diff options
| -rw-r--r-- | README.txt | 2 | ||||
| -rwxr-xr-x | c++/configure | 20 | ||||
| -rw-r--r-- | c++/configure.in | 2 | ||||
| -rwxr-xr-x | configure | 20 | ||||
| -rw-r--r-- | configure.in | 2 | ||||
| -rw-r--r-- | doc/html/ADGuide/HISTORY.txt | 520 | ||||
| -rw-r--r-- | doc/html/ADGuide/RELEASE.txt | 61 | ||||
| -rwxr-xr-x | fortran/configure | 20 | ||||
| -rw-r--r-- | fortran/configure.in | 2 | ||||
| -rw-r--r-- | release_docs/RELEASE.txt | 2 | ||||
| -rw-r--r-- | src/H5public.h | 4 |
11 files changed, 587 insertions, 68 deletions
@@ -1,4 +1,4 @@ -HDF5 version 1.6.7-snap0 currently under development +HDF5 version 1.6.7-snap1 currently under development Please refer to the release_docs/INSTALL file for installation instructions. ------------------------------------------------------------------------------ January 28, 2007 diff --git a/c++/configure b/c++/configure index 754ded4..78295e9 100755 --- a/c++/configure +++ b/c++/configure @@ -1,7 +1,7 @@ #! /bin/sh -# From c++/configure.in Id: configure.in 14461 2008-01-28 19:59:31Z epourmal . +# From c++/configure.in Id: configure.in 14482 2008-02-01 04:08:30Z epourmal . # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.61 for HDF5 C++ 1.6.7-snap0. +# Generated by GNU Autoconf 2.61 for HDF5 C++ 1.6.7-snap1. # # Report bugs to <help@hdfgroup.org>. # @@ -734,8 +734,8 @@ SHELL=${CONFIG_SHELL-/bin/sh} # Identity of this package. PACKAGE_NAME='HDF5 C++' PACKAGE_TARNAME='hdf5-c--' -PACKAGE_VERSION='1.6.7-snap0' -PACKAGE_STRING='HDF5 C++ 1.6.7-snap0' +PACKAGE_VERSION='1.6.7-snap1' +PACKAGE_STRING='HDF5 C++ 1.6.7-snap1' PACKAGE_BUGREPORT='help@hdfgroup.org' ac_unique_file="src/H5Library.cpp" @@ -1375,7 +1375,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 C++ 1.6.7-snap0 to adapt to many kinds of systems. +\`configure' configures HDF5 C++ 1.6.7-snap1 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1440,7 +1440,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 C++ 1.6.7-snap0:";; + short | recursive ) echo "Configuration of HDF5 C++ 1.6.7-snap1:";; esac cat <<\_ACEOF @@ -1545,7 +1545,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 C++ configure 1.6.7-snap0 +HDF5 C++ configure 1.6.7-snap1 generated by GNU Autoconf 2.61 Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, @@ -1559,7 +1559,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 C++ $as_me 1.6.7-snap0, which was +It was created by HDF5 C++ $as_me 1.6.7-snap1, which was generated by GNU Autoconf 2.61. Invocation command line was $ $0 $@ @@ -11427,7 +11427,7 @@ exec 6>&1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 C++ $as_me 1.6.7-snap0, which was +This file was extended by HDF5 C++ $as_me 1.6.7-snap1, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -11480,7 +11480,7 @@ Report bugs to <bug-autoconf@gnu.org>." _ACEOF cat >>$CONFIG_STATUS <<_ACEOF ac_cs_version="\\ -HDF5 C++ config.status 1.6.7-snap0 +HDF5 C++ config.status 1.6.7-snap1 configured by $0, generated by GNU Autoconf 2.61, with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\" diff --git a/c++/configure.in b/c++/configure.in index 4dfdddf..2a678a8 100644 --- a/c++/configure.in +++ b/c++/configure.in @@ -28,7 +28,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5 C++], [1.6.7-snap0], [help@hdfgroup.org]) +AC_INIT([HDF5 C++], [1.6.7-snap1], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/H5Library.cpp]) AC_CONFIG_HEADER([src/H5cxx_config.h]) @@ -1,7 +1,7 @@ #! /bin/sh -# From configure.in Id: configure.in 14461 2008-01-28 19:59:31Z epourmal . +# From configure.in Id: configure.in 14482 2008-02-01 04:08:30Z epourmal . # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.61 for HDF5 1.6.7-snap0. +# Generated by GNU Autoconf 2.61 for HDF5 1.6.7-snap1. # # Report bugs to <help@hdfgroup.org>. # @@ -734,8 +734,8 @@ SHELL=${CONFIG_SHELL-/bin/sh} # Identity of this package. PACKAGE_NAME='HDF5' PACKAGE_TARNAME='hdf5' -PACKAGE_VERSION='1.6.7-snap0' -PACKAGE_STRING='HDF5 1.6.7-snap0' +PACKAGE_VERSION='1.6.7-snap1' +PACKAGE_STRING='HDF5 1.6.7-snap1' PACKAGE_BUGREPORT='help@hdfgroup.org' ac_unique_file="src/H5.c" @@ -1401,7 +1401,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 1.6.7-snap0 to adapt to many kinds of systems. +\`configure' configures HDF5 1.6.7-snap1 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1466,7 +1466,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 1.6.7-snap0:";; + short | recursive ) echo "Configuration of HDF5 1.6.7-snap1:";; esac cat <<\_ACEOF @@ -1616,7 +1616,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 configure 1.6.7-snap0 +HDF5 configure 1.6.7-snap1 generated by GNU Autoconf 2.61 Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, @@ -1630,7 +1630,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 $as_me 1.6.7-snap0, which was +It was created by HDF5 $as_me 1.6.7-snap1, which was generated by GNU Autoconf 2.61. Invocation command line was $ $0 $@ @@ -36803,7 +36803,7 @@ exec 6>&1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 $as_me 1.6.7-snap0, which was +This file was extended by HDF5 $as_me 1.6.7-snap1, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -36856,7 +36856,7 @@ Report bugs to <bug-autoconf@gnu.org>." _ACEOF cat >>$CONFIG_STATUS <<_ACEOF ac_cs_version="\\ -HDF5 config.status 1.6.7-snap0 +HDF5 config.status 1.6.7-snap1 configured by $0, generated by GNU Autoconf 2.61, with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\" diff --git a/configure.in b/configure.in index b8801ef..88aba46 100644 --- a/configure.in +++ b/configure.in @@ -25,7 +25,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5], [1.6.7-snap0], [help@hdfgroup.org]) +AC_INIT([HDF5], [1.6.7-snap1], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/H5.c]) AC_CONFIG_HEADER([src/H5config.h]) diff --git a/doc/html/ADGuide/HISTORY.txt b/doc/html/ADGuide/HISTORY.txt index 50d52fe..611c402 100644 --- a/doc/html/ADGuide/HISTORY.txt +++ b/doc/html/ADGuide/HISTORY.txt @@ -4,6 +4,7 @@ This file contains history of the HDF5 libraries releases CONTENTS +21. Release Information for hdf5-1.6.7 20. Release Information for hdf5-1.6.6 19. Release Information for hdf5-1.6.5 18. Release Information for hdf5-1.6.4 @@ -28,6 +29,525 @@ CONTENTS [Search on the string '%%%%' for per-release section breaks.] + +%%%%1.6.7%%%% Release Information for hdf5-1.6.7 (31/January/2008) + + +HDF5 version 1.6.7 released on Thu Jan 31 21:09:10 CST 2008 +================================================================================ + +INTRODUCTION +============ +This document describes the differences between HDF5-1.6.6 and HDF5-1.6.7 +It contains information on the platforms tested and known problems in +HDF5-1.6.7. For more details, check the HISTORY.txt file in the HDF5 source. + +HDF5 documentation can be found in the distributed release source code +in the subdirectory doc/html/ or on the THG (The HDF Group) FTP server: + + ftp://ftp.hdfgroup.org/HDF5/docs/ + +Documentation for the current release in the HDF5 Release 1.6.x series is +also on the HDF web site: + + http://hdfgroup.org/HDF5/doc1.6/ + +For more information, see the HDF5 home page: + + http://hdfgroup.org/products/hdf5/ + +If you have any questions or comments, please see the HDF Support page +for a list of available resources: + + http://hdfgroup.org/services/support.html + + +CONTENTS +======== +- New Features +- Support for New Platforms, Languages and Compilers +- Bug Fixes since HDF5-1.6.6 +- Documentation +- Platforms Tested +- Supported Configuration Features Summary +- Known Problems + + +New Features +============ + Configuration: + ------------------------- + '--enable-stream-vfd' and '--disable-stream-vfd' are no longer valid + configure options because the stream I/O driver has ben removed from + the distribution. + + Source code distribution + ======================== + Library: + -------- + The stream I/O driver is not included with the HDF5 Library in this + release. The source code files hdf5/src/H5FDstream.c and + hdf5/src/H5FDstream.h and the driver ENUM value H5FD_STREAM have been + removed. + + Parallel Library: + ----------------- + None + + Tools: + ------ + None + + F90 API: + -------- + None + + C++ API: + -------- + None + + +Support for New Platforms, Languages and Compilers +================================================== + +No new platorms, languages, or compilers are supported in this release. + + +Bug Fixes since HDF5-1.6.6 Release +================================== + + Library + ------- + - H5Iget_name could not be used with an object identifier returned + by H5Rdereference; the function would not be able to determine + a valid object name. It has been fixed. SLU - 2008/1/30 + - Changed library's behavior for reading files that might have + corrupted object header information from a previous (buggy) + version of the library. By default, the library now rebuilds the + correct object header information instead of issuing an error. + Previous "strict" file format interpretation can be enabled with + the "--enable-strict-format-checks" configure option. + QAK - 2008/01/13 + - Fixed bug in H5Epush() which was clearing the error stack before + pushing new error value. QAK - 2007/08/23 + - Fixed bug in H5Ewalk() which was not passing back the return value + from error stack walking callback. QAK - 2007/08/23 + + + Configuration + ------------- + None + + + Performance + ------------- + None + + + Tools + ----- + None + + + Documentation + ------------- + None + + + F90 API + ------- + None + + + C++ API + ------- + None + + +Documentation +============= + HDF5 documentation can be found in the distributed release source + code in the subdirectory doc/html/ (start with index.html) or on the + THG (The HDF Group) FTP server: + + ftp://ftp.hdfgroup.org/HDF5/docs/ + + Online documentation for the current release in the HDF5 Release 1.6.x + series can be found on the THG web site: + + http://hdfgroup.org/HDF5/doc1.6/ + + A listing of interface changes from release to release can be found + in the document "HDF5 Software Changes from Release to Release": + + http://hdfgroup.org/HDF5/doc1.6/ADGuide/Changes.html + + Since the stream I/O driver is not included in this release, the + functions H5Pset_fapl_stream and H5Pget_fapl_stream and the stream + ENUM value H5FD_STREAM have been removed from the documentation. + + +Platforms Tested +================ + + AIX 5.2 (32/64 bit) xlc 8.0.0.11 + (datastar) xlC 8.0 + xlf 10.01.0000.0002 + + FreeBSD 6.2 (32- and 64-bit) gcc and g++3.4.6 + (duty and liberty) gcc and g++ 4.2.1 + + IRIX64 6.5 MIPSpro cc 7.4.4m + (ucar mop1 64 & n32) F90 MIPSpro 7.4.4m (64 only) + C++ MIPSpro cc 7.4.4m + + Linux 2.4.21-47.ELsmp #1 SMP gcc 3.2.3 + i686 i386 GNU/Linux + (osage) + + Linux 2.6.9-42.0.10.ELsmp #1 gcc (GCC) 3.4.6 + SMP i686 i386 G95 (GCC 4.0.3 (g95 0.91!) April 18 2007) + (kagiso) PGI C, Fortran, C++ 7.0-7 32-bit + Intel(R) C Compiler for 32-bit + applications, Version 9.1 + Intel(R) C++ Compiler for 32-bit + applications, Version 9.1 + Intel(R) Fortran Compiler for 32-bit + applications, Version 9.1 + Absoft 32-bit Fortran 95 10.0.4 + MPICH mpich2-1.0.6p1 compiled with + gcc 4.2.1 and G95 (GCC 4.0.3 (g95 0.91!) + + Linux 2.6.16.46-0.12-debug #1 Intel(R) C++ Version 10.0.025 + SMP ia64 GNU/Linux Intel(R) Fortran Itanium(R) Version 10.0.025 + (ucar hir1) + + Linux 2.6.16.46-0.14-smp #1 Intel(R) C++ for Intel(R) EM64T Ver. 9.1.037 + SMP x86_64 GNU/Linux Intel(R) Fortran Intel(R) EM64T Ver. 9.1.031 + (smirom) PGI C, Fortran, C++ Version 7.0-7 + for 64-bit target on x86-64 + tested for both 32- and 64-bit binaries + + Linux 2.6.5-7.287.3-sn2 #1 Intel(R) C++ Version 9.0 + Altix SMP ia64 Intel(R) Fortran Itanium(R) Version 9.0 + (cobalt) SGI MPI + + SunOS 5.8 32- and 64-bit Sun WorkShop 6 update 2 C 5.3 + (sol) Sun WorkShop 6 update 2 Fortran 95 6.2 + Sun WorkShop 6 update 2 C++ 5.3 + + SunOS 5.10 32- and 64-bit Sun WorkShop 6 update 2 C 5.8 + (linew) Sun WorkShop 6 update 2 Fortran 95 8.2 + Sun WorkShop 6 update 2 C++ 5.8 + Patch 121019-06 + + Xeon Linux 2.4.21-32.0.1.ELsmp-perfctr-lustre + (tungsten) Intel(R) C++ Version 9.0 + Intel(R) Fortran Compiler Version 9.0 + PGI C Version 6.0-5 + PGI C++ Version 6.0-5 + PGI Fortran Version 6.0-5 + gcc (GCC) 