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-rw-r--r--tools/h5repack/h5repack.h3
-rw-r--r--tools/h5repack/h5repack_copy.c36
-rw-r--r--tools/h5repack/h5repack_filters.c4
-rw-r--r--tools/h5repack/h5repack_main.c34
-rw-r--r--tools/h5repack/h5repack_opttable.c26
-rw-r--r--tools/h5repack/h5repack_parse.c45
-rw-r--r--tools/h5repack/h5repack_refs.c5
7 files changed, 66 insertions, 87 deletions
diff --git a/tools/h5repack/h5repack.h b/tools/h5repack/h5repack.h
index 4d601ec..6415d3a 100644
--- a/tools/h5repack/h5repack.h
+++ b/tools/h5repack/h5repack.h
@@ -17,8 +17,7 @@
#ifndef H5REPACK_H__
#define H5REPACK_H__
-#include <assert.h>
-#include <string.h>
+#include "H5private.h"
#include "hdf5.h"
#include "h5trav.h"
diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c
index f849697..5153cc4 100644
--- a/tools/h5repack/h5repack_copy.c
+++ b/tools/h5repack/h5repack_copy.c
@@ -13,11 +13,7 @@
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-#include <stdlib.h>
-#include <string.h>
-#include <stdio.h>
#include "h5repack.h"
-#include "H5private.h"
#include "h5tools.h"
#include "h5tools_utils.h"
@@ -689,7 +685,7 @@ int do_copy_objects(hid_t fidin,
/* check if filters were requested for individual objects */
for (u = 0; u < options->op_tbl->nelems; u++) {
- if (strcmp(travt->objs[i].name, options->op_tbl->objs[u].path) == 0) {
+ if (HDstrcmp(travt->objs[i].name, options->op_tbl->objs[u].path) == 0) {
if (options->op_tbl->objs[u].filter->filtn > 0) {
req_filter = 1;
}
@@ -1221,7 +1217,7 @@ static void print_dataset_info(hid_t dcpl_id,
int i;
- strcpy(strfilter,"\0");
+ HDstrcpy(strfilter,"\0");
/* get information about input filters */
if((nfilters = H5Pget_nfilters(dcpl_id)) < 0)
@@ -1238,51 +1234,51 @@ static void print_dataset_info(hid_t dcpl_id,
break;
case H5Z_FILTER_DEFLATE:
- strcat(strfilter,"GZIP ");
+ HDstrcat(strfilter,"GZIP ");
#if defined (PRINT_DEBUG)
{
unsigned level=cd_values[0];
sprintf(temp,"(%d)",level);
- strcat(strfilter,temp);
+ HDstrcat(strfilter,temp);
}
#endif
break;
case H5Z_FILTER_SZIP:
- strcat(strfilter,"SZIP ");
+ HDstrcat(strfilter,"SZIP ");
#if defined (PRINT_DEBUG)
{
unsigned options_mask=cd_values[0]; /* from dcpl, not filt*/
unsigned ppb=cd_values[1];
sprintf(temp,"(%d,",ppb);
- strcat(strfilter,temp);
+ HDstrcat(strfilter,temp);
if (options_mask & H5_SZIP_EC_OPTION_MASK)
- strcpy(temp,"EC) ");
+ HDstrcpy(temp,"EC) ");
else if (options_mask & H5_SZIP_NN_OPTION_MASK)
- strcpy(temp,"NN) ");
+ HDstrcpy(temp,"NN) ");
}
- strcat(strfilter,temp);
+ HDstrcat(strfilter,temp);
#endif
break;
case H5Z_FILTER_SHUFFLE:
- strcat(strfilter,"SHUF ");
+ HDstrcat(strfilter,"SHUF ");
break;
case H5Z_FILTER_FLETCHER32:
- strcat(strfilter,"FLET ");
+ HDstrcat(strfilter,"FLET ");
break;
case H5Z_FILTER_NBIT:
- strcat(strfilter,"NBIT ");
+ HDstrcat(strfilter,"NBIT ");
break;
case H5Z_FILTER_SCALEOFFSET:
- strcat(strfilter,"SCALEOFFSET ");
+ HDstrcat(strfilter,"SCALEOFFSET ");
break;
} /* switch */
}/*i*/
@@ -1292,10 +1288,10 @@ static void print_dataset_info(hid_t dcpl_id,
else
{
char str[255], temp[20];
- strcpy(str,"dset ");
- strcat(str,strfilter);
+ HDstrcpy(str,"dset ");
+ HDstrcat(str,strfilter);
sprintf(temp," (%.3f:1)",ratio);
- strcat(str,temp);
+ HDstrcat(str,temp);
printf(FORMAT_OBJ,str,objname);
