size != sizeof(int)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not int size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not int size"); HDmemcpy(&temp1_int, mem1, sizeof(int)); HDmemcpy(&temp2_int, mem2, sizeof(int)); @@ -1232,7 +1238,7 @@ static hsize_t diff_datum( unsigned int temp2_uint; if(type_size != sizeof(unsigned int)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not unsigned int size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not unsigned int size"); HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int)); HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int)); @@ -1308,7 +1314,7 @@ static hsize_t diff_datum( long temp2_long; if(type_size != sizeof(long)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not long size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not long size"); HDmemcpy(&temp1_long, mem1, sizeof(long)); HDmemcpy(&temp2_long, mem2, sizeof(long)); @@ -1384,7 +1390,7 @@ static hsize_t diff_datum( unsigned long temp2_ulong; if(type_size != sizeof(unsigned long)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not unsigned long size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not unsigned long size"); HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long)); HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long)); @@ -1468,7 +1474,7 @@ static hsize_t diff_datum( hbool_t isnan2 = FALSE; if(type_size != sizeof(float)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not float size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not float size"); HDmemcpy(&temp1_float, mem1, sizeof(float)); HDmemcpy(&temp2_float, mem2, sizeof(float)); @@ -1627,7 +1633,7 @@ static hsize_t diff_datum( hbool_t isnan2 = FALSE; if(type_size != sizeof(double)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not double size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not double size"); HDmemcpy(&temp1_double, mem1, sizeof(double)); HDmemcpy(&temp2_double, mem2, sizeof(double)); @@ -1786,7 +1792,7 @@ static hsize_t diff_datum( hbool_t isnan2 = FALSE; if(type_size != sizeof(long double)) { - HGOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not long double size"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "Type size is not long double size"); } HDmemcpy(&temp1_double, mem1, sizeof(long double)); @@ -4242,18 +4248,18 @@ int ull2float(unsigned long long ull_value, float *f_value) h5difftrace("ull2float start\n"); if ((dxpl_id = H5Pcreate(H5P_DATASET_XFER)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); src_size = H5Tget_size(H5T_NATIVE_ULLONG); dst_size = H5Tget_size(H5T_NATIVE_FLOAT); if((buf = (unsigned char*) HDcalloc((size_t )1, MAX(src_size, dst_size))) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); HDmemcpy(buf, &ull_value, src_size); /* do conversion */ if (H5Tconvert(H5T_NATIVE_ULLONG, H5T_NATIVE_FLOAT, (size_t) 1, buf, NULL, dxpl_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tconvert failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tconvert failed"); HDmemcpy(f_value, buf, dst_size); diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c index 351e6ab..cd906af 100644 --- a/tools/lib/h5diff_attr.c +++ b/tools/lib/h5diff_attr.c @@ -155,13 +155,13 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t h5difftrace("build_match_list_attrs start\n"); if(H5Oget_info2(loc1_id, &oinfo1, H5O_INFO_NUM_ATTRS) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info first object failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info first object failed"); if(H5Oget_info2(loc2_id, &oinfo2, H5O_INFO_NUM_ATTRS) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info second object failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info second object failed"); table_attrs_init(&table_lp); if (table_lp == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Table allocation failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Table allocation failed"); /*-------------------------------------------------- * build the list @@ -173,18 +173,18 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t /*------------------ * open attribute1 */ if((attr1_id = H5Aopen_by_idx(loc1_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)curr1, H5P_DEFAULT, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx first attribute failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx first attribute failed"); /* get name */ if(H5Aget_name(attr1_id, (size_t)ATTR_NAME_MAX, name1) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_name first attribute failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_name first attribute failed"); /*------------------ * open attribute2 */ if((attr2_id = H5Aopen_by_idx(loc2_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)curr2, H5P_DEFAULT, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx second attribute failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx second attribute failed"); /* get name */ if(H5Aget_name(attr2_id, (size_t)ATTR_NAME_MAX, name2) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_name second attribute failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_name second attribute failed"); /* criteria is string compare */ cmp = HDstrcmp(name1, name2); @@ -227,10 +227,10 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t /*------------------ * open attribute1 */ if((attr1_id = H5Aopen_by_idx(loc1_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)curr1, H5P_DEFAULT, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx first attribute failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx first attribute failed"); /* get name */ if(H5Aget_name(attr1_id, (size_t)ATTR_NAME_MAX, name1) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_name first attribute failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_name first attribute failed"); h5diffdebug2("build_match_list_attrs #1 name - %s\n", name1); table_attr_mark_exist(infile, name1, table_lp); @@ -250,10 +250,10 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t /*------------------ * open attribute2 */ if((attr2_id = H5Aopen_by_idx(loc2_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)curr2, H5P_DEFAULT, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx second attribute failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx second attribute failed"); /* get name */ if(H5Aget_name(attr2_id, (size_t)ATTR_NAME_MAX, name2) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_name second attribute failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_name second attribute failed"); h5diffdebug2("build_match_list_attrs #2 name - %s\n", name2); table_attr_mark_exist(infile, name2, table_lp); @@ -351,7 +351,7 @@ hsize_t diff_attr(hid_t loc1_id, h5difftrace("diff_attr start\n"); if(build_match_list_attrs(loc1_id, loc2_id, &match_list_attrs, opts) < 0) { - HGOTO_ERROR(1, H5E_tools_min_id_g, "build_match_list_attrs failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "build_match_list_attrs failed"); } h5diffdebug2("build_match_list_attrs - errstat:%d\n", opts->err_stat); @@ -372,40 +372,40 @@ hsize_t diff_attr(hid_t loc1_id, /*-------------- * attribute 1 */ if((attr1_id = H5Aopen(loc1_id, name1, H5P_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aopen first attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aopen first attribute failed"); /*-------------- * attribute 2 */ if((attr2_id = H5Aopen(loc2_id, name2, H5P_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aopen second attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aopen second attribute failed"); h5difftrace("diff_attr got attributes\n"); /* get the datatypes */ if((ftype1_id = H5Aget_type(attr1_id)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); if((ftype2_id = H5Aget_type(attr2_id)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); if((mtype1_id = H5Tget_native_type(ftype1_id, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type first attribute ftype failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type first attribute ftype failed"); if((mtype2_id = H5Tget_native_type(ftype2_id, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type second attribute ftype failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type second attribute ftype failed"); if((msize1 = H5Tget_size(mtype1_id)) == 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_size first attribute mtype failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_size first attribute mtype failed"); if((msize2 = H5Tget_size(mtype2_id)) == 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_size second attribute mtype failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_size second attribute mtype failed"); /* get the dataspace */ if((space1_id = H5Aget_space(attr1_id)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_space first attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_space first attribute failed"); if((space2_id = H5Aget_space(attr2_id)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_space second attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_space second attribute failed"); /* get dimensions */ if((rank1 = H5Sget_simple_extent_dims(space1_id, dims1, NULL)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_dims first attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_dims first attribute failed"); if((rank2 = H5Sget_simple_extent_dims(space2_id, dims2, NULL)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_dims second attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_dims second attribute failed"); /*---------------------------------------------------------------------- * check for comparable TYPE and SPACE @@ -417,21 +417,21 @@ hsize_t diff_attr(hid_t loc1_id, if(diff_can_type(ftype1_id, ftype2_id, rank1, rank2, dims1, dims2, dims1, dims2, name1, name2, opts, 0) != 1) { if(H5Tclose(ftype1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose first attribute ftype failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose first attribute ftype failed"); if(H5Tclose(ftype2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose second attribute ftype failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose second attribute ftype failed"); if(H5Sclose(space1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sclose first attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Sclose first attribute failed"); if(H5Sclose(space2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sclose second attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Sclose second attribute failed"); if(H5Aclose(attr1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aclose first attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aclose first attribute failed"); if(H5Aclose(attr2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aclose second attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aclose second attribute failed"); if(H5Tclose(mtype1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose first attribute mtype failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose first attribute mtype failed"); if(H5Tclose(mtype2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose second attribute mtype failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose second attribute mtype failed"); continue; } @@ -442,7 +442,7 @@ hsize_t diff_attr(hid_t loc1_id, */ if(FAIL == match_up_memsize(ftype1_id, ftype2_id, &mtype1_id, &mtype2_id, &msize1, &msize2)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "match_up_memsize failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "match_up_memsize failed"); /*--------------------------------------------------------------------- * read @@ -456,18 +456,18 @@ hsize_t diff_attr(hid_t loc1_id, buf2 = (void *)HDcalloc((size_t)(nelmts1), msize2); if(buf1 == NULL || buf2 == NULL) { parallel_print("cannot read into memory\n"); - HGOTO_ERROR(1, H5E_tools_min_id_g, "buffer allocation failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "buffer allocation failed"); } if(H5Aread(attr1_id, mtype1_id, buf1) < 0) { parallel_print("Failed reading attribute1 %s/%s\n", path1, name1); - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); } else buf1hasdata = TRUE; if(H5Aread(attr2_id, mtype2_id, buf2) < 0) { parallel_print("Failed reading attribute2 %s/%s\n", path2, name2); - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); } else buf2hasdata = TRUE; @@ -525,21 +525,21 @@ hsize_t diff_attr(hid_t loc1_id, buf2 = NULL; if(H5Tclose(ftype1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); if(H5Tclose(ftype2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); if(H5Sclose(space1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); if(H5Sclose(space2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); if(H5Aclose(attr1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); if(H5Aclose(attr2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); if(H5Tclose(mtype1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose first attribute mtype failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose first attribute mtype failed"); if(H5Tclose(mtype2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose second attribute mtype failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose second attribute mtype failed"); nfound_total += nfound; } diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c index 96f1d1a..56c4f0b 100644 --- a/tools/lib/h5diff_dset.c +++ b/tools/lib/h5diff_dset.c @@ -49,17 +49,17 @@ hsize_t diff_dataset(hid_t file1_id, /* Open the datasets */ if((did1 = H5Dopen2(file1_id, obj1_name, H5P_DEFAULT)) < 0) { parallel_print("Cannot open dataset <%s>\n", obj1_name); - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dopen2 first dataset failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dopen2 first dataset failed"); } if((did2 = H5Dopen2(file2_id, obj2_name, H5P_DEFAULT)) < 0) { parallel_print("Cannot open dataset <%s>\n", obj2_name); - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dopen2 second dataset failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dopen2 second dataset failed"); } if((dcpl1 = H5Dget_create_plist(did1)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist first dataset failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist first dataset failed"); if((dcpl2 = H5Dget_create_plist(did2)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist second dataset failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist second dataset failed"); /*------------------------------------------------------------------------- * check if the dataset creation property list has filters that @@ -72,7 +72,7 @@ hsize_t diff_dataset(hid_t file1_id, (status = h5tools_canreadf((opts->m_verbose ? obj2_name : NULL), dcpl2) == 1)) nfound = diff_datasetid(did1, did2, obj1_name, obj2_name, opts); else if (status < 0) { - HGOTO_ERROR(1, H5E_tools_min_id_g, "h5tools_canreadf failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "h5tools_canreadf failed"); } else { ret_value = 1; @@ -198,27 +198,27 @@ hsize_t diff_datasetid(hid_t did1, h5difftrace("diff_datasetid start\n"); /* Get the dataspace handle */ if((sid1 = H5Dget_space(did1)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_space failed"); /* Get rank */ if((rank1 = H5Sget_simple_extent_ndims(sid1)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); /* Get the dataspace handle */ if((sid2 = H5Dget_space(did2)) < 0 ) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_space failed"); /* Get rank */ if((rank2 = H5Sget_simple_extent_ndims(sid2)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); /* Get dimensions */ if(H5Sget_simple_extent_dims(sid1, dims1, maxdim1) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); /* Get dimensions */ if(H5Sget_simple_extent_dims(sid2, dims2, maxdim2) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); h5diffdebug3("rank: %ld - %ld\n", rank1, rank2); /*------------------------------------------------------------------------- @@ -228,25 +228,25 @@ hsize_t diff_datasetid(hid_t did1, /* Get the data type */ if((f_tid1 = H5Dget_type(did1)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_type failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_type failed"); /* Get the data type */ if((f_tid2 = H5Dget_type(did2)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_type failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_type failed"); /*------------------------------------------------------------------------- * get the storage layout type *------------------------------------------------------------------------- */ if((dcpl1 = H5Dget_create_plist(did1)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist failed"); if((dcpl2 = H5Dget_create_plist(did2)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dget_create_plist failed"); if((stl1 = H5Pget_layout(dcpl1)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Pget_layout failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Pget_layout failed"); if((stl2 = H5Pget_layout(dcpl2)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Pget_layout failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Pget_layout failed"); /*------------------------------------------------------------------------- * check for empty datasets @@ -288,10 +288,10 @@ hsize_t diff_datasetid(hid_t did1, */ h5difftrace("check for memory type and sizes\n"); if((m_tid1 = H5Tget_native_type(f_tid1, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type failed"); if((m_tid2 = H5Tget_native_type(f_tid2, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type failed"); m_size1 = H5Tget_size(m_tid1); m_size2 = H5Tget_size(m_tid2); @@ -357,7 +357,7 @@ hsize_t diff_datasetid(hid_t did1, if (FAIL == match_up_memsize (f_tid1, f_tid2, &m_tid1, &m_tid2, &m_size1, &m_size2)) - HGOTO_ERROR(1, H5E_tools_min_id_g, "match_up_memsize failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "match_up_memsize failed"); h5diffdebug3("m_size: %ld - %ld\n", m_size1, m_size2); dadims = dims1; dam_size = m_size1; @@ -403,10 +403,10 @@ hsize_t diff_datasetid(hid_t did1, if(buf1 != NULL && buf2 != NULL) { h5difftrace("buf1 != NULL && buf2 != NULL\n"); if(H5Dread(did1, m_tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); h5difftrace("H5Dread did2\n"); if(H5Dread(did2, m_tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); /* array diff */ nfound = diff_array(buf1, buf2, danelmts, (hsize_t)0, rank1, dadims, @@ -470,9 +470,9 @@ hsize_t diff_datasetid(hid_t did1, * E.g., sm_space. */ if((sm_buf1 = HDmalloc((size_t)sm_nbytes)) == NULL) - HGOTO_ERROR(1, H5E_tools_min_id_g, "HDmalloc failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "HDmalloc failed"); if((sm_buf2 = HDmalloc((size_t)sm_nbytes)) == NULL) - HGOTO_ERROR(1, H5E_tools_min_id_g, "HDmalloc failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "HDmalloc failed"); sm_nelmts = sm_nbytes / p_type_nbytes; sm_space = H5Screate_simple(1, &sm_nelmts, NULL); @@ -489,19 +489,19 @@ hsize_t diff_datasetid(hid_t did1, hs_nelmts *= hs_size[i]; } /* end for */ if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); if(H5Sselect_hyperslab(sid2, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); if(H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); } /* end if */ else hs_nelmts = 1; if(H5Dread(did1, m_tid1, sm_space, sid1, H5P_DEFAULT, sm_buf1) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); if(H5Dread(did2, m_tid2, sm_space, sid2, H5P_DEFAULT, sm_buf2) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(1, H5E_tools_min_id_g, "H5Dread failed"); /* get array differences. in the case of hyperslab read, increment the number of differences found in each hyperslab and pass the position at the beginning for printing */ @@ -630,9 +630,9 @@ int diff_can_type(hid_t f_tid1, /* file data type */ *------------------------------------------------------------------------- */ if((tclass1 = H5Tget_class(f_tid1)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_class first object failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_class first object failed"); if((tclass2 = H5Tget_class(f_tid2)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_class second object failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_class second object failed"); if(tclass1 != tclass2) { if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { diff --git a/tools/lib/h5diff_util.c b/tools/lib/h5diff_util.c index 41a40f1..6b5ca2f 100644 --- a/tools/lib/h5diff_util.c +++ b/tools/lib/h5diff_util.c @@ -346,7 +346,7 @@ herr_t match_up_memsize (hid_t f_tid1_id, hid_t f_tid2_id, H5Tclose(*m_tid1); if(((*m_tid1) = H5Tget_native_type(f_tid2_id, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type failed"); *m_size1 = H5Tget_size(*m_tid1); } /* end if */ @@ -354,13 +354,13 @@ herr_t match_up_memsize (hid_t f_tid1_id, hid_t f_tid2_id, H5Tclose(*m_tid2); if(((*m_tid2) = H5Tget_native_type(f_tid1_id, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type failed"); *m_size2 = H5Tget_size(*m_tid2); } /* end else */ } /* end if */ if((*m_size1) != (*m_size2)) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "native type sizes do not compare"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "native type sizes do not compare"); done: return ret_value; diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c index 627d4f2..2c5deea 100644 --- a/tools/lib/h5tools.c +++ b/tools/lib/h5tools.c @@ -27,6 +27,8 @@ hid_t H5tools_ERR_STACK_g = 0; hid_t H5tools_ERR_CLS_g = -1; hid_t H5E_tools_g = -1; hid_t H5E_tools_min_id_g = -1; +hid_t H5E_tools_min_info_id_g = -1; +hid_t H5E_tools_min_dbg_id_g = -1; int compound_data; FILE *rawattrstream = NULL; /* should initialize to stdout but gcc moans about it */ FILE *rawdatastream = NULL; /* should initialize to stdout but gcc moans about it */ @@ -440,11 +442,11 @@ h5tools_get_fapl(hid_t fapl, const char *driver, unsigned *drivernum) /* Make a copy of the FAPL, for the file open call to use, eventually */ if (fapl == H5P_DEFAULT) { if ((new_fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); } /* end if */ else { if ((new_fapl = H5Pcopy(fapl)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcopy failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcopy failed"); } /* end else */ /* Determine which driver the user wants to open the file with. Try @@ -452,7 +454,7 @@ h5tools_get_fapl(hid_t fapl, const char *driver, unsigned *drivernum) if (!HDstrcmp(driver, drivernames[SEC2_IDX])) { /* SEC2 driver */ if (H5Pset_fapl_sec2(new_fapl) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fapl_sec2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fapl_sec2 failed"); if (drivernum) *drivernum = SEC2_IDX; @@ -464,7 +466,7 @@ h5tools_get_fapl(hid_t fapl, const char *driver, unsigned *drivernum) * is the member size. */ if (H5Pset_fapl_family(new_fapl, (hsize_t) 0, H5P_DEFAULT) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fapl_family failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fapl_family failed"); if (drivernum) *drivernum = FAMILY_IDX; @@ -472,7 +474,7 @@ h5tools_get_fapl(hid_t fapl, const char *driver, unsigned *drivernum) else if (!HDstrcmp(driver, drivernames[SPLIT_IDX])) { /* SPLIT Driver */ if (H5Pset_fapl_split(new_fapl, "-m.h5", H5P_DEFAULT, "-r.h5", H5P_DEFAULT) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fapl_split failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fapl_split failed"); if (drivernum) *drivernum = SPLIT_IDX; @@ -480,7 +482,7 @@ h5tools_get_fapl(hid_t fapl, const char *driver, unsigned *drivernum) else if (!HDstrcmp(driver, drivernames[MULTI_IDX])) { /* MULTI Driver */ if (H5Pset_fapl_multi(new_fapl, NULL, NULL, NULL, NULL, TRUE) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fapl_multi failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fapl_multi failed"); if(drivernum) *drivernum = MULTI_IDX; @@ -496,7 +498,7 @@ h5tools_get_fapl(hid_t fapl, const char *driver, unsigned *drivernum) if(mpi_initialized && !mpi_finalized) { if(H5Pset_fapl_mpio(new_fapl, MPI_COMM_WORLD, MPI_INFO_NULL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fapl_mpio failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fapl_mpio failed"); if(drivernum) *drivernum = MPIO_IDX; } /* end if */ @@ -734,6 +736,7 @@ void h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hsize_t elmtno, int secnum) { + H5TOOLS_ERR_INIT(int, SUCCEED) h5tools_str_t prefix; h5tools_str_t str; /*temporary for indentation */ size_t templength = 0; @@ -745,6 +748,9 @@ h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, if (!ctx->need_prefix) return; + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); + HDmemset(&prefix, 0, sizeof(h5tools_str_t)); HDmemset(&str, 0, sizeof(h5tools_str_t)); @@ -754,9 +760,11 @@ h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, HDputc('\n', stream); PUTSTREAM(OPT(info->line_sep, ""), stream); } + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "after CR elmtno=%ld, ctx->ndims=%d", elmtno, ctx->ndims); /* Calculate new prefix */ h5tools_str_prefix(&prefix, info, elmtno, ctx->ndims, ctx); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "prefix=%s - str=%s", prefix.s, str.s); /* Write new prefix to output */ if (ctx->indent_level > 0) @@ -784,8 +792,9 @@ h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, PUTSTREAM(h5tools_str_fmt(&prefix, (size_t)0, info->line_pre), stream); templength = h5tools_str_len(&prefix); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "prefix=%s - templength=%d", prefix.s, templength); - for (u = 0; u < indentlevel; u++) + for (u = 0; u < indentlevel; u++) { /*we already made the indent for the array indices case */ if (!info->pindex) { PUTSTREAM(h5tools_str_fmt(&prefix, (size_t)0, info->line_indent), stream); @@ -795,14 +804,20 @@ h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, /*we cannot count the prefix for the array indices case */ templength += h5tools_str_len(&str); } + } + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "prefix=%s - templength=%d", prefix.s, templength); ctx->cur_column = ctx->prev_prefix_len = templength; ctx->cur_elmt = 0; ctx->need_prefix = 0; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "prefix=%s - str=%s", prefix.s, str.s); /* Free string */ h5tools_str_close(&prefix); h5tools_str_close(&str); + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); } /*------------------------------------------------------------------------- @@ -918,6 +933,7 @@ h5tools_render_element(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter) { + H5TOOLS_ERR_INIT(hbool_t, TRUE) hbool_t dimension_break = TRUE; char *s = NULL; char *section = NULL; /* a section of output */ @@ -927,7 +943,12 @@ h5tools_render_element(FILE *stream, const h5tool_format_t *info, if (stream == NULL) return dimension_break; + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter need_prefix=%d", ctx->need_prefix); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "elmt_counter=%ld - local_elmt_counter=%ld", elmt_counter, local_elmt_counter); + s = h5tools_str_fmt(buffer, (size_t)0, "%s"); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "s=%s", s); /* * If the element would split on multiple lines if printed at our @@ -970,6 +991,7 @@ h5tools_render_element(FILE *stream, const h5tool_format_t *info, dimension_break = FALSE; } } + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "elmt_counter=%ld - ctx->size_last_dim=%ld", elmt_counter, ctx->size_last_dim); /* * If the previous element occupied multiple lines and this element @@ -1027,6 +1049,7 @@ h5tools_render_element(FILE *stream, const h5tool_format_t *info, * this is necessary to print the array indices */ *curr_pos = ctx->sm_pos + local_elmt_counter; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "curr_pos=%ld - ctx->sm_pos=%ld - ctx->ndims=%ld", *curr_pos, ctx->sm_pos, ctx->ndims); h5tools_simple_prefix(stream, info, ctx, *curr_pos, secnum); } @@ -1034,6 +1057,7 @@ h5tools_render_element(FILE *stream, const h5tool_format_t *info, PUTSTREAM(OPT(info->elmt_suf2, " "), stream); ctx->cur_column += HDstrlen(OPT(info->elmt_suf2, " ")); } + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "section=%s", section); /* Print the section */ PUTSTREAM(section, stream); @@ -1041,6 +1065,10 @@ h5tools_render_element(FILE *stream, const h5tool_format_t *info, } ctx->prev_multiline = multiline; + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); + return dimension_break; } @@ -1074,22 +1102,25 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t *ptdata, hsize_t local_elmt_counter, hsize_t elmt_counter) { + H5TOOLS_ERR_INIT(hbool_t, TRUE) hbool_t dimension_break = TRUE; char *s = NULL; char *section = NULL; /* a section of output */ int secnum; /* section sequence number */ int multiline; /* datum was multiline */ + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "elmt_counter=%ld - local_elmt_counter=%ld", elmt_counter, local_elmt_counter); + s = h5tools_str_fmt(buffer, (size_t)0, "%s"); /* * If the element would split on multiple lines if printed at our * current location... */ - if (info->line_multi_new == 1 && - (ctx->cur_column + h5tools_count_ncols(s) + - HDstrlen(OPT(info->elmt_suf2, " ")) + - HDstrlen(OPT(info->line_suf, ""))) > ncols) { + if (info->line_multi_new == 1 && (ctx->cur_column + h5tools_count_ncols(s) + + HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) > ncols) { if (ctx->prev_multiline) { /* * ... and the previous element also occupied more than one @@ -1098,8 +1129,7 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; } else if ((ctx->prev_prefix_len + h5tools_count_ncols(s) + - HDstrlen(OPT(info->elmt_suf2, " ")) + - HDstrlen(OPT(info->line_suf, ""))) <= ncols) { + HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) <= ncols) { /* * ...but *could* fit on one line otherwise, then we * should end the current line and start this element on its @@ -1129,12 +1159,8 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, * is too long to fit on a line then start this element at the * beginning of the line. */ - if (info->line_multi_new == 1 && - ctx->prev_multiline && - (ctx->cur_column + - h5tools_count_ncols(s) + - HDstrlen(OPT(info->elmt_suf2, " ")) + - HDstrlen(OPT(info->line_suf, ""))) > ncols) + if (info->line_multi_new == 1 && ctx->prev_multiline && + (ctx->cur_column + h5tools_count_ncols(s) + HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) > ncols) ctx->need_prefix = TRUE; /* @@ -1150,8 +1176,7 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, * one-at a time. */ multiline = 0; - for (secnum = 0, multiline = 0; (section = HDstrtok(secnum ? NULL : s, - OPTIONAL_LINE_BREAK)); secnum++) { + for (secnum = 0, multiline = 0; (section = HDstrtok(secnum ? NULL : s, OPTIONAL_LINE_BREAK)); secnum++) { /* * If the current section plus possible suffix and end-of-line * information would cause the output to wrap then we need to @@ -1163,10 +1188,7 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, * this check to happen for the first line */ if ((!info->skip_first || local_elmt_counter) && - (ctx->cur_column + - HDstrlen(section) + - HDstrlen(OPT(info->elmt_suf2, " ")) + - HDstrlen(OPT(info->line_suf, ""))) > ncols) + (ctx->cur_column + HDstrlen(section) + HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) > ncols) ctx->need_prefix = 1; /* @@ -1177,11 +1199,12 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, if (secnum) multiline++; - /* pass to the prefix in h5tools_simple_prefix the total + /* pass to the prefix in h5tools_region_simple_prefix the total * position instead of the current stripmine position i; * this is necessary to print the array indices */ *curr_pos = ctx->sm_pos + local_elmt_counter; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "curr_pos=%ld - ctx->sm_pos=%ld", *curr_pos, ctx->sm_pos); h5tools_region_simple_prefix(stream, info, ctx, local_elmt_counter, ptdata, secnum); } @@ -1196,6 +1219,10 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, } ctx->prev_multiline = multiline; + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); + return dimension_break; } @@ -1210,16 +1237,25 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, void init_acc_pos(h5tools_context_t *ctx, hsize_t *dims) { + H5TOOLS_ERR_INIT(int, SUCCEED) int i; unsigned j; + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); + if(ctx->ndims > 0) { ctx->acc[ctx->ndims - 1] = 1; - for (i = ((int)ctx->ndims - 2); i >= 0; i--) + for (i = ((int)ctx->ndims - 2); i >= 0; i--) { ctx->acc[i] = ctx->acc[i + 1] * dims[i + 1]; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ctx->acc[%d]=%ld", i, ctx->acc[i]); + } for (j = 0; j < ctx->ndims; j++) ctx->pos[j] = 0; } + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); } /*------------------------------------------------------------------------- @@ -1234,23 +1270,26 @@ init_acc_pos(h5tools_context_t *ctx, hsize_t *dims) int render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts) { - HERR_INIT(int, SUCCEED) + H5TOOLS_ERR_INIT(int, SUCCEED) unsigned char *mem = (unsigned char*)_mem; size_t size; /* datum size */ hsize_t block_index; H5T_class_t type_class; + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); if((size = H5Tget_size(tid)) == 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); if((type_class = H5Tget_class(tid)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_class failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_class failed"); switch (type_class) { case H5T_INTEGER: case H5T_FLOAT: case H5T_ENUM: case H5T_BITFIELD: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "numbers"); block_index = block_nelmts * size; while(block_index > 0) { size_t bytes_in = 0; /* # of bytes to write */ @@ -1264,7 +1303,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t bytes_wrote = HDfwrite(mem, 1, bytes_in, stream); if(bytes_wrote != bytes_in || (0 == bytes_wrote && HDferror(stream))) - H5E_THROW(FAIL, H5E_tools_min_id_g, "fwrite failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "fwrite failed"); block_index -= (hsize_t)bytes_wrote; mem = mem + bytes_wrote; @@ -1277,6 +1316,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t char *s = NULL; unsigned char tempuchar; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_STRING"); pad = H5Tget_strpad(tid); for (block_index = 0; block_index < block_nelmts; block_index++) { @@ -1287,7 +1327,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t if (s != NULL) size = HDstrlen(s); else - H5E_THROW(FAIL, H5E_tools_min_id_g, "NULL string"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "NULL string"); } else { s = (char *) mem; @@ -1295,7 +1335,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t for (i = 0; i < size && (s[i] || pad != H5T_STR_NULLTERM); i++) { HDmemcpy(&tempuchar, &s[i], sizeof(unsigned char)); if (1 != HDfwrite(&tempuchar, sizeof(unsigned char), 1, stream)) - H5E_THROW(FAIL, H5E_tools_min_id_g, "fwrite failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "fwrite failed"); } /* i */ } /* for (block_index = 0; block_index < block_nelmts; block_index++) */ } @@ -1305,8 +1345,9 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t int snmembs; unsigned nmembs; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_COMPOUND"); if((snmembs = H5Tget_nmembers(tid)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers of compound failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers of compound failed"); nmembs = (unsigned)snmembs; for (block_index = 0; block_index < block_nelmts; block_index++) { @@ -1322,7 +1363,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t if (render_bin_output(stream, container, memb, mem + offset, 1) < 0) { H5Tclose(memb); - H5E_THROW(FAIL, H5E_tools_min_id_g, "render_bin_output of compound member failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "render_bin_output of compound member failed"); } H5Tclose(memb); @@ -1336,6 +1377,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t hsize_t dims[H5S_MAX_RANK], temp_nelmts, nelmts; hid_t memb = -1; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_ARRAY"); /* get the array's base datatype for each element */ memb = H5Tget_super(tid); ndims = H5Tget_array_ndims(tid); @@ -1350,7 +1392,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t } else { H5Tclose(memb); - H5E_THROW(FAIL, H5E_tools_min_id_g, "calculate the number of array elements failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "calculate the number of array elements failed"); } for (block_index = 0; block_index < block_nelmts; block_index++) { @@ -1358,7 +1400,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t /* dump the array element */ if (render_bin_output(stream, container, memb, mem, nelmts) < 0) { H5Tclose(memb); - H5E_THROW(FAIL, H5E_tools_min_id_g, "render_bin_output failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "render_bin_output failed"); } } H5Tclose(memb); @@ -1369,7 +1411,8 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t hsize_t nelmts; hid_t memb = -1; - /* get the VL sequences's base datatype for each element */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_VLEN"); + /* get the VL sequences's base datatype for each element */ memb = H5Tget_super(tid); for (block_index = 0; block_index < block_nelmts; block_index++) { @@ -1380,7 +1423,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t /* dump the array element */ if (render_bin_output(stream, container, memb, ((char *) (((hvl_t *)((void *)mem))->p)), nelmts) < 0) { H5Tclose(memb); - H5E_THROW(FAIL, H5E_tools_min_id_g, "render_bin_output failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "render_bin_output failed"); } } H5Tclose(memb); @@ -1388,45 +1431,58 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t break; case H5T_REFERENCE: { - if (size == H5R_DSET_REG_REF_BUF_SIZE) { - /* if (H5Tequal(tid, H5T_STD_REF_DSETREG)) */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "reference class type"); + if (H5Tequal(tid, H5T_STD_REF)) { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_STD_REF"); if (region_output) { /* region data */ - hid_t region_id = -1; - hid_t region_space = -1; + hid_t region_id = H5I_INVALID_HID; + hid_t region_space = H5I_INVALID_HID; H5S_sel_type region_type; for (block_index = 0; block_index < block_nelmts; block_index++) { mem = ((unsigned char*)_mem) + block_index * size; - region_id = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, mem); - if (region_id >= 0) { - region_space = H5Rget_region(container, H5R_DATASET_REGION, mem); - if (region_space >= 0) { - region_type = H5Sget_select_type(region_space); - if(region_type == H5S_SEL_POINTS) - render_bin_output_region_points(region_space, region_id, stream, container); - else - render_bin_output_region_blocks(region_space, region_id, stream, container); + if((region_id = H5Ropen_object((const H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) < 0) + H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, H5E_tools_min_id_g, + "H5Ropen_object H5T_STD_REF failed"); + else { + if((region_space = H5Ropen_region((const H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (!h5tools_is_zero(mem, H5Tget_size(H5T_STD_REF))) { + region_type = H5Sget_select_type(region_space); + if(region_type == H5S_SEL_POINTS) + render_bin_output_region_points(region_space, region_id, stream, container); + else + render_bin_output_region_blocks(region_space, region_id, stream, container); + } + else { + H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, H5E_tools_min_id_g, + "H5Ropen_object H5T_STD_REF NULL"); + } H5Sclose(region_space); } /* end if (region_space >= 0) */ H5Dclose(region_id); - } /* end if (region_id >= 0) */ + } } } /* end if (region_output... */ } - else if (size == H5R_OBJ_REF_BUF_SIZE) { - /* if (H5Tequal(tid, H5T_STD_REF_OBJ)) */ - ; + else if (H5Tequal(tid, H5T_STD_REF_DSETREG)) { + /* if (size == H5R_DSET_REG_REF_BUF_SIZE) */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_STD_REF_DSETREG"); + } + else if (H5Tequal(tid, H5T_STD_REF_OBJ)) { + /* if (size == H5R_OBJ_REF_BUF_SIZE) */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_STD_REF_OBJ"); } } break; case H5T_TIME: case H5T_OPAQUE: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_OPAQUE"); for (block_index = 0; block_index < block_nelmts; block_index++) { mem = ((unsigned char*)_mem) + block_index * size; if (size != HDfwrite(mem, sizeof(char), size, stream)) - H5E_THROW(FAIL, H5E_tools_min_id_g, "fwrite failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "fwrite failed"); } /* end for */ break; @@ -1434,11 +1490,13 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t case H5T_NCLASSES: default: /* Badness */ - H5E_THROW(FAIL, H5E_tools_min_id_g, "bad type class"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "bad type class"); break; } /* end switch */ CATCH + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); return ret_value; } @@ -1457,6 +1515,7 @@ int render_bin_output_region_data_blocks(hid_t region_id, FILE *stream, hid_t container, unsigned ndims, hid_t type_id, hsize_t nblocks, hsize_t *ptdata) { + H5TOOLS_ERR_INIT(int, SUCCEED); hsize_t *dims1 = NULL; hsize_t *start = NULL; hsize_t *count = NULL; @@ -1468,15 +1527,14 @@ render_bin_output_region_data_blocks(hid_t region_id, FILE *stream, void *region_buf = NULL; hsize_t blkndx; hid_t sid1 = -1; - int ret_value = SUCCEED; /* Get the dataspace of the dataset */ if((sid1 = H5Dget_space(region_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); /* Allocate space for the dimension array */ if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); /* find the dimensions of each data space from the block coordinates */ numelem = 1; @@ -1487,21 +1545,21 @@ render_bin_output_region_data_blocks(hid_t region_id, FILE *stream, /* Create dataspace for reading buffer */ if((mem_space = H5Screate_simple((int)ndims, dims1, NULL)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); if((type_size = H5Tget_size(type_id)) == 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); if((region_buf = HDmalloc(type_size * (size_t)numelem)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate region buffer"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate region buffer"); /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */ /* 1 2 n 1 2 n */ if((start = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for start"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for start"); if((count = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for count"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for count"); for (blkndx = 0; blkndx < nblocks; blkndx++) { for (jndx = 0; jndx < ndims; jndx++) { @@ -1510,29 +1568,31 @@ render_bin_output_region_data_blocks(hid_t region_id, FILE *stream, } if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); if(render_bin_output(stream, container, type_id, (char*)region_buf, numelem) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "render_bin_output of data region failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "render_bin_output of data region failed"); /* Render the region data element end */ +done: + ; } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */ - done: +CATCH HDfree(start); HDfree(count); HDfree(region_buf); HDfree(dims1); if(H5Sclose(mem_space) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); if(H5Sclose(sid1) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); return ret_value; } @@ -1551,7 +1611,7 @@ hbool_t render_bin_output_region_blocks(hid_t region_space, hid_t region_id, FILE *stream, hid_t container) { - HERR_INIT(hbool_t, TRUE) + H5TOOLS_ERR_INIT(hbool_t, TRUE) hssize_t snblocks; hsize_t nblocks; hsize_t alloc_size; @@ -1562,37 +1622,36 @@ render_bin_output_region_blocks(hid_t region_space, hid_t region_id, hid_t type_id = -1; if((snblocks = H5Sget_select_hyper_nblocks(region_space)) <= 0) - H5E_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_select_hyper_nblocks failed"); + H5TOOLS_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_select_hyper_nblocks failed"); nblocks = (hsize_t)snblocks; /* Print block information */ if((sndims = H5Sget_simple_extent_ndims(region_space)) < 0) - H5E_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + H5TOOLS_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); ndims = (unsigned)sndims; alloc_size = nblocks * ndims * 2 * sizeof(ptdata[0]); if((ptdata = (hsize_t*) HDmalloc((size_t) alloc_size)) == NULL) - HGOTO_ERROR(FALSE, H5E_tools_min_id_g, "Could not allocate buffer for ptdata"); + H5TOOLS_GOTO_ERROR(FALSE, H5E_tools_min_id_g, "Could not allocate buffer for ptdata"); if(H5Sget_select_hyper_blocklist(region_space, (hsize_t) 0, nblocks, ptdata) < 0) - HGOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Rget_select_hyper_blocklist failed"); + H5TOOLS_GOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Rget_select_hyper_blocklist failed"); if((dtype = H5Dget_type(region_id)) < 0) - HGOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Dget_type failed"); + H5TOOLS_GOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Dget_type failed"); if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Tget_native_type failed"); + H5TOOLS_GOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Tget_native_type failed"); - render_bin_output_region_data_blocks(region_id, stream, container, ndims, - type_id, nblocks, ptdata); + render_bin_output_region_data_blocks(region_id, stream, container, ndims, type_id, nblocks, ptdata); done: HDfree(ptdata); if(type_id > 0 && H5Tclose(type_id) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); if(dtype > 0 && H5Tclose(dtype) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); H5_LEAVE(TRUE) @@ -1622,40 +1681,40 @@ render_bin_output_region_data_points(hid_t region_space, hid_t region_id, FILE *stream, hid_t container, unsigned ndims, hid_t type_id, hsize_t npoints) { + H5TOOLS_ERR_INIT(int, SUCCEED); hsize_t *dims1 = NULL; size_t type_size; hid_t mem_space = -1; void *region_buf = NULL; - int ret_value = SUCCEED; if((type_size = H5Tget_size(type_id)) == 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); if((region_buf = HDmalloc(type_size * (size_t)npoints)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for region"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for region"); /* Allocate space for the dimension array */ if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); dims1[0] = npoints; if((mem_space = H5Screate_simple(1, dims1, NULL)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); if(H5Sget_simple_extent_dims(region_space, dims1, NULL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); if(render_bin_output(stream, container, type_id, (char*)region_buf, npoints) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "render_bin_output of data points failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "render_bin_output of data points failed"); done: HDfree(region_buf); HDfree(dims1); if(H5Sclose(mem_space) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); return ret_value; } @@ -1674,7 +1733,7 @@ hbool_t render_bin_output_region_points(hid_t region_space, hid_t region_id, FILE *stream, hid_t container) { - HERR_INIT(hbool_t, TRUE) + H5TOOLS_ERR_INIT(hbool_t, TRUE) hssize_t snpoints; hsize_t npoints; int sndims; @@ -1683,29 +1742,28 @@ render_bin_output_region_points(hid_t region_space, hid_t region_id, hid_t type_id = -1; if((snpoints = H5Sget_select_elem_npoints(region_space)) <= 0) - H5E_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_select_elem_npoints failed"); + H5TOOLS_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_select_elem_npoints failed"); npoints = (hsize_t)snpoints; /* Allocate space for the dimension array */ if((sndims = H5Sget_simple_extent_ndims(region_space)) < 0) - H5E_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + H5TOOLS_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); ndims = (unsigned)sndims; if((dtype = H5Dget_type(region_id)) < 0) - HGOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Dget_type failed"); + H5TOOLS_GOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Dget_type failed"); if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Tget_native_type failed"); + H5TOOLS_GOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Tget_native_type failed"); - render_bin_output_region_data_points(region_space, region_id, - stream, container, ndims, type_id, npoints); + render_bin_output_region_data_points(region_space, region_id, stream, container, ndims, type_id, npoints); done: if(type_id > 0 && H5Tclose(type_id) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); if(dtype > 0 && H5Tclose(dtype) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); H5_LEAVE(ret_value) CATCH diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h index c360230..ca8395d 100644 --- a/tools/lib/h5tools.h +++ b/tools/lib/h5tools.h @@ -91,6 +91,7 @@ #define PACKED_BITS "PACKED_BITS" #define PACKED_OFFSET "OFFSET" #define PACKED_LENGTH "LENGTH" +#define REGION "REGION" #define VDS_VIRTUAL "VIRTUAL" #define VDS_MAPPING "MAPPING" #define VDS_SOURCE "SOURCE" @@ -504,25 +505,25 @@ typedef struct h5tool_format_t { } h5tool_format_t; typedef struct h5tools_context_t { - size_t cur_column; /*current column for output */ - size_t cur_elmt; /*current element/output line */ - int need_prefix; /*is line prefix needed? */ - unsigned ndims; /*dimensionality */ - hsize_t p_min_idx[H5S_MAX_RANK]; /*min selected index */ - hsize_t p_max_idx[H5S_MAX_RANK]; /*max selected index */ - int prev_multiline; /*was prev datum multiline? */ - size_t prev_prefix_len; /*length of previous prefix */ - int continuation; /*continuation of previous data?