diff options
261 files changed, 6851 insertions, 5651 deletions
diff --git a/.gitattributes b/.gitattributes index de68733..1ca4739 100644 --- a/.gitattributes +++ b/.gitattributes @@ -192,12 +192,12 @@ java/examples/testfiles/examples.intro.H5_CreateGroup.txt -text java/examples/testfiles/examples.intro.H5_CreateGroupAbsoluteRelative.txt -text java/examples/testfiles/examples.intro.H5_CreateGroupDataset.txt -text java/examples/testfiles/examples.intro.H5_ReadWrite.txt -text -java/lib/ext/slf4j-nop-1.7.5.jar -text svneol=unset#application/zip -java/lib/ext/slf4j-simple-1.7.5.jar -text svneol=unset#application/zip +java/lib/ext/slf4j-nop-1.7.25.jar -text svneol=unset#application/zip +java/lib/ext/slf4j-simple-1.7.25.jar -text svneol=unset#application/zip java/lib/hamcrest-core.jar -text svneol=unset#application/java-archive java/lib/junit.jar -text svneol=unset#application/java-archive java/lib/simplelogger.properties -text -java/lib/slf4j-api-1.7.5.jar -text svneol=unset#application/zip +java/lib/slf4j-api-1.7.25.jar -text svneol=unset#application/zip java/src/CMakeLists.txt -text java/src/Makefile.am -text java/src/hdf/CMakeLists.txt -text diff --git a/CMakeLists.txt b/CMakeLists.txt index f24a957..b0640b9 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -195,9 +195,9 @@ set (HDF5_JAVA_JNI_SRC_DIR ${HDF5_SOURCE_DIR}/java/src/jni) set (HDF5_JAVA_HDF5_SRC_DIR ${HDF5_SOURCE_DIR}/java/src/hdf) set (HDF5_JAVA_TEST_SRC_DIR ${HDF5_SOURCE_DIR}/java/test) set (HDF5_JAVA_LIB_DIR ${HDF5_SOURCE_DIR}/java/lib) -set (HDF5_JAVA_LOGGING_JAR ${HDF5_SOURCE_DIR}/java/lib/slf4j-api-1.7.5.jar) -set (HDF5_JAVA_LOGGING_NOP_JAR ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-nop-1.7.5.jar) -set (HDF5_JAVA_LOGGING_SIMPLE_JAR ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-simple-1.7.5.jar) +set (HDF5_JAVA_LOGGING_JAR ${HDF5_SOURCE_DIR}/java/lib/slf4j-api-1.7.25.jar) +set (HDF5_JAVA_LOGGING_NOP_JAR ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-nop-1.7.25.jar) +set (HDF5_JAVA_LOGGING_SIMPLE_JAR ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-simple-1.7.25.jar) #----------------------------------------------------------------------------- # parse the full version number from H5public.h and include in H5_VERS_INFO @@ -752,6 +752,7 @@ ./src/H5Ocont.c ./src/H5Ocopy.c ./src/H5Odbg.c +./src/H5Odeprec.c ./src/H5Odrvinfo.c ./src/H5Odtype.c ./src/H5Oefl.c @@ -940,6 +941,7 @@ ./test/cross_read.c ./test/dangle.c ./test/deflate.h5 +./test/direct_chunk.c ./test/dsets.c ./test/dt_arith.c ./test/dtypes.c @@ -2588,6 +2590,7 @@ ./tools/test/perform/build_h5perf_alone.sh ./tools/test/perform/build_h5perf_serial_alone.sh ./tools/test/perform/chunk.c +./tools/test/perform/direct_write_perf.c ./tools/test/perform/gen_report.pl ./tools/test/perform/iopipe.c ./tools/test/perform/overhead.c @@ -2665,7 +2668,6 @@ ./hl/test/COPYING ./hl/test/H5srcdir_str.h.in ./hl/test/Makefile.am -./hl/test/dectris_hl_perf.c ./hl/test/dsdata.txt ./hl/test/dslat.txt ./hl/test/dslon.txt @@ -2684,8 +2686,8 @@ ./hl/test/test_ds_be.h5 ./hl/test/test_ds_le.h5 ./hl/test/test_dset_append.c -./hl/test/test_dset_opt.c ./hl/test/test_file_image.c +./hl/test/test_h5do_compat.c ./hl/test/test_image.c ./hl/test/test_ld.c ./hl/test/test_ld.h5 @@ -3048,9 +3050,42 @@ ./java/test/Makefile.am ./java/test/CMakeLists.txt ./java/test/junit.sh.in -./java/test/JUnit-interface.txt -./java/test/JUnit-unit.txt -./java/test/JUnit-interface.ert +./java/test/testfiles/JUnit-TestH5.txt +./java/test/testfiles/JUnit-TestH5A.txt +./java/test/testfiles/JUnit-TestH5Dparams.txt +./java/test/testfiles/JUnit-TestH5D.txt +./java/test/testfiles/JUnit-TestH5Dplist.txt +./java/test/testfiles/JUnit-TestH5E.txt +./java/test/testfiles/JUnit-TestH5Edefault.txt +./java/test/testfiles/JUnit-TestH5Eparams.txt +./java/test/testfiles/JUnit-TestH5Eregister.txt +./java/test/testfiles/JUnit-TestH5Fparams.txt +./java/test/testfiles/JUnit-TestH5Fbasic.txt +./java/test/testfiles/JUnit-TestH5F.txt +./java/test/testfiles/JUnit-TestH5Fswmr.txt +./java/test/testfiles/JUnit-TestH5Gbasic.txt +./java/test/testfiles/JUnit-TestH5G.txt +./java/test/testfiles/JUnit-TestH5Giterate.txt +./java/test/testfiles/JUnit-TestH5Lparams.txt +./java/test/testfiles/JUnit-TestH5Lbasic.txt +./java/test/testfiles/JUnit-TestH5Lcreate.txt +./java/test/testfiles/JUnit-TestH5Oparams.txt +./java/test/testfiles/JUnit-TestH5Obasic.txt +./java/test/testfiles/JUnit-TestH5Ocreate.txt +./java/test/testfiles/JUnit-TestH5Ocopy.txt +./java/test/testfiles/JUnit-TestH5P.txt +./java/test/testfiles/JUnit-TestH5PData.txt +./java/test/testfiles/JUnit-TestH5Pfapl.txt +./java/test/testfiles/JUnit-TestH5Plist.txt +./java/test/testfiles/JUnit-TestH5Pvirtual.txt +./java/test/testfiles/JUnit-TestH5PL.txt +./java/test/testfiles/JUnit-TestH5R.txt +./java/test/testfiles/JUnit-TestH5Sbasic.txt +./java/test/testfiles/JUnit-TestH5S.txt +./java/test/testfiles/JUnit-TestH5Tparams.txt +./java/test/testfiles/JUnit-TestH5Tbasic.txt +./java/test/testfiles/JUnit-TestH5T.txt +./java/test/testfiles/JUnit-TestH5Z.txt ./java/test/h5ex_g_iterate.orig ./java/test/TestH5.java ./java/test/TestH5A.java @@ -3089,14 +3124,13 @@ ./java/test/TestH5T.java ./java/test/TestH5Z.java ./java/test/TestAll.java -./java/test/TestUnit.java ./java/lib/hamcrest-core.jar ./java/lib/junit.jar ./java/lib/simplelogger.properties -./java/lib/slf4j-api-1.7.5.jar -./java/lib/ext/slf4j-nop-1.7.5.jar -./java/lib/ext/slf4j-simple-1.7.5.jar +./java/lib/slf4j-api-1.7.25.jar +./java/lib/ext/slf4j-nop-1.7.25.jar +./java/lib/ext/slf4j-simple-1.7.25.jar # CMake-specific Files ./config/cmake/cacheinit.cmake diff --git a/c++/examples/CMakeLists.txt b/c++/examples/CMakeLists.txt index 5eef265..d3a18f2 100644 --- a/c++/examples/CMakeLists.txt +++ b/c++/examples/CMakeLists.txt @@ -34,7 +34,7 @@ set (tutr_examples foreach (example ${examples}) add_executable (cpp_ex_${example} ${HDF5_CPP_EXAMPLES_SOURCE_DIR}/${example}.cpp) - target_include_directories(cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (cpp_ex_${example} STATIC) target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp) @@ -42,7 +42,7 @@ endforeach () foreach (example ${tutr_examples}) add_executable (cpp_ex_${example} ${HDF5_CPP_EXAMPLES_SOURCE_DIR}/${example}.cpp) - target_include_directories(cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (cpp_ex_${example} STATIC) target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp) diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt index cf7a8a5..27b71b0 100644 --- a/c++/src/CMakeLists.txt +++ b/c++/src/CMakeLists.txt @@ -84,7 +84,7 @@ set (CPP_HDRS add_library (${HDF5_CPP_LIB_TARGET} STATIC ${CPP_SOURCES} ${CPP_HDRS}) target_include_directories(${HDF5_CPP_LIB_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) target_compile_definitions(${HDF5_CPP_LIB_TARGET} @@ -100,7 +100,7 @@ set (install_targets ${HDF5_CPP_LIB_TARGET}) if (BUILD_SHARED_LIBS) add_library (${HDF5_CPP_LIBSH_TARGET} SHARED ${CPP_SOURCES} ${CPP_HDRS}) target_include_directories(${HDF5_CPP_LIBSH_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) target_compile_definitions(${HDF5_CPP_LIBSH_TARGET} diff --git a/c++/src/H5Location.cpp b/c++/src/H5Location.cpp index 2dceb6e..8df7467 100644 --- a/c++/src/H5Location.cpp +++ b/c++/src/H5Location.cpp @@ -1827,7 +1827,7 @@ H5O_type_t H5Location::childObjType(const char* objname) const H5O_type_t objtype = H5O_TYPE_UNKNOWN; // Use C API to get information of the object - herr_t ret_value = H5Oget_info_by_name(getId(), objname, &objinfo, H5P_DEFAULT); + herr_t ret_value = H5Oget_info_by_name2(getId(), objname, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT); // Throw exception if C API returns failure if (ret_value < 0) @@ -1902,7 +1902,7 @@ H5O_type_t H5Location::childObjType(hsize_t index, H5_index_t index_type, H5_ite H5O_type_t objtype = H5O_TYPE_UNKNOWN; // Use C API to get information of the object - ret_value = H5Oget_info_by_idx(getId(), objname, index_type, order, index, &objinfo, H5P_DEFAULT); + ret_value = H5Oget_info_by_idx2(getId(), objname, index_type, order, index, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT); // Throw exception if C API returns failure if (ret_value < 0) @@ -1944,7 +1944,7 @@ unsigned H5Location::childObjVersion(const char* objname) const unsigned version = 0; // Use C API to get information of the object - herr_t ret_value = H5Oget_info_by_name(getId(), objname, &objinfo, H5P_DEFAULT); + herr_t ret_value = H5Oget_info_by_name2(getId(), objname, &objinfo, H5O_INFO_HDR, H5P_DEFAULT); // Throw exception if C API returns failure if (ret_value < 0) diff --git a/c++/src/H5Object.cpp b/c++/src/H5Object.cpp index 5d102d7..b95e222 100644 --- a/c++/src/H5Object.cpp +++ b/c++/src/H5Object.cpp @@ -244,7 +244,7 @@ unsigned H5Object::objVersion() const unsigned version = 0; // Use C API to get information of the object - herr_t ret_value = H5Oget_info(getId(), &objinfo); + herr_t ret_value = H5Oget_info2(getId(), &objinfo, H5O_INFO_HDR); // Throw exception if C API returns failure if (ret_value < 0) @@ -270,7 +270,7 @@ int H5Object::getNumAttrs() const { H5O_info_t oinfo; /* Object info */ - if(H5Oget_info(getId(), &oinfo) < 0) + if(H5Oget_info2(getId(), &oinfo, H5O_INFO_NUM_ATTRS) < 0) throw AttributeIException(inMemFunc("getNumAttrs"), "H5Oget_info failed"); else return(static_cast<int>(oinfo.num_attrs)); diff --git a/c++/test/CMakeLists.txt b/c++/test/CMakeLists.txt index 33849a9..8e2d685 100644 --- a/c++/test/CMakeLists.txt +++ b/c++/test/CMakeLists.txt @@ -38,7 +38,7 @@ set (srcdir ${CMAKE_CURRENT_SOURCE_DIR}) configure_file (${HDF5_CPP_TEST_SOURCE_DIR}/H5srcdir_str.h.in H5srcdir_str.h @ONLY) add_executable (cpp_testhdf5 ${CPP_TEST_SOURCES} ) -target_include_directories(cpp_testhdf5 PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR}") +target_include_directories(cpp_testhdf5 PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") target_compile_definitions(cpp_testhdf5 PRIVATE $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:MPICH_SKIP_MPICXX;MPICH_IGNORE_CXX_SEEK># Parallel/MPI, prevent spurious cpp/cxx warnings ) diff --git a/config/cmake/ConversionTests.c b/config/cmake/ConversionTests.c index 002bc88..321d879 100644 --- a/config/cmake/ConversionTests.c +++ b/config/cmake/ConversionTests.c @@ -25,7 +25,7 @@ #include <string.h> #include <stdlib.h> -int main(void) HDF_NO_UBSAN +int HDF_NO_UBSAN main(void) { long double ld = 20041683600089727.779961L; long ll; @@ -86,7 +86,7 @@ done: #include <string.h> #include <stdlib.h> -int main(void) HDF_NO_UBSAN +int HDF_NO_UBSAN main(void) { long double ld; long ll; @@ -149,7 +149,7 @@ done: #include <string.h> #include <stdlib.h> -int main(void) HDF_NO_UBSAN +int HDF_NO_UBSAN main(void) { long double ld = 20041683600089727.779961L; long long ll; @@ -192,7 +192,7 @@ done: #include <string.h> #include <stdlib.h> -int main(void) HDF_NO_UBSAN +int HDF_NO_UBSAN main(void) { long double ld; long long ll; @@ -253,8 +253,8 @@ int FC_DUMMY_MAIN() { return 1;} #endif #endif -int -main () HDF_NO_UBSAN +int HDF_NO_UBSAN +main () { char *chp = "beefs"; diff --git a/config/cmake/HDF5Macros.cmake b/config/cmake/HDF5Macros.cmake index 2bdf38f..6c203e2 100644 --- a/config/cmake/HDF5Macros.cmake +++ b/config/cmake/HDF5Macros.cmake @@ -20,11 +20,11 @@ macro (H5_SET_LIB_OPTIONS libtarget libname libtype libpackage) else () set (LIBHDF_VERSION ${HDF5_${libpackage}_PACKAGE_SOVERSION_MAJOR}) endif () - set_target_properties (${libtarget} PROPERTIES VERSION ${LIBHDF_VERSION}) + set_target_properties (${libtarget} PROPERTIES VERSION ${PACKAGE_SOVERSION}) if (WIN32) - set (${LIB_OUT_NAME} "${LIB_OUT_NAME}-${PACKAGE_SOVERSION}") + set (${LIB_OUT_NAME} "${LIB_OUT_NAME}-${LIBHDF_VERSION}") else () - set_target_properties (${libtarget} PROPERTIES SOVERSION ${PACKAGE_SOVERSION}) + set_target_properties (${libtarget} PROPERTIES SOVERSION ${LIBHDF_VERSION}) endif () endif () HDF_SET_LIB_OPTIONS (${libtarget} ${LIB_OUT_NAME} ${libtype}) diff --git a/config/cmake/README.txt.cmake.in b/config/cmake/README.txt.cmake.in index ceeda49..be6ddc1 100644 --- a/config/cmake/README.txt.cmake.in +++ b/config/cmake/README.txt.cmake.in @@ -62,9 +62,6 @@ For more information see USING_CMake_Examples.txt in the install folder. =========================================================================== Documentation for this release can be found at the following URL: - http://www.hdfgroup.org/HDF5/doc/. - -See the HDF5 home page for further details: - http://hdfgroup.org/HDF5/ + https://portal.hdfgroup.org/display/support Bugs should be reported to help@hdfgroup.org. diff --git a/config/cmake/hdf5-config.cmake.in b/config/cmake/hdf5-config.cmake.in index 574f541..e687a58 100644 --- a/config/cmake/hdf5-config.cmake.in +++ b/config/cmake/hdf5-config.cmake.in @@ -61,8 +61,8 @@ endif () if (${HDF5_PACKAGE_NAME}_BUILD_JAVA) set (${HDF5_PACKAGE_NAME}_JAVA_INCLUDE_DIRS @PACKAGE_CURRENT_BUILD_DIR@/lib/jarhdf5-@HDF5_VERSION_STRING@.jar - @PACKAGE_CURRENT_BUILD_DIR@/lib/slf4j-api-1.7.5.jar - @PACKAGE_CURRENT_BUILD_DIR@/lib/slf4j-nop-1.7.5.jar + @PACKAGE_CURRENT_BUILD_DIR@/lib/slf4j-api-1.7.25.jar + @PACKAGE_CURRENT_BUILD_DIR@/lib/slf4j-nop-1.7.25.jar ) set (${HDF5_PACKAGE_NAME}_JAVA_LIBRARY "@PACKAGE_CURRENT_BUILD_DIR@/lib") set (${HDF5_PACKAGE_NAME}_JAVA_LIBRARIES "${${HDF5_PACKAGE_NAME}_JAVA_LIBRARY}") diff --git a/configure.ac b/configure.ac index c68caab..1de69c8 100644 --- a/configure.ac +++ b/configure.ac @@ -1954,12 +1954,12 @@ AC_DEFINE_UNQUOTED([PRINTF_LL_WIDTH], ["$hdf5_cv_printf_ll"], ## around to help people migrate to 1.10.x and newer versions. ## AC_ARG_ENABLE([debug], - [AS_HELP_STRING([--enable-debug], [DEPRECATED: use --enable-build-mode=debug])], - [AC_MSG_ERROR([--enable-debug is deprecated, use --enable-build-mode=debug instead.])]) + [AS_HELP_STRING([--enable-debug], [OPTION CHANGE: use --enable-build-mode=debug])], + [AC_MSG_ERROR([--enable-debug is no longer supported, use --enable-build-mode=debug instead.])]) AC_ARG_ENABLE([production], - [AS_HELP_STRING([--enable-production], [DEPRECATED: use --enable-build-mode=production])], - [AC_MSG_ERROR([--enable-production is deprecated, use --enable-build-mode=production instead.])]) + [AS_HELP_STRING([--enable-production], [OPTION CHANGE: use --enable-build-mode=production])], + [AC_MSG_ERROR([--enable-production is no longer supported, use --enable-build-mode=production instead.])]) ## ---------------------------------------------------------------------- diff --git a/examples/CMakeLists.txt b/examples/CMakeLists.txt index 48f85f6..2239d64 100644 --- a/examples/CMakeLists.txt +++ b/examples/CMakeLists.txt @@ -41,13 +41,13 @@ set (examples foreach (example ${examples}) add_executable (${example} ${HDF5_EXAMPLES_SOURCE_DIR}/${example}.c) - target_include_directories(${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${example} STATIC) target_link_libraries (${example} PRIVATE ${HDF5_LIB_TARGET}) set_target_properties (${example} PROPERTIES FOLDER examples) if (BUILD_SHARED_LIBS) add_executable (${example}-shared ${HDF5_EXAMPLES_SOURCE_DIR}/${example}.c) - target_include_directories(${example}-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(${example}-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${example}-shared SHARED) target_link_libraries (${example}-shared PRIVATE ${HDF5_LIBSH_TARGET}) set_target_properties (${example}-shared PROPERTIES FOLDER examples) @@ -56,13 +56,13 @@ endforeach () if (H5_HAVE_PARALLEL) add_executable (ph5example ${HDF5_EXAMPLES_SOURCE_DIR}/ph5example.c) - target_include_directories(ph5example PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(ph5example PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (ph5example STATIC) target_link_libraries (ph5example PRIVATE ${HDF5_LIB_TARGET} ${MPI_C_LIBRARIES}) set_target_properties (ph5example PROPERTIES FOLDER examples) if (BUILD_SHARED_LIBS) add_executable (ph5example-shared ${HDF5_EXAMPLES_SOURCE_DIR}/ph5example.c) - target_include_directories(ph5example-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(ph5example-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (ph5example-shared SHARED) target_link_libraries (ph5example-shared PRIVATE ${HDF5_LIBSH_TARGET} ${MPI_C_LIBRARIES}) set_target_properties (ph5example-shared PROPERTIES FOLDER examples) diff --git a/examples/h5_attribute.c b/examples/h5_attribute.c index 335f9c2..e3b5759 100644 --- a/examples/h5_attribute.c +++ b/examples/h5_attribute.c @@ -189,7 +189,7 @@ main (void) /* * Find string attribute by iterating through all attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_ALL); for(i = 0; i < (unsigned)oinfo.num_attrs; i++) { attr = H5Aopen_by_idx(dataset, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)i, H5P_DEFAULT, H5P_DEFAULT); atype = H5Aget_type(attr); diff --git a/fortran/examples/CMakeLists.txt b/fortran/examples/CMakeLists.txt index cc14651..0c570c6 100644 --- a/fortran/examples/CMakeLists.txt +++ b/fortran/examples/CMakeLists.txt @@ -54,7 +54,7 @@ foreach (example ${examples}) # LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:> # ) if(MSVC) - set_property(TARGET H5_buildiface PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}") + set_property(TARGET f90_ex_${example} PROPERTY LINK_FLAGS "/SUBSYSTEM:CONSOLE ${WIN_LINK_FLAGS}") endif() set_target_properties (f90_ex_${example} PROPERTIES LINKER_LANGUAGE Fortran @@ -69,7 +69,6 @@ foreach (example ${examples}) ) target_compile_options(f90_ex_${example}-shared PRIVATE - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (f90_ex_${example}-shared @@ -129,7 +128,6 @@ foreach (example ${F2003_examples}) ) target_compile_options(f03_ex_${example}-shared PRIVATE - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (f03_ex_${example}-shared @@ -157,7 +155,7 @@ if (H5_HAVE_PARALLEL AND MPI_Fortran_FOUND) add_executable (f90_ex_ph5example ${HDF5_F90_EXAMPLES_SOURCE_DIR}/ph5example.f90) target_include_directories (f90_ex_ph5example PRIVATE - "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static" + "${CMAKE_Fortran_MODULE_DIRECTORY}/static;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_INCLUDE_DIRS}>" ) target_compile_options(f90_ex_ph5example PRIVATE @@ -166,6 +164,7 @@ if (H5_HAVE_PARALLEL AND MPI_Fortran_FOUND) target_link_libraries (f90_ex_ph5example PRIVATE ${HDF5_F90_LIB_TARGET} ${HDF5_LIB_TARGET} + $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_LIBRARIES}> ) # set_property(TARGET f90_ex_ph5example APPEND PROPERTY # LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE"> @@ -185,16 +184,16 @@ if (H5_HAVE_PARALLEL AND MPI_Fortran_FOUND) add_executable (f90_ex_ph5example-shared ${HDF5_F90_EXAMPLES_SOURCE_DIR}/ph5example.f90) target_include_directories (f90_ex_ph5example-shared PRIVATE - "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared" + "${CMAKE_Fortran_MODULE_DIRECTORY}/shared;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_INCLUDE_DIRS}>" ) target_compile_options(f90_ex_ph5example-shared PRIVATE - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (f90_ex_ph5example-shared PRIVATE ${HDF5_F90_LIBSH_TARGET} ${HDF5_LIBSH_TARGET} + $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_Fortran_LIBRARIES}> ) # set_property(TARGET f90_ex_ph5example-shared APPEND PROPERTY # LINK_FLAGS $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:"-SUBSYSTEM:CONSOLE"> diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt index a29fb86..025fab5 100644 --- a/fortran/src/CMakeLists.txt +++ b/fortran/src/CMakeLists.txt @@ -81,7 +81,7 @@ add_executable (H5match_types ${HDF5_F90_BINARY_DIR}/H5fort_type_defines.h ${HDF5_F90_SRC_SOURCE_DIR}/H5match_types.c ) -target_include_directories(H5match_types PRIVATE "${HDF5_BINARY_DIR};${HDF5_SRC_DIR};${HDF5_F90_BINARY_DIR}") +target_include_directories(H5match_types PRIVATE "${HDF5_BINARY_DIR};${HDF5_SRC_DIR};${HDF5_F90_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") add_custom_command ( OUTPUT ${HDF5_F90_BINARY_DIR}/static/H5f90i_gen.h ${HDF5_F90_BINARY_DIR}/static/H5fortran_types.F90 @@ -137,7 +137,7 @@ set (f90CStub_C_SHHDRS add_library (${HDF5_F90_C_LIB_TARGET} STATIC ${f90CStub_C_SOURCES} ${f90CStub_C_HDRS}) target_include_directories(${HDF5_F90_C_LIB_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) TARGET_C_PROPERTIES (${HDF5_F90_C_LIB_TARGET} STATIC) @@ -153,7 +153,7 @@ set (install_targets ${HDF5_F90_C_LIB_TARGET}) if (BUILD_SHARED_LIBS) add_library (${HDF5_F90_C_LIBSH_TARGET} SHARED ${f90CStub_C_SOURCES} ${f90CStub_C_SHHDRS}) target_include_directories(${HDF5_F90_C_LIBSH_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) target_compile_definitions(${HDF5_F90_C_LIBSH_TARGET} @@ -305,7 +305,6 @@ if (BUILD_SHARED_LIBS) "H5_BUILT_AS_DYNAMIC_LIB" PRIVATE $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:BUILD_HDF5_DLL;HDF5F90_WINDOWS> - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (${HDF5_F90_LIBSH_TARGET} diff --git a/fortran/src/H5Af.c b/fortran/src/H5Af.c index 23dd936..31a18fc 100644 --- a/fortran/src/H5Af.c +++ b/fortran/src/H5Af.c @@ -143,7 +143,7 @@ h5aget_num_attrs_c (hid_t_f *obj_id, int_f *attr_num) /* * Call H5Oget_info function. */ - if(H5Oget_info((hid_t)*obj_id, &oinfo) < 0) + if(H5Oget_info2((hid_t)*obj_id, &oinfo, H5O_INFO_NUM_ATTRS) < 0) HGOTO_DONE(FAIL); /* Set number of attributes */ diff --git a/fortran/src/H5Fff.F90 b/fortran/src/H5Fff.F90 index a3bef37..358e421 100644 --- a/fortran/src/H5Fff.F90 +++ b/fortran/src/H5Fff.F90 @@ -42,6 +42,9 @@ MODULE H5F USE H5GLOBAL IMPLICIT NONE + ! Number of objects opened in H5open_f + INTEGER(SIZE_T) :: H5OPEN_NUM_OBJ + CONTAINS !****s* H5F/h5fcreate_f ! @@ -616,9 +619,14 @@ CONTAINS INTEGER(SIZE_T), INTENT(OUT) :: obj_count END FUNCTION h5fget_obj_count_c END INTERFACE - + hdferr = h5fget_obj_count_c(file_id, obj_type, obj_count) + ! Don't include objects created by H5open in the H5F_OBJ_ALL_F count + IF(file_id.EQ.INT(H5F_OBJ_ALL_F,HID_T))THEN + obj_count = obj_count - H5OPEN_NUM_OBJ + ENDIF + END SUBROUTINE h5fget_obj_count_f !