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| author | Raymond Lu <songyulu@hdfgroup.org> | 2013-03-13 22:34:23 (GMT) |
|---|---|---|
| committer | Raymond Lu <songyulu@hdfgroup.org> | 2013-03-13 22:34:23 (GMT) |
| commit | 08359be858ae9e4595dab1f4a7718017d9af7663 (patch) | |
| tree | bbe033fd134cfda5943dff96ef2a7f5f10d743e9 /tools | |
| parent | 55822485c64197a6c2c4a623824fcdcd10a57d31 (diff) | |
| download | hdf5-08359be858ae9e4595dab1f4a7718017d9af7663.zip hdf5-08359be858ae9e4595dab1f4a7718017d9af7663.tar.gz hdf5-08359be858ae9e4595dab1f4a7718017d9af7663.tar.bz2 | |
[svn-r23347] ported revision 23248:23346 from the trunk
Diffstat (limited to 'tools')
44 files changed, 1976 insertions, 1634 deletions
diff --git a/tools/Makefile.in b/tools/Makefile.in index 70e11ae..46c7d53 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -228,6 +228,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -279,7 +280,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt index 970cc12..7f68e76 100644 --- a/tools/h5copy/CMakeLists.txt +++ b/tools/h5copy/CMakeLists.txt @@ -44,9 +44,6 @@ IF (BUILD_TESTING) SET (LIST_OTHER_TEST_FILES ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_misc1.out - ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_extlinks_src.out.ls - ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_ref.out.ls - ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copytst.out.ls ) FILE (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") @@ -62,20 +59,6 @@ IF (BUILD_TESTING) ARGS -E copy_if_different ${listfiles} ${dest} ) ENDFOREACH (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES}) - - # - # This section can be removed, but leave here for a reference later. - # Purpose: '-l3' ignores top 3 lines when copy text file. - # - #FOREACH (listfiles ${LIST_OTHER_TEST_FILES}) - # SET (lsdest "${PROJECT_BINARY_DIR}/testfiles/${listfiles}") - # ADD_CUSTOM_COMMAND ( - # TARGET h5copy - # POST_BUILD - # COMMAND ${XLATE_UTILITY} - # ARGS ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/${listfiles} ${lsdest} -l3 - # ) - #ENDFOREACH (listfiles ${LIST_OTHER_TEST_FILES}) ############################################################################## ############################################################################## @@ -86,89 +69,189 @@ IF (BUILD_TESTING) # # Perform h5copy according to passing parmeters # - MACRO (ADD_H5_F_TEST testname resultcode infile outfile fparam vparam sparam srcname dparam dstname) + MACRO (ADD_H5_F_TEST testname resultcode infile fparam vparam sparam srcname dparam dstname) + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5COPY_F-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ./testfiles/${testname}.out.h5 + ) + ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST ( NAME H5COPY_F-${testname} - COMMAND $<TARGET_FILE:h5copy> -f ${fparam} -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN} + COMMAND $<TARGET_FILE:h5copy> -f ${fparam} -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN} ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5COPY_F-${testname} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5COPY_F-${testname}") - ADD_H5_DIFF_TEST (${testname} ${resultcode} ${last_test} ${infile} ${outfile} ${srcname} ${dstname}) + IF (HDF5_ENABLE_USING_MEMCHECKER) + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5COPY_F-${testname} PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + ELSE (HDF5_ENABLE_USING_MEMCHECKER) + SET_TESTS_PROPERTIES (H5COPY_F-${testname} PROPERTIES DEPENDS H5COPY_F-${testname}-clear-objects) + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) + + # resultcode=2 will cause the test to skip the diff test + IF (NOT ${resultcode} STREQUAL "2") + ADD_TEST ( + NAME H5COPY_F-${testname}-DIFF + COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${testname}.out.h5 ${srcname} ${dstname} + ) + SET_TESTS_PROPERTIES(H5COPY_F-${testname}-DIFF PROPERTIES DEPENDS H5COPY_F-${testname}) + IF (${resultcode} STREQUAL "1") + SET_TESTS_PROPERTIES (H5COPY_F-${testname}-DIFF PROPERTIES WILL_FAIL "true") + ENDIF (${resultcode} STREQUAL "1") + ENDIF (NOT ${resultcode} STREQUAL "2") ENDMACRO (ADD_H5_F_TEST) - MACRO (ADD_H5_TEST testname resultcode infile outfile vparam sparam srcname dparam dstname) + MACRO (ADD_H5_TEST testname resultcode infile vparam sparam srcname dparam dstname) + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5COPY-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ./testfiles/${testname}.out.h5 + ) + ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST ( NAME H5COPY-${testname} - COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN} + COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN} ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5COPY-${testname} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5COPY-${testname}") - ADD_H5_DIFF_TEST (${testname} ${resultcode} ${last_test} ${infile} ${outfile} ${srcname} ${dstname}) + IF (HDF5_ENABLE_USING_MEMCHECKER) + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5COPY-${testname} PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + ELSE (HDF5_ENABLE_USING_MEMCHECKER) + SET_TESTS_PROPERTIES (H5COPY-${testname} PROPERTIES DEPENDS H5COPY-${testname}-clear-objects) + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) + + # resultcode=2 will cause the test to skip the diff test + IF (NOT ${resultcode} STREQUAL "2") + ADD_TEST ( + NAME H5COPY-${testname}-DIFF + COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${testname}.out.h5 ${srcname} ${dstname} + ) + SET_TESTS_PROPERTIES(H5COPY-${testname}-DIFF PROPERTIES DEPENDS H5COPY-${testname}) + IF (${resultcode} STREQUAL "1") + SET_TESTS_PROPERTIES (H5COPY-${testname}-DIFF PROPERTIES WILL_FAIL "true") + ENDIF (${resultcode} STREQUAL "1") + ENDIF (NOT ${resultcode} STREQUAL "2") ENDMACRO (ADD_H5_TEST) - MACRO (ADD_H5_DIFF_TEST testname resultcode testdepends infile outfile srcname dstname) + MACRO (ADD_H5_TEST2 testname resultcode infile psparam pdparam vparam sparam srcname dparam dstname) + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5COPY-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ./testfiles/${testname}.out.h5 + ) + ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) + + ADD_TEST ( + NAME H5COPY-${testname}-prefill + COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 -v -s ${psparam} -d ${pdparam} + ) + IF (HDF5_ENABLE_USING_MEMCHECKER) + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5COPY-${testname}-prefill PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + ELSE (HDF5_ENABLE_USING_MEMCHECKER) + SET_TESTS_PROPERTIES (H5COPY-${testname}-prefill PROPERTIES DEPENDS H5COPY-${testname}-clear-objects) + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) + + ADD_TEST ( + NAME H5COPY-${testname} + COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN} + ) + SET_TESTS_PROPERTIES (H5COPY-${testname} PROPERTIES DEPENDS H5COPY-${testname}-prefill) # resultcode=2 will cause the test to skip the diff test IF (NOT ${resultcode} STREQUAL "2") ADD_TEST ( - NAME H5COPY-DIFF_${testname} - COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${outfile} ${srcname} ${dstname} + NAME H5COPY-${testname}-DIFF + COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${testname}.out.h5 ${srcname} ${dstname} ) - SET_TESTS_PROPERTIES(H5COPY-DIFF_${testname} PROPERTIES DEPENDS ${testdepends}) - SET (last_test "H5COPY-DIFF_${testname}") + SET_TESTS_PROPERTIES(H5COPY-${testname}-DIFF PROPERTIES DEPENDS H5COPY-${testname}) IF (${resultcode} STREQUAL "1") - SET_TESTS_PROPERTIES (H5COPY-DIFF_${testname} PROPERTIES WILL_FAIL "true") + SET_TESTS_PROPERTIES (H5COPY-${testname}-DIFF PROPERTIES WILL_FAIL "true") ENDIF (${resultcode} STREQUAL "1") ENDIF (NOT ${resultcode} STREQUAL "2") - ENDMACRO (ADD_H5_DIFF_TEST) + ENDMACRO (ADD_H5_TEST2) + + MACRO (ADD_H5_TEST_SAME testname resultcode pfile psparam pdparam vparam sparam srcname dparam dstname) + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5COPY_SAME-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ./testfiles/${testname}.out.h5 + ) + ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) - # - # Test result with h5ls - # - MACRO (ADD_H5LS_TEST file filetest) - # If using memchecker add tests without using scripts + ADD_TEST ( + NAME H5COPY_SAME-${testname}-prefill + COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${pfile} -o ./testfiles/${testname}.out.h5 -v -s ${psparam} -d ${pdparam} + ) IF (HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST (NAME H5COPY-h5ls_${file}-${filetest} COMMAND $<TARGET_FILE:h5ls> -Svr ./testfiles/${file}.out.h5) + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5COPY_SAME-${testname}-prefill PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") ELSE (HDF5_ENABLE_USING_MEMCHECKER) + SET_TESTS_PROPERTIES (H5COPY_SAME-${testname}-prefill PROPERTIES DEPENDS H5COPY_SAME-${testname}-clear-objects) + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) + + ADD_TEST ( + NAME H5COPY_SAME-${testname} + COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${testname}.out.h5 -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN} + ) + SET_TESTS_PROPERTIES (H5COPY_SAME-${testname} PROPERTIES DEPENDS H5COPY_SAME-${testname}-prefill) + # resultcode=2 will cause the test to skip the diff test + IF (NOT ${resultcode} STREQUAL "2") ADD_TEST ( - NAME H5COPY-h5ls_${file}-${filetest} - COMMAND "${CMAKE_COMMAND}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>" - -D "TEST_ARGS=-Svr;./testfiles/${file}.out.h5" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_OUTPUT=./testfiles/${file}.out.out" - -D "TEST_EXPECT=0" - -D "TEST_REFERENCE=./testfiles/${file}.out.ls" - -D "TEST_MASK=true" - -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + NAME H5COPY_SAME-${testname}-DIFF + COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${testname}.out.h5 ./testfiles/${testname}.out.h5 ${srcname} ${dstname} ) - ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5COPY-h5ls_${file}-${filetest} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5COPY-h5ls_${file}-${filetest}") - ENDMACRO (ADD_H5LS_TEST) + SET_TESTS_PROPERTIES(H5COPY_SAME-${testname}-DIFF PROPERTIES DEPENDS H5COPY_SAME-${testname}) + IF (${resultcode} STREQUAL "1") + SET_TESTS_PROPERTIES (H5COPY_SAME-${testname}-DIFF PROPERTIES WILL_FAIL "true") + ENDIF (${resultcode} STREQUAL "1") + ENDIF (NOT ${resultcode} STREQUAL "2") + ENDMACRO (ADD_H5_TEST_SAME) # # Similiar to ADD_H5_TEST macro. Compare to outputs from source & target # files instead of checking with h5ls. # - MACRO (ADD_H5_CMP_TEST testname resultcode infile outfile vparam sparam srcname dparam dstname) + MACRO (ADD_H5_CMP_TEST testname resultcode infile vparam sparam srcname dparam dstname) # If using memchecker add tests without using scripts IF (HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST (NAME H5COPY-CMP-${testname} COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}) + ADD_TEST (NAME H5COPY-CMP-${testname} COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}) IF (${resultcode} STREQUAL "1") SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES WILL_FAIL "true") ENDIF (${resultcode} STREQUAL "1") + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") ELSE (HDF5_ENABLE_USING_MEMCHECKER) + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5COPY-CMP-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ./testfiles/${testname}.out.h5 + ./testfiles/${testname}.out.out + ./testfiles/${testname}.out.out.err + ) ADD_TEST ( NAME H5COPY-CMP-${testname} COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5copy>" - -D "TEST_ARGS=-i;./testfiles/${infile};-o;./testfiles/${outfile};${vparam};${sparam};${srcname};${dparam};${dstname}" + -D "TEST_ARGS=-i;./testfiles/${infile};-o;./testfiles/${testname}.out.h5;${vparam};${sparam};${srcname};${dparam};${dstname}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" -D "TEST_OUTPUT=./testfiles/${testname}.out.out" -D "TEST_EXPECT=${resultcode}" @@ -176,11 +259,8 @@ IF (BUILD_TESTING) -D "TEST_MASK=true" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) + SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES DEPENDS H5COPY-CMP-${testname}-clear-objects) ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5COPY-CMP-${testname}") ENDMACRO (ADD_H5_CMP_TEST) ############################################################################## @@ -197,172 +277,135 @@ IF (BUILD_TESTING) SET (HDF_EXT_SRC_FILE h5copy_extlinks_src) SET (HDF_EXT_TRG_FILE h5copy_extlinks_trg) - # Remove any output file left over from previous test run - ADD_TEST ( - NAME H5COPY-clearall-objects - COMMAND ${CMAKE_COMMAND} - -E remove - ./testfiles/${HDF_FILE1}.out.h5 - ./testfiles/${HDF_FILE1}.out.out - ./testfiles/${HDF_FILE1}.out.out.err - ./testfiles/${HDF_FILE2}.out.h5 - ./testfiles/${HDF_FILE2}.out.out - ./testfiles/${HDF_FILE2}.out.out.err - ./testfiles/${HDF_EXT_SRC_FILE}.out.h5 - ./testfiles/${HDF_EXT_SRC_FILE}.out.out - ./testfiles/${HDF_EXT_SRC_FILE}.out.out.err - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5COPY-clearall-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5COPY-clearall-objects") + IF (HDF5_ENABLE_USING_MEMCHECKER) + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5COPY-clearall-objects + COMMAND ${CMAKE_COMMAND} + -E remove + simple.out.h5 + chunk.out.h5 + compact.out.h5 + compound.out.h5 + compressed.out.h5 + named_vl.out.h5 + nested_vl.out.h5 + simple_top.out.h5 + dsrename.out.h5 + grp_empty.out.h5 + grp_dsets.out.h5 + grp_nested.out.h5 + simple_group.out.h5 + grp_rename.out.h5 + grp_dsets_rename.out.h5 + A_B1_simple.out.h5 + A_B2_simple2.out.h5 + C_D_simple.out.h5 + E_F_grp_dsets.out.h5 + G_H_grp_nested.out.h5 + region_ref.out.h5 + ext_link.out.h5 + ext_link_f.out.h5 + ext_dangle_noobj.out.h5 + ext_dangle_noobj_f.out.h5 + ext_dangle_nofile.out.h5 + ext_dangle_nofile_f.out.h5 + ext_link_group.out.h5 + ext_link_group_f.out.h5 + samefile1.out.h5 + samefile2.out.h5 + h5copy_misc1.out.h5 + h5copy_misc1.out.out + h5copy_misc1.out.out.err + ) + SET_TESTS_PROPERTIES (H5COPY-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5COPY-clearall-objects PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + SET (last_test "H5COPY-clearall-objects") + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) # "Test copying various forms of datasets" - ADD_H5_TEST (simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s simple -d simple) - ADD_H5_TEST (chunk 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s chunk -d chunk) - ADD_H5_TEST (compact 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compact -d compact) - ADD_H5_TEST (compound 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compound -d compound) - ADD_H5_TEST (compressed 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compressed -d compressed) - ADD_H5_TEST (named_vl 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s named_vl -d named_vl) - ADD_H5_TEST (nested_vl 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s nested_vl -d nested_vl) + ADD_H5_TEST (simple 0 ${HDF_FILE1}.h5 -v -s simple -d simple) + ADD_H5_TEST (chunk 0 ${HDF_FILE1}.h5 -v -s chunk -d chunk) + ADD_H5_TEST (compact 0 ${HDF_FILE1}.h5 -v -s compact -d compact) + ADD_H5_TEST (compound 0 ${HDF_FILE1}.h5 -v -s compound -d compound) + ADD_H5_TEST (compressed 0 ${HDF_FILE1}.h5 -v -s compressed -d compressed) + ADD_H5_TEST (named_vl 0 ${HDF_FILE1}.h5 -v -s named_vl -d named_vl) + ADD_H5_TEST (nested_vl 0 ${HDF_FILE1}.h5 -v -s nested_vl -d nested_vl) # "Test copying dataset within group in source file to root of destination" - ADD_H5_TEST (simple_top 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets/simple -d simple_top) + ADD_H5_TEST (simple_top 0 ${HDF_FILE1}.h5 -v -s grp_dsets/simple -d simple_top) # "Test copying & renaming dataset" - ADD_H5_TEST (rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compound -d rename) + ADD_H5_TEST (dsrename 0 ${HDF_FILE1}.h5 -v -s compound -d rename) # "Test copying empty, 'full' & 'nested' groups" - ADD_H5_TEST (grp_empty 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_empty -d grp_empty) - ADD_H5_TEST (grp_dsets 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d grp_dsets) - ADD_H5_TEST (grp_nested 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_nested -d grp_nested) + ADD_H5_TEST (grp_empty 0 ${HDF_FILE1}.h5 -v -s grp_empty -d grp_empty) + ADD_H5_TEST (grp_dsets 0 ${HDF_FILE1}.h5 -v -s grp_dsets -d grp_dsets) + ADD_H5_TEST (grp_nested 0 ${HDF_FILE1}.h5 -v -s grp_nested -d grp_nested) # "Test copying dataset within group in source file to group in destination" - ADD_H5_TEST (simple_group 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets/simple -d /grp_dsets/simple_group) + ADD_H5_TEST2 (simple_group 0 ${HDF_FILE1}.h5 grp_dsets grp_dsets -v -s /grp_dsets/simple -d /grp_dsets/simple_group) # "Test copying & renaming group" - ADD_H5_TEST (grp_rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d grp_rename) + ADD_H5_TEST (grp_rename 0 ${HDF_FILE1}.h5 -v -s grp_dsets -d grp_rename) # "Test copying 'full' group hierarchy into group in destination file" - ADD_H5_TEST (grp_dsets_rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d /grp_rename/grp_dsets) + ADD_H5_TEST2 (grp_dsets_rename 0 ${HDF_FILE1}.h5 grp_dsets grp_rename -v -s grp_dsets -d /grp_rename/grp_dsets) # "Test copying objects into group hier. that doesn't exist yet in destination file" - ADD_H5_TEST (A_B1_simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s simple -d /A/B1/simple) - ADD_H5_TEST (A_B2_simple2 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s simple -d /A/B2/simple2) - ADD_H5_TEST (C_D_simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_dsets/simple -d /C/D/simple) - ADD_H5_TEST (E_F_grp_dsets 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_dsets -d /E/F/grp_dsets) - ADD_H5_TEST (G_H_grp_nested 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_nested -d /G/H/grp_nested) - - # Verify that the file created above is correct - ADD_H5LS_TEST (${HDF_FILE1} basic) + ADD_H5_TEST (A_B1_simple 0 ${HDF_FILE1}.h5 -vp -s simple -d /A/B1/simple) + ADD_H5_TEST (A_B2_simple2 0 ${HDF_FILE1}.h5 -vp -s simple -d /A/B2/simple2) + ADD_H5_TEST (C_D_simple 0 ${HDF_FILE1}.h5 -vp -s /grp_dsets/simple -d /C/D/simple) + ADD_H5_TEST (E_F_grp_dsets 0 ${HDF_FILE1}.h5 -vp -s /grp_dsets -d /E/F/grp_dsets) + ADD_H5_TEST (G_H_grp_nested 0 ${HDF_FILE1}.h5 -vp -s /grp_nested -d /G/H/grp_nested) ############# COPY REFERENCES ############## - # Remove any output file left over from previous test run - ADD_TEST ( - NAME H5COPY-clear-refs - COMMAND ${CMAKE_COMMAND} - -E remove - ./testfiles/${HDF_FILE2}.out.h5 - ./testfiles/${HDF_FILE2}.out.out - ./testfiles/${HDF_FILE2}.out.out.err - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5COPY-clear-refs PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5COPY-clear-refs") - # "Test copying object and region references" - ADD_H5_F_TEST (region_ref 2 ${HDF_FILE2}.h5 ${HDF_FILE2}.out.h5 ref -v -s / -d /COPY) - - # Verify that the file created above is correct - ADD_H5LS_TEST (${HDF_FILE2} refs) + ADD_H5_F_TEST (region_ref 2 ${HDF_FILE2}.h5 ref -v -s / -d /COPY) ############# COPY EXT LINKS ############## - # Remove any output file left over from previous test run - ADD_TEST ( - NAME H5COPY-clear-ext-links - COMMAND ${CMAKE_COMMAND} - -E remove - ./testfiles/${HDF_EXT_SRC_FILE}.out.h5 - ./testfiles/${HDF_EXT_SRC_FILE}.out.out - ./testfiles/${HDF_EXT_SRC_FILE}.out.out.err - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5COPY-clear-ext-links PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5COPY-clear-ext-links") - # "Test copying external link directly without -f ext" - ADD_H5_TEST (ext_link 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_dset -d /copy1_dset) + ADD_H5_TEST (ext_link 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext/extlink_dset -d /copy1_dset) # "Test copying external link directly with -f ext" - ADD_H5_F_TEST (ext_link_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_dset -d /copy2_dset) + ADD_H5_F_TEST (ext_link_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext/extlink_dset -d /copy2_dset) # "Test copying dangling external link (no obj) directly without -f ext" - ADD_H5_TEST (ext_dangle_noobj 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_1) + ADD_H5_TEST (ext_dangle_noobj 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_1) # "Test copying dangling external link (no obj) directly with -f ext" - ADD_H5_F_TEST (ext_dangle_noobj_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2) + ADD_H5_F_TEST (ext_dangle_noobj_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2) # "Test copying dangling external link (no file) directly without -f ext" - ADD_H5_TEST (ext_dangle_nofile 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_1) + ADD_H5_TEST (ext_dangle_nofile 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_1) # "Test copying dangling external link (no file) directly with -f ext" - ADD_H5_F_TEST (ext_dangle_nofile_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2) + ADD_H5_F_TEST (ext_dangle_nofile_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2) # "Test copying a group contains external links without -f ext" - ADD_H5_TEST (ext_link_group 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext -d /copy1_group) + ADD_H5_TEST (ext_link_group 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext -d /copy1_group) # "Test copying a group contains external links with -f ext" - ADD_H5_F_TEST (ext_link_group_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext -d /copy2_group) - - # Verify that the file created above is correct - ADD_H5LS_TEST (${HDF_EXT_SRC_FILE} links) + ADD_H5_F_TEST (ext_link_group_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext -d /copy2_group) ############# Test misc. ############## - # Remove any output file left over from previous test run - ADD_TEST ( - NAME H5COPY-clear-misc - COMMAND ${CMAKE_COMMAND} - -E remove - ./testfiles/h5copy_misc1.out.out - ./testfiles/h5copy_misc1.out.out.err - ./testfiles/${HDF_FILE1}.out.h5 - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5COPY-clear-misc PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5COPY-clear-misc") #----------------------------------------------------------------- # "Test copying object into group which doesn't exist, without -p" # - ADD_H5_CMP_TEST (h5copy_misc1 1 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /g1/g2/simple) - # Remove any output file left over from previous test run - ADD_TEST ( - NAME H5COPY-clear-samefile - COMMAND ${CMAKE_COMMAND} - -E remove - ./testfiles/${HDF_FILE1}.out.h5 - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5COPY-clear-samefile PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5COPY-clear-samefile") + ADD_H5_CMP_TEST (h5copy_misc1 1 ${HDF_FILE1}.h5 -v -s /simple -d /g1/g2/simple) #------------------------------------------- # "Test copying objects to the same file " # - # create temporary test file with some objects - ADD_H5_TEST (samefile1_pre 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /simple) - ADD_H5_TEST (samefile2_pre 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets -d /grp_dsets) - # actual test cases # - dataset - ADD_H5_TEST (samefile1 0 ${HDF_FILE1}.out.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /simple_cp) + ADD_H5_TEST_SAME (samefile1 0 ${HDF_FILE1}.h5 /simple /simple -v -s /simple -d /simple_cp) # - group with some datasets - ADD_H5_TEST (samefile2 0 ${HDF_FILE1}.out.