*/ - hsize_t size_last_dim; /*the size of the last dimension, - *needed so we can break after each - *row */ - unsigned indent_level; /*the number of times we need some - *extra indentation */ - unsigned default_indent_level; /*this is used when the indent level gets changed */ + size_t cur_column; /* current column for output */ + size_t cur_elmt; /* current element/output line */ + int need_prefix; /* is line prefix needed? */ + unsigned ndims; /* dimensionality */ + hsize_t p_min_idx[H5S_MAX_RANK]; /* min selected index */ + hsize_t p_max_idx[H5S_MAX_RANK]; /* max selected index */ + int prev_multiline; /* was prev datum multiline? */ + size_t prev_prefix_len; /* length of previous prefix */ + int continuation; /*c ontinuation of previous data?*/ + hsize_t size_last_dim; /* the size of the last dimension, needed so we can break after each row */ + unsigned indent_level; /* the number of times we need some extra indentation */ + unsigned default_indent_level; /* this is used when the indent level gets changed */ hsize_t acc[H5S_MAX_RANK]; /* accumulator position */ hsize_t pos[H5S_MAX_RANK]; /* matrix position */ hsize_t sm_pos; /* current stripmine element position */ const struct H5LD_memb_t * const *cmpd_listv; /* h5watch: vector containing info about the list of compound fields to be printed */ + struct subset_t *sset; /* subsetting parameters */ + int display_index; /* */ + int display_char; /* */ } h5tools_context_t; typedef struct subset_d { @@ -569,8 +570,8 @@ H5TOOLS_DLLVAR int data_output; /* data output */ H5TOOLS_DLLVAR int attr_data_output; /* attribute data output */ /* sort parameters */ -H5TOOLS_DLLVAR H5_index_t sort_by; /*sort_by [creation_order | name] */ -H5TOOLS_DLLVAR H5_iter_order_t sort_order; /*sort_order [ascending | descending] */ +H5TOOLS_DLLVAR H5_index_t sort_by; /* sort_by [creation_order | name] */ +H5TOOLS_DLLVAR H5_iter_order_t sort_order; /* sort_order [ascending | descending] */ /* things to display or which are set via command line parameters */ H5TOOLS_DLLVAR int enable_error_stack; /* re-enable error stack; disable=0 enable=1 */ @@ -579,6 +580,7 @@ H5TOOLS_DLLVAR int enable_error_stack; /* re-enable error stack; disable=0 e #define H5_TOOLS_GROUP "GROUP" #define H5_TOOLS_DATASET "DATASET" #define H5_TOOLS_DATATYPE "DATATYPE" +#define H5_TOOLS_ATTRIBUTE "ATTRIBUTE" /* Definitions of useful routines */ H5TOOLS_DLL void h5tools_init(void); @@ -619,12 +621,12 @@ H5TOOLS_DLL hbool_t h5tools_render_element(FILE *stream, const h5tool_format_t * h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter); H5TOOLS_DLL hbool_t h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, - h5tools_str_t *buffer/*string into which to render */, - hsize_t *curr_pos/*total data element position*/, - size_t ncols, hsize_t *ptdata, - hsize_t local_elmt_counter/*element counter*/, - hsize_t elmt_counter); + h5tools_context_t *ctx, /*in,out*/ + h5tools_str_t *buffer, /*string into which to render */ + hsize_t *curr_pos, /*total data element position*/ + size_t ncols, hsize_t *ptdata, + hsize_t local_elmt_counter, /*element counter*/ + hsize_t elmt_counter); #ifdef __cplusplus } diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c index ebe5c4a..efe8a19 100644 --- a/tools/lib/h5tools_dump.c +++ b/tools/lib/h5tools_dump.c @@ -184,45 +184,30 @@ BLOCK, /*blockbegin */ }; const h5tools_dump_header_t* h5tools_dump_header_format; -table_t *h5dump_type_table = NULL; /*type table reference for datatype dump */ +table_t *h5dump_type_table = NULL; /* type table reference for datatype dump */ /* local prototypes */ + static int h5tools_print_region_data_blocks(hid_t region_id, FILE *stream, const h5tool_format_t *info, h5tools_context_t *cur_ctx, - h5tools_str_t *buffer/*string into which to render */, size_t ncols, - unsigned ndims, hid_t type_id, hsize_t nblocks, hsize_t *ptdata); - -hbool_t h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, - FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, - h5tools_str_t *buffer/*string into which to render */, - hsize_t *curr_pos/*total data element position*/, - size_t ncols, hsize_t region_elmt_counter/*element counter*/, - hsize_t elmt_counter); + h5tools_str_t *buffer, /* string into which to render */ + size_t ncols, unsigned ndims, hid_t type_id, hsize_t nblocks, hsize_t *ptdata); static int h5tools_print_region_data_points(hid_t region_space, hid_t region_id, FILE *stream, const h5tool_format_t *info, h5tools_context_t *cur_ctx, h5tools_str_t *buffer, size_t ncols, unsigned ndims, hid_t type_id, hsize_t npoints, hsize_t *ptdata); -hbool_t h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id, - FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, - h5tools_str_t *buffer/*string into which to render */, - hsize_t *curr_pos/*total data element position*/, - size_t ncols, hsize_t region_elmt_counter/*element counter*/, - hsize_t elmt_counter); - void h5tools_print_dims(h5tools_str_t *buffer, hsize_t *s, int dims); void h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, struct subset_t *sset, int dims); + h5tools_context_t *ctx, int dims); static void h5tools_print_virtual_selection(hid_t vspace, FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, - h5tools_str_t *buffer/*string into which to render */, - hsize_t *curr_pos/*total data element position*/, + h5tools_context_t *ctx, /* in,out */ + h5tools_str_t *buffer, /* string into which to render */ + hsize_t *curr_pos, /* total data element position */ size_t ncols); void @@ -269,30 +254,30 @@ h5tools_dump_init(void) */ int h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t container, - h5tools_context_t *ctx/*in,out*/, unsigned flags, - hsize_t nelmts, hid_t type, void *_mem) + h5tools_context_t *ctx, /* in,out */ + unsigned flags, hsize_t nelmts, hid_t type, void *_mem) { - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + H5TOOLS_ERR_INIT(int, SUCCEED); unsigned char *mem = (unsigned char*) _mem; - hsize_t i; /*element counter */ - size_t size; /*size of each datum */ - hid_t region_space = -1; - hid_t region_id = -1; + hsize_t i; /* element counter */ + size_t size; /* size of each datum */ hbool_t dimension_break = TRUE; - H5S_sel_type region_type; - size_t ncols = 80; /*available output width */ - h5tools_str_t buffer; /*string into which to render */ - hsize_t curr_pos = 0; /* total data element position */ - hsize_t elmt_counter = 0;/*counts the # elements printed. - *I (ptl?) needed something that - *isn't going to get reset when a new - *line is formed. I'm going to use - *this var to count elements and - *break after we see a number equal - *to the ctx->size_last_dim. */ - + size_t ncols = 80; /* available output width */ + h5tools_str_t buffer; /* string into which to render */ + hsize_t curr_pos = 0; /* total data element position */ + hsize_t elmt_counter = 0;/* counts the # elements printed. + * I (ptl?) needed something that + * isn't going to get reset when a new + * line is formed. I'm going to use + * this var to count elements and + * break after we see a number equal + * to the ctx->size_last_dim. */ + + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); /* binary dump */ if (bin_output && (rawdatastream != NULL)) { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "render_bin_output"); if (render_bin_output(rawdatastream, container, type, _mem, nelmts) < 0) { PRINTVALSTREAM(rawoutstream, "\nError in writing binary stream\n"); } @@ -301,6 +286,7 @@ h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t contai /* setup */ HDmemset(&buffer, 0, sizeof(h5tools_str_t)); size = H5Tget_size(type); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "type size is %ld", size); if (info->line_ncols > 0) ncols = info->line_ncols; @@ -311,97 +297,172 @@ h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t contai */ curr_pos = ctx->sm_pos; - if (region_output && (size == H5R_DSET_REG_REF_BUF_SIZE)) { - for (i = 0; i < nelmts; i++, ctx->cur_elmt++, elmt_counter++) { - void* memref = mem + i * size; - char ref_name[1024]; - - /* region data */ - region_id = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, memref); - if (region_id >= 0) { - region_space = H5Rget_region(container, H5R_DATASET_REGION, memref); - if (region_space >= 0) { - if (h5tools_is_zero(memref, H5Tget_size(type))) { - ctx->need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, info, ctx, curr_pos, 0); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "data render start:%ld", nelmts); + for (i = 0; i < nelmts; i++, ctx->cur_elmt++, elmt_counter++) { + void* memref = mem + i * size; - /* Render the region element begin */ - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "NULL"); + /* Render the data element begin*/ + h5tools_str_reset(&buffer); + h5tools_str_sprint(&buffer, info, container, type, memref, ctx); - dimension_break = h5tools_render_element(rawoutstream, info, - ctx, &buffer, &curr_pos, ncols, i, elmt_counter); - } - else { - if(H5Rget_name(region_id, H5R_DATASET_REGION, memref, (char*) ref_name, (size_t)1024)<0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rget_name failed"); + if (i + 1 < nelmts || (flags & END_OF_DATA) == 0) + h5tools_str_append(&buffer, "%s", OPT(info->elmt_suf1, ",")); - ctx->need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, info, ctx, curr_pos+i, 0); + dimension_break = h5tools_render_element(stream, info, ctx, &buffer, + &curr_pos, ncols, i, elmt_counter); + /* Render the data element end*/ + if(FALSE == dimension_break) + elmt_counter = 0; + } /* end for (i = 0; i < nelmts... */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "data render finish"); - /* Render the region element begin */ - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, info->dset_format, ref_name); - - dimension_break = h5tools_render_element(rawoutstream, info, - ctx, &buffer, &curr_pos, ncols, i, elmt_counter); - - region_type = H5Sget_select_type(region_space); - if(region_type == H5S_SEL_POINTS) - /* Print point information */ - dimension_break = h5tools_dump_region_data_points( - region_space, region_id, rawoutstream, info, ctx, - &buffer, &curr_pos, ncols, i, elmt_counter); - else if(region_type == H5S_SEL_HYPERSLABS) - /* Print block information */ - dimension_break = h5tools_dump_region_data_blocks( - region_space, region_id, rawoutstream, info, ctx, - &buffer, &curr_pos, ncols, i, elmt_counter); - else - HERROR(H5E_tools_g, H5E_tools_min_id_g, "invalid region type"); - /* Render the region element end */ + h5tools_str_close(&buffer); + }/* else bin */ - } /* end else to if (h5tools_is_zero(... */ - if(H5Sclose(region_space) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); - } /* end if (region_space >= 0) */ - else - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rget_region failed"); - if(H5Dclose(region_id) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); + return ret_value; +} - } /* if (region_id >= 0) */ - else { - /* if (region_id < 0) - could mean that no reference was written do not throw failure */ - H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, H5E_tools_min_id_g, "H5Rdereference failed"); - } +/*------------------------------------------------------------------------- + * Audience: Public + * Chapter: H5Tools Library + * Purpose: Print some values from an attribute referenced by object reference. + * + * Description: + * This is a special case subfunction to dump aa attribute references. + * + * Return: + * The function returns False if the last dimension has been reached, otherwise True + * + * In/Out: + * h5tools_context_t *ctx + * hsize_t *curr_pos + * + * Parameters Description: + * h5tools_str_t *buffer is the string into which to render + * hsize_t curr_pos is the total data element position + * size_t ncols + * hsize_t region_elmt_counter is the region element loop counter + * hsize_t elmt_count is the data element loop counter + *------------------------------------------------------------------------- + */ +hbool_t +h5tools_dump_region_attribute(hid_t region_id, + FILE *stream, const h5tool_format_t *info, + h5tools_context_t *ctx, /* in,out */ + h5tools_str_t *buffer, /* string into which to render */ + hsize_t *curr_pos, /* total data element position */ + size_t ncols, hsize_t region_elmt_counter, /* element counter */ + hsize_t elmt_counter) +{ + H5TOOLS_ERR_INIT(hbool_t, TRUE) + hbool_t dimension_break = TRUE; + hid_t atype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + hid_t region_space = H5I_INVALID_HID; + h5tool_format_t outputformat; /* Use to disable prefix for DATA attribute display */ - ctx->need_prefix = TRUE; + HDassert(info); + HDassert(ctx); + HDassert(buffer); - if(FALSE == dimension_break) - elmt_counter = 0; - } /* end for (i = 0; i < nelmts... */ - } /* end if (region_output... */ - else { - for (i = 0; i < nelmts; i++, ctx->cur_elmt++, elmt_counter++) { - void* memref = mem + i * size; - /* Render the data element begin*/ - h5tools_str_reset(&buffer); - h5tools_str_sprint(&buffer, info, container, type, memref, ctx); + H5TOOLS_PUSH_STACK(); - if (i + 1 < nelmts || (flags & END_OF_DATA) == 0) - h5tools_str_append(&buffer, "%s", OPT(info->elmt_suf1, ",")); + outputformat = *info; + outputformat.idx_fmt = ""; + outputformat.idx_n_fmt = ""; + outputformat.idx_sep = ""; + outputformat.line_pre = ""; - dimension_break = h5tools_render_element(stream, info, ctx, &buffer, - &curr_pos, ncols, i, elmt_counter); - /* Render the data element end*/ - if(FALSE == dimension_break) - elmt_counter = 0; - } /* end for (i = 0; i < nelmts... */ - } + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); - h5tools_str_close(&buffer); - }/* else bin */ + /* Render the region { element begin */ + h5tools_str_reset(buffer); + + h5tools_str_append(buffer, " {"); + dimension_break = h5tools_render_element(stream, &outputformat, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); + /* Render the region { element end */ + + if((region_space = H5Aget_space(region_id)) < 0) + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Aget_space failed"); + if((atype = H5Aget_type(region_id)) < 0) + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Aget_type failed"); + if((type_id = H5Tget_native_type(atype, H5T_DIR_DEFAULT)) < 0) + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Tget_native_type failed"); + + ctx->indent_level++; + ctx->need_prefix = TRUE; + + /* Render the datatype element begin */ + h5tools_str_reset(buffer); + h5tools_str_append(buffer, "%s %s ", + h5tools_dump_header_format->datatypebegin, + h5tools_dump_header_format->datatypeblockbegin); + + ctx->need_prefix = TRUE; + ctx->indent_level++; + h5tools_print_datatype(stream, buffer, info, ctx, atype, TRUE); + ctx->indent_level--; + + if (HDstrlen(h5tools_dump_header_format->datatypeblockend)) { + h5tools_str_append(buffer, "%s", h5tools_dump_header_format->datatypeblockend); + if (HDstrlen(h5tools_dump_header_format->datatypeend)) + h5tools_str_append(buffer, " "); + } + if (HDstrlen(h5tools_dump_header_format->datatypeend)) + h5tools_str_append(buffer, "%s", h5tools_dump_header_format->datatypeend); + + dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); + /* Render the datatype element end */ + + ctx->need_prefix = TRUE; + + /* Render the dataspace element begin */ + h5tools_str_reset(buffer); + h5tools_str_append(buffer, "%s ", h5tools_dump_header_format->dataspacebegin); + + h5tools_print_dataspace(buffer, region_space); + + if (HDstrlen(h5tools_dump_header_format->dataspaceblockend)) { + h5tools_str_append(buffer, "%s", h5tools_dump_header_format->dataspaceblockend); + if (HDstrlen(h5tools_dump_header_format->dataspaceend)) + h5tools_str_append(buffer, " "); + } + if (HDstrlen(h5tools_dump_header_format->dataspaceend)) + h5tools_str_append(buffer, "%s", h5tools_dump_header_format->dataspaceblockend); + + dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); + /* Render the dataspace element end */ + + if (region_output) { + ctx->need_prefix = TRUE; + + h5tools_dump_data(rawdatastream, &outputformat, ctx, region_id, FALSE); + } + done: + + if(H5Tclose(type_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + + if(H5Tclose(atype) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + + ctx->indent_level--; + ctx->need_prefix = TRUE; + + /* Render the region } element begin */ + h5tools_str_reset(buffer); + h5tools_str_append(buffer, "}"); + dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); + /* Render the region } element end */ + + H5_LEAVE(dimension_break) + +CATCH + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); return ret_value; } @@ -427,9 +488,10 @@ h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t contai static int h5tools_print_region_data_blocks(hid_t region_id, FILE *stream, const h5tool_format_t *info, h5tools_context_t *cur_ctx, - h5tools_str_t *buffer/*string into which to render */, size_t ncols, - unsigned ndims, hid_t type_id, hsize_t nblocks, hsize_t *ptdata) + h5tools_str_t *buffer, /* string into which to render */ + size_t ncols, unsigned ndims, hid_t type_id, hsize_t nblocks, hsize_t *ptdata) { + H5TOOLS_ERR_INIT(int, SUCCEED); hbool_t dimension_break = TRUE; hsize_t *dims1 = NULL; hsize_t *start = NULL; @@ -444,7 +506,6 @@ h5tools_print_region_data_blocks(hid_t region_id, unsigned indx; unsigned jndx; size_t type_size; - int ret_value = SUCCEED; hid_t mem_space = -1; hid_t sid1 = -1; h5tools_context_t ctx; @@ -457,13 +518,19 @@ h5tools_print_region_data_blocks(hid_t region_id, HDmemset(&ctx, 0, sizeof(ctx)); + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); + + if((type_size = H5Tget_size(type_id)) == 0) + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + /* Get the dataspace of the dataset */ if((sid1 = H5Dget_space(region_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); /* Allocate space for the dimension array */ if((dims1 = (hsize_t *) HDmalloc((size_t)(sizeof(hsize_t) * ndims))) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); /* find the dimensions of each data space from the block coordinates */ numelem = 1; @@ -474,21 +541,18 @@ h5tools_print_region_data_blocks(hid_t region_id, /* Create dataspace for reading buffer */ if((mem_space = H5Screate_simple((int)ndims, dims1, NULL)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); - - if((type_size = H5Tget_size(type_id)) == 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); if((region_buf = HDmalloc(type_size * (size_t)numelem)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate region buffer"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate region buffer"); /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */ /* 1 2 n 1 2 n */ if((start = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for start"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for start"); if((count = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for count"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for count"); curr_pos = 0; ctx.indent_level = cur_ctx->indent_level; @@ -503,56 +567,63 @@ h5tools_print_region_data_blocks(hid_t region_id, count[indx] = dims1[indx]; } - if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); - - if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dread failed"); - - ctx.indent_level++; - if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); - - /* assume entire data space to be printed */ - for (indx = 0; indx < (unsigned)ctx.ndims; indx++) - ctx.p_min_idx[indx] = start[indx]; - init_acc_pos(&ctx, total_size); - - /* print the data */ - region_flags = START_OF_DATA; - if (blkndx == nblocks - 1) - region_flags |= END_OF_DATA; - - for (indx = 0; indx < (unsigned)ctx.ndims; indx++) - ctx.p_max_idx[indx] = dims1[indx]; - - curr_pos = 0; - ctx.sm_pos = blkndx * 2 * ndims; - ctx.size_last_dim = dims1[ndims-1]; - - h5tools_region_simple_prefix(stream, info, &ctx, curr_pos, ptdata, 0); - - elmtno = 0; - for (numindex = 0; numindex < numelem; numindex++, elmtno++, ctx.cur_elmt++) { - /* Render the region data element begin */ - h5tools_str_reset(buffer); - - h5tools_str_append(buffer, "%s", numindex ? OPTIONAL_LINE_BREAK "" : ""); - h5tools_str_sprint(buffer, info, region_id, type_id, - ((char*)region_buf + numindex * type_size), &ctx); - - if (numindex + 1 < numelem || (region_flags & END_OF_DATA) == 0) - h5tools_str_append(buffer, "%s", OPT(info->elmt_suf1, ",")); - - dimension_break = h5tools_render_region_element(stream, info, &ctx, buffer, &curr_pos, - ncols, ptdata, numindex, elmtno); - /* Render the region data element end */ - - if(FALSE == dimension_break) - elmtno = 0; - } /* end for (numindex = 0; numindex < numelem; numindex++, elmtno++, ctx.cur_elmt++) */ + if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) >= 0) { + if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) >= 0) { + ctx.indent_level++; + if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) { + /* assume entire data space to be printed */ + for (indx = 0; indx < (unsigned)ctx.ndims; indx++) + ctx.p_min_idx[indx] = start[indx]; + init_acc_pos(&ctx, total_size); + + /* print the data */ + region_flags = START_OF_DATA; + if (blkndx == nblocks - 1) + region_flags |= END_OF_DATA; + + for (indx = 0; indx < (unsigned)ctx.ndims; indx++) + ctx.p_max_idx[indx] = dims1[indx]; + + curr_pos = 0; + ctx.sm_pos = blkndx * 2 * ndims; + ctx.size_last_dim = dims1[ndims-1]; + + h5tools_region_simple_prefix(stream, info, &ctx, curr_pos, ptdata, 0); + + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "data render start:%ld", numelem); + elmtno = 0; + for (numindex = 0; numindex < numelem; numindex++, elmtno++, ctx.cur_elmt++) { + /* Render the region data element begin */ + h5tools_str_reset(buffer); + + h5tools_str_append(buffer, "%s", numindex ? OPTIONAL_LINE_BREAK "" : ""); + h5tools_str_sprint(buffer, info, region_id, type_id, + ((char*)region_buf + numindex * type_size), &ctx); + + if (numindex + 1 < numelem || (region_flags & END_OF_DATA) == 0) + h5tools_str_append(buffer, "%s", OPT(info->elmt_suf1, ",")); + + dimension_break = h5tools_render_region_element(stream, info, &ctx, buffer, &curr_pos, + ncols, ptdata, numindex, elmtno); + /* Render the region data element end */ + + if(FALSE == dimension_break) + elmtno = 0; + } /* end for (numindex = 0; numindex < numelem; numindex++, elmtno++, ctx.cur_elmt++) */ + } + else { + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + } + ctx.indent_level--; + } + else { + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dread failed"); + } + } + else { + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); + } - ctx.indent_level--; } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */ done: @@ -562,9 +633,12 @@ h5tools_print_region_data_blocks(hid_t region_id, HDfree(dims1); if(H5Sclose(mem_space) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); if(H5Sclose(sid1) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); +CATCH + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); return ret_value; } @@ -595,13 +669,13 @@ h5tools_print_region_data_blocks(hid_t region_id, hbool_t h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id, FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, - h5tools_str_t *buffer/*string into which to render */, - hsize_t *curr_pos/*total data element position*/, - size_t ncols, hsize_t region_elmt_counter/*element counter*/, + h5tools_context_t *ctx, /* in,out */ + h5tools_str_t *buffer, /* string into which to render */ + hsize_t *curr_pos, /* total data element position */ + size_t ncols, hsize_t region_elmt_counter, /* element counter */ hsize_t elmt_counter) { - HERR_INIT(hbool_t, TRUE) + H5TOOLS_ERR_INIT(hbool_t, TRUE) hbool_t dimension_break = TRUE; hssize_t snblocks; hsize_t nblocks; @@ -609,28 +683,39 @@ h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id, hsize_t *ptdata = NULL; int sndims; unsigned ndims; - hid_t dtype = -1; - hid_t type_id = -1; - hsize_t u; + hsize_t indx; + hid_t dtype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + h5tool_format_t outputformat; /* Use to disable prefix for DATA attribute display */ HDassert(info); HDassert(ctx); HDassert(buffer); + H5TOOLS_PUSH_STACK(); + + outputformat = *info; + outputformat.idx_fmt = ""; + outputformat.idx_n_fmt = ""; + outputformat.idx_sep = ""; + outputformat.line_pre = ""; + if((snblocks = H5Sget_select_hyper_nblocks(region_space)) <= 0) - H5E_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_select_hyper_nblocks failed"); + H5TOOLS_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_select_hyper_nblocks failed"); nblocks = (hsize_t)snblocks; /* Print block information */ if((sndims = H5Sget_simple_extent_ndims(region_space)) < 0) - H5E_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + H5TOOLS_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); ndims = (unsigned)sndims; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter ndims=%d", ndims); + /* Render the region { element begin */ h5tools_str_reset(buffer); - h5tools_str_append(buffer, "{"); - dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); + h5tools_str_append(buffer, " {"); + dimension_break = h5tools_render_element(stream, &outputformat, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); /* Render the region { element end */ ctx->indent_level++; @@ -642,31 +727,29 @@ h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id, alloc_size = nblocks * ndims * 2 * sizeof(ptdata[0]); HDassert(alloc_size == (hsize_t) ((size_t) alloc_size)); /*check for overflow*/ - if((ptdata = (hsize_t*) HDmalloc((size_t) alloc_size)) == NULL) { - HERROR(H5E_tools_g, H5E_tools_min_id_g, "Could not allocate buffer for ptdata"); - HGOTO_DONE(dimension_break); - } + if((ptdata = (hsize_t*) HDmalloc((size_t) alloc_size)) == NULL) + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "Could not allocate buffer for ptdata"); if(H5Sget_select_hyper_blocklist(region_space, (hsize_t)0, nblocks, ptdata) < 0) - HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Rget_select_hyper_blocklist failed"); + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Rget_select_hyper_blocklist failed"); - for(u = 0; u < nblocks; u++) { - unsigned v; + for(indx = 0; indx < nblocks; indx++) { + unsigned loop_indx; - h5tools_str_append(buffer, info->dset_blockformat_pre, - u ? "," OPTIONAL_LINE_BREAK " " : "", (unsigned long)u); + h5tools_str_append(buffer, outputformat.dset_blockformat_pre, + indx ? "," OPTIONAL_LINE_BREAK " " : "", (unsigned long)indx); /* Start coordinates and opposite corner */ - for (v = 0; v < ndims; v++) - h5tools_str_append(buffer, "%s" HSIZE_T_FORMAT, v ? "," : "(", - ptdata[u * 2 * ndims + v]); + for (loop_indx = 0; loop_indx < ndims; loop_indx++) + h5tools_str_append(buffer, "%s" HSIZE_T_FORMAT, loop_indx ? "," : "(", + ptdata[indx * 2 * ndims + loop_indx]); - for (v = 0; v < ndims; v++) - h5tools_str_append(buffer, "%s" HSIZE_T_FORMAT, v ? "," : ")-(", - ptdata[u * 2 * ndims + v + ndims]); + for (loop_indx = 0; loop_indx < ndims; loop_indx++) + h5tools_str_append(buffer, "%s" HSIZE_T_FORMAT, loop_indx ? "," : ")-(", + ptdata[indx * 2 * ndims + loop_indx + ndims]); h5tools_str_append(buffer, ")"); - } /* end for (u = 0; u < nblocks; u++) */ + } /* end for (indx = 0; indx < nblocks; indx++) */ dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); /* Render the region datatype info and indices element end */ @@ -674,9 +757,9 @@ h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id, ctx->need_prefix = TRUE; if((dtype = H5Dget_type(region_id)) < 0) - HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Dget_type failed"); + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Dget_type failed"); if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Tget_native_type failed"); + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Tget_native_type failed"); /* Render the datatype element begin */ h5tools_str_reset(buffer); @@ -718,40 +801,47 @@ h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id, dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); /* Render the dataspace element end */ - ctx->need_prefix = TRUE; - - /* Render the databegin element begin */ - h5tools_str_reset(buffer); - h5tools_str_append(buffer, "%s %s ", - h5tools_dump_header_format->databegin, - h5tools_dump_header_format->datablockbegin); - dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); - /* Render the databegin element end */ + if (region_output) { + ctx->need_prefix = TRUE; - ctx->need_prefix = TRUE; + /* Render the databegin element begin */ + h5tools_str_reset(buffer); + h5tools_str_append(buffer, "%s %s", + h5tools_dump_header_format->databegin, + h5tools_dump_header_format->datablockbegin); + dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); + /* Render the databegin element end */ - h5tools_print_region_data_blocks(region_id, rawdatastream, info, ctx, - buffer, ncols, ndims, type_id, nblocks, ptdata); + ctx->need_prefix = TRUE; + h5tools_print_region_data_blocks(region_id, stream, info, ctx, buffer, ncols, ndims, type_id, nblocks, ptdata); + } done: HDfree(ptdata); - if(H5Tclose(type_id) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + if(type_id > 0 && H5Tclose(type_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); - if(H5Tclose(dtype) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + if(dtype > 0 && H5Tclose(dtype) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); - ctx->need_prefix = TRUE; + if (region_output) { + ctx->need_prefix = TRUE; - /* Render the dataend element begin */ - h5tools_str_reset(buffer); - h5tools_str_append(buffer, "%s %s ", - h5tools_dump_header_format->dataend, - h5tools_dump_header_format->datablockend); - dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, - ncols, region_elmt_counter, elmt_counter); - /* Render the dataend element end */ + /* Render the dataend element begin */ + h5tools_str_reset(buffer); + if(HDstrlen(h5tools_dump_header_format->datablockend)) { + h5tools_str_append(buffer, "%s", h5tools_dump_header_format->datablockend); + if(HDstrlen(h5tools_dump_header_format->dataend)) + h5tools_str_append(buffer, " "); + } + + if(HDstrlen(h5tools_dump_header_format->dataend)) + h5tools_str_append(buffer, "%s", h5tools_dump_header_format->dataend); + dimension_break = h5tools_render_element(stream, &outputformat, ctx, buffer, curr_pos, + ncols, region_elmt_counter, elmt_counter); + /* Render the dataend element end */ + } ctx->indent_level--; ctx->need_prefix = TRUE; @@ -759,13 +849,16 @@ h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id, /* Render the region } element begin */ h5tools_str_reset(buffer); h5tools_str_append(buffer, "}"); - dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, - ncols, region_elmt_counter, elmt_counter); + dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); /* Render the region } element end */ H5_LEAVE(dimension_break) - CATCH +CATCH + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); + return ret_value; } @@ -793,6 +886,7 @@ h5tools_print_region_data_points(hid_t region_space, hid_t region_id, h5tools_str_t *buffer, size_t ncols, unsigned ndims, hid_t type_id, hsize_t npoints, hsize_t *ptdata) { + H5TOOLS_ERR_INIT(int, SUCCEED); hbool_t dimension_break = TRUE; hsize_t *dims1 = NULL; hsize_t elmtno; /* elemnt index */ @@ -801,9 +895,8 @@ h5tools_print_region_data_points(hid_t region_space, hid_t region_id, hsize_t jndx; unsigned indx; size_t type_size; - int ret_value = SUCCEED; unsigned int region_flags; /* buffer extent flags */ - hid_t mem_space = -1; + hid_t mem_space = H5I_INVALID_HID; void *region_buf = NULL; h5tools_context_t ctx; @@ -813,22 +906,25 @@ h5tools_print_region_data_points(hid_t region_space, hid_t region_id, HDassert(ptdata); HDassert(ndims > 0); + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); + HDmemset(&ctx, 0, sizeof(ctx)); /* Allocate space for the dimension array */ if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); dims1[0] = npoints; /* Create dataspace for reading buffer */ if((mem_space = H5Screate_simple(1, dims1, NULL)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); if((type_size = H5Tget_size(type_id)) == 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); if((region_buf = HDmalloc(type_size * (size_t)npoints)) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for region"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for region"); curr_pos = 0; ctx.indent_level = cur_ctx->indent_level; @@ -837,64 +933,70 @@ h5tools_print_region_data_points(hid_t region_space, hid_t region_id, ctx.ndims = ndims; if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "data render start:%ld", npoints); elmtno = 0; for (jndx = 0; jndx < npoints; jndx++, elmtno++) { ctx.need_prefix = TRUE; ctx.cur_elmt = 0; /* points are always 0 */ - ctx.indent_level++; - if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); - /* assume entire data space to be printed */ - for (indx = 0; indx < ctx.ndims; indx++) - ctx.p_min_idx[indx] = 0; - init_acc_pos(&ctx, total_size); + if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) { + /* assume entire data space to be printed */ + for (indx = 0; indx < ctx.ndims; indx++) + ctx.p_min_idx[indx] = 0; + init_acc_pos(&ctx, total_size); - /* print the data */ - region_flags = START_OF_DATA; - if (jndx == npoints - 1) - region_flags |= END_OF_DATA; - - for (indx = 0; indx < ctx.ndims; indx++) - ctx.p_max_idx[indx] = cur_ctx->p_max_idx[indx]; + /* print the data */ + region_flags = START_OF_DATA; + if (jndx == npoints - 1) + region_flags |= END_OF_DATA; - ctx.sm_pos = jndx * ndims; - if (ctx.ndims > 0) - ctx.size_last_dim = ctx.p_max_idx[ctx.ndims - 1]; - else - ctx.size_last_dim = 0; + for (indx = 0; indx < ctx.ndims; indx++) + ctx.p_max_idx[indx] = cur_ctx->p_max_idx[indx]; - curr_pos = 0; /* points requires constant 0 */ - h5tools_region_simple_prefix(stream, info, &ctx, curr_pos, ptdata, 0); + ctx.sm_pos = jndx * ndims; + if (ctx.ndims > 0) + ctx.size_last_dim = ctx.p_max_idx[ctx.ndims - 1]; + else + ctx.size_last_dim = 0; - /* Render the point element begin */ - h5tools_str_reset(buffer); + curr_pos = 0; /* points requires constant 0 */ + h5tools_region_simple_prefix(stream, info, &ctx, curr_pos, ptdata, 0); - h5tools_str_append(buffer, "%s", jndx ? OPTIONAL_LINE_BREAK "" : ""); - h5tools_str_sprint(buffer, info, region_id, type_id, - ((char*)region_buf + jndx * type_size), &ctx); + /* Render the point element begin */ + h5tools_str_reset(buffer); - if (jndx + 1 < npoints || (region_flags & END_OF_DATA) == 0) - h5tools_str_append(buffer, "%s", OPT(info->elmt_suf1, ",")); + h5tools_str_append(buffer, "%s", jndx ? OPTIONAL_LINE_BREAK "" : ""); + h5tools_str_sprint(buffer, info, region_id, type_id, + ((char*)region_buf + jndx * type_size), &ctx); - dimension_break = h5tools_render_region_element(stream, info, &ctx, buffer, &curr_pos, - ncols, ptdata, (hsize_t)0, elmtno); - /* Render the point element end */ - if(FALSE == dimension_break) - elmtno = 0; + if (jndx + 1 < npoints || (region_flags & END_OF_DATA) == 0) + h5tools_str_append(buffer, "%s", OPT(info->elmt_suf1, ",")); + dimension_break = h5tools_render_region_element(stream, info, &ctx, buffer, &curr_pos, + ncols, ptdata, (hsize_t)0, elmtno); + /* Render the point element end */ + if(FALSE == dimension_break) + elmtno = 0; + } + else { + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + } ctx.indent_level--; } /* end for (jndx = 0; jndx < npoints; jndx++, elmtno++) */ - done: +done: HDfree(region_buf); +CATCH HDfree(dims1); if(H5Sclose(mem_space) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); return ret_value; } @@ -926,8 +1028,9 @@ hbool_t h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t region_elmt_counter, - hsize_t elmt_counter) { - HERR_INIT(hbool_t, TRUE) + hsize_t elmt_counter) +{ + H5TOOLS_ERR_INIT(hbool_t, TRUE) hbool_t dimension_break = TRUE; hssize_t snpoints; hsize_t npoints; @@ -936,48 +1039,59 @@ h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, int sndims; unsigned ndims; hsize_t indx; - hid_t dtype = -1; - hid_t type_id = -1; + hid_t dtype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + h5tool_format_t outputformat; /* Use to disable prefix for DATA attribute display */ HDassert(info); HDassert(ctx); HDassert(buffer); + H5TOOLS_PUSH_STACK(); + + outputformat = *info; + outputformat.idx_fmt = ""; + outputformat.idx_n_fmt = ""; + outputformat.idx_sep = ""; + outputformat.line_pre = ""; + if((snpoints = H5Sget_select_elem_npoints(region_space)) <= 0) - H5E_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_select_elem_npoints failed"); + H5TOOLS_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_select_elem_npoints failed"); npoints = (hsize_t)snpoints; /* Allocate space for the dimension array */ if((sndims = H5Sget_simple_extent_ndims(region_space)) < 0) - H5E_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + H5TOOLS_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); ndims = (unsigned)sndims; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter ndims=%d", ndims); + /* Render the region { element begin */ h5tools_str_reset(buffer); h5tools_str_append(buffer, "{"); - dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); + dimension_break = h5tools_render_element(stream, &outputformat, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); /* Render the region { element end */ - /* Render the region datatype info and indices element begin */ - h5tools_str_reset(buffer); - ctx->indent_level++; ctx->need_prefix = TRUE; + + /* Render the region datatype info and indices element begin */ + h5tools_str_reset(buffer); h5tools_str_append(buffer, "REGION_TYPE POINT "); alloc_size = npoints * ndims * sizeof(ptdata[0]); HDassert(alloc_size == (hsize_t) ((size_t) alloc_size)); /*check for overflow*/ if(NULL == (ptdata = (hsize_t *)HDmalloc((size_t) alloc_size))) - HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "Could not allocate buffer for ptdata"); + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "Could not allocate buffer for ptdata"); if(H5Sget_select_elem_pointlist(region_space, (hsize_t) 0, npoints, ptdata) < 0) - HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Sget_select_elem_pointlist failed"); + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Sget_select_elem_pointlist failed"); for (indx = 0; indx < npoints; indx++) { unsigned loop_indx; - h5tools_str_append(buffer, info->dset_ptformat_pre, + h5tools_str_append(buffer, outputformat.dset_ptformat_pre, indx ? "," OPTIONAL_LINE_BREAK " " : "", (unsigned long) indx); for (loop_indx = 0; loop_indx < ndims; loop_indx++) @@ -993,10 +1107,9 @@ h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, ctx->need_prefix = TRUE; if((dtype = H5Dget_type(region_id)) < 0) - HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Dget_type failed"); - + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Dget_type failed"); if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Tget_native_type failed"); + H5TOOLS_GOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Tget_native_type failed"); /* Render the datatype element begin */ h5tools_str_reset(buffer); @@ -1023,8 +1136,6 @@ h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, /* Render the dataspace element begin */ h5tools_str_reset(buffer); - - ctx->need_prefix = TRUE; h5tools_str_append(buffer, "%s ", h5tools_dump_header_format->dataspacebegin); h5tools_print_dataspace(buffer, region_space); @@ -1040,41 +1151,49 @@ h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); /* Render the dataspace element end */ - ctx->need_prefix = TRUE; + if (region_output) { + ctx->need_prefix = TRUE; - /* Render the databegin element begin */ - h5tools_str_reset(buffer); + /* Render the databegin element begin */ + h5tools_str_reset(buffer); - h5tools_str_append(buffer, "%s %s ", - h5tools_dump_header_format->databegin, - h5tools_dump_header_format->datablockbegin); + h5tools_str_append(buffer, "%s %s", + h5tools_dump_header_format->databegin, + h5tools_dump_header_format->datablockbegin); - dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); + dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter); - ctx->need_prefix = TRUE; + ctx->need_prefix = TRUE; - h5tools_print_region_data_points(region_space, region_id, - rawdatastream, info, ctx, buffer, ncols, ndims, type_id, npoints, ptdata); + h5tools_print_region_data_points(region_space, region_id, stream, info, ctx, buffer, ncols, ndims, type_id, npoints, ptdata); + } done: HDfree(ptdata); if(type_id > 0 && H5Tclose(type_id) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); if(dtype > 0 && H5Tclose(dtype) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); - ctx->need_prefix = TRUE; + if (region_output) { + ctx->need_prefix = TRUE; - /* Render the dataend element begin */ - h5tools_str_reset(buffer); - h5tools_str_append(buffer, "%s %s ", - h5tools_dump_header_format->dataend, - h5tools_dump_header_format->datablockend); - dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, - ncols, region_elmt_counter, elmt_counter); - /* Render the dataend element end*/ + /* Render the dataend element begin */ + h5tools_str_reset(buffer); + if(HDstrlen(h5tools_dump_header_format->datablockend)) { + h5tools_str_append(buffer, "%s", h5tools_dump_header_format->datablockend); + if(HDstrlen(h5tools_dump_header_format->dataend)) + h5tools_str_append(buffer, " "); + } + + if(HDstrlen(h5tools_dump_header_format->dataend)) + h5tools_str_append(buffer, "%s", h5tools_dump_header_format->dataend); + dimension_break = h5tools_render_element(stream, &outputformat, ctx, buffer, curr_pos, + ncols, region_elmt_counter, elmt_counter); + /* Render the dataend element end*/ + } ctx->indent_level--; ctx->need_prefix = TRUE; @@ -1088,6 +1207,10 @@ h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, H5_LEAVE(dimension_break) CATCH + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); + return ret_value; } @@ -1125,16 +1248,16 @@ CATCH */ static herr_t h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, - hid_t dset, hid_t p_type, struct subset_t *sset, + hid_t dset, hid_t p_type, hid_t f_space, hsize_t hyperslab_count, - hsize_t *temp_start,/* start inside offset count loop */ - hsize_t *temp_count,/* count inside offset count loop */ - hsize_t *temp_block,/* block size used in loop */ - hsize_t *temp_stride,/* stride size used in loop */ - hsize_t *total_size,/* total size of dataset */ - unsigned int row_dim/* index of row_counter dimension */) + hsize_t *temp_start, /* start inside offset count loop */ + hsize_t *temp_count, /* count inside offset count loop */ + hsize_t *temp_block, /* block size used in loop */ + hsize_t *temp_stride, /* stride size used in loop */ + hsize_t *total_size, /* total size of dataset */ + unsigned int row_dim) /* index of row_counter dimension */ { - HERR_INIT(herr_t, SUCCEED) + H5TOOLS_ERR_INIT(herr_t, SUCCEED) size_t i; /* counters */ size_t j; /* counters */ hsize_t zero[1] = {0}; /* vector of zeros */ @@ -1148,7 +1271,7 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c hssize_t ssm_nelmts; /* elements per stripmine*/ hsize_t sm_nelmts; /* elements per stripmine*/ unsigned char *sm_buf = NULL; /* buffer for raw data */ - hid_t sm_space = -1; /* stripmine data space */ + hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */ hsize_t size_row_block; /* size for blocks along rows */ hsize_t row_counter = 0; @@ -1156,12 +1279,12 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c unsigned int vl_data = 0; /* contains VL datatypes */ if ((size_t) ctx->ndims > NELMTS(sm_size)) - H5E_THROW(FAIL, H5E_tools_min_id_g, "ndims and sm_size comparision failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "ndims and sm_size comparision failed"); if (ctx->ndims > 0) init_acc_pos(ctx, total_size); - size_row_block = sset->block.data[row_dim]; + size_row_block = ctx->sset->block.data[row_dim]; /* Check if we have VL data in the dataset's datatype */ if (h5tools_detect_vlen(p_type) == TRUE) @@ -1173,9 +1296,9 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c cases where block > 1 only and stride > block */ if (size_row_block > 1 && row_counter == size_row_block - && sset->stride.data[row_dim] > sset->block.data[row_dim]) { + && ctx->sset->stride.data[row_dim] > ctx->sset->block.data[row_dim]) { - hsize_t increase_rows = sset->stride.data[row_dim] - sset->block.data[row_dim]; + hsize_t increase_rows = ctx->sset->stride.data[row_dim] - ctx->sset->block.data[row_dim]; temp_start[row_dim] += increase_rows; row_counter = 0; } @@ -1184,10 +1307,10 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c /* calculate the potential number of elements we're going to print */ if(H5Sselect_hyperslab(f_space, H5S_SELECT_SET, temp_start, temp_stride, temp_count, temp_block) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); if((ssm_nelmts = H5Sget_select_npoints(f_space)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_select_npoints failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_select_npoints failed"); sm_nelmts = (hsize_t)ssm_nelmts; if (sm_nelmts > 0) { @@ -1196,7 +1319,7 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c * a hyperslab whose size is manageable. */ if((sm_nbytes = p_type_nbytes = H5Tget_size(p_type)) == 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); if (ctx->ndims > 0) for (i = ctx->ndims; i > 0; --i) { @@ -1210,17 +1333,17 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c HDassert(sm_nbytes == (hsize_t) ((size_t) sm_nbytes)); /*check for overflow*/ if(NULL == (sm_buf = (unsigned char *)HDmalloc((size_t) sm_nelmts * p_type_nbytes))) - H5E_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for strip-mine"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for strip-mine"); if((sm_space = H5Screate_simple(1, &sm_nelmts, NULL)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); if(H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &sm_nelmts, NULL) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); /* read the data */ if(H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Dread failed"); /* print the data */ flags = START_OF_DATA; @@ -1234,7 +1357,7 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c /* print array indices. get the lower bound of the hyperslab and calulate the element position at the start of hyperslab */ if(H5Sget_select_bounds(f_space, low, high) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_select_bounds failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_select_bounds failed"); elmtno = 0; for (i = 0; i < (size_t) ctx->ndims - 1; i++) { @@ -1252,20 +1375,20 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c ctx->need_prefix = TRUE; if(h5tools_dump_simple_data(stream, info, dset, ctx, flags, sm_nelmts, p_type, sm_buf) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "h5tools_dump_simple_data failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "h5tools_dump_simple_data failed"); /* Reclaim any VL memory, if necessary */ if (vl_data) H5Treclaim(p_type, sm_space, H5P_DEFAULT, sm_buf); if(H5Sclose(sm_space) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); if(sm_buf) HDfree(sm_buf); sm_buf = NULL; } else - H5E_THROW(SUCCEED, H5E_tools_min_id_g, "nothing to print"); + H5TOOLS_THROW(SUCCEED, H5E_tools_min_id_g, "nothing to print"); ctx->continuation++; @@ -1312,8 +1435,7 @@ CATCH */ static herr_t h5tools_display_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, - hid_t dset, hid_t p_type, struct subset_t *sset, - hid_t f_space, hsize_t *total_size) + hid_t dset, hid_t p_type, hid_t f_space, hsize_t *total_size) { size_t i; /* counters */ hsize_t n; /* counters */ @@ -1339,21 +1461,21 @@ h5tools_display_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools if (ctx->ndims > 2) for (i = 0; i < (size_t) ctx->ndims - 2; i++) { /* block size is handled by containing h5tools_print_simple_subset call */ - outer_count = outer_count * sset->count.data[i]; + outer_count = outer_count * ctx->sset->count.data[i]; } /* initialize temporary start, count and maximum start */ for (i = 0; i < ctx->ndims; i++) { - temp_start[i] = sset->start.data[i]; - temp_count[i] = sset->count.data[i]; - temp_block[i] = sset->block.data[i]; - temp_stride[i] = sset->stride.data[i]; + temp_start[i] = ctx->sset->start.data[i]; + temp_count[i] = ctx->sset->count.data[i]; + temp_block[i] = ctx->sset->block.data[i]; + temp_stride[i] = ctx->sset->stride.data[i]; max_start[i] = 0; } if (ctx->ndims > 2) { for (i = 0; i < (size_t) ctx->ndims - 2; i++) { - max_start[i] = temp_start[i] + sset->count.data[i] * sset->stride.data[i]; + max_start[i] = temp_start[i] + ctx->sset->count.data[i] * ctx->sset->stride.data[i]; temp_count[i] = 1; } } @@ -1364,14 +1486,14 @@ h5tools_display_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools if (ctx->ndims > 1) { /* count is the number of iterations to display all the rows, the block size count times */ - count = sset->count.data[row_dim] * sset->block.data[row_dim]; + count = ctx->sset->count.data[row_dim] * ctx->sset->block.data[row_dim]; /* always 1 row_counter at a time, that is a block of size 1, 1 time */ temp_count[row_dim] = 1; temp_block[row_dim] = 1; /* advance 1 row_counter at a time */ - if (sset->block.data[row_dim] > 1) + if (ctx->sset->block.data[row_dim] > 1) temp_stride[row_dim] = 1; } /* for the 1D case */ @@ -1379,7 +1501,7 @@ h5tools_display_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools count = 1; } - h5tools_print_simple_subset(stream, info, ctx, dset, p_type, sset, + h5tools_print_simple_subset(stream, info, ctx, dset, p_type, f_space, count, temp_start, temp_count, temp_block, temp_stride, total_size, row_dim); @@ -1389,14 +1511,14 @@ h5tools_display_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools /* set start to original from current_outer_dim up */ for (i = (size_t)(current_outer_dim + 1); i < ctx->ndims; i++) - temp_start[i] = sset->start.data[i]; + temp_start[i] = ctx->sset->start.data[i]; /* increment start dimension */ do { reset_dim = 0; - temp_start[current_outer_dim] += sset->stride.data[current_outer_dim]; + temp_start[current_outer_dim] += ctx->sset->stride.data[current_outer_dim]; if (temp_start[current_outer_dim] >= max_start[current_outer_dim]) { - temp_start[current_outer_dim] = sset->start.data[current_outer_dim]; + temp_start[current_outer_dim] = ctx->sset->start.data[current_outer_dim]; current_outer_dim--; reset_dim = 1; @@ -1452,20 +1574,20 @@ h5tools_display_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools *------------------------------------------------------------------------- */ static herr_t -h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t dset, - hid_t p_type, struct subset_t *sset) +h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, + hid_t dset, hid_t p_type) { - HERR_INIT(herr_t, SUCCEED) + H5TOOLS_ERR_INIT(herr_t, SUCCEED) int sndims; - hid_t f_space = -1; /* file data space */ + hid_t f_space = H5I_INVALID_HID; /* file data space */ size_t i; /* counters */ hsize_t total_size[H5S_MAX_RANK];/* total size of dataset*/ if((f_space = H5Dget_space(dset)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); if((sndims = H5Sget_simple_extent_ndims(f_space)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); ctx->ndims = (unsigned)sndims; /* assume entire data space to be printed */ @@ -1474,17 +1596,17 @@ h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_co ctx->p_min_idx[i] = 0; if(H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); ctx->size_last_dim = total_size[ctx->ndims - 1]; /* Set the compound datatype field list for display */ ctx->cmpd_listv = info->cmpd_listv; - h5tools_display_simple_subset(stream, info, ctx, dset, p_type, sset, f_space, total_size); + h5tools_display_simple_subset(stream, info, ctx, dset, p_type, f_space, total_size); CATCH if(f_space >= 0 && H5Sclose(f_space) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); return ret_value; } @@ -1508,8 +1630,8 @@ static int h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t dset, hid_t p_type) { - HERR_INIT(herr_t, SUCCEED) - hid_t f_space = -1; /* file data space */ + H5TOOLS_ERR_INIT(herr_t, SUCCEED) + hid_t f_space = H5I_INVALID_HID; /* file data space */ hsize_t elmtno; /* counter */ size_t i; /* counter */ int sndims; /* rank of dataspace */ @@ -1527,7 +1649,7 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont hsize_t sm_nbytes; /* bytes per stripmine */ hsize_t sm_nelmts; /* elements per stripmine*/ unsigned char *sm_buf = NULL; /* buffer for raw data */ - hid_t sm_space = -1; /* stripmine data space */ + hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */ /* Hyperslab info */ hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */ @@ -1537,18 +1659,19 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont /* VL data special information */ unsigned int vl_data = 0; /* contains VL datatypes */ - f_space = H5Dget_space(dset); - - if (f_space == FAIL) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); + if (FAIL == (f_space = H5Dget_space(dset))) + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); sndims = H5Sget_simple_extent_ndims(f_space); if(sndims < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_simple_extent_ndims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_simple_extent_ndims failed"); ctx->ndims = (unsigned)sndims; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "sndims:%d", sndims); if ((size_t)ctx->ndims > NELMTS(sm_size)) - H5E_THROW(FAIL, H5E_tools_min_id_g, "ctx->ndims > NELMTS(sm_size) failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "ctx->ndims > NELMTS(sm_size) failed"); /* Assume entire data space to be printed */ if (ctx->ndims > 0) @@ -1581,7 +1704,6 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont * a hyperslab whose size is manageable. */ sm_nbytes = p_type_nbytes = H5Tget_size(p_type); - if (ctx->ndims > 0) { for (i = ctx->ndims; i > 0; --i) { hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes; @@ -1589,88 +1711,96 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont size = 1; sm_size[i - 1] = MIN(total_size[i - 1], size); sm_nbytes *= sm_size[i - 1]; - HDassert(sm_nbytes > 0); } } - if(!sm_nbytes) goto done; HDassert(sm_nbytes == (hsize_t)((size_t)sm_nbytes)); /*check for overflow*/ - sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes); - - sm_nelmts = sm_nbytes / p_type_nbytes; - sm_space = H5Screate_simple(1, &sm_nelmts, NULL); - - if (ctx->ndims > 0) - init_acc_pos(ctx, total_size); + if (NULL != (sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes))) { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "stripmine size:%ld", sm_nbytes); + + sm_nelmts = sm_nbytes / p_type_nbytes; + sm_space = H5Screate_simple(1, &sm_nelmts, NULL); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "sm_nelmts size:%ld", sm_nelmts); + + if (ctx->ndims > 0) + init_acc_pos(ctx, total_size); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ctx->ndims:%d", ctx->ndims); + + /* The stripmine loop */ + HDmemset(hs_offset, 0, sizeof hs_offset); + HDmemset(zero, 0, sizeof zero); + + for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "stripmine read loop:%d", i); + /* Calculate the hyperslab size */ + if (ctx->ndims > 0) { + for (i = 0, hs_nelmts = 1; i < ctx->ndims; i++) { + hs_size[i] = MIN(total_size[i] - hs_offset[i], sm_size[i]); + ctx->p_max_idx[i] = ctx->p_min_idx[i] + hs_size[i]; + hs_nelmts *= hs_size[i]; + } - /* The stripmine loop */ - HDmemset(hs_offset, 0, sizeof hs_offset); - HDmemset(zero, 0, sizeof zero); - - for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) { - /* Calculate the hyperslab size */ - if (ctx->ndims > 0) { - for (i = 0, hs_nelmts = 1; i < ctx->ndims; i++) { - hs_size[i] = MIN(total_size[i] - hs_offset[i], sm_size[i]); - ctx->p_max_idx[i] = ctx->p_min_idx[i] + hs_size[i]; - hs_nelmts *= hs_size[i]; + if (H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sselect_hyperslab hs_offset failed"); + if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sselect_hyperslab zero failed"); + } + else { + if (H5Sselect_all(f_space) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sselect_all f_space failed"); + if (H5Sselect_all(sm_space) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sselect_all sm_space failed"); + hs_nelmts = 1; } - H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL); - H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL); - } - else { - H5Sselect_all(f_space); - H5Sselect_all(sm_space); - hs_nelmts = 1; - } - - /* Read the data */ - if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0) { - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dread failed"); - } - - /* Print the data */ - flags = (elmtno == 0) ? START_OF_DATA : 0; - flags |= ((elmtno + hs_nelmts) >= p_nelmts) ? END_OF_DATA : 0; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "Read the data"); + /* Read the data */ + if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) >= 0) { + /* Print the data */ + flags = (elmtno == 0) ? START_OF_DATA : 0; + flags |= ((elmtno + hs_nelmts) >= p_nelmts) ? END_OF_DATA : 0; - /* initialize the current stripmine position; this is necessary to print the array - indices */ - ctx->sm_pos = elmtno; + /* initialize the current stripmine position; this is necessary to print the array + indices */ + ctx->sm_pos = elmtno; - if(h5tools_dump_simple_data(stream, info, dset, ctx, flags, hs_nelmts, p_type, sm_buf) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "h5tools_dump_simple_data failed"); + if(h5tools_dump_simple_data(stream, info, dset, ctx, flags, hs_nelmts, p_type, sm_buf) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "h5tools_dump_simple_data failed"); - /* Reclaim any VL memory, if necessary */ - if (vl_data) - H5Treclaim(p_type, sm_space, H5P_DEFAULT, sm_buf); + /* Reclaim any VL memory, if necessary */ + if (vl_data) + H5Treclaim(p_type, sm_space, H5P_DEFAULT, sm_buf); - /* Calculate the next hyperslab offset */ - for (i = ctx->ndims, carry = 1; i > 0 && carry; --i) { - ctx->p_min_idx[i - 1] = ctx->p_max_idx[i - 1]; - hs_offset[i - 1] += hs_size[i - 1]; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "Calculate the next hyperslab offset"); + /* Calculate the next hyperslab offset */ + for (i = ctx->ndims, carry = 1; i > 0 && carry; --i) { + ctx->p_min_idx[i - 1] = ctx->p_max_idx[i - 1]; + hs_offset[i - 1] += hs_size[i - 1]; - if (hs_offset[i - 1] == total_size[i - 1]) - hs_offset[i - 1] = 0; + if (hs_offset[i - 1] == total_size[i - 1]) + hs_offset[i - 1] = 0; + else + carry = 0; + } + } else - carry = 0; - } - - ctx->continuation++; - } + H5TOOLS_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); -CATCH - if(sm_buf) + ctx->continuation++; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "stripmine read loop:%d complete", i); + } HDfree(sm_buf); - + } /* if (NULL != (sm_buf...)) */ done: if(sm_space >= 0 && H5Sclose(sm_space) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); if(f_space >= 0 && H5Sclose(f_space) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); - + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed"); +CATCH + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); return ret_value; } @@ -1682,25 +1812,27 @@ done: * * Return: Success: SUCCEED * Failure: FAIL - * *------------------------------------------------------------------------- */ static int h5tools_dump_simple_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t obj_id, hid_t type, hid_t space, void *mem) { - HERR_INIT(herr_t, SUCCEED) + H5TOOLS_ERR_INIT(herr_t, SUCCEED) int sndims; /* rank of dataspace */ unsigned i; /*counters */ hsize_t nelmts; /*total selected elmts */ + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); sndims = H5Sget_simple_extent_ndims(space); if(sndims < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_simple_extent_ndims failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_simple_extent_ndims failed"); ctx->ndims = (unsigned)sndims; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "sndims:%d", sndims); if ((size_t) ctx->ndims > NELMTS(ctx->p_min_idx)) - H5E_THROW(FAIL, H5E_tools_min_id_g, "ctx->ndims > NELMTS(ctx->p_min_idx) failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "ctx->ndims > NELMTS(ctx->p_min_idx) failed"); /* Assume entire data space to be printed */ for (i = 0; i < ctx->ndims; i++) @@ -1722,11 +1854,14 @@ h5tools_dump_simple_mem(FILE *stream, const h5tool_format_t *info, h5tools_conte if (ctx->ndims > 0) init_acc_pos(ctx, ctx->p_max_idx); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ctx->ndims:%d", ctx->ndims); if(h5tools_dump_simple_data(stream, info, obj_id, ctx, START_OF_DATA | END_OF_DATA, nelmts, type, mem) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "h5tools_dump_simple_data failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "h5tools_dump_simple_data failed"); CATCH + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); return ret_value; } @@ -1746,21 +1881,10 @@ CATCH * * Return: Success: SUCCEED * Failure: FAIL - * - * Modifications: - * Robb Matzke, 1999-06-07 - * If info->raw is set then the memory datatype will be the same - * as the file datatype. - * - * Bill Wendling, 2001-02-27 - * Renamed to ``h5tools_dump_dset'' and added the subsetting - * parameter. - * *------------------------------------------------------------------------- */ int -h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, - hid_t dset, struct subset_t *sset) +h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t dset) { hid_t f_space = -1; hid_t p_type = -1; @@ -1802,15 +1926,15 @@ h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t * /* Print the data */ if (space_type == H5S_SIMPLE || space_type == H5S_SCALAR) { - if(!sset) + if(!ctx->sset) status = h5tools_dump_simple_dset(rawdatastream, info, ctx, dset, p_type); else - status = h5tools_dump_simple_subset(rawdatastream, info, ctx, dset, p_type, sset); + status = h5tools_dump_simple_subset(rawdatastream, info, ctx, dset, p_type); } - else + else { /* space is H5S_NULL */ status = SUCCEED; - + } done: if (f_type > 0) H5Tclose(f_type); @@ -1831,14 +1955,13 @@ done: * * Return: Success: SUCCEED * Failure: FAIL - * *------------------------------------------------------------------------- */ int h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t obj_id, hid_t type, hid_t space, void *mem) { - HERR_INIT(int, SUCCEED) + H5TOOLS_ERR_INIT(int, SUCCEED) h5tool_format_t info_dflt; /* Use default values */ @@ -1852,7 +1975,7 @@ h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *c /* Check the data space */ if (H5Sis_simple(space) <= 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sis_simple failed") + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sis_simple failed") H5_LEAVE(h5tools_dump_simple_mem(rawattrstream, info, ctx, obj_id, type, space, mem)) @@ -1869,14 +1992,13 @@ CATCH * * In/Out: h5tools_str_t *buffer * h5tools_context_t *ctx - * *------------------------------------------------------------------------- */ int h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t type, int object_search) { - HERR_INIT(int, SUCCEED) + H5TOOLS_ERR_INIT(int, SUCCEED) char *mname; hid_t mtype = -1; hid_t str_type = -1; @@ -1900,7 +2022,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ const char *order_s = NULL; /* byte order string */ if((type_class = H5Tget_class(type)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_class failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_class failed"); if (object_search && H5Tcommitted(type) > 0) { H5O_info_t oinfo; obj_t *obj = NULL; /* Found object */ @@ -2190,11 +2312,11 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ order = H5Tget_order(tmp_type); if(order == H5T_ORDER_LE) { if(H5Tset_order(str_type, H5T_ORDER_LE) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); } /* end if */ else if(order == H5T_ORDER_BE) { if(H5Tset_order(str_type, H5T_ORDER_BE) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); } /* end if */ if(H5Tequal(tmp_type, str_type)) { @@ -2204,7 +2326,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ /* If not equal to C variable-length string, check Fortran type. */ if(H5Tclose(str_type) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); str_type = H5Tcopy(H5T_FORTRAN_S1); H5Tset_cset(str_type, cset); @@ -2221,11 +2343,11 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ order = H5Tget_order(tmp_type); if(order == H5T_ORDER_LE) { if(H5Tset_order(str_type, H5T_ORDER_LE) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); } /* end if */ else if(order == H5T_ORDER_BE) { if(H5Tset_order(str_type, H5T_ORDER_BE) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); } /* end if */ if(H5Tequal(tmp_type, str_type)) { @@ -2244,9 +2366,9 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_str_reset(buffer); if(H5Tclose(str_type) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); if(H5Tclose(tmp_type) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); h5tools_str_append(buffer, "%s", h5tools_dump_header_format->strblockend); break; @@ -2280,7 +2402,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ char *ttag; if(NULL == (ttag = H5Tget_tag(type))) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_tag failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_tag failed"); ctx->need_prefix = TRUE; @@ -2308,7 +2430,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ case H5T_COMPOUND: if((snmembers = H5Tget_nmembers(type)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed"); nmembers = (unsigned)snmembers; h5tools_str_append(buffer, "H5T_COMPOUND %s", h5tools_dump_header_format->structblockbegin); @@ -2326,10 +2448,10 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_str_append(buffer, " \"%s\";", mname); h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); if(H5Tclose(mtype) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); } else - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_member_type failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_member_type failed"); H5free_memory(mname); } ctx->indent_level--; @@ -2350,13 +2472,15 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ } else if (H5Tequal(type, H5T_STD_REF) == TRUE) { h5tools_str_append(buffer, " { H5T_STD_REF }"); - } else + } + else { h5tools_str_append(buffer, " { UNDEFINED }"); + } break; case H5T_ENUM: if((super = H5Tget_super(type)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_super failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_super failed"); h5tools_str_append(buffer, "H5T_ENUM %s", h5tools_dump_header_format->enumblockbegin); h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -2368,7 +2492,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_print_datatype(stream, buffer, info, ctx, super, TRUE); if(H5Tclose(super) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); h5tools_str_append(buffer, ";"); h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -2386,14 +2510,14 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ case H5T_VLEN: if((super = H5Tget_super(type)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_super failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_super failed"); h5tools_str_append(buffer, "H5T_VLEN %s ", h5tools_dump_header_format->vlenblockbegin); h5tools_print_datatype(stream, buffer, info, ctx, super, TRUE); if(H5Tclose(super) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); h5tools_str_append(buffer, "%s", h5tools_dump_header_format->vlenblockend); @@ -2414,10 +2538,10 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_str_append(buffer, " "); } else - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_array_dims2 failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_array_dims2 failed"); } else - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_array_ndims failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_array_ndims failed"); /* Get array base type */ if((super = H5Tget_super(type)) >= 0) { @@ -2425,10 +2549,10 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_print_datatype(stream, buffer, info, ctx, super, TRUE); /* Close array base type */ if(H5Tclose(super) < 0) - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); } else - HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_super failed"); + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_super failed"); h5tools_str_append(buffer, " }"); @@ -2454,13 +2578,12 @@ CATCH * * In/Out: h5tools_str_t *buffer * h5tools_context_t *ctx - * *------------------------------------------------------------------------- */ int h5tools_print_dataspace(h5tools_str_t *buffer, hid_t space) { - HERR_INIT(int, SUCCEED) + H5TOOLS_ERR_INIT(int, SUCCEED) hsize_t size[H5TOOLS_DUMP_MAX_RANK]; hsize_t maxsize[H5TOOLS_DUMP_MAX_RANK]; int ndims = -1; @@ -2468,10 +2591,10 @@ h5tools_print_dataspace(h5tools_str_t *buffer, hid_t space) int i; if((ndims = H5Sget_simple_extent_dims(space, size, maxsize)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); if((space_type = H5Sget_simple_extent_type(space)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_type failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_type failed"); switch(space_type) { case H5S_SCALAR: @@ -2534,10 +2657,9 @@ CATCH * *-----------------------------------------------------------------------*/ int -h5tools_print_enum(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *info, - h5tools_context_t *ctx, hid_t type) +h5tools_print_enum(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t type) { - HERR_INIT(int, SUCCEED) + H5TOOLS_ERR_INIT(int, SUCCEED) char **name = NULL; /*member names */ unsigned char *value = NULL; /*value array */ unsigned char *copy = NULL; /*a pointer to value array */ @@ -2556,15 +2678,15 @@ h5tools_print_enum(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *i ncols = info->line_ncols; if((snmembs = H5Tget_nmembers(type)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed"); nmembs = (unsigned)snmembs; HDassert(nmembs > 0); if((super = H5Tget_super(type)) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_super failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_super failed"); if((type_size = H5Tget_size(type)) <= 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size(type) failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size(type) failed"); /* * Determine what datatype to use for the native values. To simplify @@ -2577,7 +2699,7 @@ h5tools_print_enum(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *i dst_size = sizeof(long long); if((sign_type = H5Tget_sign(type))<0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_sign failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_sign failed"); if(H5T_SGN_NONE == sign_type) native = H5T_NATIVE_ULLONG; else @@ -2588,20 +2710,20 @@ h5tools_print_enum(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *i /* Get the names and raw values of all members */ if(NULL == (name = (char **)HDcalloc((size_t)nmembs, sizeof(char *)))) - H5E_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for member name"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for member name"); if(NULL == (value = (unsigned char *)HDcalloc((size_t)nmembs, MAX(type_size, dst_size)))) - H5E_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for member value"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for member value"); for (i = 0; i < nmembs; i++) { name[i] = H5Tget_member_name(type, i); if(H5Tget_member_value(type, i, value + i * type_size) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_member_value failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_member_value failed"); } /* Convert values to native datatype */ if (native > 0) if(H5Tconvert(super, native, (size_t)nmembs, value, NULL, H5P_DEFAULT) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tconvert failed"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "H5Tconvert failed"); /* * Sort members by increasing value @@ -2658,7 +2780,7 @@ CATCH HDfree(value); if(super >= 0 && H5Tclose(super) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "Could not close datatype's super class"); + H5TOOLS_THROW(FAIL, H5E_tools_min_id_g, "Could not close datatype's super class"); if(0 == nmembs) h5tools_str_append(buffer, "\n<empty>"); @@ -2678,8 +2800,7 @@ CATCH *------------------------------------------------------------------------- */ void -h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hid_t type) +h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t type) { h5tools_str_t buffer; /* string into which to render */ size_t ncols = 80; /* available output width */ @@ -2726,8 +2847,7 @@ h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ void -h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hid_t type) +h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t type) { h5tools_str_t buffer; /* string into which to render */ size_t ncols = 80; /* available output width */ @@ -2775,8 +2895,7 @@ h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ void -h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hid_t oid) +h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t oid) { h5tools_str_t buffer; /* string into which to render */ size_t ncols = 80; /* available output width */ @@ -2810,11 +2929,10 @@ h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ static void -h5tools_print_virtual_selection(hid_t vspace, - FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, - h5tools_str_t *buffer/*string into which to render */, - hsize_t *curr_pos/*total data element position*/, +h5tools_print_virtual_selection(hid_t vspace, FILE *stream, const h5tool_format_t *info, + h5tools_context_t *ctx, /* in,out*/ + h5tools_str_t *buffer, /* string into which to render */ + hsize_t *curr_pos, /* total data element position */ size_t ncols) { switch(H5Sget_select_type(vspace)) { @@ -2881,7 +2999,8 @@ h5tools_print_virtual_selection(hid_t vspace, *------------------------------------------------------------------------- */ void -h5tools_print_fill_value(h5tools_str_t *buffer/*in,out*/, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t dcpl, hid_t type_id, hid_t obj_id) +h5tools_print_fill_value(h5tools_str_t *buffer/*in,out*/, const h5tool_format_t *info, + h5tools_context_t *ctx/*in,out*/, hid_t dcpl, hid_t type_id, hid_t obj_id) { size_t size; hid_t n_type = -1; @@ -3367,7 +3486,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, } /*i*/ }/*nfilters*/ else { - ctx->need_prefix = TRUE; h5tools_str_reset(&buffer); @@ -3502,12 +3620,10 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, * Purpose: prints the comment for the the object name * * Return: void - * *------------------------------------------------------------------------- */ void -h5tools_dump_comment(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hid_t obj_id) +h5tools_dump_comment(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t obj_id) { char *comment = NULL; ssize_t cmt_bufsize = -1; @@ -3561,9 +3677,7 @@ h5tools_dump_comment(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ void -h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, const char *attr_name, hid_t attr_id, - int display_index, int display_char) +h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, const char *attr_name, hid_t attr_id) { h5tools_str_t buffer; /* string into which to render */ size_t ncols = 80; /* available output width */ @@ -3606,7 +3720,7 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, h5tools_dump_oid(stream, info, ctx, attr_id); if(data_output || attr_data_output) - h5tools_dump_data(stream, info, ctx, attr_id, FALSE, NULL, display_index, display_char); + h5tools_dump_data(stream, info, ctx, attr_id, FALSE); ctx->indent_level--; @@ -3638,12 +3752,6 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, * Purpose: Dump the dimensions handed to it in a comma separated list * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 27. February 2001 - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -3665,7 +3773,6 @@ h5tools_print_dims(h5tools_str_t *buffer, hsize_t *s, int dims) * Purpose: Prints the packed bits offset and length * * Return: void - * *------------------------------------------------------------------------- */ void @@ -3712,17 +3819,10 @@ h5tools_print_packed_bits(h5tools_str_t *buffer, hid_t type) * Purpose: Dump the subsetting header like specified in the DDL. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 27. February 2001 - * - * Modifications: - * *------------------------------------------------------------------------- */ void -h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, struct subset_t *sset, int dims) +h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, int dims) { h5tools_str_t buffer; /* string into which to render */ hsize_t curr_pos = 0; /* total data element position */ @@ -3745,7 +3845,7 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->startbegin, h5tools_dump_header_format->startblockbegin); - h5tools_print_dims(&buffer, sset->start.data, dims); + h5tools_print_dims(&buffer, ctx->sset->start.data, dims); h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->startend, h5tools_dump_header_format->startblockend); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3753,7 +3853,7 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->stridebegin, h5tools_dump_header_format->strideblockbegin); - h5tools_print_dims(&buffer, sset->stride.data, dims); + h5tools_print_dims(&buffer, ctx->sset->stride.data, dims); h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->strideend, h5tools_dump_header_format->strideblockend); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3762,8 +3862,8 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->countbegin, h5tools_dump_header_format->countblockbegin); - if(sset->count.data) - h5tools_print_dims(&buffer, sset->count.data, dims); + if(ctx->sset->count.data) + h5tools_print_dims(&buffer, ctx->sset->count.data, dims); else h5tools_str_append(&buffer, "DEFAULT"); @@ -3775,8 +3875,8 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->blockbegin, h5tools_dump_header_format->blockblockbegin); - if(sset->block.data) - h5tools_print_dims(&buffer, sset->block.data, dims); + if(ctx->sset->block.data) + h5tools_print_dims(&buffer, ctx->sset->block.data, dims); else h5tools_str_append(&buffer, "DEFAULT"); @@ -3791,34 +3891,40 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, /*------------------------------------------------------------------------- * Function: dump_data * - * Purpose: Dump attribute or dataset data + * Purpose: Dump attribute, obj_data is FALSE, or dataset data, obj_data is TRUE * * Return: void - * *------------------------------------------------------------------------- */ void -h5tools_dump_data(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hid_t obj_id, int obj_data, struct subset_t *sset, - int display_index, int display_char) +h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t obj_id, int obj_data) { + H5TOOLS_ERR_INIT(int, SUCCEED); H5S_class_t space_type; int ndims; - int i; - hid_t space = -1; - hid_t type = -1; - hid_t p_type = -1; + size_t i; + hid_t space = H5I_INVALID_HID; + hid_t p_type = H5I_INVALID_HID; + hid_t f_type = H5I_INVALID_HID; + hid_t new_obj_id = H5I_INVALID_HID; + hid_t new_obj_sid = H5I_INVALID_HID; + hsize_t total_size[H5S_MAX_RANK]; hsize_t size[64]; hsize_t alloc_size; hsize_t nelmts = 1; + hsize_t elmt_counter = 0; /*counts the # elements printed. */ int status = -1; void *buf = NULL; - h5tools_str_t buffer; /* string into which to render */ - hsize_t curr_pos = 0; /* total data element position */ - size_t ncols = 80; /* available output width */ - h5tool_format_t string_dataformat; - h5tool_format_t outputformat; - + hbool_t dimension_break; + h5tools_str_t buffer; /* string into which to render */ + hsize_t curr_pos = 0; /* total data element position */ + size_t ncols = 80; /* available output width */ + h5tool_format_t string_dataformat; + h5tool_format_t outputformat; + H5R_ref_t *ref_buf = NULL; + + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); /* setup */ HDmemset(&buffer, 0, sizeof(h5tools_str_t)); if (info->line_ncols > 0) @@ -3827,26 +3933,17 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, outputformat = *info; string_dataformat = *info; /* print the matrix indices */ - string_dataformat.pindex = display_index; + string_dataformat.pindex = ctx->display_index; - /* do not print indices for regions */ if(obj_data) { - hid_t f_type = H5Dget_type(obj_id); - - if (H5Tequal(f_type, H5T_STD_REF_DSETREG)) { - /* For the region option, correct the display of indices */ - if (region_output) { - if (!string_dataformat.pindex) { - string_dataformat.idx_fmt = ""; - string_dataformat.idx_n_fmt = ""; - string_dataformat.idx_sep = ""; - string_dataformat.line_pre = ""; - } - } - else - string_dataformat.pindex = 0; - } - H5Tclose(f_type); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "dataset"); + f_type = H5Dget_type(obj_id); + space = H5Dget_space(obj_id); + } + else { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "attribute"); + f_type = H5Aget_type(obj_id); + space = H5Aget_space(obj_id); } if (string_dataformat.pindex) { @@ -3857,11 +3954,9 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, } info = &string_dataformat; - if (sset && obj_data) { - hid_t f_space = H5Dget_space(obj_id); + if (ctx->sset && obj_data) { - h5tools_dump_subsetting_header(stream, &outputformat, ctx, sset, H5Sget_simple_extent_ndims(f_space)); - H5Sclose(f_space); + h5tools_dump_subsetting_header(stream, &outputformat, ctx, H5Sget_simple_extent_ndims(space)); ctx->indent_level++; } @@ -3871,135 +3966,372 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->databegin, h5tools_dump_header_format->datablockbegin); h5tools_render_element(stream, &outputformat, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - /* Print all the values. */ - if(obj_data) { + if (H5Tget_class(f_type) == H5T_REFERENCE) { h5tools_context_t datactx = *ctx; /* print context */ - hid_t f_type = H5Dget_type(obj_id); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "reference class type"); + if (!H5Tequal(f_type, H5T_STD_REF) && !H5Tequal(f_type, H5T_STD_REF_DSETREG) && !H5Tequal(f_type, H5T_STD_REF_OBJ)) { + HGOTO_DONE(SUCCEED); + } - if((display_char && H5Tget_size(f_type) == 1) && (H5Tget_class(f_type) == H5T_INTEGER)) { - /* - * Print 1-byte integer data as an ASCII character string - * instead of integers if the `-r' or `--string' command-line - * option was given. - * - * We don't want to modify the global dataformat, so make a - * copy of it instead. - */ - string_dataformat = *info; - string_dataformat.idx_fmt = "\""; - info = &string_dataformat; - datactx.indent_level++; - datactx.need_prefix = TRUE; - h5tools_simple_prefix(stream, info, &datactx, (hsize_t)0, 0); + ndims = (int)H5Sget_simple_extent_npoints(space); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ndims=%d - datactx.ndims=%d", ndims, datactx.ndims); - string_dataformat = *info; - string_dataformat.idx_fmt = "\""; - string_dataformat.line_multi_new = 1; - string_dataformat.str_repeat = 8; - string_dataformat.ascii = TRUE; - string_dataformat.elmt_suf1 = ""; - string_dataformat.elmt_suf2 = ""; - string_dataformat.line_suf = "\""; - info = &string_dataformat; - } - else - datactx.need_prefix = TRUE; - status = h5tools_dump_dset(stream, info, &datactx, obj_id, sset); - if((display_char && H5Tget_size(f_type) == 1) && (H5Tget_class(f_type) == H5T_INTEGER)) { - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "\""); - h5tools_render_element(stream, &outputformat, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + /* Assume entire data space to be printed */ + if (datactx.ndims > 0) + for (i = 0; i < (size_t)datactx.ndims; i++) + datactx.p_min_idx[i] = 0; + + H5Sget_simple_extent_dims(space, total_size, NULL); + if (datactx.ndims > 0) + init_acc_pos(&datactx, total_size); + datactx.need_prefix = TRUE; + + if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), ndims))) { + if(obj_data) { + if(H5Dread(obj_id, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, ref_buf) < 0) { + HDfree(ref_buf); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread reference failed"); + } + } + else { + if(H5Aread(obj_id, H5T_STD_REF, ref_buf) < 0) { + HDfree(ref_buf); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread reference failed"); + } + } + for(i = 0; i < ndims; i++, datactx.cur_elmt++, elmt_counter++) { + H5O_type_t obj_type; /* Object type */ + H5R_type_t ref_type; /* Reference type */ + + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "reference loop:%d with curr_pos=%ld", i, curr_pos); + + datactx.need_prefix = TRUE; + h5tools_str_reset(&buffer); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "reference loop - h5tools_str_sprint with H5T_STD_REF:%d", i); + h5tools_str_sprint(&buffer, &outputformat, obj_id, H5T_STD_REF, &ref_buf[i], &datactx); + h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, (hsize_t)ndims); + + ref_type = H5Rget_type((const H5R_ref_t *)&ref_buf[i]); + switch (ref_type) { + case H5R_OBJECT1: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_OBJECT1"); + if (H5Rget_obj_type3((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_DATASET: + if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + datactx.indent_level++; + h5tools_dump_data(stream, &outputformat, &datactx, new_obj_id, TRUE); + datactx.indent_level--; + if(H5Dclose(new_obj_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dclose H5R_OBJECT1:H5O_TYPE_DATASET failed"); + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rdestroy H5R_OBJECT1:H5O_TYPE_DATASET failed"); + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Ropen_object H5R_OBJECT1:H5O_TYPE_DATASET failed"); + break; + + case H5O_TYPE_GROUP: + case H5O_TYPE_NAMED_DATATYPE: + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + break; + } /* end switch */ + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rget_obj_type3 H5R_OBJECT1 failed"); + break; + case H5R_DATASET_REGION1: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_DATASET_REGION1"); + if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + datactx.indent_level++; + h5tools_dump_data(stream, &outputformat, &datactx, new_obj_id, TRUE); + datactx.indent_level--; + if(H5Dclose(new_obj_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dclose H5R_DATASET_REGION1 failed"); + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rdestroy H5R_DATASET_REGION1 failed"); + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Ropen_object H5R_DATASET_REGION1 failed"); + break; + case H5R_OBJECT2: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_OBJECT2"); + if (H5Rget_obj_type3((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_GROUP: + break; + + case H5O_TYPE_DATASET: + if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + datactx.indent_level++; + h5tools_dump_data(stream, &outputformat, &datactx, new_obj_id, TRUE); + datactx.indent_level--; + if(H5Oclose(new_obj_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Oclose H5R_OBJECT2 failed"); + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rdestroy H5R_OBJECT2 failed"); + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Ropen_object H5R_OBJECT2 failed"); + break; + + case H5O_TYPE_NAMED_DATATYPE: + break; + + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + break; + } /* end switch */ + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rget_obj_type3 H5R_OBJECT2 failed"); + break; + case H5R_DATASET_REGION2: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_DATASET_REGION2"); + + if (outputformat.line_ncols > 0) + ncols = outputformat.line_ncols; + + /* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */ + if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0) + H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, H5E_tools_min_id_g, + "H5Ropen_object H5R_DATASET_REGION2 failed"); + else { + if((new_obj_sid = H5Ropen_region((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "NULL H5R_DATASET_REGION2"); + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " {"); + h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + + datactx.indent_level++; + datactx.need_prefix = TRUE; + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "NULL"); + h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + + datactx.indent_level--; + datactx.need_prefix = TRUE; + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "}"); + h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } + else { + H5S_sel_type region_type; + + region_type = H5Sget_select_type(new_obj_sid); + if(region_type == H5S_SEL_POINTS) { + /* Print point information */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5S_SEL_POINTS H5R_DATASET_REGION2"); + dimension_break = h5tools_dump_region_data_points(new_obj_sid, new_obj_id, stream, &outputformat, &datactx, + &buffer, &curr_pos, ncols, i, elmt_counter); + } + else if(region_type == H5S_SEL_HYPERSLABS) { + /* Print block information */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5S_SEL_HYPERSLABS H5R_DATASET_REGION2"); + dimension_break = h5tools_dump_region_data_blocks(new_obj_sid, new_obj_id, stream, &outputformat, &datactx, + &buffer, &curr_pos, ncols, i, elmt_counter); + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "invalid region type"); + } /* end else to if (h5tools_is_zero(... */ + if(H5Sclose(new_obj_sid) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose H5R_DATASET_REGION2 failed"); + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Ropen_region H5R_DATASET_REGION2 failed"); + if(H5Dclose(new_obj_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dclose H5R_DATASET_REGION2 failed"); + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rdestroy H5R_DATASET_REGION2 failed"); + } + break; + case H5R_ATTR: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_ATTR"); + if((new_obj_id = H5Ropen_attr((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + dimension_break = h5tools_dump_region_attribute(new_obj_id, stream, &outputformat, &datactx, + &buffer, &curr_pos, ncols, i, elmt_counter); + if(H5Aclose(new_obj_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Aclose H5R_ATTR failed"); + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rdestroy H5R_ATTR failed"); + } + else { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "NULL H5R_ATTR"); + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " {"); + h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + + datactx.indent_level++; + datactx.need_prefix = TRUE; + + datactx.indent_level++; + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "NULL"); + h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + datactx.indent_level--; + + datactx.indent_level--; + datactx.need_prefix = TRUE; + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "}"); + h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Ropen_attr H5R_ATTR failed"); + } + break; + case H5R_BADTYPE: + case H5R_MAXTYPE: + default: + break; + } /* end switch */ + + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "finished reference loop:%d",i); + } /* end for(i = 0; i < ndims; i++, ctx->cur_elmt++, elmt_counter++) */ + HDfree(ref_buf); } - H5Tclose(f_type); } else { - h5tools_context_t datactx = *ctx; /* print context */ - /* need to call h5tools_dump_mem for the attribute data */ - space = H5Aget_space(obj_id); - space_type = H5Sget_simple_extent_type(space); - if(space_type == H5S_NULL || space_type == H5S_NO_CLASS) { - status = SUCCEED; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "Print all the values"); + + /* Print all the values. */ + if(obj_data) { + h5tools_context_t datactx = *ctx; /* print context */ + string_dataformat = *info; + + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "Print all the dataset values"); + if((datactx.display_char && H5Tget_size(f_type) == 1) && (H5Tget_class(f_type) == H5T_INTEGER)) { + /* + * Print 1-byte integer data as an ASCII character string + * instead of integers if the `-r' or `--string' command-line + * option was given. + * + * We don't want to modify the global dataformat, so make a + * copy of it instead. + */ + string_dataformat.idx_fmt = "\""; + datactx.indent_level++; + datactx.need_prefix = TRUE; + h5tools_simple_prefix(stream, &string_dataformat, &datactx, (hsize_t)0, 0); + + string_dataformat.line_multi_new = 1; + string_dataformat.str_repeat = 8; + string_dataformat.ascii = TRUE; + string_dataformat.elmt_suf1 = ""; + string_dataformat.elmt_suf2 = ""; + string_dataformat.line_suf = "\""; + } + else { + datactx.need_prefix = TRUE; + } + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "h5tools_dump_dset"); + status = h5tools_dump_dset(stream, &string_dataformat, &datactx, obj_id); + if((datactx.display_char && H5Tget_size(f_type) == 1) && (H5Tget_class(f_type) == H5T_INTEGER)) { + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "\""); + h5tools_render_element(stream, &string_dataformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } } else { - /* VL data special information */ - unsigned int vl_data = 0; /* contains VL datatypes */ - - type = H5Aget_type(obj_id); - p_type = H5Tget_native_type(type, H5T_DIR_DEFAULT); - - ndims = H5Sget_simple_extent_dims(space, size, NULL); - - /* Check if we have VL data in the dataset's datatype */ - if (h5tools_detect_vlen(p_type) == TRUE) - vl_data = TRUE; - - for (i = 0; i < ndims; i++) - nelmts *= size[i]; - - alloc_size = nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type)); - HDassert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/ - - if(alloc_size) { - buf = HDmalloc((size_t)alloc_size); - HDassert(buf); - - if (H5Aread(obj_id, p_type, buf) >= 0) { - if (display_char && H5Tget_size(type) == 1 && H5Tget_class(type) == H5T_INTEGER) { - /* - * Print 1-byte integer data as an ASCII character string - * instead of integers if the `-r' or `--string' command-line - * option was given. - * - * We don't want to modify the global dataformat, so make a - * copy of it instead. - */ - string_dataformat = *info; - string_dataformat.idx_fmt = "\""; - info = &string_dataformat; - datactx.indent_level++; - datactx.need_prefix = TRUE; - h5tools_simple_prefix(stream, info, &datactx, (hsize_t)0, 0); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "Print all the attribute values"); + + h5tools_context_t datactx = *ctx; /* print context */ + /* need to call h5tools_dump_mem for the attribute data */ + space_type = H5Sget_simple_extent_type(space); + if(space_type == H5S_NULL || space_type == H5S_NO_CLASS) { + status = SUCCEED; + } + else { + /* VL data special information */ + unsigned int vl_data = 0; /* contains VL datatypes */ + + p_type = H5Tget_native_type(f_type, H5T_DIR_DEFAULT); + + ndims = H5Sget_simple_extent_dims(space, size, NULL); + /* Check if we have VL data in the dataset's datatype */ + if (h5tools_detect_vlen(p_type) == TRUE) + vl_data = TRUE; + + for (i = 0; i < ndims; i++) + nelmts *= size[i]; + + alloc_size = nelmts * MAX(H5Tget_size(f_type), H5Tget_size(p_type)); + HDassert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/ + + if (alloc_size) { + buf = HDmalloc((size_t)alloc_size); + HDassert(buf); + + if (H5Aread(obj_id, p_type, buf) >= 0) { string_dataformat = *info; - string_dataformat.idx_fmt = "\""; - string_dataformat.line_multi_new = 1; - string_dataformat.str_repeat = 8; - string_dataformat.ascii = TRUE; - string_dataformat.elmt_suf1 = ""; - string_dataformat.elmt_suf2 = ""; - string_dataformat.line_suf = "\""; - info = &string_dataformat; + if (datactx.display_char && H5Tget_size(f_type) == 1 && H5Tget_class(f_type) == H5T_INTEGER) { + /* + * Print 1-byte integer data as an ASCII character string + * instead of integers if the `-r' or `--string' command-line + * option was given. + * + * We don't want to modify the global dataformat, so make a + * copy of it instead. + */ + string_dataformat.idx_fmt = "\""; + datactx.indent_level++; + datactx.need_prefix = TRUE; + h5tools_simple_prefix(stream, &string_dataformat, &datactx, (hsize_t)0, 0); + + string_dataformat.line_multi_new = 1; + string_dataformat.str_repeat = 8; + string_dataformat.ascii = TRUE; + string_dataformat.elmt_suf1 = ""; + string_dataformat.elmt_suf2 = ""; + string_dataformat.line_suf = "\""; + } + else + datactx.need_prefix = TRUE; + + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "call h5tools_dump_mem"); + status = h5tools_dump_mem(stream, &string_dataformat, &datactx, obj_id, p_type, space, buf); + if (datactx.display_char && H5Tget_size(f_type) == 1 && H5Tget_class(f_type) == H5T_INTEGER) { + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "\""); + h5tools_render_element(stream, &string_dataformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } } else - datactx.need_prefix = TRUE; - } - - status = h5tools_dump_mem(stream, info, &datactx, obj_id, p_type, space, buf); - if (display_char && H5Tget_size(type) == 1 && H5Tget_class(type) == H5T_INTEGER) { - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "\""); - h5tools_render_element(stream, &outputformat, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - } + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Aread failed"); - /* Reclaim any VL memory, if necessary */ - if (vl_data) - H5Treclaim(p_type, space, H5P_DEFAULT, buf); + /* Reclaim any VL memory, if necessary */ + if (vl_data) + H5Treclaim(p_type, space, H5P_DEFAULT, buf); - HDfree(buf); + HDfree(buf); + } + else { + status = SUCCEED; + } /* end if (alloc_size) */ + H5Tclose(p_type); } - else - status = SUCCEED; - - H5Tclose(p_type); - H5Tclose(type); } - H5Sclose(space); - } + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "Print all the values Complete"); - if (status == FAIL) { - error_msg("unable to print data\n"); - h5tools_setstatus(EXIT_FAILURE); + if (status == FAIL) { + error_msg("unable to print data\n"); + h5tools_setstatus(EXIT_FAILURE); + } } +done: + H5Sclose(space); + H5Tclose(f_type); ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, &outputformat, ctx, (hsize_t)0, 0); @@ -4010,11 +4342,12 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, if(HDstrlen(h5tools_dump_header_format->dataend)) h5tools_str_append(&buffer, " "); } + if(HDstrlen(h5tools_dump_header_format->dataend)) h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->dataend); h5tools_render_element(stream, &outputformat, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - if (sset && obj_data) { + if (ctx->sset && obj_data) { ctx->indent_level--; ctx->need_prefix = TRUE; @@ -4032,5 +4365,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, } h5tools_str_close(&buffer); + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); } diff --git a/tools/lib/h5tools_dump.h b/tools/lib/h5tools_dump.h index dc79f43..5275565 100644 --- a/tools/lib/h5tools_dump.h +++ b/tools/lib/h5tools_dump.h @@ -37,8 +37,7 @@ H5TOOLS_DLLVAR table_t *h5dump_type_table; /*type table reference for datatype H5TOOLS_DLL void h5tools_dump_init(void); H5TOOLS_DLL int h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, hid_t dset, - struct subset_t *sset); + h5tools_context_t *ctx/*in,out*/, hid_t dset); H5TOOLS_DLL int h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t obj_id, hid_t type, hid_t space, void *mem); @@ -50,8 +49,7 @@ H5TOOLS_DLL void h5tools_dump_datatype(FILE *stream, const h5tool_format_t *i H5TOOLS_DLL void h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t space); H5TOOLS_DLL void h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, const char *attr_name, - hid_t attr_id, int display_index, int display_char); + h5tools_context_t *ctx/*in,out*/, const char *attr_name, hid_t attr_id); H5TOOLS_DLL void h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t oid); H5TOOLS_DLL void h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, @@ -59,8 +57,30 @@ H5TOOLS_DLL void h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, H5TOOLS_DLL void h5tools_dump_comment(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t obj_id); H5TOOLS_DLL void h5tools_dump_data(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hid_t obj_id, - int obj_data, struct subset_t *sset, int display_index, int display_char); + h5tools_context_t *ctx, hid_t obj_id, int obj_data); +H5TOOLS_DLL hbool_t h5tools_dump_region_attribute(hid_t region_id, + FILE *stream, const h5tool_format_t *info, + h5tools_context_t *ctx/*in,out*/, + h5tools_str_t *buffer/*string into which to render */, + hsize_t *curr_pos/*total data element position*/, + size_t ncols, hsize_t region_elmt_counter/*element counter*/, + hsize_t elmt_counter); + +H5TOOLS_DLL hbool_t h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, + FILE *stream, const h5tool_format_t *info, + h5tools_context_t *ctx/*in,out*/, + h5tools_str_t *buffer/*string into which to render */, + hsize_t *curr_pos/*total data element position*/, + size_t ncols, hsize_t region_elmt_counter/*element counter*/, + hsize_t elmt_counter); + +H5TOOLS_DLL hbool_t h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id, + FILE *stream, const h5tool_format_t *info, + h5tools_context_t *ctx/*in,out*/, + h5tools_str_t *buffer/*string into which to render */, + hsize_t *curr_pos/*total data element position*/, + size_t ncols, hsize_t region_elmt_counter/*element counter*/, + hsize_t elmt_counter); H5TOOLS_DLL int h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer/*in,out*/, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, @@ -71,7 +91,7 @@ H5TOOLS_DLL int h5tools_print_enum(FILE *stream, h5tools_str_t *buffer/*in,o const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t type); H5TOOLS_DLL void h5tools_print_fill_value(h5tools_str_t *buffer/*in,out*/, - const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t dcpl, hid_t type_id, hid_t obj_id); H5TOOLS_DLL void h5tools_print_packed_bits(h5tools_str_t *buffer/*in,out*/, hid_t type); #ifdef __cplusplus diff --git a/tools/lib/h5tools_error.h b/tools/lib/h5tools_error.h index 2cdaf74..2c5e6c9 100644 --- a/tools/lib/h5tools_error.h +++ b/tools/lib/h5tools_error.h @@ -18,12 +18,15 @@ #define H5TOOLS_ERROR_H_ #include "H5Epublic.h" +#include "H5Eprivate.h" /* Error handling */ /* tools-HDF5 Error variables */ H5TOOLS_DLLVAR hid_t H5tools_ERR_STACK_g; H5TOOLS_DLLVAR hid_t H5tools_ERR_CLS_g; H5TOOLS_DLLVAR hid_t H5E_tools_g; H5TOOLS_DLLVAR hid_t H5E_tools_min_id_g; +H5TOOLS_DLLVAR hid_t H5E_tools_min_info_id_g; +H5TOOLS_DLLVAR hid_t H5E_tools_min_dbg_id_g; /* Use FUNC to safely handle variations of C99 __func__ keyword handling */ #ifdef H5_HAVE_C99_FUNC @@ -39,41 +42,84 @@ H5TOOLS_DLLVAR hid_t H5E_tools_min_id_g; */ #define H5TOOLS_INIT_ERROR() { \ H5tools_ERR_CLS_g = H5Eregister_class("H5tools", "HDF5:tools", lib_str); \ - H5E_tools_g= H5Ecreate_msg(H5tools_ERR_CLS_g, H5E_MAJOR, "Failure in tools library"); \ + H5E_tools_g = H5Ecreate_msg(H5tools_ERR_CLS_g, H5E_MAJOR, "Failure in tools library"); \ H5E_tools_min_id_g = H5Ecreate_msg(H5tools_ERR_CLS_g, H5E_MINOR, "error in function"); \ + H5E_tools_min_info_id_g = H5Ecreate_msg(H5tools_ERR_CLS_g, H5E_MINOR, "function info"); \ + H5E_tools_min_dbg_id_g = H5Ecreate_msg(H5tools_ERR_CLS_g, H5E_MINOR, "function debug"); \ } /* * H5TOOLS_CLOSE_ERROR macro, used to initialize error reporting. */ #define H5TOOLS_CLOSE_ERROR() { \ + H5Eclose_msg(H5E_tools_min_dbg_id_g); \ + H5Eclose_msg(H5E_tools_min_info_id_g); \ H5Eclose_msg(H5E_tools_min_id_g); \ H5Eclose_msg(H5E_tools_g); \ H5Eunregister_class(H5tools_ERR_CLS_g); \ } /* - * HERR_INIT macro, used to facilitate error reporting. Declaration and assignments of error variables. + * H5TOOLS_ERR_INIT macro, used to facilitate error reporting. Declaration and assignments of error variables. * Use at the beginning of a function using error handling macros. */ -#define HERR_INIT(ret_typ, ret_init) \ - hbool_t past_catch = FALSE; \ +#define H5TOOLS_ERR_INIT(ret_typ, ret_init) \ + hid_t pstack_id = H5I_INVALID_HID; \ + hid_t estack_id = H5tools_ERR_STACK_g; \ + hbool_t past_catch = FALSE; \ ret_typ ret_value = ret_init; +/* + * H5TOOLS_PUSH_STACK macro, used to create a new error stack. + */ +#define H5TOOLS_PUSH_STACK() { \ + pstack_id = estack_id; \ + estack_id = H5Ecreate_stack(); \ +} /* - * H5TOOLS_INFO macro, used to facilitate error reporting . The arguments are the major - * error number, the minor error number, and a description of the error. + * H5TOOLS_POP_STACK macro, used to release a new error stack. + */ +#define H5TOOLS_POP_STACK() { \ + if (H5I_INVALID_HID != pstack_id) { \ + H5Eclose_stack(estack_id); \ + estack_id = pstack_id; \ + pstack_id = H5I_INVALID_HID; \ + } \ +} + +/* + * H5TOOLS_DEBUG macro, used to facilitate error reporting. The arguments are the minor error number, and a description of the error. + */ +#ifdef H5_TOOLS_DEBUG +#define H5TOOLS_DEBUG(min_id, ...) { \ + H5Epush2(estack_id, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, min_id, __VA_ARGS__); \ +} +#define H5TOOLS_ENDDEBUG(min_id, ...) { \ + H5Epush2(estack_id, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, min_id, __VA_ARGS__); \ + H5Eprint2(estack_id, stderr); \ +} +#else +#define H5TOOLS_DEBUG(min_id, ...) { \ + ; \ +} +#define H5TOOLS_ENDDEBUG(min_id, ...) { \ + ; \ +} +#endif + +/* + * H5TOOLS_INFO macro, used to facilitate error reporting . The arguments are the minor error number, and a description of the error. */ #define H5TOOLS_INFO(min_id, ...) { \ H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, min_id, __VA_ARGS__); \ } /* - * HERROR macro, used to facilitate error reporting . The arguments are the major + * H5TOOLS_ERROR macro, used to facilitate error reporting . The arguments are the major * error number, the minor error number, and a description of the error. */ -#define HERROR(maj_id, min_id, ...) { \ +#define H5TOOLS_ERROR(maj_id, min_id, ...) { \ H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, maj_id, min_id, __VA_ARGS__); \ ret_value = FAIL; \ } @@ -82,7 +128,7 @@ H5TOOLS_DLLVAR hid_t H5E_tools_min_id_g; /* Macro for "catching" flow of control when an error occurs. Note that the * H5_LEAVE macro won't jump back here once it's past this point. */ -#define CATCH catch_except:; past_catch = TRUE; +/* #define CATCH catch_except:; past_catch = TRUE; defined in H5Eprivate.h */ /* * H5_LEAVE macro, used to facilitate control flow between a @@ -91,32 +137,34 @@ H5TOOLS_DLLVAR hid_t H5E_tools_min_id_g; * The return value is assigned to a variable `ret_value' and control branches * to the `catch_except' label, if we're not already past it. */ -#define H5_LEAVE(v) { \ - ret_value = v; \ - if(!past_catch) \ - goto catch_except; \ -} +/* + * #define H5_LEAVE(v) { \ + * ret_value = v; \ + * if(!past_catch) \ + * goto catch_except; \ + * } + * defined in H5Eprivate.h */ /* - * H5E_THROW macro, used to facilitate error reporting within a function body. + * H5TOOLS_THROW macro, used to facilitate error reporting within a function body. * The arguments are the minor error number, and an error string. * The return value is assigned to a variable `ret_value' and control branches * to the `catch_except' label, if we're not already past it. */ -#define H5E_THROW(fail_value, min_id, ...) { \ +#define H5TOOLS_THROW(fail_value, min_id, ...) { \ H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, min_id, __VA_ARGS__); \ - H5_LEAVE(fail_value) \ + H5_LEAVE(fail_value) \ } /* - * HGOTO_ERROR macro, used to facilitate error reporting within a function body. The arguments are + * H5TOOLS_GOTO_ERROR macro, used to facilitate error reporting within a function body. The arguments are * the major error number, the minor error number, the return value, and an * error string. The return value is assigned to a variable `ret_value' and * control branches to the `done' label. */ -#define HGOTO_ERROR(fail_value, min_id, ...) { \ - HERROR(H5E_tools_g, min_id, __VA_ARGS__); \ - HGOTO_DONE(fail_value) \ +#define H5TOOLS_GOTO_ERROR(fail_value, min_id, ...) { \ + H5TOOLS_ERROR(H5E_tools_g, min_id, __VA_ARGS__); \ + HGOTO_DONE(fail_value) \ } /* @@ -124,7 +172,7 @@ H5TOOLS_DLLVAR hid_t H5E_tools_min_id_g; * The argument is the return value which is assigned to the `ret_value' * variable. Control branches to the `done' label. */ -#define HGOTO_DONE(ret_val) {ret_value = ret_val; goto done;} +/* #define HGOTO_DONE(ret_val) {ret_value = ret_val; goto done;} defined in H5Eprivate.h */ #endif /* H5TOOLS_ERROR_H_ */ diff --git a/tools/lib/h5tools_filters.c b/tools/lib/h5tools_filters.c index cfe7422..aafc7ba 100644 --- a/tools/lib/h5tools_filters.c +++ b/tools/lib/h5tools_filters.c @@ -51,7 +51,7 @@ h5tools_canreadf(const char* name, /* object name, serves also as boolean pr /* get information about filters */ if ((nfilters = H5Pget_nfilters(dcpl_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_nfilters failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_nfilters failed"); /* if we do not have filters, we can read the dataset safely */ if (!nfilters) @@ -60,7 +60,7 @@ h5tools_canreadf(const char* name, /* object name, serves also as boolean pr /* check availability of filters */ for (i = 0; i < nfilters; i++) { if ((filtn = H5Pget_filter2(dcpl_id, (unsigned) i, 0, 0, 0, (size_t) 0, 0, NULL)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_filter2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_filter2 failed"); switch (filtn) { /*------------------------------------------------------------------------- @@ -69,7 +69,7 @@ h5tools_canreadf(const char* name, /* object name, serves also as boolean pr */ default: if ((udfilter_avail = H5Zfilter_avail(filtn)) < 0) { - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Zfilter_avail failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Zfilter_avail failed"); } else if (!udfilter_avail) { if (name) @@ -164,11 +164,11 @@ h5tools_can_encode(H5Z_filter_t filtn) unsigned int filter_config_flags; if (H5Zget_filter_info(filtn, &filter_config_flags) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Zget_filter_info failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Zget_filter_info failed"); if ((filter_config_flags & (H5Z_FILTER_CONFIG_ENCODE_ENABLED | H5Z_FILTER_CONFIG_DECODE_ENABLED)) == 0) { /* filter present but neither encode nor decode is supported (???) */ - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "neither encode nor decode is supported"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "neither encode nor decode is supported"); } else if ((filter_config_flags & (H5Z_FILTER_CONFIG_ENCODE_ENABLED | H5Z_FILTER_CONFIG_DECODE_ENABLED)) == H5Z_FILTER_CONFIG_DECODE_ENABLED) { @@ -178,7 +178,7 @@ h5tools_can_encode(H5Z_filter_t filtn) else if ((filter_config_flags & (H5Z_FILTER_CONFIG_ENCODE_ENABLED | H5Z_FILTER_CONFIG_DECODE_ENABLED)) == H5Z_FILTER_CONFIG_ENCODE_ENABLED) { /* encoder only: write but not read (???) */ - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "encoder only: write but not read"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "encoder only: write but not read"); } else if ((filter_config_flags & (H5Z_FILTER_CONFIG_ENCODE_ENABLED | H5Z_FILTER_CONFIG_DECODE_ENABLED)) diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c index c5759d8..23b7a0e 100644 --- a/tools/lib/h5tools_str.c +++ b/tools/lib/h5tools_str.c @@ -289,19 +289,27 @@ char * h5tools_str_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info, hsize_t elmtno, unsigned ndims, h5tools_context_t *ctx) { + H5TOOLS_ERR_INIT(int, SUCCEED) size_t i = 0; hsize_t curr_pos = elmtno; + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); + + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "elmtno=%ld, ctx->ndims=%d", elmtno, ctx->ndims); h5tools_str_reset(str); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ndims=%d", ndims); if(ndims > 0) { /* * Calculate the number of elements represented by a unit change in a * certain index position. */ for(i = 0; i < (size_t) ndims; i++) { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "curr_pos=%ld - ctx->acc[%d]=%ld", curr_pos, i, ctx->acc[i]); ctx->pos[i] = curr_pos / ctx->acc[i]; curr_pos -= ctx->acc[i] * ctx->pos[i]; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "curr_pos=%ld - ctx->pos[%d]=%ld - ctx->acc[%d]=%ld", curr_pos, i, ctx->pos[i], i, ctx->acc[i]); } HDassert(curr_pos == 0); @@ -316,7 +324,11 @@ h5tools_str_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info, } } else /* Scalar */ - h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t) 0); + h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t)elmtno); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "str=%s", str->s); + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); /* Add prefix and suffix to the index */ return h5tools_str_fmt(str, (size_t)0, OPT(info->idx_fmt, "%s: ")); @@ -672,6 +684,7 @@ char * h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t container, hid_t type, void *vp, h5tools_context_t *ctx) { + H5TOOLS_ERR_INIT(char*, NULL); size_t nsize, offset, size=0, nelmts, start; H5T_sign_t nsign; char *name = NULL; @@ -683,6 +696,8 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai H5T_str_t pad; H5T_class_t type_class; + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); /* Build default formats for long long types */ if(!fmt_llong[0]) { HDsnprintf(fmt_llong, sizeof(fmt_llong), "%%%sd", H5_PRINTF_LL_WIDTH); @@ -711,6 +726,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai return NULL; switch (type_class) { case H5T_FLOAT: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_FLOAT"); if(sizeof(float) == nsize) { /* if (H5Tequal(type, H5T_NATIVE_FLOAT)) */ float tempfloat; @@ -742,6 +758,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai char quote = '\0'; char *s; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_STRING"); quote = '\0'; if(H5Tis_variable_str(type)) { /* cp_vp is the pointer into the struct where a `char*' is stored. So we have @@ -814,6 +831,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai break; case H5T_INTEGER: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_INTEGER"); if(sizeof(char) == nsize) { if(info->ascii) h5tools_print_char(str, info, (char) (*ucp_vp)); @@ -951,6 +969,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai break; case H5T_COMPOUND: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_COMPOUND"); if(ctx->cmpd_listv) { /* there is <list_of_fields> */ unsigned save_indent_level; /* The indentation level */ size_t curr_field; /* Current field to display */ @@ -1052,6 +1071,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai { char enum_name[1024]; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_ENUM"); if(H5Tenum_nameof(type, vp, enum_name, sizeof enum_name) >= 0) h5tools_str_append(str, h5tools_escape(enum_name, sizeof(enum_name))); else { @@ -1066,61 +1086,119 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai break; case H5T_REFERENCE: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_REFERENCE"); if(h5tools_str_is_zero(vp, nsize)) h5tools_str_append(str, "NULL"); else { - if(nsize == H5R_DSET_REG_REF_BUF_SIZE) { - /* if (H5Tequal(type, H5T_STD_REF_DSETREG)) */ - h5tools_str_sprint_region(str, info, container, vp); + if (H5Tequal(type, H5T_STD_REF)) { + char *obj_name = NULL; + H5O_type_t obj_type; /* Object type */ + H5R_type_t ref_type; /* Reference type */ + const H5R_ref_t *ref_vp = (const H5R_ref_t *)vp; + + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_REFERENCE:H5T_STD_REF"); + ref_type = H5Rget_type(ref_vp); + H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type); + switch (ref_type) { + case H5R_OBJECT1: + { + /* Object references -- show the type and OID of the referenced object. */ + H5O_info_t oi; + + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_OBJECT1"); + if((obj = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + H5Oget_info2(obj, &oi, H5O_INFO_BASIC); + if(H5Oclose(obj) < 0) + H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, H5E_tools_min_id_g, + "H5Oclose H5R_OBJECT1 failed"); + } + else + H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, H5E_tools_min_id_g, + "H5Ropen_object H5R_OBJECT1 failed"); + + /* Print object type and close object */ + switch (obj_type) { + case H5O_TYPE_GROUP: + h5tools_str_append(str, "%u-%s", (unsigned) oi.type, H5_TOOLS_GROUP); + break; + + case H5O_TYPE_DATASET: + h5tools_str_append(str, "%u-%s", (unsigned) oi.type, H5_TOOLS_DATASET); + break; + + case H5O_TYPE_NAMED_DATATYPE: + h5tools_str_append(str, "%u-%s", (unsigned) oi.type, H5_TOOLS_DATATYPE); + break; + + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + h5tools_str_append(str, "%u-", (unsigned) oi.type); + break; + } /* end switch */ + H5Oclose(obj); + h5tools_str_sprint_reference(str, info, container, ref_vp); + + /* Print OID */ + if(info->obj_hidefileno) + h5tools_str_append(str, info->obj_format, oi.addr); + else + h5tools_str_append(str, info->obj_format, oi.fileno, oi.addr); + } + break; + case H5R_DATASET_REGION1: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_DATASET_REGION1"); + h5tools_str_append(str, H5_TOOLS_DATASET); + h5tools_str_sprint_reference(str, info, container, ref_vp); + break; + case H5R_OBJECT2: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_OBJECT2"); + switch (obj_type) { + case H5O_TYPE_GROUP: + h5tools_str_append(str, H5_TOOLS_GROUP); + break; + + case H5O_TYPE_DATASET: + h5tools_str_append(str, H5_TOOLS_DATASET); + break; + + case H5O_TYPE_NAMED_DATATYPE: + h5tools_str_append(str, H5_TOOLS_DATATYPE); + break; + + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + break; + } /* end switch */ + h5tools_str_sprint_reference(str, info, container, ref_vp); + break; + case H5R_DATASET_REGION2: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_DATASET_REGION2"); + h5tools_str_append(str, H5_TOOLS_DATASET); + h5tools_str_sprint_reference(str, info, container, ref_vp); + break; + case H5R_ATTR: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_ATTR"); + h5tools_str_append(str, H5_TOOLS_ATTRIBUTE); + h5tools_str_sprint_reference(str, info, container, ref_vp); + break; + case H5R_BADTYPE: + case H5R_MAXTYPE: + default: + break; + } /* end switch */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_REFERENCE:H5T_STD_REF end"); } - else if (nsize == H5R_OBJ_REF_BUF_SIZE) { - /* if (H5Tequal(type, H5T_STD_REF_OBJ)) */ - /* - * Object references -- show the type and OID of the referenced - * object. - */ - H5O_info_t oi; - const char *path; - - obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, vp); - H5Oget_info2(obj, &oi, H5O_INFO_BASIC); - - /* Print object type and close object */ - switch(oi.type) { - case H5O_TYPE_GROUP: - h5tools_str_append(str, H5_TOOLS_GROUP); - break; - - case H5O_TYPE_DATASET: - h5tools_str_append(str, H5_TOOLS_DATASET); - break; - - case H5O_TYPE_NAMED_DATATYPE: - h5tools_str_append(str, H5_TOOLS_DATATYPE); - break; - - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - h5tools_str_append(str, "%u-", (unsigned) oi.type); - break; - } /* end switch */ - H5Oclose(obj); - - /* Print OID */ - if(info->obj_hidefileno) - h5tools_str_append(str, info->obj_format, oi.addr); - else - h5tools_str_append(str, info->obj_format, oi.fileno, oi.addr); - - /* Print name */ - path = lookup_ref_path(*(haddr_t *) vp); - if(path) { - h5tools_str_append(str, " "); - h5tools_str_append(str, path); - h5tools_str_append(str, " "); - } /* end if */ + else if (H5Tequal(type, H5T_STD_REF_DSETREG)) { + /* if(nsize == H5R_DSET_REG_REF_BUF_SIZE) */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_REFERENCE:H5T_STD_REF_DSETREG"); + } + else if (H5Tequal(type, H5T_STD_REF_OBJ)) { + /* if (nsize == H5R_OBJ_REF_BUF_SIZE) */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_REFERENCE:H5T_STD_REF_OBJ"); } /* end else if (H5Tequal(type, H5T_STD_REF_OBJ)) */ } break; @@ -1131,6 +1209,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai hsize_t i, dims[H5S_MAX_RANK], temp_nelmts; static int is_next_arry_elmt = 0; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_ARRAY"); /* Get the array's base datatype for each element */ memb = H5Tget_super(type); size = H5Tget_size(memb); @@ -1192,6 +1271,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai { unsigned int i; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5T_VLEN"); /* Get the VL sequences's base datatype for each element */ memb = H5Tget_super(type); size = H5Tget_size(memb); @@ -1238,6 +1318,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai case H5T_BITFIELD: case H5T_OPAQUE: { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "OTHER"); /* All other types get printed as hexadecimal */ size_t i; if(1 == nsize) @@ -1255,49 +1336,75 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai break; } /* end switch */ } - return h5tools_str_fmt(str, start, OPT(info->elmt_fmt, "%s")); +CATCH + ret_value = h5tools_str_fmt(str, start, OPT(info->elmt_fmt, "%s")); + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit with %s", ret_value); + H5TOOLS_POP_STACK(); + return ret_value; } /*------------------------------------------------------------------------- - * Function: h5tools_str_sprint_region + * Function: h5tools_str_sprint_reference * - * Purpose: Dataset region reference -- show the type and data of the referenced object. + * Purpose: Object reference -- show the name of the referenced object. * * Return: Nothing *------------------------------------------------------------------------- */ void -h5tools_str_sprint_region(h5tools_str_t *str, const h5tool_format_t *info, - hid_t container, void *vp) +h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info, + hid_t container, H5R_ref_t *ref_vp) { - hid_t obj = -1; - hid_t region = -1; - char ref_name[1024]; - H5S_sel_type region_type; - - obj = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, vp); - if(obj >= 0) { - region = H5Rget_region(container, H5R_DATASET_REGION, vp); - if(region >= 0) { - H5Rget_name(obj, H5R_DATASET_REGION, vp, (char*) ref_name, 1024); - - h5tools_str_append(str, info->dset_format, ref_name); + H5TOOLS_ERR_INIT(int, SUCCEED); + ssize_t buf_size, status; + + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); + + h5tools_str_append(str, " "); + buf_size = H5Rget_file_name(ref_vp, NULL, 0); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "buf_size=%ld", buf_size); + if (buf_size) { + char *file_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); + status = H5Rget_file_name(ref_vp, file_name, buf_size + 1); + file_name[buf_size] = '\0'; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "name=%s", file_name); + + h5tools_str_append(str, "%s", file_name); + HDfree(file_name); + } - h5tools_str_append(str, "{"); + buf_size = H5Rget_obj_name(ref_vp, H5P_DEFAULT, NULL, 0); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "buf_size=%ld", buf_size); + if (buf_size) { + char *obj_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); + status = H5Rget_obj_name(ref_vp, H5P_DEFAULT, obj_name, buf_size + 1); + obj_name[buf_size] = '\0'; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "name=%s", obj_name); - region_type = H5Sget_select_type(region); - if(region_type==H5S_SEL_POINTS) - h5tools_str_dump_space_points(str, region, info); - else - h5tools_str_dump_space_blocks(str, region, info); + h5tools_str_append(str, "%s", obj_name); + HDfree(obj_name); + } - h5tools_str_append(str, "}"); + if (H5Rget_type(ref_vp) == H5R_ATTR) { + buf_size = H5Rget_attr_name(ref_vp, NULL, 0); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "buf_size=%ld", buf_size); + if (buf_size) { + char *attr_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); + status = H5Rget_attr_name(ref_vp, attr_name, buf_size + 1); + attr_name[buf_size] = '\0'; + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "name=%s", attr_name); + + h5tools_str_append(str, "/%s", attr_name); + HDfree(attr_name); + } + } - H5Sclose(region); - } /* end if (region >= 0) */ - H5Dclose(obj); - } /* end if (obj >= 0) */ +CATCH + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); } /*------------------------------------------------------------------------- diff --git a/tools/lib/h5tools_str.h b/tools/lib/h5tools_str.h index a5045ac..6fdf36a 100644 --- a/tools/lib/h5tools_str.h +++ b/tools/lib/h5tools_str.h @@ -36,17 +36,16 @@ H5TOOLS_DLL char *h5tools_str_prefix(h5tools_str_t *str, const h5tool_format_ * new functions needed to display region reference data */ H5TOOLS_DLL char *h5tools_str_region_prefix(h5tools_str_t *str, const h5tool_format_t *info, - hsize_t elmtno, hsize_t *ptdata, unsigned ndims, + hsize_t elmtno, hsize_t *ptdata, unsigned ndims, hsize_t max_idx[], h5tools_context_t *ctx); H5TOOLS_DLL void h5tools_str_dump_space_slabs(h5tools_str_t *, hid_t, const h5tool_format_t *, h5tools_context_t *ctx); H5TOOLS_DLL void h5tools_str_dump_space_blocks(h5tools_str_t *, hid_t, const h5tool_format_t *); H5TOOLS_DLL void h5tools_str_dump_space_points(h5tools_str_t *, hid_t, const h5tool_format_t *); -H5TOOLS_DLL void h5tools_str_sprint_region(h5tools_str_t *str, const h5tool_format_t *info, hid_t container, - void *vp); +H5TOOLS_DLL void h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info, hid_t container, H5R_ref_t *vp); H5TOOLS_DLL char *h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t container, hid_t type, void *vp, h5tools_context_t *ctx); -H5TOOLS_DLL char *h5tools_str_replace ( const char *string, const char *substr, - const char *replacement ); +H5TOOLS_DLL char *h5tools_str_replace ( const char *string, const char *substr, + const char *replacement ); #endif /* H5TOOLS_STR_H__ */ diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index 47ce690..7b47f4d 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -803,7 +803,7 @@ init_objs(hid_t fid, find_objs_t *info, table_t **group_table, /* Find all shared objects */ if((ret_value = h5trav_visit(fid, "/", TRUE, TRUE, find_objs_cb, NULL, info, H5O_INFO_BASIC)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "finding shared objects failed") + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "finding shared objects failed") done: /* Release resources */ @@ -1056,7 +1056,7 @@ h5tools_getenv_update_hyperslab_bufsize(void) errno = 0; hyperslab_bufsize_mb = HDstrtol(env_str, (char**)NULL, 10); if (errno != 0 || hyperslab_bufsize_mb <= 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "hyperslab buffer size failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "hyperslab buffer size failed"); /* convert MB to byte */ H5TOOLS_BUFSIZE = (hsize_t)hyperslab_bufsize_mb * 1024 * 1024; diff --git a/tools/lib/h5tools_utils.h b/tools/lib/h5tools_utils.h index 0fa5250..17c16bf 100644 --- a/tools/lib/h5tools_utils.h +++ b/tools/lib/h5tools_utils.h @@ -28,13 +28,13 @@ extern "C" { /* ``parallel_print'' information */ #define PRINT_DATA_MAX_SIZE 512 -#define OUTBUFF_SIZE (PRINT_DATA_MAX_SIZE*4) +#define OUTBUFF_SIZE (PRINT_DATA_MAX_SIZE*4) -H5TOOLS_DLLVAR int g_nTasks; +H5TOOLS_DLLVAR int g_nTasks; H5TOOLS_DLLVAR unsigned char g_Parallel; -H5TOOLS_DLLVAR char outBuff[]; +H5TOOLS_DLLVAR char outBuff[]; H5TOOLS_DLLVAR unsigned outBuffOffset; -H5TOOLS_DLLVAR FILE * overflow_file; +H5TOOLS_DLLVAR FILE *overflow_file; /* Maximum size used in a call to malloc for a dataset */ H5TOOLS_DLLVAR hsize_t H5TOOLS_MALLOCSIZE; @@ -88,8 +88,7 @@ typedef struct long_options { * this gets returned from get_option */ } long_options; -H5TOOLS_DLL int get_option(int argc, const char **argv, const char *opt, - const struct long_options *l_opt); +H5TOOLS_DLL int get_option(int argc, const char **argv, const char *opt, const struct long_options *l_opt); /* * end get_option section */ @@ -97,7 +96,7 @@ H5TOOLS_DLL int get_option(int argc, const char **argv, const char *opt, /*struct taken from the dumper. needed in table struct*/ typedef struct obj_t { haddr_t objno; - char *objname; + char *objname; hbool_t displayed; /* Flag to indicate that the object has been displayed */ hbool_t recorded; /* Flag for named datatypes to indicate they were found in the group hierarchy */ } obj_t; @@ -111,7 +110,7 @@ typedef struct table_t { /*this struct stores the information that is passed to the find_objs function*/ typedef struct find_objs_t { - hid_t fid; + hid_t fid; table_t *group_table; table_t *type_table; table_t *dset_table; @@ -120,26 +119,21 @@ typedef struct find_objs_t { H5TOOLS_DLLVAR unsigned h5tools_nCols; /*max number of columns for outputting */ /* Definitions of useful routines */ -H5TOOLS_DLL void indentation(unsigned); -H5TOOLS_DLL void print_version(const char *progname); -H5TOOLS_DLL void parallel_print(const char* format, ... ); -H5TOOLS_DLL herr_t parse_tuple(const char *start, - int sep, - char **cpy_out, - unsigned *nelems, - char ***ptrs_out); -H5TOOLS_DLL void error_msg(const char *fmt, ...); -H5TOOLS_DLL void warn_msg(const char *fmt, ...); -H5TOOLS_DLL void help_ref_msg(FILE *output); -H5TOOLS_DLL void free_table(table_t *table); +H5TOOLS_DLL void indentation(unsigned); +H5TOOLS_DLL void print_version(const char *progname); +H5TOOLS_DLL void parallel_print(const char* format, ... ); +H5TOOLS_DLL herr_t parse_tuple(const char *start, int sep, char **cpy_out, unsigned *nelems, char ***ptrs_out); +H5TOOLS_DLL void error_msg(const char *fmt, ...); +H5TOOLS_DLL void warn_msg(const char *fmt, ...); +H5TOOLS_DLL void help_ref_msg(FILE *output); +H5TOOLS_DLL void free_table(table_t *table); #ifdef H5DUMP_DEBUG -H5TOOLS_DLL void dump_tables(find_objs_t *info) +H5TOOLS_DLL void dump_tables(find_objs_t *info) #endif /* H5DUMP_DEBUG */ -H5TOOLS_DLL herr_t init_objs(hid_t fid, find_objs_t *info, table_t **group_table, - table_t **dset_table, table_t **type_table); -H5TOOLS_DLL obj_t *search_obj(table_t *temp, haddr_t objno); +H5TOOLS_DLL herr_t init_objs(hid_t fid, find_objs_t *info, table_t **group_table, table_t **dset_table, table_t **type_table); +H5TOOLS_DLL obj_t *search_obj(table_t *temp, haddr_t objno); #ifndef H5_HAVE_TMPFILE -H5TOOLS_DLL FILE * tmpfile(void); +H5TOOLS_DLL FILE *tmpfile(void); #endif /************************************************************* @@ -161,30 +155,26 @@ typedef struct { /* obtain link info from H5tools_get_symlink_info() */ typedef struct { - H5O_type_t trg_type; /* OUT: target type */ - char *trg_path; /* OUT: target obj path. This must be freed - * when used with H5tools_get_symlink_info() */ - haddr_t objno; /* OUT: target object address */ - unsigned long fileno; /* OUT: File number that target object is located in */ - H5L_info_t linfo; /* OUT: link info */ - h5tool_opt_t opt; /* IN: options */ + H5O_type_t trg_type; /* OUT: target type */ + char *trg_path; /* OUT: target obj path. This must be freed + * when used with H5tools_get_symlink_info() */ + haddr_t objno; /* OUT: target object address */ + unsigned long fileno; /* OUT: File number that target object is located in */ + H5L_info_t linfo; /* OUT: link info */ + h5tool_opt_t opt; /* IN: options */ } h5tool_link_info_t; /* Definitions of routines */ -H5TOOLS_DLL int H5tools_get_symlink_info(hid_t file_id, const char * linkpath, - h5tool_link_info_t *link_info, hbool_t get_obj_type); +H5TOOLS_DLL int H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_t *link_info, hbool_t get_obj_type); H5TOOLS_DLL const char *h5tools_getprogname(void); -H5TOOLS_DLL void h5tools_setprogname(const char*progname); -H5TOOLS_DLL int h5tools_getstatus(void); -H5TOOLS_DLL void h5tools_setstatus(int d_status); +H5TOOLS_DLL void h5tools_setprogname(const char*progname); +H5TOOLS_DLL int h5tools_getstatus(void); +H5TOOLS_DLL void h5tools_setstatus(int d_status); H5TOOLS_DLL int h5tools_getenv_update_hyperslab_bufsize(void); -H5TOOLS_DLL int h5tools_set_configured_fapl(hid_t fapl_id, - const char vfd_name[], - void *fapl_t_ptr); +H5TOOLS_DLL int h5tools_set_configured_fapl(hid_t fapl_id, const char vfd_name[], void *fapl_t_ptr); #ifdef H5_HAVE_ROS3_VFD -H5TOOLS_DLL int h5tools_populate_ros3_fapl(H5FD_ros3_fapl_t *fa, - const char **values); +H5TOOLS_DLL int h5tools_populate_ros3_fapl(H5FD_ros3_fapl_t *fa, const char **values); #endif /* H5_HAVE_ROS3_VFD */ #ifdef __cplusplus diff --git a/tools/lib/h5trav.c b/tools/lib/h5trav.c index eb7b56d..4f4f42a 100644 --- a/tools/lib/h5trav.c +++ b/tools/lib/h5trav.c @@ -259,7 +259,7 @@ traverse(hid_t file_id, const char *grp_name, hbool_t visit_start, /* Get info for starting object */ if(H5Oget_info_by_name2(file_id, grp_name, &oinfo, fields, H5P_DEFAULT) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info_by_name failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info_by_name failed"); /* Visit the starting object */ if(visit_start && visitor->visit_obj) @@ -289,12 +289,12 @@ traverse(hid_t file_id, const char *grp_name, hbool_t visit_start, if(recurse) { /* Visit all links in group, recursively */ if(H5Lvisit_by_name(file_id, grp_name, trav_index_by, trav_index_order, traverse_cb, &udata, H5P_DEFAULT) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Lvisit_by_name failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Lvisit_by_name failed"); } /* end if */ else { /* Iterate over links in group */ if(H5Literate_by_name(file_id, grp_name, trav_index_by, trav_index_order, NULL, traverse_cb, &udata, H5P_DEFAULT) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Literate_by_name failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Literate_by_name failed"); } /* end else */ /* Free visited addresses table */ @@ -439,7 +439,7 @@ h5trav_getinfo(hid_t file_id, trav_info_t *info) /* Traverse all objects in the file, visiting each object & link */ if(traverse(file_id, "/", TRUE, TRUE, &info_visitor, H5O_INFO_BASIC) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); done: return ret_value; @@ -605,7 +605,7 @@ h5trav_gettable(hid_t fid, trav_table_t *table) /* Traverse all objects in the file, visiting each object & link */ if(traverse(fid, "/", TRUE, TRUE, &table_visitor, H5O_INFO_BASIC) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); done: return ret_value; @@ -1031,7 +1031,7 @@ h5trav_print(hid_t fid) /* Traverse all objects in the file, visiting each object & link */ if(traverse(fid, "/", TRUE, TRUE, &print_visitor, H5O_INFO_BASIC) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); done: return ret_value; @@ -1062,7 +1062,7 @@ h5trav_visit(hid_t fid, const char *grp_name, hbool_t visit_start, /* Traverse all objects in the file, visiting each object & link */ if(traverse(fid, grp_name, visit_start, recurse, &visitor, fields) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); done: return ret_value; @@ -1089,7 +1089,7 @@ symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, co visited->nalloc = MAX(1, visited->nalloc * 2); if(NULL == (tmp_ptr = HDrealloc(visited->objs, visited->nalloc * sizeof(symlink_trav_path_t)))) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "visited data structure realloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "visited data structure realloc failed"); visited->objs = (symlink_trav_path_t *)tmp_ptr; } /* end if */ @@ -1103,7 +1103,7 @@ symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, co if(type == H5L_TYPE_EXTERNAL) { if(NULL == (visited->objs[idx].file = HDstrdup(file))) { visited->nused--; - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "visited data structure name allocation failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "visited data structure name allocation failed"); } /* end if */ } /* end if */ @@ -1111,7 +1111,7 @@ symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, co visited->nused--; if(visited->objs[idx].file) HDfree (visited->objs[idx].file); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "visited data structure path allocation failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "visited data structure path allocation failed"); } /* end if */ done: diff --git a/tools/src/h5copy/h5copy.c b/tools/src/h5copy/h5copy.c index 9490cd9..ffcd2b9 100644 --- a/tools/src/h5copy/h5copy.c +++ b/tools/src/h5copy/h5copy.c @@ -207,7 +207,7 @@ static int parse_flag(const char* s_flag, unsigned *flag) int main (int argc, const char *argv[]) { - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + int ret_value = 0; /*no need to LEAVE() on ERROR: H5TOOLS_ERR_INIT(int, SUCCEED) */ H5E_auto2_t func; H5E_auto2_t tools_func; void *edata; @@ -395,18 +395,18 @@ main (int argc, const char *argv[]) /* create property to pass copy options */ if ( (ocpl_id = H5Pcreate(H5P_OBJECT_COPY)) < 0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pcreate failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pcreate failed"); /* set options for object copy */ if (flag) { if ( H5Pset_copy_object(ocpl_id, flag) < 0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pset_copy_object failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pset_copy_object failed"); } /* Create link creation property list */ if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) { error_msg("Could not create link creation property list\n"); - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pcreate failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pcreate failed"); } /* end if */ /* Check for creating intermediate groups */ @@ -414,7 +414,7 @@ main (int argc, const char *argv[]) /* Set the intermediate group creation property */ if(H5Pset_create_intermediate_group(lcpl_id, 1) < 0) { error_msg("Could not set property for creating parent groups\n"); - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pset_create_intermediate_group failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pset_create_intermediate_group failed"); } /* end if */ /* Display some output if requested */ @@ -438,7 +438,7 @@ main (int argc, const char *argv[]) if (H5Lexists(fid_dst, str_ptr, H5P_DEFAULT) <= 0) { error_msg("group <%s> doesn't exist. Use -p to create parent groups.