****s* H5F/h5fget_obj_ids_f diff --git a/fortran/src/H5Gf.c b/fortran/src/H5Gf.c index b829b20..def67e1 100644 --- a/fortran/src/H5Gf.c +++ b/fortran/src/H5Gf.c @@ -200,7 +200,7 @@ h5gget_obj_info_idx_c(hid_t_f *loc_id, _fcd name, int_f *namelen, int_f *idx, /* Query the object's information */ if(H5Lget_name_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, c_idx, c_obj_name, c_obj_namelen, H5P_DEFAULT) < 0) goto DONE; - if(H5Oget_info_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, c_idx, &oinfo, H5P_DEFAULT) < 0) + if(H5Oget_info_by_idx2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, c_idx, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) goto DONE; /* XXX: Switch from using H5Gget_objtype_by_idx() means that this routine won't diff --git a/fortran/src/H5Of.c b/fortran/src/H5Of.c index 7d065a5..45b7f09 100644 --- a/fortran/src/H5Of.c +++ b/fortran/src/H5Of.c @@ -248,9 +248,9 @@ h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, herr_t func_ret_value; /* H5Linterate return value */ /* - * Call H5Ovisit + * Call H5Ovisit2 */ - func_ret_value = H5Ovisit( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data); + func_ret_value = H5Ovisit2( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, H5O_INFO_ALL); ret_value = (int_f)func_ret_value; @@ -330,8 +330,8 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l /* * Call H5Oinfo_by_name function. */ - if(H5Oget_info_by_name((hid_t)*loc_id, c_name, - &Oinfo, (hid_t)*lapl_id) < 0) + if(H5Oget_info_by_name2((hid_t)*loc_id, c_name, + &Oinfo, H5O_INFO_ALL, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); ret_value = fill_h5o_info_t_f(Oinfo,object_info); @@ -385,8 +385,8 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, /* * Call H5Oinfo_by_idx function. */ - if(H5Oget_info_by_idx((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, - &Oinfo, (hid_t)*lapl_id) < 0) + if(H5Oget_info_by_idx2((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, + &Oinfo, H5O_INFO_ALL, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); ret_value = fill_h5o_info_t_f(Oinfo,object_info); @@ -424,7 +424,7 @@ h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info) /* * Call H5Oinfo_by_name function. */ - if(H5Oget_info((hid_t)*object_id, &Oinfo) < 0) + if(H5Oget_info2((hid_t)*object_id, &Oinfo, H5O_INFO_ALL) < 0) HGOTO_DONE(FAIL); ret_value = fill_h5o_info_t_f(Oinfo,object_info); @@ -532,8 +532,8 @@ h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f /* * Call H5Ovisit */ - func_ret_value = H5Ovisit_by_name( (hid_t)*loc_id, c_object_name, (H5_index_t)*index_type, (H5_iter_order_t)*order, - op, op_data, (hid_t)*lapl_id); + func_ret_value = H5Ovisit_by_name2( (hid_t)*loc_id, c_object_name, (H5_index_t)*index_type, (H5_iter_order_t)*order, + op, op_data, H5O_INFO_ALL, (hid_t)*lapl_id); ret_value = (int_f)func_ret_value; done: diff --git a/fortran/src/H5_ff.F90 b/fortran/src/H5_ff.F90 index db57f03..f63e734 100644 --- a/fortran/src/H5_ff.F90 +++ b/fortran/src/H5_ff.F90 @@ -169,8 +169,10 @@ CONTAINS ! October 13, 2011 ! Fortran90 Interface: SUBROUTINE h5open_f(error) + USE H5F, ONLY : h5fget_obj_count_f, H5OPEN_NUM_OBJ IMPLICIT NONE INTEGER, INTENT(OUT) :: error + INTEGER(SIZE_T) :: H5OPEN_NUM_OBJ_LOC = 0 !***** INTERFACE @@ -612,6 +614,10 @@ CONTAINS H5_SZIP_EC_OM_F = H5LIB_flags(1) H5_SZIP_NN_OM_F = H5LIB_flags(2) + CALL h5fget_obj_count_f(INT(H5F_OBJ_ALL_F,HID_T), H5F_OBJ_ALL_F, H5OPEN_NUM_OBJ_LOC, error) + + H5OPEN_NUM_OBJ = H5OPEN_NUM_OBJ_LOC + END SUBROUTINE h5open_f !****s* H5LIB/h5close_f diff --git a/fortran/src/Makefile.am b/fortran/src/Makefile.am index a863a67..666f6cb 100644 --- a/fortran/src/Makefile.am +++ b/fortran/src/Makefile.am @@ -142,7 +142,7 @@ FORTRAN_API=yes # modules they depend upon are actually made. *sigh* H5f90global.lo: $(srcdir)/H5f90global.F90 H5fortran_types.lo H5_buildiface.lo: $(srcdir)/H5_buildiface.F90 -H5_ff.lo: $(srcdir)/H5_ff.F90 H5f90global.lo +H5_ff.lo: $(srcdir)/H5_ff.F90 H5Fff.lo H5f90global.lo H5Aff.lo: $(srcdir)/H5Aff.F90 H5f90global.lo H5Dff.lo: $(srcdir)/H5Dff.F90 H5f90global.lo H5Eff.lo: $(srcdir)/H5Eff.F90 H5f90global.lo diff --git a/fortran/test/CMakeLists.txt b/fortran/test/CMakeLists.txt index b45154e..b862fcd 100644 --- a/fortran/test/CMakeLists.txt +++ b/fortran/test/CMakeLists.txt @@ -44,7 +44,7 @@ set (MOD_BUILD_DIR ${CMAKE_Fortran_MODULE_DIRECTORY}/static/${HDF_CFG_BUILD_TYPE add_library (${HDF5_F90_C_TEST_LIB_TARGET} STATIC t.c) set_source_files_properties (t.c PROPERTIES LANGUAGE C) target_include_directories(${HDF5_F90_C_TEST_LIB_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) TARGET_C_PROPERTIES (${HDF5_F90_C_TEST_LIB_TARGET} STATIC) @@ -60,7 +60,7 @@ set_target_properties (${HDF5_F90_C_TEST_LIB_TARGET} PROPERTIES if (BUILD_SHARED_LIBS) add_library (${HDF5_F90_C_TEST_LIBSH_TARGET} SHARED t.c) target_include_directories(${HDF5_F90_C_TEST_LIBSH_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) target_compile_definitions(${HDF5_F90_C_TEST_LIBSH_TARGET} @@ -169,7 +169,6 @@ if (BUILD_SHARED_LIBS) "H5_BUILT_AS_DYNAMIC_LIB" PRIVATE $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:BUILD_HDF5_TEST_DLL;HDF5F90_WINDOWS> - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (${HDF5_F90_TEST_LIBSH_TARGET} @@ -271,7 +270,6 @@ if (BUILD_SHARED_LIBS) ) target_compile_options(testhdf5_fortran-shared PRIVATE - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (testhdf5_fortran-shared @@ -347,7 +345,6 @@ if (BUILD_SHARED_LIBS) ) target_compile_options(testhdf5_fortran_1_8-shared PRIVATE - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (testhdf5_fortran_1_8-shared @@ -427,7 +424,6 @@ if (BUILD_SHARED_LIBS) ) target_compile_options(fortranlib_test_F03-shared PRIVATE - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (fortranlib_test_F03-shared @@ -489,7 +485,6 @@ if (BUILD_SHARED_LIBS) ) target_compile_options(fflush1-shared PRIVATE - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (fflush1-shared @@ -551,7 +546,6 @@ if (BUILD_SHARED_LIBS) ) target_compile_options(fflush2-shared PRIVATE - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (fflush2-shared diff --git a/fortran/test/tH5F.F90 b/fortran/test/tH5F.F90 index d91ee9c..72920f2 100644 --- a/fortran/test/tH5F.F90 +++ b/fortran/test/tH5F.F90 @@ -103,6 +103,10 @@ CONTAINS ! INTEGER :: i, j + !number of objects + INTEGER(SIZE_T) :: obj_count + INTEGER(HID_T) :: t1, t2, t3, t4 + ! !data buffers ! @@ -133,11 +137,51 @@ CONTAINS CALL h5_fixname_f(filename2, fix_filename2, H5P_DEFAULT_F, error) if(error .ne. 0) stop + ! Test object counts + CALL h5tcopy_f(H5T_NATIVE_CHARACTER, t1, error) + CALL check(" h5tcopy_f",error,total_error) + CALL h5tcopy_f(H5T_NATIVE_CHARACTER, t2, error) + CALL check(" h5tcopy_f",error,total_error) + CALL h5tcopy_f(H5T_NATIVE_CHARACTER, t3, error) + CALL check(" h5tcopy_f",error,total_error) + CALL h5tcopy_f(H5T_NATIVE_CHARACTER, t4, error) + CALL check(" h5tcopy_f",error,total_error) + + CALL h5fget_obj_count_f(INT(H5F_OBJ_ALL_F,HID_T), H5F_OBJ_ALL_F, obj_count, error) + CALL check(" h5fget_obj_count_f",error,total_error) + + IF(obj_count.NE.4)THEN + total_error = total_error + 1 + ENDIF + ! !Create first file "mount1.h5" using default properties. ! CALL h5fcreate_f(fix_filename1, H5F_ACC_TRUNC_F, file1_id, error) - CALL check("h5fcreate_f",error,total_error) + CALL check("h5fcreate_f",error,total_error) + + CALL h5fget_obj_count_f(INT(H5F_OBJ_ALL_F,HID_T), H5F_OBJ_ALL_F, obj_count, error) + CALL check(" h5fget_obj_count_f",error,total_error) + + IF(obj_count.NE.5)THEN + total_error = total_error + 1 + ENDIF + + CALL h5tclose_f(t1, error) + CALL check("h5tclose_f",error,total_error) + CALL h5tclose_f(t2, error) + CALL check("h5tclose_f",error,total_error) + CALL h5tclose_f(t3, error) + CALL check("h5tclose_f",error,total_error) + CALL h5tclose_f(t4, error) + CALL check("h5tclose_f",error,total_error) + + CALL h5fget_obj_count_f(INT(H5F_OBJ_ALL_F,HID_T), H5F_OBJ_ALL_F, obj_count, error) + CALL check(" h5fget_obj_count_f",error,total_error) + + IF(obj_count.NE.1)THEN + total_error = total_error + 1 + ENDIF ! !Create group "/G" inside file "mount1.h5". @@ -211,9 +255,23 @@ CONTAINS ! CALL h5fopen_f (fix_filename1, H5F_ACC_RDWR_F, file1_id, error) CALL check("hfopen_f",error,total_error) + + CALL h5fget_obj_count_f(INT(H5F_OBJ_ALL_F,HID_T), H5F_OBJ_ALL_F, obj_count, error) + CALL check(" h5fget_obj_count_f",error,total_error) + + IF(obj_count.NE.1)THEN + total_error = total_error + 1 + ENDIF + CALL h5fopen_f (fix_filename2, H5F_ACC_RDWR_F, file2_id, error) CALL check("h5fopen_f",error,total_error) + CALL h5fget_obj_count_f(INT(H5F_OBJ_ALL_F,HID_T), H5F_OBJ_ALL_F, obj_count, error) + CALL check(" h5fget_obj_count_f",error,total_error) + + IF(obj_count.NE.2)THEN + total_error = total_error + 1 + ENDIF ! !mount the second file under the first file's "/G" group. ! @@ -245,6 +303,7 @@ CONTAINS do i = 1, NX do j = 1, NY IF (data_out(i,j) .NE. data_in(i, j)) THEN + total_error = total_error + 1 END IF end do end do @@ -267,11 +326,26 @@ CONTAINS ! !Close both files. ! + + CALL h5fget_obj_count_f(INT(H5F_OBJ_ALL_F,HID_T), H5F_OBJ_ALL_F, obj_count, error) + CALL check(" h5fget_obj_count_f",error,total_error) + + IF(obj_count.NE.2)THEN + total_error = total_error + 1 + ENDIF + CALL h5fclose_f(file1_id, error) CALL check("h5fclose_f",error,total_error) CALL h5fclose_f(file2_id, error) CALL check("h5fclose_f",error,total_error) + CALL h5fget_obj_count_f(INT(H5F_OBJ_ALL_F,HID_T), H5F_OBJ_ALL_F, obj_count, error) + CALL check(" h5fget_obj_count_f",error,total_error) + + IF(obj_count.NE.0)THEN + total_error = total_error + 1 + ENDIF + if(cleanup) CALL h5_cleanup_f(filename1, H5P_DEFAULT_F, error) CALL check("h5_cleanup_f", error, total_error) if(cleanup) CALL h5_cleanup_f(filename2, H5P_DEFAULT_F, error) diff --git a/hl/c++/examples/CMakeLists.txt b/hl/c++/examples/CMakeLists.txt index e66aa81..8e64239 100644 --- a/hl/c++/examples/CMakeLists.txt +++ b/hl/c++/examples/CMakeLists.txt @@ -5,7 +5,7 @@ project (HDF5_HL_CPP_EXAMPLES CXX) # Add in the examples for the Packet Table codes # -------------------------------------------------------------------- add_executable (ptExampleFL ${HDF5_HL_CPP_EXAMPLES_SOURCE_DIR}/ptExampleFL.cpp) -target_include_directories(ptExampleFL PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(ptExampleFL PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (ptExampleFL STATIC) target_link_libraries (ptExampleFL PRIVATE ${HDF5_HL_CPP_LIB_TARGET} diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt index 8e6de0c..77419c6 100644 --- a/hl/c++/src/CMakeLists.txt +++ b/hl/c++/src/CMakeLists.txt @@ -10,7 +10,7 @@ set (HDF5_HL_CPP_HDRS ${HDF5_HL_CPP_SRC_SOURCE_DIR}/H5PacketTable.h) add_library (${HDF5_HL_CPP_LIB_TARGET} STATIC ${HDF5_HL_CPP_SOURCES}) target_include_directories(${HDF5_HL_CPP_LIB_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) TARGET_C_PROPERTIES (${HDF5_HL_CPP_LIB_TARGET} STATIC) @@ -23,7 +23,7 @@ set (install_targets ${HDF5_HL_CPP_LIB_TARGET}) if (BUILD_SHARED_LIBS) add_library (${HDF5_HL_CPP_LIBSH_TARGET} SHARED ${HDF5_HL_CPP_SOURCES}) target_include_directories(${HDF5_HL_CPP_LIBSH_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) target_compile_definitions(${HDF5_HL_CPP_LIBSH_TARGET} diff --git a/hl/c++/test/CMakeLists.txt b/hl/c++/test/CMakeLists.txt index 3b5384a..68c049c 100644 --- a/hl/c++/test/CMakeLists.txt +++ b/hl/c++/test/CMakeLists.txt @@ -2,7 +2,7 @@ cmake_minimum_required (VERSION 3.10) project (HDF5_HL_CPP_TEST CXX) add_executable (hl_ptableTest ${HDF5_HL_CPP_TEST_SOURCE_DIR}/ptableTest.cpp) -target_include_directories(hl_ptableTest PRIVATE "${HDF5_HL_SRC_DIR}/test;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(hl_ptableTest PRIVATE "${HDF5_HL_SRC_DIR}/test;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (hl_ptableTest STATIC) target_link_libraries (hl_ptableTest PRIVATE ${HDF5_LIB_TARGET} diff --git a/hl/examples/CMakeLists.txt b/hl/examples/CMakeLists.txt index 2f9019d..97c6de5 100644 --- a/hl/examples/CMakeLists.txt +++ b/hl/examples/CMakeLists.txt @@ -28,7 +28,7 @@ set (examples foreach (example ${examples}) add_executable (hl_ex_${example} ${HDF5_HL_EXAMPLES_SOURCE_DIR}/${example}.c) - target_include_directories(hl_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(hl_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (hl_ex_${example} STATIC) target_link_libraries (hl_ex_${example} PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (hl_ex_${example} PROPERTIES FOLDER examples/hl) diff --git a/hl/fortran/src/CMakeLists.txt b/hl/fortran/src/CMakeLists.txt index 902b8dc..7ec3b63 100644 --- a/hl/fortran/src/CMakeLists.txt +++ b/hl/fortran/src/CMakeLists.txt @@ -56,7 +56,7 @@ set (HDF5_HL_F90_HEADERS ${HDF5_HL_F90_SRC_SOURCE_DIR}/H5LTf90proto.h) add_library (${HDF5_HL_F90_C_LIB_TARGET} STATIC ${HDF5_HL_F90_C_SOURCES} ${HDF5_HL_F90_HEADERS}) target_include_directories(${HDF5_HL_F90_C_LIB_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR}/static;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) TARGET_C_PROPERTIES (${HDF5_HL_F90_C_LIB_TARGET} STATIC) @@ -72,7 +72,7 @@ set (install_targets ${HDF5_HL_F90_C_LIB_TARGET}) if (BUILD_SHARED_LIBS) add_library (${HDF5_HL_F90_C_LIBSH_TARGET} SHARED ${HDF5_HL_F90_C_SOURCES} ${HDF5_HL_F90_HEADERS}) target_include_directories(${HDF5_HL_F90_C_LIBSH_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_F90_BINARY_DIR}/shared;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) target_compile_definitions(${HDF5_LIBSH_TARGET} @@ -201,7 +201,6 @@ if (BUILD_SHARED_LIBS) "H5_BUILT_AS_DYNAMIC_LIB" PRIVATE $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:BUILD_HDF5_HL_DLL;HDF5F90_WINDOWS> - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (${HDF5_HL_F90_LIBSH_TARGET} diff --git a/hl/fortran/test/CMakeLists.txt b/hl/fortran/test/CMakeLists.txt index 6ee362d..923989d 100644 --- a/hl/fortran/test/CMakeLists.txt +++ b/hl/fortran/test/CMakeLists.txt @@ -47,7 +47,6 @@ macro (ADD_H5_FORTRAN_EXE file) ) target_compile_options(hl_f90_${file}-shared PRIVATE - $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:/dll> $<$<STREQUAL:"x${CMAKE_Fortran_SIMULATE_ID}","xMSVC">:${WIN_COMPILE_FLAGS}> ) target_link_libraries (hl_f90_${file}-shared diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt index aa33e59..e339f11 100644 --- a/hl/src/CMakeLists.txt +++ b/hl/src/CMakeLists.txt @@ -31,7 +31,7 @@ set (HL_HEADERS add_library (${HDF5_HL_LIB_TARGET} STATIC ${HL_SOURCES} ${HL_HEADERS}) target_include_directories(${HDF5_HL_LIB_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) TARGET_C_PROPERTIES (${HDF5_HL_LIB_TARGET} STATIC) @@ -44,7 +44,7 @@ set (install_targets ${HDF5_HL_LIB_TARGET}) if (BUILD_SHARED_LIBS) add_library (${HDF5_HL_LIBSH_TARGET} SHARED ${HL_SOURCES} ${HL_HEADERS}) target_include_directories(${HDF5_HL_LIBSH_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) target_compile_definitions(${HDF5_HL_LIBSH_TARGET} diff --git a/hl/src/H5DO.c b/hl/src/H5DO.c index 99cf2f7..057c43b 100644 --- a/hl/src/H5DO.c +++ b/hl/src/H5DO.c @@ -11,90 +11,37 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#include <string.h> -#include <stdlib.h> -#include <assert.h> -#include <stdio.h> - /* High-level library internal header file */ #include "H5HLprivate2.h" /* public LT prototypes */ #include "H5DOpublic.h" - +#ifndef H5_NO_DEPRECATED_SYMBOLS /*------------------------------------------------------------------------- - * Function: H5DOwrite_chunk + * Function: H5DOwrite_chunk * - * Purpose: Writes an entire chunk to the file directly. + * Purpose: Writes an entire chunk to the file directly. * - * Return: Non-negative on success/Negative on failure + * The H5DOwrite_chunk() call was moved to H5Dwrite_chunk. This + * simple wrapper remains so that people can still link to the + * high-level library without changing their code. * - * Programmer: Raymond Lu - * 30 July 2012 + * Return: Non-negative on success/Negative on failure * *------------------------------------------------------------------------- */ herr_t -H5DOwrite_chunk(hid_t dset_id, hid_t dxpl_id, uint32_t filters, const hsize_t *offset, +H5DOwrite_chunk(hid_t dset_id, hid_t dxpl_id, uint32_t filters, const hsize_t *offset, size_t data_size, const void *buf) { - hbool_t created_dxpl = FALSE; /* Whether we created a DXPL */ - hbool_t do_direct_write = TRUE; /* Flag for direct writes */ - uint32_t data_size_32; /* Chunk data size (limited to 32-bits currently) */ - herr_t ret_value = FAIL; /* Return value */ - - /* Check arguments */ - if(dset_id < 0) - goto done; - if(!buf) - goto done; - if(!offset) - goto done; - if(!data_size) - goto done; - data_size_32 = (uint32_t)data_size; - if(data_size != (size_t)data_size_32) - goto done; - - /* If the user passed in a default DXPL, create one to pass to H5Dwrite() */ - if(H5P_DEFAULT == dxpl_id) { - if((dxpl_id = H5Pcreate(H5P_DATASET_XFER)) < 0) - goto done; - created_dxpl = TRUE; - } /* end if */ - - /* Set direct write parameters */ - if(H5Pset(dxpl_id, H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME, &do_direct_write) < 0) - goto done; - if(H5Pset(dxpl_id, H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME, &filters) < 0) - goto done; - if(H5Pset(dxpl_id, H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME, &offset) < 0) - goto done; - if(H5Pset(dxpl_id, H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME, &data_size_32) < 0) - goto done; + /* Call underlying H5D function */ + if (H5Dwrite_chunk(dset_id, dxpl_id, filters, offset, data_size, buf) < 0) + return FAIL; + else + return SUCCEED; - /* Write chunk */ - if(H5Dwrite(dset_id, 0, H5S_ALL, H5S_ALL, dxpl_id, buf) < 0) - goto done; - - /* Indicate success */ - ret_value = SUCCEED; - -done: - if(created_dxpl) { - if(H5Pclose(dxpl_id) < 0) - ret_value = FAIL; - } /* end if */ - else { - /* Reset the direct write flag on user DXPL */ - do_direct_write = FALSE; - if(H5Pset(dxpl_id, H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME, &do_direct_write) < 0) - ret_value = FAIL; - } - - return ret_value; } /* end H5DOwrite_chunk() */ @@ -103,10 +50,11 @@ done: * * Purpose: Reads an entire chunk from the file directly. * - * Return: Non-negative on success/Negative on failure + * The H5DOread_chunk() call was moved to H5Dread_chunk. This + * simple wrapper remains so that people can still link to the + * high-level library without changing their code. * - * Programmer: Matthew Strong (GE Healthcare) - * 14 February 2016 + * Return: Non-negative on success/Negative on failure * *--------------------------------------------------------------------------- */ @@ -114,71 +62,29 @@ herr_t H5DOread_chunk(hid_t dset_id, hid_t dxpl_id, const hsize_t *offset, uint32_t *filters, void *buf) { - hbool_t created_dxpl = FALSE; /* Whether we created a DXPL */ - hbool_t do_direct_read = TRUE; /* Flag for direct writes */ - herr_t ret_value = FAIL; /* Return value */ - - /* Check arguments */ - if(dset_id < 0) - goto done; - if(!buf) - goto done; - if(!offset) - goto done; - if(!filters) - goto done; + /* Call underlying H5D function */ + if (H5Dread_chunk(dset_id, dxpl_id, offset, filters, buf) < 0) + return FAIL; + else + return SUCCEED; + } /* end H5DOread_chunk() */ - /* If the user passed in a default DXPL, create one to pass to H5Dwrite() */ - if(H5P_DEFAULT == dxpl_id) { - if((dxpl_id = H5Pcreate(H5P_DATASET_XFER)) < 0) - goto done; - created_dxpl = TRUE; - } /* end if */ - - /* Set direct write parameters */ - if(H5Pset(dxpl_id, H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME, &do_direct_read) < 0) - goto done; - if(H5Pset(dxpl_id, H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME, &offset) < 0) - goto done; - - /* Read chunk */ - if(H5Dread(dset_id, 0, H5S_ALL, H5S_ALL, dxpl_id, buf) < 0) - goto done; - /* Get the filter mask */ - if(H5Pget(dxpl_id, H5D_XFER_DIRECT_CHUNK_READ_FILTERS_NAME, filters) < 0) - goto done; - - /* Indicate success */ - ret_value = SUCCEED; - -done: - if(created_dxpl) { - if(H5Pclose(dxpl_id) < 0) - ret_value = FAIL; - } /* end if */ - else { - /* Reset the direct read flag on user DXPL */ - do_direct_read = FALSE; - if(H5Pset(dxpl_id, H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME, &do_direct_read) < 0) - ret_value = FAIL; - } - - return ret_value; -} /* end H5DOread_chunk() */ +#endif /* H5_NO_DEPRECATED_SYMBOLS */ /*------------------------------------------------------------------------- - * Function: H5DOappend() + * Function: H5DOappend() * * Purpose: To append elements to a dataset. - * axis: the dataset dimension (zero-based) for the append - * extension: the # of elements to append for the axis-th dimension - * memtype: the datatype - * buf: buffer with data for the append * - * Return: Non-negative on success/Negative on failure + * axis: the dataset dimension (zero-based) for the append + * extension: the # of elements to append for the axis-th dimension + * memtype: the datatype + * buf: buffer with data for the append * - * Programmer: Vailin Choi; Jan 2014 + * Return: Non-negative on success/Negative on failure + * + * Programmer: Vailin Choi; Jan 2014 * * Note: * This routine is copied from the fast forward feature branch: features/hdf5_ff @@ -227,7 +133,7 @@ H5DOappend(hid_t dset_id, hid_t dxpl_id, unsigned axis, size_t extension, /* check arguments */ if(H5I_DATASET != H5Iget_type(dset_id)) - goto done; + goto done; /* If the user passed in a default DXPL, create one to pass to H5Dwrite() */ if(H5P_DEFAULT == dxpl_id) { @@ -236,39 +142,40 @@ H5DOappend(hid_t dset_id, hid_t dxpl_id, unsigned axis, size_t extension, created_dxpl = TRUE; } /* end if */ else if(TRUE != H5Pisa_class(dxpl_id, H5P_DATASET_XFER)) - goto done; + goto done; /* Get the dataspace of the dataset */ if(FAIL == (space_id = H5Dget_space(dset_id))) - goto done; + goto done; /* Get the rank of this dataspace */ if((sndims = H5Sget_simple_extent_ndims(space_id)) < 0) - goto done; + goto done; ndims = (unsigned)sndims; /* Verify correct axis */ if(axis >= ndims) - goto done; + goto done; /* Get the dimensions sizes of the dataspace */ if(H5Sget_simple_extent_dims(space_id, size, NULL) < 0) - goto done; + goto done; /* Adjust the dimension size of the requested dimension, - but first record the old dimension size */ + * but first record the old dimension size + */ old_size = size[axis]; size[axis] += extension; if(size[axis] < old_size) - goto done; + goto done; /* Set the extent of the dataset to the new dimension */ if(H5Dset_extent(dset_id, size) < 0) - goto done; + goto done; /* Get the new dataspace of the dataset */ if(FAIL == (new_space_id = H5Dget_space(dset_id))) - goto done; + goto done; /* Select a hyperslab corresponding to the append operation */ for(u = 0 ; u < ndims ; u++) { @@ -282,51 +189,51 @@ H5DOappend(hid_t dset_id, hid_t dxpl_id, unsigned axis, size_t extension, } /* end if */ } /* end for */ if(FAIL == H5Sselect_hyperslab(new_space_id, H5S_SELECT_SET, start, stride, count, block)) - goto done; + goto done; /* The # of elemnts in the new extended dataspace */ if((snelmts = H5Sget_select_npoints(new_space_id)) < 0) - goto done; + goto done; nelmts = (hsize_t)snelmts; /* create a memory space */ if(FAIL == (mem_space_id = H5Screate_simple(1, &nelmts, NULL))) - goto done; + goto done; /* Write the data */ if(H5Dwrite(dset_id, memtype, mem_space_id, new_space_id, dxpl_id, buf) < 0) - goto done; + goto done; /* Obtain the dataset's access property list */ if((dapl = H5Dget_access_plist(dset_id)) < 0) - goto done; + goto done; /* Allocate the boundary array */ boundary = (hsize_t *)HDmalloc(ndims * sizeof(hsize_t)); /* Retrieve the append flush property */ if(H5Pget_append_flush(dapl, ndims, boundary, &append_cb, &udata) < 0) - goto done; + goto done; /* No boundary for this axis */ if(boundary[axis] != 0) { - /* Determine whether a boundary is hit or not */ - for(k = start[axis]; k < size[axis]; k++) - if(!