diff options
-rw-r--r-- | src/H5FDhdfs.c | 8 | ||||
-rw-r--r-- | src/H5FDmirror.c | 22 | ||||
-rw-r--r-- | src/H5FDros3.c | 8 | ||||
-rw-r--r-- | src/H5FDs3comms.c | 30 | ||||
-rw-r--r-- | src/H5FDsplitter.c | 6 | ||||
-rw-r--r-- | src/H5Tref.c | 4 | ||||
-rw-r--r-- | src/H5mpi.c | 28 |
7 files changed, 53 insertions, 53 deletions
diff --git a/src/H5FDhdfs.c b/src/H5FDhdfs.c index b4aecfd..38145d0 100644 --- a/src/H5FDhdfs.c +++ b/src/H5FDhdfs.c @@ -674,7 +674,7 @@ H5Pget_fapl_hdfs(hid_t fapl_id, H5FD_hdfs_fapl_t *fa_out) HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "bad VFL driver info") /* Copy the hdfs fapl data out */ - HDmemcpy(fa_out, fa, sizeof(H5FD_hdfs_fapl_t)); + H5MM_memcpy(fa_out, fa, sizeof(H5FD_hdfs_fapl_t)); done: FUNC_LEAVE_API(ret_value) @@ -709,7 +709,7 @@ H5FD__hdfs_fapl_get(H5FD_t *_file) HGOTO_ERROR(H5E_VFL, H5E_CANTALLOC, NULL, "memory allocation failed") /* Copy the fields of the structure */ - HDmemcpy(fa, &(file->fa), sizeof(H5FD_hdfs_fapl_t)); + H5MM_memcpy(fa, &(file->fa), sizeof(H5FD_hdfs_fapl_t)); ret_value = fa; @@ -747,7 +747,7 @@ H5FD__hdfs_fapl_copy(const void *_old_fa) if (new_fa == NULL) HGOTO_ERROR(H5E_VFL, H5E_CANTALLOC, NULL, "memory allocation failed") - HDmemcpy(new_fa, old_fa, sizeof(H5FD_hdfs_fapl_t)); + H5MM_memcpy(new_fa, old_fa, sizeof(H5FD_hdfs_fapl_t)); ret_value = new_fa; done: @@ -904,7 +904,7 @@ H5FD__hdfs_open(const char *path, unsigned flags, hid_t fapl_id, haddr_t maxaddr if (file == NULL) HGOTO_ERROR(H5E_VFL, H5E_CANTALLOC, NULL, "unable to allocate file struct") file->hdfs_handle = handle; - HDmemcpy(&(file->fa), &fa, sizeof(H5FD_hdfs_fapl_t)); + H5MM_memcpy(&(file->fa), &fa, sizeof(H5FD_hdfs_fapl_t)); #if HDFS_STATS if (FAIL == hdfs__reset_stats(file)) diff --git a/src/H5FDmirror.c b/src/H5FDmirror.c index 8f1d25c..7ea9609 100644 --- a/src/H5FDmirror.c +++ b/src/H5FDmirror.c @@ -298,7 +298,7 @@ H5FD__mirror_xmit_decode_uint16(uint16_t *out, const unsigned char *_buf) HDassert(_buf && out); - HDmemcpy(&n, _buf, sizeof(n)); + H5MM_memcpy(&n, _buf, sizeof(n)); *out = (uint16_t)HDntohs(n); return 2; /* number of bytes eaten */ @@ -326,7 +326,7 @@ H5FD__mirror_xmit_decode_uint32(uint32_t *out, const unsigned char *_buf) HDassert(_buf && out); - HDmemcpy(&n, _buf, sizeof(n)); + H5MM_memcpy(&n, _buf, sizeof(n)); *out = (uint32_t)HDntohl(n); return 4; /* number of bytes eaten */ @@ -385,7 +385,7 @@ H5FD__mirror_xmit_decode_uint64(uint64_t *out, const unsigned char *_buf) HDassert(_buf && out); - HDmemcpy(&n, _buf, sizeof(n)); + H5MM_memcpy(&n, _buf, sizeof(n)); if (TRUE == is_host_little_endian()) *out = BSWAP_64(n); else @@ -412,7 +412,7 @@ H5FD__mirror_xmit_decode_uint8(uint8_t *out, const unsigned char *_buf) HDassert(_buf && out); - HDmemcpy(out, _buf, sizeof(uint8_t)); + H5MM_memcpy(out, _buf, sizeof(uint8_t)); return 1; /* number of bytes eaten */ } /* end H5FD__mirror_xmit_decode_uint8() */ @@ -439,7 +439,7 @@ H5FD__mirror_xmit_encode_uint16(unsigned char *_dest, uint16_t v) HDassert(_dest); n = (uint16_t)HDhtons(v); - HDmemcpy(_dest, &n, sizeof(n)); + H5MM_memcpy(_dest, &n, sizeof(n)); return 2; } /* end H5FD__mirror_xmit_encode_uint16() */ @@ -466,7 +466,7 @@ H5FD__mirror_xmit_encode_uint32(unsigned char *_dest, uint32_t v) HDassert(_dest); n = (uint32_t)HDhtonl(v); - HDmemcpy(_dest, &n, sizeof(n)); + H5MM_memcpy(_dest, &n, sizeof(n)); return 4; } /* end