diff options
| -rw-r--r-- | README.txt | 2 | ||||
| -rwxr-xr-x | c++/configure | 18 | ||||
| -rw-r--r-- | c++/configure.in | 2 | ||||
| -rwxr-xr-x | configure | 18 | ||||
| -rw-r--r-- | configure.in | 2 | ||||
| -rw-r--r-- | doc/html/ADGuide/RELEASE.txt | 238 | ||||
| -rwxr-xr-x | fortran/configure | 18 | ||||
| -rw-r--r-- | fortran/configure.in | 2 | ||||
| -rw-r--r-- | release_docs/RELEASE.txt | 29 | ||||
| -rw-r--r-- | src/H5public.h | 4 |
10 files changed, 151 insertions, 182 deletions
@@ -1,4 +1,4 @@ -HDF5 version 1.6.5-pre4 currently under development +HDF5 version 1.6.5 released on Thu Nov 10 18:17:53 CST 2005 Please refer to the release_docs/INSTALL file for installation instructions. ------------------------------------------------------------------------------ diff --git a/c++/configure b/c++/configure index 78f30e7..c8e5e30 100755 --- a/c++/configure +++ b/c++/configure @@ -1,7 +1,7 @@ #! /bin/sh # From c++/configure.in Id: configure.in. # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.59 for HDF5 C++ 1.6.5-pre4. +# Generated by GNU Autoconf 2.59 for HDF5 C++ 1.6.5. # # Report bugs to <hdfhelp@ncsa.uiuc.edu>. # @@ -429,8 +429,8 @@ SHELL=${CONFIG_SHELL-/bin/sh} # Identity of this package. PACKAGE_NAME='HDF5 C++' PACKAGE_TARNAME='hdf5-c--' -PACKAGE_VERSION='1.6.5-pre4' -PACKAGE_STRING='HDF5 C++ 1.6.5-pre4' +PACKAGE_VERSION='1.6.5' +PACKAGE_STRING='HDF5 C++ 1.6.5' PACKAGE_BUGREPORT='hdfhelp@ncsa.uiuc.edu' ac_unique_file="src/H5Library.cpp" @@ -952,7 +952,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 C++ 1.6.5-pre4 to adapt to many kinds of systems. +\`configure' configures HDF5 C++ 1.6.5 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1013,7 +1013,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 C++ 1.6.5-pre4:";; + short | recursive ) echo "Configuration of HDF5 C++ 1.6.5:";; esac cat <<\_ACEOF @@ -1152,7 +1152,7 @@ fi test -n "$ac_init_help" && exit 0 if $ac_init_version; then cat <<\_ACEOF -HDF5 C++ configure 1.6.5-pre4 +HDF5 C++ configure 1.6.5 generated by GNU Autoconf 2.59 Copyright (C) 2003 Free Software Foundation, Inc. @@ -1166,7 +1166,7 @@ cat >&5 <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 C++ $as_me 1.6.5-pre4, which was +It was created by HDF5 C++ $as_me 1.6.5, which was generated by GNU Autoconf 2.59. Invocation command line was $ $0 $@ @@ -10990,7 +10990,7 @@ _ASBOX } >&5 cat >&5 <<_CSEOF -This file was extended by HDF5 C++ $as_me 1.6.5-pre4, which was +This file was extended by HDF5 C++ $as_me 1.6.5, which was generated by GNU Autoconf 2.59. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -11045,7 +11045,7 @@ _ACEOF cat >>$CONFIG_STATUS <<_ACEOF ac_cs_version="\\ -HDF5 C++ config.status 1.6.5-pre4 +HDF5 C++ config.status 1.6.5 configured by $0, generated by GNU Autoconf 2.59, with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\" diff --git a/c++/configure.in b/c++/configure.in index dc44405..fe86901 100644 --- a/c++/configure.in +++ b/c++/configure.in @@ -27,7 +27,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5 C++], [1.6.5-pre4], [hdfhelp@ncsa.uiuc.edu]) +AC_INIT([HDF5 C++], [1.6.5], [hdfhelp@ncsa.uiuc.edu]) AC_CONFIG_SRCDIR([src/H5Library.cpp]) AC_CONFIG_AUX_DIR([../bin]) @@ -1,7 +1,7 @@ #! /bin/sh # From configure.in Id: configure.in. # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.59 for HDF5 1.6.5-pre4. +# Generated by GNU Autoconf 2.59 for HDF5 1.6.5. # # Report bugs to <hdfhelp@ncsa.uiuc.edu>. # @@ -429,8 +429,8 @@ SHELL=${CONFIG_SHELL-/bin/sh} # Identity of this package. PACKAGE_NAME='HDF5' PACKAGE_TARNAME='hdf5' -PACKAGE_VERSION='1.6.5-pre4' -PACKAGE_STRING='HDF5 1.6.5-pre4' +PACKAGE_VERSION='1.6.5' +PACKAGE_STRING='HDF5 1.6.5' PACKAGE_BUGREPORT='hdfhelp@ncsa.uiuc.edu' ac_unique_file="src/H5.c" @@ -942,7 +942,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 1.6.5-pre4 to adapt to many kinds of systems. +\`configure' configures HDF5 1.6.5 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1003,7 +1003,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 1.6.5-pre4:";; + short | recursive ) echo "Configuration of HDF5 1.6.5:";; esac cat <<\_ACEOF @@ -1181,7 +1181,7 @@ fi test -n "$ac_init_help" && exit 0 if $ac_init_version; then cat <<\_ACEOF -HDF5 configure 1.6.5-pre4 +HDF5 configure 1.6.5 generated by GNU Autoconf 2.59 Copyright (C) 2003 Free Software Foundation, Inc. @@ -1195,7 +1195,7 @@ cat >&5 <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 $as_me 1.6.5-pre4, which was +It was created by HDF5 $as_me 1.6.5, which was generated by GNU Autoconf 2.59. Invocation command line was $ $0 $@ @@ -37063,7 +37063,7 @@ _ASBOX } >&5 cat >&5 <<_CSEOF -This file was extended by HDF5 $as_me 1.6.5-pre4, which was +This file was extended by HDF5 $as_me 1.6.5, which was generated by GNU Autoconf 2.59. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -37126,7 +37126,7 @@ _ACEOF cat >>$CONFIG_STATUS <<_ACEOF ac_cs_version="\\ -HDF5 config.status 1.6.5-pre4 +HDF5 config.status 1.6.5 configured by $0, generated by GNU Autoconf 2.59, with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\" diff --git a/configure.in b/configure.in index 4edef65..378d232 100644 --- a/configure.in +++ b/configure.in @@ -24,7 +24,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5], [1.6.5-pre4], [hdfhelp@ncsa.uiuc.edu]) +AC_INIT([HDF5], [1.6.5], [hdfhelp@ncsa.uiuc.edu]) AC_CONFIG_SRCDIR([src/H5.c]) AC_CONFIG_HEADER([src/H5config.h]) diff --git a/doc/html/ADGuide/RELEASE.txt b/doc/html/ADGuide/RELEASE.txt index 88c9b21..823eec5 100644 --- a/doc/html/ADGuide/RELEASE.txt +++ b/doc/html/ADGuide/RELEASE.txt @@ -1,11 +1,11 @@ -HDF5 version 1.6.5-pre3 released on Sun Nov 6 17:45:25 CST 2005 +HDF5 version 1.6.5 released on Thu Nov 10 18:17:53 CST 2005 ================================================================================ INTRODUCTION ============ This document describes the differences between HDF5-1.6.4 and -HDF5-1.6.4-post*, and contains information on the platforms tested and -known problems in HDF5-1.6.4. For more details check the HISTORY.txt +HDF5-1.6.5. It contains information on the platforms tested and +known problems in HDF5-1.6.5. For more details, check the HISTORY.txt file in the HDF5 source. The HDF5 documentation can be found on the NCSA ftp server @@ -13,8 +13,12 @@ The HDF5 documentation can be found on the NCSA ftp server /HDF/HDF5/docs/ +Documentation for the current release is also on the HDF web site: + + http://hdf.ncsa.uiuc.edu/HDF5/doc/ + For more information look at the HDF5 home page at: - + http://hdf.ncsa.uiuc.edu/HDF5/ If you have any questions or comments, please send them to: @@ -25,7 +29,7 @@ If you have any questions or comments, please send them to: CONTENTS ======== - New Features -- Support for new platforms and languages +- Support for New Platforms, Languages and Compilers - Bug Fixes since HDF5-1.6.4 - Documentation - Platforms Tested @@ -37,6 +41,9 @@ New Features ============ Configuration: ------------------------- + - Added yodconfigure, a configure tool, that patches up the configure + file to allow configure to launch executable via the proper + launching command like "yod -sz 1". AKC - 2005/11/10 - Configure now recognizes the TR variable as the location of the tr utility. JML 2005/10/20 @@ -44,65 +51,66 @@ New Features ------------------------- - Added g95 as a testing "platform" informally. AKC - 2005/10/04. - Added MD5 checksumming to snapshot releases. Releases will now - produce a .md5 file as well as a .tar archive. md5sum can be + produce an .md5 file as well as a .tar archive. md5sum can be used to verify the arvhice with the .md5 checksum. -JL 2005/09/06 Library: -------- - - Added HSYS_ERROR which retrieves the system error message and pushes - it to the error stack. This gives more information of the failed - system call. AKC - 2005/08/04 - - Added H5F_OBJ_LOCAL flag to H5Fget_obj_count() & H5Fget_obj_ids(), to - allow querying for objects in file that were opened with a particular - file ID, instead of all objects opened in file with any file ID. + - Added HSYS_ERROR which retrieves the system error message and pushes + it to the error stack. This provides more information regarding the + failed system call. AKC - 2005/08/04 + - Added H5F_OBJ_LOCAL flag to H5Fget_obj_count() & H5Fget_obj_ids(), to + allow querying for