\n", str_ptr); HDfree(str_ptr); - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Lexists failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Lexists failed"); } HDfree(str_ptr); } @@ -458,7 +458,7 @@ main (int argc, const char *argv[]) if(H5Lcopy(fid_src, oname_src, fid_dst, oname_dst, H5P_DEFAULT, H5P_DEFAULT) < 0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Lcopy failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Lcopy failed"); } else { /* valid link */ @@ -468,7 +468,7 @@ main (int argc, const char *argv[]) oname_dst, /* Name of the destination object */ ocpl_id, /* Object copy property list */ lcpl_id)<0) /* Link creation property list */ - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Ocopy failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Ocopy failed"); } /* free link info path */ @@ -477,15 +477,15 @@ main (int argc, const char *argv[]) /* close propertis */ if(H5Pclose(ocpl_id)<0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pclose failed"); if(H5Pclose(lcpl_id)<0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pclose failed"); /* close files */ if (H5Fclose(fid_src)<0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Fclose failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Fclose failed"); if (H5Fclose(fid_dst)<0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Fclose failed"); + H5TOOLS_GOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Fclose failed"); leave(EXIT_SUCCESS); diff --git a/tools/src/h5dump/h5dump.c b/tools/src/h5dump/h5dump.c index 19ed013..507a62f 100644 --- a/tools/src/h5dump/h5dump.c +++ b/tools/src/h5dump/h5dump.c @@ -634,8 +634,7 @@ parse_hsize_list(const char *h_list, subset_d *d) /*------------------------------------------------------------------------- * Function: parse_subset_params * - * Purpose: Parse the so-called "terse" syntax for specifying subsetting - * parameters. + * Purpose: Parse the so-called "terse" syntax for specifying subsetting parameters. * * Return: Success: struct subset_t object * Failure: NULL diff --git a/tools/src/h5dump/h5dump_ddl.c b/tools/src/h5dump/h5dump_ddl.c index d7c7b1a..2538bf9 100644 --- a/tools/src/h5dump/h5dump_ddl.c +++ b/tools/src/h5dump/h5dump_ddl.c @@ -41,11 +41,6 @@ static int dump_extlink(hid_t group, const char *linkname, const char *objn * atomic datatype or committed/transient datatype. * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -70,11 +65,6 @@ dump_datatype(hid_t type) * array, or others. * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -97,14 +87,7 @@ dump_dataspace(hid_t space) * Purpose: attribute function callback called by H5Aiterate2, displays the attribute * * Return: Success: SUCCEED - * * Failure: FAIL - * - * Programmer: Ruey-Hsia Li - * - * Modifications: Pedro Vicente, October 4, 2007 - * Added H5A_info_t parameter to conform with H5Aiterate2 - * *------------------------------------------------------------------------- */ herr_t @@ -120,6 +103,8 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent / COL; ctx.cur_column = dump_indent; + ctx.display_index = display_ai; + ctx.display_char = display_char; attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT); oid_output = display_oid; @@ -144,7 +129,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * outputformat = &string_dataformat; h5dump_type_table = type_table; - h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id, display_ai, display_char); + h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id); h5dump_type_table = NULL; if(attr_id < 0) { @@ -163,18 +148,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * * displays everything in the specified object * * Return: Success: SUCCEED - * * Failure: FAIL - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * RMcG, November 2000 - * Added XML support. Also, optionally checks the op_data argument - * - * PVN, May 2008 - * Dump external links - * *------------------------------------------------------------------------- */ static herr_t @@ -183,12 +157,12 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR hid_t obj; hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */ herr_t ret = SUCCEED; - char *obj_path = NULL; /* Full path of object */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ + char *obj_path = NULL; /* Full path of object */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; - hsize_t curr_pos = 0; /* total data element position */ + hsize_t curr_pos = 0; /* total data element position */ /* setup */ HDmemset(&buffer, 0, sizeof(h5tools_str_t)); @@ -584,7 +558,6 @@ done: * Purpose: Iterate and display attributes within the specified group * * Return: void - * *------------------------------------------------------------------------- */ void @@ -614,7 +587,6 @@ attr_iteration(hid_t gid, unsigned attr_crt_order_flags) * Purpose: Iterate and display links within the specified group * * Return: void - * *------------------------------------------------------------------------- */ void @@ -635,15 +607,6 @@ link_iteration(hid_t gid, unsigned crt_order_flags) * Purpose: Dump named datatype * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * Pedro Vicente, March 27, 2006 - * added display of attributes - * Pedro Vicente, October 4, 2007, added parameters to H5Aiterate2() to allow for - * other iteration orders - * *------------------------------------------------------------------------- */ void @@ -651,10 +614,10 @@ dump_named_datatype(hid_t tid, const char *name) { H5O_info_t oinfo; unsigned attr_crt_order_flags; - hid_t tcpl_id = -1; /* datatype creation property list ID */ - hsize_t curr_pos = 0; /* total data element position */ + hid_t tcpl_id = -1; /* datatype creation property list ID */ + hsize_t curr_pos = 0; /* total data element position */ h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ + h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; @@ -771,16 +734,6 @@ done: * Purpose: Dump everything within the specified group * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * - * Call to dump_all_cb -- add parameter to select everything. - * - * Pedro Vicente, October 1, 2007 - * handle several iteration orders for attributes and groups - * *------------------------------------------------------------------------- */ void @@ -793,11 +746,11 @@ dump_group(hid_t gid, const char *name) unsigned crt_order_flags; unsigned attr_crt_order_flags; char type_name[1024]; - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; - hsize_t curr_pos = 0; /* total data element position */ + hsize_t curr_pos = 0; /* total data element position */ if ((gcpl_id = H5Gget_create_plist(gid)) < 0) { error_msg("error in getting group creation property list ID\n"); @@ -935,14 +888,6 @@ dump_group(hid_t gid, const char *name) * Purpose: Dump the specified data set * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * Pedro Vicente, 2004, added dataset creation property list display - * Pedro Vicente, October 4, 2007, added parameters to H5Aiterate2() to allow for - * other iteration orders - * *------------------------------------------------------------------------- */ void @@ -951,11 +896,11 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; - hid_t type, space; - unsigned attr_crt_order_flags; - hid_t dcpl_id; /* dataset creation property list ID */ - h5tools_str_t buffer; /* string into which to render */ - hsize_t curr_pos = 0; /* total data element position */ + hid_t type, space; + unsigned attr_crt_order_flags; + hid_t dcpl_id; /* dataset creation property list ID */ + h5tools_str_t buffer; /* string into which to render */ + hsize_t curr_pos = 0; /* total data element position */ HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent / COL; @@ -1027,6 +972,9 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) } H5Pclose(dcpl_id); + ctx.sset = sset; + ctx.display_index = display_ai; + ctx.display_char = display_char; if(display_data) { unsigned data_loop = 1; unsigned u; @@ -1070,7 +1018,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) case H5T_VLEN: case H5T_ARRAY: { - h5tools_dump_data(rawoutstream, outputformat, &ctx, did, TRUE, sset, display_ai, display_char); + h5tools_dump_data(rawoutstream, outputformat, &ctx, did, TRUE); } break; @@ -1113,13 +1061,6 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) * Purpose: Dump attribute or dataset data * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: pvn, print the matrix indices - * Albert Cheng, 2004/11/18 - * Add --string printing for attributes too. - * *------------------------------------------------------------------------- */ void @@ -1150,10 +1091,13 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index) HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent / COL; ctx.cur_column = dump_indent; + ctx.sset = sset; + ctx.display_index = display_index; + ctx.display_char = display_char; if(obj_data == DATASET_DATA) print_dataset = TRUE; - h5tools_dump_data(rawoutstream, outputformat, &ctx, obj_id, print_dataset, sset, display_index, display_char); + h5tools_dump_data(rawoutstream, outputformat, &ctx, obj_id, print_dataset); } @@ -1163,11 +1107,6 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index) * Purpose: prints file creation property list information * * Return: void - * - * Programmer: pvn - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -1178,9 +1117,9 @@ dump_fcpl(hid_t fid) size_t off_size; /* size of offsets in the file */ size_t len_size; /* size of lengths in the file */ H5F_fspace_strategy_t fs_strategy; /* file space strategy */ - hbool_t fs_persist; /* Persisting free-space or not */ - hsize_t fs_threshold; /* free-space section threshold */ - hsize_t fsp_size; /* file space page size */ + hbool_t fs_persist; /* Persisting free-space or not */ + hsize_t fs_threshold; /* free-space section threshold */ + hsize_t fsp_size; /* file space page size */ H5F_info2_t finfo; /* file information */ #ifdef SHOW_FILE_DRIVER hid_t fapl; /* file access property list ID */ @@ -1261,13 +1200,17 @@ dump_fcpl(hid_t fid) indentation(dump_indent + COL); if(fs_strategy == H5F_FSPACE_STRATEGY_FSM_AGGR) { PRINTSTREAM(rawoutstream, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FSPACE_STRATEGY_FSM_AGGR"); - } else if(fs_strategy == H5F_FSPACE_STRATEGY_PAGE) { + } + else if(fs_strategy == H5F_FSPACE_STRATEGY_PAGE) { PRINTSTREAM(rawoutstream, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FSPACE_STRATEGY_PAGE"); - } else if(fs_strategy == H5F_FSPACE_STRATEGY_AGGR) { + } + else if(fs_strategy == H5F_FSPACE_STRATEGY_AGGR) { PRINTSTREAM(rawoutstream, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FSPACE_STRATEGY_AGGR"); - } else if(fs_strategy == H5F_FSPACE_STRATEGY_NONE) { + } + else if(fs_strategy == H5F_FSPACE_STRATEGY_NONE) { PRINTSTREAM(rawoutstream, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FSPACE_STRATEGY_NONE"); - } else + } + else PRINTSTREAM(rawoutstream, "%s %s\n", "FILE_SPACE_STRATEGY", "Unknown strategy"); indentation(dump_indent + COL); PRINTSTREAM(rawoutstream, "%s %s\n","FREE_SPACE_PERSIST", fs_persist ? "TRUE" : "FALSE"); @@ -1296,11 +1239,6 @@ dump_fcpl(hid_t fid) * Purpose: prints all objects * * Return: void - * - * Programmer: pvn - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -1472,7 +1410,6 @@ lnk_search(const char *path, const H5L_info_t *li, void *_op_data) * Purpose: Handle objects from the command. * * Return: void - * *------------------------------------------------------------------------- */ void @@ -1527,30 +1464,21 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H * Purpose: Handle the attributes from the command. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 9. January 2001 - * - * Modifications: - * - * PVN, May 2008 - * add an extra parameter PE, to allow printing/not printing of error messages - * *------------------------------------------------------------------------- */ void -handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name) +handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED *data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name) { hid_t oid = -1; hid_t attr_id = -1; char *obj_name = NULL; char *attr_name = NULL; int j; - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; - hsize_t curr_pos = 0; /* total data element position */ + hsize_t curr_pos = 0; /* total data element position */ j = (int)HDstrlen(attr) - 1; obj_name = (char *)HDmalloc((size_t)j + 2); @@ -1576,6 +1504,8 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent / COL; ctx.cur_column = dump_indent; + ctx.display_index = display_ai; + ctx.display_char = display_char; string_dataformat = *outputformat; @@ -1635,7 +1565,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H attr_data_output = display_attr_data; h5dump_type_table = type_table; - h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id, display_ai, display_char); + h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id); h5dump_type_table = NULL; if(attr_id < 0) { @@ -1673,19 +1603,6 @@ error: * Purpose: Handle the datasets from the command. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 9. January 2001 - * - * Modifications: - * Pedro Vicente, Tuesday, January 15, 2008 - * check for block overlap\ - * - * Pedro Vicente, May 8, 2008 - * added a flag PE that prints/not prints error messages - * added for cases of external links not found, to avoid printing of - * objects not found, since external links are dumped on a trial error basis - * *------------------------------------------------------------------------- */ void @@ -1846,18 +1763,6 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis * Purpose: Handle the groups from the command. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 9. January 2001 - * - * Modifications: Pedro Vicente, September 26, 2007 - * handle creation order - * - * Pedro Vicente, May 8, 2008 - * added a flag PE that prints/not prints error messages - * added for cases of external links not found, to avoid printing of - * objects not found, since external links are dumped on a trial error basis - * *------------------------------------------------------------------------- */ void @@ -1902,12 +1807,6 @@ handle_groups(hid_t fid, const char *group, void H5_ATTR_UNUSED *data, int pe, c * Purpose: Handle soft or UD links from the command. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 9. January 2001 - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -1988,17 +1887,6 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT * Purpose: Handle the datatypes from the command. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 9. January 2001 - * - * Modifications: - * - * Pedro Vicente, May 8, 2008 - * added a flag PE that prints/not prints error messages - * added for cases of external links not found, to avoid printing of - * objects not found, since external links are dumped on a trial error basis - * *------------------------------------------------------------------------- */ void @@ -2063,19 +1951,10 @@ handle_datatypes(hid_t fid, const char *type, void H5_ATTR_UNUSED * data, int pe /*------------------------------------------------------------------------- * Function: dump_extlink * - * made by: PVN - * * Purpose: Dump an external link - * Since external links are soft links, they are dumped on a trial error - * basis, attempting to dump as a dataset, as a group and as a named datatype - * Error messages are supressed - * - * Modifications: - * Neil Fortner - * 13 October 2008 - * Function basically rewritten. No longer directly opens the target file, - * now initializes a new set of tables for the external file. No longer - * dumps on a trial and error basis, but errors are still suppressed. + * Function does directly open the target file, + * it initializes a new set of tables for the external file. + * Errors are suppressed. * *------------------------------------------------------------------------- */ diff --git a/tools/src/h5dump/h5dump_xml.c b/tools/src/h5dump/h5dump_xml.c index be9e727..0868467 100644 --- a/tools/src/h5dump/h5dump_xml.c +++ b/tools/src/h5dump/h5dump_xml.c @@ -1778,12 +1778,10 @@ xml_dump_dataspace(hid_t space) * the h5tools library. * * Return: void - * - * Programmer: REMcG *------------------------------------------------------------------------- */ void -xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset, int H5_ATTR_UNUSED pindex) +xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED *sset, int H5_ATTR_UNUSED pindex) { hid_t space = -1; hid_t type = -1; @@ -1862,7 +1860,7 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset, datactx.need_prefix = TRUE; datactx.indent_level = ctx.indent_level; datactx.cur_column = ctx.cur_column; - status = h5tools_dump_dset(rawoutstream, outputformat, &datactx, obj_id, NULL); + status = h5tools_dump_dset(rawoutstream, outputformat, &datactx, obj_id); } } else { @@ -3579,12 +3577,10 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) * Purpose: Dump a description of an HDF5 dataset in XML. * * Return: void - * - * Programmer: REMcG *------------------------------------------------------------------------- */ void -xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * sset) +xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED *sset) { hid_t type; hid_t space; diff --git a/tools/src/h5ls/h5ls.c b/tools/src/h5ls/h5ls.c index 5c9c693..d1d913f 100644 --- a/tools/src/h5ls/h5ls.c +++ b/tools/src/h5ls/h5ls.c @@ -91,7 +91,7 @@ static h5tool_format_t ls_dataformat = { "", /*line_suf */ "", /*line_sep */ 1, /*line_multi_new */ - "", /*line_indent */ + " ", /*line_indent */ 0, /*skip_first */ @@ -918,6 +918,7 @@ print_enum_type(h5tools_str_t *buffer, hid_t type, int ind) H5free_memory(name[i]); HDfree(name); HDfree(value); + H5Tclose(super); return FALSE; } @@ -1082,7 +1083,10 @@ print_reference_type(h5tools_str_t *buffer, hid_t type, int H5_ATTR_UNUSED ind) if (H5T_REFERENCE != H5Tget_class(type)) return FALSE; - if (H5Tequal(type, H5T_STD_REF_OBJ) == TRUE) { + if (H5Tequal(type, H5T_STD_REF) == TRUE) { + h5tools_str_append(buffer, "standard reference"); + } + else if (H5Tequal(type, H5T_STD_REF_OBJ) == TRUE) { h5tools_str_append(buffer, "object reference"); } else if (H5Tequal(type, H5T_STD_REF_DSETREG) == TRUE) { @@ -1285,6 +1289,233 @@ print_type(h5tools_str_t *buffer, hid_t type, int ind) h5tools_str_append(buffer,"%lu-byte class-%u unknown", (unsigned long)H5Tget_size(type), (unsigned)data_class); } +/* + * + */ +static void +dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t container, H5R_ref_t *ref_buf, int ndims) +{ + H5TOOLS_ERR_INIT(int, SUCCEED) + hid_t new_obj_id = H5I_INVALID_HID; + hid_t new_obj_sid = H5I_INVALID_HID; + hsize_t elmt_counter = 0; /*counts the # elements printed. */ + size_t ncols = 80; /* available output width */ + size_t i; + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t datactx; /* print context */ + + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); + + datactx = *ctx; /* print context */ + /* Assume entire data space to be printed */ + if (datactx.ndims > 0) + for (i = 0; i < (size_t)datactx.ndims; i++) + datactx.p_min_idx[i] = 0; + datactx.need_prefix = TRUE; + + HDmemset(&buffer, 0, sizeof(h5tools_str_t)); + for(i = 0; i < ndims; i++, datactx.cur_elmt++, elmt_counter++) { + H5O_type_t obj_type; /* Object type */ + H5R_type_t ref_type; /* Reference type */ + + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "reference loop:%d with curr_pos=%ld", i, curr_pos); + + datactx.need_prefix = TRUE; + h5tools_str_reset(&buffer); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "reference loop - h5tools_str_sprint with H5T_STD_REF:%d", i); + h5tools_str_sprint(&buffer, info, container, H5T_STD_REF, &ref_buf[i], &datactx); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, (hsize_t)ndims); + + ref_type = H5Rget_type((const H5R_ref_t *)&ref_buf[i]); + switch (ref_type) { + case H5R_OBJECT1: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_OBJECT1"); + if (H5Rget_obj_type3((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_DATASET: + if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + datactx.indent_level++; + h5tools_dump_dset(stream, info, &datactx, new_obj_id); + datactx.indent_level--; + if(H5Dclose(new_obj_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dclose H5R_OBJECT1:H5O_TYPE_DATASET failed"); + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rdestroy H5R_OBJECT1:H5O_TYPE_DATASET failed"); + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Ropen_object H5R_OBJECT1:H5O_TYPE_DATASET failed"); + break; + + case H5O_TYPE_GROUP: + case H5O_TYPE_NAMED_DATATYPE: + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + break; + } /* end switch */ + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rget_obj_type3 H5R_OBJECT1 failed"); + break; + case H5R_DATASET_REGION1: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_DATASET_REGION1"); + if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + datactx.indent_level++; + h5tools_dump_dset(stream, info, &datactx, new_obj_id); + datactx.indent_level--; + if(H5Dclose(new_obj_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dclose H5R_DATASET_REGION1 failed"); + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rdestroy H5R_DATASET_REGION1 failed"); + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Ropen_object H5R_DATASET_REGION1 failed"); + break; + case H5R_OBJECT2: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_OBJECT2"); + if (H5Rget_obj_type3((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_GROUP: + break; + + case H5O_TYPE_DATASET: + if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + datactx.indent_level++; + h5tools_dump_dset(stream, info, &datactx, new_obj_id); + datactx.indent_level--; + if(H5Oclose(new_obj_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Oclose H5R_OBJECT2 failed"); + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rdestroy H5R_OBJECT2 failed"); + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Ropen_object H5R_OBJECT2 failed"); + break; + + case H5O_TYPE_NAMED_DATATYPE: + break; + + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + break; + } /* end switch */ + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rget_obj_type3 H5R_OBJECT2 failed"); + break; + case H5R_DATASET_REGION2: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_DATASET_REGION2"); + + if (info->line_ncols > 0) + ncols = info->line_ncols; + + /* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */ + if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0) + H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, H5E_tools_min_id_g, + "H5Ropen_object H5R_DATASET_REGION2 failed"); + else { + if((new_obj_sid = H5Ropen_region((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "NULL H5R_DATASET_REGION2"); + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " {"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + + datactx.need_prefix = TRUE; + datactx.indent_level++; + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "NULL"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + datactx.indent_level--; + datactx.need_prefix = TRUE; + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "}"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } + else { + H5S_sel_type region_type; + + region_type = H5Sget_select_type(new_obj_sid); + if(region_type == H5S_SEL_POINTS) { + /* Print point information */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5S_SEL_POINTS H5R_DATASET_REGION2"); + h5tools_dump_region_data_points(new_obj_sid, new_obj_id, stream, info, &datactx, + &buffer, &curr_pos, ncols, i, elmt_counter); + } + else if(region_type == H5S_SEL_HYPERSLABS) { + /* Print block information */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "H5S_SEL_HYPERSLABS H5R_DATASET_REGION2"); + h5tools_dump_region_data_blocks(new_obj_sid, new_obj_id, stream, info, &datactx, + &buffer, &curr_pos, ncols, i, elmt_counter); + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "invalid region type"); + } /* end else to if (h5tools_is_zero(... */ + if(H5Sclose(new_obj_sid) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose H5R_DATASET_REGION2 failed"); + } + else + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Ropen_region H5R_DATASET_REGION2 failed"); + if(H5Dclose(new_obj_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dclose H5R_DATASET_REGION2 failed"); + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rdestroy H5R_DATASET_REGION2 failed"); + } + break; + case H5R_ATTR: + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ref_type is H5R_ATTR"); + if((new_obj_id = H5Ropen_attr((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + h5tools_dump_region_attribute(new_obj_id, stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + if(H5Aclose(new_obj_id) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Aclose H5R_ATTR failed"); + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rdestroy H5R_ATTR failed"); + } + else { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "NULL H5R_ATTR"); + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " {"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + + datactx.need_prefix = TRUE; + datactx.indent_level++; + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "NULL"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + datactx.indent_level--; + datactx.need_prefix = TRUE; + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "}"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + + H5TOOLS_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Ropen_attr H5R_ATTR failed"); + } + break; + case H5R_BADTYPE: + case H5R_MAXTYPE: + default: + break; + } /* end switch */ + + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "finished reference loop:%d",i); + } /* end for(i = 0; i < ndims; i++, ctx->cur_elmt++, elmt_counter++) */ +done: + h5tools_str_close(&buffer); + + PRINTVALSTREAM(stream, "\n"); + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); +} /*------------------------------------------------------------------------- * Function: dump_dataset_values @@ -1297,23 +1528,39 @@ print_type(h5tools_str_t *buffer, hid_t type, int ind) static void dump_dataset_values(hid_t dset) { + H5TOOLS_ERR_INIT(herr_t, SUCCEED) + hid_t f_type = H5I_INVALID_HID; + hid_t new_obj_id = H5I_INVALID_HID; + hid_t new_obj_sid = H5I_INVALID_HID; + hsize_t total_size[H5S_MAX_RANK]; + hsize_t nelmts = 1; + hsize_t elmt_counter = 0; /*counts the # elements printed. */ + int ndims; + size_t i; + size_t size; char string_prefix[64]; static char fmt_double[16]; static char fmt_float[16]; + size_t ncols = 80; /* available output width */ hsize_t curr_pos = 0; /* total data element position */ h5tools_str_t buffer; /* string into which to render */ h5tools_context_t ctx; /* print context */ h5tool_format_t outputformat; h5tool_format_t *info = &ls_dataformat; + H5R_ref_t *ref_buf = NULL; + + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); - hid_t f_type = H5Dget_type(dset); - size_t size = H5Tget_size(f_type); + f_type = H5Dget_type(dset); + size = H5Tget_size(f_type); HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); outputformat = *info; outputformat.line_1st = NULL; + outputformat.idx_fmt = ""; if (simple_output_g) { outputformat.idx_fmt = ""; outputformat.line_per_line = 1; @@ -1345,7 +1592,188 @@ dump_dataset_values(hid_t dset) else { outputformat.line_ncols = (unsigned)width_g; } - if (label_g) outputformat.cmpd_name = "%s="; + if (label_g) + outputformat.cmpd_name = "%s="; + outputformat.line_pre = " %s "; + outputformat.line_cont = " %s "; + outputformat.str_repeat = 8; + + outputformat.arr_pre = NULL; + outputformat.arr_suf = NULL; + outputformat.arr_sep = NULL; + + outputformat.cmpd_pre = NULL; + outputformat.cmpd_suf = NULL; + outputformat.cmpd_sep = NULL; + + outputformat.vlen_sep = NULL; + outputformat.vlen_pre = NULL; + outputformat.vlen_suf = NULL; + outputformat.vlen_end = NULL; + } + outputformat.arr_linebreak = 0; + /* Floating point types should display full precision */ + HDsnprintf(fmt_float, sizeof(fmt_float), "%%1.%dg", FLT_DIG); + outputformat.fmt_float = fmt_float; + HDsnprintf(fmt_double, sizeof(fmt_double), "%%1.%dg", DBL_DIG); + outputformat.fmt_double = fmt_double; + + if (hexdump_g) { + /* Print all data in hexadecimal format if the `-x' or `--hexdump' + * command line switch was given. */ + outputformat.raw = TRUE; + } + else if (string_g && 1 == size && H5T_INTEGER == H5Tget_class(f_type)) { + /* Print 1-byte integer data as an ASCI character string instead of + * integers if the `-s' or `--string' command-line option was given. */ + outputformat.ascii = TRUE; + outputformat.elmt_suf1 = ""; + outputformat.elmt_suf2 = ""; + HDsnprintf(string_prefix, sizeof(string_prefix), "%s\"", outputformat.line_pre); + outputformat.line_pre = string_prefix; + outputformat.line_suf = "\""; + } + info = &outputformat; + + ctx.indent_level = 1; + ctx.cur_column = (size_t)curr_pos; + /* Print all the values. */ + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " Data:\n"); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + ctx.need_prefix = TRUE; + ctx.cur_column = (size_t)curr_pos; + if (H5Tget_class(f_type) == H5T_REFERENCE) { + hid_t space = H5Dget_space(dset); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "reference class type"); + if (!H5Tequal(f_type, H5T_STD_REF) && !H5Tequal(f_type, H5T_STD_REF_DSETREG) && !H5Tequal(f_type, H5T_STD_REF_OBJ)) { + HGOTO_DONE(SUCCEED); + } + + ndims = (int)H5Sget_simple_extent_npoints(space); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ndims=%d - ctx.ndims=%d", ndims, ctx.ndims); + + /* Assume entire data space to be printed */ + if (ctx.ndims > 0) + for (i = 0; i < (size_t)ctx.ndims; i++) + ctx.p_min_idx[i] = 0; + + H5Sget_simple_extent_dims(space, total_size, NULL); + H5Sclose(space); + if (ctx.ndims > 0) + init_acc_pos(&ctx, total_size); + ctx.need_prefix = TRUE; + + if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), ndims))) { + if(H5Dread(dset, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, ref_buf) < 0) { + HDfree(ref_buf); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread reference failed"); + } + dump_reference(rawoutstream, info, &ctx, dset, ref_buf, ndims); + HDfree(ref_buf); + } + } + else { + if (h5tools_dump_dset(rawoutstream, info, &ctx, dset) < 0) { + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " Unable to print data."); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + } + } +done: + H5Tclose(f_type); + + h5tools_str_close(&buffer); + + PRINTVALSTREAM(rawoutstream, "\n"); + + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); +} + + +/*------------------------------------------------------------------------- + * Function: dump_attribute_values + * + * Purpose: Prints all values of a attribute. + * + * Return: void + *------------------------------------------------------------------------- + */ +static void +dump_attribute_values(hid_t attr, const char *attr_name) +{ + H5TOOLS_ERR_INIT(herr_t, SUCCEED) + hid_t f_type = H5I_INVALID_HID; + hid_t p_type = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; + hid_t new_obj_id = H5I_INVALID_HID; + hid_t new_obj_sid = H5I_INVALID_HID; + hsize_t total_size[H5S_MAX_RANK]; + hsize_t nelmts = 1; + hsize_t elmt_counter = 0; /*counts the # elements printed. */ + hsize_t temp_need; + size_t need; + int ndims; + size_t i; + size_t size; + void *buf; + char string_prefix[64]; + static char fmt_double[16]; + static char fmt_float[16]; + size_t ncols = 80; /* available output width */ + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ + h5tool_format_t outputformat; + h5tool_format_t *info = &ls_dataformat; + H5R_ref_t *ref_buf = NULL; + + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); + + f_type = H5Aget_type(attr); + size = H5Tget_size(f_type); + + HDmemset(&ctx, 0, sizeof(ctx)); + HDmemset(&buffer, 0, sizeof(h5tools_str_t)); + + outputformat = *info; + outputformat.line_1st = NULL; + outputformat.idx_fmt = ""; + if (simple_output_g) { + outputformat.idx_fmt = ""; + outputformat.line_per_line = 1; + outputformat.line_multi_new = 0; + outputformat.line_pre = " "; + outputformat.line_cont = " "; + + outputformat.arr_pre = ""; + outputformat.arr_suf = ""; + outputformat.arr_sep = " "; + + if (!label_g) { + outputformat.cmpd_pre = ""; + outputformat.cmpd_suf = ""; + } + outputformat.cmpd_sep = " "; + + if (label_g) + outputformat.cmpd_name = "%s="; + + outputformat.elmt_suf1 = " "; + outputformat.str_locale = ESCAPE_HTML; + + } + else { + if (no_line_wrap_g) { + outputformat.line_per_line = 1; + } + else { + outputformat.line_ncols = (unsigned)width_g; + } + if (label_g) + outputformat.cmpd_name = "%s="; outputformat.line_pre = " %s "; outputformat.line_cont = " %s "; outputformat.str_repeat = 8; @@ -1389,25 +1817,96 @@ dump_dataset_values(hid_t dset) ctx.indent_level = 2; ctx.cur_column = (size_t)curr_pos; + /* Print all the values. */ h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " Data:\n"); + h5tools_str_append(&buffer, " Data:\n"); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + + space = H5Aget_space(attr); + ctx.need_prefix = TRUE; ctx.cur_column = (size_t)curr_pos; - if (h5tools_dump_dset(rawoutstream, info, &ctx, dset, NULL) < 0) { - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " Unable to print data."); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + if (H5Tget_class(f_type) == H5T_REFERENCE) { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "reference class type"); + if (!H5Tequal(f_type, H5T_STD_REF) && !H5Tequal(f_type, H5T_STD_REF_DSETREG) && !H5Tequal(f_type, H5T_STD_REF_OBJ)) { + HGOTO_DONE(SUCCEED); + } + + ndims = (int)H5Sget_simple_extent_npoints(space); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "ndims=%d - ctx.ndims=%d", ndims, ctx.ndims); + + /* Assume entire data space to be printed */ + if (ctx.ndims > 0) + for (i = 0; i < (size_t)ctx.ndims; i++) + ctx.p_min_idx[i] = 0; + + H5Sget_simple_extent_dims(space, total_size, NULL); + H5Sclose(space); + if (ctx.ndims > 0) + init_acc_pos(&ctx, total_size); + + if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), ndims))) { + if(H5Aread(attr, H5T_STD_REF, ref_buf) >= 0) { + HDfree(ref_buf); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread reference failed"); + } + ctx.indent_level++; + dump_reference(rawoutstream, info, &ctx, attr, ref_buf, ndims); + ctx.indent_level--; + HDfree(ref_buf); + } } + else { + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "Attribute data read"); + if (hexdump_g) + p_type = H5Tcopy(f_type); + else + p_type = H5Tget_native_type(f_type, H5T_DIR_DEFAULT); + + if (p_type >= 0) { + /* VL data special information */ + unsigned int vl_data = 0; /* contains VL datatypes */ + + /* Check if we have VL data in the dataset's datatype */ + if (h5tools_detect_vlen(p_type) == TRUE) + vl_data = TRUE; + + temp_need = nelmts * MAX(H5Tget_size(f_type), H5Tget_size(p_type)); + need = (size_t)temp_need; + if((buf = HDmalloc(need)) != NULL) { + if(H5Aread(attr, p_type, buf) >= 0) { + ctx.indent_level++; + if (h5tools_dump_mem(rawoutstream, info, &ctx, attr, p_type, space, buf) < 0) { + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " Unable to print data."); + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + } + ctx.indent_level--; + } + + /* Reclaim any VL memory, if necessary */ + if (vl_data) + H5Treclaim(p_type, space, H5P_DEFAULT, buf); + HDfree(buf); + } + H5Tclose(p_type); + } /* end if */ + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "Attribute data read complete"); + } +done: + H5Sclose(space); H5Tclose(f_type); h5tools_str_close(&buffer); PRINTVALSTREAM(rawoutstream, "\n"); -} + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); +} /*------------------------------------------------------------------------- * Function: list_attr @@ -1422,27 +1921,33 @@ static herr_t list_attr(hid_t obj, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ainfo, void H5_ATTR_UNUSED *op_data) { + H5TOOLS_ERR_INIT(herr_t, SUCCEED); hid_t attr = H5I_INVALID_HID; hid_t space = H5I_INVALID_HID; hid_t type = H5I_INVALID_HID; - hid_t p_type = H5I_INVALID_HID; + hid_t new_obj_id = H5I_INVALID_HID; + hid_t new_obj_sid = H5I_INVALID_HID; hsize_t size[H5S_MAX_RANK]; hsize_t nelmts = 1; - hsize_t temp_need; - size_t need; int ndims; int i; - void *buf; H5S_class_t space_type; hsize_t curr_pos = 0; /* total data element position */ + hsize_t elmt_counter = 0; /*counts the # elements printed. */ h5tools_str_t buffer; /* string into which to render */ h5tools_context_t ctx; /* print context */ + size_t ncols = 80; /* available output width */ h5tool_format_t *info = &ls_dataformat; - h5tool_format_t outputformat; + + H5TOOLS_PUSH_STACK(); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter"); HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); + ctx.indent_level = 2; + ctx.cur_column = (size_t)curr_pos; + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, " Attribute: "); @@ -1455,6 +1960,7 @@ list_attr(hid_t obj, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ain /* Data space */ ndims = H5Sget_simple_extent_dims(space, size, NULL); space_type = H5Sget_simple_extent_type(space); + H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "Attribute ndims:%d", ndims); switch(space_type) { case H5S_SCALAR: /* scalar dataspace */ @@ -1489,100 +1995,25 @@ list_attr(hid_t obj, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ain /* Data type */ h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " Type: "); + h5tools_str_append(&buffer, " %-10s ", "Type:"); print_type(&buffer, type, 15); h5tools_str_append(&buffer, "\n"); h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); - /* Data */ - outputformat = *info; - - if (nelmts < 5) { - outputformat.idx_fmt = ""; - outputformat.line_1st = " Data: "; - outputformat.line_pre = " "; - outputformat.line_cont = " "; - outputformat.str_repeat = 8; - - } - else { - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " Data:\n"); - h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); - outputformat.line_1st = NULL; - outputformat.line_pre = " %s "; - outputformat.line_cont = " %s "; - outputformat.str_repeat = 8; - } - - outputformat.line_ncols = (unsigned)width_g; - if (label_g) - outputformat.cmpd_name = "%s="; - if (string_g && 1 == H5Tget_size(type) && H5T_INTEGER == H5Tget_class(type)) { - outputformat.ascii = TRUE; - outputformat.elmt_suf1 = ""; - outputformat.elmt_suf2 = ""; - outputformat.line_pre = " %s \""; - outputformat.line_suf = "\""; - } /* end if */ - - - outputformat.arr_pre = NULL; - outputformat.arr_suf = NULL; - outputformat.arr_sep = NULL; - - outputformat.cmpd_pre = NULL; - outputformat.cmpd_suf = NULL; - outputformat.cmpd_sep = NULL; - - outputformat.vlen_sep = NULL; - outputformat.vlen_pre = NULL; - outputformat.vlen_suf = NULL; - outputformat.vlen_end = NULL; - - info = &outputformat; - - if (space_type != H5S_NULL && space_type != H5S_NO_CLASS) { - if (hexdump_g) - p_type = H5Tcopy(type); - else - p_type = H5Tget_native_type(type, H5T_DIR_DEFAULT); - - if (p_type >= 0) { - /* VL data special information */ - unsigned int vl_data = 0; /* contains VL datatypes */ - - /* Check if we have VL data in the dataset's datatype */ - if (h5tools_detect_vlen(p_type) == TRUE) - vl_data = TRUE; - - temp_need = nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type)); - need = (size_t)temp_need; - if((buf = HDmalloc(need)) != NULL) { - if(H5Aread(attr, p_type, buf) >= 0) { - ctx.need_prefix = TRUE; - ctx.indent_level = 2; - ctx.cur_column = (size_t)curr_pos; - h5tools_dump_mem(rawoutstream, info, &ctx, attr, p_type, space, buf); - } - - /* Reclaim any VL memory, if necessary */ - if (vl_data) - H5Treclaim(p_type, space, H5P_DEFAULT, buf); - - HDfree(buf); - } - H5Tclose(p_type); - } /* end if */ - } - H5Sclose(space); H5Tclose(type); + + h5tools_str_close(&buffer); + + if (data_g) + dump_attribute_values(attr, attr_name); H5Aclose(attr); } - h5tools_str_close(&buffer); + else + h5tools_str_close(&buffer); - PRINTVALSTREAM(rawoutstream, "\n"); + H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit"); + H5TOOLS_POP_STACK(); return 0; } @@ -1796,7 +2227,10 @@ dataset_list2(hid_t dset, const char H5_ATTR_UNUSED *name) break; case H5T_REFERENCE: - if (H5Tequal(type, H5T_STD_REF_DSETREG)) { + if (H5Tequal(dset, H5T_STD_REF)) { + h5tools_str_append(&buffer, "reference information not available"); + } + else if (H5Tequal(dset, H5T_STD_REF_DSETREG)) { h5tools_str_append(&buffer, "information not available"); } break; @@ -1835,8 +2269,10 @@ dataset_list2(hid_t dset, const char H5_ATTR_UNUSED *name) h5tools_str_append(&buffer, "}\n"); } /* end for */ } /* end if */ + h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); /* Print data type */ + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, " %-10s ", "Type:"); print_type(&buffer, type, 15); h5tools_str_append(&buffer, "\n"); diff --git a/tools/src/h5repack/h5repack.c b/tools/src/h5repack/h5repack.c index 5f688d9..971589e 100644 --- a/tools/src/h5repack/h5repack.c +++ b/tools/src/h5repack/h5repack.c @@ -228,7 +228,7 @@ copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, t hid_t ret_value = -1; /* The identifier of the named dtype in the out file */ if (H5Oget_info2(type_in, &oinfo, H5O_INFO_BASIC) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info failed"); if (*named_dt_head_p) { /* Stack already exists, search for the datatype */ @@ -244,7 +244,7 @@ copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, t if (travt->objs[i].type == H5TRAV_TYPE_NAMED_DATATYPE) { /* Push onto the stack */ if (NULL == (dt = (named_dt_t *)HDmalloc(sizeof(named_dt_t)))) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "buffer allocation failed failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "buffer allocation failed failed"); dt->next = *named_dt_head_p; *named_dt_head_p = dt; @@ -266,7 +266,7 @@ copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, t if (!dt_ret) { /* Push the new datatype onto the stack */ if (NULL == (dt_ret = (named_dt_t *)HDmalloc(sizeof(named_dt_t)))) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "buffer allocation failed failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "buffer allocation failed failed"); dt_ret->next = *named_dt_head_p; *named_dt_head_p = dt_ret; @@ -284,9 +284,9 @@ copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, t else dt_ret->id_out = H5Tcopy(type_in); if (dt_ret->id_out < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type-H5Tcopy failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type-H5Tcopy failed"); if (H5Tcommit_anon(fidout, dt_ret->id_out, H5P_DEFAULT, H5P_DEFAULT) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tcommit_anon failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tcommit_anon failed"); } /* end if named datatype not yet in output file */ /* Set return value */ @@ -296,7 +296,7 @@ copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, t * to close it. (TODO: fix scope envy) */ if (H5Iinc_ref(ret_value) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Iinc_ref failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Iinc_ref failed"); done: return ret_value; @@ -317,7 +317,7 @@ named_datatype_free(named_dt_t **named_dt_head_p, int ignore_err) while (dt) { /* Pop the datatype off the stack and free it */ if (H5Tclose(dt->id_out) < 0 && !ignore_err) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); dt = dt->next; HDfree(*named_dt_head_p); *named_dt_head_p = dt; @@ -363,7 +363,7 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_ H5T_class_t type_class = -1; if (H5Oget_info2(loc_in, &oinfo, H5O_INFO_NUM_ATTRS) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info failed"); /*------------------------------------------------------------------------- * copy all attributes @@ -372,33 +372,33 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_ for (u = 0; u < (unsigned) oinfo.num_attrs; u++) { /* open attribute */ if ((attr_id = H5Aopen_by_idx(loc_in, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t) u, H5P_DEFAULT, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx failed"); if (H5Aget_name(attr_id, (size_t) 255, name) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); /* get the file datatype */ if ((ftype_id = H5Aget_type(attr_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_type failed"); /* Check if the datatype is committed */ if ((is_named = H5Tcommitted(ftype_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tcommitted failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tcommitted failed"); if (is_named && travt) { hid_t fidout = -1; /* Create out file id */ if ((fidout = H5Iget_file_id(loc_out)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Iget_file_id failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Iget_file_id failed"); /* Copy named dt */ if ((wtype_id = copy_named_datatype(ftype_id, fidout, named_dt_head_p, travt, options)) < 0) { H5Fclose(fidout); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_named_datatype failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_named_datatype failed"); } if (H5Fclose(fidout) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fclose failed"); } /* end if datatype is committed and we have a traversal table */ else { if (options->use_native == 1) @@ -409,18 +409,18 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_ /* get the dataspace handle */ if ((space_id = H5Aget_space(attr_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_space failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_space failed"); /* get dimensions */ if ((rank = H5Sget_simple_extent_dims(space_id, dims, NULL)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); nelmts = 1; for (j = 0; j < rank; j++) nelmts *= dims[j]; if ((msize = H5Tget_size(wtype_id)) == 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); /*--------------------------------------------------------------------- * object references are a special case. We cannot just copy the @@ -464,10 +464,10 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_ buf = (void *)HDmalloc((size_t)(nelmts * msize)); if (buf == NULL) { - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); } /* end if */ if (H5Aread(attr_id, wtype_id, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); /*----------------------------------------------------------------- * copy @@ -475,13 +475,13 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_ */ if ((attr_out = H5Acreate2(loc_out, name, wtype_id, space_id, H5P_DEFAULT, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Acreate2 failed on ,%s>", name); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Acreate2 failed on ,%s>", name); if (H5Awrite(attr_out, wtype_id, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Awrite failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Awrite failed"); /*close*/ if (H5Aclose(attr_out) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aclose failed"); /* Check if we have VL data and string in the attribute's datatype that must * be reclaimed */ @@ -499,16 +499,16 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_ *--------------------------------------------------------------------- */ if (H5Sclose(space_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); space_id = -1; if (H5Tclose(wtype_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); wtype_id = -1; if (H5Tclose(ftype_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); ftype_id = -1; if (H5Aclose(attr_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aclose failed"); attr_id = -1; } /* for u (each attribute) */ @@ -546,7 +546,7 @@ done: static int check_options(pack_opt_t *options) { - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + int ret_value = 0; /*no need to LEAVE() on ERROR: H5TOOLS_ERR_INIT(int, SUCCEED) */ unsigned int i; int k, j, has_cp = 0, has_ck = 0; char slayout[30]; @@ -573,7 +573,7 @@ check_options(pack_opt_t *options) break; case H5D_LAYOUT_ERROR: case H5D_NLAYOUTS: - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid layout"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid layout"); default: strcpy(slayout, "invalid layout\n"); HGOTO_DONE(FAIL); @@ -611,7 +611,7 @@ check_options(pack_opt_t *options) } /* end for each object in options */ if (options->all_layout == 1 && has_ck) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid chunking input: 'all' option is present with other objects"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid chunking input: 'all' option is present with other objects"); /*------------------------------------------------------------------------- * Objects to filter @@ -669,7 +669,7 @@ check_options(pack_opt_t *options) } /* end for each object in options table */ if (options->all_filter == 1 && has_cp) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid compression input: 'all' option is present with other objects"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid compression input: 'all' option is present with other objects"); /*------------------------------------------------------------------------- * Check options for the latest format @@ -677,14 +677,14 @@ check_options(pack_opt_t *options) */ if (options->grp_compact < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid maximum number of links to store as header messages"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid maximum number of links to store as header messages"); if (options->grp_indexed < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid minimum number of links to store in the indexed format"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid minimum number of links to store in the indexed format"); if (options->grp_indexed > options->grp_compact) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "minimum indexed size is greater than the maximum compact size"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "minimum indexed size is greater than the maximum compact size"); for (i = 0; i < 8; i++) if (options->msg_size[i] < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid shared message size"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid shared message size"); /*------------------------------------------------------------------------ * Verify new user userblock options; file name must be present @@ -698,7 +698,7 @@ check_options(pack_opt_t *options) } if (options->ublock_filename == NULL && options->ublock_size != 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "file name missing for user block", options->ublock_filename); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "file name missing for user block", options->ublock_filename); /*------------------------------------------------------------------------ * Verify alignment options; threshold is zero default but alignment not @@ -706,7 +706,7 @@ check_options(pack_opt_t *options) */ if (options->alignment == 0 && options->threshold != 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "alignment for H5Pset_alignment missing"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "alignment for H5Pset_alignment missing"); done: return ret_value; @@ -730,7 +730,7 @@ check_objects(const char* fname, pack_opt_t *options) unsigned int i; int ifil; trav_table_t *travt = NULL; - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + int ret_value = 0; /*no need to LEAVE() on ERROR: H5TOOLS_ERR_INIT(int, SUCCEED) */ /* nothing to do */ if (options->op_tbl->nelems == 0) @@ -741,7 +741,7 @@ check_objects(const char* fname, pack_opt_t *options) *------------------------------------------------------------------------- */ if ((fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, 0)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5tools_fopen failed <%s>: %s", fname, H5FOPENERROR); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5tools_fopen failed <%s>: %s", fname, H5FOPENERROR); /*------------------------------------------------------------------------- * get the list of objects in the file @@ -755,7 +755,7 @@ check_objects(const char* fname, pack_opt_t *options) /* get the list of objects in the file */ if (h5trav_gettable(fid, travt) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5trav_gettable failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5trav_gettable failed"); /*------------------------------------------------------------------------- * compare with user supplied list @@ -774,14 +774,14 @@ check_objects(const char* fname, pack_opt_t *options) /* the input object names are present in the file and are valid */ if (h5trav_getindext(name, travt) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "%s Could not find <%s> in file <%s>. Exiting...