3.2.2 (Red Hat Linux 3.2.2-5) + + Xeon Linux 2.6.9-42.0.10.EL_lustre-1.4.10.1smp + (abe) Intel(R) C++ Version 10.0 + Intel(R) Fortran Compiler Version 10.0 + Open MPI 1.2.2 + + IA-64 Linux 2.4.21-309.tg1 #1 SMP + ia64 gcc (GCC) 3.2.2 + (NCSA tg-login) Intel(R) C++ Version 8.1 + Intel(R) Fortran Compiler Version 8.1 + mpich-gm-1.2.6..14-intel-r2 + + Windows XP Visual Studio 6.0 + Visual Studio .NET (with Intel Fortran 9.1) + Visual Studio 2005 (with Intel Fortran 9.1) + cygwin (gcc 3.4.4) + + Windows Vista Visual studio 2005 + MAC OS X Intel Darwin 8.10.1 + i686-apple-darwin8-gcc-4.0.1 (GCC) 4.0.1 + g95 0.91 + + +Supported Configuration Features Summary +======================================== + +Key: y = Tested and supported + n = Not supported or not tested in this release + C = Cluster + W = Workstation + ( ) = Footnote appears below second table + +Platform C F90 F90 C++ zlib SZIP + parallel parallel +Solaris2.8 32-bit n y n y n y +Solaris2.8 64-bit n y n n y y +Solaris2.10 32-bit n y n y y y +Solaris2.10 64-bit n y n n y y +IRIX64_6.5 32-bit n n n n y y +IRIX64_6.5 64-bit n y n n y y +WinXP Visual Studio 6.0 n n n y y y +WinXP CYGWIN n n n y y y +WinXP 2005 n y n y y y +WinXP .Net n y n y y y +WinVista 2005 n n n y y y +Mac OS X 10.4.10 n y n y y y +AIX-5.2 & 5.3 32- and 64-bit y y y y y y +FreeBSD 6.2 32- and 64-bit n n n y y y +RedHat Linux 2.4.21 W n n n n y n +RedHat Linux 2.6.9-42 i686 GNU (1) W y y y y y y +RedHat Linux 2.6.9-42 i686 Intel W n y n y y n +RedHat Linux 2.6.9-42 i686 PGI W n y n y y n +SuSE Linux 2.6.16 x86_64 GNU (1) W y y n y y y +SuSE Linux 2.6.16 x86_64 Intel W n y n y y n +SuSE Linux 2.6.16 x86_64 PGI W n y n y y n +RHEL 4 Linux 2.6.9 Xeon Lustre C n y n y y y +RedHat Linux 2.4 Xeon Lustre C n y n y y n +SuSE Linux 2.4 ia64 C y y y y y y +SuSe Linux 2.6.5 SGI Altix ia64 n y n y y y + + +Platform Shared static- Thread- + libraries(4) exec safe +Solaris2.8 32- and 64-bit y n y +Solaris2.10 32- and 64-bit y n y +IRIX64_6.5 32-bit y n y +IRIX64_6.5 64-bit y n y +WinXP Visual Studio 6.0 y n n +WinXP CYGWIN y n n +WinXP 2005 y n n +WinXP .Net y n n +WinVista 2005 y n n +Mac OS X 10.4.10 y n n +AIX-5.2 & 5.3 32- and 64-bit n n n +FreeBSD 6.2 32- and 64-bit y n n +RedHat Linux 2.4.21 W y n n +SuSE Linux 2.6.9-42 i686 GNU (1) W y n y +SuSE Linux 2.6.9-42 i686 Intel W y n n +SuSE Linux 2.6.9-42 i686 PGI W n n n +SuSE Linux 2.6.16 x86_64 GNU (1) W y n y +SuSE Linux 2.6.16 x86_64 Intel W y n n +SuSE Linux 2.6.16 x86_64 PGI W n n n +RHEL 4 Linux 2.6.9 Xeon Lustre C y n n +RedHat Linux 2.4 Xeon Lustre C y n n +SuSE Linux 2.4 ia64 C y n n +SuSe Linux 2.6.5 SGI Altix ia64 n n n + +Compiler versions for each platform are listed in the "Platforms Tested" +table found elsewhere in this file (RELEASE.txt). Unless otherwise noted, +compilers used are the system compilers. + +Footnotes: +(1) Fortran compiled with g95. + + +Known Problems +============== +* We discovered two problems when running collective IO parallel HDF5 tests + with chunking storage with the ChaMPIon MPI compiler on tungsten, a Linux + cluster at NCSA. + Under some complex selection cases, + 1) MPI_Get_element returns the wrong value. + 2) MPI_Type_struct also generates the wrong derived datatype and corrupt + data may be generated. + This only happens when turning on collective IO with chunking storage + with some complex selections. We haven't found these problems on other + MPI-IO compilers. If you encounter these problems, you may use Independent + IO instead. + + To avoid this problem, change the following line in your code: + H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE); + + to + H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_INDEPENDENT); + + KY - 2007/08/24 + +* QSC (an HP alpha-based OSF1 cluster) does not create h5pfc correctly. It + does not include the -lmpi properly. This will be fixed in the next + release. AKC - 2007/08/07. + +* On IRIX64 6.5 (UCAR SGI mop1), when testing HDF5 tools with an HDF5 shared + library, especially for h5repacktst and h52gifgentst, the following (or a + similar) error message may appear: + "523648:lt-h5repacktst: rld: Fatal Error: Cannot Successfully map soname + 'libh5test.so.1' under any of the filenames .......