objects in a file that was opened with a particular + file ID, instead of all objects opened in the file with any file ID. QAK - 2005/06/01 Parallel Library: ----------------- - Added mpich2 as a testing "platform" informally. AKC - 2005/10/04. - HDF5 supports collective MPI-IO for irregular selection with HDF5 - dataset. Irregular selection is when users use API H5Sselect_hyperslab - more than once for the same dataset. - Currently, not all MPI-IO packages support complicated MPI derived - datatype used in the implementation of irregular - selection INSIDE HDF5. - 1) DEC 5.x is not supporting complicated derived datatype. - 2) For AIX 5.1, - if your poe version number is 3.2.0.20 or lower, - please edit powerpc-ibm-aix5.x under hdf5/config, + dataset. Irregular selection is when users use API H5Sselect_hyperslab + more than once for the same dataset. + Currently, not all MPI-IO packages support the complicated + MPI derived datatypes used in the implementation of irregular + selections INSIDE HDF5. + 1) DEC 5.x wdoes not support complicated derived datatypes. + 2) For AIX 5.1: + If your poe version number is 3.2.0.20 or lower, + please edit powerpc-ibm-aix5.x in the directory hdf5/config/. Find the line with - << hdf5_mpi_complex_derived_datatype_works>> + << hdf5_mpi_complex_derived_datatype_works >> and UNCOMMENT this line before the configure. check poe version with the following command: lpp -l all | grep ppe.poe - 3) For Linux cluster, - if mpich version is 1.2.5 or lower, collective irregular selection - IO is not supported, internally independent IO is used. - 4) For IRIX 6.5, - if C compiler version is 7.3 or lower, collective irregular selection - IO is not supported, internally independent IO is used. - 5) For platforms which internally used mpich, if the - mpich version is 1.2.5 or lower, please find the - corresponding config file and add - hdf5_mpi_complex_derived_datatype_works='no' at the - end of the configuration file. For example, at NCSA - SGI Altix, the internal mpich library is 1.2.5. So - hdf5_mpi_complex_derived_datatype_works='no' should be - added at the end of the config file ia64-linux-gnu. - KY - 2005/09/12 + 3) For Linux cluster,: + If mpich version is 1.2.5 or lower, collective irregular selection + IO is not supported; internally independent IO is used. + 4) For IRIX 6.5: + if C compiler version is 7.3 or lower, collective irregular + selection IO is not supported; internally independent IO is used. + 5) For platforms which internally used mpich: + If the mpich version is 1.2.5 or lower, please find the + corresponding config (in hdf5/config) file and add + hdf5_mpi_complex_derived_datatype_works='no' + at the end of the configuration file. For example, on the + NCSA SGI Altix, the internal mpich library is 1.2.5. So + hdf5_mpi_complex_derived_datatype_works='no' + should be added at the end of the config file ia64-linux-gnu. + KY - 2005/09/12 + Tools: ------ - - Removed obsolete pdb2hdf tool. JML - 2005/10/28 + - Removed obsolete pdb2hdf tool. JML - 2005/10/28 - Sped up h5dump on files with large numbers of objects. QAK - 2005/08/25 F90 API: -------- - - Added missing h5tget_member_class_f function + - Added missing h5tget_member_class_f function EIP 2005/04/06 C++ API: -------- - - Added missing member functions + - Added missing member functions: H5::CompType::getMemberArrayType H5::CompType::getMemberVarLenType H5::AbstractDs::getArrayType @@ -115,9 +123,10 @@ New Features BMR - 2005/07/27 -Support for new platforms, languages and compilers. -======================================= - +Support for New Platforms, Languages and Compilers +================================================== + - Added support for RedStorm platform (serial only.) AKC 2005/11/10 + - Added support for BG/L platform (serial only.) LA 2005/11/10 - Added support for HPUX 11.23 (IA64); only C and C++ are supported with the +DD64 flag EIP 2005/10/05 @@ -128,28 +137,27 @@ Support for new platforms, languages and compilers. - Added support for Cray X1. JML 2005/10/03 -Bug Fixes since HDF5-1.6.4 release +Bug Fixes since HDF5-1.6.4 Release ================================== Library ------- - - Fixed collective IO in chunking-storage. The dataspace for each - chunk is different with the dataspace for the whole file or buffer. - It may call the wrong routine when the shape of the dataspace in - file and in chunk is different. This bug was fixed to make sure - the correct routine is called. KY - 2005/10/19 + - Fixed collective IO in chunking-storage. HDF5 may have called the + wrong routine when the shape of the dataspace in the file and in + the bufferred chunk were different. This bug was fixed to make sure + the correct routine is called. KY - 2005/10/19 - Fixed core dump when closing root groups opened through two different file handles that operate on the same actual file. QAK - 2005/10/02 - - The ./dsets tests used to fail in the TFLOPS machine if the - test program, dsets.c, was compiled with the -O option. - The hdf5 library still worked correctly with the -O option. Only - the ./dsets failed. It is fixed. AKC - 2005/09/14 + - The ./dsets tests used to fail in the TFLOPS machine if the + test program, dsets.c, was compiled with the -O option. + The HDF5 library still worked correctly with the -O option. Only + the ./dsets failed. It is fixed. AKC - 2005/09/14 - Corrected errors when performing various operations on a group opened by dereferencing an object reference. QAK - 2005/07/30 - Fixed a bug with named datatypes where a copy of a named datatype used to create a dataset would accidentally use the original named datatype for the dataset's datatype. QAK - 2005/07/23 - - Made H5Fget_name() be consistent and always return name of actual + - Made H5Fget_name() to be consistent and always return name of actual file the ID is in. (Instead of the name of the top file in a file mounting hierarchy). QAK - 2005/07/19 - Reworked internal file mounting semantics to hopefully eliminate @@ -157,12 +165,10 @@ Bug Fixes since HDF5-1.6.4 release together all have the same "file close degree". QAK - 2005/07/19 - More bug fixes on holding open files that are mounted and have IDs open. QAK - 2005/07/14 - - More bug fixes on holding open files that are mounted and have - IDs open. QAK - 2005/07/14 - - Dataset sieve buffer cache was inadvertantly disabled - re-enable - it. QAK - 2005/07/08 + - Dataset sieve buffer cache was inadvertantly disabled; it has been + re-enabled. QAK - 2005/07/08 - Don't unmount child files until the parent file actually closes. - (Previously, if an object is holding open a file, the child files + (Previously, if an object was holding open a file, the child files would get unmounted too early). QAK - 2005/07/05 - Fixed bug where unmounted files could cause the library to go into an infinite loop when shutting down. QAK - 2005/06/30 @@ -178,7 +184,7 @@ Bug Fixes since HDF5-1.6.4 release - "SEMI" and "STRONG" file close degree settings now apply only to the particular file ID being closed, instead of operating on all open file IDs for a given file. QAK - 2005/06/01 - - Fixed error in opening object in group that was opened in mounted + - Fixed error in opening object in a group that was opened in a mounted file which has been unmounted. QAK - 2005/03/17 Configuration @@ -191,8 +197,8 @@ Bug Fixes since HDF5-1.6.4 release Performance ------------- - - Optimized I/O for enumerated datatypes that are a superset of source - enumerated datatype. QAK - 2005/03/19 + - Optimized I/O for enumerated datatypes that are a superset of a + source enumerated datatype. QAK - 2005/03/19 Tools ----- @@ -203,9 +209,8 @@ Bug Fixes since HDF5-1.6.4 release F90 API ------- - h5pget_driver_f was returning information that could not be - interpreted by fortran application program; fixed. EIP - 2005/04/10 + interpreted by a Fortran application program; fixed. EIP - 2005/04/10 - C++ API ------- - Several member functions' prototype changed due to the @@ -220,9 +225,7 @@ Bug Fixes since HDF5-1.6.4 release -Documentation -============= - + Platforms Tested ================ @@ -298,12 +301,10 @@ Platforms Tested SunOS 5.9 32,64 Sun C 5.6 2004/07/15 (Solaris 2.9) Sun Fortran 95 8.0 2004/07/15 Sun C++ 5.6 2004/07/15 - Solaris 5.10 Sun WorkShop 6 update 2 C 5.3 + SunOS 5.10 