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-rw-r--r--MANIFEST2
-rw-r--r--fortran/testpar/Makefile.am2
-rw-r--r--fortran/testpar/Makefile.in5
-rw-r--r--fortran/testpar/hyper.f902
-rw-r--r--fortran/testpar/mdset.f90320
-rw-r--r--fortran/testpar/ptest.f9011
6 files changed, 337 insertions, 5 deletions
diff --git a/MANIFEST b/MANIFEST
index c344b93..9af697f 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -627,7 +627,7 @@
./fortran/testpar/Makefile.in
./fortran/testpar/ptest.f90
./fortran/testpar/hyper.f90
-
+./fortran/testpar/mdset.f90
#------------------------------------------------------------------------------
#
diff --git a/fortran/testpar/Makefile.am b/fortran/testpar/Makefile.am
index 7a6b141..eec6005 100644
--- a/fortran/testpar/Makefile.am
+++ b/fortran/testpar/Makefile.am
@@ -34,7 +34,7 @@ MOSTLYCLEAN=ParaEg[123].h5f
DISTCLEAN=go
# Test source files
-parallel_test_SOURCES=ptest.f90 hyper.f90
+parallel_test_SOURCES=ptest.f90 hyper.f90 mdset.f90
# The tests depend on several libraries.
LDADD=$(LIBH5FTEST) $(LIBH5TEST) $(LIBH5F) $(LIBHDF5)
diff --git a/fortran/testpar/Makefile.in b/fortran/testpar/Makefile.in
index 173fc3b..19ec8f6 100644
--- a/fortran/testpar/Makefile.in
+++ b/fortran/testpar/Makefile.in
@@ -66,7 +66,8 @@ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/src/H5config.h
CONFIG_CLEAN_FILES =
am__EXEEXT_1 = parallel_test$(EXEEXT)
-am_parallel_test_OBJECTS = ptest.$(OBJEXT) hyper.$(OBJEXT)
+am_parallel_test_OBJECTS = ptest.$(OBJEXT) hyper.$(OBJEXT) \
+ mdset.$(OBJEXT)
parallel_test_OBJECTS = $(am_parallel_test_OBJECTS)
parallel_test_LDADD = $(LDADD)
am__DEPENDENCIES_1 = \
@@ -309,7 +310,7 @@ MOSTLYCLEAN = ParaEg[123].h5f
DISTCLEAN = go
# Test source files
-parallel_test_SOURCES = ptest.f90 hyper.f90
+parallel_test_SOURCES = ptest.f90 hyper.f90 mdset.f90
# The tests depend on several libraries.
LDADD = $(LIBH5FTEST) $(LIBH5TEST) $(LIBH5F) $(LIBHDF5)
diff --git a/fortran/testpar/hyper.f90 b/fortran/testpar/hyper.f90
index d4e069d..a94a5c7 100644
--- a/fortran/testpar/hyper.f90
+++ b/fortran/testpar/hyper.f90
@@ -110,7 +110,7 @@ endif
! create the file collectively
!//////////////////////////////////////////////////////////
-call h5_fixname_f("parf", filename, fapl_id, hdferror)
+call h5_fixname_f("parf1", filename, fapl_id, hdferror)
call h5fcreate_f(filename, H5F_ACC_TRUNC_F, file_id, hdferror, access_prp = fapl_id)
call check("h5fcreate_f", hdferror, nerrors)
diff --git a/fortran/testpar/mdset.f90 b/fortran/testpar/mdset.f90
new file mode 100644
index 0000000..2bce99d
--- /dev/null
+++ b/fortran/testpar/mdset.f90
@@ -0,0 +1,320 @@
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+! Copyright by the Board of Trustees of the University of Illinois. *
+! All rights reserved. *
+! *
+! This file is part of HDF5. The full HDF5 copyright notice, including *
+! terms governing use, modification, and redistribution, is contained in *
+! the files COPYING and Copyright.html. COPYING can be found at the root *
+! of the source code distribution tree; Copyright.html can be found at the *
+! root level of an installed copy of the electronic HDF5 document set and *
+! is linked from the top-level documents page. It can also be found at *
+! http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+! access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+
+
+!//////////////////////////////////////////////////////////
+! writes/reads dataset by hyperslabs
+!//////////////////////////////////////////////////////////
+
+subroutine multiple_dset_write(lenght,do_collective,do_chunk,nerrors)
+use hdf5
+implicit none