}
}
diff --git a/tools/h5repack/h5repack_filters.c b/tools/h5repack/h5repack_filters.c
index c7d8b1e..213ff65 100644
--- a/tools/h5repack/h5repack_filters.c
+++ b/tools/h5repack/h5repack_filters.c
@@ -44,13 +44,13 @@ int aux_find_obj(const char* name, /* object name from traverse list */
for ( i=0; i<options->op_tbl->nelems; i++)
{
- if (strcmp(options->op_tbl->objs[i].path,name)==0)
+ if (HDstrcmp(options->op_tbl->objs[i].path,name)==0)
{
*obj = options->op_tbl->objs[i];
return i;
}
- pdest = strstr(name,options->op_tbl->objs[i].path);
+ pdest = HDstrstr(name,options->op_tbl->objs[i].path);
result = (int)(pdest - name);
/* found at position 1, meaning without '/' */
diff --git a/tools/h5repack/h5repack_main.c b/tools/h5repack/h5repack_main.c
index 7d2fc62..99d700d 100644
--- a/tools/h5repack/h5repack_main.c
+++ b/tools/h5repack/h5repack_main.c
@@ -13,10 +13,6 @@
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-#include <stdlib.h>
-#include <string.h>
-#include <ctype.h>
-
#include "h5tools_utils.h"
#include "h5repack.h"
@@ -124,7 +120,7 @@ int main(int argc, const char **argv)
infile = argv[ opt_ind ];
outfile = argv[ opt_ind + 1 ];
- if ( strcmp( infile, outfile ) == 0 )
+ if ( HDstrcmp( infile, outfile ) == 0 )
{
error_msg("file names cannot be the same\n");
usage(h5tools_getprogname());
@@ -390,7 +386,7 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options)
int idx = 0;
int ssize = 0;
- char *msgPtr = strchr( opt_arg, ':');
+ char *msgPtr = HDstrchr( opt_arg, ':');
options->latest = 1; /* must use latest format */
if (msgPtr == NULL)
{
@@ -401,22 +397,22 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options)
else
{
char msgType[10];
- strcpy(msgType, msgPtr+1);
+ HDstrcpy(msgType, msgPtr+1);
msgPtr[0] = '\0';
ssize = atoi( opt_arg );
- if (strncmp(msgType, "dspace",6) == 0) {
+ if (HDstrncmp(msgType, "dspace",6) == 0) {
options->msg_size[0] = ssize;
}
- else if (strncmp(msgType, "dtype", 5) == 0) {
+ else if (HDstrncmp(msgType, "dtype", 5) == 0) {
options->msg_size[1] = ssize;
}
- else if (strncmp(msgType, "fill", 4) == 0) {
+ else if (HDstrncmp(msgType, "fill", 4) == 0) {
options->msg_size[2] = ssize;
}
- else if (strncmp(msgType, "pline", 5) == 0) {
+ else if (HDstrncmp(msgType, "pline", 5) == 0) {
options->msg_size[3] = ssize;
}
- else if (strncmp(msgType, "attr", 4) == 0) {
+ else if (HDstrncmp(msgType, "attr", 4) == 0) {
options->msg_size[4] = ssize;
}
}
@@ -454,14 +450,14 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options)
{
char strategy[MAX_NC_NAME];
- strcpy(strategy, opt_arg);
- if(!strcmp(strategy, "ALL_PERSIST"))
+ HDstrcpy(strategy, opt_arg);
+ if(!HDstrcmp(strategy, "ALL_PERSIST"))
options->fs_strategy = H5F_FILE_SPACE_ALL_PERSIST;
- else if(!strcmp(strategy, "ALL"))
+ else if(!HDstrcmp(strategy, "ALL"))
options->fs_strategy = H5F_FILE_SPACE_ALL;
- else if(!strcmp(strategy, "AGGR_VFD"))
+ else if(!HDstrcmp(strategy, "AGGR_VFD"))
options->fs_strategy = H5F_FILE_SPACE_AGGR_VFD;
- else if(!strcmp(strategy, "VFD"))
+ else if(!HDstrcmp(strategy, "VFD"))
options->fs_strategy = H5F_FILE_SPACE_VFD;
else {
error_msg("invalid file space management strategy\n", opt_arg );
@@ -533,7 +529,7 @@ void read_info(const char *filename,
* filter
