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-rw-r--r--CMakeLists.txt9
-rwxr-xr-xbin/snapshot552
-rwxr-xr-xconfig/cmake/scripts/CTestScript.cmake83
-rwxr-xr-xconfig/cmake/scripts/HDF5config.cmake101
-rwxr-xr-xconfig/cmake/scripts/HDF5options.cmake33
-rw-r--r--config/cmake_ext_mod/FindMPI.cmake22
-rw-r--r--config/cmake_ext_mod/runTest.cmake28
-rw-r--r--fortran/testpar/CMakeLists.txt4
-rw-r--r--test/cache_image.c7
-rw-r--r--tools/test/h5diff/CMakeTests.cmake13
10 files changed, 609 insertions, 243 deletions
diff --git a/CMakeLists.txt b/CMakeLists.txt
index f4b5e09..9016f29 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -877,6 +877,15 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for
endif ()
endif ()
+ # Parallel IO usage requires MPI to be Linked and Included
+ if (H5_HAVE_PARALLEL)
+ set (LINK_Fortran_LIBS ${LINK_LIBS} ${MPI_Fortran_LIBRARIES})
+ set (LINK_Fortran_SHARED_LIBS ${LINK_SHARED_LIBS} ${MPI_Fortran_LIBRARIES})
+ if (MPI_Fortran_LINK_FLAGS)
+ set (CMAKE_Fortran_EXE_LINKER_FLAGS "${MPI_Fortran_LINK_FLAGS} ${CMAKE_EXE_LINKER_FLAGS}")
+ endif ()
+ endif ()
+
# -----------------------------------------------------------------------
# wrapper script variables
#
diff --git a/bin/snapshot b/bin/snapshot
index a496edd..cc4bbc9 100755
--- a/bin/snapshot
+++ b/bin/snapshot
@@ -13,13 +13,14 @@
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
-# This script should be run nightly from cron. It checks out hdf5
+# This script should be run nightly from cron. It checks out the source
# from the source repository and compares it against the previous
# snapshot. If anything significant changed then a new snapshot is
# created, the minor version number is incremented, and the change is
# checked back into the source repository.
#
+
# function definitions
TIMESTAMP()
{
@@ -28,7 +29,7 @@ TIMESTAMP()
EXIT_BANNER()
{
-TIMESTAMP "Exit $PROGNAME with status=$?"
+ TIMESTAMP "Exit $PROGNAME with status=$?"
}
# Show current total disk usage.
@@ -38,11 +39,178 @@ DISKUSAGE()
( read x y; echo "Disk Usage=$x KB" )
}
+# function provided for testing software downloaded as tar files. A version of
+# this function that properly extracts the downloaded files can be provided in
+# the snapshots-${sw}-overrides file.
+EXTRACT()
+{
+ echo "Error: ${SWVERSION} is in source repository - does not need extraction."
+}
+
+# Standard procedure for checking out or updating source code from an hdfgroup
+# git repository. Override the function for other repositories or procedures.
+SOURCE_CHECKOUT()
+{
+ if test -n $GIT_URL; then
+ if [ -n "$AUTOGEN" ]; then
+ echo "Creating fresh clone of $GIT_URL in $BASEDIR/current_src"
+ # Check out the current version from source repository.
+ (cd $BASEDIR; rm -rf current_src
+ if test -z $GIT_BRANCH; then
+ echo "Testing empty branch $GIT_BRANCH."
+ git clone $GIT_URL current_src
+ else
+ echo "Testing branch $GIT_BRANCH."
+ git clone $GIT_URL -b $GIT_BRANCH current_src
+ fi
+ ) || exit 1
+ else
+ echo "Creating fresh clone of $GIT_URL in $BASEDIR/current"
+ # Check out the current version from source repository.
+ (cd $BASEDIR; rm -rf current
+ if test -n $GIT_BRANCH; then
+ git clone $GIT_URL -b $GIT_BRANCH current
+ else
+ git clone $GIT_URL current
+ fi ) || exit 1
+ fi
+ else
+ echo "Warning! Source directory ("current") is not checked out from git."
+ fi
+}
+
+# Standard procedure for running the configure command in a build (test)
+# directory
+RUNCONFIGURE()
+{
+ if [ "${CURRENT}" != "${TESTDIR}" -a "$CPSRC" = "yes" ]; then
+ echo "Copying source files to ${TESTDIR}."
+ cp -pr ${CURRENT}/* ${TESTDIR}
+ cd ${TESTDIR}
+ ./${CONFIGURE}
+ elif [ -n "${AUTOGEN}" ]; then
+ ${CURRENTSRC}/${CONFIGURE}
+ else
+ ${CURRENT}/${CONFIGURE}
+ fi
+}
+
+# Sometimes "make distclean" doesn't adequately remove files from the previous
+# build. If a build (test) directory was used, its contents can be entirely
+# deleted to provide a clean start. If the test is building in the source
+# directory, the contents can't be deleted, so run "make distclean".
+DISTCLEAN()
+{
+ if [ "${srcdir}" = "yes" -a -n "${SRCDIRNAME}" -a -d ${BASEDIR}/TestDir/${SRCDIRNAME} ]; then
+ echo "Remove contents of $SRCDIRNAME.\n"
+ rm -rf ${BASEDIR}/TestDir/${SRCDIRNAME}/*
+ else
+ echo "$MAKE distclean"
+ (cd ${TESTDIR} && ${MAKE} distclean)
+ fi
+}
+
+# Several of the software packages tested do not support make check-install.
+# Those that support it should have a version of this function in their
+# override with the following lines:
+# TIMESTAMP "check-install $1"
+# ${MAKE} check-install $1
+CHECKINSTALL()
+{
+ echo "check-install is not supported for ${SWVERSION}"
+}
+
+# Function for hdf4 and hdf5 to override to check in changes after snapshot.
+# Safety measure to avoid unintended checkins to other repositories.
+COMMITSNAPSHOT()
+{
+ echo "original hdf5 script committed code changes back into git."
+}
+
+DISPLAYUSAGE()
+{
+ set -
+ cat <<EOF
+Usage: $PROGNAME [all] [checkout] [ftp <URL> [diff] [test] [srcdir] [release] [help]
+ [clean] [distclean] [echo] [deploy <dir>] [deploydir <dir>]
+ [zlib <zlib_path>] [releasedir <dir>] [srcdirname <dir>] [check-vfd]
+ [exec <command>] [module-load <module-list>] [op-configure <option>]
+ [--<option>]
+ all: Run all commands (checkout, test & release)
+ [Default is all]
+ checkout: Run source checkout
+ diff: Run diff on current and previous versions. Exit 0 if
+ no significant differences are found. Otherwise, non-zero.
+ deploy: deploy binary to directory <dir>
+ deploydir: use <dir> as the default directory for deployment
+ test: Run test
+ release: Run release
+ clean: Run make clean
+ distclean:Run make distclean
+ echo: Turn on echo mode (set -x)
+ setenv <name> <value>:
+ Set environment variable <name> to <value>.
+ setenvN <N> <name> <value> ...:
+ Set environment variable with <N> values.
+ E.g., setenvN 3 x a b c is same as setenv x="a b c".