+include 'mpif.h'
+
+integer, intent(in) :: lenght ! array lenght
+logical, intent(in) :: do_collective ! use collective I/O
+logical, intent(in) :: do_chunk ! use chunking
+integer, intent(inout) :: nerrors ! number of errors
+integer :: mpierror ! MPI hdferror flag
+integer :: hdferror ! HDF hdferror flag
+integer :: mpi_size ! number of processes in the group of communicator
+integer :: mpi_rank ! rank of the calling process in the communicator
+integer(hsize_t), dimension(1) :: dims ! dataset dimensions
+integer(hsize_t), dimension(1) :: cdims ! chunk dimensions
+integer, allocatable :: wbuf(:) ! write buffer
+integer, allocatable :: rbuf(:) ! read buffer
+integer(hsize_t), dimension(1) :: counti ! hyperslab selection
+integer(hsize_t), dimension(1) :: start ! hyperslab selection
+integer(hid_t) :: fapl_id ! file access identifier
+integer(hid_t) :: dxpl_id ! dataset transfer property list
+integer(hid_t) :: dcpl_id ! dataset creation property list
+integer(hid_t) :: file_id ! file identifier
+integer(hid_t) :: dset_id ! dataset identifier
+integer(hid_t) :: fspace_id ! file space identifier
+integer(hid_t) :: mspace_id ! memory space identifier
+integer(hid_t) :: driver_id ! low-level file driver identifier
+integer :: istart ! start position in array
+integer :: iend ! end position in array
+integer :: icount ! number of elements in array
+character(len=80) :: filename ! filename
+character(len=80) :: dsetname ! dataset name
+integer :: n, i
+
+call mpi_comm_rank( MPI_COMM_WORLD, mpi_rank, mpierror )
+call mpi_comm_size( MPI_COMM_WORLD, mpi_size, mpierror )
+
+!//////////////////////////////////////////////////////////
+! initialize the array data between the processes (3)
+! for the 12 size array we get
+! p0 = 1,2,3,4
+! p1 = 5,6,7,8
+! p2 = 9,10,11,12
+!//////////////////////////////////////////////////////////
+
+allocate(wbuf(0:lenght-1),stat=hdferror)
+if (hdferror /= 0) then
+ write(*,*) 'allocate error'
+ return
+endif
+
+allocate(rbuf(0:lenght-1),stat=hdferror)
+if (hdferror /= 0) then
+ write(*,*) 'allocate error'
+ return
+endif
+
+icount = lenght/mpi_size ! divide the array by the number of processes
+istart = mpi_rank*icount ! start position
+iend = istart + icount ! end position
+
+!//////////////////////////////////////////////////////////
+! HDF5 I/O
+!//////////////////////////////////////////////////////////
+
+dims(1) = lenght
+cdims(1) = lenght/mpi_size ! define chunks as the number of processes
+
+!//////////////////////////////////////////////////////////
+! setup file access property list with parallel I/O access
+!//////////////////////////////////////////////////////////
+
+call h5pcreate_f(H5P_FILE_ACCESS_F, fapl_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+call h5pset_fapl_mpio_f(fapl_id, MPI_COMM_WORLD, MPI_INFO_NULL, hdferror)
+call check("h5pset_fapl_mpio_f", hdferror, nerrors)
+
+call h5pget_driver_f(fapl_id, driver_id, hdferror)
+call check("h5pget_driver_f", hdferror, nerrors)
+
+if( driver_id /= H5FD_MPIO_F) then
+ write(*,*) "Wrong driver information returned"
+ nerrors = nerrors + 1
+endif
+
+!//////////////////////////////////////////////////////////
+! create the file collectively
+!//////////////////////////////////////////////////////////
+
+call h5_fixname_f("parf2", filename, fapl_id, hdferror)
+
+call h5fcreate_f(filename, H5F_ACC_TRUNC_F, file_id, hdferror, access_prp = fapl_id)
+call check("h5fcreate_f", hdferror, nerrors)
+
+call h5screate_simple_f(1, dims, fspace_id, hdferror)
+call check("h5screate_simple_f", hdferror, nerrors)
+
+call h5screate_simple_f(1, dims, mspace_id, hdferror)