*-------------------------------------------------------------------------
*/
- if (strcmp(stype,"-f") == 0) {
+ if (HDstrcmp(stype,"-f") == 0) {
/* find begining of info */
i=0; c='0';
@@ -563,7 +559,7 @@ void read_info(const char *filename,
* layout
*-------------------------------------------------------------------------
*/
- else if (strcmp(stype,"-l") == 0) {
+ else if (HDstrcmp(stype,"-l") == 0) {
/* find begining of info */
i=0; c='0';
diff --git a/tools/h5repack/h5repack_opttable.c b/tools/h5repack/h5repack_opttable.c
index 50f97bd..57b5fa7 100644
--- a/tools/h5repack/h5repack_opttable.c
+++ b/tools/h5repack/h5repack_opttable.c
@@ -13,8 +13,6 @@
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-#include <stdlib.h>
-#include <string.h>
#include "h5repack.h"
#include "h5tools_utils.h"
@@ -32,7 +30,7 @@ void init_packobject(pack_info_t *obj)
{
int j, k;
- strcpy(obj->path,"\0");
+ HDstrcpy(obj->path,"\0");
for ( j=0; j<H5_REPACK_MAX_NFILTERS; j++)
{
obj->filter[j].filtn = -1;
@@ -225,7 +223,7 @@ int options_add_layout( obj_list_t *obj_list,
for (i = 0; i < table->nelems; i++)
{
/*already on the table */
- if (strcmp(obj_list[j].obj,table->objs[i].path)==0)
+ if (HDstrcmp(obj_list[j].obj,table->objs[i].path)==0)
{
/* already chunk info inserted for this one; exit */
if (table->objs[i].chunk.rank>0)
@@ -248,7 +246,7 @@ int options_add_layout( obj_list_t *obj_list,
/* keep the grow in a temp var */
I = table->nelems + added;
added++;
- strcpy(table->objs[I].path,obj_list[j].obj);
+ HDstrcpy(table->objs[I].path,obj_list[j].obj);
aux_tblinsert_layout(table,I,pack);
}
/* cases where we have an already inserted name but there is a new name also
@@ -256,12 +254,12 @@ int options_add_layout( obj_list_t *obj_list,
-f dset1:GZIP=1 -l dset1,dset2:CHUNK=20x20
dset1 is already inserted, but dset2 must also be
*/
- else if (found==1 && strcmp(obj_list[j].obj,table->objs[i].path)!=0)
+ else if (found==1 && HDstrcmp(obj_list[j].obj,table->objs[i].path)!=0)
{
/* keep the grow in a temp var */
I = table->nelems + added;
added++;
- strcpy(table->objs[I].path,obj_list[j].obj);
+ HDstrcpy(table->objs[I].path,obj_list[j].obj);
aux_tblinsert_layout(table,I,pack);
}
} /* j */
@@ -275,7 +273,7 @@ int options_add_layout( obj_list_t *obj_list,
{
I = table->nelems + added;
added++;
- strcpy(table->objs[I].path,obj_list[j].obj);
+ HDstrcpy(table->objs[I].path,obj_list[j].obj);
aux_tblinsert_layout(table,I,pack);
}
@@ -324,7 +322,7 @@ int options_add_filter(obj_list_t *obj_list,
for (i = 0; i < table->nelems; i++)
{
/*already on the table */
- if (strcmp(obj_list[j].obj,table->objs[i].path)==0)
+ if (HDstrcmp(obj_list[j].obj,table->objs[i].path)==0)
{
/* insert */
aux_tblinsert_filter(table,i,filt);
@@ -338,7 +336,7 @@ int options_add_filter(obj_list_t *obj_list,
/* keep the grow in a temp var */
I = table->nelems + added;
added++;
- strcpy(table->objs[I].path,obj_list[j].obj);
+ HDstrcpy(table->objs[I].path,obj_list[j].obj);
aux_tblinsert_filter(table,I,filt);
}
/* cases where we have an already inserted name but there is a new name also
@@ -346,12 +344,12 @@ int options_add_filter(obj_list_t *obj_list,
-l dset1:CHUNK=20x20 -f dset1,dset2:GZIP=1
dset1 is already inserted, but dset2 must also be
*/
- else if (found==1 && strcmp(obj_list[j].obj,table->objs[i].path)!=0)