+ srcdir: Use srcdir option (does not imply other commands)
+ "snapshot srcdir" is equivalent to "snapshot srcdir all"
+ "snapshot srcdir checkout" is equivalent to "snapshot checkout"
+ srcdirname <dir>:
+ Use <dir> as the srcdir testing directory if srcdir is choosen.
+ If <dir> starts with '-', it is append to the default name
+ E.g., "snapshot srcdir srcdirname -xx" uses hostname-xx
+ [Default is hostname]
+ help: Print this message
+ echo: Turn on shell echo
+ zlib <zlib_path>:
+ Use <zlib_path> as the ZLIB locations
+ [Default is $ZLIB_default]
+ releasedir <dir>:
+ Use <dir> as the release directory
+ [Default is $ReleaseDir_default]
+ check-vfd:
+ Run make check-vfd instead of just make check.
+ exttest <testscript>;
+ Run testscript;
+ exec <command>:
+ Run <command>;
+ module-load <module-list>:
+ Load modules in comma-separated <module-list>;
+ op-configure <option>:
+ Pass <option> to the configure command
+ E.g., "snapshot op-configure --enable-parallel"
+ configures for parallel mode
+ --<option>:
+ Pass --<option> to the configure command
+ E.g., "snapshot --enable-parallel"
+ configures for parallel mode
+EOF
+ exit $errcode
+}
# MAIN
# SGI /bin/sh replaces $0 as function name if used in a function.
# Set the name here to avoid that ambiguity and better style too.
PROGNAME=$0
+SNAPSHOTNAME=
+HDFREPOS=
+DOCVERSION=""
+MODULELIST=""
+
+if [ -f bin/snapshot_params ]; then
+ . bin/snapshot_params
+ echo "Added snapshot_params."
+fi
+if [ -z "$SWVER" -a -f bin/snapshot_version ]
+then
+ . bin/snapshot_version
+ echo "Added snapshot_version."
+fi
+if [ -n ${HDFREPOS} -a -f bin/snapshot-${HDFREPOS}-overrides ]; then
+ . bin/snapshot-${HDFREPOS}-overrides
+ echo "Added snapshot-${HDFREPOS}-overrides."
+fi
echo "====================================="
echo "$PROGNAME $*"
@@ -51,7 +219,7 @@ TIMESTAMP MAIN
uname -a
# setup exit banner message
-trap EXIT_BANNER 0
+trap EXIT_BANNER 0 1 2 9 15
# Dump environment variables before option parsing
echo ===Dumping environment variables before option parsing ===
@@ -67,8 +235,14 @@ ReleaseDir_default=release_dir
ZLIB_default=
ZLIB=$ZLIB_default
-# What compression methods to use?
-METHODS="gzip zip bzip2 doc"
+# What compression methods to use? (md5 does checksum). Doc was apparently
+# added as a compression method to create a separate tarfile containing the
+# documentation files for v 1.8 and above.
+if [ "${SWVERSION}" = "hdf5_1_6" ]; then
+ METHODS="gzip bzip2 md5"
+else
+ METHODS="gzip bzip2 doc"
+fi
# Use User's MAKE if set. Else use generic make.
MAKE=${MAKE:-make}
@@ -81,15 +255,38 @@ CHECKVAL=check
cmd="all"
test_opt=""
errcode=0
+AUTOGEN=""
+EXTTEST=""
+EXEC_CMD_ARG=""
while [ $# -gt 0 ] ; do
case "$1" in
all)
cmd="all"
;;
+ checkout-autogen)
+ cmdcheckout="checkout"
+ AUTOGEN="autogen"
+ cmd=""
+ ;;
checkout)
cmdcheckout="checkout"
cmd=""
;;
+ ftp)
+ echo "Setting ftp flags in snapshot script"
+ cmdcheckout="checkout"
+ cmdftp="ftp"
+ cmd=""
+ shift
+ if [ $# -lt 1 ]; then
+ echo "URL missing"
+ errcode=1
+ cmd="help"
+ break
+ fi
+ ftp_url="$1"
+ echo "ftp_url is $ftp_url"
+ ;;
diff)
cmddiff="diff"
cmd=""
@@ -164,6 +361,10 @@ while [ $# -gt 0 ] ; do
cmdrel="release"
cmd=""
;;
+ autogen-release)
+ cmdrel="autogen-release"
+ cmd=""
+ ;;
clean | distclean)
cmdclean="$1"
cmd=""
@@ -196,12 +397,43 @@ while [ $# -gt 0 ] ; do
fi
ReleaseDir="$1"
;;
+ exttest)
+ shift
+ if [ $# -lt 1 ]; then
+ echo "exttest script name missing"
+ errcode=1
+ cmd="help"
+ break
+ fi
+ cmd=""
+ EXTTEST="$1"
+ ;;
+ exec)
+ shift
+ if [ $# -lt 1 ]; then
+ echo "exec command name missing"
+ errcode=1
+ cmd="help"
+ break
+ fi
+ cmd=""
+ EXEC_CMD_ARG="$@"
+ # exit the parsing while loop since all arguments have been consummed.
+ break
+ ;;
check-vfd)
CHECKVAL=check-vfd
;;
- yodconfigure)
- YODCONFIGURE=yes
- ;;
+ module-load)
+ shift
+ if [ $# -lt 1 ]; then
+ echo "missing module list to load"
+ errcode=1
+ cmd="help"
+ break
+ fi
+ MODULELIST="$1"
+ ;;
--*)
OP_CONFIGURE="$OP_CONFIGURE $1"
;;
@@ -225,87 +457,39 @@ while [ $# -gt 0 ] ; do
shift
done
+if [ -n "$MODULELIST" ]; then
+ . ~/.bashrc
+ module use /opt/pkgs/modules/all
+ # load module command will take a space separated list of modules.
+ # If we have a comma separated list, convert ',' to ' '.
+ MODULELIST="$( echo -e "$MODULELIST" | tr ',' ' ' )"
+ module load $MODULELIST
+fi
+
# Dump environment variables after option parsing
echo ===Dumping environment variables after option parsing ===
printenv | sort
echo ===Done Dumping environment variables after option parsing ===
if [ "$cmd" = help ]; then
- set -
- cat <<EOF
-Usage: $PROGNAME [all] [checkout] [diff] [test] [srcdir] [release] [help]
- [clean] [distclean] [echo] [deploy <dir>] [deploydir <dir>]
- [zlib <zlib_path>] [releasedir <dir>] [srcdirname <dir>] [check-vfd]
- [op-configure <option>] [--<option>]
- all: Run all commands (checkout, test & release)
- [Default is all]
- checkout: Run source checkout
- diff: Run diff on current and previous versions. Exit 0 if
- no significant differences are found. Otherwise, non-zero.
- deploy: deploy binary to directory <dir>
- deploydir: use <dir> as the default directory for deployment
- test: Run test
- release: Run release
- clean: Run make clean
- distclean:Run make distclean
- echo: Turn on echo mode (set -x)
- setenv <name> <value>:
- Set environment variable <name> to <value>.
- setenvN <N> <name> <value> ...:
- Set environment variable with <N> values.
- E.g., setenvN 3 x a b c is same as setenv x="a b c".
