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author | Allen Byrne <byrn@hdfgroup.org> | 2018-01-02 20:37:25 (GMT) |
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committer | Allen Byrne <byrn@hdfgroup.org> | 2018-01-02 20:37:25 (GMT) |
commit | d31b45766fa5bdbb7245cf5aa9444c9e6c6ca863 (patch) | |
tree | 9a13b5ed0513c16f752e2ab98ac245d6ededaf8f /tools | |
parent | 08f7c97077585f9a9c36dc9c6f976e53fafdc690 (diff) | |
parent | 17b8f0bb936633f01bf6deba247e37bcadbc6b82 (diff) | |
download | hdf5-d31b45766fa5bdbb7245cf5aa9444c9e6c6ca863.zip hdf5-d31b45766fa5bdbb7245cf5aa9444c9e6c6ca863.tar.gz hdf5-d31b45766fa5bdbb7245cf5aa9444c9e6c6ca863.tar.bz2 |
Merge pull request #840 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '17b8f0bb936633f01bf6deba247e37bcadbc6b82':
Fix valgrind issues
HDFFV-9724 init var to null
HDFFV-9724 add valgrind ENV
Fix memory leak due to addition of FORMAT check loop
HDFFV-9724 prefix of 0 length should be null value
HDFFV-9724 Corrected files and verified tests
Add library INTERFACE and MPI to tools
Diffstat (limited to 'tools')
-rw-r--r-- | tools/lib/CMakeLists.txt | 10 | ||||
-rw-r--r-- | tools/test/h5dump/CMakeTestsVDS.cmake | 70 | ||||
-rw-r--r-- | tools/test/h5ls/CMakeTestsVDS.cmake | 58 | ||||
-rw-r--r-- | tools/test/h5ls/vds_prefix/tvds-1.ls | 14 | ||||
-rw-r--r-- | tools/test/h5ls/vds_prefix/tvds-2.ls | 13 | ||||
-rw-r--r-- | tools/test/h5ls/vds_prefix/tvds-3_1.ls | 14 | ||||
-rw-r--r-- | tools/test/h5ls/vds_prefix/tvds-3_2.ls | 13 | ||||
-rw-r--r-- | tools/test/h5ls/vds_prefix/tvds-4.ls | 9 | ||||
-rw-r--r-- | tools/test/h5ls/vds_prefix/tvds-5.ls | 11 |
9 files changed, 210 insertions, 2 deletions
diff --git a/tools/lib/CMakeLists.txt b/tools/lib/CMakeLists.txt index ade7671..0fc1981 100644 --- a/tools/lib/CMakeLists.txt +++ b/tools/lib/CMakeLists.txt @@ -39,7 +39,10 @@ set (H5_TOOLS_LIB_HDRS add_library (${HDF5_TOOLS_LIB_TARGET} STATIC ${H5_TOOLS_LIB_SOURCES} ${H5_TOOLS_LIB_HDRS}) TARGET_C_PROPERTIES (${HDF5_TOOLS_LIB_TARGET} STATIC " " " ") -target_link_libraries (${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) +target_link_libraries (${HDF5_TOOLS_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET}) +if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND) + target_link_libraries (${HDF5_TOOLS_LIB_TARGET} PRIVATE ${MPI_C_LIBRARIES}) +endif () set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_TOOLS_LIB_TARGET}") H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIB_TARGET} ${HDF5_TOOLS_LIB_NAME} STATIC) set_target_properties (${HDF5_TOOLS_LIB_TARGET} PROPERTIES @@ -52,7 +55,10 @@ set (install_targets ${HDF5_TOOLS_LIB_TARGET}) if (BUILD_SHARED_LIBS) add_library (${HDF5_TOOLS_LIBSH_TARGET} SHARED ${H5_TOOLS_LIB_SOURCES} ${H5_TOOLS_LIB_HDRS}) TARGET_C_PROPERTIES (${HDF5_TOOLS_LIBSH_TARGET} SHARED " " " ") - target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) + target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} PUBLIC ${HDF5_LIBSH_TARGET}) + if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND) + target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} PRIVATE ${MPI_C_LIBRARIES}) + endif () set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_TOOLS_LIBSH_TARGET}") H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_TOOLS_LIB_NAME} SHARED ${HDF5_TOOLS_PACKAGE_SOVERSION}) set_target_properties (${HDF5_TOOLS_LIBSH_TARGET} PROPERTIES diff --git a/tools/test/h5dump/CMakeTestsVDS.cmake b/tools/test/h5dump/CMakeTestsVDS.cmake index 3addecf..922e79e 