H5FD__mirror_xmit_encode_uint32() */ @@ -494,7 +494,7 @@ H5FD__mirror_xmit_encode_uint64(unsigned char *_dest, uint64_t v) if (TRUE == is_host_little_endian()) n = BSWAP_64(v); - HDmemcpy(_dest, &n, sizeof(n)); + H5MM_memcpy(_dest, &n, sizeof(n)); return 8; } /* H5FD__mirror_xmit_encode_uint64() */ @@ -519,7 +519,7 @@ H5FD__mirror_xmit_encode_uint8(unsigned char *dest, uint8_t v) HDassert(dest); - HDmemcpy(dest, &v, sizeof(v)); + H5MM_memcpy(dest, &v, sizeof(v)); return 1; } /* end H5FD__mirror_xmit_encode_uint8() */ @@ -1188,7 +1188,7 @@ H5FD__mirror_fapl_get(H5FD_t *_file) if (NULL == fa) HGOTO_ERROR(H5E_VFL, H5E_CANTALLOC, NULL, "calloc failed"); - HDmemcpy(fa, &(file->fa), sizeof(H5FD_mirror_fapl_t)); + H5MM_memcpy(fa, &(file->fa), sizeof(H5FD_mirror_fapl_t)); ret_value = fa; @@ -1224,7 +1224,7 @@ H5FD__mirror_fapl_copy(const void *_old_fa) if (new_fa == NULL) HGOTO_ERROR(H5E_VFL, H5E_CANTALLOC, NULL, "memory allocation failed"); - HDmemcpy(new_fa, old_fa, sizeof(H5FD_mirror_fapl_t)); + H5MM_memcpy(new_fa, old_fa, sizeof(H5FD_mirror_fapl_t)); ret_value = new_fa; done: @@ -1298,7 +1298,7 @@ H5Pget_fapl_mirror(hid_t fapl_id, H5FD_mirror_fapl_t *fa_out) HDassert(fa->magic == H5FD_MIRROR_FAPL_MAGIC); /* sanity check */ - HDmemcpy(fa_out, fa, sizeof(H5FD_mirror_fapl_t)); + H5MM_memcpy(fa_out, fa, sizeof(H5FD_mirror_fapl_t)); done: FUNC_LEAVE_API(ret_value); diff --git a/src/H5FDros3.c b/src/H5FDros3.c index cc27fd0..a557f1d 100644 --- a/src/H5FDros3.c +++ b/src/H5FDros3.c @@ -500,7 +500,7 @@ H5Pget_fapl_ros3(hid_t fapl_id, H5FD_ros3_fapl_t *fa_out) HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "bad VFL driver info") /* Copy the ros3 fapl data out */ - HDmemcpy(fa_out, fa, sizeof(H5FD_ros3_fapl_t)); + H5MM_memcpy(fa_out, fa, sizeof(H5FD_ros3_fapl_t)); done: FUNC_LEAVE_API(ret_value) @@ -535,7 +535,7 @@ H5FD__ros3_fapl_get(H5FD_t *_file) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Copy the fields of the structure */ - HDmemcpy(fa, &(file->fa), sizeof(H5FD_ros3_fapl_t)); + H5MM_memcpy(fa, &(file->fa), sizeof(H5FD_ros3_fapl_t)); /* Set return value */ ret_value = fa; @@ -575,7 +575,7 @@ H5FD__ros3_fapl_copy(const void *_old_fa) if (new_fa == NULL) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed"); - HDmemcpy(new_fa, old_fa, sizeof(H5FD_ros3_fapl_t)); + H5MM_memcpy(new_fa, old_fa, sizeof(H5FD_ros3_fapl_t)); ret_value = new_fa; done: @@ -768,7 +768,7 @@ H5FD__ros3_open(const char *url, unsigned flags, hid_t fapl_id, haddr_t maxaddr) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "unable to allocate file struct") file->s3r_handle = handle; - HDmemcpy(&(file->fa), &fa, sizeof(H5FD_ros3_fapl_t)); + H5MM_memcpy(&(file->fa), &fa, sizeof(H5FD_ros3_fapl_t)); #if ROS3_STATS if (FAIL == ros3_reset_stats(file)) diff --git a/src/H5FDs3comms.c b/src/H5FDs3comms.c index 92921ad..ac58f67 100644 --- a/src/H5FDs3comms.c +++ b/src/H5FDs3comms.c @@ -144,7 +144,7 @@ curlwritecallback(char *ptr, size_t size, size_t nmemb, void *userdata) return written; if (size > 0) { - HDmemcpy(&(sds->data[sds->size]), ptr, product); + H5MM_memcpy(&(sds->data[sds->size]), ptr, product); sds->size += product; written = product; } @@ -263,12 +263,12 @@ H5FD_s3comms_hrb_node_set(hrb_node_t **L, const char *name, const char *value) namecpy = (char *)H5MM_malloc(sizeof(char) * (namelen + 1)); if (namecpy == NULL) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "cannot