- srcdir: Use srcdir option (does not imply other commands)
- "snapshot srcdir" is equivalent to "snapshot srcdir all"
- "snapshot srcdir checkout" is equivalent to "snapshot checkout"
- srcdirname <dir>:
- Use <dir> as the srcdir testing directory if srcdir is choosen.
- If <dir> starts with '-', it is append to the default name
- E.g., "snapshot srcdir srcdirname -xx" uses hostname-xx
- [Default is hostname]
- help: Print this message
- echo: Turn on shell echo
- zlib <zlib_path>:
- Use <zlib_path> as the ZLIB locations
- [Default is $ZLIB_default]
- releasedir <dir>:
- Use <dir> as the release directory
- [Default is $ReleaseDir_default]
- check-vfd:
- Run make check-vfd instead of just make check.
- op-configure <option>:
- Pass <option> to the configure command
- E.g., "snapshot op-configure --enable-parallel"
- configures for parallel mode
- --<option>:
- Pass --<option> to the configure command
- E.g., "snapshot --enable-parallel"
- configures for parallel mode
-EOF
- exit $errcode
+ DISPLAYUSAGE
fi
# Setup the proper configure option (--with-zlib) to use zlib library
# provide ZLIB is non-empty.
ZLIB=${ZLIB:+"--with-zlib="$ZLIB}
-if [ -n "$YODCONFIGURE" ]; then
- cp configure configure.yod
- bin/yodconfigure configure.yod
- CONFIGURE="./configure.yod"
-else
- CONFIGURE="./configure"
+# Adding --prefix as a configure option will put the path to the deploy
+# directory in the initial libhdf5*.la files
+if [ -n "$DEPLOYDIRNAME" ]; then
+ OP_CONFIGURE="$OP_CONFIGURE --prefix=${deploydir}/${DEPLOYDIRNAME}"
fi
-CONFIGURE="$CONFIGURE $ZLIB $OP_CONFIGURE"
+CONFIGURE="configure $OP_CONFIGURE"
+# echo "Configure command is $CONFIGURE"
# Execute the requests
snapshot=yes
-if [ -f bin/snapshot_version ]; then
- . bin/snapshot_version
-else
- H5VERSION=hdf5
-fi
-
-BASEDIR=${HOME}/snapshots-${H5VERSION}
+BASEDIR=${HOME}/snapshots-${SNAPSHOTNAME}
if [ ! -d ${BASEDIR} ]; then
echo "BASEDIR ($BASEDIR) does not exist"
exit 1
@@ -315,11 +499,6 @@ CURRENT=${BASEDIR}/current
PREVIOUS=${BASEDIR}/previous
ReleaseDir=${ReleaseDir:=${BASEDIR}/${ReleaseDir_default}}
HOSTNAME=`hostname | cut -f1 -d.` # no domain part
-if [ $H5VERSION != hdf5 ]; then
- SVNVERSION="hdf5/branches/$H5VERSION"
-else
- SVNVERSION=hdf5/trunk # use the default (trunk) version
-fi
# Try finding a version of diff that supports the -I option too.
DIFF=diff
@@ -333,19 +512,48 @@ done
#=============================
if [ "$cmd" = "all" -o -n "$cmdcheckout" ]; then
TIMESTAMP "checkout"
- # If there is a Makefile in ${CURRENT}, the last test done in it
- # has not been distclean'ed. They would interfere with other
- # --srcdir build since make considers the files in ${CURRENT}
- # take precedence over files in its own build-directory. Run
- # a "make distclean" to clean them all out. This is not really
- # part of the "checkout" functions but this is the most convenient
- # spot to do the distclean. We will also continue the checkout process
- # regardless of the return code of distclean.
- ( cd ${CURRENT}; test -f Makefile && ${MAKE} distclean)
-
- SVNROOT=http://svn.hdfgroup.uiuc.edu
- # Check out the current version from source repository.
- (cd $BASEDIR; svn -q co ${SVNROOT}/${SVNVERSION} current ) || exit 1
+ # ${BASEDIR}/bin is now updated from git by EveningMaint or DailyMaint
+ # to avoid updating the scripts in ${BASEDIR}/bin while they are running.
+
+ if [ -z "$AUTOGEN" ]; then
+ # If there is a Makefile in ${CURRENT}, the last test done in it
+ # has not been distclean'ed. They would interfere with other
+ # --srcdir build since make considers the files in ${CURRENT}
+ # take precedence over files in its own build-directory. Run
+ # a "make distclean" to clean them all out. This is not really
+ # part of the "checkout" functions but this is the most convenient
+ # spot to do the distclean. We will also continue the checkout process
+ # regardless of the return code of distclean.
+ ( cd ${CURRENT}; test -f Makefile && ${MAKE} distclean)
+ fi
+ # echo "cmdftp is $cmdftp; ftp_url is $ftp_url"
+ if [ -n "$cmdftp" ]; then
+ echo "Get the NetCDF4 source from their ftp server."
+ echo "Command executed is: 2>&1 wget -N $ftp_url"
+ cd ${BASEDIR};
+ WGET_OUTPUT="`2>&1 wget -N $ftp_url`"
+ errcode=$?
+ if [[ $errcode -ne 0 ]]; then
+ exit $errcode
+ fi
+
+ if [ $? -ne 0 ];then
+ echo $0: "$WGET_OUTPUT" Exiting.
+ exit 1
+ fi
+
+ # echo "Wget output was $WGET_OUTPUT"
+
+ if echo "$WGET_OUTPUT" | fgrep 'not retrieving' &> /dev/null
+ then
+ echo "Snapshot unchanged"
+ else
+ echo "New snapshot downloaded"
+ EXTRACT
+ fi
+ else
+ SOURCE_CHECKOUT
+ fi
fi # Do source checkout
@@ -353,7 +561,7 @@ fi # Do source checkout
# Run Test the HDF5 library
#=============================
if [ "$cmd" = "all" -o -n "$cmdtest" -o -n "$cmddiff" ]; then
- TIMESTAMP "diff"
+ TIMESTAMP "Run Tests"
# setup if srcdir is used.
if [ -z "$srcdir" ]; then
TESTDIR=${CURRENT}
@@ -369,10 +577,15 @@ if [ "$cmd" = "all" -o -n "$cmdtest" -o -n "$cmddiff" ]; then
esac
TESTDIR=${BASEDIR}/TestDir/${SRCDIRNAME}
test -d ${TESTDIR} || mkdir ${TESTDIR}
+ # set TESTDIR to use the direct path to the local test directory
+ # rather than the path through ${BASEDIR}.