((k + 1) % boundary[axis])) { - hit = TRUE; - break; - } - - if(hit) { /* Hit the boundary */ - /* Invoke callback if there is one */ - if(append_cb && append_cb(dset_id, size, udata) < 0) - goto done; - - /* Do a dataset flush */ - if(H5Dflush(dset_id) < 0) - goto done; - } /* end if */ + /* Determine whether a boundary is hit or not */ + for(k = start[axis]; k < size[axis]; k++) + if(!((k + 1) % boundary[axis])) { + hit = TRUE; + break; + } + + if(hit) { /* Hit the boundary */ + /* Invoke callback if there is one */ + if(append_cb && append_cb(dset_id, size, udata) < 0) + goto done; + + /* Do a dataset flush */ + if(H5Dflush(dset_id) < 0) + goto done; + } /* end if */ } /* end if */ /* Indicate success */ @@ -341,22 +248,22 @@ done: /* Close old dataspace */ if(space_id != FAIL && H5Sclose(space_id) < 0) - ret_value = FAIL; + ret_value = FAIL; /* Close new dataspace */ if(new_space_id != FAIL && H5Sclose(new_space_id) < 0) - ret_value = FAIL; + ret_value = FAIL; /* Close memory dataspace */ if(mem_space_id != FAIL && H5Sclose(mem_space_id) < 0) - ret_value = FAIL; + ret_value = FAIL; /* Close the dataset access property list */ if(dapl != FAIL && H5Pclose(dapl) < 0) - ret_value = FAIL; + ret_value = FAIL; if(boundary) - HDfree(boundary); + HDfree(boundary); return ret_value; } /* H5DOappend() */ diff --git a/hl/src/H5DOpublic.h b/hl/src/H5DOpublic.h index d5c8de4..e09ebca 100644 --- a/hl/src/H5DOpublic.h +++ b/hl/src/H5DOpublic.h @@ -25,18 +25,23 @@ extern "C" { *------------------------------------------------------------------------- */ -H5_HLDLL herr_t H5DOwrite_chunk(hid_t dset_id, hid_t dxpl_id, uint32_t filters, - const hsize_t *offset, size_t data_size, const void *buf); - -H5_HLDLL herr_t H5DOread_chunk(hid_t dset_id, /*in*/ - hid_t dxpl_id, /*in*/ - const hsize_t *offset, /*in*/ - uint32_t *filters, /*out*/ - void *buf); /*out*/ - H5_HLDLL herr_t H5DOappend(hid_t dset_id, hid_t dxpl_id, unsigned axis, size_t extension, hid_t memtype, const void *buf); +/* Symbols defined for compatibility with previous versions of the HDF5 API. + * + * Use of these symbols is deprecated. + */ +#ifndef H5_NO_DEPRECATED_SYMBOLS + +/* Compatibility wrappers for functionality moved to H5D */ +H5_HLDLL herr_t H5DOwrite_chunk(hid_t dset_id, hid_t dxpl_id, uint32_t filters, + const hsize_t *offset, size_t data_size, const void *buf); +H5_HLDLL herr_t H5DOread_chunk(hid_t dset_id, hid_t dxpl_id, const hsize_t *offset, + uint32_t *filters /*out*/, void *buf /*out*/); + +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + #ifdef __cplusplus } #endif diff --git a/hl/src/H5DS.c b/hl/src/H5DS.c index 527c92b..d86cc98 100644 --- a/hl/src/H5DS.c +++ b/hl/src/H5DS.c @@ -160,11 +160,11 @@ herr_t H5DSattach_scale(hid_t did, return FAIL; /* get info for the dataset in the parameter list */ - if(H5Oget_info(did, &oi1) < 0) + if(H5Oget_info2(did, &oi1, H5O_INFO_BASIC) < 0) return FAIL; /* get info for the scale in the parameter list */ - if(H5Oget_info(dsid, &oi2) < 0) + if(H5Oget_info2(dsid, &oi2, H5O_INFO_BASIC) < 0) return FAIL; /* same object, not valid */ @@ -324,11 +324,11 @@ herr_t H5DSattach_scale(hid_t did, goto out; /* get info for DS in the parameter list */ - if(H5Oget_info(dsid, &oi1) < 0) + if(H5Oget_info2(dsid, &oi1, H5O_INFO_BASIC) < 0) goto out; /* get info for this DS */ - if(H5Oget_info(dsid_j, &oi2) < 0) + if(H5Oget_info2(dsid_j, &oi2, H5O_INFO_BASIC) < 0) goto out; /* same object, so this DS scale is already in this DIM IDX */ @@ -609,11 +609,11 @@ herr_t H5DSdetach_scale(hid_t did, return FAIL; /* get info for the dataset in the parameter list */ - if(H5Oget_info(did, &did_oi) < 0) + if(H5Oget_info2(did, &did_oi, H5O_INFO_BASIC) < 0) return FAIL; /* get info for the scale in the parameter list */ - if(H5Oget_info(dsid, &dsid_oi) < 0) + if(H5Oget_info2(dsid, &dsid_oi, H5O_INFO_BASIC) < 0) return FAIL; /* same object, not valid */ @@ -696,7 +696,7 @@ herr_t H5DSdetach_scale(hid_t did, goto out; /* get info for this DS */ - if(H5Oget_info(dsid_j, &tmp_oi) < 0) + if(H5Oget_info2(dsid_j, &tmp_oi, H5O_INFO_BASIC) < 0) goto out; /* Close the dereferenced dataset */ @@ -806,7 +806,7 @@ herr_t H5DSdetach_scale(hid_t did, goto out; /* get info for this dataset */ - if(H5Oget_info(did_i, &tmp_oi) < 0) + if(H5Oget_info2(did_i, &tmp_oi, H5O_INFO_BASIC) < 0) goto out; /* close the dereferenced dataset */ @@ -973,11 +973,11 @@ htri_t H5DSis_attached(hid_t did, return FAIL; /* get info for the dataset in the parameter list */ - if(H5Oget_info(did, &oi1) < 0) + if(H5Oget_info2(did, &oi1, H5O_INFO_BASIC) < 0) return FAIL; /* get info for the scale in the parameter list */ - if(H5Oget_info(dsid, &oi2) < 0) + if(H5Oget_info2(dsid, &oi2, H5O_INFO_BASIC) < 0) return FAIL; /* same object, not valid */ @@ -1054,11 +1054,11 @@ htri_t H5DSis_attached(hid_t did, goto out; /* get info for DS in the parameter list */ - if(H5Oget_info(dsid, &oi1) < 0) + if(H5Oget_info2(dsid, &oi1, H5O_INFO_BASIC) < 0) goto out; /* get info for this DS */ - if(H5Oget_info(dsid_j, &oi2) < 0) + if(H5Oget_info2(dsid_j, &oi2, H5O_INFO_BASIC) < 0) goto out; /* same object */ @@ -1144,11 +1144,11 @@ htri_t H5DSis_attached(hid_t did, goto out; /* get info for dataset in the parameter list */ - if(H5Oget_info(did, &oi3) < 0) + if(H5Oget_info2(did, &oi3, H5O_INFO_BASIC) < 0) goto out; /* get info for this dataset */ - if(H5Oget_info(did_i, &oi4) < 0) + if(H5Oget_info2(did_i, &oi4, H5O_INFO_BASIC) < 0) goto out; /* same object */ diff --git a/hl/test/CMakeLists.txt b/hl/test/CMakeLists.txt index 7911d1b..238b5e1 100644 --- a/hl/test/CMakeLists.txt +++ b/hl/test/CMakeLists.txt @@ -19,7 +19,7 @@ configure_file (${HDF5_HL_TEST_SOURCE_DIR}/H5srcdir_str.h.in H5srcdir_str.h @ON # -------------------------------------------------------------------- MACRO (HL_ADD_EXE hl_name) add_executable (hl_${hl_name} ${hl_name}.c) - target_include_directories(hl_${hl_name} PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(hl_${hl_name} PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (hl_${hl_name} STATIC) target_link_libraries (hl_${hl_name} PRIVATE ${HDF5_HL_LIB_TARGET} @@ -31,7 +31,7 @@ ENDMACRO () MACRO (HL_ADD_SHEXE hl_name) add_executable (hl_${hl_name} ${hl_name}.c) - target_include_directories(hl_${hl_name} PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(hl_${hl_name} PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (hl_${hl_name} SHARED) target_link_libraries (hl_${hl_name} PRIVATE ${HDF5_HL_LIBSH_TARGET} @@ -46,13 +46,13 @@ HL_ADD_EXE (test_image) HL_ADD_EXE (test_file_image) HL_ADD_EXE (test_table) HL_ADD_EXE (test_ds) -HL_ADD_EXE (test_dset_opt) HL_ADD_EXE (test_ld) HL_ADD_EXE (test_dset_append) +HL_ADD_EXE (test_h5do_compat) # test_packet has two source files add_executable (hl_test_packet test_packet.c test_packet_vlen.c) -target_include_directories(hl_test_packet PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(hl_test_packet PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (hl_test_packet STATIC) target_link_libraries (hl_test_packet PRIVATE ${HDF5_HL_LIB_TARGET} @@ -67,7 +67,7 @@ set_target_properties (hl_test_packet PROPERTIES FOLDER test/hl) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (hl_gen_test_ds gen_test_ds.c) - target_include_directories(hl_gen_test_ds PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(hl_gen_test_ds PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (hl_gen_test_ds STATIC) target_link_libraries (hl_gen_test_ds PRIVATE ${HDF5_HL_LIB_TARGET} @@ -77,7 +77,7 @@ if (HDF5_BUILD_GENERATORS) set_target_properties (hl_gen_test_ds PROPERTIES FOLDER test/hl/gen) add_executable (hl_gen_test_ld gen_test_ld.c) - target_include_directories(hl_gen_test_ld PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(hl_gen_test_ld PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (hl_gen_test_ld STATIC) target_link_libraries (hl_gen_test_ld PRIVATE ${HDF5_HL_LIB_TARGET} diff --git a/hl/test/CMakeTests.cmake b/hl/test/CMakeTests.cmake index e5eb58e..4e945bc 100644 --- a/hl/test/CMakeTests.cmake +++ b/hl/test/CMakeTests.cmake @@ -79,6 +79,7 @@ add_test ( file_img1.h5 file_img2.h5 test_append.h5 + h5do_compat.h5 test_detach.h5 test_ds1.h5 test_ds2.h5 @@ -90,7 +91,6 @@ add_test ( test_ds8.h5 test_ds9.h5 test_ds10.h5 - test_dectris.h5 test_image1.h5 test_image2.h5 test_image3.h5 @@ -115,7 +115,7 @@ HL_add_test (test_file_image) HL_add_test (test_table) HL_add_test (test_ds) HL_add_test (test_packet) -HL_add_test (test_dset_opt) HL_add_test (test_ld) HL_add_test (test_dset_append) +HL_add_test (test_h5do_compat) diff --git a/hl/test/Makefile.am b/hl/test/Makefile.am index e16550f..2e63438 100644 --- a/hl/test/Makefile.am +++ b/hl/test/Makefile.am @@ -26,8 +26,8 @@ LDADD=$(LIBH5_HL) $(LIBH5TEST) $(LIBHDF5) # Test programs. These are our main targets. They should be listed in the # order to be executed, generally most specific tests to least specific tests. -TEST_PROG=test_lite test_image test_file_image test_table test_ds test_packet test_dset_opt \ - test_ld test_dset_append +TEST_PROG=test_lite test_image test_file_image test_table test_ds test_packet \ + test_ld test_dset_append test_h5do_compat check_PROGRAMS=$(TEST_PROG) # These programs generate test files for the tests. They don't need to be @@ -45,8 +45,8 @@ endif CHECK_CLEANFILES+=combine_tables[1-2].h5 test_ds[1-9].h5 test_ds10.h5 \ test_image[1-3].h5 file_img[1-2].h5 test_lite[1-4].h5 test_table.h5 \ test_packet_table.h5 test_packet_compress.h5 test_detach.h5 \ - test_packet_table_vlen.h5 testfl_packet_table_vlen.h5 \ - test_dectris.h5 test_append.h5 + test_packet_table_vlen.h5 testfl_packet_table_vlen.h5 test_append.h5 \ + h5do_compat.h5 # Sources for test_packet executable test_packet_SOURCES=test_packet.c test_packet_vlen.c diff --git a/hl/test/test_h5do_compat.c b/hl/test/test_h5do_compat.c new file mode 100644 index 0000000..4df5eef --- /dev/null +++ b/hl/test/test_h5do_compat.c @@ -0,0 +1,286 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include "h5hltest.h" +#include "H5DOpublic.h" + +/* This test is a minimal test to ensure that the H5DO compatibility wrappers + * work correctly. + */ + +#ifndef H5_NO_DEPRECATED_SYMBOLS + +#define FILE_NAME "h5do_compat.h5" +#define DATASET_NAME "direct_chunk_io" + +#define NX 8 +#define CHUNK_NX 4 + + +/*------------------------------------------------------------------------- + * Function: test_direct_chunk_write + * + * Purpose: Test the basic functionality of H5DOwrite_chunk + * + * Return: Success: An identifer for the dataset used in the tests + * Failure: H5I_INVALID_HID + * + *------------------------------------------------------------------------- + */ +static hid_t +create_dataset(hid_t fid) +{ + hid_t did = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t dcpl_id = H5I_INVALID_HID; + hsize_t dims[1] = {NX}; + hsize_t maxdims[1] = {H5S_UNLIMITED}; + hsize_t chunk_dims[1] = {CHUNK_NX}; + int data[NX]; + int i; + + /* Create a dataspace for the new dataset */ + if ((sid = H5Screate_simple(1, dims, maxdims)) < 0) + goto error; + + /* Set up dataset creation parameters */ + if ((dcpl_id = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto error; + if (H5Pset_chunk(dcpl_id, 1, chunk_dims) < 0) + goto error; + + /* Create a new dataset */ + if ((did = H5Dcreate2(fid, DATASET_NAME, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl_id, H5P_DEFAULT)) < 0) + goto error; + + /* Initialize the data */ + for (i = 0; i < NX; i++) + data[i] = i; + + /* Write the initialized data */ + if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data) < 0) + goto error; + + /* Close everything */ + if (H5Sclose(sid) < 0) + goto error; + if (H5Pclose(dcpl_id) < 0) + goto error; + + return did; + + error: + H5E_BEGIN_TRY { + H5Dclose(did); + H5Sclose(sid); + H5Pclose(dcpl_id); + } H5E_END_TRY; + + return H5I_INVALID_HID; + +} /* end create_dataset() */ + + + +/*------------------------------------------------------------------------- + * Function: test_direct_chunk_write + * + * Purpose: Test the basic functionality of H5DOwrite_chunk + * + * Return: Success: 0 + * Failure: 1 + * + *------------------------------------------------------------------------- + */ +static int +test_direct_chunk_write(hid_t did) +{ + unsigned filter_mask = 0; + int chunk_data[CHUNK_NX]; + hsize_t offset[1]; + size_t data_size; + int i; + + TESTING("H5DOwrite_chunk wrapper"); + + /* Set the size of the chunk data */ + data_size = CHUNK_NX * sizeof(int); + + /* Initialize the chunk data */ + for (i = 0; i < CHUNK_NX; i++) + chunk_data[i] = (i * 10) + i; + + /* Write the direct chunk data repeatedly to cover all the chunks in the + * dataset, using the direct writing function. + */ + offset[0] = 0; + for (i = 0; i < NX/CHUNK_NX; i++) { + if (H5DOwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, data_size, chunk_data) < 0) + TEST_ERROR + offset[0] += CHUNK_NX; + } + + PASSED(); + return 0; + +error: + H5_FAILED(); + return 1; +} /* test_direct_chunk_write() */ + + +/*------------------------------------------------------------------------- + * Function: test_direct_chunk_read + * + * Purpose: Test the basic functionality of H5DOread_chunk + * + * Return: Success: 0 + * Failure: 1 + * + *------------------------------------------------------------------------- + */ +static int +test_direct_chunk_read(hid_t did) +{ + hid_t mem_sid = H5I_INVALID_HID; + hid_t file_sid = H5I_INVALID_HID; + hsize_t dims[1] = {NX}; + hsize_t chunk_dims[1] = {CHUNK_NX}; + + unsigned filter_mask; + int chunk_data[CHUNK_NX]; /* Chunk read with H5DOread_chunk */ + int check[CHUNK_NX]; /* Chunk read with H5Dread */ + hsize_t offset[1]; + + hsize_t start[1]; /* Start of hyperslab */ + hsize_t stride[1]; /* Stride of hyperslab */ + hsize_t count[1]; /* Block count */ + hsize_t block[1]; /* Block sizes */ + + int i,j; + + TESTING("H5DOread_chunk wrapper"); + + /* Create dataspaces for reading */ + if ((mem_sid = H5Screate_simple(1, chunk_dims, NULL)) < 0) + TEST_ERROR + if ((file_sid = H5Screate_simple(1, dims, NULL)) < 0) + TEST_ERROR + + /* For each chunk in the dataset, compare the result of H5Dread and H5DOread_chunk. */ + for (i = 0; i < NX/CHUNK_NX; i++) { + + /* Select hyperslab for one chunk in the file */ + start[0] = (hsize_t)i * CHUNK_NX; + stride[0] = 1; + count[0] = 1; + block[0] = CHUNK_NX; + + /* Hyperslab selection equals single chunk */ + if (H5Sselect_hyperslab(file_sid, H5S_SELECT_SET, start, stride, count, block) < 0) + TEST_ERROR + + /* Read the chunk back */ + if (H5Dread(did, H5T_NATIVE_INT, mem_sid, file_sid, H5P_DEFAULT, check) < 0) + TEST_ERROR + + /* Read the raw chunk back */ + HDmemset(chunk_data, 0, CHUNK_NX * sizeof(int)); + filter_mask = UINT_MAX; + offset[0] = (hsize_t)i * CHUNK_NX; + if (H5DOread_chunk(did, H5P_DEFAULT, offset, &filter_mask, chunk_data) < 0) + TEST_ERROR + + /* Check filter mask return value */ + if (filter_mask != 0) + TEST_ERROR + + /* Check that the values are correct */ + for (j = 0; j < CHUNK_NX; j++) + if (chunk_data[i] != check[i]) + TEST_ERROR + } + + /* Close */ + if (H5Sclose(mem_sid) < 0) + TEST_ERROR + if (H5Sclose(file_sid) < 0) + TEST_ERROR + + PASSED(); + return 0; + +error: + H5E_BEGIN_TRY { + H5Sclose(mem_sid); + H5Sclose(file_sid); + } H5E_END_TRY; + + H5_FAILED(); + return 1; +} /* test_direct_chunk_read() */ + +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + + +/*------------------------------------------------------------------------- + * Function: main + * + * Purpose: Test direct chunk write function H5DOwrite_chunk and + * chunk direct read function H5DOread_chunk + * + * Return: Success: 0 + * Failure: 1 + * + *------------------------------------------------------------------------- + */ +int main( void ) +{ +#ifdef H5_NO_DEPRECATED_SYMBOLS + + HDputs("Direct chunk read/write wrapper tests SKIPPED."); + HDputs("(Backward compatibility not configured)"); + return EXIT_SUCCESS; + +#else + + hid_t fid = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; + int nerrors = 0; + + if ((fid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto error; + + if ((did = create_dataset(fid)) < 0) + goto error; + + nerrors += test_direct_chunk_write(did); + nerrors += test_direct_chunk_read(did); + + if (H5Dclose(did) < 0) + goto error; + if (H5Fclose(fid) < 0) + goto error; + + /* check for errors */ + if (nerrors) + goto error; + + HDputs("All direct chunk read/write wrapper tests passed."); + return EXIT_SUCCESS; + +error: + HDputs("*** TESTS FAILED ***"); + return EXIT_FAILURE; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ +} /* end main() */ diff --git a/hl/tools/gif2h5/CMakeLists.txt b/hl/tools/gif2h5/CMakeLists.txt index 1d0e87c..a27ab18 100644 --- a/hl/tools/gif2h5/CMakeLists.txt +++ b/hl/tools/gif2h5/CMakeLists.txt @@ -15,7 +15,7 @@ set (GIF2H5_SOURCES #-- Add gif2hdf5 program add_executable (gif2h5 ${GIF2H5_SOURCES}) -target_include_directories(gif2h5 PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(gif2h5 PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (gif2h5 STATIC) target_link_libraries (gif2h5 PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (gif2h5 PROPERTIES FOLDER tools/hl) @@ -27,7 +27,7 @@ set (hdf2gif_SOURCES ${HDF5_HL_TOOLS_GIF2H5_SOURCE_DIR}/hdfgifwr.c ) add_executable (h52gif ${hdf2gif_SOURCES}) -target_include_directories(h52gif PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h52gif PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h52gif STATIC) target_link_libraries (h52gif PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h52gif PROPERTIES FOLDER tools/hl) @@ -41,7 +41,7 @@ if (BUILD_TESTING) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (hl_h52gifgentest ${HDF5_HL_TOOLS_GIF2H5_SOURCE_DIR}/h52gifgentst.c) - target_include_directories(hl_h52gifgentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(hl_h52gifgentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (hl_h52gifgentest STATIC) target_link_libraries (hl_h52gifgentest PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (hl_h52gifgentest PROPERTIES FOLDER generator/tools/hl) diff --git a/hl/tools/h5watch/CMakeLists.txt b/hl/tools/h5watch/CMakeLists.txt index 8ab1e41..1d1c341 100644 --- a/hl/tools/h5watch/CMakeLists.txt +++ b/hl/tools/h5watch/CMakeLists.txt @@ -10,7 +10,7 @@ set (H5WATCH_SOURCES #-- Add h5watch program add_executable (h5watch ${H5WATCH_SOURCES}) -target_include_directories(h5watch PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5watch PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5watch STATIC) target_link_libraries (h5watch PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5watch PROPERTIES FOLDER tools/hl) @@ -21,7 +21,7 @@ if (BUILD_TESTING) ${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/swmr_check_compat_vfd.c ) add_executable (hl_swmr_check_compat_vfd ${hl_swmr_check_compat_vfd_SOURCES}) - target_include_directories(hl_swmr_check_compat_vfd PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(hl_swmr_check_compat_vfd PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (hl_swmr_check_compat_vfd STATIC) target_link_libraries (hl_swmr_check_compat_vfd PRIVATE ${HDF5_LIB_TARGET}) set_target_properties (hl_swmr_check_compat_vfd PROPERTIES FOLDER tools/hl) @@ -31,13 +31,13 @@ if (BUILD_TESTING) ${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/extend_dset.c ) add_executable (extend_dset ${extend_dset_SOURCES}) - target_include_directories(extend_dset PRIVATE "${HDF5_HL_SRC_DIR}/test;${HDF5_HL_SRC_DIR}/src;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(extend_dset PRIVATE "${HDF5_HL_SRC_DIR}/test;${HDF5_HL_SRC_DIR}/src;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (extend_dset STATIC) target_link_libraries (extend_dset PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_TEST_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (extend_dset PROPERTIES FOLDER tools/hl) add_executable (h5watchgentest ${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/h5watchgentest.c) - target_include_directories(h5watchgentest PRIVATE "${HDF5_HL_SRC_DIR}/src;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5watchgentest PRIVATE "${HDF5_HL_SRC_DIR}/src;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5watchgentest STATIC) target_link_libraries (h5watchgentest PRIVATE ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5watchgentest PROPERTIES FOLDER generator/tools/hl) diff --git a/java/examples/datasets/CMakeLists.txt b/java/examples/datasets/CMakeLists.txt index 5ac241a..1375372 100644 --- a/java/examples/datasets/CMakeLists.txt +++ b/java/examples/datasets/CMakeLists.txt @@ -10,13 +10,9 @@ set (HDF_JAVA_EXAMPLES H5Ex_D_Compact H5Ex_D_External H5Ex_D_FillValue - H5Ex_D_Gzip H5Ex_D_Hyperslab H5Ex_D_ReadWrite - H5Ex_D_Shuffle - H5Ex_D_Szip H5Ex_D_UnlimitedAdd - H5Ex_D_UnlimitedGzip H5Ex_D_UnlimitedMod H5Ex_D_Nbit H5Ex_D_Transform @@ -24,6 +20,25 @@ set (HDF_JAVA_EXAMPLES H5Ex_D_Soint ) +set (HDF_JAVA_ZLIB_EXAMPLES + H5Ex_D_Gzip + H5Ex_D_Shuffle + H5Ex_D_UnlimitedGzip +) + +set (HDF_JAVA_SZIP_EXAMPLES + H5Ex_D_Szip +) + +# detect whether the encoder is present. + if (H5_HAVE_FILTER_DEFLATE) + set (${HDF_JAVA_EXAMPLES} ${HDF_JAVA_EXAMPLES} ${HDF_JAVA_ZLIB_EXAMPLES}) + endif () + + if (H5_HAVE_FILTER_SZIP) + set (${HDF_JAVA_EXAMPLES} ${HDF_JAVA_EXAMPLES} ${HDF_JAVA_SZIP_EXAMPLES}) + endif (H5_HAVE_FILTER_SZIP) + if (WIN32) set (CMAKE_JAVA_INCLUDE_FLAG_SEP ";") else () @@ -80,15 +95,6 @@ ENDMACRO () if (BUILD_TESTING) -# detect whether the encoder is present. - if (H5_HAVE_FILTER_DEFLATE) - set (USE_FILTER_DEFLATE "true") - endif () - - if (H5_HAVE_FILTER_SZIP) - set (USE_FILTER_SZIP "true") - endif (H5_HAVE_FILTER_SZIP) - foreach (example ${HDF_JAVA_EXAMPLES}) if ("${example}" STREQUAL "H5Ex_D_External") add_test ( @@ -118,13 +124,7 @@ if (BUILD_TESTING) ) set_tests_properties (JAVA_datasets-${example}-copy-objects PROPERTIES DEPENDS JAVA_datasets-${example}-clear-objects) set (last_test "JAVA_datasets-${example}-copy-objects") - if ("${example}" STREQUAL "H5Ex_D_Szip") - if (USE_FILTER_SZIP) - ADD_H5_TEST (${example} 0) - endif () - else () - ADD_H5_TEST (${example} 0) - endif () + ADD_H5_TEST (${example} 0) endforeach () endif () diff --git a/java/examples/datasets/JavaDatasetExample.sh.in b/java/examples/datasets/JavaDatasetExample.sh.in index 740b07d..cb16d45 100644 --- a/java/examples/datasets/JavaDatasetExample.sh.in +++ b/java/examples/datasets/JavaDatasetExample.sh.in @@ -52,8 +52,8 @@ test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR # Comment '#' without space can be used. # -------------------------------------------------------------------- LIST_LIBRARY_FILES=" -$HDFLIB_HOME/slf4j-api-1.7.5.jar -$HDFLIB_HOME/ext/slf4j-simple-1.7.5.jar +$HDFLIB_HOME/slf4j-api-1.7.25.jar +$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar $top_builddir/src/.libs/libhdf5.