\n", + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "%s Could not find <%s> in file <%s>. Exiting...\n", (options->verbose ? "\n" : ""), name, fname); if (options->verbose) HDprintf("...Found\n"); for (ifil = 0; ifil < obj.nfilters; ifil++) { if (obj.filter[ifil].filtn < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid filter"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid filter"); /* check for extra filter conditions */ switch (obj.filter[ifil].filtn) { /* chunk size must be smaller than pixels per block */ @@ -800,20 +800,20 @@ check_objects(const char* fname, pack_opt_t *options) } else { if ((did = H5Dopen2(fid, name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); if ((sid = H5Dget_space(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); if ((rank = H5Sget_simple_extent_ndims(sid)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); HDmemset(dims, 0, sizeof dims); if (H5Sget_simple_extent_dims(sid, dims, NULL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); for (j = 0; j < rank; j++) csize *= dims[j]; if (H5Sclose(sid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); if (H5Dclose(did) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); } if (csize < ppb) { diff --git a/tools/src/h5repack/h5repack_copy.c b/tools/src/h5repack/h5repack_copy.c index 24f67db..5d41908 100644 --- a/tools/src/h5repack/h5repack_copy.c +++ b/tools/src/h5repack/h5repack_copy.c @@ -86,59 +86,59 @@ copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options) *------------------------------------------------------------------------- */ if ((fidin = h5tools_fopen(fnamein, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t) 0)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5tools_fopen failed <%s>: %s", fnamein, H5FOPENERROR); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5tools_fopen failed <%s>: %s", fnamein, H5FOPENERROR); /* get user block size and file space strategy/persist/threshold */ { if ((fcpl_in = H5Fget_create_plist(fidin)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fget_create_plist failed to retrieve file creation property list"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fget_create_plist failed to retrieve file creation property list"); if (H5Pget_userblock(fcpl_in, &ub_size) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_userblock failed to retrieve userblock size"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_userblock failed to retrieve userblock size"); /* If the -S option is not set, get "strategy" from the input file */ if(H5Pget_file_space_strategy(fcpl_in, &in_strategy, &in_persist, &in_threshold) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_strategy failed to retrieve file space strategy"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_strategy failed to retrieve file space strategy"); /* If the -G option is not set, get "pagesize" from the input file */ if(H5Pget_file_space_page_size(fcpl_in, &in_pagesize) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_page_size failed to retrieve file space threshold"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_page_size failed to retrieve file space threshold"); /* open root group */ if ((grp_in = H5Gopen2(fidin, "/", H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed"); /* get root group creation property list */ if ((gcpl_in = H5Gget_create_plist(grp_in)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gget_create_plist failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gget_create_plist failed"); /* query and set the group creation properties */ if (H5Pget_link_creation_order(gcpl_in, &crt_order_flags) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_link_creation_order failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_link_creation_order failed"); if (H5Pclose(fcpl_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed to close property list"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed to close property list"); } if(options->latest) options->low_bound = options->high_bound = H5F_LIBVER_LATEST; /* Create file access property list */ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create file access property list"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create file access property list"); /* It can be default, latest or other settings by users */ if(H5Pset_libver_bounds(fapl, options->low_bound, options->high_bound) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_libver_bounds failed to set format version bounds"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_libver_bounds failed to set format version bounds"); /* Check if we need to create a non-default file creation property list */ if (options->low_bound >= H5F_LIBVER_V18 || ub_size > 0) { /* Create file creation property list */ if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create a file creation property list"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create a file creation property list"); if (ub_size > 0) if (H5Pset_userblock(fcpl, ub_size) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_userblock failed to set non-default userblock size"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_userblock failed to set non-default userblock size"); if (options->low_bound >= H5F_LIBVER_V18) { unsigned i = 0, nindex = 0, mesg_type_flags[5], min_mesg_sizes[5]; @@ -146,7 +146,7 @@ copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options) /* Adjust group creation parameters for root group */ /* (So that it is created in "dense storage" form) */ if (H5Pset_link_phase_change(fcpl, (unsigned) options->grp_compact, (unsigned) options->grp_indexed) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_link_phase_change failed to adjust group creation parameters for root group"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_link_phase_change failed to adjust group creation parameters for root group"); for (i = 0; i < 5; i++) { if (options->msg_size[i] > 0) { @@ -182,12 +182,12 @@ copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options) if (nindex > 0) { if (H5Pset_shared_mesg_nindexes(fcpl, nindex) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_shared_mesg_nindexes failed to set the number of shared object header message indexes"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_shared_mesg_nindexes failed to set the number of shared object header message indexes"); /* msg_size[0]=dataspace, 1=datatype, 2=file value, 3=filter pipleline, 4=attribute */ for (i = 0; i < (nindex - 1); i++) if (H5Pset_shared_mesg_index(fcpl, i, mesg_type_flags[i], min_mesg_sizes[i]) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_shared_mesg_index failed to configure the specified shared object header message index"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_shared_mesg_index failed to configure the specified shared object header message index"); } /* if (nindex>0) */ } /* end if */ @@ -205,11 +205,11 @@ print_user_block(fnamein, fidin); if (fcpl == H5P_DEFAULT) /* create a file creation property list */ if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create a file creation property list"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create a file creation property list"); /* set user block size */ if (H5Pset_userblock(fcpl, options->ublock_size) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_userblock failed to set userblock size"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_userblock failed to set userblock size"); } /*------------------------------------------------------------------------- @@ -221,10 +221,10 @@ print_user_block(fnamein, fidin); if (fapl == H5P_DEFAULT) /* create a file access property list */ if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create file access property list"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create file access property list"); if (H5Pset_alignment(fapl, options->threshold, options->alignment) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_alignment failed to set alignment"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_alignment failed to set alignment"); } /*------------------------------------------------------------------------- @@ -236,10 +236,10 @@ print_user_block(fnamein, fidin); if (fapl == H5P_DEFAULT) /* create a file access property list */ if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create file access property list"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create file access property list"); if (H5Pset_meta_block_size(fapl, options->meta_block_size) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_meta_block_size failed to set metadata block size"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_meta_block_size failed to set metadata block size"); } /*------------------------------------------------------------------------- @@ -251,10 +251,10 @@ print_user_block(fnamein, fidin); if (fcpl == H5P_DEFAULT) /* create a file creation property list */ if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create a file creation property list"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create a file creation property list"); if(H5Pset_link_creation_order(fcpl, crt_order_flags ) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_link_creation_order failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_link_creation_order failed"); /* Set file space info to those from input file */ set_strategy = in_strategy; @@ -279,7 +279,7 @@ print_user_block(fnamein, fidin); /* Set file space information as specified */ if(H5Pset_file_space_strategy(fcpl, set_strategy, set_persist, set_threshold) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_file_space_strategy failed to set file space strategy"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_file_space_strategy failed to set file space strategy"); if(options->fs_pagesize == -1) /* A "0" file space page size is specified by user */ set_pagesize = (hsize_t)0; @@ -288,7 +288,7 @@ print_user_block(fnamein, fidin); if(set_pagesize != FS_PAGESIZE_DEF) /* Set non-default file space page size as specified */ if(H5Pset_file_space_page_size(fcpl, set_pagesize) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_file_space_page_size failed to set file space page size"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_file_space_page_size failed to set file space page size"); /*------------------------------------------------------------------------- * create the output file @@ -298,7 +298,7 @@ print_user_block(fnamein, fidin); HDprintf("Making new file ...\n"); if ((fidout = H5Fcreate(fnameout, H5F_ACC_TRUNC, fcpl, fapl)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fcreate could not create file <%s>:", fnameout); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fcreate could not create file <%s>:", fnameout); /*------------------------------------------------------------------------- * write a new user block if requested @@ -306,7 +306,7 @@ print_user_block(fnamein, fidin); */ if (options->ublock_size > 0) if (copy_user_block(options->ublock_filename, fnameout, options->ublock_size) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not copy user block. Exiting..."); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not copy user block. Exiting..."); /*------------------------------------------------------------------------- * get list of objects @@ -321,14 +321,14 @@ print_user_block(fnamein, fidin); if (travt) { /* get the list of objects in the file */ if (h5trav_gettable(fidin, travt) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5trav_gettable failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5trav_gettable failed"); /*------------------------------------------------------------------------- * do the copy *------------------------------------------------------------------------- */ if (do_copy_objects(fidin, fidout, travt, options) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "do_copy_objects from <%s> could not copy data to <%s>", fnamein, fnameout); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "do_copy_objects from <%s> could not copy data to <%s>", fnamein, fnameout); /*------------------------------------------------------------------------- * do the copy of referenced objects @@ -336,7 +336,7 @@ print_user_block(fnamein, fidin); *------------------------------------------------------------------------- */ if (do_copy_refobjs(fidin, fidout, travt, options) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "do_copy_refobjs from <%s> could not copy data to <%s>", fnamein, fnameout); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "do_copy_refobjs from <%s> could not copy data to <%s>", fnamein, fnameout); } /*------------------------------------------------------------------------- @@ -346,7 +346,7 @@ print_user_block(fnamein, fidin); if (ub_size > 0 && options->ublock_size == 0) if (copy_user_block(fnamein, fnameout, ub_size) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not copy user block. Exiting..."); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not copy user block. Exiting..."); done: H5E_BEGIN_TRY { @@ -425,7 +425,7 @@ get_hyperslab(hid_t dcpl_id, int rank_dset, hsize_t dims_dset[], /* get chunk dims */ rank_chunk = H5Pget_chunk(dcpl_id, rank_dset, dims_chunk); if (rank_chunk < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_chunk failed"); for (k = rank_dset; k > 0; --k) size_chunk *= dims_chunk[k - 1]; @@ -487,7 +487,7 @@ get_hyperslab(hid_t dcpl_id, int rank_dset, hsize_t dims_dset[], hslab_nbytes *= dims_hslab[k - 1]; if (hslab_nbytes <= 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "calculate total size for the hyperslab failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "calculate total size for the hyperslab failed"); } } } @@ -511,7 +511,7 @@ get_hyperslab(hid_t dcpl_id, int rank_dset, hsize_t dims_dset[], hslab_nbytes *= dims_hslab[k - 1]; if (hslab_nbytes <= 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "calculate total size for the hyperslab failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "calculate total size for the hyperslab failed"); } } @@ -649,22 +649,22 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, /* open input group */ if ((grp_in = H5Gopen2(fidin, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed"); /* get input group creation property list */ if ((gcpl_in = H5Gget_create_plist(grp_in)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gget_create_plist failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gget_create_plist failed"); /* query and set the group creation properties */ if (H5Pget_link_creation_order(gcpl_in, &crt_order_flags) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_link_creation_order failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_link_creation_order failed"); /* set up group creation property list */ if ((gcpl_out = H5Pcreate(H5P_GROUP_CREATE)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); if (H5Pset_link_creation_order(gcpl_out, crt_order_flags) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_link_creation_order failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_link_creation_order failed"); /*------------------------------------------------------------------------- * the root is a special case, we get an ID for the root group @@ -673,15 +673,15 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, */ if (HDstrcmp(travt->objs[i].name, "/") == 0) { if ((grp_out = H5Gopen2(fidout, "/", H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed"); } else { if (options->grp_compact > 0 || options->grp_indexed > 0) if (H5Pset_link_phase_change(gcpl_out, (unsigned) options->grp_compact, (unsigned) options->grp_indexed) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_link_phase_change failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_link_phase_change failed"); if ((grp_out = H5Gcreate2(fidout, travt->objs[i].name, H5P_DEFAULT, gcpl_out, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gcreate2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gcreate2 failed"); } /*------------------------------------------------------------------------- @@ -689,16 +689,16 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, *------------------------------------------------------------------------- */ if (copy_attr(grp_in, grp_out, &named_dt_head, travt, options) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); if (H5Pclose(gcpl_out) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if (H5Pclose(gcpl_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if (H5Gclose(grp_out) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); if (H5Gclose(grp_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); break; @@ -740,23 +740,23 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, /* early detection of references */ if ((dset_in = H5Dopen2(fidin, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); if ((ftype_id = H5Dget_type(dset_in)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); if (H5T_REFERENCE == H5Tget_class(ftype_id)) is_ref = 1; /* Check if the datatype is committed */ if ((is_named = H5Tcommitted(ftype_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tcommitted failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tcommitted failed"); if (is_named) if ((wtype_id = copy_named_datatype(ftype_id, fidout, &named_dt_head, travt, options)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_named_datatype failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_named_datatype failed"); if (H5Tclose(ftype_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); if (H5Dclose(dset_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); /*------------------------------------------------------------------------- * check if we should use H5Ocopy or not @@ -770,20 +770,20 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, int j; if ((dset_in = H5Dopen2(fidin, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); if ((f_space_id = H5Dget_space(dset_in)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); if ((ftype_id = H5Dget_type(dset_in)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); if ((dcpl_in = H5Dget_create_plist(dset_in)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); if ((rank = H5Sget_simple_extent_ndims(f_space_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); HDmemset(dims, 0, sizeof dims); if (H5Sget_simple_extent_dims(f_space_id, dims, NULL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); if (H5Dget_space_status(dset_in, &space_status) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space_status failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space_status failed"); /* If the input dataset has external storage, it must be contiguous. * Accordingly, there would be no filter or chunk properties to preserve, @@ -792,10 +792,10 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, */ if (H5Pget_external_count(dcpl_in)) { if ((dcpl_out = H5Pcreate(H5P_DATASET_CREATE)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); } else if ((dcpl_out = H5Pcopy(dcpl_in)) < 0) { - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcopy failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcopy failed"); } nelmts = 1; @@ -811,7 +811,7 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, } if ((msize = H5Tget_size(wtype_id)) == 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); /* size of current dset */ size_dset = nelmts * msize; @@ -848,7 +848,7 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, /* apply the filter */ if (apply_s) if (apply_filters(travt->objs[i].name, rank, dims, msize, dcpl_out, options, &has_filter) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "apply_filters failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "apply_filters failed"); /* only if layout change requested for entire file or * individual obj */ @@ -894,7 +894,7 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, HDprintf(" warning: could not create dataset <%s>. Applying original settings\n", travt->objs[i].name); if ((dset_out = H5Dcreate2(fidout, travt->objs[i].name, wtype_id, f_space_id, H5P_DEFAULT, dcpl_in, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dcreate2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dcreate2 failed"); apply_f = 0; } /* end if retry dataset create */ @@ -911,15 +911,15 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, if (buf != NULL) { if(H5Dread(dset_in, wtype_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); if(H5Dwrite(dset_out, wtype_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dwrite failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dwrite failed"); /* Check if we have VL data in the dataset's * datatype that must be reclaimed */ if (TRUE == H5Tdetect_class(wtype_id, H5T_VLEN)) if (H5Treclaim(wtype_id, f_space_id, H5P_DEFAULT, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Treclaim failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Treclaim failed"); if (buf != NULL) { /* TODO: is buf potentially released by H5Dvlen_reclaim()? */ HDfree(buf); @@ -965,11 +965,11 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, /* get hyperslab dims and size in byte */ if (get_hyperslab(dcpl_tmp, rank, dims, p_type_nbytes, hslab_dims, &hslab_nbytes) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "get_hyperslab failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "get_hyperslab failed"); hslab_buf = HDmalloc((size_t)hslab_nbytes); if (hslab_buf == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "can't allocate space for hyperslab"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "can't allocate space for hyperslab"); hslab_nelmts = hslab_nbytes / p_type_nbytes; hslab_space = H5Screate_simple(1, &hslab_nelmts, NULL); @@ -993,9 +993,9 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, } if (H5Sselect_hyperslab(f_space_id, H5S_SELECT_SET, hs_sel_offset, NULL, hs_sel_count, NULL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); if (H5Sselect_hyperslab(hslab_space, H5S_SELECT_SET, zero, NULL, &hs_select_nelmts, NULL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); } /* end if rank > 0 */ else { H5Sselect_all(f_space_id); @@ -1004,9 +1004,9 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, } /* end (else) rank == 0 */ if(H5Dread(dset_in, wtype_id, hslab_space, f_space_id, H5P_DEFAULT, hslab_buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); if(H5Dwrite(dset_out, wtype_id, hslab_space, f_space_id, H5P_DEFAULT, hslab_buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dwrite failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dwrite failed"); /* reclaim any VL memory, if necessary */ if (vl_data) @@ -1066,10 +1066,10 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, *------------------------------------------------------------------------- */ if (copy_attr(dset_in, dset_out, &named_dt_head, travt, options) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); if (H5Dclose(dset_out) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); } /* end if not a reference */ } /* end if h5tools_canreadf (filter availability check) */ @@ -1078,17 +1078,17 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, *------------------------------------------------------------------------- */ if (H5Tclose(ftype_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); if (H5Tclose(wtype_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); if (H5Pclose(dcpl_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if (H5Pclose(dcpl_out) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if (H5Sclose(f_space_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); if (H5Dclose(dset_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); } /*------------------------------------------------------------------------- * We do not have request for filter/chunking; use H5Ocopy instead @@ -1099,11 +1099,11 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, /* create property to pass copy options */ if ((pid = H5Pcreate(H5P_OBJECT_COPY)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); /* set options for object copy */ if (H5Pset_copy_object(pid, H5O_COPY_WITHOUT_ATTR_FLAG) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_copy_object failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_copy_object failed"); if (H5Ocopy(fidin, /* Source file or group identifier */ travt->objs[i].name, /* Name of the source object to be copied */ @@ -1111,25 +1111,25 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, travt->objs[i].name, /* Name of the destination object */ pid, /* Properties which apply to the copy */ H5P_DEFAULT) < 0) /* Properties which apply to the new hard link */ - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Ocopy failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Ocopy failed"); if (H5Pclose(pid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); /*------------------------------------------------------------------------- * Copy attrs manually *------------------------------------------------------------------------- */ if ((dset_in = H5Dopen2(fidin, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); if ((dset_out = H5Dopen2(fidout, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); if (copy_attr(dset_in, dset_out, &named_dt_head, travt, options) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); if (H5Dclose(dset_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); if (H5Dclose(dset_out) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); if (options->verbose) HDprintf(FORMAT_OBJ, "dset", travt->objs[i].name); @@ -1146,27 +1146,27 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, HDprintf(FORMAT_OBJ, "type", travt->objs[i].name); if ((type_in = H5Topen2(fidin, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Topen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Topen2 failed"); /* Copy the datatype anonymously */ if ((type_out = copy_named_datatype(type_in, fidout, &named_dt_head, travt, options)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_named_datatype failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_named_datatype failed"); /* Link in to group structure */ if (H5Lcreate_hard(type_out, ".", fidout, travt->objs[i].name, H5P_DEFAULT, H5P_DEFAULT) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Lcreate_hard failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Lcreate_hard failed"); /*------------------------------------------------------------------------- * copy attrs *------------------------------------------------------------------------- */ if (copy_attr(type_in, type_out, &named_dt_head, travt, options) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); if (H5Tclose(type_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); if (H5Tclose(type_out) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); type_out = -1; /* named datatypes stack, named_dt_head, manages allocation */ break; @@ -1185,14 +1185,14 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, HDprintf(FORMAT_OBJ, "link", travt->objs[i].name); if (H5Lcopy(fidin, travt->objs[i].name, fidout, travt->objs[i].name, H5P_DEFAULT, H5P_DEFAULT) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Lcopy failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Lcopy failed"); if (options->verbose) HDprintf(FORMAT_OBJ, "link", travt->objs[i].name); break; default: - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Object type not found"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "Object type not found"); } /* switch */ } /* end for each object to traverse */ } /* end if there are objects */ @@ -1361,9 +1361,9 @@ copy_user_block(const char *infile, const char *outfile, hsize_t size) /* Open files */ if ((infid = HDopen(infile, O_RDONLY)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDopen failed input file <%s>", infile); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDopen failed input file <%s>", infile); if ((outfid = HDopen(outfile, O_WRONLY)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDopen failed output file <%s>", outfile); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDopen failed output file <%s>", outfile); /* Copy the userblock from the input file to the output file */ while (size > 0) { @@ -1377,7 +1377,7 @@ copy_user_block(const char *infile, const char *outfile, hsize_t size) else nread = HDread(infid, rbuf, (size_t)size); if (nread < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDread failed to read userblock"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDread failed to read userblock"); /* Write buffer to destination file */ /* (compensating for interrupted writes & checking for errors, etc.) */ @@ -1390,7 +1390,7 @@ copy_user_block(const char *infile, const char *outfile, hsize_t size) nwritten = HDwrite(outfid, wbuf, (size_t)nbytes); } while (-1 == nwritten && EINTR == errno); if (-1 == nwritten) /* error */ - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDwrite failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDwrite failed"); HDassert(nwritten > 0); HDassert(nwritten <= nbytes); @@ -1435,20 +1435,20 @@ print_user_block(const char *filename, hid_t fid) /* get user block size */ if ((fcpl = H5Fget_create_plist(fid)) < 0) { - HGOTO_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Fget_create_plist failed to retrieve file creation property list"); + H5TOOLS_GOTO_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Fget_create_plist failed to retrieve file creation property list"); } if (H5Pget_userblock(fcpl, &ub_size) < 0) { - HGOTO_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Pget_userblock failed to retrieve userblock size"); + H5TOOLS_GOTO_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Pget_userblock failed to retrieve userblock size"); } if (H5Pclose(fcpl) < 0) { - HGOTO_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Pclose failed to close property list"); + H5TOOLS_GOTO_ERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Pclose failed to close property list"); } /* open file */ if ((fh = HDopen(filename, O_RDONLY)) < 0) { - HGOTO_ERROR(H5E_tools_g, H5E_tools_min_id_g, "HDopen failed to open file <%s>", filename); + H5TOOLS_GOTO_ERROR(H5E_tools_g, H5E_tools_min_id_g, "HDopen failed to open file <%s>", filename); } size = ub_size; @@ -1472,7 +1472,7 @@ print_user_block(const char *filename, hid_t fid) HDprintf("\n"); if (nread < 0) { - HGOTO_ERROR(H5E_tools_g, H5E_tools_min_id_g, "nread < 0"); + H5TOOLS_GOTO_ERROR(H5E_tools_g, H5E_tools_min_id_g, "nread < 0"); } /* update size of userblock left to transfer */ diff --git a/tools/src/h5repack/h5repack_filters.c b/tools/src/h5repack/h5repack_filters.c index 7e32def..891de25 100644 --- a/tools/src/h5repack/h5repack_filters.c +++ b/tools/src/h5repack/h5repack_filters.c @@ -36,7 +36,7 @@ static int aux_copy_obj(hid_t dcpl_id, /* dataset creation property list */ const char* name, /* object name from traverse list */ pack_info_t *objout /*OUT*/) /* info about object to filter */ { - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + int ret_value = 0; /*no need to LEAVE() on ERROR: H5TOOLS_ERR_INIT(int, SUCCEED) */ int nfilters; /* number of filters in DCPL */ char f_objname[256]; /* filter objname */ H5D_layout_t layout; @@ -47,24 +47,24 @@ static int aux_copy_obj(hid_t dcpl_id, /* dataset creation property list */ /* get information about input filters */ if ((nfilters = H5Pget_nfilters(dcpl_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_nfilters failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_nfilters failed"); /* copy filter_info_t structure */ for (i = 0; i < nfilters; i++) { if ((objout->filter[i].filtn = H5Pget_filter2(dcpl_id, (unsigned) i, &objout->filter[i].filt_flag, &objout->filter[i].cd_nelmts, objout->filter[i].cd_values, sizeof(f_objname), f_objname, NULL)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_filter2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_filter2 failed"); } objout->nfilters = nfilters; HDstrcpy(objout->path, name); if ((layout = H5Pget_layout(dcpl_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_layout failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_layout failed"); objout->layout = layout; if (layout == H5D_CHUNKED) { if ((rank = H5Pget_chunk(dcpl_id, NELMTS(chsize), chsize/*out*/)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_chunk failed"); objout->chunk.rank = rank; for (u = 0; u < (unsigned)rank; u++) objout->chunk.chunk_lengths[u] = chsize[u]; @@ -238,7 +238,7 @@ int apply_filters(const char* name, /* object name from traverse list */ pack_opt_t *options, /* repack options */ int *has_filter) /* (OUT) object NAME has a filter */ { - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + int ret_value = 0; /*no need to LEAVE() on ERROR: H5TOOLS_ERR_INIT(int, SUCCEED) */ int nfilters; /* number of filters in DCPL */ hsize_t chsize[64]; /* chunk size in elements */ H5D_layout_t layout; @@ -267,7 +267,7 @@ int apply_filters(const char* name, /* object name from traverse list */ /* get information about input filters */ if ((nfilters = H5Pget_nfilters(dcpl_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_nfilters failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_nfilters failed"); /*------------------------------------------------------------------------- @@ -279,12 +279,12 @@ int apply_filters(const char* name, /* object name from traverse list */ if (nfilters && obj.nfilters) { *has_filter = 1; if (H5Premove_filter(dcpl_id, H5Z_FILTER_ALL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Premove_filter failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Premove_filter failed"); } else if(nfilters) { *has_filter = 1; if (aux_copy_obj(dcpl_id, name, &filtobj) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "aux_copy_obj failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "aux_copy_obj failed"); } /*------------------------------------------------------------------------- @@ -294,11 +294,11 @@ int apply_filters(const char* name, /* object name from traverse list */ */ if (obj.layout == -1) { if ((layout = H5Pget_layout(dcpl_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_layout failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_layout failed"); if (layout == H5D_CHUNKED) { if ((rank = H5Pget_chunk(dcpl_id, NELMTS(chsize), chsize/*out*/)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_chunk failed"); obj.layout = H5D_CHUNKED; obj.chunk.rank = rank; for (i = 0; i < rank; i++) @@ -340,7 +340,7 @@ int apply_filters(const char* name, /* object name from traverse list */ for (i = rank; i > 0; --i) { hsize_t size = 0; if(sm_nbytes == 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "number of bytes per stripmine must be > 0"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "number of bytes per stripmine must be > 0"); size = H5TOOLS_BUFSIZE / sm_nbytes; if (size == 0) /* datum size > H5TOOLS_BUFSIZE */ size = 1; @@ -355,7 +355,7 @@ int apply_filters(const char* name, /* object name from traverse list */ for (i = 0; i < obj.nfilters; i++) { if (obj.filter[i].filtn < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid filter"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid filter"); switch (obj.filter[i].filtn) { /*------------------------------------------------------------------------- @@ -376,9 +376,9 @@ int apply_filters(const char* name, /* object name from traverse list */ aggression = obj.filter[i].cd_values[0]; /* set up for deflated data */ if (H5Pset_chunk(dcpl_id, obj.chunk.rank, obj.chunk.chunk_lengths) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); if (H5Pset_deflate(dcpl_id, aggression) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_deflate failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_deflate failed"); } break; @@ -396,9 +396,9 @@ int apply_filters(const char* name, /* object name from traverse list */ /* set up for szip data */ if (H5Pset_chunk(dcpl_id, obj.chunk.rank, obj.chunk.chunk_lengths) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); if (H5Pset_szip(dcpl_id, options_mask, pixels_per_block) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_szip failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_szip failed"); } break; @@ -408,9 +408,9 @@ int apply_filters(const char* name, /* object name from traverse list */ */ case H5Z_FILTER_SHUFFLE: if (H5Pset_chunk(dcpl_id, obj.chunk.rank, obj.chunk.chunk_lengths) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); if (H5Pset_shuffle(dcpl_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_shuffle failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_shuffle failed"); break; /*------------------------------------------------------------------------- @@ -419,9 +419,9 @@ int apply_filters(const char* name, /* object name from traverse list */ */ case H5Z_FILTER_FLETCHER32: if (H5Pset_chunk(dcpl_id, obj.chunk.rank, obj.chunk.chunk_lengths) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); if (H5Pset_fletcher32(dcpl_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fletcher32 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_fletcher32 failed"); break; /*----------- ------------------------------------------------------------- * H5Z_FILTER_NBIT , NBIT compression @@ -429,9 +429,9 @@ int apply_filters(const char* name, /* object name from traverse list */ */ case H5Z_FILTER_NBIT: if (H5Pset_chunk(dcpl_id, obj.chunk.rank, obj.chunk.chunk_lengths) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); if (H5Pset_nbit(dcpl_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_nbit failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_nbit failed"); break; /*----------- ------------------------------------------------------------- * H5Z_FILTER_SCALEOFFSET , scale+offset compression @@ -446,19 +446,19 @@ int apply_filters(const char* name, /* object name from traverse list */ scale_factor = (int) obj.filter[i].cd_values[1]; if (H5Pset_chunk(dcpl_id, obj.chunk.rank, obj.chunk.chunk_lengths) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); if (H5Pset_scaleoffset(dcpl_id, scale_type, scale_factor) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_scaleoffset failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_scaleoffset failed"); } break; default: { if (H5Pset_chunk(dcpl_id, obj.chunk.rank, obj.chunk.chunk_lengths) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); if (H5Pset_filter(dcpl_id, obj.filter[i].filtn, obj.filter[i].filt_flag, obj.filter[i].cd_nelmts, obj.filter[i].cd_values) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_filter failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_filter failed"); } break; } /* switch */ @@ -469,10 +469,10 @@ int apply_filters(const char* name, /* object name from traverse list */ if (filtobj.nfilters) { for (i = 0; i < filtobj.nfilters; i++) { if (filtobj.filter[i].filtn < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid filter"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid filter"); if (H5Zfilter_avail(filtobj.filter[i].filtn) <= 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "%d filter unavailable", filtobj.filter[i].filtn); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "%d filter unavailable", filtobj.filter[i].filtn); } /* for */ } /* nfilters */ @@ -484,20 +484,20 @@ int apply_filters(const char* name, /* object name from traverse list */ if (obj.layout >= 0) { /* a layout was defined */ if (H5Pset_layout(dcpl_id, obj.layout) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_layout failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_layout failed"); if (H5D_CHUNKED == obj.layout) { if (H5Pset_chunk(dcpl_id, obj.chunk.rank, obj.chunk.chunk_lengths) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_chunk