+ cd ${TESTDIR}
+ TESTDIR=`pwd -P`
+ cd ${CURRENT}
fi
# Make sure current version exists and is clean
if [ -d ${TESTDIR} ]; then
- (cd ${TESTDIR} && ${MAKE} distclean)
+ DISTCLEAN
else
errcode=$?
snapshot=no
@@ -382,12 +595,17 @@ if [ "$cmd" = "all" -o -n "$cmdtest" -o -n "$cmddiff" ]; then
# Compare it with the previous version. Compare only files listed in
# the MANIFEST plus the MANIFEST itself.
if [ -d ${PREVIOUS} ]; then
- if (${DIFF} -c ${PREVIOUS}/MANIFEST ${CURRENT}/MANIFEST); then
+ if [ -z "${AUTOGEN}" ]; then
+ CURRENTSRC=${CURRENT}
+ else
+ CURRENTSRC=${BASEDIR}/current_src
+ fi
+ if (${DIFF} -c ${PREVIOUS}/MANIFEST ${CURRENTSRC}/MANIFEST); then
snapshot=no
- for src in `grep '^\.' ${CURRENT}/MANIFEST|expand|cut -f1 -d' '`; do
+ for src in `grep '^\.' ${CURRENTSRC}/MANIFEST|expand|cut -f1 -d' '`; do
if ${DIFF} -I H5_VERS_RELEASE -I " released on " \
-I " currently under development" \
- ${PREVIOUS}/$src ${CURRENT}/$src
+ ${PREVIOUS}/$src ${CURRENTSRC}/$src
then
: #continue
else
@@ -408,44 +626,123 @@ if [ "$cmd" = "all" -o -n "$cmdtest" -o -n "$cmddiff" ]; then
fi
fi
+ #=============================
+ # Execute command if defined
+ #=============================
+ #echo BEFORE EXEC command
+ #echo EXEC_CMD_ARG=${EXEC_CMD_ARG}
+
+ if [ -n "$EXEC_CMD_ARG" ]; then
+ TIMESTAMP ${EXEC_CMD_ARG}
+ TESTDIR=${BASEDIR}/TestDir/${SRCDIRNAME}
+ test -d ${TESTDIR} || mkdir ${TESTDIR}
+ if cd ${TESTDIR}; then
+ # clean up the directory before executing the command
+ # Do we need to clean first?
+ # rm -rf *
+ #
+ # If EXEC_CMD_ARG starts with a '/', it has an absolute path, else it is
+ # relative to the BASEDIR.
+ case "$EXEC_CMD_ARG" in
+ /*)
+ ${EXEC_CMD_ARG}
+ ;;
+ *)
+ ${BASEDIR}/${EXEC_CMD_ARG}
+ ;;
+ esac
+ errcode=$?
+ else
+ echo "${TESTDIR} not accessible"
+ errcode=1
+ fi
+ # exit snapshot since nothing else to do, for now.
+ exit $errcode
+ fi
+
# Build, run tests and install procedures
- if [ "$snapshot" = "yes" ]; then
+ if [ "$snapshot" = "yes" ] && [ "$NOMAKE" != "yes" ]; then
+ FAIL_SECTION=""
+ if [ -f ${TESTDIR}/failsection ]; then
+ rm ${TESTDIR}/failsection
+ fi
if (cd ${TESTDIR} && \
- TIMESTAMP "configure" && \
- ${srcdir:+${CURRENT}/}${CONFIGURE} && \
- TIMESTAMP "make" && \
+ TIMESTAMP "configure" && echo "configure" > ${TESTDIR}/failsection && \
+ RUNCONFIGURE && \
+ sleep 2 && \
+ TIMESTAMP "make" && echo "make" > ${TESTDIR}/failsection && \
${MAKE} && DISKUSAGE \
- TIMESTAMP ${CHECKVAL} && \
+ TIMESTAMP ${CHECKVAL} && echo "make check" > ${TESTDIR}/failsection && \
${MAKE} ${CHECKVAL} && DISKUSAGE \
- TIMESTAMP "install" && \
- ${MAKE} install-all && DISKUSAGE \
- TIMESTAMP "check-install" && \
- ${MAKE} check-install && DISKUSAGE \
- TIMESTAMP "uninstall" && \
- ${MAKE} uninstall-all && DISKUSAGE); then
+ TIMESTAMP "install" && echo "make install" > ${TESTDIR}/failsection && \
+ ${MAKE} install && DISKUSAGE \
+ TIMESTAMP "check-install" && echo "make check-install" > ${TESTDIR}/failsection && \
+ CHECKINSTALL && DISKUSAGE \
+ TIMESTAMP "uninstall" && echo "make uninstall" > ${TESTDIR}/failsection && \
+ ${MAKE} uninstall && DISKUSAGE); then
:
else
errcode=$?
+ FAIL_SECTION=`cat ${TESTDIR}/failsection`
+ echo "Failed running ${FAIL_SECTION}"
snapshot=no
exit $errcode
fi
+ elif [ $CPSRC ]; then
+ cp -pr ${CURRENT}/* ${TESTDIR}
+ else
+ cmdclean=""
fi
fi # Test the HDF5 library
+# Run external test if configured
#=============================
+#=============================
+#if [ -d "$CURRENT" ]; then
+if [ "$EXTTEST" != "" ]; then
+ TIMESTAMP ${EXTTEST}
+ TESTDIR=${BASEDIR}/TestDir/${SRCDIRNAME}
+ test -d ${TESTDIR} || mkdir ${TESTDIR}
+ cd ${TESTDIR}
+ sleep 1
+ TIMESTAMP $pwd
+ ls
+ ${BASEDIR}/${EXTTEST}
+ errcode=$?
+ exit $errcode
+fi
+
+#=============================
# Run deployment if requested.
#=============================
if [ -n "$DEPLOYDIRNAME" ]; then
+ # The daily tests deploy to .../hdf5/... or .../hdf4/... except on cobalt where the
+ # deploy directory is in .../HDF5/... lc will take care of this. If hdf4 or hdf5
+ # either upper or lower case isn't in the path, RELEASE.txt won't be found unless
+ # it is in $CURRENT.
+ POS4=`perl -e "print index(lc(\"${deploydir}/${DEPLOYDIRNAME}\"), 'hdf4')"`
+ POS5=`perl -e "print index(lc(\"${deploydir}/${DEPLOYDIRNAME}\"), 'hdf5')"`
+ if [ "${POS4}" -ge "0" ]; then
+ RELEASE_TXT_LOC="release_notes"
+ elif [ "${POS5}" -ge "0" ]; then
+ RELEASE_TXT_LOC="release_docs"
+ else
+ RELEASE_TXT_LOC=""
+ fi
+
if [ "$snapshot" = "yes" ]; then
TIMESTAMP "deploy"
if (cd ${TESTDIR} &&
- ${CURRENT}/bin/deploy ${deploydir}/${DEPLOYDIRNAME} && \
+ ${BASEDIR}/bin/deploy ${deploydir}/${DEPLOYDIRNAME} && \
TIMESTAMP "clean" && \
${MAKE} clean && \
TIMESTAMP "check-install prefix=${deploydir}/${DEPLOYDIRNAME}" && \
- ${MAKE} check-install prefix=${deploydir}/${DEPLOYDIRNAME}); then
- : #continue
+ CHECKINSTALL prefix=${deploydir}/${DEPLOYDIRNAME}); then
+ cd ${CURRENT}
+ cp ${RELEASE_TXT_LOC}/RELEASE.txt ${deploydir}/${DEPLOYDIRNAME}
+ cp COPYING ${deploydir}/${DEPLOYDIRNAME}
+ #: #continue
else
errcode=$?
exit $errcode
@@ -460,24 +757,41 @@ fi # Deploy
if [ "$cmd" = "all" -o -n "$cmdrel" ]; then
if [ "$snapshot" = "yes" ]; then
TIMESTAMP "release"
- (cd ${CURRENT} && ${MAKE} distclean)
+ DISTCLEAN
(
# Turn on exit on error in the sub-shell so that it does not
# commit source if errors encounter here.
set -e
- cd ${CURRENT}
- RELEASE_VERSION="`perl bin/h5vers -v`"
- echo "Making snapshot release ($RELEASE_VERSION) to ${ReleaseDir}..."