100644 --- a/tools/test/h5dump/CMakeTestsVDS.cmake +++ b/tools/test/h5dump/CMakeTestsVDS.cmake @@ -72,6 +72,14 @@ f-3.h5 vds-eiger.h5 ) + set (HDF5_REFERENCE_PREFIX_VDS + 1_vds.h5 + 2_vds.h5 + 4_vds.h5 + 5_vds.h5 + vds-percival-unlim-maxmin.h5 + vds-eiger.h5 + ) set (HDF5_ERROR_REFERENCE_VDS ) @@ -80,12 +88,21 @@ HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/vds/${vds_h5_file}" "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}" "h5dump_vds_files") endforeach () + foreach (vds_h5_file ${HDF5_REFERENCE_PREFIX_VDS}) + get_filename_component(fname "${vds_h5_file}" NAME) + HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/vds/${vds_h5_file}" "${PROJECT_BINARY_DIR}/testfiles/vds/prefix/${fname}" "h5dump_vds_files") + endforeach () foreach (ddl_vds ${HDF5_REFERENCE_VDS}) get_filename_component(fname "${ddl_vds}" NAME) HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/vds/${ddl_vds}" "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}" "h5dump_vds_files") endforeach () + foreach (ddl_vds ${HDF5_REFERENCE_VDS}) + get_filename_component(fname "${ddl_vds}" NAME) + HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/vds/${ddl_vds}" "${PROJECT_BINARY_DIR}/testfiles/vds/prefix/${fname}" "h5dump_vds_files") + endforeach () + foreach (ddl_vds ${HDF5_ERROR_REFERENCE_VDS}) get_filename_component(fname "${ddl_vds}" NAME) HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/errfiles/${ddl_vds}" "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}" "h5dump_vds_files") @@ -134,6 +151,47 @@ endif () endmacro () + macro (ADD_H5_VDS_PREFIX_TEST resultfile resultcode) + # If using memchecker add tests without using scripts + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME H5DUMP_PREFIX-${resultfile} COMMAND $<TARGET_FILE:h5dump> ${ARGN}) + set_tests_properties (H5DUMP_PREFIX-${resultfile} PROPERTIES + ENVIRONMENT "HDF5_VDS_PREFIX=${PROJECT_BINARY_DIR}/testfiles/vds/" + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds/prefix" + ) + if (NOT "${resultcode}" STREQUAL "0") + set_tests_properties (H5DUMP_PREFIX-${resultfile} PROPERTIES WILL_FAIL "true") + endif () + if (NOT "${last_vds_test}" STREQUAL "") + set_tests_properties (H5DUMP_PREFIX-${resultfile} PROPERTIES DEPENDS ${last_VDS_test}) + endif () + else () + # Remove any output file left over from previous test run + add_test ( + NAME H5DUMP_PREFIX-${resultfile}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${resultfile}.out + ${resultfile}.out.err + ) + set_tests_properties (H5DUMP_PREFIX-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds/prefix") + add_test ( + NAME H5DUMP_PREFIX-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles/vds/prefix" + -D "TEST_OUTPUT=${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${resultfile}.ddl" + -D "TEST_ENV_VAR=HDF5_VDS_PREFIX" + -D "TEST_ENV_VALUE=${PROJECT_BINARY_DIR}/testfiles/vds/" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5DUMP_PREFIX-${resultfile} PROPERTIES DEPENDS H5DUMP_PREFIX-${resultfile}-clear-objects) + endif () + endmacro () + macro (ADD_H5_VDS_LAYOUT resultfile resultcode) # If using memchecker add tests without using scripts if (HDF5_ENABLE_USING_MEMCHECKER) @@ -261,3 +319,15 @@ ADD_H5_VDS_LAYOUT (vds_layout-eiger 0 --enable-error-stack vds-eiger.h5) ADD_H5_VDS_LAYOUT (vds_layout-maxmin 0 --enable-error-stack vds-percival-unlim-maxmin.h5) endif () + + # Data read with prefix + if (USE_FILTER_DEFLATE) + ADD_H5_VDS_PREFIX_TEST (tvds-1 0 --enable-error-stack 