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets -d /grp_dsets_cp) + ADD_H5_TEST_SAME (samefile2 0 ${HDF_FILE1}.h5 /grp_dsets /grp_dsets -v -s /grp_dsets -d /grp_dsets_cp) ENDIF (BUILD_TESTING) ############################################################################## diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in index da9d0b7..3278f80 100644 --- a/tools/h5copy/Makefile.in +++ b/tools/h5copy/Makefile.in @@ -234,6 +234,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -285,7 +286,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/h5copy/testfiles/h5copy_misc1.out b/tools/h5copy/testfiles/h5copy_misc1.out index 10dd1a6..1624f2b 100644 --- a/tools/h5copy/testfiles/h5copy_misc1.out +++ b/tools/h5copy/testfiles/h5copy_misc1.out @@ -1,3 +1,3 @@ -Copying file <./testfiles/h5copytst.h5> and object </simple> to file <./testfiles/h5copytst.out.h5> and object </g1/g2/simple> +Copying file <./testfiles/h5copytst.h5> and object </simple> to file <./testfiles/h5copy_misc1.out.h5> and object </g1/g2/simple> Error in copy...Exiting h5copy error: group </g1> doesn't exist. Use -p to create parent groups. diff --git a/tools/h5copy/testh5copy.sh.in b/tools/h5copy/testh5copy.sh.in index c7acd9a..d30d8d8 100644 --- a/tools/h5copy/testh5copy.sh.in +++ b/tools/h5copy/testh5copy.sh.in @@ -57,9 +57,6 @@ $SRC_H5COPY_TESTFILES/h5copy_extlinks_trg.h5 # List of expect files that will be copied over to local test dir LIST_OTHER_TEST_FILES=" -$SRC_H5COPY_TESTFILES/h5copy_extlinks_src.out.ls -$SRC_H5COPY_TESTFILES/h5copy_ref.out.ls -$SRC_H5COPY_TESTFILES/h5copytst.out.ls $SRC_H5COPY_TESTFILES/h5copy_misc1.out " @@ -151,15 +148,6 @@ VERIFY() # Print a line-line message left justified in a field of 70 characters # beginning with the word "Verifying". # -VERIFY_H5LS() -{ - SPACES=" " - echo "Verifying h5ls file structure $* $SPACES" | cut -c1-70 | tr -d '\012' -} - -# Print a line-line message left justified in a field of 70 characters -# beginning with the word "Verifying". -# VERIFY_OUTPUT() { SPACES=" " @@ -183,24 +171,34 @@ TOOLTEST() { actualout="$TESTDIR/tooltest.actualout" actualerr="$TESTDIR/tooltest.actualerr" - runh5diff=yes - if [ "$1" = -i ]; then - inputfile=$2 - else - runh5diff=no - fi - if [ "$3" = -o ]; then - outputfile=$4 - else - runh5diff=no - fi + runh5diff=yes + if [ "$1" = -i ]; then + inputfile=$2 + else + if [ "$1" = -f ]; then + inputfile=$4 + else + inputfile=$3 + fi + runh5diff=no + fi + if [ "$3" = -o ]; then + outputfile=$4 + else + if [ "$1" = -f ]; then + outputfile=$6 + else + outputfile=$5 + fi + runh5diff=no + fi TESTING $H5COPY $@ ( - echo "#############################" - echo " output for '$H5COPY $@'" - echo "#############################" - $RUNSERIAL $H5COPY_BIN $@ + echo "#############################" + echo " output for '$H5COPY $@'" + echo "#############################" + $RUNSERIAL $H5COPY_BIN $@ ) > $actualout 2> $actualerr RET=$? if [ $RET != 0 ]; then @@ -210,15 +208,141 @@ TOOLTEST() nerrors="`expr $nerrors + 1`" else echo " PASSED" + + if [ $runh5diff != no ]; then + H5DIFFTEST $inputfile $outputfile $7 $9 + fi # Clean up output file if test -z "$HDF5_NOCLEANUP"; then - rm -f $actualout $actualerr + rm -f $actualout $actualerr $outputfile + fi + fi +} + +# TOOLTEST back-to-back +TOOLTEST_PREFILL() +{ + actualout="$TESTDIR/tooltest.actualout" + actualerr="$TESTDIR/tooltest.actualerr" + runh5diff=yes + if [ "$1" = -i ]; then + inputfile=$2 + else + runh5diff=no + fi + if [ "$3" = -o ]; then + outputfile=$4 + else + runh5diff=no + fi + + grp_name=$5 + grp_name2=$6 + obj_name=$7 + obj_name2=$8 + + TESTING $H5COPY $@ + ( + echo "#############################" + echo " output for '$H5COPY $@'" + echo "#############################" + $RUNSERIAL $H5COPY_BIN -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name2 + ) > $actualout 2> $actualerr + RET=$? + if [ $RET != 0 ]; then + echo "*FAILED*" + echo "failed result is:" + cat $actualout + nerrors="`expr $nerrors + 1`" + else + TESTING $H5COPY $@ + ( + echo "#############################" + echo " output for '$H5COPY $@'" + echo "#############################" + $RUNSERIAL $H5COPY_BIN -i $inputfile -o $outputfile -v -s $obj_name -d $obj_name2 + ) > $actualout 2> $actualerr + RET=$? + if [ $RET != 0 ]; then + echo "*FAILED*" + echo "failed result is:" + cat $actualout + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + + if [ $runh5diff != no ]; then + H5DIFFTEST $inputfile $outputfile $obj_name $obj_name2 + fi + + # Clean up output file + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actualout $actualerr $outputfile + fi fi fi +} + +# TOOLTEST back-to-back +TOOLTEST_SAME() +{ + actualout="$TESTDIR/tooltest.actualout" + actualerr="$TESTDIR/tooltest.actualerr" + runh5diff=yes + if [ "$1" = -i ]; then + inputfile=$2 + else + runh5diff=no + fi + if [ "$3" = -o ]; then + outputfile=$4 + else + runh5diff=no + fi - if [ $runh5diff != no ]; then - H5DIFFTEST $inputfile $outputfile $7 $9 + grp_name=$5 + grp_name2=$6 + + TESTING $H5COPY $@ + ( + echo "#############################" + echo " output for '$H5COPY $@'" + echo "#############################" + $RUNSERIAL $H5COPY_BIN -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name + ) > $actualout 2> $actualerr + RET=$? + if [ $RET != 0 ]; then + echo "*FAILED*" + echo "failed result is:" + cat $actualout + nerrors="`expr $nerrors + 1`" + else + TESTING $H5COPY $@ + ( + echo "#############################" + echo " output for '$H5COPY $@'" + echo "#############################" + $RUNSERIAL $H5COPY_BIN -i $outputfile -o $outputfile -v -s $grp_name -d $grp_name2 + ) > $actualout 2> $actualerr + RET=$? + if [ $RET != 0 ]; then + echo "*FAILED*" + echo "failed result is:" + cat $actualout + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + + if [ $runh5diff != no ]; then + H5DIFFTEST $outputfile $outputfile $grp_name $grp_name2 + fi + + # Clean up output file + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actualout $actualerr $outputfile + fi + fi fi } @@ -259,18 +383,18 @@ TOOLTEST_FAIL() actualerr_sav=${actualerr}-sav shift if [ "$1" = -i ]; then - inputfile=$2 + inputfile=$2 fi if [ "$3" = -o ]; then - outputfile=$4 + outputfile=$4 fi TESTING $H5COPY $@ ( - #echo "#############################" - #echo " output for '$H5COPY $@'" - #echo "#############################" - $RUNSERIAL $H5COPY_BIN $@ + #echo "#############################" + #echo " output for '$H5COPY $@'" + #echo "#############################" + $RUNSERIAL $H5COPY_BIN $@ ) > $actualout 2> $actualerr RET=$? @@ -298,7 +422,7 @@ TOOLTEST_FAIL() # Clean up output file if test -z "$HDF5_NOCLEANUP"; then - rm -f $actualout $actualerr $actualout_sav $actualerr_sav + rm -f $actualout $actualerr $actualout_sav $actualerr_sav $outputfile fi } @@ -311,10 +435,10 @@ H5DIFFTEST() $RUNSERIAL $H5DIFF_BIN -q "$@" RET=$? if [ $RET != 0 ] ; then - echo "*FAILED*" - nerrors="`expr $nerrors + 1`" + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" else - echo " PASSED" + echo " PASSED" fi } @@ -327,50 +451,13 @@ H5DIFFTEST_FAIL() RET=$? if [ $h5haveexitcode = 'yes' -a $RET != 1 ] ; then - echo "*FAILED*" - nerrors="`expr $nerrors + 1`" + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" else - echo " PASSED" + echo " PASSED" fi } -# Call the h5ls tool to verify the correct output data in the destination file -# -H5LSTEST() -{ - expect="$TESTDIR/`basename $1 .h5`.ls" - actual="$TESTDIR/`basename $1 .h5`.ls.actualout" - - # Stderr is included in stdout so that the diff can detect - # any unexpected output from that stream too. - # - # Note: The modification time and storage utilization are masked off - # so that the output is more portable - VERIFY_H5LS $@ - ( - $RUNSERIAL $H5LS_BIN $H5LS_ARGS $@ - ) 2>&1 |sed 's/Modified:.*/Modified: XXXX-XX-XX XX:XX:XX XXX/' |sed 's/Storage:.*/Storage: <details removed for portability>/' >$actual - - - if [ ! -f $expect ]; then - # Create the expect file if it doesn't yet exist. - echo " CREATED" - cp $actual $expect - elif $CMP $expect $actual; then - echo " PASSED" - else - echo "*FAILED*" - echo " Expected result (*.ls) differs from actual result (*.out)" - nerrors="`expr $nerrors + 1`" - test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /' - fi - - # Clean up output file - if test -z "$HDF5_NOCLEANUP"; then - rm -f $actual $actual_err - fi -} - # Copy single datasets of various forms from one group to another, # adding object copied to the destination file each time # @@ -379,82 +466,54 @@ H5LSTEST() COPY_OBJECTS() { TESTFILE="$TESTDIR/h5copytst.h5" - FILEOUT="$TESTDIR/`basename h5copytst.h5 .h5`.out.h5" - - # Remove any output file left over from previous test run - rm -f $FILEOUT - echo "Testing from `basename $TESTFILE` to `basename $FILEOUT` for the following tests:" echo "Test copying various forms of datasets" - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s simple -d simple - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s chunk -d chunk - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compact -d compact - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compound -d compound - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compressed -d compressed - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s named_vl -d named_vl - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s nested_vl -d nested_vl + TOOLTEST -i $TESTFILE -o $TESTDIR/simple.out.h5 -v -s simple -d simple + TOOLTEST -i $TESTFILE -o $TESTDIR/chunk.out.h5 -v -s chunk -d chunk + TOOLTEST -i $TESTFILE -o $TESTDIR/compact.out.h5 -v -s compact -d compact + TOOLTEST -i $TESTFILE -o $TESTDIR/compound.out.h5 -v -s compound -d compound + TOOLTEST -i $TESTFILE -o $TESTDIR/compressed.out.h5 -v -s compressed -d compressed + TOOLTEST -i $TESTFILE -o $TESTDIR/named_vl.out.h5 -v -s named_vl -d named_vl + TOOLTEST -i $TESTFILE -o $TESTDIR/nested_vl.out.h5 -v -s nested_vl -d nested_vl echo "Test copying dataset within group in source file to root of destination" - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets/simple -d simple_top + TOOLTEST -i $TESTFILE -o $TESTDIR/simple_top.out.h5 -v -s grp_dsets/simple -d simple_top echo "Test copying & renaming dataset" - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compound -d rename + TOOLTEST -i $TESTFILE -o $TESTDIR/dsrename.out.h5 -v -s compound -d rename echo "Test copying empty, 'full' & 'nested' groups" - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_empty -d grp_empty - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d grp_dsets - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_nested -d grp_nested + TOOLTEST -i $TESTFILE -o $TESTDIR/grp_empty.out.h5 -v -s grp_empty -d grp_empty + TOOLTEST -i $TESTFILE -o $TESTDIR/grp_dsets.out.h5 -v -s grp_dsets -d grp_dsets + TOOLTEST -i $TESTFILE -o $TESTDIR/grp_nested.out.h5 -v -s grp_nested -d grp_nested echo "Test copying dataset within group in source file to group in destination" - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /grp_dsets/simple -d /grp_dsets/simple_group + TOOLTEST_PREFILL -i $TESTFILE -o $TESTDIR/simple_group.out.h5 grp_dsets grp_dsets /grp_dsets/simple /grp_dsets/simple_group echo "Test copying & renaming group" - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d grp_rename + TOOLTEST -i $TESTFILE -o $TESTDIR/grp_rename.out.h5 -v -s grp_dsets -d grp_rename echo "Test copying 'full' group hierarchy into group in destination file" - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d /grp_rename/grp_dsets + TOOLTEST_PREFILL -i $TESTFILE -o $TESTDIR/grp_dsets_rename.out.h5 grp_dsets grp_rename grp_dsets /grp_rename/grp_dsets echo "Test copying objects into group hier. that doesn't exist yet in destination file" - TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple -d /A/B1/simple - TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple -d /A/B2/simple2 - TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets/simple -d /C/D/simple - TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets -d /E/F/grp_dsets - TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_nested -d /G/H/grp_nested - - # Verify that the file created above is correct - H5LSTEST $FILEOUT - - # Remove output file created, if the "no cleanup" environment variable is - # not defined - if test -z "$HDF5_NOCLEANUP"; then - rm -f $FILEOUT - fi + TOOLTEST -i $TESTFILE -o $TESTDIR/A_B1_simple.out.h5 -vp -s simple -d /A/B1/simple + TOOLTEST -i $TESTFILE -o $TESTDIR/A_B2_simple2.out.h5 -vp -s simple -d /A/B2/simple2 + TOOLTEST -i $TESTFILE -o $TESTDIR/C_D_simple.out.h5 -vp -s /grp_dsets/simple -d /C/D/simple + TOOLTEST -i $TESTFILE -o $TESTDIR/E_F_grp_dsets.out.h5 -vp -s /grp_dsets -d /E/F/grp_dsets + TOOLTEST -i $TESTFILE -o $TESTDIR/G_H_grp_nested.out.h5 -vp -s /grp_nested -d /G/H/grp_nested } # Copy references in various way. -# adding to the destination file each time compare the result # # Assumed arguments: # <none> COPY_REFERENCES() { TESTFILE="$TESTDIR/h5copy_ref.h5" - FILEOUT="$TESTDIR/`basename h5copy_ref.h5 .h5`.out.h5" - - # Remove any output file left over from previous test run - rm -f $FILEOUT echo "Test copying object and region references" - TOOLTEST -f ref -i $TESTFILE -o $FILEOUT -v -s / -d /COPY - - # Verify that the file created above is correct - H5LSTEST $FILEOUT - - # Remove output file created, if the "no cleanup" environment variable is - # not defined - if test -z "$HDF5_NOCLEANUP"; then - rm -f $FILEOUT - fi + TOOLTEST_F -f ref -i $TESTFILE -o $TESTDIR/region_ref.out.h5 -v -s / -d /COPY } # Copy external links. @@ -465,43 +524,30 @@ COPY_REFERENCES() COPY_EXT_LINKS() { TESTFILE="$TESTDIR/h5copy_extlinks_src.h5" - FILEOUT="$TESTDIR/`basename h5copy_extlinks_src.h5 .h5`.out.h5" - - # Remove any output file left over from previous test run - rm -f $FILEOUT echo "Test copying external link directly without -f ext" - TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_dset -d /copy1_dset + TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_link.out.h5 -s /group_ext/extlink_dset -d /copy1_dset echo "Test copying external link directly with -f ext" - TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_dset -d /copy2_dset + TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_link_f.out.h5 -v -s /group_ext/extlink_dset -d /copy2_dset echo "Test copying dangling external link (no obj) directly without -f ext" - TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_notyet1 -d /copy_dangle1_1 + TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_dangle_noobj.out.h5 -s /group_ext/extlink_notyet1 -d /copy_dangle1_1 echo "Test copying dangling external link (no obj) directly with -f ext" - TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2 + TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_dangle_noobj_f.out.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2 echo "Test copying dangling external link (no file) directly without -f ext" - TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_notyet2 -d /copy_dangle2_1 + TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_dangle_nofile.out.h5 -s /group_ext/extlink_notyet2 -d /copy_dangle2_1 echo "Test copying dangling external link (no file) directly with -f ext" - TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2 + TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_dangle_nofile_f.out.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2 echo "Test copying a group contains external links without -f ext" - TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy1_group + TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_link_group.out.h5 -s /group_ext -d /copy1_group echo "Test copying a group contains external links with -f ext" - TOOLTEST -f ext -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy2_group - - # Verify that the file created above is correct - H5LSTEST $FILEOUT - - # Remove output file created, if the "no cleanup" environment variable is - # not defined - if test -z "$HDF5_NOCLEANUP"; then - rm -f $FILEOUT - fi + TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_link_group_f.out.h5 -v -s /group_ext -d /copy2_group } # Test misc. @@ -511,28 +557,13 @@ COPY_EXT_LINKS() TEST_MISC() { TESTFILE="$TESTDIR/h5copytst.h5" - FILEOUT="$TESTDIR/`basename h5copytst.h5 .h5`.out.h5" - - # Remove any output file left over from previous test run - rm -f $FILEOUT echo "Test copying object into group which doesn't exist, without -p" - TOOLTEST_FAIL h5copy_misc1.out -v -i $TESTFILE -o $FILEOUT -s /simple -d /g1/g2/simple + TOOLTEST_FAIL h5copy_misc1.out -i $TESTFILE -o $TESTDIR/h5copy_misc1.out.h5 -v -s /simple -d /g1/g2/simple echo "Test copying objects to the same file " - rm -f $FILEOUT - # create temporary test file ($FILEOUT) with some objects - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /simple -d /simple - TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /grp_dsets -d /grp_dsets - # actual test cases - TOOLTEST -i $FILEOUT -o $FILEOUT -v -s /simple -d /simple_cp - TOOLTEST -i $FILEOUT -o $FILEOUT -v -s /grp_dsets -d /grp_dsets_cp - - # Remove output file created, if the "no cleanup" environment variable is - # not defined - if test -z "$HDF5_NOCLEANUP"; then - rm -f $FILEOUT - fi + TOOLTEST_SAME -i $TESTFILE -o $TESTDIR/samefile1.out.h5 /simple /simple_cp + TOOLTEST_SAME -i $TESTFILE -o $TESTDIR/samefile2.out.h5 /grp_dsets /grp_dsets_cp } ############################################################################## diff --git a/tools/h5diff/CMakeLists.txt b/tools/h5diff/CMakeLists.txt index 87eca15..8eb5ad1 100644 --- a/tools/h5diff/CMakeLists.txt +++ b/tools/h5diff/CMakeLists.txt @@ -344,10 +344,9 @@ IF (BUILD_TESTING) IF (NOT "${last_test}" STREQUAL "") SET_TESTS_PROPERTIES (H5DIFF-${resultfile} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5DIFF-${resultfile}") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5DIFF-clear-${resultfile}-objects + NAME H5DIFF-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/${resultfile}.out ./testfiles/${resultfile}.out.err ) @@ -363,7 +362,7 @@ IF (BUILD_TESTING) -D "TEST_APPEND=EXIT CODE:" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5DIFF-${resultfile} PROPERTIES DEPENDS "H5DIFF-clear-${resultfile}-objects") + SET_TESTS_PROPERTIES (H5DIFF-${resultfile} PROPERTIES DEPENDS "H5DIFF-${resultfile}-clear-objects") ENDIF (HDF5_ENABLE_USING_MEMCHECKER) IF (H5_HAVE_PARALLEL) ADD_PH5_TEST (${resultfile} ${resultcode} ${ARGN}) @@ -381,10 +380,9 @@ IF (BUILD_TESTING) IF (NOT "${last_test}" STREQUAL "") SET_TESTS_PROPERTIES (PH5DIFF-${resultfile} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "PH5DIFF-${resultfile}") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME PH5DIFF-clear-${resultfile}-objects + NAME PH5DIFF-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/${resultfile}_p.out ./testfiles/${resultfile}_p.out.err ) @@ -402,7 +400,7 @@ IF (BUILD_TESTING) -D "TEST_SKIP_COMPARE=TRUE" -P "${HDF5_RESOURCES_DIR}/prunTest.cmake" ) - SET_TESTS_PROPERTIES (PH5DIFF-${resultfile} PROPERTIES DEPENDS "PH5DIFF-clear-${resultfile}-objects") + SET_TESTS_PROPERTIES (PH5DIFF-${resultfile} PROPERTIES DEPENDS "PH5DIFF-${resultfile}-clear-objects") ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_PH5_TEST file) @@ -413,15 +411,14 @@ IF (BUILD_TESTING) # If using memchecker add tests without using scripts IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5DIFF-clear-${testname}-objects + NAME H5DIFF-${testname}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/${testname}.out ./testfiles/${testname}.out.err ) # if there was a previous test IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DIFF-clear-${testname}-objects PROPERTIES DEPENDS ${last_test}) + SET_TESTS_PROPERTIES (H5DIFF-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5DIFF-clear-${testname}-objects") ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST (NAME H5DIFF-${testname} COMMAND $<TARGET_FILE:h5diff> ${ARGN}) @@ -429,10 +426,13 @@ IF (BUILD_TESTING) SET_TESTS_PROPERTIES (H5DIFF-${testname} PROPERTIES WILL_FAIL "true") ENDIF (NOT ${resultcode} STREQUAL "0") - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DIFF-${testname} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5DIFF-${testname}") + IF (HDF5_ENABLE_USING_MEMCHECKER) + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5DIFF-${testname} PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + ELSE (HDF5_ENABLE_USING_MEMCHECKER) + SET_TESTS_PROPERTIES (H5DIFF-${testname} PROPERTIES DEPENDS H5DIFF-${testname}-clear-objects) + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_NO_OUTPUT_TEST) ############################################################################## @@ -1092,13 +1092,13 @@ ADD_H5_TEST (h5diff_704 1 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_F ADD_H5_TEST (h5diff_705 1 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_FILE2} /dset) # same attr number , all different attr name -ADD_H5_TEST (h5diff_706 0 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_FILE2} /ntype) +ADD_H5_TEST (h5diff_706 1 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_FILE2} /ntype) # different attr number , same attr name (intersected) ADD_H5_TEST (h5diff_707 1 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_FILE2} /g2) # different attr number , all different attr name -ADD_H5_TEST (h5diff_708 0 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_FILE2} /g3) +ADD_H5_TEST (h5diff_708 1 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_FILE2} /g3) # when no attributes exist in both objects ADD_H5_TEST (h5diff_709 0 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_FILE2} /g4) diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in index 4676341..5567ceb 100644 --- a/tools/h5diff/Makefile.in +++ b/tools/h5diff/Makefile.in @@ -241,6 +241,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -292,7 +293,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/h5diff/testfiles/h5diff_706.txt b/tools/h5diff/testfiles/h5diff_706.txt index 38eeac5..5825150 100644 --- a/tools/h5diff/testfiles/h5diff_706.txt +++ b/tools/h5diff/testfiles/h5diff_706.txt @@ -10,4 +10,4 @@ datatype: </ntype> and </ntype> x integer1 x integer4 Attributes status: 0 common, 3 only in obj1, 3 only in obj2 -EXIT CODE: 0 +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_708.txt b/tools/h5diff/testfiles/h5diff_708.txt index add386b..a10a8b7 100644 --- a/tools/h5diff/testfiles/h5diff_708.txt +++ b/tools/h5diff/testfiles/h5diff_708.txt @@ -14,4 +14,4 @@ group : </g3> and </g3> x integer10 x integer3 Attributes status: 0 common, 3 only in obj1, 2 only in obj2 -EXIT CODE: 0 +EXIT CODE: 1 diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt index 56f49ac..3f39ae3 100644 --- a/tools/h5dump/CMakeLists.txt +++ b/tools/h5dump/CMakeLists.txt @@ -680,11 +680,11 @@ IF (BUILD_TESTING) SET (last_test "H5DUMP-${testname}") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5DUMP-clear-h5dump-${testname}-objects + NAME H5DUMP-h5dump-${testname}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove h5dump-${testname}.out h5dump-${testname}.out.err ) - SET_TESTS_PROPERTIES (H5DUMP-clear-h5dump-${testname}-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + SET_TESTS_PROPERTIES (H5DUMP-h5dump-${testname}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") ADD_TEST ( NAME H5DUMP-h5dump-${testname} COMMAND "${CMAKE_COMMAND}" @@ -696,7 +696,7 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=h5dump-${testname}.txt" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5DUMP-h5dump-${testname} PROPERTIES DEPENDS "H5DUMP-clear-h5dump-${testname}-objects") + SET_TESTS_PROPERTIES (H5DUMP-h5dump-${testname} PROPERTIES DEPENDS "H5DUMP-h5dump-${testname}-clear-objects") ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_HELP_TEST) @@ -724,14 +724,13 @@ IF (BUILD_TESTING) IF (NOT "${last_test}" STREQUAL "") SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5DUMP-${resultfile}") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5DUMP-clear-${resultfile}-objects + NAME H5DUMP-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} - -E remove ${resultfile}.out ${resultfile}.out.err + -E remove ${resultfile}.bin ${resultfile}.out ${resultfile}.out.err ) - SET_TESTS_PROPERTIES (H5DUMP-clear-${resultfile}-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") ADD_TEST ( NAME H5DUMP-${resultfile} COMMAND "${CMAKE_COMMAND}" @@ -743,7 +742,7 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=${resultfile}.ddl" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-clear-${resultfile}-objects") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-${resultfile}-clear-objects") ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_TEST file) @@ -758,14 +757,13 @@ IF (BUILD_TESTING) IF (NOT "${last_test}" STREQUAL "") SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5DUMP-${resultfile}") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5DUMP-clear-${resultfile}-objects + NAME H5DUMP-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove ${resultfile}.txt ${resultfile}.out ${resultfile}.out.err ) - SET_TESTS_PROPERTIES (H5DUMP-clear-${resultfile}-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") ADD_TEST ( NAME H5DUMP-${resultfile} COMMAND "${CMAKE_COMMAND}" @@ -777,49 +775,96 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=${resultfile}.ddl" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-clear-${resultfile}-objects") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-${resultfile}-clear-objects") ADD_TEST ( - NAME H5DUMP-output-cmp-${resultfile} + NAME H5DUMP-${resultfile}-output-cmp COMMAND ${CMAKE_COMMAND} -E compare_files ${resultfile}.txt ${resultfile}.exp ) - SET_TESTS_PROPERTIES (H5DUMP-output-cmp-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - SET_TESTS_PROPERTIES (H5DUMP-output-cmp-${resultfile} PROPERTIES DEPENDS H5DUMP-${resultfile}) + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-output-cmp PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-output-cmp PROPERTIES DEPENDS H5DUMP-${resultfile}) ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_TEST_EXPORT file) + MACRO (ADD_H5_TEST_EXPORT_DDL resultfile targetfile resultcode ddlfile) + # If using memchecker add tests without using scripts + IF (HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST (NAME H5DUMP-${resultfile} COMMAND $<TARGET_FILE:h5dump> --ddl=${ddlfile}.txt ${ARGN} ${resultfile}.txt ${targetfile}) + SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + IF (NOT ${resultcode} STREQUAL "0") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES WILL_FAIL "true") + ENDIF (NOT ${resultcode} STREQUAL "0") + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + ELSE (HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST ( + NAME H5DUMP-${resultfile}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove ${ddlfile}.txt ${resultfile}.txt ${resultfile}.out ${resultfile}.out.err + ) + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + ADD_TEST ( + NAME H5DUMP-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=--ddl=${ddlfile}.txt;${ARGN};${resultfile}.txt;${targetfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles/std" + -D "TEST_OUTPUT=${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${resultfile}.ddl" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-${resultfile}-clear-objects") + ADD_TEST ( + NAME H5DUMP-${resultfile}-output-cmp + COMMAND ${CMAKE_COMMAND} + -E compare_files ${resultfile}.txt ${resultfile}.exp + ) + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-output-cmp PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-output-cmp PROPERTIES DEPENDS H5DUMP-${resultfile}) + ADD_TEST ( + NAME H5DUMP-${resultfile}-output-cmp-ddl + COMMAND ${CMAKE_COMMAND} + -E compare_files ${ddlfile}.txt ${ddlfile}.exp + ) + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-output-cmp-ddl PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-output-cmp-ddl PROPERTIES DEPENDS H5DUMP-${resultfile}-output-cmp) + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) + ENDMACRO (ADD_H5_TEST_EXPORT_DDL file) + MACRO (ADD_H5_EXPORT_TEST resultfile targetfile resultcode) - ADD_TEST ( - NAME H5DUMP-output-${resultfile} - COMMAND $<TARGET_FILE:h5dump> ${ARGN} ${resultfile}.txt ${targetfile} - ) - SET_TESTS_PROPERTIES (H5DUMP-output-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DUMP-output-${resultfile} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5DUMP-output-${resultfile}") IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( + NAME H5DUMP-output-${resultfile}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove ${resultfile}.txt + ) + SET_TESTS_PROPERTIES (H5DUMP-output-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + ADD_TEST ( + NAME H5DUMP-output-${resultfile} + COMMAND $<TARGET_FILE:h5dump> ${ARGN} ${resultfile}.txt ${targetfile} + ) + SET_TESTS_PROPERTIES (H5DUMP-output-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + SET_TESTS_PROPERTIES (H5DUMP-output-${resultfile} PROPERTIES DEPENDS H5DUMP-output-${resultfile}-clear-objects) + ADD_TEST ( NAME H5DUMP-output-cmp-${resultfile} COMMAND ${CMAKE_COMMAND} -E compare_files ${resultfile}.txt ${resultfile}.exp ) SET_TESTS_PROPERTIES (H5DUMP-output-cmp-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DUMP-output-cmp-${resultfile} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5DUMP-output-cmp-${resultfile}") + SET_TESTS_PROPERTIES (H5DUMP-output-cmp-${resultfile} PROPERTIES DEPENDS H5DUMP-output-${resultfile}) ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_EXPORT_TEST file) MACRO (ADD_H5_MASK_TEST resultfile resultcode) IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5DUMP-clear-${resultfile}-objects + NAME H5DUMP-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove ${resultfile}.out ${resultfile}.out.err ) - SET_TESTS_PROPERTIES (H5DUMP-clear-${resultfile}-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") ADD_TEST ( NAME H5DUMP-${resultfile} COMMAND "${CMAKE_COMMAND}" @@ -832,18 +877,18 @@ IF (BUILD_TESTING) -D "TEST_MASK_ERROR=true" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-clear-${resultfile}-objects") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-${resultfile}-clear-objects") ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_MASK_TEST file) MACRO (ADD_H5ERR_MASK_TEST resultfile resultcode) IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5DUMP-clear-${resultfile}-objects + NAME H5DUMP-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove ${resultfile}.out ${resultfile}.out.err ) - SET_TESTS_PROPERTIES (H5DUMP-clear-${resultfile}-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") ADD_TEST ( NAME H5DUMP-${resultfile} COMMAND "${CMAKE_COMMAND}" @@ -857,10 +902,40 @@ IF (BUILD_TESTING) -D "TEST_MASK_ERROR=true" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-clear-${resultfile}-objects") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-${resultfile}-clear-objects") ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5ERR_MASK_TEST file) + MACRO (ADD_H5_TEST_IMPORT conffile resultfile testfile resultcode) + # If using memchecker add tests without using scripts + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST ( + NAME H5DUMP-IMPORT-${resultfile}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove ${conffile}.out ${conffile}.out.err ${resultfile}.bin ${resultfile}.h5 + ) + SET_TESTS_PROPERTIES (H5DUMP-IMPORT-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + ADD_TEST ( + NAME H5DUMP-IMPORT-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=${ARGN};-o;${resultfile}.bin;${testfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles/std" + -D "TEST_OUTPUT=${conffile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${conffile}.ddl" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + SET_TESTS_PROPERTIES (H5DUMP-IMPORT-${resultfile} PROPERTIES DEPENDS "H5DUMP-IMPORT-${resultfile}-clear-objects") + ADD_TEST (NAME H5DUMP-IMPORT-h5import-${resultfile} COMMAND h5import ${resultfile}.bin -c ${conffile}.out -o ${resultfile}.h5) + SET_TESTS_PROPERTIES (H5DUMP-IMPORT-h5import-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + SET_TESTS_PROPERTIES (H5DUMP-IMPORT-h5import-${resultfile} PROPERTIES DEPENDS H5DUMP-IMPORT-${resultfile}) + ADD_TEST (NAME H5DUMP-IMPORT-h5diff-${resultfile} COMMAND h5diff ${testfile} ${resultfile}.h5 /integer /integer) + SET_TESTS_PROPERTIES (H5DUMP-IMPORT-h5diff-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + SET_TESTS_PROPERTIES (H5DUMP-IMPORT-h5diff-${resultfile} PROPERTIES DEPENDS H5DUMP-IMPORT-h5import-${resultfile}) + ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) + ENDMACRO (ADD_H5_TEST_IMPORT file) + MACRO (ADD_H5_PBITS_TEST resultfile resultcode) # If using memchecker add tests without using scripts IF (HDF5_ENABLE_USING_MEMCHECKER) @@ -869,17 +944,16 @@ IF (BUILD_TESTING) IF (NOT ${resultcode} STREQUAL "0") SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES WILL_FAIL "true") ENDIF (NOT ${resultcode} STREQUAL "0") - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5DUMP-${resultfile}") + IF (NOT "${last_pbits_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS ${last_pbits_test}) + ENDIF (NOT "${last_pbits_test}" STREQUAL "") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5DUMP-clear-${resultfile}-objects + NAME H5DUMP-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove ${resultfile}.out ${resultfile}.out.err ) - SET_TESTS_PROPERTIES (H5DUMP-clear-${resultfile}-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/pbits") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/pbits") ADD_TEST ( NAME H5DUMP-${resultfile} COMMAND "${CMAKE_COMMAND}" @@ -891,7 +965,7 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=${resultfile}.ddl" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-clear-${resultfile}-objects") + SET_TESTS_PROPERTIES (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-${resultfile}-clear-objects") ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_PBITS_TEST file) @@ -915,17 +989,16 @@ IF (BUILD_TESTING) IF (NOT ${resultcode} STREQUAL "0") SET_TESTS_PROPERTIES (H5DUMP-XML-${resultfile} PROPERTIES WILL_FAIL "true") ENDIF (NOT ${resultcode} STREQUAL "0") - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DUMP-XML-${resultfile} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5DUMP-XML-${resultfile}") + IF (NOT "${last_xml_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5DUMP-XML-${resultfile} PROPERTIES DEPENDS ${last_xml_test}) + ENDIF (NOT "${last_xml_test}" STREQUAL "") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5DUMP-XML-clear-${resultfile}-objects + NAME H5DUMP-XML-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove ${resultfile}.out ${resultfile}.out.err ) - SET_TESTS_PROPERTIES (H5DUMP-XML-clear-${resultfile}-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/xml") + SET_TESTS_PROPERTIES (H5DUMP-XML-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/xml") ADD_TEST ( NAME H5DUMP-XML-${resultfile} COMMAND "${CMAKE_COMMAND}" @@ -937,7 +1010,7 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=${resultfile}.xml" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5DUMP-XML-${resultfile} PROPERTIES DEPENDS "H5DUMP-XML-clear-${resultfile}-objects") + SET_TESTS_PROPERTIES (H5DUMP-XML-${resultfile} PROPERTIES DEPENDS "H5DUMP-XML-${resultfile}-clear-objects") ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_XML_H5_TEST file) @@ -1017,6 +1090,8 @@ IF (BUILD_TESTING) tattrreg.out.err tattrregR.out tattrregR.out.err + tbin1LE.bin + tbinregR.txt tbinregR.out tbinregR.out.err tbigdims.out @@ -1151,7 +1226,7 @@ IF (BUILD_TESTING) tnoddlfile.out.err trawdatafile.out trawdatafile.out.err - twithddlfile.txt + trawdatafile.txt tno-subset.out tno-subset.out.err tnullspace.out @@ -1268,22 +1343,7 @@ IF (BUILD_TESTING) ADD_H5_TEST_EXPORT (trawdatafile packedbits.h5 0 --enable-error-stack -y -o) ADD_H5_TEST_EXPORT (tnoddlfile packedbits.h5 0 --enable-error-stack -O -y -o) - IF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST ( - NAME H5DUMP-clear-twithddlfile-export - COMMAND ${CMAKE_COMMAND} - -E remove twithddl.txt - ) - SET_TESTS_PROPERTIES (H5DUMP-clear-twithddlfile-export PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - ADD_H5_TEST_EXPORT (twithddlfile packedbits.h5 0 --enable-error-stack --ddl=twithddl.txt -y -o) - ADD_TEST ( - NAME H5DUMP-output-cmp-meta-twithddlfile - COMMAND ${CMAKE_COMMAND} - -E compare_files twithddl.txt twithddl.exp - ) - SET_TESTS_PROPERTIES (H5DUMP-output-cmp-meta-twithddlfile PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - SET_TESTS_PROPERTIES (H5DUMP-output-cmp-meta-twithddlfile PROPERTIES DEPENDS "H5DUMP-clear-twithddlfile-export") - ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) + ADD_H5_TEST_EXPORT_DDL (twithddlfile packedbits.h5 0 twithddl --enable-error-stack --ddl=twithddl.txt -y -o) # test for maximum display datasets ADD_H5_TEST (twidedisplay 0 --enable-error-stack -w0 packedbits.h5) @@ -1534,110 +1594,32 @@ IF (BUILD_TESTING) ADD_H5_TEST (tvms 0 --enable-error-stack tvms.h5) # test for binary output - ADD_H5_TEST (tbin1LE 0 --enable-error-stack -d integer -o out1LE.bin -b LE tbinary.h5) + ADD_H5_TEST (tbin1LE 0 --enable-error-stack -d integer -o tbin1LE.bin -b LE tbinary.h5) # test for string binary output ADD_H5_EXPORT_TEST (tstr2bin2 tstr2.h5 0 --enable-error-stack -d /g2/dset2 -b -o) ADD_H5_EXPORT_TEST (tstr2bin6 tstr2.h5 0 --enable-error-stack -d /g6/dset6 -b -o) # NATIVE default. the NATIVE test can be validated with h5import/h5diff - ADD_TEST (NAME H5DUMP-clear-objects-tbin1 COMMAND ${CMAKE_COMMAND} -E remove out1.bin) - SET_TESTS_PROPERTIES (H5DUMP-clear-objects-tbin1 PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - IF (HDF5_ENABLE_USING_MEMCHECKER) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DUMP-clear-objects-tbin1 PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - ADD_H5_TEST (tbin1 0 --enable-error-stack -d integer -o out1.bin -b tbinary.h5) - IF (HDF5_ENABLE_USING_MEMCHECKER) - SET_TESTS_PROPERTIES (H5DUMP-tbin1 PROPERTIES DEPENDS H5DUMP-clear-objects-tbin1) - SET (last_test "H5DUMP-tbin1") - ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - - IF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST (NAME H5DUMP-clear-out1D COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/std/out1D.h5) - SET_TESTS_PROPERTIES (H5DUMP-clear-out1D PROPERTIES DEPENDS H5DUMP-tbin1) - ADD_TEST (NAME H5DUMP-h5import-out1D COMMAND h5import out1.bin -c tbin1.out -o out1D.h5) - SET_TESTS_PROPERTIES (H5DUMP-h5import-out1D PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - SET_TESTS_PROPERTIES (H5DUMP-h5import-out1D PROPERTIES DEPENDS H5DUMP-clear-out1D) - ADD_TEST (NAME H5DUMP-h5diff-out1D COMMAND h5diff tbinary.h5 out1D.h5 /integer /integer) - SET_TESTS_PROPERTIES (H5DUMP-h5diff-out1D PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - SET_TESTS_PROPERTIES (H5DUMP-h5diff-out1D PROPERTIES DEPENDS H5DUMP-h5import-out1D) - ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) - + ADD_H5_TEST_IMPORT (tbin1 out1D tbinary.h5 0 --enable-error-stack -d integer -b) + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST (NAME H5DUMP-clear-out1 COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/std/out1.h5) - SET_TESTS_PROPERTIES (H5DUMP-clear-out1 PROPERTIES DEPENDS H5DUMP-tbin1) - ADD_TEST (NAME H5DUMP-h5import-out1 COMMAND h5import out1.bin -c out3.h5import -o out1.h5) - SET_TESTS_PROPERTIES (H5DUMP-h5import-out1 PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - SET_TESTS_PROPERTIES (H5DUMP-h5import-out1 PROPERTIES DEPENDS H5DUMP-clear-out1) - ADD_TEST (NAME H5DUMP-h5diff-out1 COMMAND h5diff tbinary.h5 out1.h5 /integer /integer) - SET_TESTS_PROPERTIES (H5DUMP-h5diff-out1 PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - SET_TESTS_PROPERTIES (H5DUMP-h5diff-out1 PROPERTIES DEPENDS H5DUMP-h5import-out1) + ADD_TEST (NAME H5DUMP-tbin2-bin-clear-objects COMMAND ${CMAKE_COMMAND} -E remove out2.bin) + SET_TESTS_PROPERTIES (H5DUMP-tbin2-bin-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + ADD_H5_TEST (tbin2 0 --enable-error-stack -b BE -d float -o out2.bin tbinary.h5) + SET_TESTS_PROPERTIES (H5DUMP-tbin2 PROPERTIES DEPENDS H5DUMP-tbin2-bin-clear-objects) ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST (NAME H5DUMP-clear-objects-tbin2 COMMAND ${CMAKE_COMMAND} -E remove out2.bin) - SET_TESTS_PROPERTIES (H5DUMP-clear-objects-tbin2 PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - IF (HDF5_ENABLE_USING_MEMCHECKER) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DUMP-clear-objects-tbin2 PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - ADD_H5_TEST (tbin2 0 --enable-error-stack -b BE -d float -o out2.bin tbinary.h5) - IF (HDF5_ENABLE_USING_MEMCHECKER) - SET_TESTS_PROPERTIES (H5DUMP-tbin2 PROPERTIES DEPENDS H5DUMP-clear-objects-tbin2) - SET (last_test "H5DUMP-tbin2") - ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - # the NATIVE test can be validated with h5import/h5diff - ADD_TEST (NAME H5DUMP-clear-objects-tbin3 COMMAND ${CMAKE_COMMAND} -E remove out3.bin) - SET_TESTS_PROPERTIES (H5DUMP-clear-objects-tbin3 PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - IF (HDF5_ENABLE_USING_MEMCHECKER) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DUMP-clear-objects-tbin3 PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - ADD_H5_TEST (tbin3 0 --enable-error-stack -d integer -o out3.bin -b NATIVE tbinary.h5) - IF (HDF5_ENABLE_USING_MEMCHECKER) - SET_TESTS_PROPERTIES (H5DUMP-tbin3 PROPERTIES DEPENDS H5DUMP-clear-objects-tbin3) - SET (last_test "H5DUMP-tbin3") - ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - - IF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST (NAME H5DUMP-clear-out3D COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/std/out3D.h5) - SET_TESTS_PROPERTIES (H5DUMP-clear-out3D PROPERTIES DEPENDS H5DUMP-tbin3) - ADD_TEST (NAME H5DUMP-h5import-out3D COMMAND h5import out3.bin -c tbin3.out -o out3D.h5) - SET_TESTS_PROPERTIES (H5DUMP-h5import-out3D PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - SET_TESTS_PROPERTIES (H5DUMP-h5import-out3D PROPERTIES DEPENDS H5DUMP-clear-out3D) - ADD_TEST (NAME H5DUMP-h5diff-out3D COMMAND h5diff tbinary.h5 out3D.h5 /integer /integer -q) - SET_TESTS_PROPERTIES (H5DUMP-h5diff-out3D PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - SET_TESTS_PROPERTIES (H5DUMP-h5diff-out3D PROPERTIES DEPENDS H5DUMP-h5import-out3D) - ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) - + ADD_H5_TEST_IMPORT (tbin3 out3D tbinary.h5 0 --enable-error-stack -d integer -b NATIVE) + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST (NAME H5DUMP-clear-out3 COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/std/out3.h5) - SET_TESTS_PROPERTIES (H5DUMP-h5import-out3 PROPERTIES DEPENDS H5DUMP-tbin3) - ADD_TEST (NAME H5DUMP-h5import-out3 COMMAND h5import out3.bin -c out3.h5import -o out3.h5) - SET_TESTS_PROPERTIES (H5DUMP-h5import-out3 PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - SET_TESTS_PROPERTIES (H5DUMP-h5import-out3 PROPERTIES DEPENDS H5DUMP-clear-out3) - ADD_TEST (NAME H5DUMP-h5diff-out3 COMMAND h5diff tbinary.h5 out3.h5 /integer /integer -q) - SET_TESTS_PROPERTIES (H5DUMP-h5diff-out3 PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - SET_TESTS_PROPERTIES (H5DUMP-h5diff-out3 PROPERTIES DEPENDS H5DUMP-h5import-out3) + ADD_TEST (NAME H5DUMP-tbin4-bin-clear-objects COMMAND ${CMAKE_COMMAND} -E remove out4.bin) + SET_TESTS_PROPERTIES (H5DUMP-tbin4-bin-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") + ADD_H5_TEST (tbin4 0 --enable-error-stack -d double -b FILE -o out4.bin tbinary.h5) + SET_TESTS_PROPERTIES (H5DUMP-tbin4 PROPERTIES DEPENDS H5DUMP-tbin4-bin-clear-objects) ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST (NAME H5DUMP-clear-objects-tbin4 COMMAND ${CMAKE_COMMAND} -E remove out4.bin) - SET_TESTS_PROPERTIES (H5DUMP-clear-objects-tbin4 PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std") - IF (HDF5_ENABLE_USING_MEMCHECKER) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DUMP-clear-objects-tbin4 PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - ADD_H5_TEST (tbin4 0 --enable-error-stack -d double -b FILE -o out4.bin tbinary.h5) - IF (HDF5_ENABLE_USING_MEMCHECKER) - SET_TESTS_PROPERTIES (H5DUMP-tbin4 PROPERTIES DEPENDS H5DUMP-clear-objects-tbin4) - SET (last_test "H5DUMP-tbin4") - ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - # test for dataset region references ADD_H5_TEST (tdatareg 0 --enable-error-stack tdatareg.h5) ADD_H5ERR_MASK_TEST (tdataregR 0 --enable-error-stack -R tdatareg.h5) @@ -1793,10 +1775,10 @@ IF (BUILD_TESTING) tpbitsUnsignedLongLong16.out.err ) SET_TESTS_PROPERTIES (H5DUMP_PACKED_BITS-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/pbits") - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DUMP_PACKED_BITS-clearall-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5DUMP_PACKED_BITS-clearall-objects") + IF (NOT "${last_pbits_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5DUMP_PACKED_BITS-clearall-objects PROPERTIES DEPENDS ${last_pbits_test}) + ENDIF (NOT "${last_pbits_test}" STREQUAL "") + SET (last_pbits_test "H5DUMP_PACKED_BITS-clearall-objects") ENDIF (HDF5_ENABLE_USING_MEMCHECKER) # test failure handling @@ -2014,9 +1996,9 @@ IF (BUILD_TESTING) tvlstr.h5.out.err ) SET_TESTS_PROPERTIES (H5DUMP-XML-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/xml") - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5DUMP-XML-clearall-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") + IF (NOT "${last_xml_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5DUMP-XML-clearall-objects PROPERTIES DEPENDS ${last_xml_test}) + ENDIF (NOT "${last_xml_test}" STREQUAL "") SET (last_test "H5DUMP-XML-clearall-objects") ENDIF (HDF5_ENABLE_USING_MEMCHECKER) diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in index 6b4a6e6..4741683 100644 --- a/tools/h5dump/Makefile.in +++ b/tools/h5dump/Makefile.in @@ -240,6 +240,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -291,7 +292,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/h5import/CMakeLists.txt b/tools/h5import/CMakeLists.txt index 235cb9f..97f7be9 100644 --- a/tools/h5import/CMakeLists.txt +++ b/tools/h5import/CMakeLists.txt @@ -128,31 +128,29 @@ IF (BUILD_TESTING) ############################################################################## ############################################################################## MACRO (ADD_H5_TEST testname importfile conffile testfile) - ADD_TEST ( - NAME H5IMPORT-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - ${testfile} - ${testfile}.new - ${testfile}.new.err - ${testfile}.out - ${testfile}.out.err - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5IMPORT-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5IMPORT-${testname}-clear-objects") - - ADD_TEST (NAME H5IMPORT-${testname} COMMAND $<TARGET_FILE:h5import> ${importfile} -c ${conffile} -o ${testfile}) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5IMPORT-${testname} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5IMPORT-${testname}") - - # If using memchecker add tests without using scripts - IF (NOT HDF5_ENABLE_USING_MEMCHECKER) + # If using memchecker skip macro based tests + IF (HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST (NAME H5IMPORT-${testname} COMMAND $<TARGET_FILE:h5import> ${importfile} -c ${conffile} -o ${testfile}) + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5IMPORT-${testname} PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5IMPORT-H5DMP-${testname} + NAME H5IMPORT-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${testfile} + ${testfile}.new + ${testfile}.new.err + ${testfile}.out + ${testfile}.out.err + ) + + ADD_TEST (NAME H5IMPORT-${testname} COMMAND $<TARGET_FILE:h5import> ${importfile} -c ${conffile} -o ${testfile}) + SET_TESTS_PROPERTIES (H5IMPORT-${testname} PROPERTIES DEPENDS H5IMPORT-${testname}-clear-objects) + + ADD_TEST ( + NAME H5IMPORT-${testname}-H5DMP COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" -D "TEST_ARGS:STRING=${testfile}" @@ -163,9 +161,9 @@ IF (BUILD_TESTING) -D "TEST_SKIP_COMPARE=TRUE" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5IMPORT-H5DMP-${testname} PROPERTIES DEPENDS H5IMPORT-${testname}) + SET_TESTS_PROPERTIES (H5IMPORT-${testname}-H5DMP PROPERTIES DEPENDS H5IMPORT-${testname}) ADD_TEST ( - NAME H5IMPORT-H5DMP_CMP-${testname} + NAME H5IMPORT-${testname}-H5DMP_CMP COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" -D "TEST_ARGS:STRING=testfiles/${testfile}" @@ -176,13 +174,12 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=${testfile}.new" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5IMPORT-H5DMP_CMP-${testname} PROPERTIES DEPENDS H5IMPORT-H5DMP-${testname}) - SET (last_test "H5IMPORT-H5DMP_CMP-${testname}") - ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) + SET_TESTS_PROPERTIES (H5IMPORT-${testname}-H5DMP_CMP PROPERTIES DEPENDS H5IMPORT-${testname}-H5DMP) + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_TEST testname importfile conffile testfile) MACRO (ADD_H5_DUMPTEST testname datasetname testfile) - # If using memchecker add tests without using scripts + # If using memchecker skip tests IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( NAME H5IMPORT-DUMP-${testname}-clear-objects @@ -197,13 +194,10 @@ IF (BUILD_TESTING) d${testfile}.dff d${testfile}.dff.err ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") IF ("${ARGN}" STREQUAL "BINARY") ADD_TEST ( - NAME H5IMPORT-DUMP-${testname}-H5DUMP + NAME H5IMPORT-DUMP-${testname}-H5DMP COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" -D "TEST_ARGS:STRING=-p;-d;${datasetname};-o;d${testfile}.bin;-b;testfiles/${testfile}" @@ -215,7 +209,7 @@ IF (BUILD_TESTING) ) ELSE ("${ARGN}" STREQUAL "BINARY") ADD_TEST ( - NAME H5IMPORT-DUMP-${testname}-H5DUMP + NAME H5IMPORT-DUMP-${testname}-H5DMP COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" -D "TEST_ARGS:STRING=-p;-d;${datasetname};-o;d${testfile}.bin;-y;--width=1;testfiles/${testfile}" @@ -226,7 +220,7 @@ IF (BUILD_TESTING) -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) ENDIF ("${ARGN}" STREQUAL "BINARY") - SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname}-H5DUMP PROPERTIES DEPENDS "H5IMPORT-DUMP-${testname}-clear-objects") + SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname}-H5DMP PROPERTIES DEPENDS "H5IMPORT-DUMP-${testname}-clear-objects") ADD_TEST ( NAME H5IMPORT-DUMP-${testname} @@ -239,10 +233,10 @@ IF (BUILD_TESTING) -D "TEST_SKIP_COMPARE=TRUE" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname} PROPERTIES DEPENDS "H5IMPORT-DUMP-${testname}-H5DUMP") + SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname} PROPERTIES DEPENDS "H5IMPORT-DUMP-${testname}-H5DMP") ADD_TEST ( - NAME H5IMPORT-DUMP-${testname}-H5DIFF + NAME H5IMPORT-DUMP-${testname}-H5DFF COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5diff>" -D "TEST_ARGS:STRING=-v;d${testfile};testfiles/${testfile};${datasetname};${datasetname}" @@ -253,21 +247,17 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=testfiles/d${testfile}.txt" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname}-H5DIFF PROPERTIES DEPENDS "H5IMPORT-DUMP-${testname}") - SET (last_test "H5IMPORT-DUMP-${testname}-H5DIFF") - ELSE (NOT HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST ( - NAME H5IMPORT-DUMP-${testname}-SKIPPED - COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${testname} ${datasetname} ${testfile}" - ) + SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname}-H5DFF PROPERTIES DEPENDS "H5IMPORT-DUMP-${testname}") ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_DUMPTEST testname datasetname testfile) MACRO (ADD_H5_SKIP_DUMPTEST testname datasetname testfile) - ADD_TEST ( - NAME H5IMPORT-DUMP-${testname}-SKIPPED - COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${testname} ${datasetname} ${testfile} --- DEFLATE filter not available" - ) + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST ( + NAME H5IMPORT-DUMP-${testname}-SKIPPED + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${testname} ${datasetname} ${testfile} --- DEFLATE filter not available" + ) + ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_SKIP_DUMPTEST testname datasetname testfile) # -------------------------------------------------------------------- @@ -283,27 +273,171 @@ IF (BUILD_TESTING) ############################################################################## ############################################################################## - # Remove any output file left over from previous test run - ADD_TEST ( - NAME H5IMPORT-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - binfp64.bin - binin8.bin - binin8w.bin - binin16.bin - binin32.bin - binuin16.bin - binuin32.bin - ${HDF5_REFERENCE_TEST_FILES} - ) - SET (last_test "H5IMPORT-clear-objects") + IF (HDF5_ENABLE_USING_MEMCHECKER) + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5IMPORT-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + binfp64.bin + binin8.bin + binin8w.bin + binin16.bin + binin32.bin + binuin16.bin + binuin32.bin + txtin32.h5 + txtin32.h5.new + txtin32.h5.new.err + txtin32.h5.out + txtin32.h5.out.err + txtin16.h5 + txtin16.h5.new + txtin16.h5.new.err + txtin16.h5.out + txtin16.h5.out.err + txtin8.h5 + txtin8.h5.new + txtin8.h5.new.err + txtin8.h5.out + txtin8.h5.out.err + txtuin16.h5 + txtuin16.h5.new + txtuin16.h5.new.err + txtuin16.h5.out + txtuin16.h5.out.err + txtuin32.h5 + txtuin32.h5.new + txtuin32.h5.new.err + txtuin32.h5.out + txtuin32.h5.out.err + txtfp32.h5 + txtfp32.h5.new + txtfp32.h5.new.err + txtfp32.h5.out + txtfp32.h5.out.err + txtfp64.h5 + txtfp64.h5.new + txtfp64.h5.new.err + txtfp64.h5.out + txtfp64.h5.out.err + binfp64.h5 + binfp64.h5.new + binfp64.h5.new.err + binfp64.h5.out + binfp64.h5.out.err + binin8.h5 + binin8.h5.new + binin8.h5.new.err + binin8.h5.out + binin8.h5.out.err + binin8w.h5 + binin8w.h5.new + binin8w.h5.new.err + binin8w.h5.out + binin8w.h5.out.err + binin16.h5 + binin16.h5.new + binin16.h5.new.err + binin16.h5.out + binin16.h5.out.err + binin32.h5 + binin32.h5.new + binin32.h5.new.err + binin32.h5.out + binin32.h5.out.err + binuin16.h5 + binuin16.h5.new + binuin16.h5.new.err + binuin16.h5.out + binuin16.h5.out.err + binuin32.h5 + binuin32.h5.new + binuin32.h5.new.err + binuin32.h5.out + binuin32.h5.out.err + txtstr.h5 + txtstr.h5.new + txtstr.h5.new.err + txtstr.h5.out + txtstr.h5.out.err + textpfe.h5 + textpfe.h5.new + textpfe.h5.new.err + textpfe.h5.out + textpfe.h5.out.err + dbinfp64.h5 + dbinfp64.h5.bin + dbinfp64.h5.imp + dbinfp64.h5.imp.err + dbinfp64.h5.dmp + dbinfp64.h5.dmp.err + dbinfp64.h5.dff + dbinfp64.h5.dff.err + dbinin8.h5 + dbinin8.h5.bin + dbinin8.h5.imp + dbinin8.h5.imp.err + dbinin8.h5.dmp + dbinin8.h5.dmp.err + dbinin8.h5.dff + dbinin8.h5.dff.err + dbinin8w.h5 + dbinin8w.h5.bin + dbinin8w.h5.imp + dbinin8w.h5.imp.err + dbinin8w.h5.dmp + dbinin8w.h5.dmp.err + dbinin8w.h5.dff + dbinin8w.h5.dff.err + dbinin16.h5 + dbinin16.h5.bin + dbinin16.h5.imp + dbinin16.h5.imp.err + dbinin16.h5.dmp + dbinin16.h5.dmp.err + dbinin16.h5.dff + dbinin16.h5.dff.err + dbinin32.h5 + dbinin32.h5.bin + dbinin32.h5.imp + dbinin32.h5.imp.err + dbinin32.h5.dmp + dbinin32.h5.dmp.err + dbinin32.h5.dff + dbinin32.h5.dff.err + dbinuin16.h5 + dbinuin16.h5.bin + dbinuin16.h5.imp + dbinuin16.h5.imp.err + dbinuin16.h5.dmp + dbinuin16.h5.dmp.err + dbinuin16.h5.dff + dbinuin16.h5.dff.err + dbinuin32.h5 + dbinuin32.h5.bin + dbinuin32.h5.imp + dbinuin32.h5.imp.err + dbinuin32.h5.dmp + dbinuin32.h5.dmp.err + dbinuin32.h5.dff + dbinuin32.h5.dff.err + dtxtstr.h5 + dtxtstr.h5.bin + dtxtstr.h5.imp + dtxtstr.h5.imp.err + dtxtstr.h5.dmp + dtxtstr.h5.dmp.err + dtxtstr.h5.dff + dtxtstr.h5.dff.err + ) + SET (last_test "H5IMPORT-clear-objects") + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST (NAME H5IMPORT-h5importtest COMMAND $<TARGET_FILE:h5importtest>) IF (NOT "${last_test}" STREQUAL "") SET_TESTS_PROPERTIES (H5IMPORT-h5importtest PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5IMPORT-h5importtest") # ----- TESTING "ASCII I32 rank 3 - Output BE " ; ADD_H5_TEST (ASCII_I32 testfiles/txtin32.txt testfiles/txtin32.conf txtin32.h5) diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in index 16e8901..9ad2341 100644 --- a/tools/h5import/Makefile.in +++ b/tools/h5import/Makefile.in @@ -234,6 +234,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -285,7 +286,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/h5jam/CMakeLists.txt b/tools/h5jam/CMakeLists.txt index 437fed3..95777b3 100644 --- a/tools/h5jam/CMakeLists.txt +++ b/tools/h5jam/CMakeLists.txt @@ -112,6 +112,13 @@ IF (BUILD_TESTING) ENDIF (NOT "${resultcode}" STREQUAL "0") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( + NAME H5JAM-${expectfile}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${expectfile}.out + ${expectfile}.out.err + ) + ADD_TEST ( NAME H5JAM-${expectfile} COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5jam>" @@ -122,6 +129,7 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=testfiles/${expectfile}.txt" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) + SET_TESTS_PROPERTIES (H5JAM-${expectfile} PROPERTIES DEPENDS H5JAM-${expectfile}-clear-objects) ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (TEST_H5JAM_OUTPUT) @@ -138,6 +146,13 @@ IF (BUILD_TESTING) ENDIF (NOT "${resultcode}" STREQUAL "0") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( + NAME H5JAM-UNJAM-${expectfile}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${expectfile}.out + ${expectfile}.out.err + ) + ADD_TEST ( NAME H5JAM-UNJAM-${expectfile} COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>" @@ -148,50 +163,38 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=testfiles/${expectfile}.txt" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) + SET_TESTS_PROPERTIES (H5JAM-UNJAM-${expectfile} PROPERTIES DEPENDS H5JAM-UNJAM-${expectfile}-clear-objects) ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (TEST_H5UNJAM_OUTPUT) - MACRO (CLEANUP testname) - ADD_TEST ( - NAME H5JAM-CLEANUP-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} -E remove ${ARGN} - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5JAM-CLEANUP-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5JAM-CLEANUP-${testname}-clear-objects") - ENDMACRO(CLEANUP testname testfile) - - MACRO (CHECKFILE testname expected actual) + MACRO (CHECKFILE testname testdepends expected actual) # If using memchecker add tests without using scripts IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5JAM-CHECKFILE-${testname}-clear-objects + NAME H5JAM-${testname}-CHECKFILE-clear-objects COMMAND ${CMAKE_COMMAND} -E remove - ${expected}.new - ${expected}.new.err + ${actual}.new + ${actual}.new.err ${actual}.out ${actual}.out.err ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECKFILE-clear-objects PROPERTIES DEPENDS ${testdepends}) ADD_TEST ( - NAME H5JAM-CHECKFILE-H5DMP-${testname} + NAME H5JAM-${testname}-CHECKFILE-H5DMP COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" -D "TEST_ARGS:STRING=testfiles/${expected}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_OUTPUT=${expected}.new" + -D "TEST_OUTPUT=${actual}.new" -D "TEST_EXPECT=0" -D "TEST_FILTER=(^(HDF5)[^\n]*)" -D "TEST_SKIP_COMPARE=TRUE" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-H5DMP-${testname} PROPERTIES DEPENDS H5JAM-CHECKFILE-${testname}-clear-objects) + SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECKFILE-H5DMP PROPERTIES DEPENDS H5JAM-${testname}-CHECKFILE-clear-objects) ADD_TEST ( - NAME H5JAM-CHECKFILE-H5DMP_CMP-${testname} + NAME H5JAM-${testname}-CHECKFILE-H5DMP_CMP COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" -D "TEST_ARGS:STRING=${actual}" @@ -199,168 +202,210 @@ IF (BUILD_TESTING) -D "TEST_OUTPUT=${actual}.out" -D "TEST_EXPECT=0" -D "TEST_FILTER=(^(HDF5)[^\n]*)" - -D "TEST_REFERENCE=${expected}.new" + -D "TEST_REFERENCE=${actual}.new" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-H5DMP_CMP-${testname} PROPERTIES DEPENDS H5JAM-CHECKFILE-H5DMP-${testname}) - SET (last_test "H5JAM-CHECKFILE-H5DMP_CMP-${testname}") + SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECKFILE-H5DMP_CMP PROPERTIES DEPENDS H5JAM-${testname}-CHECKFILE-H5DMP) ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ENDMACRO(CHECKFILE testname expected actual) - - MACRO (SETUP testname infile outfile) - ADD_TEST ( - NAME H5JAM-SETUP-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} -E remove ${outfile} - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5JAM-SETUP-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - ADD_TEST ( - NAME H5JAM-SETUP-${testname} - COMMAND ${CMAKE_COMMAND} -E copy_if_different ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/testfiles/${infile} ${PROJECT_BINARY_DIR}/${outfile} - ) - SET_TESTS_PROPERTIES (H5JAM-SETUP-${testname} PROPERTIES DEPENDS H5JAM-SETUP-${testname}-clear-objects) - SET (last_test "H5JAM-SETUP-${testname}") - ENDMACRO(SETUP testname infile outfile) + ENDMACRO(CHECKFILE testname testdepends expected actual) - MACRO (CHECK_UB_1 testname testfile ufile) + MACRO (UNJAMTEST testname setfile infile ufile chkfile outfile) IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5JAM-CHECK_UB_1-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - ${testfile}.len.txt - ${testfile}.cmp - ${ufile}.cmp + NAME H5JAM-${testname}-UNJAM-SETUP-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove ${infile} + ) + ADD_TEST ( + NAME H5JAM-${testname}-UNJAM-SETUP + COMMAND ${CMAKE_COMMAND} -E copy_if_different ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/testfiles/${setfile} ${PROJECT_BINARY_DIR}/${infile} + ) + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-SETUP PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-SETUP-clear-objects) + ADD_TEST ( + NAME H5JAM-${testname}-UNJAM-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove ${outfile} ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5JAM-CHECK_UB_1-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-clear-objects PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-SETUP) + IF (NOT "${ufile}" STREQUAL "NONE") + ADD_TEST ( + NAME H5JAM-${testname}-UNJAM_D-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove ${ufile} + ) + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM_D-clear-objects PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects) + ADD_TEST (NAME H5JAM-${testname}-UNJAM COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -u ${ufile} -o ${outfile}) + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM_D-clear-objects) + SET (compare_test ${ufile}) + ELSE (NOT "${ufile}" STREQUAL "NONE") + IF (NOT "${ARGN}" STREQUAL "--delete") + ADD_TEST ( + NAME H5JAM-${testname}-UNJAM_D-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove ${outfile}.ufile.txt ${outfile}.ufile.txt.err + ) + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM_D-clear-objects PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects) + ADD_TEST ( + NAME H5JAM-${testname}-UNJAM + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>" + -D "TEST_ARGS:STRING=-i;${infile};-o;${outfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_OUTPUT=${outfile}.ufile.txt" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM_D-clear-objects) + SET (compare_test "${outfile}.ufile.txt") + ELSE (NOT "${ARGN}" STREQUAL "--delete") + ADD_TEST (NAME H5JAM-${testname}-UNJAM COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -o ${outfile}) + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects) + SET (compare_test "") + ENDIF (NOT "${ARGN}" STREQUAL "--delete") + ENDIF (NOT "${ufile}" STREQUAL "NONE") + IF (NOT "${compare_test}" STREQUAL "") + ADD_TEST ( + NAME H5JAM-${testname}-UNJAM-CHECK_UB_1-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${infile}.len.txt + ${infile}.cmp + ${infile}-ub.cmp + ) + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_UB_1-clear-objects PROPERTIES DEPENDS "H5JAM-${testname}-UNJAM") + ADD_TEST ( + NAME H5JAM-${testname}-UNJAM-CHECK_UB_1 + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:tellub>" + -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>" + -D "TEST_CHECKUB=YES" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_HFILE=${infile}" + -D "TEST_UFILE=${compare_test}" + -D "TEST_EXPECT=0" + -D "TEST_OFILE=" + -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake" + ) + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_UB_1 PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-CHECK_UB_1-clear-objects) + ENDIF (NOT "${compare_test}" STREQUAL "") + ADD_TEST ( - NAME H5JAM-CHECK_UB_1-${testname} + NAME H5JAM-${testname}-UNJAM-CHECK_NOUB COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:tellub>" -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>" - -D "TEST_CHECKUB=YES" + -D "TEST_CHECKUB=NO" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_HFILE=${testfile}" - -D "TEST_UFILE=${ufile}" + -D "TEST_HFILE=${outfile}" -D "TEST_EXPECT=0" - -D "TEST_OFILE=${ARGN}" + -D "TEST_UFILE=NULL" + -D "TEST_OFILE=NULL" -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake" ) - SET_TESTS_PROPERTIES (H5JAM-CHECK_UB_1-${testname} PROPERTIES DEPENDS H5JAM-CHECK_UB_1-${testname}-clear-objects) - SET (last_test "H5JAM-CHECK_UB_1-${testname}") + IF (NOT "${compare_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_NOUB PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-CHECK_UB_1) + ELSE (NOT "${compare_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_NOUB PROPERTIES DEPENDS H5JAM-${testname}-UNJAM) + ENDIF (NOT "${compare_test}" STREQUAL "") + + CHECKFILE (${testname} "H5JAM-${testname}-UNJAM-CHECK_NOUB" ${chkfile} ${outfile}) ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ENDMACRO(CHECK_UB_1 testname testfile ufile) + ENDMACRO(UNJAMTEST testname infile ufile outfile) - MACRO (CHECK_NOUB testname testfile) + MACRO (JAMTEST testname jamfile infile chkfile outfile) IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5JAM-CHECK_NOUB-${testname} + NAME H5JAM-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove ${outfile} ${infile}.cpy.h5 + ) + ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST (NAME H5JAM-${testname} COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i testfiles/${infile} -o ${outfile} ${ARGN}) + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) + SET_TESTS_PROPERTIES (H5JAM-${testname} PROPERTIES DEPENDS H5JAM-${testname}-clear-objects) + SET (compare_test ${outfile}) + SET (compare_orig testfiles/${infile}) + IF ("${ARGN}" STREQUAL "--clobber") + SET (compare_orig "") + ENDIF ("${ARGN}" STREQUAL "--clobber") + + ADD_TEST ( + NAME H5JAM-${testname}-CHECK_UB_1-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${compare_test}.len.txt + ${compare_test}.cmp + ${compare_test}-ub.cmp + ) + SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECK_UB_1-clear-objects PROPERTIES DEPENDS "H5JAM-${testname}") + ADD_TEST ( + NAME H5JAM-${testname}-CHECK_UB_1 COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:tellub>" -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>" - -D "TEST_CHECKUB=NO" + -D "TEST_CHECKUB=YES" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_HFILE=${testfile}" + -D "TEST_HFILE=${compare_test}" + -D "TEST_UFILE=testfiles/${jamfile}" -D "TEST_EXPECT=0" - -D "TEST_UFILE=NULL" - -D "TEST_OFILE=NULL" + -D "TEST_OFILE=${compare_orig}" -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake" ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5JAM-CHECK_NOUB-${testname} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5JAM-CHECK_NOUB-${testname}") + SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECK_UB_1 PROPERTIES DEPENDS H5JAM-${testname}-CHECK_UB_1-clear-objects) + CHECKFILE (${testname} "H5JAM-${testname}-CHECK_UB_1" ${chkfile} ${outfile}) ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ENDMACRO(CHECK_NOUB testname testfile) + ENDMACRO (JAMTEST testname jamfile infile outfile) - MACRO (UNJAMTEST testname infile ufile outfile) - ADD_TEST ( - NAME H5JAM-UNJAM-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} -E remove ${outfile} - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - IF (NOT "${ufile}" STREQUAL "NONE") + MACRO (JAMTEST_NONE testname jamfile infile setfile chkfile) + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5JAM-UNJAM_D-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} -E remove ${ufile} + NAME H5JAM-${testname}_NONE-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove + ${chkfile} ${chkfile}.cpy.h5 ) - SET_TESTS_PROPERTIES (H5JAM-UNJAM_D-${testname}-clear-objects PROPERTIES DEPENDS H5JAM-UNJAM-${testname}-clear-objects) - ADD_TEST (NAME H5JAM-UNJAM-${testname} COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -u ${ufile} -o ${outfile}) - SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname} PROPERTIES DEPENDS H5JAM-UNJAM_D-${testname}-clear-objects) - SET (compare_test ${ufile}) - ELSE (NOT "${ufile}" STREQUAL "NONE") - IF (NOT "${ARGN}" STREQUAL "--delete") - ADD_TEST ( - NAME H5JAM-UNJAM_D-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} -E remove ${outfile}.ufile.txt ${outfile}.ufile.txt.err - ) - SET_TESTS_PROPERTIES (H5JAM-UNJAM_D-${testname}-clear-objects PROPERTIES DEPENDS H5JAM-UNJAM-${testname}-clear-objects) - IF (HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST (NAME H5JAM-UNJAM-${testname} COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -o ${outfile}) - ELSE (HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST ( - NAME H5JAM-UNJAM-${testname} - COMMAND "${CMAKE_COMMAND}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>" - -D "TEST_ARGS:STRING=-i;${infile};-o;${outfile}" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_OUTPUT=${outfile}.ufile.txt" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -P "${HDF5_RESOURCES_DIR}/runTest.cmake" - ) - ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname} PROPERTIES DEPENDS H5JAM-UNJAM_D-${testname}-clear-objects) - SET (compare_test "${outfile}.ufile.txt") - ELSE (NOT "${ARGN}" STREQUAL "--delete") - ADD_TEST (NAME H5JAM-UNJAM-${testname} COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -o ${outfile}) - SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname} PROPERTIES DEPENDS H5JAM-UNJAM-${testname}-clear-objects) - SET (compare_test "") - ENDIF (NOT "${ARGN}" STREQUAL "--delete") - ENDIF (NOT "${ufile}" STREQUAL "NONE") - SET (last_test "H5JAM-UNJAM-${testname}") - IF (NOT "${compare_test}" STREQUAL "") - CHECK_UB_1 (${testname} ${infile} ${compare_test}) - ENDIF (NOT "${compare_test}" STREQUAL "") - CHECK_NOUB (${testname} ${outfile}) - ENDMACRO(UNJAMTEST testname infile ufile outfile) + ADD_TEST ( + NAME H5JAM-${testname}_NONE-SETUP + COMMAND ${CMAKE_COMMAND} -E copy_if_different testfiles/${setfile} ${chkfile} + ) + SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE-SETUP PROPERTIES DEPENDS H5JAM-${testname}_NONE-clear-objects) - MACRO (JAMTEST testname jamfile infile outfile) - ADD_TEST ( - NAME H5JAM-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} -E remove ${outfile} ${infile}.cpy.h5 - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5JAM-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5JAM-${testname}-clear-objects") - IF ("${outfile}" STREQUAL "NONE") ADD_TEST ( - NAME H5JAM-NONE_COPY-${testname} - COMMAND ${CMAKE_COMMAND} -E copy_if_different ${infile} ${infile}.cpy.h5 + NAME H5JAM-${testname}_NONE_COPY + COMMAND ${CMAKE_COMMAND} -E copy_if_different ${chkfile} ${chkfile}.cpy.h5 ) - SET_TESTS_PROPERTIES (H5JAM-NONE_COPY-${testname} PROPERTIES DEPENDS ${last_test}) - SET (last_test "H5JAM-NONE_COPY-${testname}") - ADD_TEST (NAME H5JAM-${testname} COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i ${infile} ${ARGN}) - SET (compare_test ${infile}) - SET (compare_orig ${infile}.cpy.h5) - ELSE ("${outfile}" STREQUAL "NONE") - ADD_TEST (NAME H5JAM-${testname} COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i testfiles/${infile} -o ${outfile} ${ARGN}) - SET (compare_test ${outfile}) - SET (compare_orig testfiles/${infile}) - ENDIF ("${outfile}" STREQUAL "NONE") - SET_TESTS_PROPERTIES (H5JAM-${testname} PROPERTIES DEPENDS ${last_test}) - SET (last_test "H5JAM-${testname}") - IF ("${ARGN}" STREQUAL "--clobber") - SET (compare_orig "") - ENDIF ("${ARGN}" STREQUAL "--clobber") - CHECK_UB_1 (${testname} ${compare_test} testfiles/${jamfile} ${compare_orig}) - ENDMACRO (JAMTEST testname jamfile infile outfile) + SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE_COPY PROPERTIES DEPENDS H5JAM-${testname}_NONE-SETUP) + + ADD_TEST (NAME H5JAM-${testname}_NONE COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i ${chkfile} ${ARGN}) + SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE PROPERTIES DEPENDS H5JAM-${testname}_NONE_COPY) + + SET (compare_test ${chkfile}) + SET (compare_orig ${chkfile}.cpy.h5) + IF ("${ARGN}" STREQUAL "--clobber") + SET (compare_orig "") + ENDIF ("${ARGN}" STREQUAL "--clobber") + + ADD_TEST ( + NAME H5JAM-${testname}_NONE-CHECK_UB_1-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${compare_test}.len.txt + ${compare_test}.cmp + ${compare_test}-ub.cmp + ) + SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE-CHECK_UB_1-clear-objects PROPERTIES DEPENDS "H5JAM-${testname}_NONE") + ADD_TEST ( + NAME H5JAM-${testname}_NONE-CHECK_UB_1 + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:tellub>" + -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>" + -D "TEST_CHECKUB=YES" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_HFILE=${compare_test}" + -D "TEST_UFILE=testfiles/${jamfile}" + -D "TEST_EXPECT=0" + -D "TEST_OFILE=${compare_orig}" + -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake" + ) + SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE-CHECK_UB_1 PROPERTIES DEPENDS H5JAM-${testname}_NONE-CHECK_UB_1-clear-objects) + CHECKFILE (${testname} "H5JAM-${testname}_NONE-CHECK_UB_1" ${infile} ${chkfile}) + ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) + ENDMACRO (JAMTEST_NONE testname jamfile infile setfile chkfile) ############################################################################## ############################################################################## @@ -377,118 +422,45 @@ IF (BUILD_TESTING) # don't allow HDF5 format file as an user block file TEST_H5JAM_OUTPUT(h5jam-ub-nohdf5 1 -i testfiles/tall.h5 -u testfiles/tall.h5 -o tall-tmp.h5) - JAMTEST (tall_u10 u10.txt tall.h5 ta2.h5) - CHECKFILE (tall_u10 tall.h5 ta2.h5) -# CLEANUP (tall_u10 ta2.h5) - JAMTEST (tall_u511 u511.txt tall.h5 ta3.h5) - CHECKFILE (tall_u511 tall.h5 ta3.h5) -# CLEANUP (tall_u511 ta3.h5) - JAMTEST (tall_u512 u512.txt tall.h5 ta4.h5) - CHECKFILE (tall_u512 tall.h5 ta4.h5) -# CLEANUP (tall_u512 ta4.h5) - JAMTEST (tall_u513 u513.txt tall.h5 ta5.h5) - CHECKFILE (tall_u513 tall.h5 ta5.h5) -# CLEANUP (tall_u513 ta5.h5) - - SETUP (ta_u10 tall.h5 ta.h5) - JAMTEST (ta_u10 u10.txt ta.h5 NONE) - CHECKFILE (ta_u10 tall.h5 ta.h5) - SETUP (ta_u511 tall.h5 ta.h5 NOCLEAN) - JAMTEST (ta_u511 u511.txt ta.h5 NONE) - CHECKFILE (ta_u511 tall.h5 ta.h5) - SETUP (ta_u512 tall.h5 ta.h5 NOCLEAN) - JAMTEST (ta_u512 u512.txt ta.h5 NONE) - CHECKFILE (ta_u512 tall.h5 ta.h5) - SETUP (ta_u513 tall.h5 ta.h5 NOCLEAN) - JAMTEST (ta_u513 u513.txt ta.h5 NONE) - CHECKFILE (ta_u513 tall.h5 ta.h5) -# CLEANUP (ta ta.h5) - - JAMTEST (twithub_u10 u10.txt twithub.h5 tax2.h5) - CHECKFILE (twithub_u10 tall.h5 tax2.h5) -# CLEANUP (twithub_u10 tax2.h5) - JAMTEST (twithub_u511 u511.txt twithub.h5 tax3.h5) - CHECKFILE (twithub_u511 tall.h5 tax3.h5) -# CLEANUP (twithub_u511 tax3.h5) - JAMTEST (twithub_u512 u512.txt twithub.h5 tax4.h5) - CHECKFILE (twithub_u512 tall.h5 tax4.h5) -# CLEANUP (twithub_u512 tax4.h5) - JAMTEST (twithub_u513 u513.txt twithub.h5 tax5.h5) - CHECKFILE (twithub_u513 tall.h5 tax5.h5) -# CLEANUP (twithub_u513 tax5.h5) - - JAMTEST (twithub513_u10 u10.txt twithub513.h5 tax6.h5) - CHECKFILE (twithub513_u10 tall.h5 tax6.h5) -# CLEANUP (twithub513_u10 tax6.h5) - JAMTEST (twithub513_u511 u511.txt twithub513.h5 tax7.h5) - CHECKFILE (twithub513_u511 tall.h5 tax7.h5) -# CLEANUP (twithub513_u511 tax7.h5) - JAMTEST (twithub513_u512 u512.txt twithub513.h5 tax8.h5) - CHECKFILE (twithub513_u512 tall.h5 tax8.h5) -# CLEANUP (twithub513_u512 tax8.h5) - JAMTEST (twithub513_u513 u513.txt twithub513.h5 tax9.h5) - CHECKFILE (twithub513_u513 tall.h5 tax9.h5) -# CLEANUP (twithub513_u513 tax9.h5) - - JAMTEST (twithub_u10_c u10.txt twithub.h5 taz2.h5 --clobber) - CHECKFILE (twithub_u10_c tall.h5 taz2.h5) -# CLEANUP (twithub_u10_c taz2.h5) - JAMTEST (twithub_u511_c u511.txt twithub.h5 taz3.h5 --clobber) - CHECKFILE (twithub_u511_c tall.h5 taz3.h5) -# CLEANUP (twithub_u511_c taz3.h5) - JAMTEST (twithub_u512_c u512.txt twithub.h5 taz4.h5 --clobber) - CHECKFILE (twithub_u512_c tall.h5 taz4.h5) -# CLEANUP (twithub_u512_c taz4.h5) - JAMTEST (twithub_u513_c u513.txt twithub.h5 taz5.h5 --clobber) - CHECKFILE (twithub_u513_c tall.h5 taz5.h5) -# CLEANUP (twithub_u513_c taz5.h5) - - JAMTEST (twithub513_u10_c u10.txt twithub513.h5 taz6.h5 --clobber) - CHECKFILE (twithub513_u10_c tall.h5 taz6.h5) -# CLEANUP (twithub513_u10_c taz6.h5) - JAMTEST (twithub513_u511_c u511.txt twithub513.h5 taz7.h5 --clobber) - CHECKFILE (twithub513_u511_c tall.h5 taz7.h5) -# CLEANUP (twithub513_u511_c taz7.h5) - JAMTEST (twithub513_u512_c u512.txt twithub513.h5 taz8.h5 --clobber) - CHECKFILE (twithub513_u512_c tall.h5 taz8.h5) -# CLEANUP (twithub513_u512_c taz8.h5) - JAMTEST (twithub513_u513_c u513.txt twithub513.h5 taz9.h5 --clobber) - CHECKFILE (twithub513_u513_c tall.h5 taz9.h5) -# CLEANUP (twithub513_u513_c taz9.h5) - - SETUP (N_twithub_u10_c twithub.h5 tay2.h5) - JAMTEST (N_twithub_u10_c u10.txt tay2.h5 NONE --clobber) - CHECKFILE (N_twithub_u10_c tall.h5 tay2.h5) -# CLEANUP (N_twithub_u10_c tay2.h5) - SETUP (N_twithub_u511_c twithub.h5 tay3.h5) - JAMTEST (N_twithub_u511_c u511.txt tay3.h5 NONE --clobber) - CHECKFILE (N_twithub_u511_c tall.h5 tay3.h5) -# CLEANUP (N_twithub_u511_c tay3.h5) - SETUP (N_twithub_u512_c twithub.h5 tay4.h5) - JAMTEST (N_twithub_u512_c u512.txt tay4.h5 NONE --clobber) - CHECKFILE (N_twithub_u512_c tall.h5 tay4.h5) -# CLEANUP (N_twithub_u512_c tay4.h5) - SETUP (N_twithub_u513_c twithub.h5 tay5.h5) - JAMTEST (N_twithub_u513_c u513.txt tay5.h5 NONE --clobber) - CHECKFILE (N_twithub_u513_c tall.h5 tay5.h5) -# CLEANUP (N_twithub_u513_c tay5.h5) - - SETUP (N_twithub513_u10_c twithub513.h5 tay6.h5) - JAMTEST (N_twithub513_u10_c u10.txt tay6.h5 NONE --clobber) - CHECKFILE (N_twithub513_u10_c tall.h5 tay6.h5) -# CLEANUP (N_twithub513_u10_c tay6.h5) - SETUP (N_twithub513_u511_c twithub513.h5 tay7.h5) - JAMTEST (N_twithub513_u511_c u511.txt tay7.h5 NONE --clobber) - CHECKFILE (N_twithub513_u511_c tall.h5 tay7.h5) -# CLEANUP (N_twithub513_u511_c tay7.h5) - SETUP (N_twithub513_u512_c twithub513.h5 tay8.h5) - JAMTEST (N_twithub513_u512_c u512.txt tay8.h5 NONE --clobber) - CHECKFILE (N_twithub513_u512_c tall.h5 tay8.h5) -# CLEANUP (N_twithub513_u512_c tay8.h5) - SETUP (N_twithub513_u513_c twithub513.h5 tay9.h5) - JAMTEST (N_twithub513_u513_c u513.txt tay9.h5 NONE --clobber) - CHECKFILE (N_twithub513_u513_c tall.h5 tay9.h5) -# CLEANUP (N_twithub513_u513_c tay9.h5) + JAMTEST (tall_u10 u10.txt tall.h5 tall.h5 ta2.h5) + JAMTEST (tall_u511 u511.txt tall.h5 tall.h5 ta3.h5) + JAMTEST (tall_u512 u512.txt tall.h5 tall.h5 ta4.h5) + JAMTEST (tall_u513 u513.txt tall.h5 tall.h5 ta5.h5) + + JAMTEST_NONE (N_ta_u10 u10.txt tall.h5 tall.h5 ta6.h5) + JAMTEST_NONE (N_ta_u511 u511.txt tall.h5 tall.h5 ta7.h5) + JAMTEST_NONE (N_ta_u512 u512.txt tall.h5 tall.h5 ta8.h5) + JAMTEST_NONE (N_ta_u513 u513.txt tall.h5 tall.h5 ta9.h5) + + JAMTEST (twithub_u10 u10.txt twithub.h5 tall.h5 tax2.h5) + JAMTEST (twithub_u511 u511.txt twithub.h5 tall.h5 tax3.h5) + JAMTEST (twithub_u512 u512.txt twithub.h5 tall.h5 tax4.h5) + JAMTEST (twithub_u513 u513.txt twithub.h5 tall.h5 tax5.h5) + + JAMTEST (twithub513_u10 u10.txt twithub513.h5 tall.h5 tax6.h5) + JAMTEST (twithub513_u511 u511.txt twithub513.h5 tall.h5 tax7.h5) + JAMTEST (twithub513_u512 u512.txt twithub513.h5 tall.h5 tax8.h5) + JAMTEST (twithub513_u513 u513.txt twithub513.h5 tall.h5 tax9.h5) + + JAMTEST (twithub_u10_c u10.txt twithub.h5 tall.h5 taz2.h5 --clobber) + JAMTEST (twithub_u511_c u511.txt twithub.h5 tall.h5 taz3.h5 --clobber) + JAMTEST (twithub_u512_c u512.txt twithub.h5 tall.h5 taz4.h5 --clobber) + JAMTEST (twithub_u513_c u513.txt twithub.h5 tall.h5 taz5.h5 --clobber) + + JAMTEST (twithub513_u10_c u10.txt twithub513.h5 tall.h5 taz6.h5 --clobber) + JAMTEST (twithub513_u511_c u511.txt twithub513.h5 tall.h5 taz7.h5 --clobber) + JAMTEST (twithub513_u512_c u512.txt twithub513.h5 tall.h5 taz8.h5 --clobber) + JAMTEST (twithub513_u513_c u513.txt twithub513.h5 tall.h5 taz9.h5 --clobber) + + JAMTEST_NONE (N_twithub_u10_c u10.txt tall.h5 twithub.h5 tay2.h5 --clobber) + JAMTEST_NONE (N_twithub_u511_c u511.txt tall.h5 twithub.h5 tay3.h5 --clobber) + JAMTEST_NONE (N_twithub_u512_c u512.txt tall.h5 twithub.h5 tay4.h5 --clobber) + JAMTEST_NONE (N_twithub_u513_c u513.txt tall.h5 twithub.h5 tay5.h5 --clobber) + + JAMTEST_NONE (N_twithub513_u10_c u10.txt tall.h5 twithub513.h5 tay6.h5 --clobber) + JAMTEST_NONE (N_twithub513_u511_c u511.txt tall.h5 twithub513.h5 tay7.h5 --clobber) + JAMTEST_NONE (N_twithub513_u512_c u512.txt tall.h5 twithub513.h5 tay8.h5 --clobber) + JAMTEST_NONE (N_twithub513_u513_c u513.txt tall.h5 twithub513.h5 tay9.h5 --clobber) #------------------------------- # Testing h5unjam @@ -496,32 +468,14 @@ IF (BUILD_TESTING) # help page TEST_H5UNJAM_OUTPUT(h5unjam-help 0 -h) - SETUP (twithub_tall twithub.h5 tai1.h5) - UNJAMTEST (twithub_tall tai1.h5 o10.txt taa1.h5) - CHECKFILE (twithub_tall tall.h5 taa1.h5) -# CLEANUP (twithub_tall taa1.h5 tai1.h5 o10.txt) - SETUP (twithub513_tall twithub513.h5 tai2.h5) - UNJAMTEST (twithub513_tall tai2.h5 o512.txt taa2.h5) - CHECKFILE (twithub513_tall tall.h5 taa2.h5) -# CLEANUP (twithub513_tall taa2.h5 tai2.h5 o512.txt) - - SETUP (N_twithub_tall twithub.h5 tai3.h5) - UNJAMTEST (N_twithub_tall tai3.h5 NONE taa3.h5) - CHECKFILE (N_twithub_tall tall.h5 taa3.h5) -# CLEANUP (N_twithub_tall taa3.h5 tai3.h5) - SETUP (N_twithub513_tall twithub513.h5 tai4.h5) - UNJAMTEST (N_twithub513_tall tai4.h5 NONE taa4.h5) - CHECKFILE (N_twithub513_tall tall.h5 taa4.h5) -# CLEANUP (N_twithub513_tall taa4.h5 tai4.h5) - - SETUP (D_twithub_tall twithub.h5 taj2.h5) - UNJAMTEST (D_twithub_tall taj2.h5 NONE tac2.h5 --delete) - CHECKFILE (D_twithub_tall tall.h5 tac2.h5) -# CLEANUP (D_twithub_tall tac2.h5 taj2.h5) - SETUP (D_twithub513_tall twithub513.h5 taj3.h5) - UNJAMTEST (D_twithub513_tall taj3.h5 NONE tac3.h5 --delete) - CHECKFILE (D_twithub513_tall tall.h5 tac3.h5) -# CLEANUP (D_twithub513_tall tac3.h5 taj3.h5) + UNJAMTEST (twithub_tall twithub.h5 tai1.h5 o10.txt tall.h5 taa1.h5) + UNJAMTEST (twithub513_tall twithub513.h5 tai2.h5 o512.txt tall.h5 taa2.h5) + + UNJAMTEST (N_twithub_tall twithub.h5 tai3.h5 NONE tall.h5 taa3.h5) + UNJAMTEST (N_twithub513_tall twithub513.h5 tai4.h5 NONE tall.h5 taa4.h5) + + UNJAMTEST (D_twithub_tall twithub.h5 taj2.h5 NONE tall.h5 tac2.h5 --delete) + UNJAMTEST (D_twithub513_tall twithub513.h5 taj3.h5 NONE tall.h5 tac3.h5 --delete) ENDIF (BUILD_TESTING) diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in index ff8b089..fd170fd 100644 --- a/tools/h5jam/Makefile.in +++ b/tools/h5jam/Makefile.in @@ -248,6 +248,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -299,7 +300,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/h5jam/testh5jam.sh.in b/tools/h5jam/testh5jam.sh.in index b2c6bec..86edbee 100644 --- a/tools/h5jam/testh5jam.sh.in +++ b/tools/h5jam/testh5jam.sh.in @@ -377,7 +377,7 @@ JAMTEST() { compare_orig="xxofile.h5" cleanup="$cleanup $compare_orig" else - # output goes to $4, compare ofile to ubfile + # output goes to $3, compare ofile to ubfile ofile="$3" compare_test="$ofile" compare_orig="$ifile" @@ -539,19 +539,22 @@ JAMTEST $TESTDIR/u513.txt $TESTDIR/tall.h5 ta5.h5 CHECKFILE $TESTDIR/tall.h5 ta5.h5 CLEANUP ta5.h5 -SETUP $TESTDIR/tall.h5 ta.h5 -JAMTEST $TESTDIR/u10.txt ta.h5 -CHECKFILE $TESTDIR/tall.h5 ta.h5 -SETUP $TESTDIR/tall.h5 ta.h5 -JAMTEST $TESTDIR/u511.txt ta.h5 -CHECKFILE $TESTDIR/tall.h5 ta.h5 -SETUP $TESTDIR/tall.h5 ta.h5 -JAMTEST $TESTDIR/u512.txt ta.h5 -CHECKFILE $TESTDIR/tall.h5 ta.h5 -SETUP $TESTDIR/tall.h5 ta.h5 -JAMTEST $TESTDIR/u513.txt ta.h5 -CHECKFILE $TESTDIR/tall.h5 ta.h5 -CLEANUP ta.h5 +SETUP $TESTDIR/tall.h5 ta6.h5 +JAMTEST $TESTDIR/u10.txt ta6.h5 +CHECKFILE $TESTDIR/tall.h5 ta6.h5 +CLEANUP ta6.h5 +SETUP $TESTDIR/tall.h5 ta7.h5 +JAMTEST $TESTDIR/u511.txt ta7.h5 +CHECKFILE $TESTDIR/tall.h5 ta7.h5 +CLEANUP ta7.h5 +SETUP $TESTDIR/tall.h5 ta8.h5 +JAMTEST $TESTDIR/u512.txt ta8.h5 +CHECKFILE $TESTDIR/tall.h5 ta8.h5 +CLEANUP ta8.h5 +SETUP $TESTDIR/tall.h5 ta9.h5 +JAMTEST $TESTDIR/u513.txt ta9.h5 +CHECKFILE $TESTDIR/tall.h5 ta9.h5 +CLEANUP ta9.h5 JAMTEST $TESTDIR/u10.txt $TESTDIR/twithub.h5 tax2.h5 CHECKFILE $TESTDIR/tall.h5 tax2.h5 diff --git a/tools/h5ls/CMakeLists.txt b/tools/h5ls/CMakeLists.txt index 5cce6cb..70943b5 100644 --- a/tools/h5ls/CMakeLists.txt +++ b/tools/h5ls/CMakeLists.txt @@ -145,10 +145,9 @@ IF (BUILD_TESTING) IF (NOT "${last_test}" STREQUAL "") SET_TESTS_PROPERTIES (H5LS-${resultfile} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5LS-${resultfile}") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5LS-clear-${resultfile}-objects + NAME H5LS-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/${resultfile}.out ./testfiles/${resultfile}.out.err ) @@ -163,7 +162,7 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=${resultfile}.ls" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5LS-${resultfile} PROPERTIES DEPENDS "H5LS-clear-${resultfile}-objects") + SET_TESTS_PROPERTIES (H5LS-${resultfile} PROPERTIES DEPENDS "H5LS-${resultfile}-clear-objects") ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_TEST file) diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in index 7aa4329..1861b03 100644 --- a/tools/h5ls/Makefile.in +++ b/tools/h5ls/Makefile.in @@ -228,6 +228,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -279,7 +280,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/h5repack/CMakeLists.txt b/tools/h5repack/CMakeLists.txt index 7166357..156f6d8 100644 --- a/tools/h5repack/CMakeLists.txt +++ b/tools/h5repack/CMakeLists.txt @@ -150,24 +150,23 @@ IF (BUILD_TESTING) IF (${testtype} STREQUAL "SKIP") IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5REPACK-${testname}-SKIPPED - COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} -i ${PROJECT_BINARY_DIR}/testfiles/${testfile} -o ${PROJECT_BINARY_DIR}/testfiles/out.${testfile}" + NAME H5REPACK_OLD-${testname}-SKIPPED + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} -i ${PROJECT_BINARY_DIR}/testfiles/${testfile} -o ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}" ) ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ELSE (${testtype} STREQUAL "SKIP") ADD_TEST ( - NAME H5REPACK-${testname} - COMMAND $<TARGET_FILE:h5repack> ${ARGN} -i ${PROJECT_BINARY_DIR}/testfiles/${testfile} -o ${PROJECT_BINARY_DIR}/testfiles/out.${testfile} + NAME H5REPACK_OLD-${testname} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} -i ${PROJECT_BINARY_DIR}/testfiles/${testfile} -o ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5REPACK-${testname} PROPERTIES DEPENDS ${last_test}) + SET_TESTS_PROPERTIES (H5REPACK_OLD-${testname} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") ADD_TEST ( - NAME H5REPACK-DIFF_${testname} - COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out.${testfile} + NAME H5REPACK_OLD-${testname}_DFF + COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) - SET_TESTS_PROPERTIES (H5REPACK-DIFF_${testname} PROPERTIES DEPENDS H5REPACK-${testname}) - SET (last_test "H5REPACK-DIFF_${testname}") + SET_TESTS_PROPERTIES (H5REPACK_OLD-${testname}_DFF PROPERTIES DEPENDS H5REPACK_OLD-${testname}) ENDIF (${testtype} STREQUAL "SKIP") ENDMACRO (ADD_H5_TEST_OLD) @@ -176,23 +175,22 @@ IF (BUILD_TESTING) IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( NAME H5REPACK-${testname}-SKIPPED - COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out.${testfile}" + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}" ) ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ELSE (${testtype} STREQUAL "SKIP") ADD_TEST ( NAME H5REPACK-${testname} - COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out.${testfile} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) IF (NOT "${last_test}" STREQUAL "") SET_TESTS_PROPERTIES (H5REPACK-${testname} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") ADD_TEST ( - NAME H5REPACK-DIFF_${testname} - COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out.${testfile} + NAME H5REPACK-${testname}_DFF + COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) - SET_TESTS_PROPERTIES (H5REPACK-DIFF_${testname} PROPERTIES DEPENDS H5REPACK-${testname}) - SET (last_test "H5REPACK-DIFF_${testname}") + SET_TESTS_PROPERTIES (H5REPACK-${testname}_DFF PROPERTIES DEPENDS H5REPACK-${testname}) ENDIF (${testtype} STREQUAL "SKIP") ENDMACRO (ADD_H5_TEST) @@ -200,22 +198,22 @@ IF (BUILD_TESTING) IF (${testtype} STREQUAL "SKIP") IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5REPACK-${testname}-SKIPPED - COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out.${resultfile}" + NAME H5REPACK_CMP-${testname}-SKIPPED + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}" ) ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ELSE (${testtype} STREQUAL "SKIP") # If using memchecker add tests without using scripts IF (HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST (NAME H5REPACK-${testname} COMMAND $<TARGET_FILE:h5repack> ${ARGN} testfiles/${resultfile} testfiles/out.${resultfile}) + ADD_TEST (NAME H5REPACK_CMP-${testname} COMMAND $<TARGET_FILE:h5repack> ${ARGN} testfiles/${resultfile} testfiles/out-${testname}.${resultfile}) ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5REPACK-${testname} + NAME H5REPACK_CMP-${testname} COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5repack>" - -D "TEST_ARGS:STRING=${ARGN};testfiles/${resultfile};testfiles/out.${resultfile}" + -D "TEST_ARGS:STRING=${ARGN};testfiles/${resultfile};testfiles/out-${testname}.${resultfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_OUTPUT=./testfiles/${resultfile}.out" + -D "TEST_OUTPUT=./testfiles/${resultfile}-${testname}.out" -D "TEST_EXPECT=${resultcode}" -D "TEST_FILTER:STRING=${testfilter}" -D "TEST_REFERENCE=testfiles/${resultfile}.ddl" @@ -223,9 +221,8 @@ IF (BUILD_TESTING) ) ENDIF (HDF5_ENABLE_USING_MEMCHECKER) IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5REPACK-${testname} PROPERTIES DEPENDS ${last_test}) + SET_TESTS_PROPERTIES (H5REPACK_CMP-${testname} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5REPACK-${testname}") ENDIF (${testtype} STREQUAL "SKIP") ENDMACRO (ADD_H5_CMP_TEST) @@ -234,28 +231,37 @@ IF (BUILD_TESTING) IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( NAME H5REPACK_VERIFY_LAYOUT-${testname}-SKIPPED - COMMAND ${CMAKE_COMMAND} -E echo "SKIP -d ${testdset} -pH ${PROJECT_BINARY_DIR}/testfiles/out.${resultfile}" + COMMAND ${CMAKE_COMMAND} -E echo "SKIP -d ${testdset} -pH ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}" ) ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ELSE (${testtype} STREQUAL "SKIP") IF (NOT HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST ( + NAME H5REPACK_VERIFY_LAYOUT-${testname} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5REPACK_VERIFY_LAYOUT-${testname} PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + ADD_TEST ( + NAME H5REPACK_VERIFY_LAYOUT-${testname}_DFF + COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + SET_TESTS_PROPERTIES (H5REPACK_VERIFY_LAYOUT-${testname}_DFF PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname}) IF (${resultcode} STREQUAL "0") ADD_TEST ( - NAME H5REPACK_VERIFY_LAYOUT-${testname} + NAME H5REPACK_VERIFY_LAYOUT-${testname}_DMP COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" - -D "TEST_ARGS:STRING=-d;${testdset};-pH;testfiles/out.${testfile}" + -D "TEST_ARGS:STRING=-d;${testdset};-pH;testfiles/out-${testname}.${testfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_OUTPUT=./testfiles/${testfile}-v.out" + -D "TEST_OUTPUT=./testfiles/${testfile}-${testname}-v.out" -D "TEST_EXPECT=${resultcode}" -D "TEST_FILTER:STRING=${testfilter}" -D "TEST_REFERENCE=${testfilter}" -P "${HDF5_RESOURCES_DIR}/grepTest.cmake" ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5REPACK_VERIFY_LAYOUT-${testname} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5REPACK_VERIFY_LAYOUT-${testname}") + SET_TESTS_PROPERTIES (H5REPACK_VERIFY_LAYOUT-${testname}_DMP PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname}_DFF) ELSE (${resultcode} STREQUAL "0") IF (${testfilter} STREQUAL "CHUNKED") SET (nottestfilter "(CONTIGUOUS|COMPACT)") @@ -267,21 +273,18 @@ IF (BUILD_TESTING) SET (nottestfilter "(CONTIGUOUS|CHUNK)") ENDIF (${testfilter} STREQUAL "COMPACT") ADD_TEST ( - NAME H5REPACK_VERIFY_LAYOUT_ALL-${testname} + NAME H5REPACK_VERIFY_LAYOUT-${testname}_DMP COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" - -D "TEST_ARGS:STRING=-pH;testfiles/out.${testfile}" + -D "TEST_ARGS:STRING=-pH;testfiles/out-${testname}.${testfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_OUTPUT=./testfiles/${testfile}-v.out" + -D "TEST_OUTPUT=./testfiles/${testfile}-${testname}-v.out" -D "TEST_EXPECT=${resultcode}" -D "TEST_FILTER:STRING=${nottestfilter}" -D "TEST_REFERENCE=${testfilter}" -P "${HDF5_RESOURCES_DIR}/grepTest.cmake" ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5REPACK_VERIFY_LAYOUT_ALL-${testname} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5REPACK_VERIFY_LAYOUT_ALL-${testname}") + SET_TESTS_PROPERTIES (H5REPACK_VERIFY_LAYOUT-${testname}_DMP PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname}_DFF) ENDIF (${resultcode} STREQUAL "0") ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) ENDIF (${testtype} STREQUAL "SKIP") @@ -289,25 +292,21 @@ IF (BUILD_TESTING) MACRO (ADD_H5_TEST_META testname testfile) ADD_TEST ( - NAME H5REPACK-${testname}_N - COMMAND $<TARGET_FILE:h5repack> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out_N.${testname}.h5 + NAME H5REPACK_META-${testname}_N + COMMAND $<TARGET_FILE:h5repack> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_N.${testname}.h5 ) IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5REPACK-${testname}_N PROPERTIES DEPENDS ${last_test}) + SET_TESTS_PROPERTIES (H5REPACK_META-${testname}_N PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") ADD_TEST ( - NAME H5REPACK-${testname}_M - COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out_M.${testname}.h5 + NAME H5REPACK_META-${testname}_M + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_M.${testname}.h5 ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5REPACK-${testname}_M PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - ADD_TEST (NAME H5REPACK-${testname} COMMAND ${CMAKE_COMMAND} -E compare_files ${PROJECT_BINARY_DIR}/testfiles/out_N.${testname}.h5 ${PROJECT_BINARY_DIR}/testfiles/out_M.${testname}.h5) - SET_TESTS_PROPERTIES (H5REPACK-${testname} PROPERTIES WILL_FAIL "true") - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5REPACK-${testname} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5REPACK-${testname}") + SET_TESTS_PROPERTIES (H5REPACK_META-${testname}_M PROPERTIES DEPENDS H5REPACK_META-${testname}_N) + + ADD_TEST (NAME H5REPACK_META-${testname} COMMAND ${CMAKE_COMMAND} -E compare_files ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_N.${testname}.h5 ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_M.${testname}.h5) + SET_TESTS_PROPERTIES (H5REPACK_META-${testname} PROPERTIES WILL_FAIL "true") + SET_TESTS_PROPERTIES (H5REPACK_META-${testname} PROPERTIES DEPENDS H5REPACK_META-${testname}_M) ENDMACRO (ADD_H5_TEST_META) ############################################################################## @@ -316,43 +315,158 @@ IF (BUILD_TESTING) ############################################################################## ############################################################################## + # -------------------------------------------------------------------- + # test file names + # -------------------------------------------------------------------- + SET (INFO_FILE testfiles/h5repack.info) + + SET (FILE0 h5repack_fill.h5) + SET (FILE1 h5repack_objs.h5) + SET (FILE2 h5repack_attr.h5) + SET (FILE3 h5repack_hlink.h5) + SET (FILE4 h5repack_layout.h5) + SET (FILE5 h5repack_early.h5) + SET (FILE7 h5repack_szip.h5) + SET (FILE8 h5repack_deflate.h5) + SET (FILE9 h5repack_shuffle.h5) + SET (FILE10 h5repack_fletcher.h5) + SET (FILE11 h5repack_filters.h5) + SET (FILE12 h5repack_nbit.h5) + SET (FILE13 h5repack_soffset.h5) + SET (FILE14 h5repack_layouto.h5 ) # A file with an older version of the layout message (copy of test/tlayouto.h5) + SET (FILE15 h5repack_named_dtypes.h5) + SET (FILE16 tfamily%05d.h5) # located in common testfiles folder + SET (FILE18 h5repack_layout2.h5) + SET (FILE_REF h5repack_refs.h5) + SET (FILE_ATTR_REF h5repack_attr_refs.h5) + # Remove any output file left over from previous test run ADD_TEST ( NAME H5REPACK-clearall-objects COMMAND ${CMAKE_COMMAND} -E remove - ./testfiles/h5repack_filters.h5.out - ./testfiles/h5repack_filters.h5.out.err - ./testfiles/h5repack_layout.h5-v.out - ./testfiles/h5repack_layout.h5-v.out.err - ./testfiles/h5repack_layout2.h5-v.out - ./testfiles/h5repack_layout2.h5-v.out.err - ./testfiles/h5repack_layout3.h5-v.out - ./testfiles/h5repack_layout3.h5-v.out.err - ./testfiles/out.tfamily%05d.h5 - ./testfiles/out.h5diff_attr1.h5 - ./testfiles/out.h5repack_attr.h5 - ./testfiles/out.h5repack_attr_refs.h5 - ./testfiles/out.h5repack_deflate.h5 - ./testfiles/out.h5repack_early.h5 - ./testfiles/out.h5repack_fill.h5 - ./testfiles/out.h5repack_filters.h5 - ./testfiles/out.h5repack_fletcher.h5 - ./testfiles/out.h5repack_hlink.h5 - ./testfiles/out.h5repack_layout.h5 - ./testfiles/out.h5repack_layouto.h5 - ./testfiles/out.h5repack_layout2.h5 - ./testfiles/out.h5repack_layout3.h5 - ./testfiles/out.h5repack_named_dtypes.h5 - ./testfiles/out.h5repack_nbit.h5 - ./testfiles/out.h5repack_objs.h5 - ./testfiles/out.h5repack_refs.h5 - ./testfiles/out.h5repack_shuffle.h5 - ./testfiles/out.h5repack_soffset.h5 - ./testfiles/out_M.meta_short.h5 - ./testfiles/out_N.meta_short.h5 - ./testfiles/out_M.meta_long.h5 - ./testfiles/out_N.meta_long.h5 + ./testfiles/h5repack_filters.h5-gzip_verbose_filters.out + ./testfiles/h5repack_filters.h5-gzip_verbose_filters.out.err + ./testfiles/h5repack_layout.h5-chunk_18x13-v.out + ./testfiles/h5repack_layout.h5-chunk_18x13-v.out.err + ./testfiles/h5repack_layout.h5-chunk_20x10-v.out + ./testfiles/h5repack_layout.h5-chunk_20x10-v.out.err + ./testfiles/h5repack_layout.h5-chunk_compa-v.out + ./testfiles/h5repack_layout.h5-chunk_compa-v.out.err + ./testfiles/h5repack_layout.h5-chunk_conti-v.out + ./testfiles/h5repack_layout.h5-chunk_conti-v.out.err + ./testfiles/h5repack_layout.h5-compa-v.out + ./testfiles/h5repack_layout.h5-compa-v.out.err + ./testfiles/h5repack_layout.h5-conti-v.out + ./testfiles/h5repack_layout.h5-conti-v.out.err + ./testfiles/h5repack_layout.h5-dset2_chunk_20x10-v.out + ./testfiles/h5repack_layout.h5-dset2_chunk_20x10-v.out.err + ./testfiles/h5repack_layout.h5-dset2_compa-v.out + ./testfiles/h5repack_layout.h5-dset2_compa-v.out.err + ./testfiles/h5repack_layout.h5-dset2_conti-v.out + ./testfiles/h5repack_layout.h5-dset2_conti-v.out.err + ./testfiles/h5repack_layout.h5-dset_compa_chunk-v.out + ./testfiles/h5repack_layout.h5-dset_compa_chunk-v.out.err + ./testfiles/h5repack_layout.h5-dset_compa_compa-v.out + ./testfiles/h5repack_layout.h5-dset_compa_compa-v.out.err + ./testfiles/h5repack_layout.h5-dset_compa_conti-v.out + ./testfiles/h5repack_layout.h5-dset_compa_conti-v.out.err + ./testfiles/h5repack_layout.h5-dset_conti_chunk-v.out + ./testfiles/h5repack_layout.h5-dset_conti_chunk-v.out.err + ./testfiles/h5repack_layout.h5-dset_conti_compa-v.out + ./testfiles/h5repack_layout.h5-dset_conti_compa-v.out.err + ./testfiles/h5repack_layout.h5-dset_conti_conti-v.out + ./testfiles/h5repack_layout.h5-dset_conti_conti-v.out.err + ./testfiles/h5repack_layout.h5-layout_long_switches-v.out + ./testfiles/h5repack_layout.h5-layout_long_switches-v.out.err + ./testfiles/h5repack_layout.h5-layout_short_switches-v.out + ./testfiles/h5repack_layout.h5-layout_short_switches-v.out.err + ./testfiles/h5repack_layout2.h5-contig_small_compa-v.out + ./testfiles/h5repack_layout2.h5-contig_small_compa-v.out.err + ./testfiles/h5repack_layout2.h5-contig_small_fixed_compa-v.out + ./testfiles/h5repack_layout2.h5-contig_small_fixed_compa-v.out.err + ./testfiles/h5repack_layout3.h5-chunk2chunk-v.out + ./testfiles/h5repack_layout3.h5-chunk2chunk-v.out.err + ./testfiles/h5repack_layout3.h5-chunk2compa-v.out + ./testfiles/h5repack_layout3.h5-chunk2compa-v.out.err + ./testfiles/h5repack_layout3.h5-chunk2conti-v.out + ./testfiles/h5repack_layout3.h5-chunk2conti-v.out.err + ./testfiles/h5repack_layout3.h5-error1-v.out + ./testfiles/h5repack_layout3.h5-error1-v.out.err + ./testfiles/h5repack_layout3.h5-error2-v.out + ./testfiles/h5repack_layout3.h5-error2-v.out.err + ./testfiles/h5repack_layout3.h5-error3-v.out + ./testfiles/h5repack_layout3.h5-error3-v.out.err + ./testfiles/out-family.tfamily%05d.h5 + ./testfiles/out-HDFFV-7840.h5diff_attr1.h5 + ./testfiles/out-attr.h5repack_attr.h5 + ./testfiles/out-native_attr.h5repack_attr.h5 + ./testfiles/out-HDFFV-5932.h5repack_attr_refs.h5 + ./testfiles/out-deflate_copy.h5repack_deflate.h5 + ./testfiles/out-deflate_remove.h5repack_deflate.h5 + ./testfiles/out-early.h5repack_early.h5 + ./testfiles/out-fill.h5repack_fill.h5 + ./testfiles/out-native_fill.h5repack_fill.h5 + ./testfiles/out-gzip_verbose_filters.h5repack_filters.h5 + ./testfiles/out-fletcher_copy.h5repack_fletcher.h5 + ./testfiles/out-fletcher_remove.h5repack_fletcher.h5 + ./testfiles/out-hlink.h5repack_hlink.h5 + ./testfiles/out-chunk_18x13.h5repack_layout.h5 + ./testfiles/out-chunk_20x10.h5repack_layout.h5 + ./testfiles/out-chunk_compa.h5repack_layout.h5 + ./testfiles/out-chunk_conti.h5repack_layout.h5 + ./testfiles/out-compa.h5repack_layout.h5 + ./testfiles/out-conti.h5repack_layout.h5 + ./testfiles/out-deflate_file.h5repack_layout.h5 + ./testfiles/out-deflate_limit.h5repack_layout.h5 + ./testfiles/out-dset2_chunk_20x10.h5repack_layout.h5 + ./testfiles/out-dset2_compa.h5repack_layout.h5 + ./testfiles/out-dset2_conti.h5repack_layout.h5 + ./testfiles/out-dset_compa_chunk.h5repack_layout.h5 + ./testfiles/out-dset_compa_compa.h5repack_layout.h5 + ./testfiles/out-dset_compa_conti.h5repack_layout.h5 + ./testfiles/out-dset_conti_chunk.h5repack_layout.h5 + ./testfiles/out-dset_conti_compa.h5repack_layout.h5 + ./testfiles/out-dset_conti_conti.h5repack_layout.h5 + ./testfiles/out-fletcher_all.h5repack_layout.h5 + ./testfiles/out-fletcher_individual.h5repack_layout.h5 + ./testfiles/out-global_filters.h5repack_layout.h5 + ./testfiles/out-gzip_all.h5repack_layout.h5 + ./testfiles/out-gzip_individual.h5repack_layout.h5 + ./testfiles/out-layout.h5repack_layout.h5 + ./testfiles/out-layout_long_switches.h5repack_layout.h5 + ./testfiles/out-layout_short_switches.h5repack_layout.h5 + ./testfiles/out-old_style_layout_short_switches.h5repack_layout.h5 + ./testfiles/out-shuffle_all.h5repack_layout.h5 + ./testfiles/out-shuffle_individual.h5repack_layout.h5 + ./testfiles/out-upgrade_layout.h5repack_layouto.h5 + ./testfiles/out-contig_small_compa.h5repack_layout2.h5 + ./testfiles/out-contig_small_fixed_compa.h5repack_layout2.h5 + ./testfiles/out-chunk2chunk.h5repack_layout3.h5 + ./testfiles/out-chunk2compa.h5repack_layout3.h5 + ./testfiles/out-chunk2conti.h5repack_layout3.h5 + ./testfiles/out-error1.h5repack_layout3.h5 + ./testfiles/out-error2.h5repack_layout3.h5 + ./testfiles/out-error3.h5repack_layout3.h5 + ./testfiles/out-error4.h5repack_layout3.h5 + ./testfiles/out-committed_dt.h5repack_named_dtypes.h5 + ./testfiles/out-nbit_add.h5repack_nbit.h5 + ./testfiles/out-nbit_copy.h5repack_nbit.h5 + ./testfiles/out-nbit_remove.h5repack_nbit.h5 + ./testfiles/out-add_alignment.h5repack_objs.h5 + ./testfiles/out-add_userblock.h5repack_objs.h5 + ./testfiles/out-objs.h5repack_objs.h5 + ./testfiles/out-gt_mallocsize.h5repack_objs.h5 + ./testfiles/out-bug1814.h5repack_refs.h5 + ./testfiles/out-shuffle_copy.h5repack_shuffle.h5 + ./testfiles/out-shuffle_remove.h5repack_shuffle.h5 + ./testfiles/out-scale_add.h5repack_soffset.h5 + ./testfiles/out-scale_copy.h5repack_soffset.h5 + ./testfiles/out-scale_remove.h5repack_soffset.h5 + ./testfiles/out-meta_short_M.meta_short.h5 + ./testfiles/out-meta_short_N.meta_short.h5 + ./testfiles/out-meta_long_M.meta_long.h5 + ./testfiles/out-meta_long_N.meta_long.h5 # from the h5repacktst h5repack_attr.h5 h5repack_attr_out.h5 @@ -398,32 +512,6 @@ IF (BUILD_TESTING) IF (NOT "${last_test}" STREQUAL "") SET_TESTS_PROPERTIES (H5REPACK-clearall-objects PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5REPACK-clearall-objects") - - # -------------------------------------------------------------------- - # test file names - # -------------------------------------------------------------------- - SET (INFO_FILE testfiles/h5repack.info) - - SET (FILE0 h5repack_fill.h5) - SET (FILE1 h5repack_objs.h5) - SET (FILE2 h5repack_attr.h5) - SET (FILE3 h5repack_hlink.h5) - SET (FILE4 h5repack_layout.h5) - SET (FILE5 h5repack_early.h5) - SET (FILE7 h5repack_szip.h5) - SET (FILE8 h5repack_deflate.h5) - SET (FILE9 h5repack_shuffle.h5) - SET (FILE10 h5repack_fletcher.h5) - SET (FILE11 h5repack_filters.h5) - SET (FILE12 h5repack_nbit.h5) - SET (FILE13 h5repack_soffset.h5) - SET (FILE14 h5repack_layouto.h5 ) # A file with an older version of the layout message (copy of test/tlayouto.h5) - SET (FILE15 h5repack_named_dtypes.h5) - SET (FILE16 tfamily%05d.h5) # located in common testfiles folder - SET (FILE18 h5repack_layout2.h5) - SET (FILE_REF h5repack_refs.h5) - SET (FILE_ATTR_REF h5repack_attr_refs.h5) ADD_TEST (NAME H5REPACK-testh5repack_detect_szip COMMAND $<TARGET_FILE:testh5repack_detect_szip>) IF (HDF5_ENABLE_SZIP_SUPPORT) @@ -438,15 +526,10 @@ IF (BUILD_TESTING) SET (passRegex "no") SET_TESTS_PROPERTIES (H5REPACK-testh5repack_detect_szip PROPERTIES PASS_REGULAR_EXPRESSION "no") ENDIF (HDF5_ENABLE_SZIP_SUPPORT) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5REPACK-testh5repack_detect_szip PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5REPACK-testh5repack_detect_szip") + SET_TESTS_PROPERTIES (H5REPACK-testh5repack_detect_szip PROPERTIES DEPENDS H5REPACK-clearall-objects) ADD_TEST (NAME H5REPACK-h5repacktest COMMAND $<TARGET_FILE:h5repacktest>) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5REPACK-h5repacktest PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5REPACK-h5repacktest PROPERTIES DEPENDS H5REPACK-testh5repack_detect_szip) SET (last_test "H5REPACK-h5repacktest") # @@ -740,47 +823,29 @@ IF (BUILD_TESTING) ######################################################### # layout options (these files have no filters) ######################################################### - ADD_H5_TEST (dset2_chunk_20x10 "TEST" ${FILE4} --layout=dset2:CHUNK=20x10) - ADD_H5_VERIFY_TEST (dset2_chunk_20x10 "TEST" 0 ${FILE4} dset2 CHUNKED) - ADD_H5_TEST (chunk_20x10 "TEST" ${FILE4} -l CHUNK=20x10) - ADD_H5_VERIFY_TEST (chunk_20x10 "TEST" 1 ${FILE4} null CHUNKED) - ADD_H5_TEST (dset2_conti "TEST" ${FILE4} -l dset2:CONTI) - ADD_H5_VERIFY_TEST (dset2_conti "TEST" 0 ${FILE4} dset2 CONTIGUOUS) - ADD_H5_TEST (conti "TEST" ${FILE4} -l CONTI) - ADD_H5_VERIFY_TEST (conti "TEST" 1 ${FILE4} null CONTIGUOUS) - ADD_H5_TEST (dset2_compa "TEST" ${FILE4} -l dset2:COMPA) - ADD_H5_VERIFY_TEST (dset2_compa "TEST" 0 ${FILE4} dset2 COMPACT) - ADD_H5_TEST (compa "TEST" ${FILE4} -l COMPA) - ADD_H5_VERIFY_TEST (compa "TEST" 1 ${FILE4} null COMPACT) + ADD_H5_VERIFY_TEST (dset2_chunk_20x10 "TEST" 0 ${FILE4} dset2 CHUNKED --layout=dset2:CHUNK=20x10) + ADD_H5_VERIFY_TEST (chunk_20x10 "TEST" 1 ${FILE4} null CHUNKED -l CHUNK=20x10) + ADD_H5_VERIFY_TEST (dset2_conti "TEST" 0 ${FILE4} dset2 CONTIGUOUS -l dset2:CONTI) + ADD_H5_VERIFY_TEST (conti "TEST" 1 ${FILE4} null CONTIGUOUS -l CONTI) + ADD_H5_VERIFY_TEST (dset2_compa "TEST" 0 ${FILE4} dset2 COMPACT -l dset2:COMPA) + ADD_H5_VERIFY_TEST (compa "TEST" 1 ${FILE4} null COMPACT -l COMPA) ################################################################ # layout conversions (file has no filters) ############################################################### - ADD_H5_TEST (dset_compa_conti "TEST" ${FILE4} -l dset_compact:CONTI) - ADD_H5_VERIFY_TEST (dset_compa_conti "TEST" 0 ${FILE4} dset_compact CONTIGUOUS) - ADD_H5_TEST (dset_compa_chunk "TEST" ${FILE4} -l dset_compact:CHUNK=2x5) - ADD_H5_VERIFY_TEST (dset_compa_chunk "TEST" 0 ${FILE4} dset_compact CHUNKED) - ADD_H5_TEST (dset_compa_compa "TEST" ${FILE4} -l dset_compact:COMPA) - ADD_H5_VERIFY_TEST (dset_compa_compa "TEST" 0 ${FILE4} dset_compact COMPACT) - ADD_H5_TEST (dset_conti_compa "TEST" ${FILE4} -l dset_contiguous:COMPA) - ADD_H5_VERIFY_TEST (dset_conti_compa "TEST" 0 ${FILE4} dset_contiguous COMPACT) - ADD_H5_TEST (dset_conti_chunk "TEST" ${FILE4} -l dset_contiguous:CHUNK=3x6) - ADD_H5_VERIFY_TEST (dset_conti_chunk "TEST" 0 ${FILE4} dset_contiguous CHUNKED) - ADD_H5_TEST (dset_conti_conti "TEST" ${FILE4} -l dset_contiguous:CONTI) - ADD_H5_VERIFY_TEST (dset_conti_conti "TEST" 0 ${FILE4} dset_contiguous CONTIGUOUS) - ADD_H5_TEST (chunk_compa "TEST" ${FILE4} -l dset_chunk:COMPA) - ADD_H5_VERIFY_TEST (chunk_compa "TEST" 0 ${FILE4} dset_chunk COMPACT) - ADD_H5_TEST (chunk_conti "TEST" ${FILE4} -l dset_chunk:CONTI) - ADD_H5_VERIFY_TEST (chunk_conti "TEST" 0 ${FILE4} dset_chunk CONTIGUOUS) - ADD_H5_TEST (chunk_18x13 "TEST" ${FILE4} -l dset_chunk:CHUNK=18x13) - ADD_H5_VERIFY_TEST (chunk_18x13 "TEST" 0 ${FILE4} dset_chunk CHUNKED) + ADD_H5_VERIFY_TEST (dset_compa_conti "TEST" 0 ${FILE4} dset_compact CONTIGUOUS -l dset_compact:CONTI) + ADD_H5_VERIFY_TEST (dset_compa_chunk "TEST" 0 ${FILE4} dset_compact CHUNKED -l dset_compact:CHUNK=2x5) + ADD_H5_VERIFY_TEST (dset_compa_compa "TEST" 0 ${FILE4} dset_compact COMPACT -l dset_compact:COMPA) + ADD_H5_VERIFY_TEST (dset_conti_compa "TEST" 0 ${FILE4} dset_contiguous COMPACT -l dset_contiguous:COMPA) + ADD_H5_VERIFY_TEST (dset_conti_chunk "TEST" 0 ${FILE4} dset_contiguous CHUNKED -l dset_contiguous:CHUNK=3x6) + ADD_H5_VERIFY_TEST (dset_conti_conti "TEST" 0 ${FILE4} dset_contiguous CONTIGUOUS -l dset_contiguous:CONTI) + ADD_H5_VERIFY_TEST (chunk_compa "TEST" 0 ${FILE4} dset_chunk COMPACT -l dset_chunk:COMPA) + ADD_H5_VERIFY_TEST (chunk_conti "TEST" 0 ${FILE4} dset_chunk CONTIGUOUS -l dset_chunk:CONTI) + ADD_H5_VERIFY_TEST (chunk_18x13 "TEST" 0 ${FILE4} dset_chunk CHUNKED -l dset_chunk:CHUNK=18x13) # test convert small size dataset ( < 1k) to compact layout without -m - ADD_H5_TEST (contig_small_compa "TEST" ${FILE18} -l contig_small:COMPA) - ADD_H5_VERIFY_TEST (contig_small_compa "TEST" 0 ${FILE18} contig_small COMPACT) - - ADD_H5_TEST (contig_small_fixed_compa "TEST" ${FILE18} -l chunked_small_fixed:COMPA) - ADD_H5_VERIFY_TEST (contig_small_fixed_compa "TEST" 0 ${FILE18} chunked_small_fixed COMPACT) + ADD_H5_VERIFY_TEST (contig_small_compa "TEST" 0 ${FILE18} contig_small COMPACT -l contig_small:COMPA) + ADD_H5_VERIFY_TEST (contig_small_fixed_compa "TEST" 0 ${FILE18} chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA) #--------------------------------------------------------------------------- # Test file contains chunked datasets (need multiple dsets) with @@ -788,17 +853,14 @@ IF (BUILD_TESTING) # Use first dset to test. #--------------------------------------------------------------------------- # chunk to chunk - specify chunk dim bigger than any current dim -ADD_H5_TEST (chunk2chunk "TEST" h5repack_layout3.h5 -l chunk_unlimit1:CHUNK=100x300) -ADD_H5_VERIFY_TEST (chunk2chunk "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUNK) +ADD_H5_VERIFY_TEST (chunk2chunk "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300) # chunk to contiguous -ADD_H5_TEST (chunk2conti "TEST" h5repack_layout3.h5 -l chunk_unlimit1:CONTI) -ADD_H5_VERIFY_TEST (chunk2conti "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CONTI) +ADD_H5_VERIFY_TEST (chunk2conti "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI) # chunk to compact - convert big dataset (should be > 64k) for this purpose, # should remain as original layout (chunk) -ADD_H5_TEST (chunk2compa "TEST" h5repack_layout3.h5 -l chunk_unlimit1:COMPA) -ADD_H5_VERIFY_TEST (chunk2compa "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUNK) +ADD_H5_VERIFY_TEST (chunk2compa "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA) #-------------------------------------------------------------------------- # Test -f for some specific cases. Chunked dataset with unlimited max dims. @@ -808,16 +870,13 @@ ADD_H5_VERIFY_TEST (chunk2compa "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUN # - should not change max dims from unlimit # chunk dim is bigger than dataset dim. ( dset size < 64k ) -ADD_H5_TEST (error1 "TEST" h5repack_layout3.h5 -f chunk_unlimit1:NONE) -ADD_H5_VERIFY_TEST (error1 "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED) +ADD_H5_VERIFY_TEST (error1 "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED -f chunk_unlimit1:NONE) # chunk dim is bigger than dataset dim. ( dset size > 64k ) -ADD_H5_TEST (error2 "TEST" h5repack_layout3.h5 -f chunk_unlimit2:NONE) -ADD_H5_VERIFY_TEST (error2 "TEST" 0 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED) +ADD_H5_VERIFY_TEST (error2 "TEST" 0 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED -f chunk_unlimit2:NONE) # chunk dims are smaller than dataset dims. ( dset size < 64k ) -ADD_H5_TEST (error3 "TEST" h5repack_layout3.h5 -f chunk_unlimit3:NONE) -ADD_H5_VERIFY_TEST (error3 "TEST" 0 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED) +ADD_H5_VERIFY_TEST (error3 "TEST" 0 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f chunk_unlimit3:NONE) # file input - should not fail ADD_H5_TEST (error4 "TEST" h5repack_layout3.h5 -f NONE) @@ -829,22 +888,20 @@ ADD_H5_TEST (error4 "TEST" h5repack_layout3.h5 -f NONE) ADD_H5_TEST (native_attr "TEST" ${FILE2} -n) # latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters) - SET (arg ${FILE4} --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]) + SET (arg --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]) SET (TESTTYPE "TEST") IF (NOT USE_FILTER_DEFLATE) SET (TESTTYPE "SKIP") ENDIF (NOT USE_FILTER_DEFLATE) - ADD_H5_TEST (layout_long_switches ${TESTTYPE} ${arg}) - ADD_H5_VERIFY_TEST (layout_long_switches ${TESTTYPE} 1 ${FILE4} null CHUNKED) + ADD_H5_VERIFY_TEST (layout_long_switches ${TESTTYPE} 1 ${FILE4} null CHUNKED ${arg}) # latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters) - SET (arg ${FILE4} -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]) + SET (arg -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]) SET (TESTTYPE "TEST") IF (NOT USE_FILTER_DEFLATE) SET (TESTTYPE "SKIP") ENDIF (NOT USE_FILTER_DEFLATE) - ADD_H5_TEST (layout_short_switches ${TESTTYPE} ${arg}) - ADD_H5_VERIFY_TEST (layout_short_switches ${TESTTYPE} 1 ${FILE4} null CHUNKED) + ADD_H5_VERIFY_TEST (layout_short_switches ${TESTTYPE} 1 ${FILE4} null CHUNKED ${arg}) # several global filters SET (arg ${FILE4} --filter GZIP=1 --filter SHUF) diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index 389339f..fe3a11c 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -248,6 +248,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -299,7 +300,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in index a732ffb..dc90426 100644 --- a/tools/h5repack/h5repack.sh.in +++ b/tools/h5repack/h5repack.sh.in @@ -189,7 +189,9 @@ SKIP() { DIFFTEST() { VERIFY h5diff output $@ - $RUNSERIAL $H5DIFF_BIN -q "$@" + ( + $RUNSERIAL $H5DIFF_BIN -q "$@" + ) RET=$? if [ $RET != 0 ] ; then echo "*FAILED*" @@ -208,44 +210,57 @@ DIFFTEST() TOOLTEST() { echo $@ - TOOLTEST_MAIN $@ - outfile=$TESTDIR/out.$1 - rm -f $outfile -} + infile=$TESTDIR/$2 + outfile=$TESTDIR/out-$1.$2 + shift + shift -# TOOLTEST main function, doesn't delete $output file -TOOLTEST_MAIN() -{ # Run test. TESTING $H5REPACK $@ - - infile=$TESTDIR/$1 - outfile=$TESTDIR/out.$1 - shift - $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ( + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) RET=$? if [ $RET != 0 ] ; then - echo "*FAILED*" - nerrors="`expr $nerrors + 1`" + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" else - echo " PASSED" - DIFFTEST $infile $outfile + echo " PASSED" + DIFFTEST $infile $outfile fi + rm -f $outfile } #------------------------------------------ # Verifying layouts of a dataset VERIFY_LAYOUT_DSET() { - outfile=$TESTDIR/out.$1 - layoutfile=$TESTDIR/layout.$1 - dset=$2 - expectlayout=$3 + layoutfile=$TESTDIR/layout-$1.$2 + dset=$3 + expectlayout=$4 + infile=$TESTDIR/$2 + outfile=$TESTDIR/out-$1.$2 + shift + shift + shift + shift + + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi #--------------------------------- # check the layout from a dataset VERIFY "a dataset layout" - $RUNSERIAL $H5DUMP_BIN -d $dset -pH $outfile > $layoutfile + ( + $RUNSERIAL $H5DUMP_BIN -d $dset -pH $outfile > $layoutfile + ) $GREP $expectlayout $layoutfile > /dev/null if [ $? -eq 0 ]; then echo " PASSED" @@ -262,17 +277,35 @@ VERIFY_LAYOUT_DSET() # Verifying layouts from entire file VERIFY_LAYOUT_ALL() { - outfile=$TESTDIR/out.$1 - layoutfile=$TESTDIR/layout.$1 - expectlayout=$2 + outfile=$TESTDIR/out-$1.$2 + layoutfile=$TESTDIR/layout-$1.$2 + expectlayout=$3 + shift + shift + shift + + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi + #--------------------------------- # check the layout from a dataset # check if the other layouts still exsit VERIFY "layouts" + ( # if CONTIGUOUS if [ $expectlayout = "CONTIGUOUS" ]; then - $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile + TESTING $H5DUMP_BIN -pH $outfile + ( + $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile + ) $GREP "COMPACT" $layoutfile > /dev/null if [ $? -eq 0 ]; then echo " FAILED" @@ -287,7 +320,10 @@ VERIFY_LAYOUT_ALL() else # if COMPACT if [ $expectlayout = "COMPACT" ]; then - $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile + TESTING $H5DUMP_BIN -pH $outfile + ( + $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile + ) $GREP "CHUNKED" $layoutfile > /dev/null if [ $? -eq 0 ]; then echo " FAILED" @@ -302,7 +338,10 @@ VERIFY_LAYOUT_ALL() else # if CHUNKED if [ $expectlayout = "CHUNKED" ]; then - $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile + TESTING $H5DUMP_BIN -pH $outfile + ( + $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile + ) $GREP "CONTIGUOUS" $layoutfile > /dev/null if [ $? -eq 0 ]; then echo " FAILED" @@ -317,6 +356,7 @@ VERIFY_LAYOUT_ALL() fi fi fi + ) # clean up tmp files rm -f $outfile @@ -327,13 +367,16 @@ VERIFY_LAYOUT_ALL() # TOOLTEST0() { + infile=$TESTDIR/$2 + outfile=$TESTDIR/out-$1.$2 + shift + shift + # Run test. TESTING $H5REPACK $@ - - infile=$TESTDIR/$1 - outfile=$TESTDIR/out.$1 - shift - $RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile "$@" + ( + $RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile "$@" + ) RET=$? if [ $RET != 0 ] ; then echo "*FAILED*" @@ -351,13 +394,16 @@ TOOLTEST0() # TOOLTEST1() { + infile=$TESTDIR/$2 + outfile=$TESTDIR/out-$1.$2 + shift + shift + # Run test. TESTING $H5REPACK $@ - - infile=$TESTDIR/$1 - outfile=$TESTDIR/out.$1 - shift - $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ( + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) RET=$? if [ $RET != 0 ] ; then echo "*FAILED*" @@ -374,16 +420,20 @@ TOOLTEST1() # TOOLTESTV() { - # Run test. - TESTING $H5REPACK $@ - expect="$TESTDIR/$1.ddl" - actual="$TESTDIR/`basename $1 .ddl`.out" - actual_err="$TESTDIR/`basename $1 .ddl`.err" + expect="$TESTDIR/$2.ddl" + actual="$TESTDIR/`basename $2 .ddl`.out" + actual_err="$TESTDIR/`basename $2 .ddl`.err" - infile=$TESTDIR/$1 - outfile=$TESTDIR/out.$1 + infile=$TESTDIR/$2 + outfile=$TESTDIR/out-$1.$2 + shift shift - $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile >$actual 2>$actual_err + + # Run test. + TESTING $H5REPACK $@ + ( + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) >$actual 2>$actual_err RET=$? if [ $RET != 0 ] ; then echo "*FAILED*" @@ -427,17 +477,41 @@ TOOLTESTV() # Verify the output file of second run is larger than the one of 1st run. TOOLTEST_META() { - input_file=$1 - outfile="$TESTDIR/out.$1" + infile=$TESTDIR/$2 + outfile=$TESTDIR/out-$1.$2 + shift + shift - # Use TOOLTEST_MAIN to run because it does not remove the output file. - # 1st run, without metadata option - TOOLTEST_MAIN $1 + # Run test. + TESTING $H5REPACK $@ + ( + $RUNSERIAL $H5REPACK_BIN $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi # get the size of the first output file size1=`wc -c $outfile | cut -d' ' -f1` # 2nd run with metadata option - TOOLTEST_MAIN $* + # Run test. + TESTING $H5REPACK $@ + ( + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi # get the size of the second output file size2=`wc -c $outfile | cut -d' ' -f1` @@ -492,12 +566,12 @@ fi COPY_TESTFILES_TO_TESTDIR # copy files (these files have no filters) -TOOLTEST h5repack_fill.h5 -TOOLTEST h5repack_objs.h5 -TOOLTEST h5repack_attr.h5 -TOOLTEST h5repack_hlink.h5 -TOOLTEST h5repack_layout.h5 -TOOLTEST h5repack_early.h5 +TOOLTEST fill h5repack_fill.h5 +TOOLTEST objs h5repack_objs.h5 +TOOLTEST attr h5repack_attr.h5 +TOOLTEST hlink h5repack_hlink.h5 +TOOLTEST layout h5repack_layout.h5 +TOOLTEST early h5repack_early.h5 # use h5repack_layout.h5 to write some filters (this file has no filters) @@ -507,7 +581,7 @@ arg="h5repack_layout.h5 -f dset1:GZIP=1 -l dset1:CHUNK=20x10" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST gzip_individual $arg fi # gzip for all @@ -515,7 +589,7 @@ arg="h5repack_layout.h5 -f GZIP=1" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST gzip_all $arg fi # szip with individual object @@ -523,7 +597,7 @@ arg="h5repack_layout.h5 -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST szip_individual $arg fi # szip for all @@ -531,7 +605,7 @@ arg="h5repack_layout.h5 -f SZIP=8,NN" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST szip_all $arg fi # shuffle with individual object @@ -539,7 +613,7 @@ arg="h5repack_layout.h5 -f dset2:SHUF -l dset2:CHUNK=20x10" if test $USE_FILTER_SHUFFLE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST shuffle_individual $arg fi @@ -548,7 +622,7 @@ arg="h5repack_layout.h5 -f SHUF" if test $USE_FILTER_SHUFFLE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST shuffle_all $arg fi # fletcher32 with individual object @@ -556,7 +630,7 @@ arg="h5repack_layout.h5 -f dset2:FLET -l dset2:CHUNK=20x10" if test $USE_FILTER_FLETCHER32 != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST fletcher_individual $arg fi # fletcher32 for all @@ -564,7 +638,7 @@ arg="h5repack_layout.h5 -f FLET" if test $USE_FILTER_FLETCHER32 != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST fletcher_all $arg fi # all filters @@ -572,7 +646,7 @@ arg="h5repack_layout.h5 -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2: if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST all_filters $arg fi # verbose gzip with individual object @@ -581,7 +655,7 @@ if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else # compare output - TOOLTESTV $arg + TOOLTESTV gzip_verbose_filters $arg fi ########################################################### @@ -593,7 +667,7 @@ arg="h5repack_szip.h5" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST szip_copy $arg fi # szip remove @@ -601,7 +675,7 @@ arg="h5repack_szip.h5 --filter=dset_szip:NONE" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST szip_remove $arg fi # deflate copy @@ -609,7 +683,7 @@ arg="h5repack_deflate.h5" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST deflate_copy $arg fi # deflate remove @@ -617,7 +691,7 @@ arg="h5repack_deflate.h5 -f dset_deflate:NONE" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST deflate_remove $arg fi # shuffle copy @@ -625,7 +699,7 @@ arg="h5repack_shuffle.h5" if test $USE_FILTER_SHUFFLE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST shuffle_copy $arg fi # shuffle remove @@ -633,7 +707,7 @@ arg="h5repack_shuffle.h5 -f dset_shuffle:NONE" if test $USE_FILTER_SHUFFLE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST shuffle_remove $arg fi # fletcher32 copy @@ -641,7 +715,7 @@ arg="h5repack_fletcher.h5" if test $USE_FILTER_FLETCHER32 != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST fletcher_copy $arg fi # fletcher32 remove @@ -649,7 +723,7 @@ arg="h5repack_fletcher.h5 -f dset_fletcher32:NONE" if test $USE_FILTER_FLETCHER32 != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST fletcher_remove $arg fi # nbit copy @@ -657,7 +731,7 @@ arg="h5repack_nbit.h5" if test $USE_FILTER_NBIT != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST nbit_copy $arg fi # nbit remove @@ -665,7 +739,7 @@ arg="h5repack_nbit.h5 -f dset_nbit:NONE" if test $USE_FILTER_NBIT != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST nbit_remove $arg fi # nbit add @@ -673,7 +747,7 @@ arg="h5repack_nbit.h5 -f dset_int31:NBIT" if test $USE_FILTER_NBIT != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST nbit_add $arg fi # scaleoffset copy @@ -681,7 +755,7 @@ arg="h5repack_soffset.h5" if test $USE_FILTER_SCALEOFFSET != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST scale_copy $arg fi # scaleoffset add @@ -689,7 +763,7 @@ arg="h5repack_soffset.h5 -f dset_none:SOFF=31,IN" if test $USE_FILTER_SCALEOFFSET != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST scale_add $arg fi # scaleoffset remove @@ -697,7 +771,7 @@ arg="h5repack_soffset.h5 -f dset_scaleoffset:NONE" if test $USE_FILTER_SCALEOFFSET != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST scale_remove $arg fi # remove all filters @@ -705,7 +779,7 @@ arg="h5repack_filters.h5 -f NONE" if test $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_NBIT != "yes" -o $USE_FILTER_SCALEOFFSET != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST remove_all $arg fi #filter conversions @@ -714,14 +788,14 @@ arg="h5repack_deflate.h5 -f dset_deflate:SZIP=8,NN" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST deflate_convert $arg fi arg="h5repack_szip.h5 -f dset_szip:GZIP=1" if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST szip_convert $arg fi @@ -730,7 +804,7 @@ arg="h5repack_layout.h5 -f GZIP=1 -m 1024" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST deflate_limit $arg fi #file @@ -738,67 +812,50 @@ arg="h5repack_layout.h5 -e $TESTDIR/h5repack.info" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST deflate_file $arg fi ######################################################### # layout options (these files have no filters) ######################################################### -TOOLTEST_MAIN h5repack_layout.h5 --layout dset2:CHUNK=20x10 -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset2 CHUNKED +VERIFY_LAYOUT_DSET dset2_chunk_20x10 h5repack_layout.h5 dset2 CHUNKED --layout dset2:CHUNK=20x10 -TOOLTEST_MAIN h5repack_layout.h5 -l CHUNK=20x10 -VERIFY_LAYOUT_ALL h5repack_layout.h5 CHUNKED +VERIFY_LAYOUT_ALL chunk_20x10 h5repack_layout.h5 CHUNKED -l CHUNK=20x10 -TOOLTEST_MAIN h5repack_layout.h5 -l dset2:CONTI -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset2 CONTIGUOUS +VERIFY_LAYOUT_DSET dset2_conti h5repack_layout.h5 dset2 CONTIGUOUS -l dset2:CONTI -TOOLTEST_MAIN h5repack_layout.h5 -l CONTI -VERIFY_LAYOUT_ALL h5repack_layout.h5 CONTIGUOUS +VERIFY_LAYOUT_ALL conti h5repack_layout.h5 CONTIGUOUS -l CONTI -TOOLTEST_MAIN h5repack_layout.h5 -l dset2:COMPA -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset2 COMPACT +VERIFY_LAYOUT_DSET dset2_compa h5repack_layout.h5 dset2 COMPACT -l dset2:COMPA -TOOLTEST_MAIN h5repack_layout.h5 -l COMPA -VERIFY_LAYOUT_ALL h5repack_layout.h5 COMPACT +VERIFY_LAYOUT_ALL compa h5repack_layout.h5 COMPACT -l COMPA ################################################################ # layout conversions (file has no filters) ############################################################### -TOOLTEST_MAIN h5repack_layout.h5 -l dset_compact:CONTI -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_compact CONTIGUOUS +VERIFY_LAYOUT_DSET dset_compa_conti h5repack_layout.h5 dset_compact CONTIGUOUS -l dset_compact:CONTI -TOOLTEST_MAIN h5repack_layout.h5 -l dset_compact:CHUNK=2x5 -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_compact CHUNKED +VERIFY_LAYOUT_DSET dset_compa_chunk h5repack_layout.h5 dset_compact CHUNKED -l dset_compact:CHUNK=2x5 -TOOLTEST_MAIN h5repack_layout.h5 -l dset_compact:COMPA -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_compact COMPACT +VERIFY_LAYOUT_DSET dset_compa_compa h5repack_layout.h5 dset_compact COMPACT -l dset_compact:COMPA -TOOLTEST_MAIN h5repack_layout.h5 -l dset_contiguous:COMPA -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_contiguous COMPACT +VERIFY_LAYOUT_DSET dset_conti_compa h5repack_layout.h5 dset_contiguous COMPACT -l dset_contiguous:COMPA -TOOLTEST_MAIN h5repack_layout.h5 -l dset_contiguous:CHUNK=3x6 -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_contiguous CHUNKED +VERIFY_LAYOUT_DSET dset_conti_chunk h5repack_layout.h5 dset_contiguous CHUNKED -l dset_contiguous:CHUNK=3x6 -TOOLTEST_MAIN h5repack_layout.h5 -l dset_contiguous:CONTI -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_contiguous CONTIGUOUS +VERIFY_LAYOUT_DSET dset_conti_conti h5repack_layout.h5 dset_contiguous CONTIGUOUS -l dset_contiguous:CONTI -TOOLTEST_MAIN h5repack_layout.h5 -l dset_chunk:COMPA -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_chunk COMPACT +VERIFY_LAYOUT_DSET chunk_compa h5repack_layout.h5 dset_chunk COMPACT -l dset_chunk:COMPA -TOOLTEST_MAIN h5repack_layout.h5 -l dset_chunk:CONTI -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_chunk CONTIGUOUS +VERIFY_LAYOUT_DSET chunk_conti h5repack_layout.h5 dset_chunk CONTIGUOUS -l dset_chunk:CONTI -TOOLTEST_MAIN h5repack_layout.h5 -l dset_chunk:CHUNK=18x13 -VERIFY_LAYOUT_DSET h5repack_layout.h5 dset_chunk CHUNKED +VERIFY_LAYOUT_DSET chunk_18x13 h5repack_layout.h5 dset_chunk CHUNKED -l dset_chunk:CHUNK=18x13 # test convert small size dataset ( < 1k) to compact layout without -m -TOOLTEST_MAIN h5repack_layout2.h5 -l contig_small:COMPA -VERIFY_LAYOUT_DSET h5repack_layout2.h5 contig_small COMPACT +VERIFY_LAYOUT_DSET contig_small_compa h5repack_layout2.h5 contig_small COMPACT -l contig_small:COMPA -TOOLTEST_MAIN h5repack_layout2.h5 -l chunked_small_fixed:COMPA -VERIFY_LAYOUT_DSET h5repack_layout2.h5 chunked_small_fixed COMPACT +VERIFY_LAYOUT_DSET contig_small_fixed_compa h5repack_layout2.h5 chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA #--------------------------------------------------------------------------- # Test file contains chunked datasets (need multiple dsets) with @@ -806,17 +863,14 @@ VERIFY_LAYOUT_DSET h5repack_layout2.h5 chunked_small_fixed COMPACT # Use first dset to test. #--------------------------------------------------------------------------- # chunk to chunk - specify chunk dim bigger than any current dim -TOOLTEST_MAIN h5repack_layout3.h5 -l chunk_unlimit1:CHUNK=100x300 -VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit1 CHUNK +VERIFY_LAYOUT_DSET chunk2chunk h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300 # chunk to contiguous -TOOLTEST_MAIN h5repack_layout3.h5 -l chunk_unlimit1:CONTI -VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit1 CONTI +VERIFY_LAYOUT_DSET chunk2conti h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI # chunk to compact - convert big dataset (should be > 64k) for this purpose, # should remain as original layout (chunk) -TOOLTEST_MAIN h5repack_layout3.h5 -l chunk_unlimit1:COMPA -VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit1 CHUNK +VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA #-------------------------------------------------------------------------- # Test -f for some specific cases. Chunked dataset with unlimited max dims. @@ -826,24 +880,22 @@ VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit1 CHUNK # - should not change max dims from unlimit # chunk dim is bigger than dataset dim. ( dset size < 64k ) -TOOLTEST_MAIN h5repack_layout3.h5 -f chunk_unlimit1:NONE -VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED +VERIFY_LAYOUT_DSET error1 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED -f chunk_unlimit1:NONE # chunk dim is bigger than dataset dim. ( dset size > 64k ) -TOOLTEST_MAIN h5repack_layout3.h5 -f chunk_unlimit2:NONE -VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED +VERIFY_LAYOUT_DSET error2 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED -f chunk_unlimit2:NONE # chunk dims are smaller than dataset dims. ( dset size < 64k ) -TOOLTEST_MAIN h5repack_layout3.h5 -f chunk_unlimit3:NONE -VERIFY_LAYOUT_DSET h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED +#TOOLTEST_MAIN h5repack_layout3.h5 -f chunk_unlimit3:NONE +VERIFY_LAYOUT_DSET error3 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f chunk_unlimit3:NONE # file input - should not fail -TOOLTEST h5repack_layout3.h5 -f NONE +TOOLTEST error4 h5repack_layout3.h5 -f NONE # Native option # Do not use FILE1, as the named dtype will be converted to native, and h5diff will # report a difference. -TOOLTEST h5repack_fill.h5 -n -TOOLTEST h5repack_attr.h5 -n +TOOLTEST native_fill h5repack_fill.h5 -n +TOOLTEST native_attr h5repack_attr.h5 -n # latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters) @@ -851,8 +903,7 @@ arg="h5repack_layout.h5 --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --nati if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST_MAIN $arg - VERIFY_LAYOUT_ALL h5repack_layout.h5 CHUNKED + VERIFY_LAYOUT_ALL layout_long_switches h5repack_layout.h5 CHUNKED --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype] fi # latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters) @@ -860,8 +911,7 @@ arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dty if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST_MAIN $arg - VERIFY_LAYOUT_ALL h5repack_layout.h5 CHUNKED + VERIFY_LAYOUT_ALL layout_short_switches h5repack_layout.h5 CHUNKED -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype] fi # several global filters @@ -870,7 +920,7 @@ arg="h5repack_layout.h5 --filter GZIP=1 --filter SHUF" if test $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SHUFFLE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST global_filters $arg fi # syntax of -i infile -o outfile @@ -879,46 +929,47 @@ arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dty if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST0 $arg + TOOLTEST0 old_style_layout_short_switches $arg fi # add a userblock to file -arg="h5repack_objs.h5 -u ublock.bin -b 2048" -TOOLTEST $arg +arg="h5repack_objs.h5 -u $TESTDIR/ublock.bin -b 2048" +TOOLTEST add_userblock $arg # add alignment arg="h5repack_objs.h5 -t 1 -a 1 " -TOOLTEST $arg +TOOLTEST add_alignment $arg # Check repacking file with old version of layout message (should get upgraded # to new version and be readable, etc.) -TOOLTEST h5repack_layouto.h5 +TOOLTEST pgrade_layout h5repack_layouto.h5 # test for datum size > H5TOOLS_MALLOCSIZE -TOOLTEST h5repack_objs.h5 -f GZIP=1 +TOOLTEST gt_mallocsize h5repack_objs.h5 -f GZIP=1 # Check repacking file with committed datatypes in odd configurations -TOOLTEST h5repack_named_dtypes.h5 +TOOLTEST committed_dt h5repack_named_dtypes.h5 # tests family driver (file is located in common testfiles folder, uses TOOLTEST1 -TOOLTEST1 tfamily%05d.h5 +TOOLTEST1 family tfamily%05d.h5 # test various references (bug 1814 and 1726) -TOOLTEST h5repack_refs.h5 +TOOLTEST bug1814 h5repack_refs.h5 # test attribute with various references (bug1797 / HDFFV-5932) # the references in attribute of compund or vlen datatype -TOOLTEST h5repack_attr_refs.h5 +TOOLTEST HDFFV-5932 h5repack_attr_refs.h5 # Add test for memory leak in attirbute. This test is verified by CTEST. # 1. leak from vlen string # 2. leak from compound type without reference member # (HDFFV-7840, ) # Note: this test is experimental for sharing test file among tools -TOOLTEST h5diff_attr1.h5 +TOOLTEST HDFFV-7840 h5diff_attr1.h5 # tests for metadata block size option -TOOLTEST_META h5repack_layout.h5 --metadata_block_size=8192 +TOOLTEST_META meta_short h5repack_layout.h5 -M 8192 +TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192 if test $nerrors -eq 0 ; then echo "All $TESTNAME tests passed." diff --git a/tools/h5stat/CMakeLists.txt b/tools/h5stat/CMakeLists.txt index 9afb365..447df70 100644 --- a/tools/h5stat/CMakeLists.txt +++ b/tools/h5stat/CMakeLists.txt @@ -99,10 +99,9 @@ IF (BUILD_TESTING) IF (NOT "${last_test}" STREQUAL "") SET_TESTS_PROPERTIES (H5STAT-${resultfile} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - SET (last_test "H5STAT-${resultfile}") ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5STAT-clear-${resultfile}-objects + NAME H5STAT-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove ${resultfile}.out ${resultfile}.out.err ) @@ -117,7 +116,7 @@ IF (BUILD_TESTING) -D "TEST_REFERENCE=${resultfile}.ddl" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5STAT-${resultfile} PROPERTIES DEPENDS "H5STAT-clear-${resultfile}-objects") + SET_TESTS_PROPERTIES (H5STAT-${resultfile} PROPERTIES DEPENDS "H5STAT-${resultfile}-clear-objects") ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_TEST file) diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in index 389e460..ec77732 100644 --- a/tools/h5stat/Makefile.in +++ b/tools/h5stat/Makefile.in @@ -263,6 +263,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -314,7 +315,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in index 6a76e1d..743e158 100644 --- a/tools/lib/Makefile.in +++ b/tools/lib/Makefile.in @@ -226,6 +226,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -277,7 +278,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c index 130a0d8..4899200 100644 --- a/tools/lib/h5diff_attr.c +++ b/tools/lib/h5diff_attr.c @@ -350,6 +350,13 @@ hsize_t diff_attr(hid_t loc1_id, if( build_match_list_attrs(loc1_id, loc2_id, &match_list_attrs, options) < 0) goto error; + /* if detect any unique extra attr */ + if(match_list_attrs->nattrs_only1 || match_list_attrs->nattrs_only2) + { + /* exit will be 1 */ + options->contents = 0; + } + for(u = 0; u < (unsigned)match_list_attrs->nattrs; u++) { if( (match_list_attrs->attrs[u].exist[0]) && (match_list_attrs->attrs[u].exist[1]) ) diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c index f83c664..dbb5f98 100644 --- a/tools/lib/h5tools_dump.c +++ b/tools/lib/h5tools_dump.c @@ -302,7 +302,7 @@ h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t contai */ curr_pos = ctx->sm_pos; - if (region_output && H5Tequal(type, H5T_STD_REF_DSETREG)) { + if (region_output && (size == H5R_DSET_REG_REF_BUF_SIZE)) { for (i = 0; i < nelmts; i++, ctx->cur_elmt++, elmt_counter++) { void* memref = mem + i * size; char ref_name[1024]; diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c index 1646351..e17ae89 100644 --- a/tools/lib/h5tools_str.c +++ b/tools/lib/h5tools_str.c @@ -685,7 +685,8 @@ char * h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t container, hid_t type, void *vp, h5tools_context_t *ctx) { - size_t n, offset, size=0, nelmts, start; + size_t nsize, offset, size=0, nelmts, start; + H5T_sign_t nsign; char *name; unsigned char *ucp_vp = (unsigned char *)vp; char *cp_vp = (char *)vp; @@ -715,15 +716,16 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai /* Append value depending on data type */ start = h5tools_str_len(str); + nsize = H5Tget_size(type); + nsign = H5Tget_sign(type); if (info->raw) { size_t i; - n = H5Tget_size(type); - if (1 == n) { + if (1 == nsize) { h5tools_str_append(str, OPT(info->fmt_raw, "0x%02x"), ucp_vp[0]); } else { - for (i = 0; i < n; i++) { + for (i = 0; i < nsize; i++) { if (i) h5tools_str_append(str, ":"); h5tools_str_append(str, OPT(info->fmt_raw, "%02x"), ucp_vp[i]); @@ -735,20 +737,23 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai return NULL; switch (type_class) { case H5T_FLOAT: - if (H5Tequal(type, H5T_NATIVE_FLOAT)) { + if (sizeof(float) == nsize) { + /* if (H5Tequal(type, H5T_NATIVE_FLOAT)) */ float tempfloat; HDmemcpy(&tempfloat, vp, sizeof(float)); h5tools_str_append(str, OPT(info->fmt_float, "%g"), tempfloat); } - else if (H5Tequal(type, H5T_NATIVE_DOUBLE)) { + else if (sizeof(double) == nsize) { + /* if (H5Tequal(type, H5T_NATIVE_DOUBLE)) */ double tempdouble; HDmemcpy(&tempdouble, vp, sizeof(double)); h5tools_str_append(str, OPT(info->fmt_double, "%g"), tempdouble); #if H5_SIZEOF_LONG_DOUBLE !=0 } - else if (H5Tequal(type, H5T_NATIVE_LDOUBLE)) { + else if (sizeof(long double) == nsize) { + /* if (H5Tequal(type, H5T_NATIVE_LDOUBLE)) */ long double templdouble; HDmemcpy(&templdouble, vp, sizeof(long double)); @@ -833,147 +838,140 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai } break; case H5T_INTEGER: - if (H5Tequal(type, H5T_NATIVE_INT)) { - HDmemcpy(&tempint, vp, sizeof(int)); - if (packed_bits_num) { - if (packed_data_offset >= 8 * sizeof(int)) - tempint = 0; - else - tempint = (tempint >> packed_data_offset) & packed_data_mask; - } - h5tools_str_append(str, OPT(info->fmt_int, "%d"), tempint); - } - else if (H5Tequal(type, H5T_NATIVE_UINT)) { - HDmemcpy(&tempuint, vp, sizeof(unsigned int)); - if (packed_bits_num) { - if (packed_data_offset >= 8 * sizeof(unsigned int)) - tempuint = 0; - else - tempuint = (tempuint >> packed_data_offset) & packed_data_mask; - } - h5tools_str_append(str, OPT(info->fmt_uint, "%u"), tempuint); - } - else if (info->ascii && (H5Tequal(type, H5T_NATIVE_SCHAR) || H5Tequal(type, H5T_NATIVE_UCHAR))) { - h5tools_print_char(str, info, (char) (*ucp_vp)); - } - else if (H5Tequal(type, H5T_NATIVE_SCHAR)) { - signed char tempchar; - HDmemcpy(&tempchar, cp_vp, sizeof(char)); - if (packed_bits_num) { - if (packed_data_offset >= 8 * sizeof(char)) - tempchar = 0; - else - tempchar = (tempchar >> packed_data_offset) & packed_data_mask; - } -#ifdef H5_VMS - h5tools_str_append(str, OPT(info->fmt_schar, "%hd"), tempchar); -#else - h5tools_str_append(str, OPT(info->fmt_schar, "%hhd"), tempchar); -#endif - } - else if (H5Tequal(type, H5T_NATIVE_UCHAR)) { - unsigned char tempuchar; - HDmemcpy(&tempuchar, ucp_vp, sizeof(unsigned char)); - if (packed_bits_num) { - if (packed_data_offset >= 8 * sizeof(unsigned char)) - tempuchar = 0; - else - tempuchar = (tempuchar >> packed_data_offset) & packed_data_mask; - } - h5tools_str_append(str, OPT(info->fmt_uchar, "%u"), tempuchar); - } - else if (H5Tequal(type, H5T_NATIVE_SHORT)) { - short tempshort; - - HDmemcpy(&tempshort, vp, sizeof(short)); - if (packed_bits_num) { - if (packed_data_offset >= 8 * sizeof(short)) - tempshort = 0; - else - tempshort = (tempshort >> packed_data_offset) & packed_data_mask; - } - h5tools_str_append(str, OPT(info->fmt_short, "%d"), tempshort); - } - else if (H5Tequal(type, H5T_NATIVE_USHORT)) { - unsigned short tempushort; - - HDmemcpy(&tempushort, vp, sizeof(unsigned short)); - if (packed_bits_num) { - if (packed_data_offset >= 8 * sizeof(unsigned short)) - tempushort = 0; - else - tempushort = (tempushort >> packed_data_offset) & packed_data_mask; - } - h5tools_str_append(str, OPT(info->fmt_ushort, "%u"), tempushort); - } - else if (H5Tequal(type, H5T_NATIVE_LONG)) { - HDmemcpy(&templong, vp, sizeof(long)); - if (packed_bits_num) { - if (packed_data_offset >= 8 * sizeof(long)) - templong = 0; - else - templong = (templong >> packed_data_offset) & packed_data_mask; + if (sizeof(char) == nsize) { + /* if ((H5Tequal(type, H5T_NATIVE_SCHAR) || H5Tequal(type, H5T_NATIVE_UCHAR))) */ + if (info->ascii) { + h5tools_print_char(str, info, (char) (*ucp_vp)); } - h5tools_str_append(str, OPT(info->fmt_long, "%ld"), templong); - } - else if (H5Tequal(type, H5T_NATIVE_ULONG)) { - HDmemcpy(&tempulong, vp, sizeof(unsigned long)); - if (packed_bits_num) { - if (packed_data_offset >= 8 * sizeof(unsigned long)) - tempulong = 0; - else - tempulong = (tempulong >> packed_data_offset) & packed_data_mask; + else if(H5T_SGN_NONE == nsign) { + /* if (H5Tequal(type, H5T_NATIVE_UCHAR)) */ + unsigned char tempuchar; + HDmemcpy(&tempuchar, ucp_vp, sizeof(unsigned char)); + if (packed_bits_num) { + if (packed_data_offset >= 8 * sizeof(unsigned char)) + tempuchar = 0; + else + tempuchar = (tempuchar >> packed_data_offset) & packed_data_mask; + } + h5tools_str_append(str, OPT(info->fmt_uchar, "%u"), tempuchar); } - h5tools_str_append(str, OPT(info->fmt_ulong, "%lu"), tempulong); - } - else if (H5Tequal(type, H5T_NATIVE_LLONG)) { - HDmemcpy(&templlong, vp, sizeof(long long)); - if (packed_bits_num) { - if (packed_data_offset >= 8 * sizeof(long long)) - templlong = 0; - else - templlong = (templlong >> packed_data_offset) & packed_data_mask; + else { + /* if (H5Tequal(type, H5T_NATIVE_SCHAR)) */ + signed char tempchar; + HDmemcpy(&tempchar, cp_vp, sizeof(char)); + if (packed_bits_num) { + if (packed_data_offset >= 8 * sizeof(char)) + tempchar = 0; + else + tempchar = (tempchar >> packed_data_offset) & packed_data_mask; + } + #ifdef H5_VMS + h5tools_str_append(str, OPT(info->fmt_schar, "%hd"), tempchar); + #else + h5tools_str_append(str, OPT(info->fmt_schar, "%hhd"), tempchar); + #endif } - h5tools_str_append(str, OPT(info->fmt_llong, fmt_llong), templlong); - } - else if (H5Tequal(type, H5T_NATIVE_ULLONG)) { - HDmemcpy(&tempullong, vp, sizeof(unsigned long long)); - if (packed_bits_num) { - if (packed_data_offset >= 8 * sizeof(unsigned long long)) - tempullong = 0; - else - tempullong = (tempullong >> packed_data_offset) & packed_data_mask; + } /* end if (sizeof(char) == nsize) */ + else if (sizeof(int) == nsize) { + if(H5T_SGN_NONE == nsign) { + /* if (H5Tequal(type, H5T_NATIVE_UINT)) */ + HDmemcpy(&tempuint, vp, sizeof(unsigned int)); + if (packed_bits_num) { + if (packed_data_offset >= 8 * sizeof(unsigned int)) + tempuint = 0; + else + tempuint = (tempuint >> packed_data_offset) & packed_data_mask; + } + h5tools_str_append(str, OPT(info->fmt_uint, "%u"), tempuint); } - h5tools_str_append(str, OPT(info->fmt_ullong, fmt_ullong), tempullong); - } - else if (H5Tequal(type, H5T_NATIVE_HSSIZE)) { - if (sizeof(hssize_t) == sizeof(int)) { + else { + /* if (H5Tequal(type, H5T_NATIVE_INT)) */ HDmemcpy(&tempint, vp, sizeof(int)); + if (packed_bits_num) { + if (packed_data_offset >= 8 * sizeof(int)) + tempint = 0; + else + tempint = (tempint >> packed_data_offset) & packed_data_mask; + } h5tools_str_append(str, OPT(info->fmt_int, "%d"), tempint); } - else if (sizeof(hssize_t) == sizeof(long)) { - HDmemcpy(&templong, vp, sizeof(long)); - h5tools_str_append(str, OPT(info->fmt_long, "%ld"), templong); + } /* end if (sizeof(int) == nsize) */ + else if (sizeof(short) == nsize) { + if(H5T_SGN_NONE == nsign) { + /* if (H5Tequal(type, H5T_NATIVE_USHORT)) */ + unsigned short tempushort; + + HDmemcpy(&tempushort, vp, sizeof(unsigned short)); + if (packed_bits_num) { + if (packed_data_offset >= 8 * sizeof(unsigned short)) + tempushort = 0; + else + tempushort = (tempushort >> packed_data_offset) & packed_data_mask; + } + h5tools_str_append(str, OPT(info->fmt_ushort, "%u"), tempushort); } else { - HDmemcpy(&templlong, vp, sizeof(long long)); - h5tools_str_append(str, OPT(info->fmt_llong, fmt_llong), templlong); - } - } - else if (H5Tequal(type, H5T_NATIVE_HSIZE)) { - if (sizeof(hsize_t) == sizeof(int)) { - HDmemcpy(&tempuint, vp, sizeof(unsigned int)); - h5tools_str_append(str, OPT(info->fmt_uint, "%u"), tempuint); + /* if (H5Tequal(type, H5T_NATIVE_SHORT)) */ + short tempshort; + + HDmemcpy(&tempshort, vp, sizeof(short)); + if (packed_bits_num) { + if (packed_data_offset >= 8 * sizeof(short)) + tempshort = 0; + else + tempshort = (tempshort >> packed_data_offset) & packed_data_mask; + } + h5tools_str_append(str, OPT(info->fmt_short, "%d"), tempshort); } - else if (sizeof(hsize_t) == sizeof(long)) { - HDmemcpy(&tempulong, vp, sizeof(long)); + } /* end if (sizeof(short) == nsize) */ + else if (sizeof(long) == nsize) { + if(H5T_SGN_NONE == nsign) { + /* if (H5Tequal(type, H5T_NATIVE_ULONG)) */ + HDmemcpy(&tempulong, vp, sizeof(unsigned long)); + if (packed_bits_num) { + if (packed_data_offset >= 8 * sizeof(unsigned long)) + tempulong = 0; + else + tempulong = (tempulong >> packed_data_offset) & packed_data_mask; + } h5tools_str_append(str, OPT(info->fmt_ulong, "%lu"), tempulong); } else { + /* if (H5Tequal(type, H5T_NATIVE_LONG)) */ + HDmemcpy(&templong, vp, sizeof(long)); + if (packed_bits_num) { + if (packed_data_offset >= 8 * sizeof(long)) + templong = 0; + else + templong = (templong >> packed_data_offset) & packed_data_mask; + } + h5tools_str_append(str, OPT(info->fmt_long, "%ld"), templong); + } + } /* end if (sizeof(long) == nsize) */ + else if (sizeof(long long) == nsize) { + if(H5T_SGN_NONE == nsign) { + /* if (H5Tequal(type, H5T_NATIVE_ULLONG)) */ HDmemcpy(&tempullong, vp, sizeof(unsigned long long)); + if (packed_bits_num) { + if (packed_data_offset >= 8 * sizeof(unsigned long long)) + tempullong = 0; + else + tempullong = (tempullong >> packed_data_offset) & packed_data_mask; + } h5tools_str_append(str, OPT(info->fmt_ullong, fmt_ullong), tempullong); } - } + else { + /* if (H5Tequal(type, H5T_NATIVE_LLONG)) */ + HDmemcpy(&templlong, vp, sizeof(long long)); + if (packed_bits_num) { + if (packed_data_offset >= 8 * sizeof(long long)) + templlong = 0; + else + templlong = (templlong >> packed_data_offset) & packed_data_mask; + } + h5tools_str_append(str, OPT(info->fmt_llong, fmt_llong), templlong); + } + } /* end if (sizeof(long long) == nsize) */ break; case H5T_COMPOUND: { @@ -1024,75 +1022,71 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai } else { size_t i; - n = H5Tget_size(type); - if (1 == n) { + if (1 == nsize) { h5tools_str_append(str, "0x%02x", ucp_vp[0]); } else { - for (i = 0; i < n; i++) + for (i = 0; i < nsize; i++) h5tools_str_append(str, "%s%02x", i ? ":" : "", ucp_vp[i]); } } } break; case H5T_REFERENCE: - if (H5Tequal(type, H5T_STD_REF_DSETREG)) { - if (h5tools_str_is_zero(vp, H5Tget_size(type))) { - h5tools_str_append(str, "NULL"); - } - else { - h5tools_str_sprint_region(str, info, container, vp); - } + if (h5tools_str_is_zero(vp, nsize)) { + h5tools_str_append(str, "NULL"); } - else if (H5Tequal(type, H5T_STD_REF_OBJ)) { - /* - * Object references -- show the type and OID of the referenced - * object. - */ - if (h5tools_str_is_zero(vp, H5Tget_size(type))) { - h5tools_str_append(str, "NULL"); + else { + if (nsize == H5R_DSET_REG_REF_BUF_SIZE) { + /* if (H5Tequal(type, H5T_STD_REF_DSETREG)) */ + h5tools_str_sprint_region(str, info, container, vp); } - else { - H5O_info_t oi; - const char *path; - - obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, vp); - H5Oget_info(obj, &oi); - - /* Print object type and close object */ - switch (oi.type) { - case H5O_TYPE_GROUP: - h5tools_str_append(str, H5_TOOLS_GROUP); - break; - - case H5O_TYPE_DATASET: - h5tools_str_append(str, H5_TOOLS_DATASET); - break; - - case H5O_TYPE_NAMED_DATATYPE: - h5tools_str_append(str, H5_TOOLS_DATATYPE); - break; - - default: - h5tools_str_append(str, "%u-", (unsigned) oi.type); - break; - } /* end switch */ - H5Oclose(obj); - - /* Print OID */ - if (info->obj_hidefileno) - h5tools_str_append(str, info->obj_format, oi.addr); - else - h5tools_str_append(str, info->obj_format, oi.fileno, oi.addr); - - /* Print name */ - path = lookup_ref_path(*(haddr_t *) vp); - if (path) { - h5tools_str_append(str, " "); - h5tools_str_append(str, path); - h5tools_str_append(str, " "); - } /* end if */ - } /* end else */ + else if (nsize == H5R_OBJ_REF_BUF_SIZE) { + /* if (H5Tequal(type, H5T_STD_REF_OBJ)) */ + /* + * Object references -- show the type and OID of the referenced + * object. + */ + H5O_info_t oi; + const char *path; + + obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, vp); + H5Oget_info(obj, &oi); + + /* Print object type and close object */ + switch (oi.type) { + case H5O_TYPE_GROUP: + h5tools_str_append(str, H5_TOOLS_GROUP); + break; + + case H5O_TYPE_DATASET: + h5tools_str_append(str, H5_TOOLS_DATASET); + break; + + case H5O_TYPE_NAMED_DATATYPE: + h5tools_str_append(str, H5_TOOLS_DATATYPE); + break; + + default: + h5tools_str_append(str, "%u-", (unsigned) oi.type); + break; + } /* end switch */ + H5Oclose(obj); + + /* Print OID */ + if (info->obj_hidefileno) + h5tools_str_append(str, info->obj_format, oi.addr); + else + h5tools_str_append(str, info->obj_format, oi.fileno, oi.addr); + + /* Print name */ + path = lookup_ref_path(*(haddr_t *) vp); + if (path) { + h5tools_str_append(str, " "); + h5tools_str_append(str, path); + h5tools_str_append(str, " "); + } /* end if */ + } /* end else if (H5Tequal(type, H5T_STD_REF_OBJ)) */ } break; case H5T_ARRAY: @@ -1206,12 +1200,11 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai { /* All other types get printed as hexadecimal */ size_t i; - n = H5Tget_size(type); - if (1 == n) { + if (1 == nsize) { h5tools_str_append(str, "0x%02x", ucp_vp[0]); } else { - for (i = 0; i < n; i++) + for (i = 0; i < nsize; i++) h5tools_str_append(str, "%s%02x", i ? ":" : "", ucp_vp[i]); } } diff --git a/tools/misc/CMakeLists.txt b/tools/misc/CMakeLists.txt index d310d3d..e778d2f 100644 --- a/tools/misc/CMakeLists.txt +++ b/tools/misc/CMakeLists.txt @@ -62,7 +62,7 @@ IF (BUILD_TESTING) SET_TARGET_PROPERTIES (h5repart_test PROPERTIES FOLDER tools) # -------------------------------------------------------------------- - # Copy all the HDF5 files from the test directory into the source directory + # Copy all the HDF5 files from the source directory into the test directory # -------------------------------------------------------------------- SET (HDF5_REFERENCE_TEST_FILES family_file00000.h5 @@ -97,37 +97,43 @@ IF (BUILD_TESTING) ENDFOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES}) SET (HDF5_MKGRP_TEST_FILES - #h5mkgrp_help + #h5mkgrp_help.txt #h5mkgrp_version - h5mkgrp_single - h5mkgrp_single_latest - h5mkgrp_several - h5mkgrp_several_latest - h5mkgrp_nested - h5mkgrp_nested_latest - h5mkgrp_nested_mult - h5mkgrp_nested_mult_latest + h5mkgrp_single.ls + h5mkgrp_single_v.ls + h5mkgrp_single_p.ls + h5mkgrp_single_l.ls + h5mkgrp_several.ls + h5mkgrp_several_v.ls + h5mkgrp_several_p.ls + h5mkgrp_several_l.ls + h5mkgrp_nested_p.ls + h5mkgrp_nested_lp.ls + h5mkgrp_nested_mult_p.ls + h5mkgrp_nested_mult_lp.ls ) - FILE (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/../testfiles") + # make test dir + FILE (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + FOREACH (h5_mkgrp_file ${HDF5_MKGRP_TEST_FILES}) - SET (dest "${PROJECT_BINARY_DIR}/${h5_mkgrp_file}") + SET (dest "${PROJECT_BINARY_DIR}/testfiles/${h5_mkgrp_file}") #MESSAGE (STATUS " Copying ${h5_mkgrp_file}") ADD_CUSTOM_COMMAND ( TARGET h5mkgrp POST_BUILD - COMMAND ${XLATE_UTILITY} - ARGS ${HDF5_TOOLS_SRC_DIR}/testfiles/${h5_mkgrp_file}.ls ${dest}.ls -l3 + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_TOOLS_SRC_DIR}/testfiles/${h5_mkgrp_file} ${dest} ) ENDFOREACH (h5_mkgrp_file ${HDF5_MKGRP_TEST_FILES}) ADD_CUSTOM_COMMAND ( TARGET h5mkgrp POST_BUILD - COMMAND ${XLATE_UTILITY} - ARGS ${PROJECT_SOURCE_DIR}/testfiles/h5mkgrp_help.txt ${PROJECT_BINARY_DIR}/h5mkgrp_help.txt -l0 + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${PROJECT_SOURCE_DIR}/testfiles/h5mkgrp_help.txt ${PROJECT_BINARY_DIR}/testfiles/h5mkgrp_help.txt ) - CONFIGURE_FILE (${PROJECT_SOURCE_DIR}/testfiles/h5mkgrp_version.txt.in ${PROJECT_BINARY_DIR}/h5mkgrp_version.txt @ONLY) + CONFIGURE_FILE (${PROJECT_SOURCE_DIR}/testfiles/h5mkgrp_version.txt.in ${PROJECT_BINARY_DIR}/testfiles/h5mkgrp_version.txt @ONLY) ############################################################################## ############################################################################## @@ -136,102 +142,71 @@ IF (BUILD_TESTING) ############################################################################## MACRO (ADD_H5_TEST resultfile resultcode resultoption) - IF (NOT ${resultoption} STREQUAL " ") - ADD_TEST ( - NAME H5MKGRP-clear-${resultfile}${resultoption} - COMMAND ${CMAKE_COMMAND} - -E remove - ${PROJECT_BINARY_DIR}/../testfiles/${resultfile}.h5 - ${PROJECT_BINARY_DIR}/${resultfile}.out - ${PROJECT_BINARY_DIR}/${resultfile}.out.err - ) - IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5MKGRP-clear-${resultfile}${resultoption} PROPERTIES DEPENDS ${last_test}) - ENDIF (NOT "${last_test}" STREQUAL "") - ADD_TEST ( - NAME H5MKGRP-${resultfile}${resultoption} - COMMAND $<TARGET_FILE:h5mkgrp> ${resultoption} ${PROJECT_BINARY_DIR}/../testfiles/${resultfile}.h5 ${ARGN} - ) - SET_TESTS_PROPERTIES (H5MKGRP-${resultfile}${resultoption} PROPERTIES DEPENDS H5MKGRP-clear-${resultfile}${resultoption}) - SET (last_test "H5MKGRP-${resultfile}${resultoption}") - IF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST ( - NAME H5MKGRP-h5ls-${resultfile}${resultoption} - COMMAND "${CMAKE_COMMAND}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>" - -D "TEST_ARGS:STRING=-v;-r;../testfiles/${resultfile}.h5" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_OUTPUT=${resultfile}.out" - -D "TEST_EXPECT=${resultcode}" - -D "TEST_MASK_MOD=true" - -D "TEST_REFERENCE=${resultfile}.ls" - -P "${HDF5_RESOURCES_DIR}/runTest.cmake" - ) - SET_TESTS_PROPERTIES (H5MKGRP-h5ls-${resultfile}${resultoption} PROPERTIES DEPENDS H5MKGRP-${resultfile}${resultoption}) - SET (last_test "H5MKGRP-h5ls-${resultfile}${resultoption}") - ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ELSE (NOT ${resultoption} STREQUAL " ") + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( - NAME H5MKGRP-clear-${resultfile} + NAME H5MKGRP-${resultfile}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove - ${PROJECT_BINARY_DIR}/../testfiles/${resultfile}.h5 - ${PROJECT_BINARY_DIR}/${resultfile}.out - ${PROJECT_BINARY_DIR}/${resultfile}.out.err + ${resultfile}.h5 + ${resultfile}.out + ${resultfile}.out.err ) + SET_TESTS_PROPERTIES (H5MKGRP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) + + ADD_TEST ( + NAME H5MKGRP-${resultfile} + COMMAND $<TARGET_FILE:h5mkgrp> ${resultoption} ${resultfile}.h5 ${ARGN} + ) + SET_TESTS_PROPERTIES (H5MKGRP-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + IF (HDF5_ENABLE_USING_MEMCHECKER) IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5MKGRP-clear-${resultfile} PROPERTIES DEPENDS ${last_test}) + SET_TESTS_PROPERTIES (H5MKGRP-${resultfile} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") + ELSE (HDF5_ENABLE_USING_MEMCHECKER) + SET_TESTS_PROPERTIES (H5MKGRP-${resultfile} PROPERTIES DEPENDS H5MKGRP-${resultfile}-clear-objects) ADD_TEST ( - NAME H5MKGRP-${resultfile} - COMMAND $<TARGET_FILE:h5mkgrp> ${PROJECT_BINARY_DIR}/../testfiles/${resultfile}.h5 ${ARGN} + NAME H5MKGRP-${resultfile}-h5ls + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>" + -D "TEST_ARGS:STRING=-v;-r;${resultfile}.h5" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_MASK_MOD=true" + -D "TEST_REFERENCE=${resultfile}.ls" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) - SET_TESTS_PROPERTIES (H5MKGRP-${resultfile} PROPERTIES DEPENDS H5MKGRP-clear-${resultfile}) - SET (last_test "H5MKGRP-${resultfile}") - IF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ADD_TEST ( - NAME H5MKGRP-h5ls-${resultfile} - COMMAND "${CMAKE_COMMAND}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>" - -D "TEST_ARGS:STRING=-v;-r;../testfiles/${resultfile}.h5" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_OUTPUT=${resultfile}.out" - -D "TEST_EXPECT=${resultcode}" - -D "TEST_MASK_MOD=true" - -D "TEST_REFERENCE=${resultfile}.ls" - -P "${HDF5_RESOURCES_DIR}/runTest.cmake" - ) - SET_TESTS_PROPERTIES (H5MKGRP-h5ls-${resultfile} PROPERTIES DEPENDS H5MKGRP-${resultfile}) - SET (last_test "H5MKGRP-h5ls-${resultfile}") - ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) - ENDIF (NOT ${resultoption} STREQUAL " ") + SET_TESTS_PROPERTIES (H5MKGRP-${resultfile}-h5ls PROPERTIES DEPENDS H5MKGRP-${resultfile}) + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_H5_TEST resultfile resultcode resultoption) MACRO (ADD_H5_CMP resultfile resultcode) - ADD_TEST ( - NAME H5MKGRP_CMP-clear-${resultfile} - COMMAND ${CMAKE_COMMAND} - -E remove - ${PROJECT_BINARY_DIR}/../testfiles/${resultfile}.h5 - ${PROJECT_BINARY_DIR}/${resultfile}.out - ${PROJECT_BINARY_DIR}/${resultfile}.out.err - ) IF (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST (NAME H5MKGRP_CMP-${resultfile} COMMAND $<TARGET_FILE:h5mkgrp> ${ARGN}) ELSE (HDF5_ENABLE_USING_MEMCHECKER) ADD_TEST ( + NAME H5MKGRP_CMP-${resultfile}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${resultfile}.h5 + ${resultfile}.out + ${resultfile}.out.err + ) + SET_TESTS_PROPERTIES (H5MKGRP_CMP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + ADD_TEST ( NAME H5MKGRP_CMP-${resultfile} COMMAND "${CMAKE_COMMAND}" -D "TEST_PROGRAM=$<TARGET_FILE:h5mkgrp>" -D "TEST_ARGS:STRING=${ARGN}" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" -D "TEST_OUTPUT=${resultfile}.out" -D "TEST_EXPECT=${resultcode}" -D "TEST_REFERENCE=${resultfile}.txt" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) + SET_TESTS_PROPERTIES (H5MKGRP_CMP-${resultfile} PROPERTIES DEPENDS H5MKGRP_CMP-${resultfile}-clear-objects) ENDIF (HDF5_ENABLE_USING_MEMCHECKER) - SET_TESTS_PROPERTIES (H5MKGRP_CMP-${resultfile} PROPERTIES DEPENDS H5MKGRP_CMP-clear-${resultfile}) ENDMACRO (ADD_H5_CMP resultfile resultcode) ############################################################################## @@ -242,71 +217,115 @@ IF (BUILD_TESTING) # Remove any output file left over from previous test run ADD_TEST ( - NAME h5repart_20K-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - fst_family00000.h5 + NAME H5REPART-clearall-objects + COMMAND ${CMAKE_COMMAND} + -E remove + fst_family00000.h5 + scd_family00000.h5 + scd_family00001.h5 + scd_family00002.h5 + scd_family00003.h5 + family_to_sec2.h5 ) + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5REPART-clearall-objects PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + SET (last_test "H5REPART-clearall-objects") + # repartition family member size to 20,000 bytes. - ADD_TEST (NAME h5repart_20K COMMAND $<TARGET_FILE:h5repart> -m 20000 family_file%05d.h5 fst_family%05d.h5) - SET_TESTS_PROPERTIES (h5repart_20K PROPERTIES DEPENDS h5repart_20K-clear-objects) + ADD_TEST (NAME H5REPART-h5repart_20K COMMAND $<TARGET_FILE:h5repart> -m 20000 family_file%05d.h5 fst_family%05d.h5) + SET_TESTS_PROPERTIES (H5REPART-h5repart_20K PROPERTIES DEPENDS H5REPART-clearall-objects) - # Remove any output file left over from previous test run - ADD_TEST ( - NAME h5repart_5K-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - scd_family00000.h5 - scd_family00001.h5 - scd_family00002.h5 - scd_family00003.h5 - ) - SET_TESTS_PROPERTIES (h5repart_5K-clear-objects PROPERTIES DEPENDS h5repart_20K) # repartition family member size to 5 KB. - ADD_TEST (NAME h5repart_5K COMMAND $<TARGET_FILE:h5repart> -m 5k family_file%05d.h5 scd_family%05d.h5) - SET_TESTS_PROPERTIES (h5repart_5K PROPERTIES DEPENDS h5repart_5K-clear-objects) + ADD_TEST (NAME H5REPART-h5repart_5K COMMAND $<TARGET_FILE:h5repart> -m 5k family_file%05d.h5 scd_family%05d.h5) + SET_TESTS_PROPERTIES (H5REPART-h5repart_5K PROPERTIES DEPENDS H5REPART-clearall-objects) - # Remove any output file left over from previous test run - ADD_TEST ( - NAME h5repart_sec2-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - family_to_sec2.h5 - ) - SET_TESTS_PROPERTIES (h5repart_sec2-clear-objects PROPERTIES DEPENDS h5repart_5K) # convert family file to sec2 file of 20,000 bytes - ADD_TEST (NAME h5repart_sec2 COMMAND $<TARGET_FILE:h5repart> -m 20000 -family_to_sec2 family_file%05d.h5 family_to_sec2.h5) - SET_TESTS_PROPERTIES (h5repart_sec2 PROPERTIES DEPENDS h5repart_sec2-clear-objects) + ADD_TEST (NAME H5REPART-h5repart_sec2 COMMAND $<TARGET_FILE:h5repart> -m 20000 -family_to_sec2 family_file%05d.h5 family_to_sec2.h5) + SET_TESTS_PROPERTIES (H5REPART-h5repart_sec2 PROPERTIES DEPENDS H5REPART-clearall-objects) # test the output files repartitioned above. - ADD_TEST (NAME h5repart_test COMMAND $<TARGET_FILE:h5repart_test>) - SET_TESTS_PROPERTIES (h5repart_test PROPERTIES DEPENDS h5repart_sec2) + ADD_TEST (NAME H5REPART-h5repart_test COMMAND $<TARGET_FILE:h5repart_test>) + SET_TESTS_PROPERTIES (H5REPART-h5repart_test PROPERTIES DEPENDS H5REPART-clearall-objects DEPENDS H5REPART-h5repart_20K DEPENDS H5REPART-h5repart_5K DEPENDS H5REPART-h5repart_sec2) SET (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} h5repart_test ) + + IF (HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST ( + NAME H5MKGRP-clearall-objects + COMMAND ${CMAKE_COMMAND} + -E remove + h5mkgrp_help.out + h5mkgrp_help.out.err + h5mkgrp_version.out + h5mkgrp_version.out.err + h5mkgrp_single.h5 + h5mkgrp_single.out + h5mkgrp_single.out.err + h5mkgrp_single_v.h5 + h5mkgrp_single_v.out + h5mkgrp_single_v.out.err + h5mkgrp_single_p.h5 + h5mkgrp_single_p.out + h5mkgrp_single_p.out.err + h5mkgrp_single_l.h5 + h5mkgrp_single_l.out + h5mkgrp_single_l.out.err + h5mkgrp_several.h5 + h5mkgrp_several.out + h5mkgrp_several.out.err + h5mkgrp_several_v.h5 + h5mkgrp_several_v.out + h5mkgrp_several_v.out.err + h5mkgrp_several_p.h5 + h5mkgrp_several_p.out + h5mkgrp_several_p.out.err + h5mkgrp_several_l.h5 + h5mkgrp_several_l.out + h5mkgrp_several_l.out.err + h5mkgrp_nested_p.h5 + h5mkgrp_nested_p.out + h5mkgrp_nested_p.out.err + h5mkgrp_nested_lp.h5 + h5mkgrp_nested_lp.out + h5mkgrp_nested_lp.out.err + h5mkgrp_nested_mult_p.h5 + h5mkgrp_nested_mult_p.out + h5mkgrp_nested_mult_p.out.err + h5mkgrp_nested_mult_lp.h5 + h5mkgrp_nested_mult_lp.out + h5mkgrp_nested_mult_lp.out.err + ) + SET_TESTS_PROPERTIES (H5MKGRP-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5MKGRP-clearall-objects PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + SET (last_test "H5MKGRP-clearall-objects") + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) # Check that help & version is displayed properly ADD_H5_CMP (h5mkgrp_help 0 "-h") ADD_H5_CMP (h5mkgrp_version 0 "-V") # Create single group at root level - ADD_H5_TEST (h5mkgrp_single 0 " " single) - ADD_H5_TEST (h5mkgrp_single 0 "-v" single) - ADD_H5_TEST (h5mkgrp_single 0 "-p" single) - ADD_H5_TEST (h5mkgrp_single_latest 0 "-l" latest) + ADD_H5_TEST (h5mkgrp_single 0 "" single) + ADD_H5_TEST (h5mkgrp_single_v 0 "-v" single) + ADD_H5_TEST (h5mkgrp_single_p 0 "-p" single) + ADD_H5_TEST (h5mkgrp_single_l 0 "-l" latest) # Create several groups at root level - ADD_H5_TEST (h5mkgrp_several 0 " " one two) - ADD_H5_TEST (h5mkgrp_several 0 "-v" one two) - ADD_H5_TEST (h5mkgrp_several 0 "-p" one two) - ADD_H5_TEST (h5mkgrp_several_latest 0 "-l" one two) + ADD_H5_TEST (h5mkgrp_several 0 "" one two) + ADD_H5_TEST (h5mkgrp_several_v 0 "-v" one two) + ADD_H5_TEST (h5mkgrp_several_p 0 "-p" one two) + ADD_H5_TEST (h5mkgrp_several_l 0 "-l" one two) # Create various nested groups - ADD_H5_TEST (h5mkgrp_nested 0 "-p" /one/two) - ADD_H5_TEST (h5mkgrp_nested_latest 0 "-lp" /one/two) - ADD_H5_TEST (h5mkgrp_nested_mult 0 "-p" /one/two /three/four) - ADD_H5_TEST (h5mkgrp_nested_mult_latest 0 "-lp" /one/two /three/four) + ADD_H5_TEST (h5mkgrp_nested_p 0 "-p" /one/two) + ADD_H5_TEST (h5mkgrp_nested_lp 0 "-lp" /one/two) + ADD_H5_TEST (h5mkgrp_nested_mult_p 0 "-p" /one/two /three/four) + ADD_H5_TEST (h5mkgrp_nested_mult_lp 0 "-lp" /one/two /three/four) ENDIF (BUILD_TESTING) ############################################################################## diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in index 8c2e1c1..3320276 100644 --- a/tools/misc/Makefile.in +++ b/tools/misc/Makefile.in @@ -288,6 +288,7 @@ H5_VERSION = @H5_VERSION@ HADDR_T = @HADDR_T@ HAVE_DMALLOC = @HAVE_DMALLOC@ HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@ +HAVE_PTHREAD = @HAVE_PTHREAD@ HDF5_HL = @HDF5_HL@ HDF5_INTERFACES = @HDF5_INTERFACES@ HDF_CXX = @HDF_CXX@ @@ -339,7 +340,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ -PTHREAD = @PTHREAD@ RANLIB = @RANLIB@ ROOT = @ROOT@ RUNPARALLEL = @RUNPARALLEL@ diff --git a/tools/misc/testh5mkgrp.sh.in b/tools/misc/testh5mkgrp.sh.in index dc127e8..5ec1a28 100644 --- a/tools/misc/testh5mkgrp.sh.in +++ b/tools/misc/testh5mkgrp.sh.in @@ -31,15 +31,85 @@ H5LS=h5ls # The h5ls tool name H5LS_ARGS=-vr # Arguments to the h5ls tool H5LS_BIN=`pwd`/../h5ls/$H5LS # The path of the h5ls tool binary +CMP='cmp' +DIFF='diff -c' +CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' + nerrors=0 verbose=yes -INDIR=$srcdir/../testfiles -OUTDIR=../testfiles +# source dirs +SRC_TOOLS="$srcdir/../" + +SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" +# testfiles source dirs for tools +SRC_H5MKGRP_TESTFILES="$SRC_TOOLS/misc/testfiles" + +TESTDIR=./testfiles +test -d $TESTDIR || mkdir -p $TESTDIR + +###################################################################### +# test files +# -------------------------------------------------------------------- +# All the test files copy from source directory to test directory +# NOTE: Keep this framework to add/remove test files. +# Any test files from other tools can be used in this framework. +# This list are also used for checking exist. +# Comment '#' without space can be used. +# -------------------------------------------------------------------- + CMP='cmp -s' DIFF='diff -c' -test -d $OUTDIR || mkdir $OUTDIR +# +# copy test files and expected output files from source dirs to test dir +# +COPY_TESTFILES=" +$SRC_H5MKGRP_TESTFILES/h5mkgrp_help.txt +$SRC_TOOLS_TESTFILES/h5mkgrp_single.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_single_v.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_single_p.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_single_l.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_several.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_several_v.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_several_p.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_several_l.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_nested_p.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_nested_lp.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_nested_mult_p.ls +$SRC_TOOLS_TESTFILES/h5mkgrp_nested_mult_lp.ls +" + +COPY_TESTFILES_TO_TESTDIR() +{ + # copy test files. Used -f to make sure get a new copy + for tstfile in $COPY_TESTFILES + do + # ignore '#' comment + echo $tstfile | tr -d ' ' | grep '^#' > /dev/null + RET=$? + if [ $RET -eq 1 ]; then + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi + fi + fi + done +} # Print a line-line message left justified in a field of 70 characters # beginning with the word "Testing". @@ -71,9 +141,7 @@ TOOLTEST() { TESTING $H5MKGRP $@ ( - echo "#############################" - echo " output for '$H5MKGRP $@'" - echo "#############################" + cd $TESTDIR $RUNSERIAL $H5MKGRP_BIN $@ ) > output.out RET=$? @@ -96,17 +164,15 @@ TOOLTEST() # H5LSTEST() { - expect="$INDIR/`basename $1 .h5`.ls" - actual="$OUTDIR/`basename $1 .h5`.out" + expect="$TESTDIR/`basename $1 .h5`.ls" + actual="$TESTDIR/`basename $1 .h5`.out" actual_sav=${actual}-sav # Stderr is included in stdout so that the diff can detect # any unexpected output from that stream too. VERIFY_H5LS $@ ( - echo "#############################" - echo "Expected output for '$H5LS $@'" - echo "#############################" + cd $TESTDIR $RUNSERIAL $H5LS_BIN $H5LS_ARGS $@ ) 2>&1 |sed 's/Modified:.*/Modified: XXXX-XX-XX XX:XX:XX XXX/' >$actual @@ -142,7 +208,7 @@ H5LSTEST() # $* are groups to create RUNTEST() { - FILEOUT=$OUTDIR/$1 + FILEOUT=$1 shift H5MKGRP_ARGS=$1 shift @@ -158,9 +224,8 @@ RUNTEST() # Remove output file created, if the "no cleanup" environment variable is # not defined -echo "FILEOUT=" $FILEOUT if test -z "$HDF5_NOCLEANUP"; then - rm -f $FILEOUT + rm -f $TESTDIR/$FILEOUT fi } @@ -172,16 +237,17 @@ echo "FILEOUT=" $FILEOUT # $* are groups to create CMPTEST() { - FILEOUT=$OUTDIR/$1 - expect="$srcdir/testfiles/`basename $1 .h5`.txt" - actual="$OUTDIR/`basename $1 .h5`.out" - actual_err="$OUTDIR/`basename $1 .h5`.err" + FILEOUT=$1 + expect="$TESTDIR/`basename $1 .h5`.txt" + actual="$TESTDIR/`basename $1 .h5`.out" + actual_err="$TESTDIR/`basename $1 .h5`.err" shift # Stderr is included in stdout so that the diff can detect # any unexpected output from that stream too. TESTING $H5MKGRP $@ ( + cd $TESTDIR $RUNSERIAL $H5MKGRP_BIN $@ ) >$actual 2>$actual_err cat $actual_err >> $actual @@ -208,28 +274,30 @@ CMPTEST() ############################################################################## ### T H E T E S T S ### ############################################################################## +# prepare for test +COPY_TESTFILES_TO_TESTDIR # Check that help & version is displayed properly CMPTEST h5mkgrp_help.h5 "-h" -RUNTEST h5mkgrp_version.h5 "-V" +#CMPTEST h5mkgrp_version.h5 "-V" # Create single group at root level RUNTEST h5mkgrp_single.h5 " " single -RUNTEST h5mkgrp_single.h5 "-v" single -RUNTEST h5mkgrp_single.h5 "-p" single -RUNTEST h5mkgrp_single_latest.h5 "-l" latest +RUNTEST h5mkgrp_single_v.h5 "-v" single +RUNTEST h5mkgrp_single_p.h5 "-p" single +RUNTEST h5mkgrp_single_l.h5 "-l" latest # Create several groups at root level RUNTEST h5mkgrp_several.h5 " " one two -RUNTEST h5mkgrp_several.h5 "-v" one two -RUNTEST h5mkgrp_several.h5 "-p" one two -RUNTEST h5mkgrp_several_latest.h5 "-l" one two +RUNTEST h5mkgrp_several_v.h5 "-v" one two +RUNTEST h5mkgrp_several_p.h5 "-p" one two +RUNTEST h5mkgrp_several_l.h5 "-l" one two # Create various nested groups -RUNTEST h5mkgrp_nested.h5 "-p" /one/two -RUNTEST h5mkgrp_nested_latest.h5 "-lp" /one/two -RUNTEST h5mkgrp_nested_mult.h5 "-p" /one/two /three/four -RUNTEST h5mkgrp_nested_mult_latest.h5 "-lp" /one/two /three/four +RUNTEST h5mkgrp_nested_p.h5 "-p" /one/two +RUNTEST h5mkgrp_nested_lp.h5 "-lp" /one/two +RUNTEST h5mkgrp_nested_mult_p.h5 "-p" /one/two /three/four +RUNTEST h5mkgrp_nested_mult_lp.h5 "-lp" /one/two /three/four if test $nerrors -eq 0 ; then diff --git a/tools/testfiles/h5mkgrp_help.ls b/tools/testfiles/h5mkgrp_help.ls deleted file mode 100644 index ad2bd0f..0000000 --- a/tools/testfiles/h5mkgrp_help.ls +++ /dev/null @@ -1,4 +0,0 @@ -############################# -Expected output for 'h5ls ../testfiles/h5mkgrp_help.h5' -############################# -../testfiles/h5mkgrp_help.h5: unable to open file diff --git a/tools/testfiles/h5mkgrp_nested_latest.ls b/tools/testfiles/h5mkgrp_nested_lp.ls index c00292d..1fe8ce8 100644 --- a/tools/testfiles/h5mkgrp_nested_latest.ls +++ b/tools/testfiles/h5mkgrp_nested_lp.ls @@ -1,7 +1,4 @@ -############################# -Expected output for 'h5ls ../testfiles/h5mkgrp_nested_latest.h5' -############################# -Opened "../testfiles/h5mkgrp_nested_latest.h5" with sec2 driver. +Opened "h5mkgrp_nested_lp.h5" with sec2 driver. / Group Location: 1:48 Links: 1 diff --git a/tools/testfiles/h5mkgrp_nested_mult_latest.ls b/tools/testfiles/h5mkgrp_nested_mult_lp.ls index 0b19ff9..50380ec 100644 --- a/tools/testfiles/h5mkgrp_nested_mult_latest.ls +++ b/tools/testfiles/h5mkgrp_nested_mult_lp.ls @@ -1,7 +1,4 @@ -############################# -Expected output for 'h5ls ../testfiles/h5mkgrp_nested_mult_latest.h5' -############################# -Opened "../testfiles/h5mkgrp_nested_mult_latest.h5" with sec2 driver. +Opened "h5mkgrp_nested_mult_lp.h5" with sec2 driver. / Group Location: 1:48 Links: 1 diff --git a/tools/testfiles/h5mkgrp_nested_mult.ls b/tools/testfiles/h5mkgrp_nested_mult_p.ls index 6a22ffd..f2b3b4b 100644 --- a/tools/testfiles/h5mkgrp_nested_mult.ls +++ b/tools/testfiles/h5mkgrp_nested_mult_p.ls @@ -1,7 +1,4 @@ -############################# -Expected output for 'h5ls ../testfiles/h5mkgrp_nested_mult.h5' -############################# -Opened "../testfiles/h5mkgrp_nested_mult.h5" with sec2 driver. +Opened "h5mkgrp_nested_mult_p.h5" with sec2 driver. / Group Location: 1:96 Links: 1 diff --git a/tools/testfiles/h5mkgrp_nested.ls b/tools/testfiles/h5mkgrp_nested_p.ls index 472656d..3034dbb 100644 --- a/tools/testfiles/h5mkgrp_nested.ls +++ b/tools/testfiles/h5mkgrp_nested_p.ls @@ -1,7 +1,4 @@ -############################# -Expected output for 'h5ls ../testfiles/h5mkgrp_nested.h5' -############################# -Opened "../testfiles/h5mkgrp_nested.h5" with sec2 driver. +Opened "h5mkgrp_nested_p.h5" with sec2 driver. / Group Location: 1:96 Links: 1 diff --git a/tools/testfiles/h5mkgrp_several.ls b/tools/testfiles/h5mkgrp_several.ls index bbf5c92..68a3f9c 100644 --- a/tools/testfiles/h5mkgrp_several.ls +++ b/tools/testfiles/h5mkgrp_several.ls @@ -1,7 +1,4 @@ -############################# -Expected output for 'h5ls ../testfiles/h5mkgrp_several.h5' -############################# -Opened "../testfiles/h5mkgrp_several.h5" with sec2 driver. +Opened "h5mkgrp_several.h5" with sec2 driver. / Group Location: 1:96 Links: 1 diff --git a/tools/testfiles/h5mkgrp_several_latest.ls b/tools/testfiles/h5mkgrp_several_l.ls index a3b5224..5e1b4be 100644 --- a/tools/testfiles/h5mkgrp_several_latest.ls +++ b/tools/testfiles/h5mkgrp_several_l.ls @@ -1,7 +1,4 @@ -############################# -Expected output for 'h5ls ../testfiles/h5mkgrp_several_latest.h5' -############################# -Opened "../testfiles/h5mkgrp_several_latest.h5" with sec2 driver. +Opened "h5mkgrp_several_l.h5" with sec2 driver. / Group Location: 1:48 Links: 1 diff --git a/tools/testfiles/h5mkgrp_several_p.ls b/tools/testfiles/h5mkgrp_several_p.ls new file mode 100644 index 0000000..43f1ce5 --- /dev/null +++ b/tools/testfiles/h5mkgrp_several_p.ls @@ -0,0 +1,10 @@ +Opened "h5mkgrp_several_p.h5" with sec2 driver. +/ Group + Location: 1:96 + Links: 1 +/one Group + Location: 1:800 + Links: 1 +/two Group + Location: 1:1832 + Links: 1 diff --git a/tools/testfiles/h5mkgrp_several_v.ls b/tools/testfiles/h5mkgrp_several_v.ls new file mode 100644 index 0000000..a6df87b --- /dev/null +++ b/tools/testfiles/h5mkgrp_several_v.ls @@ -0,0 +1,10 @@ +Opened "h5mkgrp_several_v.h5" with sec2 driver. +/ Group + Location: 1:96 + Links: 1 +/one Group + Location: 1:800 + Links: 1 +/two Group + Location: 1:1832 + Links: 1 diff --git a/tools/testfiles/h5mkgrp_single.ls b/tools/testfiles/h5mkgrp_single.ls index e9932f7..f2bd01c 100644 --- a/tools/testfiles/h5mkgrp_single.ls +++ b/tools/testfiles/h5mkgrp_single.ls @@ -1,7 +1,4 @@ -############################# -Expected output for 'h5ls ../testfiles/h5mkgrp_single.h5' -############################# -Opened "../testfiles/h5mkgrp_single.h5" with sec2 driver. +Opened "h5mkgrp_single.h5" with sec2 driver. / Group Location: 1:96 Links: 1 diff --git a/tools/testfiles/h5mkgrp_single_latest.ls b/tools/testfiles/h5mkgrp_single_l.ls index b6e6ea4..1763a61 100644 --- a/tools/testfiles/h5mkgrp_single_latest.ls +++ b/tools/testfiles/h5mkgrp_single_l.ls @@ -1,7 +1,4 @@ -############################# -Expected output for 'h5ls ../testfiles/h5mkgrp_single_latest.h5' -############################# -Opened "../testfiles/h5mkgrp_single_latest.h5" with sec2 driver. +Opened "h5mkgrp_single_l.h5" with sec2 driver. / Group Location: 1:48 Links: 1 diff --git a/tools/testfiles/h5mkgrp_single_p.ls b/tools/testfiles/h5mkgrp_single_p.ls new file mode 100644 index 0000000..e82dc31 --- /dev/null +++ b/tools/testfiles/h5mkgrp_single_p.ls @@ -0,0 +1,7 @@ +Opened "h5mkgrp_single_p.h5" with sec2 driver. +/ Group + Location: 1:96 + Links: 1 +/single Group + Location: 1:800 + Links: 1 diff --git a/tools/testfiles/h5mkgrp_single_v.ls b/tools/testfiles/h5mkgrp_single_v.ls new file mode 100644 index 0000000..7360865 --- /dev/null +++ b/tools/testfiles/h5mkgrp_single_v.ls @@ -0,0 +1,7 @@ +Opened "h5mkgrp_single_v.h5" with sec2 driver. +/ Group + Location: 1:96 + Links: 1 +/single Group + Location: 1:800 + Links: 1 diff --git a/tools/testfiles/h5mkgrp_version.ls b/tools/testfiles/h5mkgrp_version.ls deleted file mode 100644 index 907f0ad..0000000 --- a/tools/testfiles/h5mkgrp_version.ls +++ /dev/null @@ -1,4 +0,0 @@ -############################# -Expected output for 'h5ls ../testfiles/h5mkgrp_version.h5' -############################# -../testfiles/h5mkgrp_version.h5: unable to open file |