- bin/release -d $ReleaseDir $METHODS
- perl bin/h5vers -i
- svn -q commit -m "Snapshot $RELEASE_VERSION"
+ if [ "$cmdrel" = "autogen-release" ]; then
+ cd ${BASEDIR}/current_src
+ else
+ cd ${CURRENT}
+ fi
+ if [ "$HDFREPOS" = "hdf4" ]; then
+ RELEASE_VERSION="`perl bin/h4vers -v`"
+ echo "Making snapshot release ($RELEASE_VERSION) to ${ReleaseDir}..."
+ bin/release -d $ReleaseDir $METHODS
+ perl bin/h4vers -i
+ elif [ "$HDFREPOS" = "hdf5" ]; then
+ RELEASE_VERSION="`perl bin/h5vers -v`"
+ echo "Making snapshot release ($RELEASE_VERSION) to ${ReleaseDir}..."
+ if [ "${DOCVERSION}" ]; then
+ bin/release -d $ReleaseDir --docver ${DOCVERSION} $METHODS
+ else
+ bin/release -d $ReleaseDir $METHODS
+ fi
+ perl bin/h5vers -i
+ else
+ echo "need real release steps. For now, only move current version to previous"
+ fi
+ COMMITSNAPSHOT
)
errcode=$?
fi
# Replace the previous version with the current version.
# Should check if the errcode of the release process but there
- # are other failures after release was done (e.g. h5vers or svn failures)
+ # are other failures after release was done (e.g. h5vers or git failures)
# that should allow the replacement to occure.
rm -rf ${PREVIOUS}
mv ${CURRENT} ${PREVIOUS}
@@ -487,7 +801,7 @@ fi #Release snapshot
#=============================
# Clean the test area. Default is no clean.
#=============================
-if [ -n "$cmdclean" ]; then
+if [ -n "$cmdclean" ] && [ "$NOMAKE" != "yes" ]; then
TIMESTAMP "clean"
# setup if srcdir is used.
if [ -z "$srcdir" ]; then
diff --git a/config/cmake/scripts/CTestScript.cmake b/config/cmake/scripts/CTestScript.cmake
index 7657fc2..e525078 100755
--- a/config/cmake/scripts/CTestScript.cmake
+++ b/config/cmake/scripts/CTestScript.cmake
@@ -25,14 +25,11 @@ if(NOT SITE_OS_NAME)
message(STATUS "Dashboard script uname output: ${osname}-${osrel}-${cpu}\n")
set(CTEST_BUILD_NAME "${osname}-${osrel}-${cpu}")
- if(USE_AUTOTOOLS)
- set(CTEST_BUILD_NAME "AT-${CTEST_BUILD_NAME}")
- endif()
if(SITE_BUILDNAME_SUFFIX)
- set(CTEST_BUILD_NAME "${CTEST_BUILD_NAME}-${SITE_BUILDNAME_SUFFIX}")
+ set(CTEST_BUILD_NAME "${SITE_BUILDNAME_SUFFIX}-${CTEST_BUILD_NAME}")
endif()
set(BUILD_OPTIONS "${ADD_BUILD_OPTIONS}")
-else(NOT SITE_OS_NAME)
+else()
## machine name provided
## --------------------------
if(CMAKE_HOST_UNIX)
@@ -44,7 +41,7 @@ else(NOT SITE_OS_NAME)
set(CTEST_BUILD_NAME "${CTEST_BUILD_NAME}-${SITE_BUILDNAME_SUFFIX}")
endif()
set(BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDNAME:STRING=${CTEST_BUILD_NAME}")
-endif(NOT SITE_OS_NAME)
+endif()
#-----------------------------------------------------------------------------
# MAC machines need special option
@@ -59,12 +56,12 @@ if(APPLE)
if(NOT NO_MAC_FORTRAN)
# Shared fortran is not supported, build static
set(BUILD_OPTIONS "${BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_ANSI_CFLAGS:STRING=-fPIC")
- else(NOT NO_MAC_FORTRAN)
+ else()
set(BUILD_OPTIONS "${BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
- endif(NOT NO_MAC_FORTRAN)
+ endif()
set(BUILD_OPTIONS "${BUILD_OPTIONS} -DCTEST_USE_LAUNCHERS:BOOL=ON -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=OFF")
-endif(APPLE)
+endif()
#-----------------------------------------------------------------------------
set(NEED_REPOSITORY_CHECKOUT 0)
@@ -73,10 +70,10 @@ if(CTEST_USE_TAR_SOURCE)
## Uncompress source if tar file provided
## --------------------------
if(WIN32)
- message(STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} x ${CTEST_USE_TAR_SOURCE}.zip]")
+ message(STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} x ${CTEST_DASHBOARD_ROOT}\\${CTEST_USE_TAR_SOURCE}.zip]")
execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}\\${CTEST_USE_TAR_SOURCE}.zip RESULT_VARIABLE rv)
else()
- message(STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_USE_TAR_SOURCE}.tar]")
+ message(STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE}.tar]")
execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE}.tar RESULT_VARIABLE rv)
endif()
@@ -88,7 +85,7 @@ if(CTEST_USE_TAR_SOURCE)
file(RENAME ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE} ${CTEST_SOURCE_DIRECTORY})
set(LOCAL_SKIP_UPDATE "TRUE")
-else(CTEST_USE_TAR_SOURCE)
+else()
if(LOCAL_UPDATE)
if(CTEST_USE_GIT_SOURCE)
find_program(CTEST_GIT_COMMAND NAMES git git.cmd)
@@ -109,7 +106,7 @@ else(CTEST_USE_TAR_SOURCE)
set(CTEST_GIT_options "pull")
endif()
set(CTEST_UPDATE_COMMAND "${CTEST_GIT_COMMAND}")
- else(CTEST_USE_GIT_SOURCE)
+ else()
## --------------------------
## use subversion to get source
#-----------------------------------------------------------------------------
@@ -140,9 +137,9 @@ else(CTEST_USE_TAR_SOURCE)
set(CTEST_SVN_UPDATE_OPTIONS "-r ${CTEST_REPO_VERSION}")
endif()
endif()
- endif(CTEST_USE_GIT_SOURCE)
- endif(LOCAL_UPDATE)
-endif(CTEST_USE_TAR_SOURCE)
+ endif()
+ endif()
+endif()
#-----------------------------------------------------------------------------
## Clear the build directory
@@ -166,22 +163,11 @@ endif()