Sun WorkShop 6 update 2 C 5.3 Sun WorkShop 6 update 2 Fortran 95 6.2 Sun WorkShop 6 update 2 C++ 5.3 Patch 111685-13 - TFLOPS r1.0.4 v4.5.2 i386 pgcc Rel 3.1-4i with mpich-1.2.4 with - local modifications Xeon Linux 2.4.21-32.0.1.ELsmp-perfctr-lustre (tungsten) Intel(R) C++ Version 9.0 Intel(R) Fortran Compiler Version 9.0 @@ -332,6 +333,7 @@ Key: y = tested and supported Platform C F90 F90 C++ zlib SZIP parallel parallel +IBM BG/L (16) n n n n y y Solaris2.8 64-bit y y y(1) y y y Solaris2.8 32-bit y y y(1) y y y Solaris2.9 64-bit y(1) y y(1) y y y @@ -345,7 +347,6 @@ HPUX11.23-32bit n y n y y y HPUX11.23-64bit n n n y y y OSF1 v5.1 y y y y y y X1 y y y y y n -TFLOPS y(1) n n n y n AIX-5.1, 5.2 & 5.3 32-bit y y y y y y AIX-5.1, 5.2 & 5.3 64-bit y y y y y y WinXP Visual Studio 6.0 n n(9) n y y y @@ -355,6 +356,7 @@ FreeBSD 4.11 n n n y y y RedHat 7.3 W (3) y(1) y(11) n y y y RedHat 7.3 W Intel (3) n y n y y y RedHat 7.3 W PGI (3) n y n y y y +RedStorm (16) n y n y y n SuSe x86_64 gcc (3,13) n y(12) n y y y SuSe x86_64 icc (3,13) n y(14) n y y y Linux 2.4 Xeon C Lustre Intel (3,6) n y n y y y @@ -364,6 +366,7 @@ Linux 2.4 SGI Altix ia64 Intel (3) y y y y y y Platform Shared static- Thread- STREAM- libraries(4) exec safe VFD +IBM BG/L n y n n Solaris2.8 64-bit y x y y Solaris2.8 32-bit y x y y Solaris2.9 64-bit y x y y @@ -376,7 +379,6 @@ HPUX11.00 y x n y HPUX11.23 y y n y OSF1 v5.1 y y n y X1 n y n y -TFLOPS n y n n AIX-5.1, 5.2 & 5.3 32-bit n y n y AIX-5.1, 5.2 & 5.3 64-bit n y n y WinXP Visual Studio 6.0 y y n n @@ -386,6 +388,7 @@ FreeBSD 4.11 y y y y RedHat 7.3 W (3) y y y y RedHat 7.3 W Intel (3) n y n y RedHat 7.3 W PGI (3) n y n y +RedStorm n y n y SuSe x86_64 gcc (3,13) n y n y SuSe x86_64 icc (3,13) y y(15) n y Linux 2.4 Xeon C Lustre Intel (3,6) y y n y @@ -408,12 +411,11 @@ Footnotes: (1) Using mpich 1.2.6 and Intel compilers (7) Linux 2.4.21, SuSE_292.til1. Ia64 cluster with Intel compilers (8) Intel 8.1 - (9) We found one test of this release failed with compaq visual - fortran 6.6c. - We won't provide binary fortran release. Users should build - the library by themselves and use with their own risks. We - recommend users to use HDF5 1.7 instead. - HDF5 1.7 or use compaq visual fortran 6.0. + (9) One test of this release failed with Compaq Visual Fortran 6.6c. + No binary fortran release will be provided. Users should build + the library by themselves and use it at their own risk. + We recommend that users use HDF5 1.7 instead + or use Compaq Visual Fortran 6.0. (10) IBM XLF and Absoft (11) PGI, Absoft. No shared libraries with Absoft; use '--disable-shared'. @@ -421,28 +423,35 @@ Footnotes: (1) Using mpich 1.2.6 (13) AMD Opteron x86_64 (14) ifort (15) Yes with C and Fortran, but not with C++ - FMB/EIP - 2005/03/15 + (16) Only serial is ported. PFS does not work for PHDF5 yet. + FMB/EIP - 2005/11/10 Known Problems ============== +* Intel Compilers for Linux x86_86 platforms (EM64T-based, v8.1) has + optimization error in the data types conversion code. Before running + configure, edit the file config/intel-flags by changing the setting of + PROD_CFLAGS from -O3 to -O0, then run configure. AKC - 2005/11/10. + * Fortran testing and compiling failures on windows XP 1. Compaq visual fortran 6.6c with VS 6.0 The Fortran tests failed for both release, release dll, debug and debug dll. The failure is a random one. We won't provide fortran libraries. The - same test passed with 1.7.51 snapshot. You may find the 1.7.51 snapshot - under ftp://hdf.ncsa.uiuc.edu/pub/outgoing/hdf5/snapshots/ + same test passed with the 1.7.51 snapshot. You may find the 1.7.51 + snapshot under ftp://hdf.ncsa.uiuc.edu/pub/outgoing/hdf5/snapshots/. 