(bunch of directories) + " + And the testing will fail. + + We believe this is a libtool problem. One way to get rid of this is to + add the paths of libh5test.so.1 and libh5.so.1 to the shared library path. + + For 32-bit: + You may do this, under csh: + setenv LD_LIBRARYN32_PATH .......(existing paths):[full path of HDF5 + directory/test/.libs]:[full path of HDF5 directory/src/.libs] + + For 64-bit: + setenv LD_LIBRARY64_PATH ......(existing paths):[full path of HDF5 + directory/test/.libs]:[full path of HDF5 directory/src/.libs] + + NOTE: This problem ONLY affects the testing of the HDF5 library when you + build from source. It won't affect any applications that would like to link + with the HDF5 shared library since the shared library path needs to be set + anyway. KY - 2007/8/2 + +* QSC (an HP alpha-based OSF1 cluster) failed the testpar/testphdf5 sub-test + "calloc". All other tests passed. This indicates that a dataset using + chunked storage created by serial HDF5 may not work properly with parallel + HDF5. The calloc test can be skipped by running "prun ... testphdf5 -x + calloc". AKC - 2007/7/12. + +* The Intel C Compiler for the Linux x86_64 platform (EM64T-based, v8.1) has + an optimization error in the datatypes conversion code. Before running + configure, edit the file config/intel-flags by changing the setting of + PROD_CFLAGS from -O3 to -O0. Then run configure. AKC - 2005/11/10. + +* When testing parallel HDF5 with the C compiler version MIPSpro 7.4.3 on IRIX + 6.5, set the environment variable MPI_TYPE_MAX to be a bigger number, for + example 120000, in order to pass the complicated collective IO tests inside + the parallel HDF5 library. This is not a problem inside the parallel HDF5 + library. You can always set a bigger number on your system. KY - 2005/10/6 + +* A contiguous or chunked dataset created by a sequential version of HDF5 + might not be able to be modified with a parallel version of the library. + Use the H5Pset_alloc_time function with H5D_ALLOC_TIME_EARLY to set up the + dataset creation property list to avoid the problem. EIP - 2005/09/09 + +* A dataset created or rewritten with the v1.6.3 library or after can't + be read with the v1.6.2 library or before when Fletcher32 EDC (a filter) is + enabled. There was a bug in the calculating code of the Fletcher32 + checksum in the library before v1.6.3. The checksum value wasn't consistent + between big-endian and little-endian systems. This bug was fixed in + Release 1.6.3. However, after fixing the bug, the checksum value is no + longer the same as before on little-endian system. HDF5 library releases + after 1.6.4 can still read datasets created or rewritten with an HDF5 + library of v1.6.2 or before. SLU - 2005/7/8 + +* For version 6 (6.02 and 6.04) of the Portland Group compiler on AMD Opteron + processor, there's a bug in the compiler for optimization(-O2). The library + failed in several tests, all related to the multi driver. The problem has + been reported to the vendor. + +* test/big fails sometimes with the message "Possible overlap with another + region." The test selects regions randomly, and this error occurs when + two regions overlap each other; it is a bug in the test and not in + HDF5. Since the error is triggered by a random situation, it will + usually disappear if the test is re-run. + +* Newer SGI MIPSpro compilers (version 7.4.x) support C99 features but + have a "guard" statement in stdint.h that will #error and skip the rest + of the header file if the C99 option is not used explicitly. Hardsetting + $CC to c99 will resolve the problem. AKC - 2004/12/13 + +* On IBM AIX systems, parallel HDF5 mode will fail some tests with error + messages like "INFO: 0031-XXX ...". This is from the command poe. + Set the environment variable MP_INFOLEVEL to 0 to minimize the messages + and run the tests again. + + The tests may also fail with messages like "The socket name is already + in use". HDF5 does not use sockets. This is due to problems of the + poe command trying to set up the debug socket. Check whether there are + many old /tmp/s.pedb.