#-----------------------------------------------------------------------------
# Send the main script as a note.
-if(USE_AUTOTOOLS)
- ## autotools builds need to use make and does not use the cacheinit.cmake file
- ## -- make command
- ## -----------------
- find_program(MAKE NAMES make)
- list(APPEND CTEST_NOTES_FILES
- "${CTEST_SCRIPT_DIRECTORY}/${CTEST_SCRIPT_NAME}"
- "${CMAKE_CURRENT_LIST_FILE}"
- )
-else()
- list(APPEND CTEST_NOTES_FILES
- "${CTEST_SCRIPT_DIRECTORY}/${CTEST_SCRIPT_NAME}"
- "${CMAKE_CURRENT_LIST_FILE}"
- "${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake"
- )
-endif()
+list(APPEND CTEST_NOTES_FILES
+ "${CTEST_SCRIPT_DIRECTORY}/${CTEST_SCRIPT_NAME}"
+ "${CMAKE_CURRENT_LIST_FILE}"
+ "${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake"
+)
#-----------------------------------------------------------------------------
# Check for required variables.
@@ -194,32 +180,25 @@ foreach(req
if(NOT DEFINED ${req})
message(FATAL_ERROR "The containing script must set ${req}")
endif()
-endforeach(req)
+endforeach()
#-----------------------------------------------------------------------------
# Initialize the CTEST commands
#------------------------------
-if(USE_AUTOTOOLS)
- set(CTEST_CONFIGURE_COMMAND "${CTEST_SOURCE_DIRECTORY}/configure ${ADD_BUILD_OPTIONS}")
- set(CTEST_BUILD_COMMAND "${MAKE} ${CTEST_BUILD_FLAGS}")
- configure_file(${CTEST_SOURCE_DIRECTORY}/config/cmake/CTestCustom.cmake ${CTEST_BINARY_DIRECTORY}/CTestCustom.cmake)
- file(WRITE ${CTEST_BINARY_DIRECTORY}/CTestTestfile.cmake "ADD_TEST(makecheck \"${MAKE}\" \"${CTEST_BUILD_FLAGS}\" \"-i\" \"check\")")
-else(USE_AUTOTOOLS)
- if(LOCAL_MEMCHECK_TEST)
- find_program(CTEST_MEMORYCHECK_COMMAND NAMES valgrind)
- set (CTEST_CONFIGURE_COMMAND
- "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/mccacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_CONFIGURATION_TYPE} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_SOURCE_DIRECTORY}\""
- )
- else()
- if(LOCAL_COVERAGE_TEST)
- find_program(CTEST_COVERAGE_COMMAND NAMES gcov)
- endif()
- set (CTEST_CONFIGURE_COMMAND
- "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_CONFIGURATION_TYPE} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_SOURCE_DIRECTORY}\""
- )
+if(LOCAL_MEMCHECK_TEST)
+ find_program(CTEST_MEMORYCHECK_COMMAND NAMES valgrind)
+ set (CTEST_CONFIGURE_COMMAND
+ "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/mccacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_CONFIGURATION_TYPE} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_SOURCE_DIRECTORY}\""
+ )
+else()
+ if(LOCAL_COVERAGE_TEST)
+ find_program(CTEST_COVERAGE_COMMAND NAMES gcov)
endif()
+ set (CTEST_CONFIGURE_COMMAND
+ "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_CONFIGURATION_TYPE} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_SOURCE_DIRECTORY}\""
+ )
endif()
-
+
#-----------------------------------------------------------------------------
## -- set output to english
set($ENV{LC_MESSAGES} "en_EN")
diff --git a/config/cmake/scripts/HDF5config.cmake b/config/cmake/scripts/HDF5config.cmake
index 8e3b7b0..580675e 100755
--- a/config/cmake/scripts/HDF5config.cmake
+++ b/config/cmake/scripts/HDF5config.cmake
@@ -1,7 +1,7 @@
#############################################################################################
### ${CTEST_SCRIPT_ARG} is of the form OPTION=VALUE ###
### BUILD_GENERATOR required [Unix, VS2015, VS201564, VS2013, VS201364, VS2012, VS201264] ###
-### ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201264 -C Release -V -O hdf5.log ###
+### ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201264 -C Release -VV -O hdf5.log ###
#############################################################################################
cmake_minimum_required(VERSION 3.2.2 FATAL_ERROR)
@@ -152,12 +152,28 @@ if(WIN32)
## Set the following to unique id your computer ##
set(CTEST_SITE "WIN7${BUILD_GENERATOR}.XXXX")
else()
+ set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
## Set the following to unique id your computer ##
if(APPLE)
set(CTEST_SITE "MAC.XXXX")
else()
set(CTEST_SITE "LINUX.XXXX")
endif()
+ if(APPLE)
+ execute_process(COMMAND xcrun --find cc OUTPUT_VARIABLE XCODE_CC OUTPUT_STRIP_TRAILING_WHITESPACE)
+ execute_process(COMMAND xcrun --find c++ OUTPUT_VARIABLE XCODE_CXX OUTPUT_STRIP_TRAILING_WHITESPACE)
+ set(ENV{CC} "${XCODE_CC}")
+ set(ENV{CXX} "${XCODE_CXX}")
+ set(CTEST_USE_LAUNCHERS 1)
+ set(RR_WARNINGS_COMMON "-Wno-format-nonliteral -Wno-cast-align -Wno-unused -Wno-unused-variable -Wno-unused-function -Wno-self-assign -Wno-unused-parameter -Wno-sign-compare")
+ set(RR_WARNINGS_C "${RR_WARNINGS_COMMON} -Wno-deprecated-declarations -Wno-uninitialized")
+ set(RR_WARNINGS_CXX "${RR_WARNINGS_COMMON} -Woverloaded-virtual -Wshadow -Wwrite-strings -Wc++11-compat")
+ set(RR_FLAGS_COMMON "-g -O0 -fstack-protector-all -D_FORTIFY_SOURCE=2")
+ set(RR_FLAGS_C "${RR_FLAGS_COMMON}")
+ set(RR_FLAGS_CXX "${RR_FLAGS_COMMON}")
+ set(ENV{CFLAGS} "${RR_WARNINGS_C} ${RR_FLAGS_C}")
+ set(ENV{CXXFLAGS} "${RR_WARNINGS_CXX} ${RR_FLAGS_CXX}")
+ endif()
endif()
###################################################################
@@ -178,16 +194,14 @@ set(MODEL "Experimental")
#set(LOCAL_NO_PACKAGE "TRUE")
##### Following controls source update #####
#set(LOCAL_UPDATE "TRUE")
-set(REPOSITORY_URL "http://svn.hdfgroup.uiuc.edu/hdf5/trunk")
+set(REPOSITORY_URL "https://git@bitbucket.hdfgroup.org/scm/hdffv/hdf5.git")
+set(REPOSITORY_BRANCH "develop")
+
#uncomment to use a compressed source file: *.tar on linux or mac *.zip on windows
#set(CTEST_USE_TAR_SOURCE "${CTEST_SOURCE_VERSION}")
###################################################################
###################################################################
-#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
-#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")
-
-###################################################################
if(${STATICLIBRARIES})
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF")
######### Following describes computer ############
@@ -195,26 +209,15 @@ if(${STATICLIBRARIES})
set(SITE_BUILDNAME_SUFFIX "STATIC")
endif()
###################################################################
-
-### uncomment/comment and change the following lines for other configuration options
-
-#### ext libraries ####
-### ext libs from tgz
-set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}")
-### ext libs from svn
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=SVN")
-### ext libs on system
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
-### disable ext libs building
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
#### fortran ####
if(${FORTRANLIBRARIES})
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
+ ### enable Fortran 2003 depends on HDF5_BUILD_FORTRAN
+ set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=ON")
else()
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
+ ### enable Fortran 2003 depends on HDF5_BUILD_FORTRAN
+ set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=OFF")
endif()
#### java ####
if(${JAVALIBRARIES})
@@ -223,57 +226,53 @@ else()
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
endif()
-### disable test program builds
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
-
-### disable packaging
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
-### Create install package with external libraries (szip, zlib, jpeg)
-set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
-
### change install prefix
-set(BUILD_OPTIONS "${BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=${INSTALLDIR}")
-set(BUILD_OPTIONS "${BUILD_OPTIONS} -DCTEST_CONFIGURATION_TYPE:STRING=$ENV{CMAKE_CONFIG_TYPE}")
+set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=${INSTALLDIR}")
+set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCTEST_CONFIGURATION_TYPE:STRING=$ENV{CMAKE_CONFIG_TYPE}")
###################################################################
if(WIN32)
+ set(BINFILEBASE "HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-win${SITE_OS_BITS}")
+ include(${CTEST_SCRIPT_DIRECTORY}\\HDF5options.cmake)