+call check("h5screate_simple_f", hdferror, nerrors)
+
+!//////////////////////////////////////////////////////////
+! modify dataset creation properties to enable chunking
+!//////////////////////////////////////////////////////////
+
+call h5pcreate_f(H5P_DATASET_CREATE_F, dcpl_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+if (do_chunk) then
+ call h5pset_chunk_f(dcpl_id, 1, cdims, hdferror)
+ call check("h5pset_chunk_f", hdferror, nerrors)
+endif
+
+!//////////////////////////////////////////////////////////
+! create a property list for collective dataset write
+!//////////////////////////////////////////////////////////
+
+call h5pcreate_f(H5P_DATASET_XFER_F, dxpl_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+if (do_collective) then
+ call h5pset_dxpl_mpio_f(dxpl_id, H5FD_MPIO_COLLECTIVE_F, hdferror)
+ call check("h5pset_dxpl_mpio_f", hdferror, nerrors)
+endif
+
+!//////////////////////////////////////////////////////////
+! define hyperslab
+!//////////////////////////////////////////////////////////
+
+counti(1) = icount
+start(1) = istart
+
+!//////////////////////////////////////////////////////////
+! select hyperslab in memory
+!//////////////////////////////////////////////////////////
+
+call h5sselect_hyperslab_f(mspace_id, H5S_SELECT_SET_F, start, counti, hdferror)
+call check("h5sselect_hyperslab_f", hdferror, nerrors)
+
+!//////////////////////////////////////////////////////////
+! select hyperslab in the file
+!//////////////////////////////////////////////////////////
+
+call h5sselect_hyperslab_f(fspace_id, H5S_SELECT_SET_F, start, counti, hdferror)
+call check("h5sselect_hyperslab_f", hdferror, nerrors)
+
+!//////////////////////////////////////////////////////////
+! create and write the datasets
+!//////////////////////////////////////////////////////////
+
+do n = 1, 300
+
+! direct the output of the write statement to unit "dsetname"
+ write(dsetname,*) 'dataset', n
+
+! create this dataset
+ call h5dcreate_f(file_id, dsetname, H5T_NATIVE_INTEGER, fspace_id, dset_id, hdferror, dcpl_id)
+ call check("h5dcreate_f", hdferror, nerrors)
+
+ do i = istart, iend-1
+ wbuf(i) = n + mpi_rank
+ enddo
+
+! write this dataset
+ call h5dwrite_f(dset_id,H5T_NATIVE_INTEGER,wbuf,dims,hdferror,file_space_id=fspace_id,mem_space_id=mspace_id,xfer_prp=dxpl_id)
+ call check("h5dwrite_f", hdferror, nerrors)
+
+! close this dataset
+ call h5dclose_f(dset_id, hdferror)
+ call check("h5dclose_f", hdferror, nerrors)
+
+enddo
+
+!//////////////////////////////////////////////////////////
+! close HDF5 I/O
+!//////////////////////////////////////////////////////////
+
+call h5pclose_f(fapl_id, hdferror)
+call check("h5pclose_f", hdferror, nerrors)
+
+call h5pclose_f(dcpl_id, hdferror)
+call check("h5pclose_f", hdferror, nerrors)
+
+call h5pclose_f(dxpl_id, hdferror)
+call check("h5pclose_f", hdferror, nerrors)
+
+call h5sclose_f(mspace_id, hdferror)
+call check("h5sclose_f", hdferror, nerrors)
+
+call h5sclose_f(fspace_id, hdferror)
+call check("h5sclose_f", hdferror, nerrors)
+
+call h5fclose_f(file_id, hdferror)
+call check("h5fclose_f", hdferror, nerrors)
+
+!//////////////////////////////////////////////////////////
+! reopen file with read access
+!//////////////////////////////////////////////////////////
+
+call h5pcreate_f(H5P_FILE_ACCESS_F, fapl_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+call h5pset_fapl_mpio_f(fapl_id, MPI_COMM_WORLD, MPI_INFO_NULL, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+call h5fopen_f(filename, H5F_ACC_RDWR_F, file_id, hdferror, access_prp = fapl_id)