* files staying around. These are sockets used by + the poe command and left behind due to failed commands. Ask your system + administrator to clean them out. Lastly, request IBM to provide a means + to run poe without the debug socket. + +* The h5dump tests may fail to match the expected output on some platforms + (e.g. parallel jobs, Windows) where the error messages directed to + "stderr" do not appear in the "right order" with output from stdout. + This is not an error. + +* The --enable-static-exec configure flag fails to compile for Solaris + platforms. This is due to the fact that not all of the system + libraries on Solaris are available in a static format. + + The --enable-static-exec configure flag also fails to correctly compile + on the IBM SP2 platform for the serial mode. The parallel mode works fine + with this option. + + The --enable-static-exec configure flag also fails to correctly compile + on the HPUX 11.00. + + It is suggested that you don't use this option on these platforms + during configuration. + +* Use the --disable-shared configure flag if building with an Absoft Fortran + compiler. + +* Information about building with PGI and Intel compilers is available in + INSTALL file sections 5.7 and 5.8. + +* In LANL QSC, the new cc compiler has problems converting small values of + long long (absolute values less than 1**-308) to double. This triggers + the test/dtypes to report failure in the following test: + Testing random sw long double -> double conversions + If -ieee is used, the converted doubles spread over the range 0.0 to + 10**-308. If -ieee is not used, the converted double values are mostly + 0.0, but occasionally appear as 10**-308. This has been reported to the + system staff. + + All other tests have passed. + +* On at least one system, SDSC DataStar, the scheduler (in this case + LoadLeveler) sends job status updates to standard error when you run + any executable that was compiled with the parallel compilers. + + This causes problems when running "make check" on parallel builds, as + many of the tool tests function by saving the output from test runs, + and comparing it to an exemplar. + + The best solution is to reconfigure the target system so it no longer + inserts the extra text. However, this may not be practical. + + In such cases, one solution is to "setenv HDF5_Make_Ignore yes" prior to + the configure and build. This will cause "make check" to continue after + detecting errors in the tool tests. However, in the case of SDSC DataStar, + it also leaves you with some 150 "failed" tests to examine by hand. + + A second solution is to write a script to run serial tests and filter + out the text added by the scheduler. A sample script used on SDSC + DataStar is given below, but you will probably have to customize it + for your installation. + + Observe that the basic idea is to insert the script as the first item + on the command line which executes the test. The script then + executes the test and filters out the offending text before passing + it on. + + #!/bin/csh + + set STDOUT_FILE=~/bin/serial_filter.stdout + set STDERR_FILE=~/bin/serial_filter.stderr + + rm -f $STDOUT_FILE $STDERR_FILE + + ($* > $STDOUT_FILE) >& $STDERR_FILE + + set RETURN_VALUE=$status + + cat $STDOUT_FILE + + tail +3 $STDERR_FILE + + exit $RETURN_VALUE + + You get the HDF5 make files and test scripts to execute your filter script + by setting the environment variable "RUNSERIAL" to the full path of the + script prior to running configure for parallel builds. Remember to + "unsetenv RUNSERIAL" before running configure for a serial build. + + Note that the RUNSERIAL environment variable exists so that we can + prefix serial runs as necessary on the target system. On DataStar, + no prefix is necessary. However, on an MPICH system, the prefix might + have to be set to something like "/usr/local/mpi/bin/mpirun -np 1" to + get the serial tests to run at all. + + In such cases, you will have to include the regular prefix in your + filter script. JM - 2004/9/15 + %%%%1.6.6%%%% Release Information for hdf5-1.6.6 (16/August/07) diff --git a/doc/html/ADGuide/RELEASE.txt b/doc/html/ADGuide/RELEASE.txt index fd0f6b3..aca4b1d 100644 --- a/doc/html/ADGuide/RELEASE.txt +++ b/doc/html/ADGuide/RELEASE.txt @@ -1,11 +1,12 @@ -HDF5 version 1.6.7 released on Thu Jan 31 21:09:10 CST 2008 +HDF5 version 1.6.7-snap0 released on Thu Mar 20 19:14:11 CDT 2008 ================================================================================ INTRODUCTION ============ -This document describes the differences between HDF5-1.6.6 and HDF5-1.6.7 +This document describes the differences between HDF5-1.6.7 and +HDF5-1.6.7-snap*. It contains information on the platforms tested and known problems in -HDF5-1.6.7. For more details, check the HISTORY.txt file in the HDF5 source. +HDF5-1.6.7-snap*. For more details, check the HISTORY.txt file in the HDF5 source. HDF5 documentation can be found in the distributed release source code in the subdirectory doc/html/ or on the THG (The HDF Group) FTP server: @@ -31,7 +32,7 @@ CONTENTS ======== - New Features - Support for New Platforms, Languages and Compilers -- Bug Fixes since HDF5-1.6.6 +- Bug Fixes since HDF5-1.6.7 - Documentation - Platforms Tested - Supported Configuration Features Summary @@ -42,18 +43,17 @@ New Features ============ Configuration: ------------------------- - '--enable-stream-vfd' and '--disable-stream-vfd' are no longer valid - configure options because the stream I/O driver has ben removed from - the distribution. + - Added no-repeat test feature from v1.8 to this branch. What it does + is that if a test has passed in previous "make check", it will not + run again unless its executable has changed. This can be overridden + by "make check-clean" which removes all check-success markers and + let all tests run again. AKC - 2008/2/22. Source code distribution ======================== Library: -------- - The stream I/O driver is not included with the HDF5 Library in this - release. The source code files hdf5/src/H5FDstream.c and - hdf5/src/H5FDstream.h and the driver ENUM value H5FD_STREAM have been - removed. + None Parallel Library: ----------------- @@ -61,7 +61,13 @@ New Features Tools: ------ - None + - h5repack and h5diff changed command line parameter syntax to be + similar to h5dump, adding also long switch names. PVN - 2008/2/13 + - h5repack now supports adding multiple filters to all objects. + PVN - 2008/2/13 + - h5import imports string (text) data. PVN - 2008/2/19 + + F90 API: -------- @@ -75,29 +81,13 @@ New Features Support for New Platforms, Languages and Compilers ================================================== -No new platorms, languages, or compilers are supported in this release. - -Bug Fixes since HDF5-1.6.6 Release +Bug Fixes since HDF5-1.6.7 Release ================================== Library ------- - - H5Iget_name could not be used with an object identifier returned - by H5Rdereference; the function would not be able to determine - a valid object name. It has been fixed. SLU - 2008/1/30 - - Changed library's behavior for reading files that might have - corrupted object header information from a previous (buggy) - version of the library. By default, the library now rebuilds the - correct object header information instead of issuing an error. - Previous "strict" file format interpretation can be enabled with - the "--enable-strict-format-checks" configure option. - QAK - 2008/01/13 - - Fixed bug in H5Epush() which was clearing the error stack before - pushing new error value. QAK - 2007/08/23 - - Fixed bug in H5Ewalk() which was not passing back the return value - from error stack walking callback. QAK - 2007/08/23 - + None Configuration ------------- @@ -111,7 +101,16 @@ Bug Fixes since HDF5-1.6.6 Release Tools ----- - None + - h5import bug on Windows w/binary datasets. fread in windows needs a binary file + to be open with 'rb' instead of 'r' otherwise