include(${CTEST_SCRIPT_DIRECTORY}\\CTestScript.cmake)
- if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-win${SITE_OS_BITS}.exe")
- file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-win${SITE_OS_BITS}.exe" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+ if(EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.exe")
+ file(COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.exe" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
- if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-win${SITE_OS_BITS}.msi")
- file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-win${SITE_OS_BITS}.msi" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+ if(EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.msi")
+ file(COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.msi" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
- if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-win${SITE_OS_BITS}.zip")
- file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-win${SITE_OS_BITS}.zip" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+ if(EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.zip")
+ file(COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.zip" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
else()
+ set(BINFILEBASE "HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}")
+ include(${CTEST_SCRIPT_DIRECTORY}/HDF5options.cmake)
include(${CTEST_SCRIPT_DIRECTORY}/CTestScript.cmake)
if(APPLE)
- if(EXISTS "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-Darwin.dmg")
- file(COPY "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-Darwin.dmg" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+ if(EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.dmg")
+ file(COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.dmg" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
- if(EXISTS "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-Darwin.tar.gz")
- file(COPY "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-Darwin.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+ if(EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.tar.gz")
+ file(COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
- if(EXISTS "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-Darwin.sh")
- file(COPY "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-Darwin.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+ if(EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.sh")
+ file(COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
else()
if(CYGWIN)
- if(EXISTS "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-CYGWIN.sh")
- file(COPY "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-CYGWIN.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+ if(EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.sh")
+ file(COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
- if(EXISTS "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-CYGWIN.tar.gz")
- file(COPY "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-CYGWIN.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+ if(EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.tar.gz")
+ file(COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
else()
- if(EXISTS "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-Linux.sh")
- file(COPY "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-Linux.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+ if(EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.sh")
+ file(COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
- if(EXISTS "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-Linux.tar.gz")
- file(COPY "${CTEST_BINARY_DIRECTORY}/HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-Linux.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+ if(EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.tar.gz")
+ file(COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
endif()
endif()
diff --git a/config/cmake/scripts/HDF5options.cmake b/config/cmake/scripts/HDF5options.cmake
new file mode 100755
index 0000000..8f955e7
--- /dev/null
+++ b/config/cmake/scripts/HDF5options.cmake
@@ -0,0 +1,33 @@
+#############################################################################################
+#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
+#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
+#############################################################################################
+
+### uncomment/comment and change the following lines for other configuration options
+
+#############################################################################################
+#### ext libraries ####
+### ext libs from tgz
+set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}")
+### ext libs from git
+#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=GIT")
+### ext libs on system
+#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
+#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
+### disable ext zlib building
+#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
+### disable ext szip building
+#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
+#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
+
+#############################################################################################
+### disable test program builds
+#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
+
+#############################################################################################
+### disable packaging
+#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
+### Create install package with external libraries (szip, zlib, jpeg)
+set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
+
+#############################################################################################
diff --git a/config/cmake_ext_mod/FindMPI.cmake b/config/cmake_ext_mod/FindMPI.cmake
index 1a02f82..5e8084c 100644
--- a/config/cmake_ext_mod/FindMPI.cmake
+++ b/config/cmake_ext_mod/FindMPI.cmake
@@ -114,9 +114,10 @@ include(GetPrerequisites)
#
# Start out with the generic MPI compiler names, as these are most commonly used.
-set(_MPI_C_COMPILER_NAMES mpicc mpcc mpicc_r mpcc_r)
+set(_MPI_C_COMPILER_NAMES mpicc mpcc mpicc_r mpcc_r mpicc.bat)
set(_MPI_CXX_COMPILER_NAMES mpicxx mpiCC mpcxx mpCC mpic++ mpc++
- mpicxx_r mpiCC_r mpcxx_r mpCC_r mpic++_r mpc++_r)
+ mpicxx_r mpiCC_r mpcxx_r mpCC_r mpic++_r mpc++_r
+ mpicxx.bat)
set(_MPI_Fortran_COMPILER_NAMES mpif95 mpif95_r mpf95 mpf95_r
mpif90 mpif90_r mpf90 mpf90_r
mpif77 mpif77_r mpf77 mpf77_r)
@@ -128,9 +129,9 @@ set(_MPI_GNU_Fortran_COMPILER_NAMES mpigfortran mpgfortran mpigfortran_r
mpig77 mpig77_r mpg77 mpg77_r)
# Intel MPI compiler names
-set(_MPI_Intel_C_COMPILER_NAMES mpiicc)
-set(_MPI_Intel_CXX_COMPILER_NAMES mpiicpc mpiicxx mpiic++ mpiiCC)
-set(_MPI_Intel_Fortran_COMPILER_NAMES mpiifort mpiif95 mpiif90 mpiif77)
+set(_MPI_Intel_C_COMPILER_NAMES mpiicc mpiicc.bat)
+set(_MPI_Intel_CXX_COMPILER_NAMES mpiicpc mpiicxx mpiic++ mpiiCC mpiicpc.bat)
+set(_MPI_Intel_Fortran_COMPILER_NAMES mpiifort mpiif95 mpiif90 mpiif77 mpiifort.bat)
# PGI compiler names
set(_MPI_PGI_C_COMPILER_NAMES mpipgcc mppgcc)
@@ -315,7 +316,7 @@ function (interrogate_mpi_compiler lang try_libs)
foreach(FLAG ${MPI_ALL_COMPILE_FLAGS})
if (MPI_COMPILE_FLAGS_WORK)
- string(APPEND MPI_COMPILE_FLAGS_WORK " ${FLAG}")
+ set(MPI_COMPILE_FLAGS_WORK "${MPI_COMPILE_FLAGS_WORK} ${FLAG}")
else()
set(MPI_COMPILE_FLAGS_WORK ${FLAG})
endif()
@@ -326,6 +327,8 @@ function (interrogate_mpi_compiler lang try_libs)
foreach(IPATH ${MPI_ALL_INCLUDE_PATHS})
string(REGEX REPLACE "^ ?-I" "" IPATH ${IPATH})
string(REPLACE "//" "/" IPATH ${IPATH})
+ string(REPLACE "\"" "" IPATH ${IPATH})
+ file(TO_CMAKE_PATH "${IPATH}" IPATH)
list(APPEND MPI_INCLUDE_PATH_WORK ${IPATH})
endforeach()
@@ -364,7 +367,7 @@ function (interrogate_mpi_compiler lang try_libs)
set(MPI_LINK_FLAGS_WORK)
foreach(FLAG ${MPI_ALL_LINK_FLAGS})
if (MPI_LINK_FLAGS_WORK)
- string(APPEND MPI_LINK_FLAGS_WORK " ${FLAG}")
+ set(MPI_LINK_FLAGS_WORK "${MPI_LINK_FLAGS_WORK} ${FLAG}")
else()
set(MPI_LINK_FLAGS_WORK ${FLAG})
endif()
@@ -386,8 +389,7 @@ function (interrogate_mpi_compiler lang try_libs)