2. Intel fortran 8.1 under .Net environment The fortran library cannot even be compiled. Some users have pointed this to intel forum. + * When testing parallel HDF5 with the C compiler version MIPSpro 7.4.3 at IRIX - 6.5, set enviroment variable MPI_TYPE_MAX to be a bigger number, for example 120000 - in order to pass the complicated collective IO tests inside parallel HDF5 - library. This is not a problem inside parallel HDF5 library. You can always - set a bigger number in your system. + 6.5, set enviroment variable MPI_TYPE_MAX to be a bigger number, for example + 120000, in order to pass the complicated collective IO tests inside parallel + HDF5 library. This is not a problem inside parallel HDF5 library. You can + always set a bigger number in your system. KY - 2005/10/6 -* Contiguous or chunked dataset created by a sequential version may +* A contiguous or chunked dataset created by a sequential version may not be modified with a parallel version of the library. Use the H5Pset_alloc_time function with H5D_ALLOC_TIME_EARLY to set up the dataset creation property list to avoid the problem. @@ -458,19 +467,17 @@ Known Problems after 1.6.4 can still read the dataset created or rewritten with the library of v1.6.2 or before. SLU - 2005/7/8 -* For the version 6(6.02 and 6.04) of Portland Group compiler on AMD Opteron +* For version 6 (6.02 and 6.04) of the Portland Group compiler on AMD Opteron processor, there's a bug in the compiler for optimization(-O2). The library failed in several tests but all related to multi driver. The problem has been reported to the vendor. + * test/big fails sometimes with the message "Possible overlap with another region." The test selects regions randomly, and this error occurs when - two regions overlap each other; it is an bug in the test and not in + two regions overlap each other; it is a bug in the test and not in HDF5. Since the error is triggered by a random situation, it will usually disappear if the test is re-run. -* Cray SV1 fails to correctly convert between floating-point and "long double" - for software conversion. Problem is being investigated. SLU - 2005/03/04 - * Newer SGI MIPSpro compilers (version 7.4.x) support C99 features but it has a "guard" statement in stdint.h that will #error and skip the rest of the header file if C99 option is not used explicitly. Hardset @@ -486,11 +493,11 @@ Known Problems Check if there are many old /tmp/s.pedb.* staying around. These are sockets used by the poe command and left behind due to failed commands. Ask your system administrator to clean them out. Lastly, request IBM - to provide a mean to run poe without the debug socket. + to provide a means to run poe without the debug socket. -* There are two h5dump xml tests(h5dump --xml thlink.h5 and - h5dump --xml tmany.h5) failed on windows xp with .NET for debug and - debug dll. Release and Release dll work fine. +* Two h5dump xml tests(h5dump --xml thlink.h5 and h5dump --xml tmany.h5) + failed on windows xp with .NET for debug and debug dll. Release and + Release dll work fine. * The h5dump tests may fail to match the expected output on some platforms (e.g. parallel jobs, Windows) where the error messages directed to @@ -517,14 +524,8 @@ Known Problems It is suggested that you don't use this option on these platforms during configuration. -* The Stream VFD was not tested yet under Windows. It is not supported - in the TFLOPS machine. +* The Stream VFD was not tested yet under Windows. -* Certain platforms give false negatives when testing h5ls: - - Cray T90IEEE give errors during testing when displaying - some floating-point values. These are benign differences due to - the different precision in the values displayed. - h5ls appears to be dumping floating-point numbers correctly. * Before building HDF5 F90 Library from source on Crays replace H5Aff.f90, H5Dff.f90 and H5Pff.f90 files in the fortran/src @@ -532,16 +533,11 @@ Known Problems from the site: ftp://ftp.ncsa.uiuc.edu/HDF/HDF5/current/src/patches/ -* On some platforms that use Intel and Absoft compilers to build HDF5 fortran - library, compilation may fail for fortranlib_test.f90, fflush1.f90 and - fflush2.f90 complaining about exit subroutine. Comment out the line - IF (total_error .ne. 0) CALL exit (total_error) - * Use --disable-shared configure flag if building with Absoft Fortran - compiler + compiler. * Information about building with PGI and Intel compilers is available in - INSTALL file sections 5.7 and 5.8 + INSTALL file sections 5.7 and 5.8. * In LANL QSC, the new cc compiler has problems converting small values of long long (absolute