1_vds.h5) + ADD_H5_VDS_PREFIX_TEST (tvds-2 0 --enable-error-stack 2_vds.h5) + ADD_H5_VDS_PREFIX_TEST (tvds-4 0 --enable-error-stack 4_vds.h5) + ADD_H5_VDS_PREFIX_TEST (tvds-5 0 --enable-error-stack 5_vds.h5) + ADD_H5_VDS_PREFIX_TEST (vds-first 0 --vds-view-first-missing --enable-error-stack vds-percival-unlim-maxmin.h5) + ADD_H5_VDS_PREFIX_TEST (vds-gap1 0 -d /VDS-Eiger --vds-gap-size=1 --enable-error-stack vds-eiger.h5) + ADD_H5_VDS_PREFIX_TEST (vds-gap2 0 --vds-gap-size=2 --enable-error-stack vds-eiger.h5) + endif () + diff --git a/tools/test/h5ls/CMakeTestsVDS.cmake b/tools/test/h5ls/CMakeTestsVDS.cmake index 5df61bb..2b6f61e 100644 --- a/tools/test/h5ls/CMakeTestsVDS.cmake +++ b/tools/test/h5ls/CMakeTestsVDS.cmake @@ -61,6 +61,17 @@ get_filename_component(fname "${listfiles}" NAME) HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/vds/${listfiles}" "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}" "h5ls_vds_files") endforeach () + + foreach (listfiles ${LIST_HDF5_TEST_FILES}) + get_filename_component(fname "${listfiles}" NAME) + HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/vds/${listfiles}" "${PROJECT_BINARY_DIR}/testfiles/vds/prefix/${fname}" "h5ls_vds_files") + endforeach () + + foreach (listfiles ${LIST_OTHER_TEST_FILES}) + get_filename_component(fname "${listfiles}" NAME) + HDFTEST_COPY_FILE("${HDF5_TOOLS_TEST_H5LS_SOURCE_DIR}/vds_prefix/${listfiles}" "${PROJECT_BINARY_DIR}/testfiles/vds/prefix/${fname}" "h5ls_vds_files") + endforeach () + add_custom_target(h5ls_vds_files ALL COMMENT "Copying files needed by h5ls_vds tests" DEPENDS ${h5ls_vds_files_list}) ############################################################################## @@ -104,6 +115,46 @@ endif () endmacro () + macro (ADD_H5_VDS_PREFIX_TEST resultfile resultcode) + # If using memchecker add tests without using scripts + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME H5LS_PREFIX-${resultfile} COMMAND $<TARGET_FILE:h5ls> ${ARGN}) + set_tests_properties (H5LS_PREFIX-${resultfile} PROPERTIES + ENVIRONMENT "HDF5_VDS_PREFIX=\${ORIGIN}" + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + ) + if ("${resultcode}" STREQUAL "1") + set_tests_properties (H5LS_PREFIX-${resultfile} PROPERTIES WILL_FAIL "true") + endif () + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5LS_PREFIX-${resultfile} PROPERTIES DEPENDS ${last_test}) + endif () + else () + add_test ( + NAME H5LS_PREFIX-${resultfile}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${resultfile}.out + ${resultfile}.out.err + ) + set_tests_properties (H5LS_PREFIX-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds/prefix") + add_test ( + NAME H5LS_PREFIX-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>" + -D "TEST_ARGS=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=vds/prefix/${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=vds/prefix/${resultfile}.ls" + -D "TEST_ENV_VAR=HDF5_VDS_PREFIX" + -D "TEST_ENV_VALUE=\${ORIGIN}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5LS_PREFIX-${resultfile} PROPERTIES DEPENDS H5LS_PREFIX-${resultfile}-clear-objects) + endif () + endmacro () + ############################################################################## ############################################################################## ### T H E T E S T S ### @@ -155,3 +206,10 @@ ADD_H5_VDS_TEST (tvds-4 0 -w80 -v -S 4_vds.h5) ADD_H5_VDS_TEST (tvds-5 0 -w80 -v -S 5_vds.h5) + ADD_H5_VDS_PREFIX_TEST (tvds-1 0 -w80 -v -S vds/prefix/1_vds.h5) + ADD_H5_VDS_PREFIX_TEST (tvds-2 