make space for name copy."); - HDmemcpy(namecpy, name, (namelen + 1)); + H5MM_memcpy(namecpy, name, (namelen + 1)); valuecpy = (char *)H5MM_malloc(sizeof(char) * (valuelen + 1)); if (valuecpy == NULL) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "cannot make space for value copy."); - HDmemcpy(valuecpy, value, (valuelen + 1)); + H5MM_memcpy(valuecpy, value, (valuelen + 1)); nvcat = (char *)H5MM_malloc(sizeof(char) * catwrite); if (nvcat == NULL) @@ -701,14 +701,14 @@ H5FD_s3comms_hrb_init_request(const char *_verb, const char *_resource, const ch res = (char *)H5MM_malloc(sizeof(char) * (reslen + 1)); if (res == NULL) HGOTO_ERROR(H5E_ARGS, H5E_CANTALLOC, NULL, "no space for resource string"); - HDmemcpy(res, _resource, (reslen + 1)); + H5MM_memcpy(res, _resource, (reslen + 1)); } else { res = (char *)H5MM_malloc(sizeof(char) * (reslen + 2)); if (res == NULL) HGOTO_ERROR(H5E_ARGS, H5E_CANTALLOC, NULL, "no space for resource string"); *res = '/'; - HDmemcpy((&res[1]), _resource, (reslen + 1)); + H5MM_memcpy((&res[1]), _resource, (reslen + 1)); HDassert((reslen + 1) == HDstrlen(res)); } /* end if (else resource string not starting with '/') */ @@ -910,7 +910,7 @@ H5FD_s3comms_s3r_getsize(s3r_t *handle) handle->httpverb = (char *)H5MM_malloc(sizeof(char) * 16); if (handle->httpverb == NULL) HGOTO_ERROR(H5E_ARGS, H5E_CANTALLOC, FAIL, "unable to allocate space for S3 request HTTP verb"); - HDmemcpy(handle->httpverb, "HEAD", 5); + H5MM_memcpy(handle->httpverb, "HEAD", 5); headerresponse = (char *)H5MM_malloc(sizeof(char) * CURL_MAX_HTTP_HEADER); if (headerresponse == NULL) @@ -1078,19 +1078,19 @@ H5FD_s3comms_s3r_open(const char *url, const char *region, const char *id, const handle->region = (char *)H5MM_malloc(sizeof(char) * tmplen); if (handle->region == NULL) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "could not malloc space for handle region copy."); - HDmemcpy(handle->region, region, tmplen); + H5MM_memcpy(handle->region, region, tmplen); tmplen = HDstrlen(id) + 1; handle->secret_id = (char *)H5MM_malloc(sizeof(char) * tmplen); if (handle->secret_id == NULL) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "could not malloc space for handle ID copy."); - HDmemcpy(handle->secret_id, id, tmplen); + H5MM_memcpy(handle->secret_id, id, tmplen); tmplen = SHA256_DIGEST_LENGTH; handle->signing_key = (unsigned char *)H5MM_malloc(sizeof(unsigned char) * tmplen); if (handle->signing_key == NULL) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "could not malloc space for handle key copy."); - HDmemcpy(handle->signing_key, signing_key, tmplen); + H5MM_memcpy(handle->signing_key, signing_key, tmplen); } /* if authentication information provided */ /************************ @@ -1138,7 +1138,7 @@ H5FD_s3comms_s3r_open(const char *url, const char *region, const char *id, const *********************/ HDassert(handle->httpverb != NULL); - HDmemcpy(handle->httpverb, "GET", 4); + H5MM_memcpy(handle->httpverb, "GET", 4); ret_value = handle; @@ -2150,7 +2150,7 @@ H5FD_s3comms_nlowercase(char *dest, const char *s, size_t len) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "destination cannot be null."); if (len > 0) { - HDmemcpy(dest, s, len); + H5MM_memcpy(dest, s, len); do { len--; dest[len] = (char)HDtolower((int)dest[len]); @@ -2686,14 +2686,14 @@ H5FD_s3comms_tostringtosign(char *dest, const char *req, const char *now, const if (ret <= 0 || ret >= 127) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "problem adding day and region to string") - HDmemcpy((dest + d), "AWS4-HMAC-SHA256\n", 17); + H5MM_memcpy((dest + d), "AWS4-HMAC-SHA256\n", 17); d = 17; - HDmemcpy((dest + d), now, HDstrlen(now)); + H5MM_memcpy((dest + d), now, HDstrlen(now)); d += HDstrlen(now); dest[d++] = '\n'; - HDmemcpy((dest + d), tmp, HDstrlen(tmp)); + H5MM_memcpy((dest + d), tmp, HDstrlen(tmp)); d += HDstrlen(tmp); dest[d++] = '\n'; @@ -2777,7 +2777,7 @@ H5FD_s3comms_trim(char *dest, char *s, size_t s_len, size_t *n_written) s_len++; /* write output into dest */ - HDmemcpy(dest, s, s_len); + H5MM_memcpy(dest, s, s_len); } } diff --git a/src/H5FDsplitter.c b/src/H5FDsplitter.c index 698ae7e..6ecafe0 100644 --- a/src/H5FDsplitter.c +++ b/src/H5FDsplitter.c @@ -585,7 +585,7 @@ H5FD__splitter_fapl_copy(const void *_old_fa) if (NULL == new_fa_ptr) HGOTO_ERROR(H5E_VFL, H5E_CANTALLOC, NULL, "unable to allocate log file FAPL") - HDmemcpy(new_fa_ptr, old_fa_ptr, sizeof(H5FD_splitter_fapl_t)); + H5MM_memcpy(new_fa_ptr, old_fa_ptr, sizeof(H5FD_splitter_fapl_t)); HDstrncpy(new_fa_ptr->wo_path, old_fa_ptr->wo_path, H5FD_SPLITTER_PATH_MAX); HDstrncpy(new_fa_ptr->log_file_path, old_fa_ptr->log_file_path, H5FD_SPLITTER_PATH_MAX); @@ -1300,14 +1300,14 @@ H5FD__splitter_log_error(const H5FD_splitter_t *file, const char *atfunc, const char * s; size = HDstrlen(atfunc) + HDstrlen(msg) + 3; /* ':', ' ', '\n' */ - s = (char *)HDmalloc(sizeof(char) * (size + 1)); + s = (char *)H5MM_malloc(sizeof(char) * (size + 1)); if (NULL == s) ret_value = FAIL; else if (size < (size_t)HDsnprintf(s, size + 1, "%s: %s\n", atfunc, msg)) ret_value = FAIL; else if (size != HDfwrite(s, 1, size, file->logfp)) ret_value = FAIL; - HDfree(s); + H5MM_free(s); } FUNC_LEAVE_NOAPI(ret_value) diff --git a/src/H5Tref.c b/src/H5Tref.c index ccb5232..c71724f 100644 --- a/src/H5Tref.c +++ b/src/H5Tref.c @@ -513,7 +513,7 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, s /* Memory-to-memory conversion to support vlen conversion */ if (NULL == dst_file) { - HDmemcpy(dst_buf, src_buf, dst_size); + H5MM_memcpy(dst_buf, src_buf, dst_size); HGOTO_DONE(ret_value); } @@ -602,7 +602,7 @@ H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size /* Memory-to-memory conversion to support vlen conversion */ if (NULL == src_file) { - HDmemcpy(dst_buf, src_buf, src_size); + H5MM_memcpy(dst_buf, src_buf, src_size); HGOTO_DONE(ret_value); } diff --git a/src/H5mpi.c b/src/H5mpi.c index c1f9132..613a4bf 100644 --- a/src/H5mpi.c +++ b/src/H5mpi.c @@ -25,7 +25,7 @@ /****************/ /* Local Macros */ /****************/ -#define TWO_GIG_LIMIT (1 << 31) +#define TWO_GIG_LIMIT INT32_MAX #ifndef H5_MAX_MPI_COUNT #define H5_MAX_MPI_COUNT (1 << 30) #endif @@ -33,7 +33,7 @@ /*******************/ /* Local Variables */ /*******************/ -static hsize_t bigio_count = H5_MAX_MPI_COUNT; +static hsize_t bigio_count_g = H5_MAX_MPI_COUNT; /*------------------------------------------------------------------------- * Function: H5_mpi_set_bigio_count @@ -42,7 +42,7 @@ static hsize_t bigio_count = H5_MAX_MPI_COUNT; * when we utilize derived datatypes. This is of * particular interest for allowing nightly testing * - * Return: The current/previous value of bigio_count. + * Return: The current/previous value of bigio_count_g. * * Programmer: Richard