failed"); } else if (H5D_COMPACT == obj.layout) { if (H5Pset_alloc_time(dcpl_id, H5D_ALLOC_TIME_EARLY) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_alloc_time failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_alloc_time failed"); } /* remove filters for the H5D_CONTIGUOUS case */ else if (H5D_CONTIGUOUS == obj.layout) { if (H5Premove_filter(dcpl_id, H5Z_FILTER_ALL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Premove_filter failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Premove_filter failed"); } } diff --git a/tools/src/h5repack/h5repack_opttable.c b/tools/src/h5repack/h5repack_opttable.c index 7ab8c6e..9d35c4f 100644 --- a/tools/src/h5repack/h5repack_opttable.c +++ b/tools/src/h5repack/h5repack_opttable.c @@ -111,7 +111,7 @@ aux_inctable(pack_opttbl_t *table, unsigned n_objs) return 0; } - + /*------------------------------------------------------------------------- * Function: options_table_init * @@ -144,7 +144,7 @@ int options_table_init(pack_opttbl_t **tbl) { return 0; } - + /*------------------------------------------------------------------------- * Function: options_table_free * @@ -190,7 +190,7 @@ options_add_layout(obj_list_t *obj_list, unsigned n_objs, pack_info_t *pack, pa if (HDstrcmp(obj_list[j].obj,table->objs[i].path) == 0) { /* already chunk info inserted for this one; exit */ if (table->objs[i].chunk.rank > 0) { - H5TOOLS_INFO(H5E_tools_min_id_g, "chunk information already inserted for <%s>\n", obj_list[j].obj); + H5TOOLS_INFO(H5E_tools_min_info_id_g, "chunk information already inserted for <%s>\n", obj_list[j].obj); HDexit(EXIT_FAILURE); } /* insert the layout info */ diff --git a/tools/src/h5repack/h5repack_refs.c b/tools/src/h5repack/h5repack_refs.c index bfc376f..52917fb 100644 --- a/tools/src/h5repack/h5repack_refs.c +++ b/tools/src/h5repack/h5repack_refs.c @@ -22,7 +22,7 @@ */ static const char* MapIdToName(hid_t refobj_id,trav_table_t *travt); -static int copy_refs_attr(hid_t loc_in, hid_t loc_out, +static int copy_refs_attr(hid_t loc_in, hid_t loc_out, trav_table_t *travt, hid_t fidout); static herr_t update_ref_value(hid_t obj_id, H5R_type_t ref_type, void *ref_in, hid_t fid_out, void *ref_out, trav_table_t *travt); @@ -42,7 +42,7 @@ int do_copy_refobjs(hid_t fidin, trav_table_t *travt, pack_opt_t *options) /* repack options */ { - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + int ret_value = 0; /*no need to LEAVE() on ERROR: H5TOOLS_ERR_INIT(int, SUCCEED) */ hid_t grp_in = -1; /* read group ID */ hid_t grp_out = -1; /* write group ID */ hid_t dset_in = -1; /* read dataset ID */ @@ -76,18 +76,18 @@ int do_copy_refobjs(hid_t fidin, *------------------------------------------------------------------------- */ if((grp_out = H5Gopen2(fidout, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed"); if((grp_in = H5Gopen2(fidin, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed"); if(copy_refs_attr(grp_in, grp_out, travt, fidout) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_refs_attr failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_refs_attr failed"); if(H5Gclose(grp_out) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); if(H5Gclose(grp_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); /*------------------------------------------------------------------------- * check for hard links @@ -104,26 +104,26 @@ int do_copy_refobjs(hid_t fidin, */ case H5TRAV_TYPE_DATASET: if((dset_in = H5Dopen2(fidin, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); if((space_id = H5Dget_space(dset_in)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); if((ftype_id = H5Dget_type(dset_in)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); if((dcpl_id = H5Dget_create_plist(dset_in)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); if((rank = H5Sget_simple_extent_ndims(space_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); if(H5Sget_simple_extent_dims(space_id, dims, NULL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); nelmts = 1; for(k = 0; k < rank; k++) nelmts *= dims[k]; if((mtype_id = H5Tget_native_type(ftype_id, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type failed"); if((msize = H5Tget_size(mtype_id)) == 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); /*------------------------------------------------------------------------- * check if the dataset creation property list has filters that @@ -159,15 +159,15 @@ int do_copy_refobjs(hid_t fidin, buf = (hobj_ref_t *)HDmalloc((unsigned)(nelmts * msize)); if(buf==NULL) { HDprintf("cannot read into memory\n" ); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); } /* end if */ if(H5Dread(dset_in, mtype_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); refbuf = (hobj_ref_t*) HDcalloc((unsigned)nelmts, msize); if(refbuf == NULL){ HDprintf("cannot allocate memory\n" ); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDcalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDcalloc failed"); } /* end if */ for(u = 0; u < nelmts; u++) { H5E_BEGIN_TRY { @@ -181,7 +181,7 @@ int do_copy_refobjs(hid_t fidin, if((refname = MapIdToName(refobj_id, travt)) != NULL) { /* create the reference, -1 parameter for objects */ if(H5Rcreate(&refbuf[u], fidout, refname, H5R_OBJECT, (hid_t)-1) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rcreate failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rcreate failed"); if(options->verbose) { HDprintf(FORMAT_OBJ,"dset",travt->objs[i].name ); HDprintf("object <%s> object reference created to <%s>\n", @@ -199,10 +199,10 @@ int do_copy_refobjs(hid_t fidin, *------------------------------------------------------------------------- */ if((dset_out = H5Dcreate2(fidout, travt->objs[i].name, mtype_id, space_id, H5P_DEFAULT, dcpl_id, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dcreate2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dcreate2 failed"); if(nelmts) if(H5Dwrite(dset_out, mtype_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, refbuf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dwrite failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dwrite failed"); if(buf) HDfree(buf); @@ -213,7 +213,7 @@ int do_copy_refobjs(hid_t fidin, * copy attrs *----------------------------------------------------*/ if(copy_attr(dset_in, dset_out, &named_dt_head, travt, options) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); } /*H5T_STD_REF_OBJ*/ /*------------------------------------------------------------------------- @@ -235,10 +235,10 @@ int do_copy_refobjs(hid_t fidin, buf = (hdset_reg_ref_t *)HDmalloc((unsigned)(nelmts * msize)); if(buf == NULL) { HDprintf("cannot read into memory\n"); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); } /* end if */ if(H5Dread(dset_in, mtype_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); /*------------------------------------------------------------------------- * create output @@ -247,7 +247,7 @@ int do_copy_refobjs(hid_t fidin, refbuf = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)nelmts); /*init to zero */ if(refbuf == NULL) { HDprintf("cannot allocate memory\n"); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDcalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDcalloc failed"); } /* end if */ for(u = 0; u < nelmts; u++) { @@ -263,13 +263,13 @@ int do_copy_refobjs(hid_t fidin, hid_t region_id = -1; /* region id of the referenced dataset */ if((region_id = H5Rget_region(dset_in, H5R_DATASET_REGION, &buf[u])) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rget_region failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rget_region failed"); /* create the reference, we need the space_id */ if(H5Rcreate(&refbuf[u], fidout, refname, H5R_DATASET_REGION, region_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rcreate failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rcreate failed"); if(H5Sclose(region_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); if(options->verbose) { HDprintf(FORMAT_OBJ,"dset",travt->objs[i].name ); HDprintf("object <%s> region reference created to <%s>\n", @@ -287,10 +287,10 @@ int do_copy_refobjs(hid_t fidin, *------------------------------------------------------------------------- */ if((dset_out = H5Dcreate2(fidout, travt->objs[i].name, mtype_id, space_id, H5P_DEFAULT, dcpl_id, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dcreate2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dcreate2 failed"); if(nelmts) if(H5Dwrite(dset_out, mtype_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, refbuf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dwrite failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dwrite failed"); if(buf) HDfree(buf); @@ -301,7 +301,7 @@ int do_copy_refobjs(hid_t fidin, * copy attrs *----------------------------------------------------*/ if(copy_attr(dset_in, dset_out, &named_dt_head, travt, options) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); } /* H5T_STD_REF_DSETREG */ /*------------------------------------------------------------------------- * not references, open previously created object in 1st traversal @@ -309,7 +309,7 @@ int do_copy_refobjs(hid_t fidin, */ else { if((dset_out = H5Dopen2(fidout, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); } /* end else */ /*------------------------------------------------------------------------- @@ -317,7 +317,7 @@ int do_copy_refobjs(hid_t fidin, *------------------------------------------------------------------------- */ if(copy_refs_attr(dset_in, dset_out, travt, fidout) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_refs_attr failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_refs_attr failed"); /*------------------------------------------------------------------------- * check for hard links @@ -328,7 +328,7 @@ int do_copy_refobjs(hid_t fidin, H5Lcreate_hard(fidout, travt->objs[i].name, H5L_SAME_LOC, travt->objs[i].links[j].new_name, H5P_DEFAULT, H5P_DEFAULT); if(H5Dclose(dset_out) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); } /*can_read*/ /*------------------------------------------------------------------------- @@ -336,15 +336,15 @@ int do_copy_refobjs(hid_t fidin, *------------------------------------------------------------------------- */ if(H5Tclose(ftype_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); if(H5Tclose(mtype_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); if(H5Pclose(dcpl_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if(H5Sclose(space_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); if(H5Dclose(dset_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); break; /*------------------------------------------------------------------------- @@ -353,9 +353,9 @@ int do_copy_refobjs(hid_t fidin, */ case H5TRAV_TYPE_NAMED_DATATYPE: if((type_in = H5Topen2(fidin, travt->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Topen2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Topen2 failed"); if(H5Tclose(type_in) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); break; /*------------------------------------------------------------------------- @@ -368,7 +368,7 @@ int do_copy_refobjs(hid_t fidin, case H5TRAV_TYPE_UNKNOWN: case H5TRAV_TYPE_UDLINK: - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5TRAV invalid type"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5TRAV invalid type"); default: break; @@ -429,7 +429,7 @@ static int copy_refs_attr(hid_t loc_in, trav_table_t *travt, hid_t fidout) /* for saving references */ { - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + int ret_value = 0; /*no need to LEAVE() on ERROR: H5TOOLS_ERR_INIT(int, SUCCEED) */ hid_t attr_id = -1; /* attr ID */ hid_t attr_out = -1; /* attr ID */ hid_t space_id = -1; /* space ID */ @@ -455,26 +455,26 @@ static int copy_refs_attr(hid_t loc_in, if(H5Oget_info2(loc_in, &oinfo, H5O_INFO_NUM_ATTRS) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info failed"); for(u = 0; u < (unsigned)oinfo.num_attrs; u++) { is_ref = is_ref_vlen = is_ref_array = is_ref_comp = 0; /* open attribute */ if((attr_id = H5Aopen_by_idx(loc_in, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, H5P_DEFAULT, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx failed"); /* get the file datatype */ if((ftype_id = H5Aget_type(attr_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_type failed"); type_class = H5Tget_class(ftype_id); if((mtype_id = H5Tget_native_type(ftype_id, H5T_DIR_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type failed"); if((msize = H5Tget_size(mtype_id)) == 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); is_ref = (type_class == H5T_REFERENCE); @@ -498,7 +498,7 @@ static int copy_refs_attr(hid_t loc_in, int nmembers = H5Tget_nmembers(ftype_id) ; if (nmembers < 1) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed"); ref_comp_index = (unsigned *)HDmalloc((size_t)nmembers*sizeof(unsigned)); ref_comp_size = (size_t *)HDmalloc((size_t)nmembers*sizeof(ref_comp_size)); @@ -546,15 +546,15 @@ static int copy_refs_attr(hid_t loc_in, /* get name */ if(H5Aget_name(attr_id, 255, name) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_name failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_name failed"); /* get the dataspace handle */ if((space_id = H5Aget_space(attr_id)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_space failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_space failed"); /* get dimensions */ if((rank = H5Sget_simple_extent_dims(space_id, dims, NULL)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); /*------------------------------------------------------------------------- @@ -583,7 +583,7 @@ static int copy_refs_attr(hid_t loc_in, } if((attr_out = H5Acreate2(loc_out, name, ftype_id, space_id, H5P_DEFAULT, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Acreate2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Acreate2 failed"); if (nelmts>0) { /* handle object references */ @@ -591,15 +591,15 @@ static int copy_refs_attr(hid_t loc_in, buf = (hobj_ref_t *)HDmalloc((unsigned)(nelmts * msize)); if(buf == NULL) { HDprintf("cannot read into memory\n"); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); } /* end if */ if(H5Aread(attr_id, mtype_id, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); refbuf = (hobj_ref_t *)HDcalloc((unsigned)nelmts, msize); if(refbuf == NULL) { HDprintf("cannot allocate memory\n"); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDcalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDcalloc failed"); } /* end if */ for(i = 0; i < (unsigned)nelmts; i++) @@ -612,10 +612,10 @@ static int copy_refs_attr(hid_t loc_in, if(buf == NULL) { HDprintf( "cannot read into memory\n" ); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); } /* end if */ if(H5Aread(attr_id, mtype_id, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); /*------------------------------------------------------------------------- * create output @@ -624,7 +624,7 @@ static int copy_refs_attr(hid_t loc_in, refbuf = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)nelmts); /*init to zero */ if(refbuf == NULL) { HDprintf( "cannot allocate memory\n" ); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDcalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDcalloc failed"); } /* end if */ for(i = 0; i < (unsigned)nelmts; i++) @@ -639,11 +639,11 @@ static int copy_refs_attr(hid_t loc_in, if(buf == NULL) { HDprintf( "cannot read into memory\n" ); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); } /* end if */ if(H5Aread(attr_id, mtype_id, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); if (H5R_OBJ_REF_BUF_SIZE==msize) { hobj_ref_t ref_out; @@ -680,11 +680,11 @@ static int copy_refs_attr(hid_t loc_in, if(buf == NULL) { HDprintf( "cannot read into memory\n" ); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "HDmalloc failed"); } /* end if */ if(H5Aread(attr_id, mtype_id, buf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); for (i=0; i<(unsigned)nelmts; i++) { for (j=0; j<(unsigned)ref_comp_field_n; j++) { @@ -709,7 +709,7 @@ static int copy_refs_attr(hid_t loc_in, } /* else if (is_ref_comp) */ if(H5Awrite(attr_out, mtype_id, refbuf) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Awrite failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Awrite failed"); if (is_ref_vlen && buf) H5Treclaim (mtype_id, space_id, H5P_DEFAULT, buf); @@ -739,20 +739,20 @@ static int copy_refs_attr(hid_t loc_in, } if(H5Aclose(attr_out) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aclose failed"); /*------------------------------------------------------------------------- * close *------------------------------------------------------------------------- */ if(H5Tclose(ftype_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); if(H5Tclose(mtype_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); if(H5Sclose(space_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); if(H5Aclose(attr_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aclose failed"); } /* for(u = 0; u < (unsigned)oinfo.num_attrs; u++) */ done: @@ -822,27 +822,27 @@ out: static herr_t update_ref_value(hid_t obj_id, H5R_type_t ref_type, void *ref_in, hid_t fid_out, void *ref_out, trav_table_t *travt) { - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + int ret_value = 0; /*no need to LEAVE() on ERROR: H5TOOLS_ERR_INIT(int, SUCCEED) */ const char *ref_obj_name; hid_t space_id = -1; hid_t ref_obj_id = -1; ref_obj_id = H5Rdereference2(obj_id, H5P_DEFAULT, ref_type, ref_in); if (ref_obj_id < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rdereference2 failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rdereference2 failed"); ref_obj_name = MapIdToName(ref_obj_id, travt); if (ref_obj_name == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "MapIdToName failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "MapIdToName failed"); if (ref_type == H5R_DATASET_REGION) { space_id = H5Rget_region(obj_id, H5R_DATASET_REGION, ref_in); if (space_id < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rget_region failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rget_region failed"); } if(H5Rcreate(ref_out, fid_out, ref_obj_name, ref_type, space_id) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rcreate failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Rcreate failed"); done: H5E_BEGIN_TRY { diff --git a/tools/src/h5repack/h5repack_verify.c b/tools/src/h5repack/h5repack_verify.c index dbe8e1a..30bd3f6 100644 --- a/tools/src/h5repack/h5repack_verify.c +++ b/tools/src/h5repack/h5repack_verify.c @@ -39,7 +39,7 @@ static int verify_filters(hid_t pid, hid_t tid, int nfilters, filter_info_t *fil int h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options) { - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + int ret_value = 0; /*no need to LEAVE() on ERROR: H5TOOLS_ERR_INIT(int, SUCCEED) */ hid_t fidin = -1; /* file ID for input file*/ hid_t fidout = -1; /* file ID for output file*/ hid_t did = -1; /* dataset ID */ @@ -58,7 +58,7 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options /* open the output file */ if((fidout = H5Fopen(out_fname, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0 ) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fopen failed on <%s>", out_fname); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fopen failed on <%s>", out_fname); for(i = 0; i < options->op_tbl->nelems; i++) { char *name = options->op_tbl->objs[i].path; @@ -69,13 +69,13 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options *------------------------------------------------------------------------- */ if((did = H5Dopen2(fidout, name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed on <%s>", name); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed on <%s>", name); if((sid = H5Dget_space(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); if((pid = H5Dget_create_plist(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); if((tid = H5Dget_type(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); /*------------------------------------------------------------------------- * filter check @@ -96,13 +96,13 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options *------------------------------------------------------------------------- */ if(H5Pclose(pid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if (H5Sclose(sid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); if (H5Dclose(did) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); if (H5Tclose(tid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); } /*------------------------------------------------------------------------- @@ -118,7 +118,7 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options /* get the list of objects in the file */ if(h5trav_gettable(fidout, travt) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5trav_gettable failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5trav_gettable failed"); for(i = 0; i < travt->nobjs; i++) { char *name = travt->objs[i].name; @@ -129,13 +129,13 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options *------------------------------------------------------------------------- */ if((did = H5Dopen2(fidout, name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed on <%s>", name); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed on <%s>", name); if((sid = H5Dget_space(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); if((pid = H5Dget_create_plist(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); if((tid = H5Dget_type(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); /*------------------------------------------------------------------------- * filter check @@ -165,13 +165,13 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options *------------------------------------------------------------------------- */ if (H5Pclose(pid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if (H5Sclose(sid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); if (H5Dclose(did) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); if (H5Tclose(tid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose failed"); } /* if */ } /* i */ @@ -187,32 +187,32 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options /* open the input file */ if((fidin = H5Fopen(in_fname, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fopen failed on file <%s>", in_fname); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fopen failed on file <%s>", in_fname); /* Get file creation property list for input file */ if((fcpl_in = H5Fget_create_plist(fidin)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fget_create_plist failed to retrieve file creation property list"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fget_create_plist failed to retrieve file creation property list"); /* Get file space info for input file */ if(H5Pget_file_space_strategy(fcpl_in, &in_strategy, &in_persist, &in_threshold) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_strategy failed to retrieve file space strategy & threshold"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_strategy failed to retrieve file space strategy & threshold"); /* Get file space page size for input file */ if(H5Pget_file_space_page_size(fcpl_in, &in_pagesize) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_page_size failed to retrieve file space page size"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_page_size failed to retrieve file space page size"); /* Output file is already opened */ /* Get file creation property list for output file */ if((fcpl_out = H5Fget_create_plist(fidout)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fget_create_plist failed to retrieve file creation property list"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fget_create_plist failed to retrieve file creation property list"); /* Get file space info for output file */ if(H5Pget_file_space_strategy(fcpl_out, &out_strategy, &out_persist, &out_threshold) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_strategy failed to retrieve file space strategy & threshold"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_strategy failed to retrieve file space strategy & threshold"); /* Get file space page size for output file */ if(H5Pget_file_space_page_size(fcpl_out, &out_pagesize) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_page_size failed to retrieve file space page size"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_file_space_page_size failed to retrieve file space page size"); /* * If -S option is set, the file space handling strategy should be set as specified. @@ -221,11 +221,11 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options */ if(options->fs_strategy) { if(out_strategy != (options->fs_strategy == (H5F_fspace_strategy_t)-1 ? 0 : options->fs_strategy)) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "file space strategy not set as unexpected"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "file space strategy not set as unexpected"); } else { if(out_strategy != in_strategy) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "file space strategy not set as unexpected"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "file space strategy not set as unexpected"); } /* @@ -235,11 +235,11 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options */ if(options->fs_persist) { if(out_persist != (hbool_t)(options->fs_persist == (-1) ? FALSE : options->fs_persist)) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "free-space persist status not set as unexpected"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "free-space persist status not set as unexpected"); } else { if(out_persist != in_persist) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "free-space persist status not set as unexpected"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "free-space persist status not set as unexpected"); } /* @@ -249,11 +249,11 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options */ if(options->fs_threshold) { if(out_threshold != (hsize_t)(options->fs_threshold == (-1) ? 0 : options->fs_threshold)) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "threshold not set as unexpected"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "threshold not set as unexpected"); } else { if(out_threshold != in_threshold) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "threshold not set as unexpected"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "threshold not set as unexpected"); } /* @@ -263,11 +263,11 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options */ if(options->fs_pagesize) { if(out_pagesize != (hsize_t)(options->fs_pagesize == (-1) ? 0 : options->fs_pagesize)) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "file space page size not set as unexpected"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "file space page size not set as unexpected"); } else { /* "-G" is not set */ if(out_pagesize != in_pagesize) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "file space page size not set as unexpected"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "file space page size not set as unexpected"); } @@ -355,7 +355,7 @@ int verify_layout(hid_t pid, pack_info_t *obj) int h5repack_cmp_pl(const char *fname1, const char *fname2) { - int ret_value = 1; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ + int ret_value = 1; /*no need to LEAVE() on ERROR: H5TOOLS_ERR_INIT(int, SUCCEED) */ hid_t fid1 =-1; /* file ID */ hid_t fid2 =-1; /* file ID */ hid_t dset1 =-1; /* dataset ID */ @@ -375,9 +375,9 @@ int h5repack_cmp_pl(const char *fname1, const char *fname2) */ /* Open the files */ if ((fid1 = H5Fopen(fname1, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5tools_fopen failed <%s>: %s", fname1, H5FOPENERROR); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5tools_fopen failed <%s>: %s", fname1, H5FOPENERROR); if ((fid2 = H5Fopen(fname2, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5tools_fopen failed <%s>: %s", fname2, H5FOPENERROR); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5tools_fopen failed <%s>: %s", fname2, H5FOPENERROR); /*------------------------------------------------------------------------- * get file table list of objects @@ -388,7 +388,7 @@ int h5repack_cmp_pl(const char *fname1, const char *fname2) /* init table */ trav_table_init(&trav); if(h5trav_gettable(fid1, trav) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5trav_gettable failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5trav_gettable failed"); /*------------------------------------------------------------------------- * traverse the suppplied object list @@ -397,62 +397,62 @@ int h5repack_cmp_pl(const char *fname1, const char *fname2) for(i = 0; i < trav->nobjs; i++) { if(trav->objs[i].type == H5TRAV_TYPE_GROUP) { if ((gid = H5Gopen2(fid1, trav->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed on first <%s>", trav->objs[i].name); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed on first <%s>", trav->objs[i].name); if ((gcplid = H5Gget_create_plist(gid)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gget_create_plist failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gget_create_plist failed"); if (H5Pget_link_creation_order(gcplid, &crt_order_flag1) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_link_creation_order failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_link_creation_order failed"); if (H5Pclose(gcplid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if (H5Gclose(gid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); if ((gid = H5Gopen2(fid2, trav->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed on second <%s>", trav->objs[i].name); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gopen2 failed on second <%s>", trav->objs[i].name); if ((gcplid = H5Gget_create_plist(gid)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gget_create_plist failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gget_create_plist failed"); if (H5Pget_link_creation_order(gcplid, &crt_order_flag2) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_link_creation_order failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_link_creation_order failed"); if (H5Pclose(gcplid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if (H5Gclose(gid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gclose failed"); if (crt_order_flag1 != crt_order_flag2) - HGOTO_ERROR(0, H5E_tools_min_id_g, "property lists failed for <%s> are different", trav->objs[i].name); + H5TOOLS_GOTO_ERROR(0, H5E_tools_min_id_g, "property lists failed for <%s> are different", trav->objs[i].name); } else if(trav->objs[i].type == H5TRAV_TYPE_DATASET) { if((dset1 = H5Dopen2(fid1, trav->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed on first <%s>", trav->objs[i].name); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed on first <%s>", trav->objs[i].name); if((dset2 = H5Dopen2(fid2, trav->objs[i].name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed on second <%s>", trav->objs[i].name); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed on second <%s>", trav->objs[i].name); if((dcpl1 = H5Dget_create_plist(dset1)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); if((dcpl2 = H5Dget_create_plist(dset2)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); /*------------------------------------------------------------------------- * compare the property lists *------------------------------------------------------------------------- */ if((ret_value = H5Pequal(dcpl1, dcpl2)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pequal failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pequal failed"); if(ret_value == 0) - HGOTO_ERROR(0, H5E_tools_min_id_g, "property lists failed for <%s> are different", trav->objs[i].name); + H5TOOLS_GOTO_ERROR(0, H5E_tools_min_id_g, "property lists failed for <%s> are different", trav->objs[i].name); /*------------------------------------------------------------------------- * close *------------------------------------------------------------------------- */ if(H5Pclose(dcpl1) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if(H5Pclose(dcpl2) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); if(H5Dclose(dset1) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); if(H5Dclose(dset2) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); } /*if*/ } /*for*/ diff --git a/tools/src/h5stat/h5stat.c b/tools/src/h5stat/h5stat.c index 3eea368..6ff1e8c 100644 --- a/tools/src/h5stat/h5stat.c +++ b/tools/src/h5stat/h5stat.c @@ -455,7 +455,7 @@ group_stats(iter_t *iter, const char *name, const H5O_info_t *oi) /* Get group information */ if((ret_value = H5Gget_info_by_name(iter->fid, name, &ginfo, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gget_info_by_name() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Gget_info_by_name() failed"); /* Update link stats */ /* Collect statistics for small groups */ @@ -470,7 +470,7 @@ group_stats(iter_t *iter, const char *name, const H5O_info_t *oi) if((bin + 1) > iter->group_nbins) { /* Allocate more storage for info about dataset's datatype */ if((iter->group_bins = (unsigned long *)HDrealloc(iter->group_bins, (bin + 1) * sizeof(unsigned long))) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Drealloc() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Drealloc() failed"); /* Initialize counts for intermediate bins */ while(iter->group_nbins < bin) @@ -489,7 +489,7 @@ group_stats(iter_t *iter, const char *name, const H5O_info_t *oi) /* Update attribute metadata info */ if((ret_value = attribute_stats(iter, oi)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "attribute_stats failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "attribute_stats failed"); done: return ret_value; @@ -537,7 +537,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) iter->dset_ohdr_info.free_size += oi->hdr.space.free; if((did = H5Dopen2(iter->fid, name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen() failed"); /* Update dataset metadata info */ iter->datasets_index_storage_size += oi->meta_size.obj.index_size; @@ -545,7 +545,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) /* Update attribute metadata info */ if((ret_value = attribute_stats(iter, oi)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "attribute_stats() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "attribute_stats() failed"); /* Get storage info */ /* Failure 0 indistinguishable from no-data-stored 0 */ @@ -553,10 +553,10 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) /* Gather layout statistics */ if((dcpl = H5Dget_create_plist(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist() failed"); if((lout = H5Pget_layout(dcpl)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_layout() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_layout() failed"); /* Object header's total size for H5D_COMPACT layout includes raw data size */ /* "storage" also includes H5D_COMPACT raw data size */ @@ -568,7 +568,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) /* Get the number of external files for the dataset */ if((num_ext = H5Pget_external_count(dcpl)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_external_count() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pget_external_count() failed"); /* Accumulate raw data size accordingly */ if(num_ext) { @@ -580,10 +580,10 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) /* Gather dataspace statistics */ if((sid = H5Dget_space(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_space() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_space() failed"); if((ndims = H5Sget_simple_extent_dims(sid, dims, NULL)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims() failed"); /* Check for larger rank of dataset */ if((unsigned)ndims > iter->max_dset_rank) @@ -606,7 +606,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) if((bin + 1) > iter->dset_dim_nbins) { /* Allocate more storage for info about dataset's datatype */ if((iter->dset_dim_bins = (unsigned long *)HDrealloc(iter->dset_dim_bins, (bin + 1) * sizeof(unsigned long))) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Drealloc() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Drealloc() failed"); /* Initialize counts for intermediate bins */ while(iter->dset_dim_nbins < bin) @@ -621,11 +621,11 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) } /* end if */ if(H5Sclose(sid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose() failed"); /* Gather datatype statistics */ if((tid = H5Dget_type(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type() failed"); type_found = FALSE; for(u = 0; u < iter->dset_ntypes; u++) @@ -644,11 +644,11 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) /* Allocate more storage for info about dataset's datatype */ if((iter->dset_type_info = (dtype_info_t *)HDrealloc(iter->dset_type_info, iter->dset_ntypes * sizeof(dtype_info_t))) == NULL) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Drealloc() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Drealloc() failed"); /* Initialize information about datatype */ if((iter->dset_type_info[curr_ntype].tid = H5Tcopy(tid)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tcopy() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tcopy() failed"); iter->dset_type_info[curr_ntype].count = 1; iter->dset_type_info[curr_ntype].named = 0; @@ -661,7 +661,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) (iter->dset_type_info[u].named)++; if(H5Tclose(tid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tclose() failed"); /* Track different filters */ if((nfltr = H5Pget_nfilters(dcpl)) >= 0) { @@ -679,10 +679,10 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) } /* endif nfltr */ if(H5Pclose(dcpl) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose() failed"); if(H5Dclose(did) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose() failed"); done: return ret_value; @@ -715,7 +715,7 @@ datatype_stats(iter_t *iter, const H5O_info_t *oi) /* Update attribute metadata info */ if((ret_value = attribute_stats(iter, oi)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "attribute_stats() failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "attribute_stats() failed"); done: return ret_value; } /* end datatype_stats() */ @@ -750,17 +750,17 @@ obj_stats(const char *path, const H5O_info_t *oi, const char *already_visited, switch(oi->type) { case H5O_TYPE_GROUP: if(group_stats(iter, path, oi) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "group_stats failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "group_stats failed"); break; case H5O_TYPE_DATASET: if(dataset_stats(iter, path, oi) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "dataset_stats failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "dataset_stats failed"); break; case H5O_TYPE_NAMED_DATATYPE: if(datatype_stats(iter, oi) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "datatype_stats failed"); + H5TOOLS_GOTO_ERROR(FAIL, H5E_tools_min_id_g, "datatype_stats failed"); break; case H5O_TYPE_MAP: diff --git a/tools/testfiles/tall-2.ls b/tools/testfiles/tall-2.ls index 2d3d66b..eb6c3de 100644 --- a/tools/testfiles/tall-2.ls +++ b/tools/testfiles/tall-2.ls @@ -3,15 +3,14 @@ /g1/g1.1 Group /g1/g1.1/dset1.1.1 Dataset {10, 10} Data: - (0,0) 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 2, - (2,2) 4, 6, 8, 10, 12, 14, 16, 18, 0, 3, 6, 9, 12, 15, 18, 21, 24, 27, - (4,0) 0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 0, 5, 10, 15, 20, 25, 30, 35, - (5,8) 40, 45, 0, 6, 12, 18, 24, 30, 36, 42, 48, 54, 0, 7, 14, 21, 28, - (7,5) 35, 42, 49, 56, 63, 0, 8, 16, 24, 32, 40, 48, 56, 64, 72, 0, 9, - (9,2) 18, 27, 36, 45, 54, 63, 72, 81 + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 2, 4, 6, + 8, 10, 12, 14, 16, 18, 0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 0, 4, 8, 12, + 16, 20, 24, 28, 32, 36, 0, 5, 10, 15, 20, 25, 30, 35, 40, 45, 0, 6, 12, + 18, 24, 30, 36, 42, 48, 54, 0, 7, 14, 21, 28, 35, 42, 49, 56, 63, 0, 8, + 16, 24, 32, 40, 48, 56, 64, 72, 0, 9, 18, 27, 36, 45, 54, 63, 72, 81 /g1/g1.1/dset1.1.2 Dataset {20} Data: - (0) 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 + 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 /g1/g1.2 Group /g1/g1.2/extlink External Link {somefile//somepath} /g1/g1.2/g1.2.1 Group @@ -19,9 +18,8 @@ /g2 Group /g2/dset2.1 Dataset {10} Data: - (0) 1, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9 + 1, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9 /g2/dset2.2 Dataset {3, 5} Data: - (0,0) 0, 0.1, 0.2, 0.3, 0.4, 0, 0.2, 0.4, 0.6, 0.8, 0, 0.3, 0.6, 0.9, - (2,4) 1.2 + 0, 0.1, 0.2, 0.3, 0.4, 0, 0.2, 0.4, 0.6, 0.8, 0, 0.3, 0.6, 0.9, 1.2 /g2/udlink UD Link {cannot follow UD links} diff --git a/tools/testfiles/tarray1.ls b/tools/testfiles/tarray1.ls index 973a4e2..e7cb9e1 100644 --- a/tools/testfiles/tarray1.ls +++ b/tools/testfiles/tarray1.ls @@ -1,4 +1,4 @@ / Group /Dataset1 Dataset {4} Data: - (0) [0,1,2,3], [10,11,12,13], [20,21,22,23], [30,31,32,33] + [0,1,2,3], [10,11,12,13], [20,21,22,23], [30,31,32,33] diff --git a/tools/testfiles/tattrreg_be.ls b/tools/testfiles/tattrreg_be.ls index 8307f35..3962c93 100644 --- a/tools/testfiles/tattrreg_be.ls +++ b/tools/testfiles/tattrreg_be.ls @@ -2,9 +2,12 @@ Opened "tattrreg.h5" with sec2 driver. Dataset1 Dataset {NULL} Attribute: Attribute1 {4} Type: dataset region reference - Data: DSET-/Dataset2 {Blk0: (2,2)-(7,7)}, DSET-/Dataset2 {Pt0: (6,9), - Pt1: (2,2), Pt2: (8,4), Pt3: (1,6), Pt4: (2,8), Pt5: (3,2), - Pt6: (0,4), Pt7: (9,0), Pt8: (7,1), Pt9: (3,3)}, NULL, NULL + Data: DSET-/Dataset2 {Blk0: (2,2)-(7,7)} + DSET-/Dataset2 {Pt0: (6,9), Pt1: (2,2), Pt2: (8,4), Pt3: (1,6), + Pt4: (2,8), Pt5: (3,2), Pt6: (0,4), Pt7: (9,0), Pt8: (7,1), + Pt9: (3,3)} + NULL + NULL Location: 1:1400 Links: 1 Storage: 0 logical bytes, 0 allocated bytes @@ -17,10 +20,10 @@ Dataset2 Dataset {10/10, 10/10} Storage: 100 logical bytes, 100 allocated bytes, 100.00% utilization Type: native unsigned char Data: - (0,0) 0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45, 48, - (1,7) 51, 54, 57, 60, 63, 66, 69, 72, 75, 78, 81, 84, 87, 90, 93, 96, - (3,3) 99, 102, 105, 108, 111, 114, 117, 120, 123, 126, 129, 132, 135, - (4,6) 138, 141, 144, 147, 150, 153, 156, 159, 162, 165, 168, 171, 174, - (5,9) 177, 180, 183, 186, 189, 192, 195, 198, 201, 204, 207, 210, 213, - (7,2) 216, 219, 222, 225, 228, 231, 234, 237, 240, 243, 246, 249, 252, - (8,5) 255, 2, 5, 8, 11, 14, 17, 20, 23, 26, 29, 32, 35, 38, 41 + 0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45, 48, 51, 54, + 57, 60, 63, 66, 69, 72, 75, 78, 81, 84, 87, 90, 93, 96, 99, 102, 105, + 108, 111, 114, 117, 120, 123, 126, 129, 132, 135, 138, 141, 144, 147, + 150, 153, 156, 159, 162, 165, 168, 171, 174, 177, 180, 183, 186, 189, + 192, 195, 198, 201, 204, 207, 210, 213, 216, 219, 222, 225, 228, 231, + 234, 237, 240, 243, 246, 249, 252, 255, 2, 5, 8, 11, 14, 17, 20, 23, + 26, 29, 32, 35, 38, 41 diff --git a/tools/testfiles/tattrreg_le.ls b/tools/testfiles/tattrreg_le.ls index dd0be49..13fb320 100644 --- a/tools/testfiles/tattrreg_le.ls +++ b/tools/testfiles/tattrreg_le.ls @@ -2,9 +2,12 @@ Opened "tattrreg.h5" with sec2 driver. Dataset1 Dataset {NULL} Attribute: Attribute1 {4} Type: dataset region reference - Data: DSET-/Dataset2 {Blk0: (2,2)-(7,7)}, DSET-/Dataset2 {Pt0: (6,9), - Pt1: (2,2), Pt2: (8,4), Pt3: (1,6), Pt4: (2,8), Pt5: (3,2), - Pt6: (0,4), Pt7: (9,0), Pt8: (7,1), Pt9: (3,3)}, NULL, NULL + Data: DSET-/Dataset2 {Blk0: (2,2)-(7,7)} + DSET-/Dataset2 {Pt0: (6,9), Pt1: (2,2), Pt2: (8,4), Pt3: (1,6), + Pt4: (2,8), Pt5: (3,2), Pt6: (0,4), Pt7: (9,0), Pt8: (7,1), + Pt9: (3,3)} + NULL + NULL Location: 1:1400 Links: 1 Storage: 0 logical bytes, 0 allocated bytes @@ -17,10 +20,10 @@ Dataset2 Dataset {10/10, 10/10} Storage: 100 logical bytes, 100 allocated bytes, 100.00% utilization Type: 8-bit unsigned integer Data: - (0,0) 0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45, 48, - (1,7) 51, 54, 57, 60, 63, 66, 69, 72, 75, 78, 81, 84, 87, 90, 93, 96, - (3,3) 99, 102, 105, 108, 111, 114, 117, 120, 123, 126, 129, 132, 135, - (4,6) 138, 141, 144, 147, 150, 153, 156, 159, 162, 165, 168, 171, 174, - (5,9) 177, 180, 183, 186, 189, 192, 195, 198, 201, 204, 207, 210, 213, - (7,2) 216, 219, 222, 225, 228, 231, 234, 237, 240, 243, 246, 249, 252, - (8,5) 255, 2, 5, 8, 11, 14, 17, 20, 23, 26, 29, 32, 35, 38, 41 + 0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45, 48, 51, 54, + 57, 60, 63, 66, 69, 72, 75, 78, 81, 84, 87, 90, 93, 96, 99, 102, 105, + 108, 111, 114, 117, 120, 123, 126, 129, 132, 135, 138, 141, 144, 147, + 150, 153, 156, 159, 162, 165, 168, 171, 174, 177, 180, 183, 186, 189, + 192, 195, 198, 201, 204, 207, 210, 213, 216, 219, 222, 225, 228, 231, + 234, 237, 240, 243, 246, 249, 252, 255, 2, 5, 8, 11, 14, 17, 20, 23, + 26, 29, 32, 35, 38, 41 diff --git a/tools/testfiles/tcomp-1.ls b/tools/testfiles/tcomp-1.ls index a3969bd..38f4228 100644 --- a/tools/testfiles/tcomp-1.ls +++ b/tools/testfiles/tcomp-1.ls @@ -1,57 +1,57 @@ / Group /dset1 Dataset {5} Data: - (0) {0, 0, 1}, {1, 1, 0.5}, {2, 4, 0.333333333333333}, {3, 9, 0.25}, - (4) {4, 16, 0.2} + {0, 0, 1}, {1, 1, 0.5}, {2, 4, 0.333333333333333}, {3, 9, 0.25}, + {4, 16, 0.2} /group1 Group /group1/dset2 Dataset {5} Data: - (0) {0, 0}, {1, 1.1}, {2, 2.2}, {3, 3.3}, {4, 4.4} + {0, 0}, {1, 1.1}, {2, 2.2}, {3, 3.3}, {4, 4.4} /group1/dset3 Dataset {3, 6} Data: - (0,0) {[0,1,2,3], [1,2,3,4,5,6,2,3,4,5,6,7,3,4,5,6,7,8,4,5,6,7,8,9,5,6, - (0,0) 7,8,9,10]}, - (0,1) {[1,2,3,4], [2,3,4,5,6,7,3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8,9,10,6, - (0,1) 7,8,9,10,11]}, - (0,2) {[2,3,4,5], [3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11, - (0,2) 7,8,9,10,11,12]}, - (0,3) {[3,4,5,6], [4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11, - (0,3) 12,8,9,10,11,12,13]}, - (0,4) {[4,5,6,7], [5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11, - (0,4) 12,13,9,10,11,12,13,14]}, - (0,5) {[5,6,7,8], [6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11,12,13,9,10, - (0,5) 11,12,13,14,10,11,12,13,14,15]}, - (1,0) {[1,2,3,4], [2,3,4,5,6,7,3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8,9,10,6, - (1,0) 7,8,9,10,11]}, - (1,1) {[2,3,4,5], [3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11, - (1,1) 7,8,9,10,11,12]}, - (1,2) {[3,4,5,6], [4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11, - (1,2) 12,8,9,10,11,12,13]}, - (1,3) {[4,5,6,7], [5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11, - (1,3) 12,13,9,10,11,12,13,14]}, - (1,4) {[5,6,7,8], [6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11,12,13,9,10, - (1,4) 