it terminates execution if an end + of file character is found on the input file. Besides that the binary file + generated needs to be open with 'wb', otherwise an end of line character is + read twice. PVN - 2008/2/19 + - Fixed h5diff regarding the display of NaN (Not a Number) values. PVN 2008/03/04 + - Fixed h5dump regarding the display of array indices and block selections in + subsetting. PVN 2008/03/10 + + Documentation diff --git a/fortran/configure b/fortran/configure index 0d0e25c..412ebe8 100755 --- a/fortran/configure +++ b/fortran/configure @@ -1,7 +1,7 @@ #! /bin/sh -# From fortran/configure.in Id: configure.in 14461 2008-01-28 19:59:31Z epourmal . +# From fortran/configure.in Id: configure.in 14482 2008-02-01 04:08:30Z epourmal . # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.61 for HDF5 Fortran 1.6.7-snap0. +# Generated by GNU Autoconf 2.61 for HDF5 Fortran 1.6.7-snap1. # # Report bugs to <help@hdfgroup.org>. # @@ -734,8 +734,8 @@ SHELL=${CONFIG_SHELL-/bin/sh} # Identity of this package. PACKAGE_NAME='HDF5 Fortran' PACKAGE_TARNAME='hdf5-fortran' -PACKAGE_VERSION='1.6.7-snap0' -PACKAGE_STRING='HDF5 Fortran 1.6.7-snap0' +PACKAGE_VERSION='1.6.7-snap1' +PACKAGE_STRING='HDF5 Fortran 1.6.7-snap1' PACKAGE_BUGREPORT='help@hdfgroup.org' ac_unique_file="src/HDF5.f90" @@ -1395,7 +1395,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 Fortran 1.6.7-snap0 to adapt to many kinds of systems. +\`configure' configures HDF5 Fortran 1.6.7-snap1 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1460,7 +1460,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 Fortran 1.6.7-snap0:";; + short | recursive ) echo "Configuration of HDF5 Fortran 1.6.7-snap1:";; esac cat <<\_ACEOF @@ -1568,7 +1568,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 Fortran configure 1.6.7-snap0 +HDF5 Fortran configure 1.6.7-snap1 generated by GNU Autoconf 2.61 Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, @@ -1582,7 +1582,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 Fortran $as_me 1.6.7-snap0, which was +It was created by HDF5 Fortran $as_me 1.6.7-snap1, which was generated by GNU Autoconf 2.61. Invocation command line was $ $0 $@ @@ -12513,7 +12513,7 @@ exec 6>&1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 Fortran $as_me 1.6.7-snap0, which was +This file was extended by HDF5 Fortran $as_me 1.6.7-snap1, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -12566,7 +12566,7 @@ Report bugs to <bug-autoconf@gnu.org>." _ACEOF cat >>$CONFIG_STATUS <<_ACEOF ac_cs_version="\\ -HDF5 Fortran config.status 1.6.7-snap0 +HDF5 Fortran config.status 1.6.7-snap1 configured by $0, generated by GNU Autoconf 2.61, with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\" diff --git a/fortran/configure.in b/fortran/configure.in index c498e6c..81b10e7 100644 --- a/fortran/configure.in +++ b/fortran/configure.in @@ -25,7 +25,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5 Fortran], [1.6.7-snap0], [help@hdfgroup.org]) +AC_INIT([HDF5 Fortran], [1.6.7-snap1], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/HDF5.f90]) AC_CONFIG_HEADER([src/H5config_fortran.h]) diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index 78478cb..e37528e 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -1,4 +1,4 @@ -HDF5 version 1.6.7-snap0 currently under development +HDF5 version 1.6.7-snap1 currently under development ================================================================================ INTRODUCTION diff --git a/src/H5public.h b/src/H5public.h index d068ed2..4090cb3 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -76,9 +76,9 @@ extern "C" { #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 6 /* For minor interface/format changes */ #define H5_VERS_RELEASE 7 /* For tweaks, bug-fixes, or development */ -#define H5_VERS_SUBRELEASE "snap0" /* For pre-releases like snap0 */ +#define H5_VERS_SUBRELEASE "snap1" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.6.7-snap0" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.6.7-snap1" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) |