* $top_builddir/java/src/jni/.libs/libhdf5_java.* $top_builddir/java/src/$JARFILE @@ -117,7 +117,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR() # skip rm if srcdir is same as destdir # this occurs when build/test performed in source dir and # make cp fail - SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.5.jar` + SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.25.jar` INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then @@ -183,7 +183,7 @@ JAVAEXEFLAGS=@H5_JAVAFLAGS@ COPY_LIBFILES_TO_BLDLIBDIR COPY_DATAFILES_TO_BLDDIR -CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/slf4j-api-1.7.5.jar:"$BLDLIBDIR"/slf4j-simple-1.7.5.jar:"$TESTJARFILE"" +CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/slf4j-api-1.7.25.jar:"$BLDLIBDIR"/slf4j-simple-1.7.25.jar:"$TESTJARFILE"" TEST=/usr/bin/test if [ ! -x /usr/bin/test ] diff --git a/java/examples/datasets/Makefile.am b/java/examples/datasets/Makefile.am index ddd6d39..b442603 100644 --- a/java/examples/datasets/Makefile.am +++ b/java/examples/datasets/Makefile.am @@ -28,7 +28,7 @@ classes: pkgpath = examples/datasets hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar -CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.5.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.5.jar:$$CLASSPATH +CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.25.jar:$$CLASSPATH jarfile = jar$(PACKAGE_TARNAME)datasets.jar diff --git a/java/examples/datatypes/JavaDatatypeExample.sh.in b/java/examples/datatypes/JavaDatatypeExample.sh.in index 590a547..033442a 100644 --- a/java/examples/datatypes/JavaDatatypeExample.sh.in +++ b/java/examples/datatypes/JavaDatatypeExample.sh.in @@ -49,8 +49,8 @@ test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR # Comment '#' without space can be used. # -------------------------------------------------------------------- LIST_LIBRARY_FILES=" -$HDFLIB_HOME/slf4j-api-1.7.5.jar -$HDFLIB_HOME/ext/slf4j-simple-1.7.5.jar +$HDFLIB_HOME/slf4j-api-1.7.25.jar +$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar $top_builddir/src/.libs/libhdf5.* $top_builddir/java/src/jni/.libs/libhdf5_java.* $top_builddir/java/src/$JARFILE @@ -114,7 +114,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR() # skip rm if srcdir is same as destdir # this occurs when build/test performed in source dir and # make cp fail - SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.5.jar` + SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.25.jar` INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then @@ -179,7 +179,7 @@ JAVAEXEFLAGS=@H5_JAVAFLAGS@ COPY_LIBFILES_TO_BLDLIBDIR COPY_DATAFILES_TO_BLDDIR -CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/slf4j-api-1.7.5.jar:"$BLDLIBDIR"/slf4j-simple-1.7.5.jar:"$TESTJARFILE"" +CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/slf4j-api-1.7.25.jar:"$BLDLIBDIR"/slf4j-simple-1.7.25.jar:"$TESTJARFILE"" TEST=/usr/bin/test if [ ! -x /usr/bin/test ] diff --git a/java/examples/datatypes/Makefile.am b/java/examples/datatypes/Makefile.am index f6e58f1..5e0e971 100644 --- a/java/examples/datatypes/Makefile.am +++ b/java/examples/datatypes/Makefile.am @@ -28,7 +28,7 @@ classes: pkgpath = examples/datatypes hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar -CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.5.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.5.jar:$$CLASSPATH +CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.25.jar:$$CLASSPATH jarfile = jar$(PACKAGE_TARNAME)datatypes.jar diff --git a/java/examples/groups/JavaGroupExample.sh.in b/java/examples/groups/JavaGroupExample.sh.in index 53c0045..36df02e 100644 --- a/java/examples/groups/JavaGroupExample.sh.in +++ b/java/examples/groups/JavaGroupExample.sh.in @@ -51,8 +51,8 @@ test -d $BLDREFDIR || mkdir -p $BLDREFDIR # Comment '#' without space can be used. # -------------------------------------------------------------------- LIST_LIBRARY_FILES=" -$HDFLIB_HOME/slf4j-api-1.7.5.jar -$HDFLIB_HOME/ext/slf4j-simple-1.7.5.jar +$HDFLIB_HOME/slf4j-api-1.7.25.jar +$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar $top_builddir/src/.libs/libhdf5.* $top_builddir/java/src/jni/.libs/libhdf5_java.* $top_builddir/java/src/$JARFILE @@ -109,7 +109,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR() # skip rm if srcdir is same as destdir # this occurs when build/test performed in source dir and # make cp fail - SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.5.jar` + SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.25.jar` INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then @@ -225,7 +225,7 @@ COPY_LIBFILES_TO_BLDLIBDIR COPY_DATAFILES_TO_BLDDIR COPY_REFFILES_TO_BLDREFDIR -CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/slf4j-api-1.7.5.jar:"$BLDLIBDIR"/slf4j-simple-1.7.5.jar:"$TESTJARFILE"" +CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/slf4j-api-1.7.25.jar:"$BLDLIBDIR"/slf4j-simple-1.7.25.jar:"$TESTJARFILE"" TEST=/usr/bin/test if [ ! -x /usr/bin/test ] diff --git a/java/examples/groups/Makefile.am b/java/examples/groups/Makefile.am index 4da17f9..09df743 100644 --- a/java/examples/groups/Makefile.am +++ b/java/examples/groups/Makefile.am @@ -28,7 +28,7 @@ classes: pkgpath = examples/groups hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar -CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.5.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.5.jar:$$CLASSPATH +CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.25.jar:$$CLASSPATH jarfile = jar$(PACKAGE_TARNAME)groups.jar diff --git a/java/examples/intro/JavaIntroExample.sh.in b/java/examples/intro/JavaIntroExample.sh.in index 3c3036a..077146d 100644 --- a/java/examples/intro/JavaIntroExample.sh.in +++ b/java/examples/intro/JavaIntroExample.sh.in @@ -49,8 +49,8 @@ test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR # Comment '#' without space can be used. # -------------------------------------------------------------------- LIST_LIBRARY_FILES=" -$HDFLIB_HOME/slf4j-api-1.7.5.jar -$HDFLIB_HOME/ext/slf4j-simple-1.7.5.jar +$HDFLIB_HOME/slf4j-api-1.7.25.jar +$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar $top_builddir/src/.libs/libhdf5.* $top_builddir/java/src/jni/.libs/libhdf5_java.* $top_builddir/java/src/$JARFILE @@ -103,7 +103,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR() # skip rm if srcdir is same as destdir # this occurs when build/test performed in source dir and # make cp fail - SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.5.jar` + SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.25.jar` INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then @@ -168,7 +168,7 @@ JAVAEXEFLAGS=@H5_JAVAFLAGS@ COPY_LIBFILES_TO_BLDLIBDIR COPY_DATAFILES_TO_BLDDIR -CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/slf4j-api-1.7.5.jar:"$BLDLIBDIR"/slf4j-simple-1.7.5.jar:"$TESTJARFILE"" +CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/slf4j-api-1.7.25.jar:"$BLDLIBDIR"/slf4j-simple-1.7.25.jar:"$TESTJARFILE"" TEST=/usr/bin/test if [ ! -x /usr/bin/test ] diff --git a/java/examples/intro/Makefile.am b/java/examples/intro/Makefile.am index 0df08cb..33f44c2 100644 --- a/java/examples/intro/Makefile.am +++ b/java/examples/intro/Makefile.am @@ -28,7 +28,7 @@ classes: pkgpath = examples/intro hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar -CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.5.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.5.jar:$$CLASSPATH +CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.25.jar:$$CLASSPATH jarfile = jar$(PACKAGE_TARNAME)intro.jar diff --git a/java/lib/ext/slf4j-nop-1.7.25.jar b/java/lib/ext/slf4j-nop-1.7.25.jar Binary files differnew file mode 100644 index 0000000..78c7295 --- /dev/null +++ b/java/lib/ext/slf4j-nop-1.7.25.jar diff --git a/java/lib/ext/slf4j-nop-1.7.5.jar b/java/lib/ext/slf4j-nop-1.7.5.jar Binary files differdeleted file mode 100644 index e55bdd8..0000000 --- a/java/lib/ext/slf4j-nop-1.7.5.jar +++ /dev/null diff --git a/java/lib/ext/slf4j-simple-1.7.25.jar b/java/lib/ext/slf4j-simple-1.7.25.jar Binary files differnew file mode 100644 index 0000000..b29ca12 --- /dev/null +++ b/java/lib/ext/slf4j-simple-1.7.25.jar diff --git a/java/lib/ext/slf4j-simple-1.7.5.jar b/java/lib/ext/slf4j-simple-1.7.5.jar Binary files differdeleted file mode 100644 index 9dece31..0000000 --- a/java/lib/ext/slf4j-simple-1.7.5.jar +++ /dev/null diff --git a/java/lib/slf4j-api-1.7.25.jar b/java/lib/slf4j-api-1.7.25.jar Binary files differnew file mode 100644 index 0000000..7e62f13 --- /dev/null +++ b/java/lib/slf4j-api-1.7.25.jar diff --git a/java/lib/slf4j-api-1.7.5.jar b/java/lib/slf4j-api-1.7.5.jar Binary files differdeleted file mode 100644 index 8766455..0000000 --- a/java/lib/slf4j-api-1.7.5.jar +++ /dev/null diff --git a/java/src/Makefile.am b/java/src/Makefile.am index 64eef0c..bd55c39 100644 --- a/java/src/Makefile.am +++ b/java/src/Makefile.am @@ -37,7 +37,7 @@ jarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar hdf5_javadir = $(libdir) pkgpath = hdf/hdf5lib -CLASSPATH_ENV=CLASSPATH=.:$(top_srcdir)/java/lib/slf4j-api-1.7.5.jar:$$CLASSPATH +CLASSPATH_ENV=CLASSPATH=.:$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$$CLASSPATH AM_JAVACFLAGS = $(H5_JAVACFLAGS) -deprecation diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java index 62cfb6d..f58623e 100644 --- a/java/src/hdf/hdf5lib/H5.java +++ b/java/src/hdf/hdf5lib/H5.java @@ -1746,20 +1746,15 @@ public class H5 implements java.io.Serializable { status = H5Dread_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (double[]) obj, isCriticalPinning); } - else if (H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) { + else if ((H5.H5Tdetect_class(mem_type_id, HDF5Constants.H5T_REFERENCE) && (is1D && (dataClass.getComponentType() == String.class))) || H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) { log.trace("H5Dread_reg_ref"); status = H5Dread_reg_ref(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (String[]) obj); } else if (is1D && (dataClass.getComponentType() == String.class)) { log.trace("H5Dread_string type"); - if (H5.H5Tis_variable_str(mem_type_id)) { - status = H5Dread_VLStrings(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (Object[]) obj); - } - else { - status = H5Dread_string(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, + status = H5Dread_string(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (String[]) obj); - } } else { // Create a data buffer to hold the data into a Java Array @@ -1979,7 +1974,7 @@ public class H5 implements java.io.Serializable { Class dataClass = obj.getClass(); if (!dataClass.isArray()) { - throw (new HDF5JavaException("H5Dread: data is not an array")); + throw (new HDF5JavaException("H5Dwrite: data is not an array")); } String cname = dataClass.getName(); @@ -2012,13 +2007,8 @@ public class H5 implements java.io.Serializable { } else if (is1D && (dataClass.getComponentType() == String.class)) { log.trace("H5Dwrite_string type"); - if (H5.H5Tis_variable_str(mem_type_id)) { - status = H5Dwrite_VLStrings(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (Object[]) obj); - } - else { - status = H5Dwrite_string(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, + status = H5Dwrite_string(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (String[]) obj); - } } else { HDFArray theArray = new HDFArray(obj); @@ -2084,6 +2074,9 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Dwrite_string(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; + public synchronized static native int H5DwriteVL(long dataset_id, long mem_type_id, long mem_space_id, + long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + /** * H5Dwrite_VLStrings writes a (partial) variable length String dataset, specified by its identifier dataset_id, from * the application memory buffer buf into the file. @@ -4287,7 +4280,27 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ - public synchronized static native H5O_info_t H5Oget_info(long loc_id) throws HDF5LibraryException, + public static H5O_info_t H5Oget_info(long loc_id) throws HDF5LibraryException, + NullPointerException { + return H5Oget_info(loc_id, HDF5Constants.H5O_INFO_ALL); + } + + /** + * H5Oget_info retrieves the metadata for an object specified by an identifier. + * + * @param loc_id + * IN: Identifier for target object + * @param fields + * IN: Object fields to select + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public synchronized static native H5O_info_t H5Oget_info(long loc_id, int fields) throws HDF5LibraryException, NullPointerException; /** @@ -4314,8 +4327,39 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ + public static H5O_info_t H5Oget_info_by_idx(long loc_id, String group_name, int idx_type, + int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException { + return H5Oget_info_by_idx(loc_id, group_name, idx_type, order, n, HDF5Constants.H5O_INFO_ALL, lapl_id); + } + + /** + * H5Oget_info_by_idx retrieves the metadata for an object, identifying the object by an index position. + * + * @param loc_id + * IN: File or group identifier + * @param group_name + * IN: Name of group, relative to loc_id, in which object is located + * @param idx_type + * IN: Type of index by which objects are ordered + * @param order + * IN: Order of iteration within index + * @param n + * IN: Object to open + * @param fields + * IN: Object fields to select + * @param lapl_id + * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as + * H5P_DEFAULT.) + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native H5O_info_t H5Oget_info_by_idx(long loc_id, String group_name, int idx_type, - int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException; + int order, long n, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; /** * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name. @@ -4335,7 +4379,32 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ - public synchronized static native H5O_info_t H5Oget_info_by_name(long loc_id, String name, long lapl_id) + public static H5O_info_t H5Oget_info_by_name(long loc_id, String name, long lapl_id) + throws HDF5LibraryException, NullPointerException { + return H5Oget_info_by_name(loc_id, name, HDF5Constants.H5O_INFO_ALL, lapl_id); + } + + /** + * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name. + * + * @param loc_id + * IN: File or group identifier specifying location of group in which object is located + * @param name + * IN: Relative name of group + * @param fields + * IN: Object fields to select + * @param lapl_id + * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as + * H5P_DEFAULT.) + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public synchronized static native H5O_info_t H5Oget_info_by_name(long loc_id, String name, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -4412,8 +4481,68 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ + public static int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_cb op, H5O_iterate_t op_data) + throws HDF5LibraryException, NullPointerException { + return H5Ovisit(obj_id, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL); + } + + /** + * H5Ovisit recursively visits all objects accessible from a specified object. + * + * @param obj_id + * IN: Identifier of the object at which the recursive iteration begins. + * @param idx_type + * IN: Type of index + * @param order + * IN: Order of iteration within index + * @param op + * IN: Callback function passing data regarding the object to the calling application + * @param op_data + * IN: User-defined pointer to data required by the application for its processing of the object + * @param fields + * IN: Object fields to select + * + * @return returns the return value of the first operator that returns a positive value, or zero if all members were + * processed with no operator returning non-zero. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_cb op, - H5O_iterate_t op_data) throws HDF5LibraryException, NullPointerException; + H5O_iterate_t op_data, int fields) throws HDF5LibraryException, NullPointerException; + + /** + * H5Ovisit_by_name recursively visits all objects starting from a specified object. + * + * @param loc_id + * IN: File or group identifier + * @param obj_name + * IN: Relative path to the object + * @param idx_type + * IN: Type of index + * @param order + * IN: Order of iteration within index + * @param op + * IN: Callback function passing data regarding the object to the calling application + * @param op_data + * IN: User-defined pointer to data required by the application for its processing of the object + * @param lapl_id + * IN: Link access property list identifier + * + * @return returns the return value of the first operator that returns a positive value, or zero if all members were + * processed with no operator returning non-zero. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public static int H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order, + H5O_iterate_cb op, H5O_iterate_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException { + return H5Ovisit_by_name(loc_id, obj_name, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL, lapl_id); + } /** * H5Ovisit_by_name recursively visits all objects starting from a specified object. @@ -4430,6 +4559,8 @@ public class H5 implements java.io.Serializable { * IN: Callback function passing data regarding the object to the calling application * @param op_data * IN: User-defined pointer to data required by the application for its processing of the object + * @param fields + * IN: Object fields to select * @param lapl_id * IN: Link access property list identifier * @@ -4442,7 +4573,7 @@ public class H5 implements java.io.Serializable { * - name is null. **/ public synchronized static native int H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order, - H5O_iterate_cb op, H5O_iterate_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException; + H5O_iterate_cb op, H5O_iterate_t op_data, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; /** diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java index eb4055d..7eddac0 100644 --- a/java/src/hdf/hdf5lib/HDF5Constants.java +++ b/java/src/hdf/hdf5lib/HDF5Constants.java @@ -330,6 +330,12 @@ public class HDF5Constants { public static final int H5O_COPY_EXPAND_REFERENCE_FLAG = H5O_COPY_EXPAND_REFERENCE_FLAG(); public static final int H5O_COPY_WITHOUT_ATTR_FLAG = H5O_COPY_WITHOUT_ATTR_FLAG(); public static final int H5O_COPY_PRESERVE_NULL_FLAG = H5O_COPY_PRESERVE_NULL_FLAG(); + public static final int H5O_INFO_BASIC = H5O_INFO_BASIC(); + public static final int H5O_INFO_TIME = H5O_INFO_TIME(); + public static final int H5O_INFO_NUM_ATTRS = H5O_INFO_NUM_ATTRS(); + public static final int H5O_INFO_HDR = H5O_INFO_HDR(); + public static final int H5O_INFO_META_SIZE = H5O_INFO_META_SIZE(); + public static final int H5O_INFO_ALL = H5O_INFO_ALL(); public static final int H5O_SHMESG_NONE_FLAG = H5O_SHMESG_NONE_FLAG(); public static final int H5O_SHMESG_SDSPACE_FLAG = H5O_SHMESG_SDSPACE_FLAG(); public static final int H5O_SHMESG_DTYPE_FLAG = H5O_SHMESG_DTYPE_FLAG(); @@ -617,6 +623,7 @@ public class HDF5Constants { public static final long H5T_UNIX_D64LE = H5T_UNIX_D64LE(); public static final long H5T_VARIABLE = H5T_VARIABLE(); public static final int H5T_VLEN = H5T_VLEN(); + public static final int H5T_VL_T = H5T_VL_T(); public static final int H5Z_CB_CONT = H5Z_CB_CONT(); public static final int H5Z_CB_ERROR = H5Z_CB_ERROR(); public static final int H5Z_CB_FAIL = H5Z_CB_FAIL(); @@ -1239,6 +1246,18 @@ public class HDF5Constants { private static native final int H5O_COPY_PRESERVE_NULL_FLAG(); + private static native final int H5O_INFO_BASIC(); + + private static native final int H5O_INFO_TIME(); + + private static native final int H5O_INFO_NUM_ATTRS(); + + private static native final int H5O_INFO_HDR(); + + private static native final int H5O_INFO_META_SIZE(); + + private static native final int H5O_INFO_ALL(); + private static native final int H5O_SHMESG_NONE_FLAG(); private static native final int H5O_SHMESG_SDSPACE_FLAG(); @@ -1807,6 +1826,8 @@ public class HDF5Constants { private static native final int H5T_VLEN(); + private static native final int H5T_VL_T(); + private static native final int H5Z_CB_CONT(); private static native final int H5Z_CB_ERROR(); diff --git a/java/src/hdf/hdf5lib/HDFArray.java b/java/src/hdf/hdf5lib/HDFArray.java index 529aecb..30f0fc8 100644 --- a/java/src/hdf/hdf5lib/HDFArray.java +++ b/java/src/hdf/hdf5lib/HDFArray.java @@ -1025,8 +1025,11 @@ class ArrayDescriptor { NTsize = 8; } else if (css.startsWith("Ljava.lang.String")) { + NT = 'L'; + className = "java.lang.String"; + NTsize = 1; throw new HDF5JavaException(new String( - "ArrayDesciptor: Error: String array not supported yet")); + "ArrayDesciptor: Warning: String array not fully supported yet")); } else { /* diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c index 900316e..c99745d 100644 --- a/java/src/jni/h5Constants.c +++ b/java/src/jni/h5Constants.c @@ -643,6 +643,18 @@ Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1WITHOUT_1ATTR_1FLAG(JNIEnv *env, jclas JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1PRESERVE_1NULL_1FLAG(JNIEnv *env, jclass cls){return H5O_COPY_PRESERVE_NULL_FLAG; } JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1BASIC(JNIEnv *env, jclass cls) { return H5O_INFO_BASIC; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1TIME(JNIEnv *env, jclass cls) { return H5O_INFO_TIME; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1NUM_1ATTRS(JNIEnv *env, jclass cls) { return H5O_INFO_NUM_ATTRS; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1HDR(JNIEnv *env, jclass cls) { return H5O_INFO_HDR; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1META_1SIZE(JNIEnv *env, jclass cls) { return H5O_INFO_META_SIZE; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1ALL(JNIEnv *env, jclass cls) { return H5O_INFO_ALL; } +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1NONE_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_NONE_FLAG; } JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1SDSPACE_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_SDSPACE_FLAG; } @@ -1219,6 +1231,8 @@ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5T_1VARIABLE(JNIEnv *env, jclass cls) { return (int)H5T_VARIABLE; } JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5T_1VLEN(JNIEnv *env, jclass cls) { return H5T_VLEN; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5T_1VL_1T(JNIEnv *env, jclass cls) { return sizeof(hvl_t); } JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1CONT(JNIEnv *env, jclass cls) { return H5Z_CB_CONT; } diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c index 26ec4fc..13f5207 100644 --- a/java/src/jni/h5aImp.c +++ b/java/src/jni/h5aImp.c @@ -49,6 +49,10 @@ extern jobject visit_callback; /* Local Prototypes */ /********************/ +static herr_t H5AwriteVL_asstr (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf); +static herr_t H5AwriteVL_str (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf); +static herr_t H5AreadVL_asstr (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf); +static herr_t H5AreadVL_str (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf); static herr_t H5A_iterate_cb(hid_t g_id, const char *name, const H5A_info_t *info, void *op_data); @@ -178,7 +182,6 @@ Java_hdf_hdf5lib_H5_H5Aread } /* end if */ else { status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, byteP); - if (status < 0) { ENVPTR->ReleaseByteArrayElements(ENVPAR buf, byteP, JNI_ABORT); h5libraryError(env); @@ -194,6 +197,323 @@ Java_hdf_hdf5lib_H5_H5Aread /* * Class: hdf_hdf5lib_H5 + * Method: H5AwriteVL + * Signature: (JJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5AwriteVL + (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) +{ + herr_t status = -1; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; + + if (buf == NULL) { + h5nullArgument(env, "H5AwriteVL: buf is NULL"); + } /* end if */ + else { + isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING); + if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) { + unsigned i; + int nm = H5Tget_nmembers(mem_type_id); + for(i = 0; i <nm; i++) { + hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i); + isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) || + H5Tdetect_class((hid_t)nested_tid, H5T_VLEN); + H5Tclose(nested_tid); + } + } + else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) { + isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */ + } + if (isStr == 0 || isComplex>0 || isVlenStr) { + status = H5AwriteVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf); + } + else if (isStr > 0) { + status = H5AwriteVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf); + } + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Awrite_1VL */ + +herr_t +H5AwriteVL_str + (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +{ + herr_t status = -1; + char **wdata; + jsize size; + jint i; + + size = ENVPTR->GetArrayLength(ENVPAR (jarray) buf); + + wdata = (char**)HDcalloc((size_t)size + 1, sizeof(char*)); + if (!wdata) { + h5JNIFatalError(env, "H5AwriteVL_str: cannot allocate buffer"); + } /* end if */ + else { + HDmemset(wdata, 0, (size_t)size * sizeof(char*)); + for (i = 0; i < size; ++i) { + jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray) buf, i); + if (obj != 0) { + jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj); + const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0); + + if (utf8) { + wdata[i] = (char*)HDmalloc((size_t)length + 1); + if (wdata[i]) { + HDmemset(wdata[i], 0, ((size_t)length + 1)); + HDstrncpy(wdata[i], utf8, (size_t)length); + } /* end if */ + } /* end if */ + + ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8); + ENVPTR->DeleteLocalRef(ENVPAR obj); + } /* end if */ + } /* end for (i = 0; i < size; ++i) */ + + status = H5Awrite((hid_t)aid, (hid_t)tid, wdata); + + for (i = 0; i < size; i++) { + if(wdata[i]) { + HDfree(wdata[i]); + } /* end if */ + } /* end for */ + HDfree(wdata); + + if (status < 0) + h5libraryError(env); + } /* end else */ + + return (jint)status; +} + +herr_t +H5AwriteVL_asstr + (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +{ + char **strs; + jstring jstr; + jint i; + jint n; + hid_t sid; + hsize_t dims[H5S_MAX_RANK]; + herr_t status = -1; + + n = ENVPTR->GetArrayLength(ENVPAR buf); + strs =(hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t)); + + if (strs == NULL) { + h5JNIFatalError(env, "H5AwriteVL_asstr: failed to allocate buff for read variable length strings"); + } /* end if */ + else { + status = H5Awrite(aid, tid, strs); + + if (status < 0) { + dims[0] = (hsize_t)n; + sid = H5Screate_simple(1, dims, NULL); + H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, strs); + H5Sclose(sid); + HDfree(strs); + h5JNIFatalError(env, "H5AwriteVL_str: failed to read variable length strings"); + } /* end if */ + else { + for (i=0; i < n; i++) { + jstr = ENVPTR->NewStringUTF(ENVPAR strs[i]); + ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr); + H5free_memory (strs[i]); + } /* end for */ + + /* + for repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings, + H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect + free space in time. Instead, use "H5free_memory(strs[i])" above to free individual strings + after it is done. + H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, strs); + */ + + HDfree(strs); + } /* end else */ + } /* end else */ + + return status; +} /* end H5AwriteVL_str */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5AreadVL + * Signature: (JJJJJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5AreadVL + (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) +{ + herr_t status = -1; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; + + if (buf == NULL) { + h5nullArgument(env, "H5AreadVL: buf is NULL"); + } /* end if */ + else { + isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING); + if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) { + unsigned i; + int nm = H5Tget_nmembers(mem_type_id); + for(i = 0; i <nm; i++) { + hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i); + isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) || + H5Tdetect_class((hid_t)nested_tid, H5T_VLEN); + H5Tclose(nested_tid); + } + } + else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) { + isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */ + } + if (isStr == 0 || isComplex>0 || isVlenStr) { + status = H5AreadVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf); + } + else if (isStr > 0) { + status = H5AreadVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf); + } + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Aread_1VL */ + +herr_t +H5AreadVL_asstr + (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +{ + jint i; + jint n; + hid_t sid; + jstring jstr; + h5str_t h5str; + hvl_t *rdata; + hsize_t dims[H5S_MAX_RANK]; + size_t size; + size_t max_len = 0; + herr_t status = -1; + + /* Get size of string array */ + n = ENVPTR->GetArrayLength(ENVPAR buf); + /* we will need to read n number of hvl_t structures */ + rdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t)); + if (rdata == NULL) { + h5JNIFatalError(env, "H5AreadVL_asstr: failed to allocate buff for read"); + } /* end if */ + else { + status = H5Aread(aid, tid, rdata); + + if (status < 0) { + dims[0] = (hsize_t)n; + sid = H5Screate_simple(1, dims, NULL); + H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, rdata); + H5Sclose(sid); + HDfree(rdata); + h5JNIFatalError(env, "H5AreadVL_asstr: failed to read data"); + } /* end if */ + else { + /* calculate the largest size of all the hvl_t structures read */ + max_len = 1; + for (i=0; i < n; i++) { + if ((rdata + i)->len > max_len) + max_len = (rdata + i)->len; + } + + /* create one malloc to hold largest element */ + size = H5Tget_size(tid) * max_len; + HDmemset(&h5str, 0, sizeof(h5str_t)); + h5str_new(&h5str, 4 * size); + + if (h5str.s == NULL) { + dims[0] = (hsize_t)n; + sid = H5Screate_simple(1, dims, NULL); + H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, rdata); + H5Sclose(sid); + HDfree(rdata); + h5JNIFatalError(env, "H5AreadVL_asstr: failed to allocate buf"); + } /* end if */ + else { + H5T_class_t tclass = H5Tget_class(tid); + /* convert each element to char string */ + for (i=0; i < n; i++) { + h5str.s[0] = '\0'; + h5str_vlsprintf(&h5str, aid, tid, rdata+i, 0); + jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s); + ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr); + } /* end for */ + h5str_free(&h5str); + + dims[0] = (hsize_t)n; + sid = H5Screate_simple(1, dims, NULL); + H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, rdata); + H5Sclose(sid); + HDfree(rdata); + } /* end else */ + } /* end else */ + } /* end else */ + + return status; +} + +herr_t +H5AreadVL_str + (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +{ + char **strs; + jstring jstr; + jint i; + jint n; + hid_t sid; + hsize_t dims[H5S_MAX_RANK]; + herr_t status = -1; + + n = ENVPTR->GetArrayLength(ENVPAR buf); + strs =(char**)HDcalloc((size_t)n, sizeof(char*)); + + if (strs == NULL) { + h5JNIFatalError(env, "H5AreadVL_str: failed to allocate buff for read variable length strings"); + } /* end if */ + else { + status = H5Aread(aid, tid, strs); + + if (status < 0) { + dims[0] = (hsize_t)n; + sid = H5Screate_simple(1, dims, NULL); + H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, strs); + H5Sclose(sid); + HDfree(strs); + h5JNIFatalError(env, "H5AreadVL_str: failed to read variable length strings"); + } /* end if */ + else { + for (i=0; i < n; i++) { + jstr = ENVPTR->NewStringUTF(ENVPAR strs[i]); + ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr); + H5free_memory (strs[i]); + } /* end for */ + + /* + for repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings, + H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect + free space in time. Instead, use "H5free_memory(strs[i])" above to free individual strings + after it is done. + H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, strs); + */ + + HDfree(strs); + } /* end else */ + } /* end else */ + + return status; +} /* end H5AreadVL_str */ + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Aget_space * Signature: (J)J */ diff --git a/java/src/jni/h5aImp.h b/java/src/jni/h5aImp.h index 62769fd..f3758eb 100644 --- a/java/src/jni/h5aImp.h +++ b/java/src/jni/h5aImp.h @@ -69,6 +69,24 @@ Java_hdf_hdf5lib_H5_H5Aread /* * Class: hdf_hdf5lib_H5 + * Method: H5AwriteVL + * Signature: (JJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5AwriteVL + (JNIEnv *, jclass, jlong, jlong, jobjectArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5AreadVL + * Signature: (JJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5AreadVL + (JNIEnv *, jclass, jlong, jlong, jobjectArray); + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Aget_space * Signature: (J)J */ diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c index 9784055..cea6bb4 100644 --- a/java/src/jni/h5dImp.c +++ b/java/src/jni/h5dImp.c @@ -56,6 +56,7 @@ extern jobject visit_callback; static herr_t H5DreadVL_asstr (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); static herr_t H5DreadVL_str (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); static herr_t H5DreadVL_array (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); +static herr_t H5DwriteVL_asstr (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); static herr_t H5DwriteVL_str (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); static herr_t H5DwriteVL_array (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); @@ -993,96 +994,6 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1double /* * Class: hdf_hdf5lib_H5 - * Method: H5DreadVL - * Signature: (JJJJJ[Ljava/lang/String;)I - */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5DreadVL - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) -{ - herr_t status = -1; - htri_t isVlenStr=0; - - if (buf == NULL) { - h5nullArgument(env, "H5DreadVL: buf is NULL"); - } /* end if */ - else { - isVlenStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING); - - if (isVlenStr) - h5badArgument(env, "H5DreadVL: type is not variable length non-string"); - else - status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, - (hid_t)mem_space_id, (hid_t)file_space_id, - (hid_t)xfer_plist_id, buf); - } /* end else */ - - return (jint)status; -} /* end Java_hdf_hdf5lib_H5_H5Dread_1VL */ - -herr_t -H5DreadVL_asstr - (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf) -{ - jint i; - jint n; - jstring jstr; - h5str_t h5str; - hvl_t *rdata; - size_t size; - size_t max_len = 0; - herr_t status = -1; - - n = ENVPTR->GetArrayLength(ENVPAR buf); - rdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t)); - if (rdata == NULL) { - h5JNIFatalError(env, "H5DreadVL_notstr: failed to allocate buff for read"); - } /* end if */ - else { - status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, rdata); - - if (status < 0) { - H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata); - HDfree(rdata); - h5JNIFatalError(env, "H5DreadVL_notstr: failed to read data"); - } /* end if */ - else { - max_len = 1; - for (i=0; i < n; i++) { - if ((rdata + i)->len > max_len) - max_len = (rdata + i)->len; - } - - size = H5Tget_size(tid) * max_len; - HDmemset(&h5str, 0, sizeof(h5str_t)); - h5str_new(&h5str, 4 * size); - - if (h5str.s == NULL) { - H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata); - HDfree(rdata); - h5JNIFatalError(env, "H5DreadVL_notstr: failed to allocate buf"); - } /* end if */ - else { - for (i=0; i < n; i++) { - h5str.s[0] = '\0'; - h5str_sprintf(&h5str, did, tid, rdata+i, 0); - jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s); - ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr); - } /* end for */ - h5str_free(&h5str); - - H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata); - HDfree(rdata); - } /* end else */ - } /* end else */ - } /* end else */ - - return status; -} - -/* - * Class: hdf_hdf5lib_H5 * Method: H5Dread_string * Signature: (JJJJJ[Ljava/lang/String;)I */ @@ -1218,6 +1129,120 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Dwrite_1string */ +/* + * Class: hdf_hdf5lib_H5 + * Method: H5DreadVL + * Signature: (JJJJJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5DreadVL + (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, + jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) +{ + herr_t status = -1; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; + + if (buf == NULL) { + h5nullArgument(env, "H5DreadVL: buf is NULL"); + } /* end if */ + else { + isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING); + if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) { + unsigned i; + int nm = H5Tget_nmembers(mem_type_id); + for(i = 0; i <nm; i++) { + hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i); + isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) || + H5Tdetect_class((hid_t)nested_tid, H5T_VLEN); + H5Tclose(nested_tid); + } + } + else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) { + isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */ + } + if (isStr == 0 || isComplex>0 || isVlenStr) { + status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, + (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, buf); + } + else if (isStr > 0) { + status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, + (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, buf); + } + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Dread_1VL */ + +herr_t +H5DreadVL_asstr + (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf) +{ + jint i; + jint n; + jstring jstr; + h5str_t h5str; + hvl_t *rdata; + size_t size; + size_t max_len = 0; + herr_t status = -1; + + /* Get size of string array */ + n = ENVPTR->GetArrayLength(ENVPAR buf); + /* we will need to read n number of hvl_t structures */ + rdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t)); + if (rdata == NULL) { + h5JNIFatalError(env, "H5DreadVL_asstr: failed to allocate buff for read"); + } /* end if */ + else { + status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, rdata); + + if (status < 0) { + H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata); + HDfree(rdata); + h5JNIFatalError(env, "H5DreadVL_asstr: failed to read data"); + } /* end if */ + else { + /* calculate the largest size of all the hvl_t structures read */ + max_len = 1; + for (i=0; i < n; i++) { + if ((rdata + i)->len > max_len) + max_len = (rdata + i)->len; + } + + /* create one malloc to hold largest element */ + size = H5Tget_size(tid) * max_len; + HDmemset(&h5str, 0, sizeof(h5str_t)); + h5str_new(&h5str, 4 * size); + + if (h5str.s == NULL) { + H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata); + HDfree(rdata); + h5JNIFatalError(env, "H5DreadVL_asstr: failed to allocate buf"); + } /* end if */ + else { + H5T_class_t tclass = H5Tget_class(tid); + /* convert each element to char string */ + for (i=0; i < n; i++) { + h5str.s[0] = '\0'; + h5str_vlsprintf(&h5str, did, tid, rdata+i, 0); + jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s); + ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr); + } /* end for */ + h5str_free(&h5str); + + H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata); + HDfree(rdata); + } /* end else */ + } /* end else */ + } /* end else */ + + return status; +} + /** * Read VLEN data into array of arrays. * Object[] buf contains VL arrays of data points @@ -1305,6 +1330,104 @@ H5DreadVL_str /* * Class: hdf_hdf5lib_H5 + * Method: H5DwriteVL + * Signature: (JJJJJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5DwriteVL + (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, + jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) +{ + herr_t status = -1; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; + + if (buf == NULL) { + h5nullArgument(env, "H5DwriteVL: buf is NULL"); + } /* end if */ + else { + isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING); + if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) { + unsigned i; + int nm = H5Tget_nmembers(mem_type_id); + for(i = 0; i <nm; i++) { + hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i); + isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) || + H5Tdetect_class((hid_t)nested_tid, H5T_VLEN); + H5Tclose(nested_tid); + } + } + else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) { + isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */ + } + if (isStr == 0 || isComplex>0 || isVlenStr) { + status = H5DwriteVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, + (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, buf); + } + else if (isStr > 0) { + status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, + (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, buf); + } + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VL */ + +herr_t +H5DwriteVL_asstr + (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf) +{ + herr_t status = -1; + hvl_t *wdata; + jsize size; + jint i; + jint n; + + /* Get size of string array */ + n = ENVPTR->GetArrayLength(ENVPAR buf); + wdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t)); + + if (wdata == NULL) { + h5JNIFatalError(env, "H5DwriteVL_asstr: failed to allocate buff for write"); + } /* end if */ + else { + for (i = 0; i < n; ++i) { + jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray)buf, i); + if (obj != 0) { + jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj); + const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0); + + if (utf8) { + h5str_vlconvert(utf8, did, tid, wdata+i, 0); + } /* end if */ + + ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8); + ENVPTR->DeleteLocalRef(ENVPAR obj); + } /* end if */ + } /* end for (i = 0; i < size; ++i) */ + + status = H5Dwrite(did, tid, mem_sid, file_sid, xfer_plist_id, wdata); + + /* now free memory*/ + for (i = 0; i < n; i++) { + if(wdata+i) { + HDfree(wdata+i); + } /* end if */ + } /* end for */ + HDfree(wdata); + + if (status < 0) + h5libraryError(env); + } /* end else */ + + return status; +} /* end H5DwriteVL_asstr */ + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Dwrite_VLStrings * Signature: (JJJJJ[Ljava/lang/String;)I */ @@ -1347,7 +1470,7 @@ H5DwriteVL_str wdata = (char**)HDmalloc((size_t)size * sizeof (char*)); if (!wdata) { - h5JNIFatalError(env, "H5DwriteVL_string: cannot allocate buffer"); + h5JNIFatalError(env, "H5DwriteVL_str: cannot allocate buffer"); } /* end if */ else { HDmemset(wdata, 0, (size_t)size * sizeof(char*)); @@ -1433,7 +1556,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref h5str_new(&h5str, 1024); for (i=0; i<n; i++) { h5str.s[0] = '\0'; - h5str_sprintf(&h5str, did, tid, ref_data[i], 0); + h5str_sprintf(&h5str, did, tid, ref_data[i], 0, 0); jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s); ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr); diff --git a/java/src/jni/h5dImp.h b/java/src/jni/h5dImp.h index 3cf24fe..1fe71a8 100644 --- a/java/src/jni/h5dImp.h +++ b/java/src/jni/h5dImp.h @@ -213,6 +213,15 @@ Java_hdf_hdf5lib_H5_H5DreadVL /* * Class: hdf_hdf5lib_H5 + * Method: H5DwriteVL + * Signature: (JJJJJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5DwriteVL +(JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jobjectArray); + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Dread_string * Signature: (JJJJJ[Ljava/lang/String;)I */ diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c index e8abead..7665c70 100644 --- a/java/src/jni/h5oImp.c +++ b/java/src/jni/h5oImp.c @@ -105,11 +105,11 @@ Java_hdf_hdf5lib_H5_H5Ocopy /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_info - * Signature: (J)Lhdf/hdf5lib/structs/H5O_info_t; + * Signature: (JI)Lhdf/hdf5lib/structs/H5O_info_t; */ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1info - (JNIEnv *env, jclass clss, jlong loc_id) + (JNIEnv *env, jclass clss, jlong loc_id, jint fields) { herr_t status = -1; H5O_info_t infobuf; @@ -119,7 +119,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1info jobject ihinfobuf2; jobject ret_obj = NULL; - status = H5Oget_info((hid_t)loc_id, &infobuf); + status = H5Oget_info2((hid_t)loc_id, &infobuf, (unsigned)fields); if (status < 0) { h5libraryError(env); @@ -168,11 +168,11 @@ Java_hdf_hdf5lib_H5_H5Oget_1info /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_info_by_name - * Signature: (JLjava/lang/String;J)Lhdf/hdf5lib/structs/H5O_info_t; + * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_info_t; */ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) + (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint fields, jlong access_id) { const char *lName; herr_t status = -1; @@ -185,7 +185,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name PIN_JAVA_STRING(name, lName); if (lName != NULL) { - status = H5Oget_info_by_name((hid_t)loc_id, lName, &infobuf, (hid_t)access_id); + status = H5Oget_info_by_name2((hid_t)loc_id, lName, &infobuf, (unsigned)fields, (hid_t)access_id); UNPIN_JAVA_STRING(name, lName); @@ -237,12 +237,12 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_info_by_idx - * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5O_info_t; + * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_info_t; */ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx (JNIEnv *env, jclass clss, jlong loc_id, - jstring name, jint index_field, jint order, jlong link_n, jlong access_id) + jstring name, jint index_field, jint order, jlong link_n, jint fields, jlong access_id) { const char *lName; herr_t status; @@ -255,7 +255,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx PIN_JAVA_STRING(name, lName); if (lName != NULL) { - status = H5Oget_info_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id); + status = H5Oget_info_by_idx2((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (unsigned)fields, (hid_t)access_id); UNPIN_JAVA_STRING(name, lName); @@ -423,12 +423,12 @@ H5O_iterate_cb /* * Class: hdf_hdf5lib_H5 * Method: H5Ovisit - * Signature: (JIILjava/lang/Object;Ljava/lang/Object;)I + * Signature: (JIILjava/lang/Object;Ljava/lang/Object;I)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Ovisit (JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, - jobject callback_op, jobject op_data) + jobject callback_op, jobject op_data, jint fields) { herr_t status = -1; @@ -442,7 +442,7 @@ Java_hdf_hdf5lib_H5_H5Ovisit h5nullArgument(env, "H5Ovisit: callback_op is NULL"); } /* end if */ else { - status = H5Ovisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)op_data); + status = H5Ovisit2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)op_data, (unsigned)fields); if (status < 0) h5libraryError(env); @@ -454,12 +454,12 @@ Java_hdf_hdf5lib_H5_H5Ovisit /* * Class: hdf_hdf5lib_H5 * Method: H5Ovisit_by_name - * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;J)I + * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;IJ)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name (JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order, - jobject callback_op, jobject op_data, jlong access_id) + jobject callback_op, jobject op_data, jint fields, jlong access_id) { herr_t status = -1; const char *lName; @@ -478,7 +478,7 @@ Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name else { PIN_JAVA_STRING(name, lName); if (lName != NULL) { - status = H5Ovisit_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)op_data, (hid_t)access_id); + status = H5Ovisit_by_name2((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)op_data, (unsigned)fields, (hid_t)access_id); UNPIN_JAVA_STRING(name, lName); diff --git a/java/src/jni/h5oImp.h b/java/src/jni/h5oImp.h index 224f298..cb8c776 100644 --- a/java/src/jni/h5oImp.h +++ b/java/src/jni/h5oImp.h @@ -52,29 +52,29 @@ Java_hdf_hdf5lib_H5_H5Ocopy /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_info - * Signature: (J)Lhdf/hdf5lib/structs/H5O_info_t; + * Signature: (JI)Lhdf/hdf5lib/structs/H5O_info_t; */ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1info -(JNIEnv*, jclass, jlong); +(JNIEnv*, jclass, jlong, jint fields); /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_info_by_name - * Signature: (JLjava/lang/String;J)Lhdf/hdf5lib/structs/H5O_info_t; + * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_info_t; */ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name -(JNIEnv*, jclass, jlong, jstring, jlong); +(JNIEnv*, jclass, jlong, jstring, jint fields, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_info_by_idx - * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5O_info_t; + * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_info_t; */ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx -(JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jlong); +(JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jint fields, jlong); /* * Class: hdf_hdf5lib_H5 @@ -88,20 +88,20 @@ Java_hdf_hdf5lib_H5_H5Olink /* * Class: hdf_hdf5lib_H5 * Method: H5Ovisit - * Signature: (JIILjava/lang/Object;Ljava/lang/Object;)I + * Signature: (JIILjava/lang/Object;Ljava/lang/Object;I)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Ovisit - (JNIEnv*, jclass, jlong, jint, jint, jobject, jobject); + (JNIEnv*, jclass, jlong, jint, jint, jobject, jobject, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Ovisit_by_name - * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;J)I + * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;IJ)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name - (JNIEnv*, jclass, jlong, jstring, jint, jint, jobject, jobject, jlong); + (JNIEnv*, jclass, jlong, jstring, jint, jint, jobject, jobject, jint, jlong); /* * Class: hdf_hdf5lib_H5 diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c index 49cfeb9..3ff7436 100644 --- a/java/src/jni/h5pImp.c +++ b/java/src/jni/h5pImp.c @@ -5204,10 +5204,10 @@ Java_hdf_hdf5lib_H5_H5Pset_1append_1flush visit_callback = callback_op; if (op_data == NULL) { - h5nullArgument(env, "H5Ovisit: op_data is NULL"); + h5nullArgument(env, "H5Pset_append_flush: op_data is NULL"); } /* end if */ else if (callback_op == NULL) { - h5nullArgument(env, "H5Ovisit: callback_op is NULL"); + h5nullArgument(env, "H5Pset_append_flush: callback_op is NULL"); } /* end if */ else { status = H5Pset_append_flush((hid_t)plist_id, (unsigned)ndims, (const hsize_t*)boundary, (H5D_append_cb_t)H5D_append_cb, (void*)op_data); diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c index fdabd76..33dca7f 100644 --- a/java/src/jni/h5util.c +++ b/java/src/jni/h5util.c @@ -21,6 +21,7 @@ extern "C" { #endif /* __cplusplus */ +#include <jni.h> #include <stdio.h> #include <string.h> #include <stdlib.h> @@ -152,6 +153,513 @@ h5str_append return HDstrcat(str->s, cstr); } /* end h5str_append */ +/** print value of a vlen data point into string. + Return Value: + On success, the total number of characters printed is returned. + On error, a negative number is returned. + */ +size_t +h5str_vlconvert + (char *str, hid_t container, hid_t tid, hvl_t *ptr, int expand_data) +{ + unsigned char tmp_uchar = 0; + char tmp_char = 0; + unsigned short tmp_ushort = 0; + short tmp_short = 0; + unsigned int tmp_uint = 0; + int tmp_int = 0; + unsigned long tmp_ulong = 0; + long tmp_long = 0; + unsigned long long tmp_ullong = 0; + long long tmp_llong = 0; + float tmp_float = 0.0; + double tmp_double = 0.0; + long double tmp_ldouble = 0.0; + static char fmt_llong[8], fmt_ullong[8]; + + hid_t mtid = -1; + size_t offset; + size_t nll; + char *this_str; + size_t this_strlen; + int n; + H5T_class_t tclass = H5Tget_class(tid); + size_t size = H5Tget_size(tid); + H5T_sign_t nsign = H5Tget_sign(tid); + int bdata_print = 0; + + if (!str || !ptr) + return 0; + + this_str = NULL; + this_strlen = 0; + + switch (tclass) { + case H5T_COMPOUND: + { + unsigned i; + n = H5Tget_nmembers(tid); + + /* remove compound indicators */ + if (str[0] == ' ') + str++; + if (str[0] == '{') + str++; + + ptr->p = HDcalloc((size_t)1, size); + ptr->len = size; + for (i = 0; i < n; i++) { + offset = H5Tget_member_offset(tid, i); + mtid = H5Tget_member_type(tid, i); + str += offset; + h5str_convert(&str, container, mtid, ptr, 0, expand_data); + /* remove compound indicators */ + if (str[0] == ',') + str++; + if (str[0] == ' ') + str++; + H5Tclose(mtid); + } + /* remove compound indicators */ + if (str[0] == '}') + str++; + if (str[0] == ' ') + str++; + } + break; + case H5T_ARRAY: + { + int rank = 0; + hsize_t i, dims[H5S_MAX_RANK], total_elmts; + + /* remove array indicators */ + if (str[0] == '[') + str++; + if (str[0] == ' ') + str++; + + mtid = H5Tget_super(tid); + size = H5Tget_size(mtid); + rank = H5Tget_array_ndims(tid); + + H5Tget_array_dims2(tid, dims); + + total_elmts = 1; + for (i = 0; i < rank; i++) + total_elmts *= dims[i]; + + ptr->p = HDcalloc((size_t)total_elmts, size); + ptr->len = total_elmts; + h5str_convert(&str, container, mtid, ptr, 0, expand_data); + H5Tclose(mtid); + /* remove array indicators */ + if (str[0] == ' ') + str++; + if (str[0] == ']') + str++; + if (str[0] == ' ') + str++; + } + break; + default: + ptr->len = size; + ptr->p = HDcalloc(1, size); + this_strlen = h5str_convert(&str, container, tid, ptr, 0, expand_data); + break; + } /* end switch */ + + return this_strlen; +} /* end h5str_vlconvert */ + +/** print value of a data point into string. + Return Value: + On success, the total number of characters printed is returned. + On error, a negative number is returned. + */ +size_t +h5str_convert + (char **str, hid_t container, hid_t tid, hvl_t *ptr, int ptroffset, int expand_data) +{ + unsigned char tmp_uchar = 0; + char tmp_char = 0; + unsigned short tmp_ushort = 0; + short tmp_short = 0; + unsigned int tmp_uint = 0; + int tmp_int = 0; + unsigned long tmp_ulong = 0; + long tmp_long = 0; + unsigned long long tmp_ullong = 0; + long long tmp_llong = 0; + float tmp_float = 0.0; + double tmp_double = 0.0; + long double tmp_ldouble = 0.0; + static char fmt_llong[8], fmt_ullong[8]; + const char delimiter[] = " ,}]"; + + char *token; + hid_t mtid = -1; + size_t offset; + size_t nll; + char *this_str = *str; + size_t this_strlen; + int n; + char *cptr = ((char*) ((hvl_t *) ptr)->p) + ptroffset; + unsigned char *ucptr = ((unsigned char*) ((hvl_t *) ptr)->p) + ptroffset; + H5T_class_t tclass = H5Tget_class(tid); + size_t size = H5Tget_size(tid); + H5T_sign_t nsign = H5Tget_sign(tid); + int bdata_print = 0; + + if (!str || !ptr) + return 0; + + /* Build default formats for long long types */ + if (!fmt_llong[0]) { + sprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH); + sprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH); + } /* end if */ + + this_strlen = HDstrlen(this_str); + + switch (tclass) { + case H5T_FLOAT: + token = HDstrtok (this_str, delimiter); + if (sizeof(float) == size) { + /* if (H5Tequal(tid, H5T_NATIVE_FLOAT)) */ + tmp_float = 0; + sscanf(token, "%f", &tmp_float); + HDmemcpy(cptr, &tmp_float, sizeof(float)); + } + else if (sizeof(double) == size) { + /* if (H5Tequal(tid, H5T_NATIVE_DOUBLE)) */ + tmp_double = 0; + sscanf(token, "%%lf", &tmp_double); + HDmemcpy(cptr, &tmp_double, sizeof(double)); + } +#if H5_SIZEOF_LONG_DOUBLE !=0 + else if (sizeof(long double) == size) { + /* if (H5Tequal(tid, H5T_NATIVE_LDOUBLE)) */ + tmp_ldouble = 0; + sscanf(token, "%Lf", &tmp_ldouble); + HDmemcpy(cptr, &tmp_ldouble, sizeof(long double)); + } +#endif + break; + case H5T_STRING: + { + if (this_strlen > 0) { + HDstrncpy(cptr, this_str, size); + } + else { + cptr = NULL; + } + } + break; + case H5T_INTEGER: + token = HDstrtok (this_str, delimiter); + if (sizeof(char) == size) { + if(H5T_SGN_NONE == nsign) { + /* if (H5Tequal(tid, H5T_NATIVE_UCHAR)) */ + tmp_uchar = 0; + sscanf(token, "%hu", &tmp_uchar); + HDmemcpy(cptr, &tmp_uchar, sizeof(unsigned char)); + } + else { + /* if (H5Tequal(tid, H5T_NATIVE_SCHAR)) */ + tmp_char = 0; + sscanf(token, "%hd", &tmp_char); + HDmemcpy(cptr, &tmp_char, sizeof(char)); + } + } + else if (sizeof(int) == size) { + if(H5T_SGN_NONE == nsign) { + /* if (H5Tequal(tid, H5T_NATIVE_UINT)) */ + tmp_uint = 0; + sscanf(token, "%u", &tmp_uint); + HDmemcpy(cptr, &tmp_uint, sizeof(unsigned int)); + } + else { + /* if (H5Tequal(tid, H5T_NATIVE_INT)) */ + tmp_int = 0; + sscanf(token, "%d", &tmp_int); + HDmemcpy(cptr, &tmp_int, sizeof(int)); + } + } + else if (sizeof(short) == size) { + if(H5T_SGN_NONE == nsign) { + /* if (H5Tequal(tid, H5T_NATIVE_USHORT)) */ + tmp_ushort = 0; + sscanf(token, "%u", &tmp_ushort); + HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short)); + } + else { + /* if (H5Tequal(tid, H5T_NATIVE_SHORT)) */ + tmp_short = 0; + sscanf(token, "%d", &tmp_short); + HDmemcpy(&tmp_short, cptr, sizeof(short)); + } + } + else if (sizeof(long) == size) { + if(H5T_SGN_NONE == nsign) { + /* if (H5Tequal(tid, H5T_NATIVE_ULONG)) */ + tmp_ulong = 0; + sscanf(token, "%lu", &tmp_ulong); + HDmemcpy(cptr, &tmp_ulong, sizeof(unsigned long)); + } + else { + /* if (H5Tequal(tid, H5T_NATIVE_LONG)) */ + tmp_long = 0; + sscanf(token, "%ld", &tmp_long); + HDmemcpy(cptr, &tmp_long, sizeof(long)); + } + } + else if (sizeof(long long) == size) { + if(H5T_SGN_NONE == nsign) { + /* if (H5Tequal(tid, H5T_NATIVE_ULLONG)) */ + tmp_ullong = 0; + sscanf(token, fmt_ullong, &tmp_ullong); + HDmemcpy(cptr, &tmp_ullong, sizeof(unsigned long long)); + } + else { + /* if (H5Tequal(tid, H5T_NATIVE_LLONG)) */ + tmp_llong = 0; + sscanf(token, fmt_llong, &tmp_llong); + HDmemcpy(cptr, &tmp_llong, sizeof(long long)); + } + } + break; + case H5T_COMPOUND: + { + unsigned i; + n = H5Tget_nmembers(tid); + /* remove compound indicators */ + if ((*str)[0] == ' ') + (*str)++; + if ((*str)[0] == '{') + (*str)++; + + for (i = 0; i < n; i++) { + offset = H5Tget_member_offset(tid, i); + mtid = H5Tget_member_type(tid, i); + h5str_convert(str, container, mtid, ptr, offset, expand_data); + /* remove compound indicators */ + if ((*str)[0] == ',') + (*str)++; + if ((*str)[0] == ' ') + (*str)++; + H5Tclose(mtid); + } + /* remove compound indicators */ + if ((*str)[0] == '}') + (*str)++; + if ((*str)[0] == ' ') + (*str)++; + } + break; + case H5T_ENUM: + { + char enum_name[1024]; + void *value; + if (sizeof(char) == size) { + tmp_uchar = 0; + value = &tmp_uchar; + } + else if (sizeof(short) == size) { + tmp_ushort = 0; + value = &tmp_ushort; + } + else if (sizeof(long) == size) { + tmp_ulong = 0; + value = &tmp_ulong; + } + else if (sizeof(long long) == size) { + tmp_ullong = 0; + value = &tmp_ullong; + } + else { + tmp_uint = 0; + value = &tmp_uint; + } + token = HDstrtok (this_str, delimiter); + H5Tenum_valueof(tid, token, value); + HDmemcpy(ucptr, value, size); + } + break; + case H5T_REFERENCE: + /* TODO handle reference writing */ + cptr = NULL; + break; + case H5T_ARRAY: + { + int rank = 0; + hsize_t i, dims[H5S_MAX_RANK], total_elmts; + /* remove array indicators */ + if ((*str)[0] == '[') + (*str)++; + if ((*str)[0] == ' ') + (*str)++; + + mtid = H5Tget_super(tid); + offset = H5Tget_size(mtid); + rank = H5Tget_array_ndims(tid); + + H5Tget_array_dims2(tid, dims); + + total_elmts = 1; + for (i = 0; i < rank; i++) + total_elmts *= dims[i]; + + cptr = HDcalloc((size_t)total_elmts, offset); + for (i = 0; i < total_elmts; i++) { + h5str_convert(str, container, mtid, cptr + (i*offset), offset, expand_data); + /* remove array indicators */ + if ((*str)[0] == ',') + (*str)++; + if ((*str)[0] == ' ') + (*str)++; + } + H5Tclose(mtid); + /* remove array indicators */ + if ((*str)[0] == ' ') + (*str)++; + if ((*str)[0] == ']') + (*str)++; + if ((*str)[0] == ' ') + (*str)++; + } + break; + case H5T_VLEN: + { + unsigned int i; + mtid = H5Tget_super(tid); + offset = H5Tget_size(mtid); + + /* remove vlen indicators */ + if ((*str)[0] == '{') + (*str)++; + cptr = HDcalloc(offset, sizeof(hvl_t)); + for (i = 0; (i*offset) < (int)size; i++) { + h5str_convert(str, container, mtid, cptr + (i*offset), offset, expand_data); + /* remove vlen indicators */ + if ((*str)[0] == ',') + (*str)++; + if ((*str)[0] == ' ') + (*str)++; + if ((*str)[0] == '}') + break; + } + H5Tclose(mtid); + /* remove vlen indicators */ + if ((*str)[0] == '}') + (*str)++; + } + break; + + default: + { + /* All other types get copied raw */ + HDmemcpy(ucptr, this_str, size); + } + break; + } /* end switch */ + + return this_strlen; +} /* end h5str_convert */ + +/** print value of a vlen data point into string. + Return Value: + On success, the total number of characters printed is returned. + On error, a negative number is returned. + */ +size_t +h5str_vlsprintf + (h5str_t *str, hid_t container, hid_t tid, hvl_t *ptr, int expand_data) +{ + unsigned char tmp_uchar = 0; + char tmp_char = 0; + unsigned short tmp_ushort = 0; + short tmp_short = 0; + unsigned int tmp_uint = 0; + int tmp_int = 0; + unsigned long tmp_ulong = 0; + long tmp_long = 0; + unsigned long long tmp_ullong = 0; + long long tmp_llong = 0; + float tmp_float = 0.0; + double tmp_double = 0.0; + long double tmp_ldouble = 0.0; + static char fmt_llong[8], fmt_ullong[8]; + + hid_t mtid = -1; + size_t offset; + size_t nll; + char *this_str; + size_t this_strlen; + int n; + H5T_class_t tclass = H5Tget_class(tid); + size_t size = H5Tget_size(tid); + H5T_sign_t nsign = H5Tget_sign(tid); + int bdata_print = 0; + + if (!str || !ptr) + return 0; + + /* Build default formats for long long types */ + if (!fmt_llong[0]) { + sprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH); + sprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH); + } /* end if */ + + this_str = NULL; + this_strlen = 0; + + switch (tclass) { + case H5T_COMPOUND: + { + unsigned i; + n = H5Tget_nmembers(tid); + h5str_append(str, " {"); + + for (i = 0; i < n; i++) { + offset = H5Tget_member_offset(tid, i); + mtid = H5Tget_member_type(tid, i); + h5str_sprintf(str, container, mtid, ((char *) (ptr->p)) + offset, ptr->len, expand_data); + if ((i + 1) < n) + h5str_append(str, ", "); + H5Tclose(mtid); + } + h5str_append(str, "} "); + } + break; + case H5T_ARRAY: + { + int rank = 0; + hsize_t i, dims[H5S_MAX_RANK], total_elmts; + h5str_append(str, "[ "); + + mtid = H5Tget_super(tid); + size = H5Tget_size(mtid); + rank = H5Tget_array_ndims(tid); + + H5Tget_array_dims2(tid, dims); + + total_elmts = 1; + for (i = 0; i < rank; i++) + total_elmts *= dims[i]; + + h5str_sprintf(str, container, mtid, ((char *) (ptr->p)), ptr->len, expand_data); + H5Tclose(mtid); + h5str_append(str, " ] "); + } + break; + default: + this_strlen = h5str_sprintf(str, container, tid, ((char *) (ptr->p)), ptr->len, expand_data); + break; + } /* end switch */ + + return this_strlen; +} /* end h5str_vlsprintf */ + /** print value of a data point into string. Return Value: On success, the total number of characters printed is returned. @@ -159,7 +667,7 @@ h5str_append */ size_t h5str_sprintf - (h5str_t *str, hid_t container, hid_t tid, void *ptr, int expand_data) + (h5str_t *str, hid_t container, hid_t tid, void *ptr, int ptr_len, int expand_data) { unsigned char tmp_uchar = 0; char tmp_char = 0; @@ -182,9 +690,8 @@ h5str_sprintf char *this_str; size_t this_strlen; int n; - hvl_t *vlptr; - char *cptr = (char*) ptr; - unsigned char *ucptr = (unsigned char*) ptr; + char *cptr = (char*) (ptr); + unsigned char *ucptr = (unsigned char*) (ptr); H5T_class_t tclass = H5Tget_class(tid); size_t size = H5Tget_size(tid); H5T_sign_t nsign = H5Tget_sign(tid); @@ -206,20 +713,20 @@ h5str_sprintf case H5T_FLOAT: if (sizeof(float) == size) { /* if (H5Tequal(tid, H5T_NATIVE_FLOAT)) */ - HDmemcpy(&tmp_float, ptr, sizeof(float)); + HDmemcpy(&tmp_float, cptr, sizeof(float)); this_str = (char*)HDmalloc(25); sprintf(this_str, "%g", tmp_float); } else if (sizeof(double) == size) { /* if (H5Tequal(tid, H5T_NATIVE_DOUBLE)) */ - HDmemcpy(&tmp_double, ptr, sizeof(double)); + HDmemcpy(&tmp_double, cptr, sizeof(double)); this_str = (char*)HDmalloc(25); sprintf(this_str, "%g", tmp_double); } #if H5_SIZEOF_LONG_DOUBLE !