Warren, March 10, 2017 * @@ -51,10 +51,10 @@ static hsize_t bigio_count = H5_MAX_MPI_COUNT; hsize_t H5_mpi_set_bigio_count(hsize_t new_count) { - hsize_t orig_count = bigio_count; + hsize_t orig_count = bigio_count_g; if ((new_count > 0) && (new_count < (hsize_t)TWO_GIG_LIMIT)) { - bigio_count = new_count; + bigio_count_g = new_count; } return orig_count; } /* end H5_mpi_set_bigio_count() */ @@ -63,9 +63,9 @@ H5_mpi_set_bigio_count(hsize_t new_count) * Function: H5_mpi_get_bigio_count * * Purpose: Allow other HDF5 library functions to access - * the current value for bigio_count. + * the current value for bigio_count_g. * - * Return: The current/previous value of bigio_count. + * Return: The current/previous value of bigio_count_g. * * Programmer: Richard Warren, October 7, 2019 * @@ -74,7 +74,7 @@ H5_mpi_set_bigio_count(hsize_t new_count) hsize_t H5_mpi_get_bigio_count(void) { - return bigio_count; + return bigio_count_g; } /*------------------------------------------------------------------------- @@ -471,8 +471,8 @@ H5_mpio_create_large_type(hsize_t num_elements, MPI_Aint stride_bytes, MPI_Datat FUNC_ENTER_NOAPI(FAIL) /* Calculate how many Big MPI datatypes are needed to represent the buffer */ - num_big_types = (int)(num_elements / bigio_count); - leftover = (hsize_t)num_elements - (hsize_t)num_big_types * bigio_count; + num_big_types = (int)(num_elements / bigio_count_g); + leftover = (hsize_t)num_elements - (hsize_t)num_big_types * bigio_count_g; H5_CHECKED_ASSIGN(remaining_bytes, int, leftover, hsize_t); /* Create a contiguous datatype of size equal to the largest @@ -481,11 +481,11 @@ H5_mpio_create_large_type(hsize_t num_elements, MPI_Aint stride_bytes, MPI_Datat * use type_hvector to create the type with the displacement provided */ if (0 == stride_bytes) { - if (MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)bigio_count, old_type, &inner_type))) + if (MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)bigio_count_g, old_type, &inner_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code) } /* end if */ else if (MPI_SUCCESS != - (mpi_code = MPI_Type_create_hvector((int)bigio_count, 1, stride_bytes, old_type, &inner_type))) + (mpi_code = MPI_Type_create_hvector((int)bigio_count_g, 1, stride_bytes, old_type, &inner_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hvector failed", mpi_code) /* Create a contiguous datatype of the buffer (minus the remaining < 2GB part) @@ -510,7 +510,7 @@ H5_mpio_create_large_type(hsize_t num_elements, MPI_Aint stride_bytes, MPI_Datat HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code) } /* end if */ else if (MPI_SUCCESS != (mpi_code = MPI_Type_create_hvector( - (int)(num_elements - (hsize_t)num_big_types * bigio_count), 1, + (int)(num_elements - (hsize_t)num_big_types * bigio_count_g), 1, stride_bytes, old_type, &leftover_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hvector failed", mpi_code) @@ -529,7 +529,7 @@ H5_mpio_create_large_type(hsize_t num_elements, MPI_Aint stride_bytes, MPI_Datat block_len[0] = 1; block_len[1] = 1; disp[0] = 0; - disp[1] = (old_extent + stride_bytes) * num_big_types * (MPI_Aint)bigio_count; + disp[1] = (old_extent + stride_bytes) * num_big_types * (MPI_Aint)bigio_count_g; if (MPI_SUCCESS != (mpi_code = MPI_Type_create_struct(2, block_len, disp, type, new_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_struct failed", mpi_code) |