values less than 1**-308) to double. This triggers @@ -552,22 +548,16 @@ Known Problems occasionally as 1**-308. This has been reported to the system staff. All other tests have passed. -* The C++ library's tests fails when compiling with PGI C++ compiler. The - workaround until the problem is correctly handled is to use the - flag "--instantiate=local" prior to the configure and build steps, as: - setenv CXX "pgCC --instantiate=local" for pgCC 5.02 and higher - setenv CXX "pgCC -tlocal" for others - -* Fortran release DLL randomly failed with compaq visual fortran 6.6c on - windows. +* Fortran release DLL randomly failed with Compaq Visual Fortran 6.6c on + Windows. * Fortran DLL built with Intel 8.1 in .NET environment crushed the compiler, - To build Fortran Static library with Intel 8.1 in .NET environment - needs manually setting the project file, - please contact to hdfhelp@ncsa.uiuc.edu if you need to build - fortran static library with Intel 8.1 with .NET environment. + Building Fortran static library with Intel 8.1 in .NET environment + requires manually setting the project file. + Please contact to hdfhelp@ncsa.uiuc.edu if you need to build + Fortran static library with Intel 8.1 with .NET environment. -* On at least one system, (SDSC DataStar), the scheduler (in this case +* On at least one system, SDSC DataStar, the scheduler (in this case LoadLeveler) sends job status updates to standard error when you run any executable that was compiled with the parallel compilers. @@ -616,8 +606,8 @@ Known Problems "unsetenv RUNSERIAL" before running configure for a serial build. Note that the RUNSERIAL environment variable exists so that we can - can prefix serial runs as necessary on the target system. On DataStar, - no prefix is necessary. However on an MPICH system, the prefix might + prefix serial runs as necessary on the target system. On DataStar, + no prefix is necessary. However, on an MPICH system, the prefix might have to be set to something like "/usr/local/mpi/bin/mpirun -np 1" to get the serial tests to run at all. diff --git a/fortran/configure b/fortran/configure index bc50232..bd956fb 100755 --- a/fortran/configure +++ b/fortran/configure @@ -1,7 +1,7 @@ #! /bin/sh # From fortran/configure.in Id: configure.in. # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.59 for HDF5 Fortran 1.6.5-pre4. +# Generated by GNU Autoconf 2.59 for HDF5 Fortran 1.6.5. # # Report bugs to <hdfhelp@ncsa.uiuc.edu>. # @@ -429,8 +429,8 @@ SHELL=${CONFIG_SHELL-/bin/sh} # Identity of this package. PACKAGE_NAME='HDF5 Fortran' PACKAGE_TARNAME='hdf5-fortran' -PACKAGE_VERSION='1.6.5-pre4' -PACKAGE_STRING='HDF5 Fortran 1.6.5-pre4' +PACKAGE_VERSION='1.6.5' +PACKAGE_STRING='HDF5 Fortran 1.6.5' PACKAGE_BUGREPORT='hdfhelp@ncsa.uiuc.edu' ac_unique_file="src/HDF5.f90" @@ -940,7 +940,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 Fortran 1.6.5-pre4 to adapt to many kinds of systems. +\`configure' configures HDF5 Fortran 1.6.5 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1001,7 +1001,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 Fortran 1.6.5-pre4:";; + short | recursive ) echo "Configuration of HDF5 Fortran 1.6.5:";; esac cat <<\_ACEOF @@ -1144,7 +1144,7 @@ fi test -n "$ac_init_help" && exit 0 if $ac_init_version; then cat <<\_ACEOF -HDF5 Fortran configure 1.6.5-pre4 +HDF5 Fortran configure 1.6.5 generated by GNU Autoconf 2.59 Copyright (C) 2003 Free Software Foundation, Inc. @@ -1158,7 +1158,7 @@ cat >&5 <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 Fortran $as_me 1.6.5-pre4, which was +It was created by HDF5 Fortran $as_me 1.6.5, which was generated by GNU Autoconf 2.59. Invocation command line was $ $0 $@ @@ -12188,7 +12188,7 @@ _ASBOX } >&5 cat >&5 <<_CSEOF -This file was extended by HDF5 Fortran $as_me 1.6.5-pre4, which was +This file was extended by HDF5 Fortran $as_me 1.6.5, which was generated by GNU Autoconf 2.59. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -12251,7 +12251,7 @@ _ACEOF cat >>$CONFIG_STATUS <<_ACEOF ac_cs_version="\\ -HDF5 Fortran config.status 1.6.5-pre4 +HDF5 Fortran config.status 1.6.5 configured by $0, generated by GNU Autoconf 2.59, with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\" diff --git a/fortran/configure.in b/fortran/configure.in index 3d90191..df9acb6 100644 --- a/fortran/configure.in +++ b/fortran/configure.in @@ -24,7 +24,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5 Fortran], [1.6.5-pre4], [hdfhelp@ncsa.uiuc.edu]) +AC_INIT([HDF5 Fortran], [1.6.5], [hdfhelp@ncsa.uiuc.edu]) AC_CONFIG_SRCDIR([src/HDF5.f90]) AC_CONFIG_HEADER([src/H5config_fortran.h]) diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index 6fd2d84..823eec5 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -1,10 +1,10 @@ -HDF5 version 1.6.5-pre4 currently under development +HDF5 version 1.6.5 released on Thu Nov 10 18:17:53 CST 2005 ================================================================================ INTRODUCTION ============ This document describes the differences between HDF5-1.6.4 and -HDF5-1.6.4-post*. It contains information on the platforms tested and +HDF5-1.6.5. It contains information on the platforms tested and known problems in HDF5-1.6.5. For more details, check the HISTORY.txt file in the HDF5 source. @@ -225,9 +225,7 @@ Bug Fixes since HDF5-1.6.4 Release -Documentation -============= - + Platforms Tested ================ @@ -303,7 +301,7 @@ Platforms Tested SunOS 5.9 32,64 Sun C 5.6 2004/07/15 (Solaris 2.9) Sun Fortran 95 8.0 2004/07/15 Sun C++ 5.6 2004/07/15 - Solaris 5.10 Sun WorkShop 6 update 2 C 5.3 + SunOS 5.10 Sun WorkShop 6 update 2 C 5.3 Sun WorkShop 6 update 2 Fortran 95 6.2 Sun WorkShop 6 update 2 C++ 5.3 Patch 111685-13 @@ -480,9 +478,6 @@ Known Problems HDF5. Since the error is triggered by a random situation, it will usually disappear if the test is re-run. -* Cray SV1 fails to correctly convert between floating-point and "long double" - for software conversion. Problem is being investigated. SLU - 2005/03/04 - * Newer SGI MIPSpro compilers (version 7.4.x) support C99 features but it has a "guard" statement in stdint.h that will #error and skip the rest of the header file if C99 option is not used explicitly. Hardset @@ -531,11 +526,6 @@ Known Problems * The Stream VFD was not tested yet under Windows. -* Certain platforms give false negatives when testing h5ls: - - Cray T90IEEE give errors during testing when displaying - some floating-point values. These are benign differences due to - the different precision in the values displayed. - h5ls appears to be dumping floating-point numbers correctly. * Before building HDF5 F90 Library from source on Crays replace H5Aff.f90, H5Dff.f90 and H5Pff.f90 files in the fortran/src @@ -543,11 +533,6 @@ Known Problems from the site: ftp://ftp.ncsa.uiuc.edu/HDF/HDF5/current/src/patches/ -* On some platforms that use Intel and Absoft compilers to build the HDF5 - fortran library, compilation may fail for fortranlib_test.f90, fflush1.f90 - and fflush2.f90 complaining about exit subroutine. Comment out the line - IF (total_error .ne. 0) CALL exit (total_error). - * Use --disable-shared configure flag if building with Absoft Fortran compiler. @@ -563,12 +548,6 @@ Known Problems occasionally as 1**-308. This has been reported to the system staff. All other tests have passed. -* The C++ library's tests fail when compiling with PGI C++ compiler. The - workaround until the problem is correctly handled is to use the - flag "--instantiate=local" prior to the configure and build steps, as follows: - setenv CXX "pgCC --instantiate=local" for pgCC 5.02 and higher - setenv CXX "pgCC -tlocal" for others - * Fortran release DLL randomly failed with Compaq Visual Fortran 6.6c on Windows. diff --git a/src/H5public.h b/src/H5public.h index efc1e7a..e7f76f2 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -75,9 +75,9 @@ extern "C" { #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 6 /* For minor interface/format changes */ #define H5_VERS_RELEASE 5 /* For tweaks, bug-fixes, or development */ -#define H5_VERS_SUBRELEASE "pre4" /* For pre-releases like snap0 */ +#define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.6.5-pre4" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.6.5" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) |