+ else if (found==1 && HDstrcmp(obj_list[j].obj,table->objs[i].path)!=0)
{
/* keep the grow in a temp var */
I = table->nelems + added;
added++;
- strcpy(table->objs[I].path,obj_list[j].obj);
+ HDstrcpy(table->objs[I].path,obj_list[j].obj);
aux_tblinsert_filter(table,I,filt);
}
} /* j */
@@ -365,7 +363,7 @@ int options_add_filter(obj_list_t *obj_list,
{
I = table->nelems + added;
added++;
- strcpy(table->objs[I].path,obj_list[j].obj);
+ HDstrcpy(table->objs[I].path,obj_list[j].obj);
aux_tblinsert_filter(table,I,filt);
}
}
@@ -393,7 +391,7 @@ pack_info_t* options_get_object( const char *path,
for ( i = 0; i < table->nelems; i++)
{
/* found it */
- if (strcmp(table->objs[i].path,path)==0)
+ if (HDstrcmp(table->objs[i].path,path)==0)
{
return (&table->objs[i]);
}
diff --git a/tools/h5repack/h5repack_parse.c b/tools/h5repack/h5repack_parse.c
index d3a7419..d3c6014 100644
--- a/tools/h5repack/h5repack_parse.c
+++ b/tools/h5repack/h5repack_parse.c
@@ -13,11 +13,6 @@
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-#include <stdlib.h>
-#include <string.h>
-#include <stdio.h>
-#include <ctype.h>
-
#include "h5repack.h"
#include "h5tools_utils.h"
@@ -109,7 +104,7 @@ obj_list_t* parse_filter(const char *str,
if ( c==',' || j==end_obj-1)
{
if ( c==',') sobj[k]='\0'; else sobj[k+1]='\0';
- strcpy(obj_list[n].obj,sobj);
+ HDstrcpy(obj_list[n].obj,sobj);
memset(sobj,0,sizeof(sobj));
n++;
k=-1;
@@ -143,7 +138,7 @@ obj_list_t* parse_filter(const char *str,
* example SZIP=8,NN
*-------------------------------------------------------------------------
*/
- if (strcmp(scomp,"SZIP")==0)
+ if (HDstrcmp(scomp,"SZIP")==0)
{
l=-1; /* mask index check */
for ( m=0,u=i+1; u<len; u++,m++)
@@ -171,9 +166,9 @@ obj_list_t* parse_filter(const char *str,
smask[l]='\0';
i=len-1; /* end */
(*n_objs)--; /* we counted an extra ',' */
- if (strcmp(smask,"NN")==0)
+ if (HDstrcmp(smask,"NN")==0)
filt->cd_values[j++]=H5_SZIP_NN_OPTION_MASK;
- else if (strcmp(smask,"EC")==0)
+ else if (HDstrcmp(smask,"EC")==0)
filt->cd_values[j++]=H5_SZIP_EC_OPTION_MASK;
else
{
@@ -203,7 +198,7 @@ obj_list_t* parse_filter(const char *str,
*-------------------------------------------------------------------------
*/
- else if (strcmp(scomp,"SOFF")==0)
+ else if (HDstrcmp(scomp,"SOFF")==0)
{
l=-1; /* mask index check */
for ( m=0,u=i+1; u<len; u++,m++)
@@ -231,9 +226,9 @@ obj_list_t* parse_filter(const char *str,
smask[l]='\0';
i=len-1; /* end */
(*n_objs)--; /* we counted an extra ',' */
- if (strcmp(smask,"IN")==0)
+ if (HDstrcmp(smask,"IN")==0)
filt->cd_values[j++]=H5Z_SO_INT;
- else if (strcmp(smask,"DS")==H5Z_SO_FLOAT_DSCALE)
+ else if (HDstrcmp(smask,"DS")==H5Z_SO_FLOAT_DSCALE)
filt->cd_values[j++]=H5Z_SO_FLOAT_DSCALE;
else
{
@@ -290,7 +285,7 @@ obj_list_t* parse_filter(const char *str,
* H5Z_FILTER_NONE
*-------------------------------------------------------------------------
*/
- if (strcmp(scomp,"NONE")==0)
+ if (HDstrcmp(scomp,"NONE")==0)
{
filt->filtn=H5Z_FILTER_NONE;
filt->cd_nelmts = 0;
@@ -300,7 +295,7 @@ obj_list_t* parse_filter(const char *str,
* H5Z_FILTER_DEFLATE
*-------------------------------------------------------------------------
*/
- else if (strcmp(scomp,"GZIP")==0)
+ else if (HDstrcmp(scomp,"GZIP")==0)