0 -w80 -v -S vds/prefix/2_vds.h5) + ADD_H5_VDS_PREFIX_TEST (tvds-3_1 0 -w80 -v -S vds/prefix/3_1_vds.h5) + ADD_H5_VDS_PREFIX_TEST (tvds-3_2 0 -w80 -v -S vds/prefix/3_2_vds.h5) + ADD_H5_VDS_PREFIX_TEST (tvds-4 0 -w80 -v -S vds/prefix/4_vds.h5) + ADD_H5_VDS_PREFIX_TEST (tvds-5 0 -w80 -v -S vds/prefix/5_vds.h5) + diff --git a/tools/test/h5ls/vds_prefix/tvds-1.ls b/tools/test/h5ls/vds_prefix/tvds-1.ls new file mode 100644 index 0000000..2830d1a --- /dev/null +++ b/tools/test/h5ls/vds_prefix/tvds-1.ls @@ -0,0 +1,14 @@ +Opened "vds/prefix/1_vds.h5" with sec2 driver. +vds_dset Dataset {5/Inf, 18/18, 8/8} + Location: 1:800 + Links: 1 + Maps: {6} Source { + 1_a.h5 /source_dset + 1_b.h5 /source_dset + 1_c.h5 /source_dset + 1_d.h5 /source_dset + 1_e.h5 /source_dset + 1_f.h5 /source_dset + } + Storage: 2880 logical bytes, 0 allocated bytes + Type: 32-bit little-endian integer diff --git a/tools/test/h5ls/vds_prefix/tvds-2.ls b/tools/test/h5ls/vds_prefix/tvds-2.ls new file mode 100644 index 0000000..5c6f9d3 --- /dev/null +++ b/tools/test/h5ls/vds_prefix/tvds-2.ls @@ -0,0 +1,13 @@ +Opened "vds/prefix/2_vds.h5" with sec2 driver. +vds_dset Dataset {6/Inf, 8/8, 14/14} + Location: 1:800 + Links: 1 + Maps: {5} Source { + 2_a.h5 /source_dset + 2_b.h5 /source_dset + 2_c.h5 /source_dset + 2_d.h5 /source_dset + 2_e.h5 /source_dset + } + Storage: 2688 logical bytes, 0 allocated bytes + Type: 32-bit little-endian integer diff --git a/tools/test/h5ls/vds_prefix/tvds-3_1.ls b/tools/test/h5ls/vds_prefix/tvds-3_1.ls new file mode 100644 index 0000000..f4c8e78 --- /dev/null +++ b/tools/test/h5ls/vds_prefix/tvds-3_1.ls @@ -0,0 +1,14 @@ +Opened "vds/prefix/3_1_vds.h5" with sec2 driver. +vds_dset Dataset {5/Inf, 25/25, 8/8} + Location: 1:800 + Links: 1 + Maps: {6} Source { + 1_a.h5 /source_dset + 1_b.h5 /source_dset + 1_c.h5 /source_dset + 1_d.h5 /source_dset + 1_e.h5 /source_dset + 1_f.h5 /source_dset + } + Storage: 4000 logical bytes, 0 allocated bytes + Type: 32-bit little-endian integer diff --git a/tools/test/h5ls/vds_prefix/tvds-3_2.ls b/tools/test/h5ls/vds_prefix/tvds-3_2.ls new file mode 100644 index 0000000..5a7e2d8 --- /dev/null +++ b/tools/test/h5ls/vds_prefix/tvds-3_2.ls @@ -0,0 +1,13 @@ +Opened "vds/prefix/3_2_vds.h5" with sec2 driver. +vds_dset Dataset {6/Inf, 13/13, 19/19} + Location: 1:800 + Links: 1 + Maps: {5} Source { + 2_a.h5 /source_dset + 2_b.h5 /source_dset + 2_c.h5 /source_dset + 2_d.h5 /source_dset + 2_e.h5 /source_dset + } + Storage: 5928 logical bytes, 0 allocated bytes + Type: 32-bit little-endian integer diff --git a/tools/test/h5ls/vds_prefix/tvds-4.ls b/tools/test/h5ls/vds_prefix/tvds-4.ls new file mode 100644 index 0000000..c22d3a4 --- /dev/null +++ b/tools/test/h5ls/vds_prefix/tvds-4.ls @@ -0,0 +1,9 @@ +Opened "vds/prefix/4_vds.h5" with sec2 driver. +vds_dset Dataset {9/Inf, 4/4, 4/4} + Location: 1:800 + Links: 1 + Maps: {1} Source { + 4_%b.h5 /source_dset + } + Storage: 576 logical bytes, 0 allocated bytes + Type: 32-bit little-endian integer diff --git a/tools/test/h5ls/vds_prefix/tvds-5.ls b/tools/test/h5ls/vds_prefix/tvds-5.ls new file mode 100644 index 0000000..efba8dc --- /dev/null +++ b/tools/test/h5ls/vds_prefix/tvds-5.ls @@ -0,0 +1,11 @@ +Opened "vds/prefix/5_vds.h5" with sec2 driver. +vds_dset Dataset {9/Inf, 4/4, 4/4} + Location: 1:800 + Links: 1 + Maps: {3} Source { + 5_a.h5 /source_dset + 5_b.h5 /source_dset + 5_c.h5 /source_dset + } + Storage: 576 logical bytes, 0 allocated bytes + Type: 32-bit little-endian integer |