11,12,13,14,10,11,12,13,14,15]}, - (1,5) {[6,7,8,9], [7,8,9,10,11,12,8,9,10,11,12,13,9,10,11,12,13,14,10, - (1,5) 11,12,13,14,15,11,12,13,14,15,16]}, - (2,0) {[2,3,4,5], [3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11, - (2,0) 7,8,9,10,11,12]}, - (2,1) {[3,4,5,6], [4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11, - (2,1) 12,8,9,10,11,12,13]}, - (2,2) {[4,5,6,7], [5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11, - (2,2) 12,13,9,10,11,12,13,14]}, - (2,3) {[5,6,7,8], [6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11,12,13,9,10, - (2,3) 11,12,13,14,10,11,12,13,14,15]}, - (2,4) {[6,7,8,9], [7,8,9,10,11,12,8,9,10,11,12,13,9,10,11,12,13,14,10, - (2,4) 11,12,13,14,15,11,12,13,14,15,16]}, - (2,5) {[7,8,9,10], [8,9,10,11,12,13,9,10,11,12,13,14,10,11,12,13,14,15, - (2,5) 11,12,13,14,15,16,12,13,14,15,16,17]} + {[0,1,2,3], [1,2,3,4,5,6,2,3,4,5,6,7,3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8, + 9,10]}, + {[1,2,3,4], [2,3,4,5,6,7,3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9, + 10,11]}, + {[2,3,4,5], [3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11,7,8,9, + 10,11,12]}, + {[3,4,5,6], [4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11,12,8, + 9,10,11,12,13]}, + {[4,5,6,7], [5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11,12, + 13,9,10,11,12,13,14]}, + {[5,6,7,8], [6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11,12,13,9,10,11,12, + 13,14,10,11,12,13,14,15]}, + {[1,2,3,4], [2,3,4,5,6,7,3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9, + 10,11]}, + {[2,3,4,5], [3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11,7,8,9, + 10,11,12]}, + {[3,4,5,6], [4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11,12,8, + 9,10,11,12,13]}, + {[4,5,6,7], [5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11,12, + 13,9,10,11,12,13,14]}, + {[5,6,7,8], [6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11,12,13,9,10,11,12, + 13,14,10,11,12,13,14,15]}, + {[6,7,8,9], [7,8,9,10,11,12,8,9,10,11,12,13,9,10,11,12,13,14,10,11,12, + 13,14,15,11,12,13,14,15,16]}, + {[2,3,4,5], [3,4,5,6,7,8,4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11,7,8,9, + 10,11,12]}, + {[3,4,5,6], [4,5,6,7,8,9,5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11,12,8, + 9,10,11,12,13]}, + {[4,5,6,7], [5,6,7,8,9,10,6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11,12, + 13,9,10,11,12,13,14]}, + {[5,6,7,8], [6,7,8,9,10,11,7,8,9,10,11,12,8,9,10,11,12,13,9,10,11,12, + 13,14,10,11,12,13,14,15]}, + {[6,7,8,9], [7,8,9,10,11,12,8,9,10,11,12,13,9,10,11,12,13,14,10,11,12, + 13,14,15,11,12,13,14,15,16]}, + {[7,8,9,10], [8,9,10,11,12,13,9,10,11,12,13,14,10,11,12,13,14,15,11, + 12,13,14,15,16,12,13,14,15,16,17]} /group1/dset4 Dataset {5} Data: - (0) {0, 3}, {1, 4}, {2, 5}, {3, 6}, {4, 7} + {0, 3}, {1, 4}, {2, 5}, {3, 6}, {4, 7} /group1/type3 Type /group2 Group /group2/dset5 Dataset {5} Data: - (0) {0, 0}, {1, 0.1}, {2, 0.2}, {3, 0.3}, {4, 0.4} + {0, 0}, {1, 0.1}, {2, 0.2}, {3, 0.3}, {4, 0.4} /type1 Type /type2 Type diff --git a/tools/testfiles/tdataregbe.ls b/tools/testfiles/tdataregbe.ls index b9dd8f2..ae5e629 100644 --- a/tools/testfiles/tdataregbe.ls +++ b/tools/testfiles/tdataregbe.ls @@ -2,7 +2,7 @@ Opened "tdatareg.h5" with sec2 driver. Dataset1 Dataset {4/4} Location: 1:1284 Links: 1 - Storage: information not available + Storage: reference information not available Type: dataset region reference Dataset2 Dataset {10/10, 10/10} Location: 1:744 diff --git a/tools/testfiles/tdataregle.ls b/tools/testfiles/tdataregle.ls index 915f371..586b385 100644 --- a/tools/testfiles/tdataregle.ls +++ b/tools/testfiles/tdataregle.ls @@ -2,7 +2,7 @@ Opened "tdatareg.h5" with sec2 driver. Dataset1 Dataset {4/4} Location: 1:1284 Links: 1 - Storage: information not available + Storage: reference information not available Type: dataset region reference Dataset2 Dataset {10/10, 10/10} Location: 1:744 diff --git a/tools/testfiles/tdset_idx.ls b/tools/testfiles/tdset_idx.ls index daa14b2..db59632 100644 --- a/tools/testfiles/tdset_idx.ls +++ b/tools/testfiles/tdset_idx.ls @@ -1,36 +1,33 @@ dset_btree Dataset {20/200, 10/100} Data: - (0,0) 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, - (2,2) 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, - (4,4) 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, - (6,6) 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, - (8,8) 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, - (11,0) 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, - (13,2) 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, - (15,4) 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, - (17,6) 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, - (19,8) 8, 9 + 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, + 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, + 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, + 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, + 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, + 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, + 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, + 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, + 2, 3, 4, 5, 6, 7, 8, 9 dset_filter Dataset {20, 10} Data: - (0,0) 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, - (2,2) 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, - (4,4) 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, - (6,6) 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, - (8,8) 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, - (11,0) 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, - (13,2) 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, - (15,4) 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, - (17,6) 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, - (19,8) 8, 9 + 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, + 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, + 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, + 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, + 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, + 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, + 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, + 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, + 2, 3, 4, 5, 6, 7, 8, 9 dset_fixed Dataset {20, 10} Data: - (0,0) 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, - (2,2) 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, - (4,4) 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, - (6,6) 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, - (8,8) 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, - (11,0) 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, - (13,2) 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, - (15,4) 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, - (17,6) 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, - (19,8) 8, 9 + 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, + 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, + 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, + 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, + 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, + 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, + 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, + 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, 1, + 2, 3, 4, 5, 6, 7, 8, 9 diff --git a/tools/testfiles/tempty.ls b/tools/testfiles/tempty.ls index 38ecb55..a9d1e07 100644 --- a/tools/testfiles/tempty.ls +++ b/tools/testfiles/tempty.ls @@ -1,15 +1,15 @@ Dataset1.0 Dataset {4} Data: - (0) (), (), (), () + (), (), (), () Dataset2.0 Dataset {4} Data: - (0) 0, 0, 0, 0 + 0, 0, 0, 0 Dataset3.0 Dataset {4} Data: - (0) 0, 0, 0, 0 + 0, 0, 0, 0 Dataset4.0 Dataset {4} Data: - (0) [0,0,0,0], [0,0,0,0], [0,0,0,0], [0,0,0,0] + [0,0,0,0], [0,0,0,0], [0,0,0,0], [0,0,0,0] Dataset5.0 Dataset {4} Data: - (0) {0, 0, 0}, {0, 0, 0}, {0, 0, 0}, {0, 0, 0} + {0, 0, 0}, {0, 0, 0}, {0, 0, 0}, {0, 0, 0} diff --git a/tools/testfiles/tgrpnullspace.ls b/tools/testfiles/tgrpnullspace.ls index 439414c..62689c0 100644 --- a/tools/testfiles/tgrpnullspace.ls +++ b/tools/testfiles/tgrpnullspace.ls @@ -2,6 +2,5 @@ Opened "tgrpnullspace.h5" with sec2 driver. g1 Group Attribute: attr null Type: 32-bit little-endian unsigned integer - Location: 1:800 Links: 1 diff --git a/tools/testfiles/tnestcomp-1.ls b/tools/testfiles/tnestcomp-1.ls index 425d92f..c6342e1 100644 --- a/tools/testfiles/tnestcomp-1.ls +++ b/tools/testfiles/tnestcomp-1.ls @@ -1,11 +1,11 @@ / Group /ArrayOfStructures Dataset {10} Data: - (0) {0, 0, 1, {"A", [-100,100]}}, {1, 1, 0.5, {"B", [-100,100]}}, - (2) {2, 4, 0.333333333333333, {"C", [-100,100]}}, - (3) {3, 9, 0.25, {"D", [-100,100]}}, {4, 16, 0.2, {"E", [-100,100]}}, - (5) {5, 25, 0.166666666666667, {"F", [-100,100]}}, - (6) {6, 36, 0.142857142857143, {"G", [-100,100]}}, - (7) {7, 49, 0.125, {"H", [-100,100]}}, - (8) {8, 64, 0.111111111111111, {"I", [-100,100]}}, - (9) {9, 81, 0.1, {"J", [-100,100]}} + {0, 0, 1, {"A", [-100,100]}}, {1, 1, 0.5, {"B", [-100,100]}}, + {2, 4, 0.333333333333333, {"C", [-100,100]}}, + {3, 9, 0.25, {"D", [-100,100]}}, {4, 16, 0.2, {"E", [-100,100]}}, + {5, 25, 0.166666666666667, {"F", [-100,100]}}, + {6, 36, 0.142857142857143, {"G", [-100,100]}}, + {7, 49, 0.125, {"H", [-100,100]}}, + {8, 64, 0.111111111111111, {"I", [-100,100]}}, + {9, 81, 0.1, {"J", [-100,100]}} diff --git a/tools/testfiles/tnestcomp-3.ls b/tools/testfiles/tnestcomp-3.ls index 0a230cc..d9a6a1f 100644 --- a/tools/testfiles/tnestcomp-3.ls +++ b/tools/testfiles/tnestcomp-3.ls @@ -1,23 +1,23 @@ / Group /ArrayOfStructures Dataset {10} Data: - (0) {a_name=0, b_name=0, c_name=1, d_name={char_name="A", - (0) array_name=[-100,100]}}, - (1) {a_name=1, b_name=1, c_name=0.5, d_name={char_name="B", - (1) array_name=[-100,100]}}, - (2) {a_name=2, b_name=4, c_name=0.333333333333333, - (2) d_name={char_name="C", array_name=[-100,100]}}, - (3) {a_name=3, b_name=9, c_name=0.25, d_name={char_name="D", - (3) array_name=[-100,100]}}, - (4) {a_name=4, b_name=16, c_name=0.2, d_name={char_name="E", - (4) array_name=[-100,100]}}, - (5) {a_name=5, b_name=25, c_name=0.166666666666667, - (5) d_name={char_name="F", array_name=[-100,100]}}, - (6) {a_name=6, b_name=36, c_name=0.142857142857143, - (6) d_name={char_name="G", array_name=[-100,100]}}, - (7) {a_name=7, b_name=49, c_name=0.125, d_name={char_name="H", - (7) array_name=[-100,100]}}, - (8) {a_name=8, b_name=64, c_name=0.111111111111111, - (8) d_name={char_name="I", array_name=[-100,100]}}, - (9) {a_name=9, b_name=81, c_name=0.1, d_name={char_name="J", - (9) array_name=[-100,100]}} + {a_name=0, b_name=0, c_name=1, d_name={char_name="A", + array_name=[-100,100]}}, + {a_name=1, b_name=1, c_name=0.5, d_name={char_name="B", + array_name=[-100,100]}}, + {a_name=2, b_name=4, c_name=0.333333333333333, d_name={char_name="C", + array_name=[-100,100]}}, + {a_name=3, b_name=9, c_name=0.25, d_name={char_name="D", + array_name=[-100,100]}}, + {a_name=4, b_name=16, c_name=0.2, d_name={char_name="E", + array_name=[-100,100]}}, + {a_name=5, b_name=25, c_name=0.166666666666667, + d_name={char_name="F", array_name=[-100,100]}}, + {a_name=6, b_name=36, c_name=0.142857142857143, + d_name={char_name="G", array_name=[-100,100]}}, + {a_name=7, b_name=49, c_name=0.125, d_name={char_name="H", + array_name=[-100,100]}}, + {a_name=8, b_name=64, c_name=0.111111111111111, + d_name={char_name="I", array_name=[-100,100]}}, + {a_name=9, b_name=81, c_name=0.1, d_name={char_name="J", + array_name=[-100,100]}} diff --git a/tools/testfiles/treference.ddl b/tools/testfiles/treference.ddl index 4683ce5..ab40b2e 100644 --- a/tools/testfiles/treference.ddl +++ b/tools/testfiles/treference.ddl @@ -847,34 +847,146 @@ GROUP "/" { DATATYPE H5T_REFERENCE { H5T_STD_REF_OBJECT } DATASPACE SIMPLE { ( 2 ) / ( 2 ) } DATA { - (0): DATASET 976 /dset , DATASET 976 /dset + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } } } ATTRIBUTE "reference2D" { DATATYPE H5T_REFERENCE { H5T_STD_REF_OBJECT } DATASPACE SIMPLE { ( 3, 2 ) / ( 3, 2 ) } DATA { - (0,0): DATASET 976 /dset , DATASET 976 /dset , - (1,0): DATASET 976 /dset , DATASET 976 /dset , - (2,0): DATASET 976 /dset , DATASET 976 /dset + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } } } ATTRIBUTE "reference3D" { DATATYPE H5T_REFERENCE { H5T_STD_REF_OBJECT } DATASPACE SIMPLE { ( 4, 3, 2 ) / ( 4, 3, 2 ) } DATA { - (0,0,0): DATASET 976 /dset , DATASET 976 /dset , - (0,1,0): DATASET 976 /dset , DATASET 976 /dset , - (0,2,0): DATASET 976 /dset , DATASET 976 /dset , - (1,0,0): DATASET 976 /dset , DATASET 976 /dset , - (1,1,0): DATASET 976 /dset , DATASET 976 /dset , - (1,2,0): DATASET 976 /dset , DATASET 976 /dset , - (2,0,0): DATASET 976 /dset , DATASET 976 /dset , - (2,1,0): DATASET 976 /dset , DATASET 976 /dset , - (2,2,0): DATASET 976 /dset , DATASET 976 /dset , - (3,0,0): DATASET 976 /dset , DATASET 976 /dset , - (3,1,0): DATASET 976 /dset , DATASET 976 /dset , - (3,2,0): DATASET 976 /dset , DATASET 976 /dset + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } } } ATTRIBUTE "string" { @@ -1805,34 +1917,146 @@ GROUP "/" { DATATYPE H5T_REFERENCE { H5T_STD_REF_OBJECT } DATASPACE SIMPLE { ( 2 ) / ( 2 ) } DATA { - (0): DATASET 976 /dset , DATASET 976 /dset + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } } } DATASET "reference2D" { DATATYPE H5T_REFERENCE { H5T_STD_REF_OBJECT } DATASPACE SIMPLE { ( 3, 2 ) / ( 3, 2 ) } DATA { - (0,0): DATASET 976 /dset , DATASET 976 /dset , - (1,0): DATASET 976 /dset , DATASET 976 /dset , - (2,0): DATASET 976 /dset , DATASET 976 /dset + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } } } DATASET "reference3D" { DATATYPE H5T_REFERENCE { H5T_STD_REF_OBJECT } DATASPACE SIMPLE { ( 4, 3, 2 ) / ( 4, 3, 2 ) } DATA { - (0,0,0): DATASET 976 /dset , DATASET 976 /dset , - (0,1,0): DATASET 976 /dset , DATASET 976 /dset , - (0,2,0): DATASET 976 /dset , DATASET 976 /dset , - (1,0,0): DATASET 976 /dset , DATASET 976 /dset , - (1,1,0): DATASET 976 /dset , DATASET 976 /dset , - (1,2,0): DATASET 976 /dset , DATASET 976 /dset , - (2,0,0): DATASET 976 /dset , DATASET 976 /dset , - (2,1,0): DATASET 976 /dset , DATASET 976 /dset , - (2,2,0): DATASET 976 /dset , DATASET 976 /dset , - (3,0,0): DATASET 976 /dset , DATASET 976 /dset , - (3,1,0): DATASET 976 /dset , DATASET 976 /dset , - (3,2,0): DATASET 976 /dset , DATASET 976 /dset + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } + DATASET tattr2.h5/dset + DATA { + (0): 0, 0 + } } } DATASET "string" { diff --git a/tools/testfiles/tsaf.ls b/tools/testfiles/tsaf.ls index c950d7d..c62d6d0 100644 --- a/tools/testfiles/tsaf.ls +++ b/tools/testfiles/tsaf.ls @@ -1,661 +1,618 @@ / Group /.DSL_METADATA Dataset {5919/Inf} Data: - (0) 47, 32, 67, 79, 78, 84, 65, 73, 78, 69, 82, 10, 47, 46, 97, 116, - (16) 116, 114, 105, 98, 117, 116, 101, 115, 32, 67, 79, 78, 84, 65, 73, - (31) 78, 69, 82, 10, 47, 46, 97, 116, 116, 114, 105, 98, 117, 116, 101, - (46) 115, 47, 100, 97, 116, 97, 98, 97, 115, 101, 32, 67, 79, 78, 84, - (61) 65, 73, 78, 69, 82, 10, 47, 46, 97, 116, 116, 114, 105, 98, 117, - (76) 116, 101, 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""}, {0, 0, 0, "none"}, {1, 2, 1, ""}, {1, 2, - (0) 0, ""}, 1, 0, 1, 0} + {-604320037, ".", "don't import", 1, {0, 0, 0, "none"}, {0, 1, 0, + "devel"}, {1, 3, 0, ""}, {0, 0, 0, "none"}, {1, 2, 1, ""}, {1, 2, 0, + ""}, 1, 0, 1, 0} /Blob Dataset {24/Inf} Data: - (0) {-1, 1, 0, 1, 9, 0, 1}, {-1, 2, 0, 1, 4, 1, 1}, - (2) {-1, 3, 0, 1, 7, 2, 1}, {-1, 4, 0, 1, 4, 3, 1}, - (4) {-1, 5, 0, 1, 5, 4, 1}, {-1, 6, 0, 1, 3, 5, 1}, - (6) {-1, 7, 0, 1, 4, 6, 1}, {-1, 8, 0, 1, 1, 7, 1}, - (8) {-1, 9, 0, 1, 10, 8, 1}, {-1, 10, 0, 1, 4, 9, 1}, - (10) {-1, 11, 0, 1, 3, 10, 1}, {-1, 12, 0, 1, 5, 11, 1}, - (12) {-1, 13, 0, 1, 5, 12, 1}, {-1, 14, 0, 1, 16, 13, 1}, - (14) {-1, 15, 0, 1, 9, 14, 1}, {-1, 16, 0, 1, 4, 15, 1}, - (16) {-1, 17, 0, 1, 16, 16, 1}, {-1, 18, 0, 1, 36, 17, 1}, - (18) {-1, 19, 0, 1, 5, 18, 1}, {-1, 20, 0, 1, 5, 19, 1}, - (20) {-1, 21, 0, 1, 36, 20, 1}, {-1, 22, 0, 1, 12, 21, 1}, - (22) {-1, 23, 0, 1, 7, 22, 1}, {-1, 24, 0, 1, 2, 23, 1} + {-1, 1, 0, 1, 9, 0, 1}, {-1, 2, 0, 1, 4, 1, 1}, {-1, 3, 0, 1, 7, 2, + 1}, {-1, 4, 0, 1, 4, 3, 1}, {-1, 5, 0, 1, 5, 4, 1}, + {-1, 6, 0, 1, 3, 5, 1}, {-1, 7, 0, 1, 4, 6, 1}, {-1, 8, 0, 1, 1, 7, + 1}, {-1, 9, 0, 1, 10, 8, 1}, {-1, 10, 0, 1, 4, 9, 1}, + {-1, 11, 0, 1, 3, 10, 1}, {-1, 12, 0, 1, 5, 11, 1}, + {-1, 13, 0, 1, 5, 12, 1}, {-1, 14, 0, 1, 16, 13, 1}, + {-1, 15, 0, 1, 9, 14, 1}, {-1, 16, 0, 1, 4, 15, 1}, + {-1, 17, 0, 1, 16, 16, 1}, {-1, 18, 0, 1, 36, 17, 1}, + {-1, 19, 0, 1, 5, 18, 1}, {-1, 20, 0, 1, 5, 19, 1}, + {-1, 21, 0, 1, 36, 20, 1}, {-1, 22, 0, 1, 12, 21, 1}, + {-1, 23, 0, 1, 7, 22, 1}, {-1, 24, 0, 1, 2, 23, 1} /Cat Dataset {5/Inf} Data: - (0) {"nodes", TOPO, 0, 0, 1}, {"elems", TOPO, 2, 1, 1}, - (2) {"edges", USERD, 1, 2, 1}, {"blocks", BLOCK, 2, 3, 1}, - (4) {"side_sets", USERD, 1, 4, 1} + {"nodes", TOPO, 0, 0, 1}, {"elems", TOPO, 2, 1, 1}, + {"edges", USERD, 1, 2, 1}, {"blocks", BLOCK, 2, 3, 1}, + {"side_sets", USERD, 1, 4, 1} /Collection Dataset {24/Inf} Data: - (0) {0, 0, POINT, 18, 0, 0, -2, 0, 1}, - (1) {0, 1, MIXED, 12, 1, 1, -2, 1, 1}, {0, 3, NONE, 4, 2, 1, 0, 2, 1}, - (3) {0, 4, NONE, 2, 3, 0, 1, 3, 1}, {1, 0, POINT, 9, 4, 0, -2, 4, 1}, - (5) {1, 1, QUAD, 4, 5, 1, -2, 5, 1}, {1, 3, NONE, 1, 6, 1, 2, 6, 1}, - (7) {2, 0, POINT, 7, 7, 0, -2, 7, 1}, {2, 1, MIXED, 4, 8, 1, -2, 8, 1}, - (9) {2, 3, NONE, 2, 9, 1, 3, 9, 1}, {3, 0, POINT, 10, 10, 0, -2, 10, - (10) 1}, {3, 1, QUAD, 4, 11, 1, -2, 11, 1}, - (12) {3, 3, NONE, 1, 12, 1, 4, 12, 1}, - (13) {4, 0, POINT, 3, 13, 0, -2, 13, 1}, - (14) {4, 2, LINE, 2, 14, 1, -2, 14, 1}, - (15) {5, 0, POINT, 5, 15, 0, -2, 15, 1}, - (16) {5, 2, LINE, 4, 16, 1, -2, 16, 1}, - (17) {6, 0, POINT, 5, 17, 1, -2, 17, 1}, - (18) {7, 0, POINT, 5, 18, 0, -2, 18, 1}, - (19) {7, 1, TRI, 3, 19, 1, -2, 19, 1}, {7, 3, NONE, 1, 20, 1, 5, 20, - (20) 1}, {8, 0, POINT, 4, 21, 0, -2, 21, 1}, - (22) {8, 1, QUAD, 1, 22, 1, -2, 22, 1}, {8, 3, NONE, 1, 23, 1, 6, 23, - (23) 1} + {0, 0, POINT, 18, 0, 0, -2, 0, 1}, {0, 1, MIXED, 12, 1, 1, -2, 1, 1}, + {0, 3, NONE, 4, 2, 1, 0, 2, 1}, {0, 4, NONE, 2, 3, 0, 1, 3, 1}, + {1, 0, POINT, 9, 4, 0, -2, 4, 1}, {1, 1, QUAD, 4, 5, 1, -2, 5, 1}, + {1, 3, NONE, 1, 6, 1, 2, 6, 1}, {2, 0, POINT, 7, 7, 0, -2, 7, 1}, + {2, 1, MIXED, 4, 8, 1, -2, 8, 1}, {2, 3, NONE, 2, 9, 1, 3, 9, 1}, + {3, 0, POINT, 10, 10, 0, -2, 10, 1}, {3, 1, QUAD, 4, 11, 1, -2, 11, + 1}, {3, 3, NONE, 1, 12, 1, 4, 12, 1}, + {4, 0, POINT, 3, 13, 0, -2, 13, 1}, {4, 2, LINE, 2, 14, 1, -2, 14, 1}, + {5, 0, POINT, 5, 15, 0, -2, 15, 1}, {5, 2, LINE, 4, 16, 1, -2, 16, 1}, + {6, 0, POINT, 5, 17, 1, -2, 17, 1}, {7, 0, POINT, 5, 18, 0, -2, 18, + 1}, {7, 1, TRI, 3, 19, 1, -2, 19, 1}, {7, 3, NONE, 1, 20, 1, 5, 20, + 1}, {8, 0, POINT, 4, 21, 0, -2, 21, 1}, + {8, 1, QUAD, 1, 22, 1, -2, 22, 1}, {8, 3, NONE, 1, 23, 1, 6, 23, 1} /Field Dataset {14/Inf} Data: - (0) {1, "X", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, -2, -2, - (0) -2, 0, 1}, - (1) {1, "Y", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, -2, -2, - (1) -2, 1, 1}, - (2) {0, "coords", -7, -2, VECTOR, -2, 0, 1, 0, PWLINEAR, 1, 1, 7, -2, - (2) -2, 17, 2, 1}, - (3) {2, "distribution factors", -5, -2, NONE, -2, 0, 1, 0, PWLINEAR, - (3) 1, 0, -2, -2, -2, 18, 3, 1}, - (4) {3, "temperature", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, - (4) -2, -2, 19, 4, 1}, - (5) {1, "dX", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, -2, -2, - (5) -2, 5, 1}, - (6) {1, "dY", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, -2, -2, - (6) -2, 6, 1}, - (7) {0, "displacements", -7, -2, VECTOR, -2, 0, 1, 0, PWLINEAR, 1, 0, - (7) 8, -2, -2, 20, 7, 1}, - (8) {5, "Sx", -7, -2, NONE, -2, 1, 1, 1, PWCONST, 1, 0, -2, -2, -2, - (8) -2, 8, 1}, - (9) {5, "Sy", -7, -2, NONE, -2, 1, 1, 1, PWCONST, 1, 0, -2, -2, -2, - (9) -2, 9, 1}, - (10) {5, "Sxy", -7, -2, NONE, -2, 1, 1, 1, PWCONST, 1, 0, -2, -2, -2, - (10) -2, 10, 1}, - (11) {4, "stress", -7, -2, VECTOR, -2, 1, 1, 1, PWCONST, 1, 0, 9, -2, - (11) -2, 21, 11, 1}, - (12) {6, "temperature", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, - (12) -2, -2, 22, 12, 1}, - (13) {7, "pressure", -7, -2, NONE, -2, 2, 1, 2, PWCONST, 1, 0, -2, -2, - (13) -2, 23, 13, 1} + {1, "X", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, -2, -2, -2, + 0, 1}, + {1, "Y", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, -2, -2, -2, + 1, 1}, + {0, "coords", -7, -2, VECTOR, -2, 0, 1, 0, PWLINEAR, 1, 1, 7, -2, -2, + 17, 2, 1}, + {2, "distribution factors", -5, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, + 0, -2, -2, -2, 18, 3, 1}, + {3, "temperature", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, -2, + -2, 19, 4, 1}, + {1, "dX", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, -2, -2, -2, + 5, 1}, + {1, "dY", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, -2, -2, -2, + 6, 1}, + {0, "displacements", -7, -2, VECTOR, -2, 0, 1, 0, PWLINEAR, 1, 0, 8, + -2, -2, 20, 7, 1}, + {5, "Sx", -7, -2, NONE, -2, 1, 1, 1, PWCONST, 1, 0, -2, -2, -2, -2, + 8, 1}, + {5, "Sy", -7, -2, NONE, -2, 1, 1, 1, PWCONST, 1, 0, -2, -2, -2, -2, + 9, 1}, + {5, "Sxy", -7, -2, NONE, -2, 1, 1, 1, PWCONST, 1, 0, -2, -2, -2, -2, + 10, 1}, + {4, "stress", -7, -2, VECTOR, -2, 1, 1, 1, PWCONST, 1, 0, 9, -2, -2, + 21, 11, 1}, + {6, "temperature", -7, -2, NONE, -2, 0, 1, 0, PWLINEAR, 1, 0, -2, -2, + -2, 22, 12, 1}, + {7, "pressure", -7, -2, NONE, -2, 2, 1, 2, PWCONST, 1, 0, -2, -2, -2, + 23, 13, 1} /FieldTmpl Dataset {8/Inf} Data: - (0) {"coordinate_tmpl", 0, VECTOR, CARTESIAN, 2, 2, 0, 0, 1}, - (1) {"coordinate_tmpl_component", 0, SCALAR, CARTESIAN, 2, 1, 0, 1, 1}, - (2) {"distrib_factors_tmpl", 5, SCALAR, UNITY, -5, 1, 0, 2, 1}, - (3) {"temp_on_ns1_tmpl", 6, SCALAR, UNITY, 0, 1, 0, 3, 1}, - (4) {"stress_on_cell_1_tmpl", 1, SYM_TENSOR, UPPER_TRI, 0, 3, 0, 4, 1}, - (5) {"stress_on_cell_1_tmpl_component", 1, SCALAR, UPPER_TRI, 0, 1, 0, - (5) 5, 1}, {"temp_on_cell_2_tmpl", 2, SCALAR, UNITY, 1, 1, 0, 6, 1}, - (7) {"pressure_on_ss1", 4, SCALAR, UNITY, 0, 1, 0, 7, 1} + {"coordinate_tmpl", 0, VECTOR, CARTESIAN, 2, 2, 0, 0, 1}, + {"coordinate_tmpl_component", 0, SCALAR, CARTESIAN, 2, 1, 0, 1, 1}, + {"distrib_factors_tmpl", 5, SCALAR, UNITY, -5, 1, 0, 2, 1}, + {"temp_on_ns1_tmpl", 6, SCALAR, UNITY, 0, 1, 0, 3, 1}, + {"stress_on_cell_1_tmpl", 1, SYM_TENSOR, UPPER_TRI, 0, 3, 0, 4, 1}, + {"stress_on_cell_1_tmpl_component", 1, SCALAR, UPPER_TRI, 0, 1, 0, 5, + 1}, {"temp_on_cell_2_tmpl", 2, SCALAR, UNITY, 1, 1, 0, 6, 1}, + {"pressure_on_ss1", 4, SCALAR, UNITY, 0, 1, 0, 7, 1} /IndexSpec Dataset {24/Inf} Data: - (0) {1, {[0,0,0,0,0,0,0,0]}, {[18,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (0) 0]}, C_ORDER, 0, 1}, - (1) {1, {[0,0,0,0,0,0,0,0]}, {[12,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (1) 0]}, C_ORDER, 1, 1}, - (2) {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, - (2) C_ORDER, 2, 1}, - (3) {1, {[0,0,0,0,0,0,0,0]}, {[2,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, - (3) C_ORDER, 3, 1}, - (4) {1, {[0,0,0,0,0,0,0,0]}, {[9,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, - (4) C_ORDER, 4, 1}, - (5) {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, - (5) C_ORDER, 5, 1}, - (6) {1, {[0,0,0,0,0,0,0,0]}, {[1,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, - (6) C_ORDER, 6, 1}, - (7) {1, {[0,0,0,0,0,0,0,0]}, {[7,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, - (7) C_ORDER, 7, 1}, - (8) {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, - (8) C_ORDER, 8, 1}, - (9) {1, {[0,0,0,0,0,0,0,0]}, {[2,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, - (9) C_ORDER, 9, 1}, - (10) {1, {[0,0,0,0,0,0,0,0]}, {[10,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (10) 0]}, C_ORDER, 10, 1}, - (11) {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (11) 0]}, C_ORDER, 11, 1}, - (12) {1, {[0,0,0,0,0,0,0,0]}, {[1,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (12) 0]}, C_ORDER, 12, 1}, - (13) {1, {[0,0,0,0,0,0,0,0]}, {[3,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (13) 0]}, C_ORDER, 13, 1}, - (14) {1, {[0,0,0,0,0,0,0,0]}, {[2,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (14) 0]}, C_ORDER, 14, 1}, - (15) {1, {[0,0,0,0,0,0,0,0]}, {[5,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (15) 0]}, C_ORDER, 15, 1}, - (16) {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (16) 0]}, C_ORDER, 16, 1}, - (17) {1, {[0,0,0,0,0,0,0,0]}, {[5,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (17) 0]}, C_ORDER, 17, 1}, - (18) {1, {[0,0,0,0,0,0,0,0]}, {[5,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (18) 0]}, C_ORDER, 18, 1}, - (19) {1, {[0,0,0,0,0,0,0,0]}, {[3,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (19) 0]}, C_ORDER, 19, 1}, - (20) {1, {[0,0,0,0,0,0,0,0]}, {[1,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (20) 0]}, C_ORDER, 20, 1}, - (21) {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (21) 0]}, C_ORDER, 21, 1}, - (22) {1, {[0,0,0,0,0,0,0,0]}, {[1,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (22) 0]}, C_ORDER, 22, 1}, - (23) {1, {[0,0,0,0,0,0,0,0]}, {[1,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0, - (23) 0]}, C_ORDER, 23, 1} + {1, {[0,0,0,0,0,0,0,0]}, {[18,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 0, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[12,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 1, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 2, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[2,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 3, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[9,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 4, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 5, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[1,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 6, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[7,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 7, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 8, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[2,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 9, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[10,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 10, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 11, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[1,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 12, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[3,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 13, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[2,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 14, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[5,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 15, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 16, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[5,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 17, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[5,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 18, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[3,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 19, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[1,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 20, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[4,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 21, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[1,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 22, 1}, + {1, {[0,0,0,0,0,0,0,0]}, {[1,0,0,0,0,0,0,0]}, {[0,0,0,0,0,0,0,0]}, + C_ORDER, 23, 1} /Relation Dataset {21/Inf} Data: - (0) {1, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 0, 0, 1}, - (1) {1, 1, -2, 0, 1, -2, EQUAL, TLIST, -2, 1, 1, 1}, - (2) {2, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 2, 2, 1}, - (3) {2, 1, -2, 0, 1, -2, EQUAL, TLIST, -2, 3, 3, 1}, - (4) {7, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 4, 4, 1}, - (5) {7, 1, -2, 0, 1, -2, EQUAL, TLIST, -2, 5, 5, 1}, - (6) {8, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 6, 6, 1}, - (7) {8, 1, -2, 0, 1, -2, EQUAL, TLIST, -2, 7, 7, 1}, - (8) {3, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 8, 8, 1}, - (9) {3, 1, -2, 0, 1, -2, EQUAL, TLIST, -2, 9, 9, 1}, - (10) {4, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 10, 10, 1}, - (11) {5, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 11, 11, 1}, - (12) {6, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 12, 12, 1}, - (13) {1, 3, -2, 0, 3, -2, EQUAL, TLIST, -2, -2, 13, 1}, - (14) {7, 3, -2, 0, 3, -2, EQUAL, TLIST, -2, -2, 14, 1}, - (15) {8, 3, -2, 0, 3, -2, EQUAL, TLIST, -2, -2, 15, 1}, - (16) {3, 3, -2, 0, 3, -2, EQUAL, TLIST, -2, -2, 16, 1}, - (17) {1, 1, -2, 0, 0, -2, SUBSET, UNSTRUCTURED, -2, 13, 17, 1}, - (18) {7, 1, -2, 0, 0, -2, SUBSET, UNSTRUCTURED, -2, 14, 18, 1}, - (19) {8, 1, -2, 0, 0, -2, SUBSET, UNSTRUCTURED, -2, 15, 19, 1}, - (20) {3, 1, -2, 0, 0, -2, SUBSET, UNSTRUCTURED, -2, 16, 20, 1} + {1, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 0, 0, 1}, + {1, 1, -2, 0, 1, -2, EQUAL, TLIST, -2, 1, 1, 1}, + {2, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 2, 2, 1}, + {2, 1, -2, 0, 1, -2, EQUAL, TLIST, -2, 3, 3, 1}, + {7, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 4, 4, 1}, + {7, 1, -2, 0, 1, -2, EQUAL, TLIST, -2, 5, 5, 1}, + {8, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 6, 6, 1}, + {8, 1, -2, 0, 1, -2, EQUAL, TLIST, -2, 7, 7, 1}, + {3, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 8, 8, 1}, + {3, 1, -2, 0, 1, -2, EQUAL, TLIST, -2, 9, 9, 1}, + {4, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 10, 10, 1}, + {5, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 11, 11, 1}, + {6, 0, -2, 0, 0, -2, EQUAL, TLIST, -2, 12, 12, 1}, + {1, 3, -2, 0, 3, -2, EQUAL, TLIST, -2, -2, 13, 1}, + {7, 3, -2, 0, 3, -2, EQUAL, TLIST, -2, -2, 14, 1}, + {8, 3, -2, 0, 3, -2, EQUAL, TLIST, -2, -2, 15, 1}, + {3, 3, -2, 0, 3, -2, EQUAL, TLIST, -2, -2, 16, 1}, + {1, 1, -2, 0, 0, -2, SUBSET, UNSTRUCTURED, -2, 13, 17, 1}, + {7, 1, -2, 0, 0, -2, SUBSET, UNSTRUCTURED, -2, 14, 18, 1}, + {8, 1, -2, 0, 0, -2, SUBSET, UNSTRUCTURED, -2, 15, 19, 1}, + {3, 1, -2, 0, 0, -2, SUBSET, UNSTRUCTURED, -2, 16, 20, 1} /Set Dataset {9/Inf} Data: - (0) {0, "TOP_CELL", 2, SPACE, {[0,1,-2,2,3,-2,-2,-2,-2,-2,-2,-2,-2,-2, - (0) -2,-2]}, 1, 0, -2, -2, 0, 1}, - (1) {0, "CELL_1", 2, SPACE, {[4,5,-2,6,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2, - (1) -2,-2]}, 0, 0, -2, -2, 1, 1}, - (2) {0, "CELL_2", 2, SPACE, {[7,8,-2,9,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2, - (2) -2,-2]}, 0, 0, -2, -2, 2, 1}, - (3) {0, "CELL_3", 2, SPACE, {[10,11,-2,12,-2,-2,-2,-2,-2,-2,-2,-2,-2, - (3) -2,-2,-2]}, 0, 0, -2, -2, 3, 1}, - (4) {0, "SIDE_SET_1", 1, SPACE, {[13,-2,14,-2,-2,-2,-2,-2,-2,-2,-2,-2, - (4) -2,-2,-2,-2]}, 0, 0, -2, -2, 4, 1}, - (5) {0, "SIDE_SET_2", 1, SPACE, {[15,-2,16,-2,-2,-2,-2,-2,-2,-2,-2,-2, - (5) -2,-2,-2,-2]}, 0, 0, -2, -2, 5, 1}, - (6) {0, "NODE_SET_1", 0, SPACE, {[17,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2, - (6) -2,-2,-2,-2]}, 0, 0, -2, -2, 6, 1}, - (7) {0, "CELL_2_TRIS", 2, SPACE, {[18,19,-2,20,-2,-2,-2,-2,-2,-2,-2,-2, - (7) -2,-2,-2,-2]}, 0, 0, -2, -2, 7, 1}, - (8) {0, "CELL_2_QUADS", 2, SPACE, {[21,22,-2,23,-2,-2,-2,-2,-2,-2,-2, - (8) -2,-2,-2,-2,-2]}, 0, 0, -2, -2, 8, 1} + {0, "TOP_CELL", 2, SPACE, {[0,1,-2,2,3,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2, + -2]}, 1, 0, -2, -2, 0, 1}, + {0, "CELL_1", 2, SPACE, {[4,5,-2,6,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2, + -2]}, 0, 0, -2, -2, 1, 1}, + {0, "CELL_2", 2, SPACE, {[7,8,-2,9,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2, + -2]}, 0, 0, -2, -2, 2, 1}, + {0, "CELL_3", 2, SPACE, {[10,11,-2,12,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2, + -2,-2]}, 0, 0, -2, -2, 3, 1}, + {0, "SIDE_SET_1", 1, SPACE, {[13,-2,14,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2, + -2,-2,-2]}, 0, 0, -2, -2, 4, 1}, + {0, "SIDE_SET_2", 1, SPACE, {[15,-2,16,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2, + -2,-2,-2]}, 0, 0, -2, -2, 5, 1}, + {0, "NODE_SET_1", 0, SPACE, {[17,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2, + -2,-2,-2]}, 0, 0, -2, -2, 6, 1}, + {0, "CELL_2_TRIS", 2, SPACE, {[18,19,-2,20,-2,-2,-2,-2,-2,-2,-2,-2,-2, + -2,-2,-2]}, 0, 0, -2, -2, 7, 1}, + {0, "CELL_2_QUADS", 2, SPACE, {[21,22,-2,23,-2,-2,-2,-2,-2,-2,-2,-2, + -2,-2,-2,-2]}, 0, 0, -2, -2, 8, 1} /field-coords_0002 Dataset {36} Data: - (0) 0, 4, 1, 4, 2, 4, 2.5, 4, 0, 3, 1, 3, 2, 3, 2.5, 3, 0, 2, 1, 2, 2, - (21) 2, 2.5, 2, 0, 1, 2, 1, 2.5, 1, 0, 0, 2, 0, 2.5, 0 + 0, 4, 1, 4, 2, 4, 2.5, 4, 0, 3, 1, 3, 2, 3, 2.5, 3, 0, 2, 1, 2, 2, 2, + 2.5, 2, 0, 1, 2, 1, 2.5, 1, 0, 0, 2, 0, 2.5, 0 /field-displacements_0007 Dataset {36} Data: - (0) 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, - (11) 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, - (22) 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, - (33) 0.25, 0.25, 0.25 + 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, + 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, + 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25 /field-distribution_factors_0003 Dataset {5} Data: - (0) 4, 3, 2, 1, 0 + 4, 3, 2, 1, 0 /field-pressure_0013 Dataset {2} Data: - (0) 45, 55 + 45, 55 /field-stress_0011 Dataset {12} Data: - (0) 0.5, 0.25, 0.5, 0.5, 0.25, 0.5, 0.5, 0.25, 0.5, 0.5, 0.25, 0.5 + 0.5, 0.25, 0.5, 0.5, 0.25, 0.5, 0.5, 0.25, 0.5, 0.5, 0.25, 0.5 /field-temperature_0004 Dataset {5} Data: - (0) 100, 150, 150, 100, 75 + 100, 150, 150, 100, 75 /field-temperature_0012 Dataset {7} Data: - (0) 75, 95, 120, 80, 115, 85, 110 + 75, 95, 120, 80, 115, 85, 110 /metablob00000.blob Dataset {19/Inf} Data: - (0) 1, 7, 8, 3, -2, -2, -2, -2, -2, -2, -2, -2, 0, 1, 5, 6, 8, 9, 10 + 1, 7, 8, 3, -2, -2, -2, -2, -2, -2, -2, -2, 0, 1, 5, 6, 8, 9, 10 /metablob00000.index Dataset {10/Inf} Data: - (0) {0, 4}, {4, 2}, {6, 1}, {7, 2}, {9, 1}, {10, 1}, {11, 1}, {12, 2}, - (8) {14, 2}, {16, 3} + {0, 4}, {4, 2}, {6, 1}, {7, 2}, {9, 1}, {10, 1}, {11, 1}, {12, 2}, + {14, 2}, {16, 3} /ssrel-_0000 Dataset {9} Data: - (0) 1, 2, 3, 5, 6, 7, 9, 10, 11 + 1, 2, 3, 5, 6, 7, 9, 10, 11 /ssrel-_0001 Dataset {4} Data: - (0) 1, 2, 4, 5 + 1, 2, 4, 5 /ssrel-_0002 Dataset {7} Data: - (0) 9, 10, 11, 13, 14, 16, 17 + 9, 10, 11, 13, 14, 16, 17 /ssrel-_0003 Dataset {4} Data: - (0) 7, 8, 9, 11 + 7, 8, 9, 11 /ssrel-_0004 Dataset {5} Data: - (0) 9, 10, 11, 13, 14 + 9, 10, 11, 13, 14 /ssrel-_0005 Dataset {3} Data: - (0) 7, 8, 9 + 7, 8, 9 /ssrel-_0006 Dataset {4} Data: - (0) 13, 14, 16, 17 + 13, 14, 16, 17 /ssrel-_0007 Dataset {1} Data: - (0) 11 + 11 /ssrel-_0008 Dataset {10} Data: - (0) 3, 4, 7, 8, 11, 12, 14, 15, 17, 18 + 3, 4, 7, 8, 11, 12, 14, 15, 17, 18 /ssrel-_0009 Dataset {4} Data: - (0) 3, 6, 10, 12 + 3, 6, 10, 12 /ssrel-_0010 Dataset {3} Data: - (0) 9, 10, 11 + 9, 10, 11 /ssrel-_0011 Dataset {5} Data: - (0) 1, 5, 9, 13, 16 + 1, 5, 9, 13, 16 /ssrel-_0012 Dataset {5} Data: - (0) 4, 8, 12, 15, 18 + 4, 8, 12, 15, 18 /toporel-_0017 Dataset {16} Data: - (0) 1, 2, 6, 5, 2, 3, 7, 6, 5, 6, 10, 9, 6, 7, 11, 10 + 1, 2, 6, 5, 2, 3, 7, 6, 5, 6, 10, 9, 6, 7, 11, 10 /toporel-_0018 Dataset {9} Data: - (0) 9, 10, 13, 10, 14, 13, 10, 11, 14 + 9, 10, 13, 10, 14, 13, 10, 11, 14 /toporel-_0019 Dataset {4} Data: - (0) 13, 14, 17, 16 + 13, 14, 17, 16 /toporel-_0020 Dataset {16} Data: - (0) 3, 4, 8, 7, 7, 8, 12, 11, 11, 12, 15, 14, 14, 15, 18, 17 + 3, 4, 8, 7, 7, 8, 12, 11, 11, 12, 15, 14, 14, 15, 18, 17 diff --git a/tools/testfiles/tstr-1.ls b/tools/testfiles/tstr-1.ls index 1ae4ecd..5c68d1a 100644 --- a/tools/testfiles/tstr-1.ls +++ b/tools/testfiles/tstr-1.ls @@ -1,330 +1,230 @@ / Group /comp1 Dataset {3, 6} Data: - (0,0) {[0,1,4,9,16,25,36,49,64,81,1,4,9,16,25,36,49,64,81,100,4,9,16, - (0,0) 25,36,49,64,81,100,121,9,16,25,36,49,64,81,100,121,144,16,25,36, - (0,0) 49,64,81,100,121,144,169,25,36,49,64,81,100,121,144,169,196,36, - (0,0) 49,64,81,100,121,144,169,196,225,49,64,81,100,121,144,169,196, - (0,0) 225,256], ["abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678", - (0,0) "abcdefgh12345678abcdefgh12345678"]}, - (0,1) {[1,4,9,16,25,36,49,64,81,100,4,9,16,25,36,49,64,81,100,121,9,16, - (0,1) 25,36,49,64,81,100,121,144,16,25,36,49,64,81,100,121,144,169,25, - (0,1) 36,49,64,81,100,121,144,169,196,36,49,64,81,100,121,144,169,196, - (0,1) 225,49,64,81,100,121,144,169,196,225,256,64,81,100,121,144,169, - (0,1) 196,225,256,289], ["abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678", - (0,1) "abcdefgh12345678abcdefgh12345678"]}, - (0,2) {[4,9,16,25,36,49,64,81,100,121,9,16,25,36,49,64,81,100,121,144, - (0,2) 16,25,36,49,64,81,100,121,144,169,25,36,49,64,81,100,121,144, - (0,2) 169,196,36,49,64,81,100,121,144,169,196,225,49,64,81,100,121, - (0,2) 144,169,196,225,256,64,81,100,121,144,169,196,225,256,289,81, - (0,2) 100,121,144,169,196,225,256,289,324], - (0,2) ["abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678", - (0,2) "abcdefgh12345678abcdefgh12345678"]}, - (0,3) {[9,16,25,36,49,64,81,100,121,144,16,25,36,49,64,81,100,121,144, - (0,3) 169,25,36,49,64,81,100,121,144,169,196,36,49,64,81,100,121,144, - (0,3) 169,196,225,49,64,81,100,121,144,169,196,225,256,64,81,100,121, - (0,3) 144,169,196,225,256,289,81,100,121,144,169,196,225,256,289,324, - (0,3) 100,121,144,169,196,225,256,289,324,361], - (0,3) ["abcdefgh12345678abcdefgh12345678", - (0,3) "abcdefgh12345678abcdefgh12345678", - (0,3) "abcdefgh12345678abcdefgh12345678", - (0,3) "abcdefgh12345678abcdefgh12345678", - (0,3) "abcdefgh12345678abcdefgh12345678", - (0,3) "abcdefgh12345678abcdefgh12345678", - (0,3) "abcdefgh12345678abcdefgh12345678", - (0,3) "abcdefgh12345678abcdefgh12345678", - (0,3) "abcdefgh12345678abcdefgh12345678", - (0,3) "abcdefgh12345678abcdefgh12345678", - (0,3) "abcdefgh12345678abcdefgh12345678", - 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+ ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]}, + {[4,9,16,25,36,49,64,81,100,121,9,16,25,36,49,64,81,100,121,144,16,25, + 36,49,64,81,100,121,144,169,25,36,49,64,81,100,121,144,169,196,36,49, + 64,81,100,121,144,169,196,225,49,64,81,100,121,144,169,196,225,256,64, + 81,100,121,144,169,196,225,256,289,81,100,121,144,169,196,225,256,289, + 324], ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]}, + {[9,16,25,36,49,64,81,100,121,144,16,25,36,49,64,81,100,121,144,169, + 25,36,49,64,81,100,121,144,169,196,36,49,64,81,100,121,144,169,196, + 225,49,64,81,100,121,144,169,196,225,256,64,81,100,121,144,169,196, + 225,256,289,81,100,121,144,169,196,225,256,289,324,100,121,144,169, + 196,225,256,289,324,361], ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]}, + {[16,25,36,49,64,81,100,121,144,169,25,36,49,64,81,100,121,144,169, + 196,36,49,64,81,100,121,144,169,196,225,49,64,81,100,121,144,169,196, + 225,256,64,81,100,121,144,169,196,225,256,289,81,100,121,144,169,196, + 225,256,289,324,100,121,144,169,196,225,256,289,324,361,121,144,169, + 196,225,256,289,324,361,400], ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]}, + {[25,36,49,64,81,100,121,144,169,196,36,49,64,81,100,121,144,169,196, + 225,49,64,81,100,121,144,169,196,225,256,64,81,100,121,144,169,196, + 225,256,289,81,100,121,144,169,196,225,256,289,324,100,121,144,169, + 196,225,256,289,324,361,121,144,169,196,225,256,289,324,361,400,144, + 169,196,225,256,289,324,361,400,441], + ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]}, + {[0,1,4,9,16,25,36,49,64,81,1,4,9,16,25,36,49,64,81,100,4,9,16,25,36, + 49,64,81,100,121,9,16,25,36,49,64,81,100,121,144,16,25,36,49,64,81, + 100,121,144,169,25,36,49,64,81,100,121,144,169,196,36,49,64,81,100, + 121,144,169,196,225,49,64,81,100,121,144,169,196,225,256], + ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]}, + {[1,4,9,16,25,36,49,64,81,100,4,9,16,25,36,49,64,81,100,121,9,16,25, + 36,49,64,81,100,121,144,16,25,36,49,64,81,100,121,144,169,25,36,49,64, + 81,100,121,144,169,196,36,49,64,81,100,121,144,169,196,225,49,64,81, + 100,121,144,169,196,225,256,64,81,100,121,144,169,196,225,256,289], + ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]}, + {[4,9,16,25,36,49,64,81,100,121,9,16,25,36,49,64,81,100,121,144,16,25, + 36,49,64,81,100,121,144,169,25,36,49,64,81,100,121,144,169,196,36,49, + 64,81,100,121,144,169,196,225,49,64,81,100,121,144,169,196,225,256,64, + 81,100,121,144,169,196,225,256,289,81,100,121,144,169,196,225,256,289, + 324], ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]}, + {[9,16,25,36,49,64,81,100,121,144,16,25,36,49,64,81,100,121,144,169, + 25,36,49,64,81,100,121,144,169,196,36,49,64,81,100,121,144,169,196, + 225,49,64,81,100,121,144,169,196,225,256,64,81,100,121,144,169,196, + 225,256,289,81,100,121,144,169,196,225,256,289,324,100,121,144,169, + 196,225,256,289,324,361], ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]}, + {[16,25,36,49,64,81,100,121,144,169,25,36,49,64,81,100,121,144,169, + 196,36,49,64,81,100,121,144,169,196,225,49,64,81,100,121,144,169,196, + 225,256,64,81,100,121,144,169,196,225,256,289,81,100,121,144,169,196, + 225,256,289,324,100,121,144,169,196,225,256,289,324,361,121,144,169, + 196,225,256,289,324,361,400], ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]}, + {[25,36,49,64,81,100,121,144,169,196,36,49,64,81,100,121,144,169,196, + 225,49,64,81,100,121,144,169,196,225,256,64,81,100,121,144,169,196, + 225,256,289,81,100,121,144,169,196,225,256,289,324,100,121,144,169, + 196,225,256,289,324,361,121,144,169,196,225,256,289,324,361,400,144, + 169,196,225,256,289,324,361,400,441], + ["abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678","abcdefgh12345678abcdefgh12345678", + "abcdefgh12345678abcdefgh12345678"]} /string1 Dataset {3, 4} Data: - (0,0) "s1", "s2", "s3", "s4", "s5", "s6", "s7", "s8", "s9", "s0", "s1", - (2,3) "s2" + "s1", "s2", "s3", "s4", "s5", "s6", "s7", "s8", "s9", "s0", "s1", "s2" /string2 Dataset {20} Data: - (0) "ab cd ef1 ", "ab cd ef2 ", "ab cd ef3 ", "ab cd ef4 ", - (4) "ab cd ef5 ", "ab cd ef6 ", "ab cd ef7 ", "ab cd ef8 ", - (8) "ab cd ef9 ", "ab cd ef0 ", "ab cd ef1 ", "ab cd ef2 ", - (12) "ab cd ef3 ", "ab cd ef4 ", "ab cd ef5 ", "ab cd ef6 ", - (16) "ab cd ef7 ", "ab cd ef8 ", "ab cd ef9 ", "ab cd ef0 " + "ab cd ef1 ", "ab cd ef2 ", "ab cd ef3 ", "ab cd ef4 ", + "ab cd ef5 ", "ab cd ef6 ", "ab cd ef7 ", "ab cd ef8 ", + "ab cd ef9 ", "ab cd ef0 ", "ab cd ef1 ", "ab cd ef2 ", + "ab cd ef3 ", "ab cd ef4 ", "ab cd ef5 ", "ab cd ef6 ", + "ab cd ef7 ", "ab cd ef8 ", "ab cd ef9 ", "ab cd ef0 " /string3 Dataset {27} Data: - (0) "abcd0\000\000\000", "abcd1\000\000\000", "abcd2\000\000\000", - (3) "abcd3\000\000\000", "abcd4\000\000\000", "abcd5\000\000\000", - (6) "abcd6\000\000\000", "abcd7\000\000\000", "abcd8\000\000\000", - (9) "abcd9\000\000\000", "abcd0\000\000\000", "abcd1\000\000\000", - (12) "abcd2\000\000\000", "abcd3\000\000\000", "abcd4\000\000\000", - (15) "abcd5\000\000\000", "abcd6\000\000\000", "abcd7\000\000\000", - (18) "abcd8\000\000\000", "abcd9\000\000\000", "abcd0\000\000\000", - (21) "abcd1\000\000\000", "abcd2\000\000\000", "abcd3\000\000\000", - (24) "abcd4\000\000\000", "abcd5\000\000\000", "abcd6\000\000\000" + "abcd0\000\000\000", "abcd1\000\000\000", "abcd2\000\000\000", + "abcd3\000\000\000", "abcd4\000\000\000", "abcd5\000\000\000", + "abcd6\000\000\000", "abcd7\000\000\000", "abcd8\000\000\000", + "abcd9\000\000\000", "abcd0\000\000\000", "abcd1\000\000\000", + "abcd2\000\000\000", "abcd3\000\000\000", "abcd4\000\000\000", + "abcd5\000\000\000", "abcd6\000\000\000", "abcd7\000\000\000", + "abcd8\000\000\000", "abcd9\000\000\000", "abcd0\000\000\000", + "abcd1\000\000\000", "abcd2\000\000\000", "abcd3\000\000\000", + "abcd4\000\000\000", "abcd5\000\000\000", "abcd6\000\000\000" /string4 Dataset {3} Data: - (0) "s1234567890123456789" ' ' repeats 147 times, - (1) "s1234567890123456789" ' ' repeats 147 times, - (2) "s1234567890123456789" ' ' repeats 147 times + "s1234567890123456789" ' ' repeats 147 times, + "s1234567890123456789" ' ' repeats 147 times, + "s1234567890123456789" ' ' repeats 147 times diff --git a/tools/testfiles/tudfilter.ls b/tools/testfiles/tudfilter.ls index 1882888..1db5fcf 100644 --- a/tools/testfiles/tudfilter.ls +++ b/tools/testfiles/tudfilter.ls @@ -1,16 +1,15 @@ dynlibud Dataset {20, 10} Data: - (0,0) 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, - (1,9) 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, - (3,5) 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, - (5,1) 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, - (6,7) 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, - (8,3) 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, - (9,9) 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, - (11,2) 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, - (12,5) 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, - (13,8) 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, - (15,1) 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, - (16,4) 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, - (17,7) 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, - (19,0) 190, 191, 192, 193, 194, 195, 196, 197, 198, 199 + 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, + 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, + 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, + 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, + 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, + 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, + 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, + 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, + 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, + 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, + 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, + 192, 193, 194, 195, 196, 197, 198, 199 diff --git a/tools/testfiles/tvldtypes1.ls b/tools/testfiles/tvldtypes1.ls index feb1ac6..804459e 100644 --- a/tools/testfiles/tvldtypes1.ls +++ b/tools/testfiles/tvldtypes1.ls @@ -1,11 +1,11 @@ / Group /Dataset1.0 Dataset {4} Data: - (0) (0), (10,11), (20,21,22), (30,31,32,33) + (0), (10,11), (20,21,22), (30,31,32,33) /Dataset2.0 Dataset {4} Data: - (0) (0), (10,10.1), (20,20.1,20.2), (30,30.1,30.2,30.3) + (0), (10,10.1), (20,20.1,20.2), (30,30.1,30.2,30.3) /Dataset3.0 Dataset {SCALAR} Data: - (0) (0,2,4,6,8,10,12,14,16,18,20,22,24,26,28,30,32,34,36,38,40,42,44, - (0) 46,48,50,52,54,56,58,60,62,64,66,68,70,72) + (0,2,4,6,8,10,12,14,16,18,20,22,24,26,28,30,32,34,36,38,40,42,44,46, + 48,50,52,54,56,58,60,62,64,66,68,70,72) |