{
filt->filtn=H5Z_FILTER_DEFLATE;
filt->cd_nelmts = 1;
@@ -316,7 +311,7 @@ obj_list_t* parse_filter(const char *str,
* H5Z_FILTER_SZIP
*-------------------------------------------------------------------------
*/
- else if (strcmp(scomp,"SZIP")==0)
+ else if (HDstrcmp(scomp,"SZIP")==0)
{
filt->filtn=H5Z_FILTER_SZIP;
filt->cd_nelmts = 2;
@@ -332,7 +327,7 @@ obj_list_t* parse_filter(const char *str,
* H5Z_FILTER_SHUFFLE
*-------------------------------------------------------------------------
*/
- else if (strcmp(scomp,"SHUF")==0)
+ else if (HDstrcmp(scomp,"SHUF")==0)
{
filt->filtn=H5Z_FILTER_SHUFFLE;
filt->cd_nelmts = 0;
@@ -347,7 +342,7 @@ obj_list_t* parse_filter(const char *str,
* H5Z_FILTER_FLETCHER32
*-------------------------------------------------------------------------
*/
- else if (strcmp(scomp,"FLET")==0)
+ else if (HDstrcmp(scomp,"FLET")==0)
{
filt->filtn=H5Z_FILTER_FLETCHER32;
filt->cd_nelmts = 0;
@@ -362,7 +357,7 @@ obj_list_t* parse_filter(const char *str,
* H5Z_FILTER_NBIT
*-------------------------------------------------------------------------
*/
- else if (strcmp(scomp,"NBIT")==0)
+ else if (HDstrcmp(scomp,"NBIT")==0)
{
filt->filtn=H5Z_FILTER_NBIT;
filt->cd_nelmts = 0;
@@ -377,7 +372,7 @@ obj_list_t* parse_filter(const char *str,
* H5Z_FILTER_SCALEOFFSET
*-------------------------------------------------------------------------
*/
- else if (strcmp(scomp,"SOFF")==0)
+ else if (HDstrcmp(scomp,"SOFF")==0)
{
filt->filtn=H5Z_FILTER_SCALEOFFSET;
filt->cd_nelmts = 2;
@@ -437,7 +432,7 @@ obj_list_t* parse_filter(const char *str,
error_msg("pixels_per_block is too large in <%s>\n",str);
exit(EXIT_FAILURE);
}
- if ( (strcmp(smask,"NN")!=0) && (strcmp(smask,"EC")!=0) )
+ if ( (HDstrcmp(smask,"NN")!=0) && (HDstrcmp(smask,"EC")!=0) )
{
if (obj_list) free(obj_list);
error_msg("szip mask must be 'NN' or 'EC' \n");
@@ -530,7 +525,7 @@ obj_list_t* parse_layout(const char *str,
if ( c==',' || j==end_obj-1)
{
if ( c==',') sobj[k]='\0'; else sobj[k+1]='\0';
- strcpy(obj_list[n].obj,sobj);
+ HDstrcpy(obj_list[n].obj,sobj);
memset(sobj,0,sizeof(sobj));
n++;
k=-1;
@@ -551,11 +546,11 @@ obj_list_t* parse_layout(const char *str,
if (n==5)
{
slayout[n]='\0'; /*cut string */
- if (strcmp(slayout,"COMPA")==0)
+ if (HDstrcmp(slayout,"COMPA")==0)
pack->layout=H5D_COMPACT;
- else if (strcmp(slayout,"CONTI")==0)
+ else if (HDstrcmp(slayout,"CONTI")==0)
pack->layout=H5D_CONTIGUOUS;
- else if (strcmp(slayout,"CHUNK")==0)
+ else if (HDstrcmp(slayout,"CHUNK")==0)
pack->layout=H5D_CHUNKED;
else {
error_msg("in parse layout, not a valid layout in <%s>\n",str);
@@ -618,7 +613,7 @@ obj_list_t* parse_layout(const char *str,
else if (i==len-1) { /*no more parameters */
sdim[k]='\0';
k=0;
- if (strcmp(sdim,"NONE")==0)
+ if (HDstrcmp(sdim,"NONE")==0)
{
pack->chunk.rank=-2;
}
diff --git a/tools/h5repack/h5repack_refs.c b/tools/h5repack/h5repack_refs.c
index aa2e823..091133e 100644
--- a/tools/h5repack/h5repack_refs.c
+++ b/tools/h5repack/h5repack_refs.c
@@ -14,12 +14,7 @@
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-#include <stdlib.h>
-#include <string.h>
-#include <stdio.h>
#include "h5repack.h"
-#include "H5private.h"
#include "h5diff.h"
#include "h5tools.h"
generated by cgit v0.12 at 2024-08-25 01:32:47 (GMT)