# in the showme list that can only be found in the implicit
# link directories of the compiler.
if (DEFINED CMAKE_${lang}_IMPLICIT_LINK_DIRECTORIES)
- string(APPEND MPI_LINK_PATH
- ";${CMAKE_${lang}_IMPLICIT_LINK_DIRECTORIES}")
+ set(MPI_LINK_PATH "${MPI_LINK_PATH};${CMAKE_${lang}_IMPLICIT_LINK_DIRECTORIES}")
endif ()
# Determine full path names for all of the libraries that one needs
@@ -466,7 +468,7 @@ function (interrogate_mpi_compiler lang try_libs)
if (MPI_INCLUDE_PATH_WORK AND MPI_HEADER_PATH)
list(APPEND MPI_INCLUDE_PATH_WORK ${MPI_HEADER_PATH})
endif()
-
+
set(MPI_LIB "MPI_LIB-NOTFOUND" CACHE FILEPATH "Cleared" FORCE)
find_library(MPI_LIB
NAMES fmpi fmpich fmpich2 fmpich2g msmpifec msmpifmc
diff --git a/config/cmake_ext_mod/runTest.cmake b/config/cmake_ext_mod/runTest.cmake
index 804c80f..0a77dae 100644
--- a/config/cmake_ext_mod/runTest.cmake
+++ b/config/cmake_ext_mod/runTest.cmake
@@ -144,6 +144,13 @@ if (TEST_FILTER)
file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
endif ()
+if (TEST_REF_FILTER)
+ #message (STATUS "TEST_REF_FILTER: ${TEST_APPEND}${TEST_REF_FILTER}")
+ file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM)
+ STRING(REGEX REPLACE "${TEST_REF_APPEND}" "${TEST_REF_FILTER}" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
+endif (TEST_REF_FILTER)
+
# compare output files to references unless this must be skipped
if (NOT TEST_SKIP_COMPARE)
if (WIN32 AND NOT MINGW)
@@ -151,11 +158,22 @@ if (NOT TEST_SKIP_COMPARE)
file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
endif ()
- # now compare the output with the reference
- execute_process (
- COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
- RESULT_VARIABLE TEST_RESULT
- )
+ if (NOT TEST_SORT_COMPARE)
+ # now compare the output with the reference
+ execute_process (
+ COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
+ RESULT_VARIABLE TEST_RESULT
+ )
+ else ()
+ file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1)
+ file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2)
+ list (SORT v1)
+ list (SORT v2)
+ if (NOT v1 STREQUAL v2)
+ set(TEST_RESULT 1)
+ endif ()
+ endif ()
+
if (NOT ${TEST_RESULT} STREQUAL 0)
set (TEST_RESULT 0)
file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act)
diff --git a/fortran/testpar/CMakeLists.txt b/fortran/testpar/CMakeLists.txt
index ae88ebc..2e4ebc8 100644
--- a/fortran/testpar/CMakeLists.txt
+++ b/fortran/testpar/CMakeLists.txt
@@ -4,7 +4,7 @@ PROJECT (HDF5_FORTRAN_TESTPAR C CXX Fortran)
#-----------------------------------------------------------------------------
# Setup include Directories
#-----------------------------------------------------------------------------
-INCLUDE_DIRECTORIES (${HDF5_F90_BINARY_DIR} ${HDF5_F90_SRC_DIR}/src)
+INCLUDE_DIRECTORIES (${HDF5_F90_BINARY_DIR} ${HDF5_F90_SRC_DIR}/src ${MPI_Fortran_INCLUDE_PATH})
#-----------------------------------------------------------------------------
# Add Tests
@@ -22,7 +22,7 @@ target_link_libraries (parallel_test
${HDF5_F90_TEST_LIB_TARGET}
${HDF5_F90_LIB_TARGET}
${HDF5_LIB_TARGET}
- ${MPI_Fortran_LIBRARIES}
+ ${LINK_Fortran_LIBS}
)
if (WIN32 AND MSVC)
target_link_libraries (parallel_test "ws2_32.lib")
diff --git a/test/cache_image.c b/test/cache_image.c
index c91914d..946d46b 100644
--- a/test/cache_image.c
+++ b/test/cache_image.c
@@ -6305,6 +6305,13 @@ cache_image_api_error_check_3(void)
if ( pass ) {
+ if ( H5Fclose(file_id) < 0 ) {
+
+ pass = FALSE;
+ failure_mssg = "H5Fclose() failed.\n";
+
+ }
+
if ( HDremove(filename) < 0 ) {
pass = FALSE;
diff --git a/tools/test/h5diff/CMakeTests.cmake b/tools/test/h5diff/CMakeTests.cmake
index d098746..064e1dd 100644
--- a/tools/test/h5diff/CMakeTests.cmake
+++ b/tools/test/h5diff/CMakeTests.cmake
@@ -370,13 +370,18 @@
-D "TEST_ARGS:STRING=${ARGN}"
-D "TEST_FOLDER=${PROJECT_BINARY_DIR}/PAR/testfiles"
-D "TEST_OUTPUT=${resultfile}.out"
- -D "TEST_EXPECT=${resultcode}"
+ -D "TEST_EXPECT=0"
-D "TEST_REFERENCE=${resultfile}.txt"
-# -D "TEST_APPEND=EXIT CODE: [0-9]"
-# -D "TEST_REF_FILTER=EXIT CODE: 0"
- -D "TEST_SKIP_COMPARE=TRUE"
+ -D "TEST_APPEND=EXIT CODE:"
+ -D "TEST_REF_APPEND=EXIT CODE: [0-9]"
+ -D "TEST_REF_FILTER=EXIT CODE: 0"
+ -D "TEST_SORT_COMPARE=TRUE"
-P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
)
+ if (NOT "${last_test}" STREQUAL "")
+ set_tests_properties (PH5DIFF-${resultfile} PROPERTIES DEPENDS ${last_test})
+ endif ()
+ set (last_test "PH5DIFF-${resultfile}")
endif ()
ENDMACRO ()
generated by cgit v0.12 at 2024-09-04 03:10:52 (GMT)