+call check("h5pcreate_f", hdferror, nerrors)
+
+call h5screate_simple_f(1, dims, fspace_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+call h5screate_simple_f(1, dims, mspace_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+!//////////////////////////////////////////////////////////
+! select hyperslab in memory
+!//////////////////////////////////////////////////////////
+
+call h5sselect_hyperslab_f(mspace_id, H5S_SELECT_SET_F, start, counti, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+!//////////////////////////////////////////////////////////
+! select hyperslab in the file
+!//////////////////////////////////////////////////////////
+
+call h5sselect_hyperslab_f(fspace_id, H5S_SELECT_SET_F, start, counti, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+!//////////////////////////////////////////////////////////
+! create a property list for collective dataset read
+!//////////////////////////////////////////////////////////
+
+call h5pcreate_f(H5P_DATASET_XFER_F, dxpl_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+if (do_collective) then
+ call h5pset_dxpl_mpio_f(dxpl_id, H5FD_MPIO_COLLECTIVE_F, hdferror)
+ call check("h5pcreate_f", hdferror, nerrors)
+endif
+
+!//////////////////////////////////////////////////////////
+! read dataset
+!//////////////////////////////////////////////////////////
+
+do n = 1, 300
+
+! direct the output of the write statement to unit "dsetname"
+ write(dsetname,*) 'dataset', n
+
+! create this dataset
+ call h5dopen_f(file_id, dsetname, dset_id, hdferror)
+ call check("h5pcreate_f", hdferror, nerrors)
+
+! read this dataset
+ call h5dread_f(dset_id,H5T_NATIVE_INTEGER,rbuf,dims,hdferror,file_space_id=fspace_id,mem_space_id=mspace_id,xfer_prp=dxpl_id)
+ call check("h5pcreate_f", hdferror, nerrors)
+
+! close this dataset
+ call h5dclose_f(dset_id, hdferror)
+ call check("h5dclose_f", hdferror, nerrors)
+
+ do i = istart, iend-1
+ wbuf(i) = n + mpi_rank
+ enddo
+
+! compare read and write data. each process compares a subset of the array
+ do i = istart, iend-1
+ if( wbuf(i) /= rbuf(i)) then
+ write(*,*) 'buffers differs at ', i, rbuf(i), wbuf(i)
+ nerrors = nerrors + 1
+ endif
+ enddo
+
+enddo
+
+
+!//////////////////////////////////////////////////////////
+! close HDF5 I/O
+!//////////////////////////////////////////////////////////
+
+call h5pclose_f(fapl_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+call h5pclose_f(dxpl_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+call h5sclose_f(fspace_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+call h5sclose_f(mspace_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+call h5fclose_f(file_id, hdferror)
+call check("h5pcreate_f", hdferror, nerrors)
+
+
+deallocate(wbuf)
+deallocate(rbuf)
+
+end subroutine multiple_dset_write
+
diff --git a/fortran/testpar/ptest.f90 b/fortran/testpar/ptest.f90
index 21948795..e844256 100644
--- a/fortran/testpar/ptest.f90
+++ b/fortran/testpar/ptest.f90
@@ -83,6 +83,17 @@ do_chunk = .true.
call hyper(lenght,do_collective,do_chunk,nerrors)
!//////////////////////////////////////////////////////////
+! test write/read several datasets (independent MPI I/O)
+!//////////////////////////////////////////////////////////
+
+if (mpi_rank == 0) write(*,*) 'Writing/reading several datasets (contiguous layout, independent MPI I/O)'
+
+do_collective = .false.
+do_chunk = .false.
+call multiple_dset_write(lenght,do_collective,do_chunk,nerrors)
+
+
+!//////////////////////////////////////////////////////////
! close HDF5 interface
!//////////////////////////////////////////////////////////