=0 else if (sizeof(long double) == size) { /* if (H5Tequal(tid, H5T_NATIVE_LDOUBLE)) */ - HDmemcpy(&tmp_ldouble, ptr, sizeof(long double)); + HDmemcpy(&tmp_ldouble, cptr, sizeof(long double)); this_str = (char*)HDmalloc(27); sprintf(this_str, "%Lf", tmp_ldouble); } @@ -256,13 +763,13 @@ h5str_sprintf if (sizeof(char) == size) { if(H5T_SGN_NONE == nsign) { /* if (H5Tequal(tid, H5T_NATIVE_UCHAR)) */ - HDmemcpy(&tmp_uchar, ptr, sizeof(unsigned char)); + HDmemcpy(&tmp_uchar, cptr, sizeof(unsigned char)); this_str = (char*)HDmalloc(7); sprintf(this_str, "%u", tmp_uchar); } else { /* if (H5Tequal(tid, H5T_NATIVE_SCHAR)) */ - HDmemcpy(&tmp_char, ptr, sizeof(char)); + HDmemcpy(&tmp_char, cptr, sizeof(char)); this_str = (char*)HDmalloc(7); sprintf(this_str, "%hhd", tmp_char); } @@ -270,13 +777,13 @@ h5str_sprintf else if (sizeof(int) == size) { if(H5T_SGN_NONE == nsign) { /* if (H5Tequal(tid, H5T_NATIVE_UINT)) */ - HDmemcpy(&tmp_uint, ptr, sizeof(unsigned int)); + HDmemcpy(&tmp_uint, cptr, sizeof(unsigned int)); this_str = (char*)HDmalloc(14); sprintf(this_str, "%u", tmp_uint); } else { /* if (H5Tequal(tid, H5T_NATIVE_INT)) */ - HDmemcpy(&tmp_int, ptr, sizeof(int)); + HDmemcpy(&tmp_int, cptr, sizeof(int)); this_str = (char*)HDmalloc(14); sprintf(this_str, "%d", tmp_int); } @@ -284,13 +791,13 @@ h5str_sprintf else if (sizeof(short) == size) { if(H5T_SGN_NONE == nsign) { /* if (H5Tequal(tid, H5T_NATIVE_USHORT)) */ - HDmemcpy(&tmp_ushort, ptr, sizeof(unsigned short)); + HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short)); this_str = (char*)HDmalloc(9); sprintf(this_str, "%u", tmp_ushort); } else { /* if (H5Tequal(tid, H5T_NATIVE_SHORT)) */ - HDmemcpy(&tmp_short, ptr, sizeof(short)); + HDmemcpy(&tmp_short, cptr, sizeof(short)); this_str = (char*)HDmalloc(9); sprintf(this_str, "%d", tmp_short); } @@ -298,13 +805,13 @@ h5str_sprintf else if (sizeof(long) == size) { if(H5T_SGN_NONE == nsign) { /* if (H5Tequal(tid, H5T_NATIVE_ULONG)) */ - HDmemcpy(&tmp_ulong, ptr, sizeof(unsigned long)); + HDmemcpy(&tmp_ulong, cptr, sizeof(unsigned long)); this_str = (char*)HDmalloc(23); sprintf(this_str, "%lu", tmp_ulong); } else { /* if (H5Tequal(tid, H5T_NATIVE_LONG)) */ - HDmemcpy(&tmp_long, ptr, sizeof(long)); + HDmemcpy(&tmp_long, cptr, sizeof(long)); this_str = (char*)HDmalloc(23); sprintf(this_str, "%ld", tmp_long); } @@ -312,13 +819,13 @@ h5str_sprintf else if (sizeof(long long) == size) { if(H5T_SGN_NONE == nsign) { /* if (H5Tequal(tid, H5T_NATIVE_ULLONG)) */ - HDmemcpy(&tmp_ullong, ptr, sizeof(unsigned long long)); + HDmemcpy(&tmp_ullong, cptr, sizeof(unsigned long long)); this_str = (char*)HDmalloc(25); sprintf(this_str, fmt_ullong, tmp_ullong); } else { /* if (H5Tequal(tid, H5T_NATIVE_LLONG)) */ - HDmemcpy(&tmp_llong, ptr, sizeof(long long)); + HDmemcpy(&tmp_llong, cptr, sizeof(long long)); this_str = (char*)HDmalloc(25); sprintf(this_str, fmt_llong, tmp_llong); } @@ -333,8 +840,8 @@ h5str_sprintf for (i = 0; i < n; i++) { offset = H5Tget_member_offset(tid, i); mtid = H5Tget_member_type(tid, i); - h5str_sprintf(str, container, mtid, cptr + offset, expand_data); - if (i < n - 1) + h5str_sprintf(str, container, mtid, cptr + offset, ptr_len, expand_data); + if ((i + 1) < n) h5str_append(str, ", "); H5Tclose(mtid); } @@ -344,7 +851,7 @@ h5str_sprintf case H5T_ENUM: { char enum_name[1024]; - if (H5Tenum_nameof(tid, ptr, enum_name, sizeof enum_name) >= 0) { + if (H5Tenum_nameof(tid, cptr, enum_name, sizeof enum_name) >= 0) { h5str_append(str, enum_name); } else { @@ -363,7 +870,7 @@ h5str_sprintf } break; case H5T_REFERENCE: - if (h5str_is_zero(ptr, size)) { + if (h5str_is_zero(cptr, size)) { h5str_append(str, "NULL"); } else { @@ -379,9 +886,9 @@ h5str_sprintf H5S_sel_type region_type; /* get name of the dataset the region reference points to using H5Rget_name */ - region_obj = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, ptr); + region_obj = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, cptr); if (region_obj >= 0) { - region = H5Rget_region(container, H5R_DATASET_REGION, ptr); + region = H5Rget_region(container, H5R_DATASET_REGION, cptr); if (region >= 0) { if(expand_data) { region_type = H5Sget_select_type(region); @@ -393,7 +900,7 @@ h5str_sprintf } } else { - if(H5Rget_name(region_obj, H5R_DATASET_REGION, ptr, (char*)ref_name, 1024) >= 0) { + if(H5Rget_name(region_obj, H5R_DATASET_REGION, cptr, (char*)ref_name, 1024) >= 0) { h5str_append(str, ref_name); } @@ -424,8 +931,8 @@ h5str_sprintf hid_t obj; this_str = (char*)HDmalloc(64); - obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, ptr); - H5Oget_info(obj, &oi); + obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, cptr); + H5Oget_info2(obj, &oi, H5O_INFO_ALL); /* Print object data and close object */ sprintf(this_str, "%u-%lu", (unsigned) oi.type, oi.addr); @@ -450,31 +957,30 @@ h5str_sprintf total_elmts *= dims[i]; for (i = 0; i < total_elmts; i++) { - h5str_sprintf(str, container, mtid, cptr + i * size, expand_data); - if (i < total_elmts - 1) + h5str_sprintf(str, container, mtid, cptr + i * size, ptr_len, expand_data); + if ((i + 1) < total_elmts) h5str_append(str, ", "); } H5Tclose(mtid); - h5str_append(str, "] "); + h5str_append(str, " ] "); } break; case H5T_VLEN: - { - unsigned int i; - mtid = H5Tget_super(tid); - size = H5Tget_size(mtid); - - vlptr = (hvl_t *) cptr; - - nll = vlptr->len; - for (i = 0; i < (int)nll; i++) { - h5str_sprintf(str, container, mtid, ((char *) (vlptr->p)) + i * size, expand_data); - if (i < (int)nll - 1) - h5str_append(str, ", "); + { + unsigned int i; + mtid = H5Tget_super(tid); + size = H5Tget_size(mtid); + + h5str_append(str, "{"); + for (i = 0; i < (int)ptr_len; i++) { + h5str_sprintf(str, container, mtid, cptr + i * size, ptr_len, expand_data); + if ((i + 1) < (int)ptr_len) + h5str_append(str, ", "); + } + H5Tclose(mtid); + h5str_append(str, "}"); } - H5Tclose(mtid); - } - break; + break; default: { @@ -563,7 +1069,7 @@ h5str_print_region_data_blocks if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) >= 0) { if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) { for (numindex = 0; numindex < numelem; numindex++) { - h5str_sprintf(str, region_id, type_id, ((char*)region_buf + numindex * type_size), 1); + h5str_sprintf(str, region_id, type_id, ((char*)region_buf + numindex * type_size), 0, 1); if (numindex + 1 < numelem) h5str_append(str, ", "); @@ -763,7 +1269,7 @@ h5str_print_region_data_points for (jndx = 0; jndx < npoints; jndx++) { if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) { - h5str_sprintf(str, region_id, type_id, ((char*)region_buf + jndx * type_size), 1); + h5str_sprintf(str, region_id, type_id, ((char*)region_buf + jndx * type_size), 0, 1); if (jndx + 1 < npoints) h5str_append(str, ", "); @@ -1883,7 +2389,7 @@ h5tools_dump_simple_data /* Render the data element*/ h5str_new(&buffer, 32 * size); - bytes_in = h5str_sprintf(&buffer, container, type, memref, 1); + bytes_in = h5str_sprintf(&buffer, container, type, memref, 0, 1); if(i > 0) { HDfprintf(stream, ", "); if (line_count >= H5TOOLS_TEXT_BLOCK) { @@ -1909,116 +2415,6 @@ h5tools_dump_simple_data /* * Class: hdf_hdf5lib_H5 - * Method: H5AwriteVL - * Signature: (JJ[Ljava/lang/String;)I - */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AwriteVL - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) -{ - herr_t status = -1; - char **wdata; - jsize size; - jint i; - - size = ENVPTR->GetArrayLength(ENVPAR (jarray) buf); - - wdata = (char**)HDcalloc((size_t)size + 1, sizeof(char*)); - if (!wdata) { - h5JNIFatalError(env, "H5AwriteVL: cannot allocate buffer"); - } /* end if */ - else { - HDmemset(wdata, 0, (size_t)size * sizeof(char*)); - for (i = 0; i < size; ++i) { - jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray) buf, i); - if (obj != 0) { - jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj); - const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0); - - if (utf8) { - wdata[i] = (char*)HDmalloc((size_t)length + 1); - if (wdata[i]) { - HDmemset(wdata[i], 0, ((size_t)length + 1)); - HDstrncpy(wdata[i], utf8, (size_t)length); - } /* end if */ - } /* end if */ - - ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8); - ENVPTR->DeleteLocalRef(ENVPAR obj); - } /* end if */ - } /* end for (i = 0; i < size; ++i) */ - - status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, wdata); - - for (i = 0; i < size; i++) { - if(wdata[i]) { - HDfree(wdata[i]); - } /* end if */ - } /* end for */ - HDfree(wdata); - - if (status < 0) - h5libraryError(env); - } /* end else */ - - return (jint)status; -} /* end Java_hdf_hdf5lib_H5_H5AwriteVL */ - -/* - * Class: hdf_hdf5lib_H5 - * Method: H5AreadVL - * Signature: (JJ[Ljava/lang/String;)I - */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AreadVL - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) -{ - herr_t status = -1; - jstring jstr; - char **strs; - int i, n; - hid_t sid; - hsize_t dims[H5S_MAX_RANK]; - - n = ENVPTR->GetArrayLength(ENVPAR buf); - - strs =(char **)HDmalloc((size_t)n * sizeof(char *)); - if (strs == NULL) { - h5JNIFatalError( env, "H5AreadVL: failed to allocate buff for read variable length strings"); - } /* end if */ - else { - status = H5Aread(attr_id, mem_type_id, strs); - if (status < 0) { - dims[0] = (hsize_t)n; - sid = H5Screate_simple(1, dims, NULL); - H5Dvlen_reclaim(mem_type_id, sid, H5P_DEFAULT, strs); - H5Sclose(sid); - HDfree(strs); - h5JNIFatalError(env, "H5AreadVL: failed to read variable length strings"); - } /* end if */ - else { - for (i=0; i<n; i++) { - jstr = ENVPTR->NewStringUTF(ENVPAR strs[i]); - ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr); - HDfree (strs[i]); - } /* end for */ - - /* - for repeatedly reading an attribute with a large number of strs (e.g., 1,000,000 strings, - H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect - free space in time. Instead, use "free(strs[i])" to free individual strings - after it is done. - H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, strs); - */ - - HDfree(strs); - } /* end else */ - } /* end else */ - return status; -} /* end Java_hdf_hdf5lib_H5_H5AreadVL */ - -/* - * Class: hdf_hdf5lib_H5 * Method: H5AreadComplex * Signature: (JJ[Ljava/lang/String;)I */ @@ -2059,7 +2455,7 @@ Java_hdf_hdf5lib_H5_H5AreadComplex else { for (i = 0; i < n; i++) { h5str.s[0] = '\0'; - h5str_sprintf(&h5str, attr_id, mem_type_id, rdata + ((size_t)i * size), 0); + h5str_sprintf(&h5str, attr_id, mem_type_id, rdata + ((size_t)i * size), 0, 0); jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s); ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr); } /* end for */ @@ -2552,7 +2948,7 @@ obj_info_all info_all_t *datainfo = (info_all_t*)op_data; H5O_info_t object_info; - retVal = H5Oget_info_by_name(loc_id, name, &object_info, H5P_DEFAULT); + retVal = H5Oget_info_by_name2(loc_id, name, &object_info, H5O_INFO_ALL, H5P_DEFAULT); if (retVal < 0) { *(datainfo->otype+datainfo->count) = -1; @@ -2591,7 +2987,7 @@ obj_info_max info_all_t *datainfo = (info_all_t*)op_data; H5O_info_t object_info; - retVal = H5Oget_info(loc_id, &object_info); + retVal = H5Oget_info2(loc_id, &object_info, H5O_INFO_ALL); if (retVal < 0) { *(datainfo->otype+datainfo->count) = -1; *(datainfo->ltype+datainfo->count) = -1; diff --git a/java/src/jni/h5util.h b/java/src/jni/h5util.h index 434a107..23bc424 100644 --- a/java/src/jni/h5util.h +++ b/java/src/jni/h5util.h @@ -39,7 +39,10 @@ extern void h5str_new (h5str_t *str, size_t len); extern void h5str_free (h5str_t *str); extern void h5str_resize (h5str_t *str, size_t new_len); extern char* h5str_append (h5str_t *str, const char* cstr); -extern size_t h5str_sprintf(h5str_t *str, hid_t container, hid_t tid, void *buf, int expand_data); +extern size_t h5str_vlsprintf(h5str_t *str, hid_t container, hid_t tid, hvl_t *buf, int expand_data); +extern size_t h5str_sprintf(h5str_t *str, hid_t container, hid_t tid, void *buf, int ptrlen, int expand_data); +extern size_t h5str_vlsconvert(char *str, hid_t container, hid_t tid, hvl_t *buf, int expand_data); +extern size_t h5str_convert(char **str, hid_t container, hid_t tid, hvl_t *buf, int ptroffset, int expand_data); extern void h5str_array_free(char **strs, size_t len); extern int h5str_dump_simple_dset(FILE *stream, hid_t dset, int binary_order); extern int h5str_dump_region_blocks_data(h5str_t *str, hid_t region, hid_t region_obj); @@ -47,24 +50,6 @@ extern int h5str_dump_region_points_data(h5str_t *str, hid_t region, hid_t r /* * Class: hdf_hdf5lib_H5 - * Method: H5AwriteVL - * Signature: (JJ[Ljava/lang/String;)I - */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AwriteVL - (JNIEnv *, jclass, jlong, jlong, jobjectArray); - -/* - * Class: hdf_hdf5lib_H5 - * Method: H5AreadVL - * Signature: (JJ[Ljava/lang/String;)I - */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AreadVL - (JNIEnv *, jclass, jlong, jlong, jobjectArray); - -/* - * Class: hdf_hdf5lib_H5 * Method: H5AreadComplex * Signature: (JJ[Ljava/lang/String;)I */ diff --git a/java/test/CMakeLists.txt b/java/test/CMakeLists.txt index 5cded3b..b76f572 100644 --- a/java/test/CMakeLists.txt +++ b/java/test/CMakeLists.txt @@ -6,96 +6,79 @@ set (CMAKE_VERBOSE_MAKEFILE 1) set_directory_properties(PROPERTIES INCLUDE_DIRECTORIES "${HDF5_JAVA_JNI_BINARY_DIR};${HDF5_JAVA_HDF5_LIB_DIR}") set (HDF5_JAVA_TEST_SOURCES - TestH5.java - TestH5Eparams.java - TestH5Eregister.java - TestH5Fparams.java - TestH5Fbasic.java - TestH5F.java - TestH5Fswmr.java - TestH5Gbasic.java - TestH5G.java - TestH5Sbasic.java - TestH5S.java - TestH5Tparams.java - TestH5Tbasic.java - TestH5T.java - TestH5Dparams.java - TestH5D.java - TestH5Dplist.java - TestH5Lparams.java - TestH5Lbasic.java - TestH5Lcreate.java - TestH5R.java - TestH5P.java - TestH5PData.java - TestH5Pfapl.java - TestH5Pvirtual.java - TestH5Plist.java - TestH5A.java - TestH5Oparams.java - TestH5Obasic.java - TestH5Ocreate.java - TestH5Ocopy.java - TestH5PL.java - TestH5Z.java + TestH5 + TestH5Eparams + TestH5Eregister + TestH5Fparams + TestH5Fbasic + TestH5F + TestH5Fswmr + TestH5Gbasic + TestH5G + TestH5Sbasic + TestH5S + TestH5Tparams + TestH5Tbasic + TestH5T + TestH5Dparams + TestH5D + TestH5Dplist + TestH5Lparams + TestH5Lbasic + TestH5Lcreate + TestH5R + TestH5P + TestH5PData + TestH5Pfapl + TestH5Pvirtual + TestH5Plist + TestH5A + TestH5Oparams + TestH5Obasic + TestH5Ocreate + TestH5Ocopy + TestH5PL + TestH5Z ) -if (HDF5_ENABLE_DEBUG_APIS) +if (NOT HDF5_ENABLE_DEBUG_APIS) set (HDF5_JAVA_TEST_SOURCES ${HDF5_JAVA_TEST_SOURCES} - TestUnit.java - ) - - file (WRITE ${PROJECT_BINARY_DIR}/Manifest.txt - "Main-Class: test.TestUnit -" - ) -else () - set (HDF5_JAVA_TEST_SOURCES - ${HDF5_JAVA_TEST_SOURCES} - TestH5E.java - TestH5Edefault.java - TestH5Giterate.java - TestAll.java - ) - - file (WRITE ${PROJECT_BINARY_DIR}/Manifest.txt - "Main-Class: test.TestAll -" + TestH5E + TestH5Edefault + TestH5Giterate ) endif () set (CMAKE_JAVA_INCLUDE_PATH "${HDF5_JAVA_LIB_DIR}/junit.jar;${HDF5_JAVA_LIB_DIR}/hamcrest-core.jar;${HDF5_JAVA_JARS};${HDF5_JAVA_LOGGING_JAR};${HDF5_JAVA_LOGGING_SIMPLE_JAR}") -add_jar (${HDF5_JAVA_TEST_LIB_TARGET} MANIFEST ${PROJECT_BINARY_DIR}/Manifest.txt ${HDF5_JAVA_TEST_SOURCES}) +foreach (test_file ${HDF5_JAVA_TEST_SOURCES}) -get_target_property (${HDF5_JAVA_TEST_LIB_TARGET}_JAR_FILE ${HDF5_JAVA_TEST_LIB_TARGET} JAR_FILE) -#install_jar (${HDF5_JAVA_TEST_LIB_TARGET} ${HJAVA_INSTALL_DATA_DIR}/tests tests) -#get_target_property (${HDF5_JAVA_TEST_LIB_TARGET}_CLASSPATH ${HDF5_JAVA_TEST_LIB_TARGET} CLASSDIR) + file (WRITE ${PROJECT_BINARY_DIR}/${test_file}Manifest.txt + "Main-Class: test.${test_file} +" + ) -add_dependencies (${HDF5_JAVA_TEST_LIB_TARGET} ${HDF5_JAVA_HDF5_LIB_TARGET}) -set_target_properties (${HDF5_JAVA_TEST_LIB_TARGET} PROPERTIES FOLDER test/java) + add_jar (${HDF5_JAVA_TEST_LIB_TARGET}_${test_file} MANIFEST ${PROJECT_BINARY_DIR}/${test_file}Manifest.txt ${test_file}.java) -if (HDF5_ENABLE_DEBUG_APIS) - set (HDF_JAVA_TEST_FILES - JUnit-unit.txt - JUnit-interface.ert - ) - set (testfilter "OK (608 tests)") -else () - set (HDF_JAVA_TEST_FILES - JUnit-interface.txt - JUnit-interface.ert - ) - set (testfilter "OK (645 tests)") -endif () + get_target_property (${HDF5_JAVA_TEST_LIB_TARGET}_${test_file}_JAR_FILE ${HDF5_JAVA_TEST_LIB_TARGET}_${test_file} JAR_FILE) + #install_jar (${HDF5_JAVA_TEST_LIB_TARGET}_${test_file} ${HJAVA_INSTALL_DATA_DIR}/tests tests) + #get_target_property (${HDF5_JAVA_TEST_LIB_TARGET}_${test_file}_CLASSPATH ${HDF5_JAVA_TEST_LIB_TARGET}_${test_file} CLASSDIR) + + add_dependencies (${HDF5_JAVA_TEST_LIB_TARGET}_${test_file} ${HDF5_JAVA_HDF5_LIB_TARGET}) + set_target_properties (${HDF5_JAVA_TEST_LIB_TARGET}_${test_file} PROPERTIES FOLDER test/java) +endforeach () -foreach (h5_file ${HDF_JAVA_TEST_FILES}) - HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/${h5_file}" "${PROJECT_BINARY_DIR}/${h5_file}" "${HDF5_JAVA_TEST_LIB_TARGET}_files") +foreach (h5_file ${HDF5_JAVA_TEST_SOURCES}) + HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/testfiles/JUnit-${h5_file}.txt" "${PROJECT_BINARY_DIR}/JUnit-${h5_file}.txt" "${HDF5_JAVA_TEST_LIB_TARGET}_files") endforeach () HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterate.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files") +HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterateL1.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files") +HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterateL2.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files") +HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterateO1.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files") +HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterateO2.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files") + add_custom_target(${HDF5_JAVA_TEST_LIB_TARGET}_files ALL COMMENT "Copying files needed by ${HDF5_JAVA_TEST_LIB_TARGET} tests" DEPENDS ${${HDF5_JAVA_TEST_LIB_TARGET}_files_list}) if (WIN32) @@ -104,62 +87,44 @@ else () set (CMAKE_JAVA_INCLUDE_FLAG_SEP ":") endif () -set (CMAKE_JAVA_CLASSPATH ".") -foreach (CMAKE_INCLUDE_PATH ${CMAKE_JAVA_INCLUDE_PATH}) - set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${CMAKE_INCLUDE_PATH}") -endforeach () -set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${${HDF5_JAVA_TEST_LIB_TARGET}_JAR_FILE}") - - set (CMD_ARGS "-Dhdf.hdf5lib.H5.loadLibraryName=$<TARGET_PROPERTY:${HDF5_JAVA_JNI_LIB_TARGET},OUTPUT_NAME$<$<CONFIG:Debug>:_DEBUG>>;") -add_test ( - NAME JUnit-interface-clearall-objects - COMMAND ${CMAKE_COMMAND} - -E remove - JUnit-interface.out - JUnit-interface.out.err -) +set (CMD_ARGS "-Dhdf.hdf5lib.H5.loadLibraryName=$<TARGET_PROPERTY:${HDF5_JAVA_JNI_LIB_TARGET},OUTPUT_NAME$<$<CONFIG:Debug>:_DEBUG>>;") + +foreach (test_file ${HDF5_JAVA_TEST_SOURCES}) + + set (CMAKE_JAVA_CLASSPATH ".") + foreach (CMAKE_INCLUDE_PATH ${CMAKE_JAVA_INCLUDE_PATH}) + set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${CMAKE_INCLUDE_PATH}") + endforeach () + set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${${HDF5_JAVA_TEST_LIB_TARGET}_${test_file}_JAR_FILE}") -if (HDF5_ENABLE_DEBUG_APIS) add_test ( - NAME JUnit-interface - COMMAND "${CMAKE_COMMAND}" - -D "TEST_TESTER=${CMAKE_Java_RUNTIME};${CMAKE_Java_RUNTIME_FLAGS}" - -D "TEST_CLASSPATH:STRING=${CMAKE_JAVA_CLASSPATH}" - -D "TEST_ARGS:STRING=${CMD_ARGS}-ea;org.junit.runner.JUnitCore" - -D "TEST_PROGRAM=test.TestUnit" - -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_OUTPUT_DIRECTORY}" - -D "TEST_FOLDER=${HDF5_BINARY_DIR}/java/test" - -D "TEST_OUTPUT=JUnit-interface.out" -# -D "TEST_LOG_LEVEL=trace" - -D "TEST_EXPECT=0" - -D "SKIP_APPEND=1" - -D "TEST_MASK_ERROR=TRUE" - -D "TEST_FILTER:STRING=${testfilter}" - -D "TEST_REFERENCE=JUnit-unit.txt" - -P "${HDF_RESOURCES_DIR}/jrunTest.cmake" + NAME JUnit-${test_file}-clearall-objects + COMMAND ${CMAKE_COMMAND} + -E remove + JUnit-${test_file}.out + JUnit-${test_file}.out.err ) -else () add_test ( - NAME JUnit-interface + NAME JUnit-${test_file} COMMAND "${CMAKE_COMMAND}" -D "TEST_TESTER=${CMAKE_Java_RUNTIME};${CMAKE_Java_RUNTIME_FLAGS}" -D "TEST_CLASSPATH:STRING=${CMAKE_JAVA_CLASSPATH}" -D "TEST_ARGS:STRING=${CMD_ARGS}-ea;org.junit.runner.JUnitCore" - -D "TEST_PROGRAM=test.TestAll" + -D "TEST_PROGRAM=test.${test_file}" -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_OUTPUT_DIRECTORY}" -D "TEST_FOLDER=${HDF5_BINARY_DIR}/java/test" - -D "TEST_OUTPUT=JUnit-interface.out" + -D "TEST_OUTPUT=JUnit-${test_file}.out" # -D "TEST_LOG_LEVEL=trace" -D "TEST_EXPECT=0" -D "SKIP_APPEND=1" -D "TEST_MASK_ERROR=TRUE" - -D "TEST_FILTER:STRING=${testfilter}" - -D "TEST_REFERENCE=JUnit-interface.txt" +# -D "TEST_FILTER:STRING=${testfilter}" + -D "TEST_REFERENCE=JUnit-${test_file}.txt" -P "${HDF_RESOURCES_DIR}/jrunTest.cmake" ) -endif () -set_tests_properties (JUnit-interface PROPERTIES - ENVIRONMENT "HDF5_PLUGIN_PATH=${CMAKE_BINARY_DIR}/testdir2" - DEPENDS "JUnit-interface-clearall-objects" -) + set_tests_properties (JUnit-${test_file} PROPERTIES + ENVIRONMENT "HDF5_PLUGIN_PATH=${CMAKE_BINARY_DIR}/testdir2" + DEPENDS "JUnit-${test_file}-clearall-objects" + ) +endforeach () diff --git a/java/test/JUnit-interface.ert b/java/test/JUnit-interface.ert deleted file mode 100644 index 5771a4f..0000000 --- a/java/test/JUnit-interface.ert +++ /dev/null @@ -1,2 +0,0 @@ -[main] INFO hdf.hdf5lib.H5 - HDF5 library: hdf5_java -[main] INFO hdf.hdf5lib.H5 - successfully loaded from java.library.path diff --git a/java/test/JUnit-interface.txt b/java/test/JUnit-interface.txt deleted file mode 100644 index 4b35c0b..0000000 --- a/java/test/JUnit-interface.txt +++ /dev/null @@ -1,677 +0,0 @@ -JUnit version 4.11 -.testJ2C -.testIsSerializable -.testH5garbage_collect -.testH5error_off -.serializeToDisk -.testH5open -.testH5check_version -.testH5get_libversion -.testH5set_free_list_limits -.testH5EprintInt -.testH5Eget_msg -.testH5Eget_num -.testH5Eget_class_name -.testH5Eget_num_with_msg -.testH5Eclear2 -.testH5Eprint2 -.testH5Ecreate_msg_major -.testH5Ecreate_msg_minor -.testH5Ecreate_stack -.testH5Ecreate_msg_name_null -.testH5Eauto_is_v2 -.testH5EclearInt -.testH5Eregister_class_lib_name_null -.testH5Eregister_class_version_null -.testH5Eunregister_class_invalid_classid -.testH5Eregister_class -.testH5Eregister_class_cls_name_null -.testH5EprintInt -.testH5Eset_current_stack_invalid_stkid -.testH5Eset_current_stack -.testH5Eget_num -.testH5Eclear -.testH5Eprint -.testH5Epush_null_name -.testH5Eget_num_with_msg -.testH5Eclear2_with_msg -.testH5Epush_invalid_stkid -.testH5Eget_current_stack -.testH5Ecreate_stack -.testH5Eget_msg_invalid_msgid -.testH5Eauto_is_v2 -.testH5EclearInt -.testH5Eauto_is_v2_invalid_stkid -.testH5Eclose_msg_invalid_errid -.testH5Eclose_stack_invalid_stackid -.testH5Eget_class_name_invalid_classname -.testH5Eget_num_invalid_stkid -.testH5EprintInt_invalid_classid -.testH5Epop -.testH5Epop_invalid_stkid -.testH5Eget_current_stack_pop -.testH5Eget_class_name_invalid_classid -.testH5Ecreate_msg_invalid_errid -.testH5Eclear2_invalid_stkid -.testH5Eprint2_invalid_classid -.testH5Eget_msg_major -.testH5Eget_msg_minor -.testH5Epush -.testH5Ewalk -.testH5Epop -.testH5Fcreate_null -.testH5Fflush_local -.testH5Fget_info -.testH5Fmount_null -.testH5Fcreate -.testH5Fflush_global -.testH5Funmount_null -.testH5Fclose_negative -.testH5Fopen_null -.testH5Fis_hdf5_null -.testH5Fis_hdf5_text -.testH5Fget_mdc_size -.testH5Fget_mdc_hit_rate -.testH5Fis_hdf5 -.testH5Fget_freespace -.testH5Fclose -.testH5Fget_filesize -.testH5Fcreate_EXCL -.testH5Freopen_closed -.testH5Freset_mdc_hit_rate_stats -.testH5Fget_name -.testH5Fcreate -.testH5Fclear_elink_file_cache -.testH5Fclose_twice -.testH5Freopen -.testH5Fopen_read_only -.testH5Fget_access_plist -.testH5Fget_obj_ids -.testH5Fget_intent_rdwr -.testH5Fget_access_plist_closed -.testH5Fget_create_plist_closed -.testH5Fget_intent_rdonly -.testH5Fget_create_plist -.testH5Fget_obj_count -.testH5Fstart_swmr_write -.testH5Fswmr_read_attempts -.testH5Gget_info_by_name_not_exists -.testH5Gget_info_by_idx_not_exists -.testH5Gget_info_by_name -.testH5Gget_create_plist -.testH5Gopen -.testH5Gget_info_by_idx_null -.testH5Gopen_not_exists -.testH5Gclose -.testH5Gcreate_anon -.testH5Gcreate_null -.testH5Gget_info_by_idx_fileid -.testH5Gclose_invalid -.testH5Gflush_invalid -.testH5Gopen_invalid -.testH5Grefresh_invalid -.testH5Gget_info_invalid -.testH5Gcreate_invalid -.testH5Gcreate_exists -.testH5Gget_info_by_name_null -.testH5Gget_info_by_name_invalid -.testH5Gget_create_plist_invalid -.testH5Gcreate -.testH5Gget_info_by_name_fileid -.testH5Gget_info_by_idx_invalid -.testH5Gopen_null -.testH5Gget_info_by_idx -.testH5Gget_info -.testH5Gget_info_by_name -.testH5Gget_create_plist -.testH5Gopen -.testH5Gget_obj_info_all_gid2 -.testH5Gget_obj_info_all_byIndexType -.testH5Gget_obj_info_max_limit -.testH5Gget_obj_info_all -.testH5Gget_obj_info_max -.testH5Gget_obj_info_all_gid -.testH5Gget_info_by_idx -.testH5Gget_info -.testH5Gget_obj_info_all -.testH5Sclose_invalid -.testH5Screate_simple_max_default -.testH5Screate_simple_dims_null -.testH5Sdecode_null -.testH5Screate_simple_dims_exceed -.testH5Screate_simple_unlimted_1d -.testH5Screate_simple_dims_invalid -.testH5Screate_scalar -.testH5Screate_simple -.testH5Screate_simple_rank_invalid -.testH5Sget_simple_extent_type_invalid -.testH5Sencode_invalid -.testH5Screate_null -.testH5Screate_simple_extent -.testH5Screate_invalid -.testH5Screate_simple_unlimted -.testH5Sget_select_npoints -.testH5Sget_select_type -.testH5Sset_extent_simple -.testH5Sget_select_hyper -.testH5Sget_select_valid -.testH5Sget_select_elem_pointlist -.testH5Sset_extent_none -.testH5Sencode_decode_scalar_dataspace -.testH5Soffset_simple -.testH5Scopy -.testH5Sget_simple_extent_ndims -.testH5Sextent_equal -.testH5Sget_simple_extent_dims -.testH5Sget_simple_extent_type -.testH5Shyper_regular -.testH5Sget_select_bounds -.testH5Sget_select_elem_pointlist_invalid -.testH5Sget_simple_extent_npoints -.testH5Sextent_copy -.testH5Sencode_decode_null_dataspace -.testH5Sis_simple -.testH5Sget_simple_extent_dims_null -.testH5Sselect_none -.testH5Tget_member_type_invalid -.testH5Tenum_insert_null -.testH5Tget_offset_invalid -.testH5Tset_precision_invalid -.testH5Tget_inpad_invalid -.testH5Tenum_nameof_invalid -.testH5Tget_member_value_invalid -.testH5Tenum_nameof_value_null -.testH5Tcreate_invalid -.testH5Tget_strpad_invalid -.testH5Tenum_valueof_invalid -.testH5Tget_fields_null -.testH5Topen_null -.testH5Tpack_invalid -.testH5Tcommit_null -.testH5Tinsert_invalid -.testH5Tenum_valueof_null -.testH5Tset_norm_invalid -.testH5Tlock_invalid -.testH5Tarray_create_invalid -.testH5Tget_member_value_null -.testH5Tset_offset_invalid -.testH5Tget_fields_invalid -.testH5Tequal_invalid -.testH5Tget_ebias_long_invalid -.testH5Tget_cset_invalid -.testH5Tget_size_invalid -.testH5Tset_strpad_invalid -.testH5Tset_ebias_invalid -.testH5Tget_sign_invalid -.testH5Tget_member_index_invalid -.testH5Tget_precision_invalid -.testH5Tset_fields_invalid -.testH5Tcopy_invalid -.testH5Tget_pad_invalid -.testH5Tset_order_invalid -.testH5Tget_member_class_invalid -.testH5Tget_super_invalid -.testH5Tget_class_invalid -.testH5Topen_invalid -.testH5Tget_precision_long_invalid -.testH5Tget_ebias_invalid -.testH5Tget_native_type_invalid -.testH5Tget_fields_length_invalid -.testH5Tget_norm_invalid -.testH5Tenum_nameof_invalid_size -.testH5Tset_pad_invalid -.testH5Tget_pad_null -.testH5Tset_tag_null -.testH5Tget_order_invalid -.testH5Tcommit_invalid -.testH5Tget_array_ndims_invalid -.testH5Tset_tag_invalid -.testH5Tvlen_create_invalid -.testH5Tenum_create_invalid -.testH5Tinsert_null -.testH5Tset_inpad_invalid -.testH5Tenum_valueof_name_null -.testH5Tset_cset_invalid -.testH5Tclose_invalid -.testH5Tget_nmembers_invalid -.testH5Tarray_create_value_null -.testH5Tset_size_invalid -.testH5Tflush_invalid -.testH5Tenum_insert_invalid -.testH5Tget_array_dims_null -.testH5Tget_member_index_null -.testH5Trefresh_invalid -.testH5Tset_sign_invalid -.testH5Tenum_insert_name_null -.testH5Tequal_not -.testH5Tcopy -.testH5Tequal -.testH5Torder_size -.testH5Tconvert -.testH5Tvlen_create -.testH5Tenum_create_functions -.testH5Tenum_functions -.testH5Tget_class -.testH5Tget_array_ndims -.testH5Tequal_type_error -.testH5Tget_array_dims -.testH5Tset_size -.testH5Tis_variable_str -.testH5Tcompound_functions -.testH5Tget_size -.testH5Tarray_create -.testH5Topaque_functions -.testH5Dget_space_status_invalid -.testH5Dget_access_plist_invalid 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-.testH5Lcopy_dst_link_exists -.testH5Lget_value_by_idx_external_name -.testH5Ldelete_by_idx_not_exist_name -.testH5Lget_info_softlink -.testH5Lget_value_external -.testH5Lget_value_by_idx_not_exist_create -.testH5Lget_value_by_idx_not_exist_name -.testH5Ldelete_hard_link -.testH5Rgetregion_Nullreference -.testH5Rget_obj_type2_Invalidreftype -.testH5Rdereference -.testH5Rget_name -.testH5Rcreate_Invalidreftype -.testH5Rget_name_NULLreference -.testH5Rget_region -.testH5Rdereference_Nullreference -.testH5Rcreate_refobj -.testH5Rcreate_Invalidspace_id -.testH5Rdereference_Invalidreference -.testH5Rgetregion_Badreferencetype -.testH5Rcreate_regionrefobj -.testH5Rget_name_Invalidreftype -.testH5Rgetregion_Invalidreftype -.testH5Rget_obj_type2 -.testH5Rcreate_InvalidObjectName -.testH5Pset_nbit -.testH5Pset_shared_mesg_index_InvalidFlag -.testH5Pset_shared_mesg_phase_change -.testH5PH5Pset_shared_mesg_phase_change_HighMaxlistValue -.testH5P_layout -.testH5Pget_link_creation_order 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-.testH5Pset_local_heap_size_hint -.testH5Pget_est_link_info -.testH5Pset_efile_prefix_null -.testH5Pset_scaleoffset -.testH5Pset_create_intermediate_group_invalidobject -.testH5PH5Pset_shared_mesg_phase_change_HighMinbtreeValue -.testH5Pset_create_intermediate_group -.testH5P_alloc_time -.testH5Pset_elink_acc_flags -.testH5Pset_link_phase_change_Highmax_Compact -.testH5P_chunk -.testH5P_sizes -.testH5Pset_link_creation_order_invalidvalue -.testH5P_sym_k -.testH5PH5Pset_shared_mesg_phase_change_MinbtreeGreaterThanMaxlist -.testH5Pget_version_null -.testH5Pset_scaleoffset_Invalidscale_factor -.testH5Pget_elink_prefix_null -.testH5Pget_data_transform_IllegalSize -.testH5Pget_create_intermediate_group -.testH5Pset_shared_mesg_nindexes -.testH5Pset_attr_creation_order_trackedPLUSindexed -.testH5Pget_sym_k_null -.testH5Pset_nlinks -.testH5P_obj_track_times -.testH5Pset_efile_prefix -.testH5P_userblock -.testH5Pget_local_heap_size_hint -.testH5Pset_shared_mesg_index_Invalid_indexnum -.testH5Pset_data_transform_InvalidExpression1 -.testH5Pset_data_transform_InvalidExpression2 -.testH5Pget_attr_phase_change -.testH5Pget_data_transform -.testH5Pget_create_intermediate_group_notcreated -.testH5Pset_elink_prefix -.testH5Pget_attr_creation_order -.testH5Pset_attr_creation_order_invalidvalue -.testH5Pget_shared_mesg_phase_change -.testH5Pget_shared_mesg_index -.testH5Pset_link_phase_change -.testH5Pget_shared_mesg_nindexes -.testH5Pget_version -.testH5Pset_elink_acc_flags_InvalidFlag1 -.testH5Pset_elink_acc_flags_InvalidFlag2 -.testH5Pget_link_phase_change_EqualsSet -.testH5Pget_elink_acc_flags -.testH5Pget_data_transform_ExpressionNotSet -.testH5P_fill_value -.testH5Pget_sizes_null -.testH5Pset_data_transform -.testH5Pset_attr_creation_order_tracked -.testH5P_buffer -.testH5Pdata_transform -.testH5P_elink_fapl -.testH5P_fapl_direct -.testH5P_alignment -.testH5P_fapl_family -.testH5P_chunk_cache -.testH5P_meta_block_size -.testH5Fmdc_logging -.testH5Pget_elink_fapl -.testH5Pset_mdc_config -.testH5P_small_data_block_size -.testH5Pset_fapl_log -.testH5P_evict_on_close -.testH5Pset_libver_bounds -.testH5P_sieve_buf_size -.testH5P_elink_file_cache_size -.testH5P_cache -.testH5Pget_mdc_config -.testH5P_fapl_muti_defaults -.testH5Pget_libver_bounds -.testH5P_btree_ratios -.testH5P_fapl_muti_nulls -.testH5Pset_fapl_sec2 -.testH5Pmulti_transform -.testH5Pset_elink_fapl_NegativeID -.testH5Pset_fapl_stdio -.testH5P_edc_check -.testH5Pset_elink_fapl -.testH5P_hyper_vector_size -.testH5P_gc_references -.testH5P_family_offset -.testH5P_fapl_core -.testH5P_fapl_muti -.testH5P_fapl_split -.testH5Pset_fapl_windows -.testH5P_fclose_degree -.testH5Pget_source_datasetname -.testH5Pvirtual_storage -.testH5Pget_selection_source_dataset -.testH5Pget_virtual_prefix -.testH5Pget_source_filename -.testH5Pset_get_virtual_printf_gap -.testH5Pget_virtual_count -.testH5Pset_virtual_prefix -.testH5Pset_get_virtual_view -.testH5Pget_mapping_parameters -.testH5Pset_virtual_prefix_null -.testH5P_genprop_basic_class -.testH5P_genprop_class_iter -.testH5P_genprop_basic_class_prop -.testH5P_genprop_basic_list_prop -.testH5Acreate2_nullname -.testH5Acreate_by_name -.testH5Aget_name_by_idx -.testH5Aget_storage_size -.testH5Aiterate -.testH5Aopen_by_idx -.testH5Aopen_invalidname -.testH5Aopen -.testH5Aget_info_by_name -.testH5Aget_create_plist -.testH5Adelete_by_name -.testH5Aopen_by_name -.testH5Aget_info -.testH5Aget_name -.testH5Aexists -.testH5Aget_info_by_idx -.testH5Arename -.testH5Adelete_by_idx_name1 -.testH5Adelete_by_idx_name2 -.testH5Adelete_by_idx_order -.testH5Arename_by_name -.testH5Acreate2_invalidobject -.testH5Acreate2 -.testH5Aiterate_by_name -.testH5Adelete_by_idx_null -.testH5Adelete_by_idx_invalidobject -.testH5Awrite_readVL -.testH5Aget_info1 -.testH5Oget_comment_by_name_null -.testH5Ovisit_by_name_nullname -.testH5Oget_info_invalid -.testH5Ovisit_by_name_null -.testH5Oget_comment_invalid -.testH5Oset_comment_by_name_invalid -.testH5Oopen_null -.testH5Oclose_invalid -.testH5Oflush_invalid -.testH5Oget_comment_by_name_invalid -.testH5Orefresh_invalid -.testH5Ocopy_null_dest -.testH5Olink_invalid -.testH5Oget_info_by_idx_invalid -.testH5Oget_info_by_idx_null -.testH5Olink_null_dest -.testH5Oget_info_by_name_invalid -.testH5Oget_info_by_name_null -.testH5Ocopy_invalid -.testH5Oset_comment_by_name_null -.testH5Ocopy_null_current -.testH5Oset_comment_invalid -.testH5Oopen_invalid -.testH5Ovisit_null -.testH5Oexists_by_name -.testH5Oget_info_by_idx_n0 -.testH5Oget_info_by_idx_n3 -.testH5Oget_info_by_name_not_exist_name -.testH5Ovisit_by_name -.testH5Oget_info_by_idx_name_not_exist_name -.testH5Oget_info_datatype -.testH5Oget_info_by_idx_not_exist_name -.testH5Oopen_by_idx_n0 -.testH5Oopen_by_idx_n3 -.testH5Oopen_not_exists -.testH5Ovisit -.testH5Oget_info_by_idx_not_exist_create -.testH5Oget_info_by_name_hardlink -.testH5Oget_info_by_name_group -.testH5Oopen_by_addr -.testH5Oget_info_by_name_not_exists -.testH5Oget_info_by_name_dataset -.testH5Oget_info_group -.testH5Oget_info_by_name_datatype -.testH5Oget_info_hardlink -.testH5Oget_info_by_idx_name_not_exist_create -.testH5Oget_info_dataset -.testH5OcopyRefsDatasettosameFile -.testH5OcopyRefsDatasettodiffFile -.testH5OcopyRefsAttr -.testH5Oget_info_by_idx_n0_create -.testH5Oget_info_softlink_dangle -.testH5Oget_info_softlink -.testH5Oget_info_externallink -.testH5Ocopy -.testH5Olink -.testH5Ocomment_by_name -.testH5Oget_info_by_idx_n1_create -.testH5Ocomment -.testH5Oinc_dec_count -.testH5Ocomment_by_name_clear -.testH5Ovisit_create -.testH5Ocopy_dst_link_exists -.testH5Ocomment_clear -.testH5Ocopy_cur_not_exists -.TestH5PLplugins -.TestH5PLpaths -.testH5Zfilter_avail -.testH5Zunregister_predefined -.testH5Zget_filter_info - -Time: XXXX - -OK (611 tests) - diff --git a/java/test/Makefile.am b/java/test/Makefile.am index f9db7ed..6635ef7 100644 --- a/java/test/Makefile.am +++ b/java/test/Makefile.am @@ -28,11 +28,14 @@ classes: pkgpath = test hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar +CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/junit.jar:$(top_srcdir)/java/lib/hamcrest-core.jar:$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.25.jar:$$CLASSPATH + jarfile = jar$(PACKAGE_TARNAME)test.jar -CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/junit.jar:$(top_srcdir)/java/lib/hamcrest-core.jar:$(top_srcdir)/java/lib/slf4j-api-1.7.5.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.5.jar:$$CLASSPATH AM_JAVACFLAGS = $(H5_JAVACFLAGS) -deprecation +TESTPACKAGE = + noinst_JAVA = \ TestH5.java \ TestH5Eparams.java \ @@ -67,7 +70,9 @@ noinst_JAVA = \ TestH5Ocopy.java \ TestH5PL.java \ TestH5Z.java \ - TestUnit.java + TestH5E.java \ + TestH5Edefault.java \ + TestH5Giterate.java $(jarfile): classnoinst.stamp classes $(JAR) cvf $@ -C $(JAVAROOT)/ $(pkgpath) @@ -81,17 +86,6 @@ TEST_SCRIPT = $(check_SCRIPTS) CLEANFILES = classnoinst.stamp $(jarfile) $(JAVAROOT)/$(pkgpath)/*.class junit.sh -#JAVA_JUNIT = $(JAVA_SRCS) -#noinst_JAVA = @JAVA_JUNIT@ -#EXTRA_JAVA = $(JAVA_JUNIT) -TESTS_JUNIT = AllJunitTests -#EXTRA_TEST = $(TESTS_JUNIT) - -AllJunitTests : - echo "#! /bin/sh" > $@ - echo "exec @JUNIT@ test.TestUnit" >> $@ - chmod +x $@ - clean: rm -rf $(JAVAROOT)/* rm -f $(jarfile) diff --git a/java/test/TestH5A.java b/java/test/TestH5A.java index 5e1e3f6..536364c 100644 --- a/java/test/TestH5A.java +++ b/java/test/TestH5A.java @@ -40,7 +40,7 @@ import org.junit.rules.TestName; public class TestH5A { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; + private static final String H5_FILE = "testA.h5"; private static final int DIM_X = 4; private static final int DIM_Y = 6; long H5fid = -1; diff --git a/java/test/TestH5D.java b/java/test/TestH5D.java index 372fdba..5d0e405 100644 --- a/java/test/TestH5D.java +++ b/java/test/TestH5D.java @@ -35,7 +35,7 @@ import org.junit.rules.TestName; public class TestH5D { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; + private static final String H5_FILE = "testD.h5"; private static final int DIM_X = 4; private static final int DIM_Y = 6; private static final int RANK = 2; diff --git a/java/test/TestH5Dplist.java b/java/test/TestH5Dplist.java index 6feaa23..406a1d3 100644 --- a/java/test/TestH5Dplist.java +++ b/java/test/TestH5Dplist.java @@ -31,7 +31,7 @@ import org.junit.rules.TestName; public class TestH5Dplist { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; + private static final String H5_FILE = "testDp.h5"; private static final int DIM_X = 4; private static final int DIM_Y = 7; private static final int EDIM_X = 6; diff --git a/java/test/TestH5E.java b/java/test/TestH5E.java index d1f50cc..656069a 100644 --- a/java/test/TestH5E.java +++ b/java/test/TestH5E.java @@ -78,14 +78,15 @@ public class TestH5E { H5.H5Fopen("test", 0, 1); } catch (HDF5LibraryException hdferr) { + long errnum = hdferr.getMajorErrorNumber(); int[] error_msg_type = { HDF5Constants.H5E_MAJOR }; String msg = null; try { - msg = H5.H5Eget_msg(hdferr.getMajorErrorNumber(), error_msg_type); + msg = H5.H5Eget_msg(errnum, error_msg_type); } catch (Throwable err) { err.printStackTrace(); - fail("H5.H5Eget_msg: " + err); + fail("H5.H5Eget_msg(Throwable): " + err); } assertNotNull("H5.H5Eget_msg: " + msg, msg); assertEquals("H5.H5Eget_msg: ", "Object atom", msg); @@ -93,7 +94,7 @@ public class TestH5E { } catch (Throwable err) { err.printStackTrace(); - fail("H5.H5Eget_msg: " + err); + fail("H5.H5Eget_msg(Other): " + err); } } @@ -103,10 +104,11 @@ public class TestH5E { H5.H5Fopen("test", 0, 1); } catch (HDF5LibraryException hdferr) { + long errnum = hdferr.getMinorErrorNumber(); int[] error_msg_type = { HDF5Constants.H5E_MINOR }; String msg = null; try { - msg = H5.H5Eget_msg(hdferr.getMinorErrorNumber(), error_msg_type); + msg = H5.H5Eget_msg(errnum, error_msg_type); } catch (Throwable err) { err.printStackTrace(); diff --git a/java/test/TestH5F.java b/java/test/TestH5F.java index ac2f70d..e4f9a30 100644 --- a/java/test/TestH5F.java +++ b/java/test/TestH5F.java @@ -31,7 +31,7 @@ import org.junit.rules.TestName; public class TestH5F { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; + private static final String H5_FILE = "testF.h5"; private static final int COUNT_OBJ_FILE = 1; private static final int COUNT_OBJ_DATASET = 0; diff --git a/java/test/TestH5Fbasic.java b/java/test/TestH5Fbasic.java index faf0bf7..11d6644 100644 --- a/java/test/TestH5Fbasic.java +++ b/java/test/TestH5Fbasic.java @@ -32,8 +32,8 @@ import org.junit.rules.TestName; public class TestH5Fbasic { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; - private static final String TXT_FILE = "test.txt"; + private static final String H5_FILE = "testFb.h5"; + private static final String TXT_FILE = "testFb.txt"; long H5fid = -1; private final void _deleteFile(String filename) { diff --git a/java/test/TestH5G.java b/java/test/TestH5G.java index 1a67990..6c30187 100644 --- a/java/test/TestH5G.java +++ b/java/test/TestH5G.java @@ -33,8 +33,8 @@ import org.junit.rules.TestName; public class TestH5G { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; - private static final String H5_FILE2 = "test2.h5"; + private static final String H5_FILE = "testG.h5"; + private static final String H5_FILE2 = "testG2.h5"; private static final String[] GROUPS = { "/G1", "/G1/G11", "/G1/G12", "/G1/G11/G111", "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114" }; private static final String[] GROUPS2 = { "/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"}; diff --git a/java/test/TestH5Gbasic.java b/java/test/TestH5Gbasic.java index 6ff7d03..202f6ff 100644 --- a/java/test/TestH5Gbasic.java +++ b/java/test/TestH5Gbasic.java @@ -32,7 +32,7 @@ import org.junit.rules.TestName; public class TestH5Gbasic { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; + private static final String H5_FILE = "testGb.h5"; long H5fid = -1; private final long _createGroup(long fid, String name) { diff --git a/java/test/TestH5Lbasic.java b/java/test/TestH5Lbasic.java index 9e832f3..0a836c1 100644 --- a/java/test/TestH5Lbasic.java +++ b/java/test/TestH5Lbasic.java @@ -34,7 +34,7 @@ import org.junit.rules.TestName; public class TestH5Lbasic { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "h5ex_g_iterate.hdf"; + private static final String H5_FILE = "h5ex_g_iterateL1.hdf"; long H5fid = -1; @Before diff --git a/java/test/TestH5Lcreate.java b/java/test/TestH5Lcreate.java index dcb076d..646babc 100644 --- a/java/test/TestH5Lcreate.java +++ b/java/test/TestH5Lcreate.java @@ -37,8 +37,8 @@ import org.junit.rules.TestName; public class TestH5Lcreate { @Rule public TestName testname = new TestName(); - private static final String H5_EXTFILE = "h5ex_g_iterate.hdf"; - private static final String H5_FILE = "test.h5"; + private static final String H5_EXTFILE = "h5ex_g_iterateL2.hdf"; + private static final String H5_FILE = "testL.h5"; private static final int DIM_X = 4; private static final int DIM_Y = 6; long H5fcpl = -1; diff --git a/java/test/TestH5Obasic.java b/java/test/TestH5Obasic.java index 923d2b1..8c6689f 100644 --- a/java/test/TestH5Obasic.java +++ b/java/test/TestH5Obasic.java @@ -34,7 +34,7 @@ import org.junit.rules.TestName; public class TestH5Obasic { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "h5ex_g_iterate.hdf"; + private static final String H5_FILE = "h5ex_g_iterateO1.hdf"; private static long H5la_ds1 = -1; private static long H5la_l1 = -1; private static long H5la_dt1 = -1; diff --git a/java/test/TestH5Ocreate.java b/java/test/TestH5Ocreate.java index 559e12b..c3e36b4 100644 --- a/java/test/TestH5Ocreate.java +++ b/java/test/TestH5Ocreate.java @@ -37,8 +37,8 @@ import org.junit.rules.TestName; public class TestH5Ocreate { @Rule public TestName testname = new TestName(); - private static final String H5_EXTFILE = "h5ex_g_iterate.hdf"; - private static final String H5_FILE = "test.h5"; + private static final String H5_EXTFILE = "h5ex_g_iterateO2.hdf"; + private static final String H5_FILE = "testO.h5"; private static final int DIM_X = 4; private static final int DIM_Y = 6; long H5fcpl = -1; diff --git a/java/test/TestH5Oparams.java b/java/test/TestH5Oparams.java index 2af190f..8b3c673 100644 --- a/java/test/TestH5Oparams.java +++ b/java/test/TestH5Oparams.java @@ -71,27 +71,27 @@ public class TestH5Oparams { @Test(expected = HDF5LibraryException.class) public void testH5Oget_info_invalid() throws Throwable { - H5.H5Oget_info(-1); + H5.H5Oget_info(-1, 0); } @Test(expected = NullPointerException.class) public void testH5Oget_info_by_name_null() throws Throwable { - H5.H5Oget_info_by_name(-1, null, HDF5Constants.H5P_DEFAULT); + H5.H5Oget_info_by_name(-1, null, 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) public void testH5Oget_info_by_name_invalid() throws Throwable { - H5.H5Oget_info_by_name(-1, "/testH5Gcreate", HDF5Constants.H5P_DEFAULT); + H5.H5Oget_info_by_name(-1, "/testH5Gcreate", 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) public void testH5Oget_info_by_idx_invalid() throws Throwable { - H5.H5Oget_info_by_idx(-1, "Bogus", -1, -1, -1L, -1); + H5.H5Oget_info_by_idx(-1, "Bogus", -1, -1, -1L, 0, -1); } @Test(expected = NullPointerException.class) public void testH5Oget_info_by_idx_null() throws Throwable { - H5.H5Oget_info_by_idx(-1, null, 0, 0, 0L, 0); + H5.H5Oget_info_by_idx(-1, null, 0, 0, 0L, 0, 0); } @Test(expected = HDF5LibraryException.class) @@ -106,17 +106,17 @@ public class TestH5Oparams { @Test(expected = NullPointerException.class) public void testH5Ovisit_null() throws Throwable { - H5.H5Ovisit(-1, -1, -1, null, null); + H5.H5Ovisit(-1, -1, -1, null, null, 0); } @Test(expected = NullPointerException.class) public void testH5Ovisit_by_name_nullname() throws Throwable { - H5.H5Ovisit_by_name(-1, null, -1, -1, null, null, -1); + H5.H5Ovisit_by_name(-1, null, -1, -1, null, null, 0, -1); } @Test(expected = NullPointerException.class) public void testH5Ovisit_by_name_null() throws Throwable { - H5.H5Ovisit_by_name(-1, "Bogus", -1, -1, null, null, -1); + H5.H5Ovisit_by_name(-1, "Bogus", -1, -1, null, null, 0, -1); } @Test(expected = HDF5LibraryException.class) diff --git a/java/test/TestH5P.java b/java/test/TestH5P.java index 521a53c..e6105d9 100644 --- a/java/test/TestH5P.java +++ b/java/test/TestH5P.java @@ -36,7 +36,7 @@ import org.junit.rules.TestName; public class TestH5P { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; + private static final String H5_FILE = "testP.h5"; private static final int DIM_X = 4; private static final int DIM_Y = 6; long[] H5dims = { DIM_X, DIM_Y }; diff --git a/java/test/TestH5PData.java b/java/test/TestH5PData.java index c414d67..dfd8e87 100644 --- a/java/test/TestH5PData.java +++ b/java/test/TestH5PData.java @@ -34,7 +34,7 @@ import org.junit.rules.TestName; public class TestH5PData { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; + private static final String H5_FILE = "testPD.h5"; private static final int DIM_X = 12; private static final int DIM_Y = 18; long H5fid = -1; diff --git a/java/test/TestH5Pfapl.java b/java/test/TestH5Pfapl.java index 0651502..10a79dd 100644 --- a/java/test/TestH5Pfapl.java +++ b/java/test/TestH5Pfapl.java @@ -38,10 +38,10 @@ import org.junit.rules.TestName; public class TestH5Pfapl { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; - private static final String H5_LOG_FILE = "test.log"; - private static final String H5_FAMILY_FILE = "test%05d"; - private static final String H5_MULTI_FILE = "testmulti"; + private static final String H5_FILE = "testPf.h5"; + private static final String H5_LOG_FILE = "testPf.log"; + private static final String H5_FAMILY_FILE = "testPf%05d"; + private static final String H5_MULTI_FILE = "testPfmulti"; private static char MULTI_LETTERS[] = {'X','s','b','r','g','l','o'}; private static final int DIM_X = 4; private static final int DIM_Y = 6; diff --git a/java/test/TestH5T.java b/java/test/TestH5T.java index 0c68d2e..1a7e58b 100644 --- a/java/test/TestH5T.java +++ b/java/test/TestH5T.java @@ -32,7 +32,7 @@ import org.junit.rules.TestName; public class TestH5T { @Rule public TestName testname = new TestName(); - private static final String H5_FILE = "test.h5"; + private static final String H5_FILE = "testT.h5"; long H5fid = -1; long H5strdid = -1; diff --git a/java/test/TestUnit.java b/java/test/TestUnit.java deleted file mode 100644 index e98fd4f..0000000 --- a/java/test/TestUnit.java +++ /dev/null @@ -1,36 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -package test; - -import org.junit.runner.RunWith; -import org.junit.runners.Suite; - -@RunWith(Suite.class) -@Suite.SuiteClasses( { TestH5.class, - TestH5Eparams.class, TestH5Eregister.class, - TestH5Fparams.class, TestH5Fbasic.class, TestH5F.class, TestH5Fswmr.class, - TestH5Gbasic.class, TestH5G.class, - TestH5Sbasic.class, TestH5S.class, - TestH5Tparams.class, TestH5Tbasic.class, TestH5T.class, - TestH5Dparams.class, TestH5D.class, TestH5Dplist.class, - TestH5Lparams.class, TestH5Lbasic.class, TestH5Lcreate.class, - TestH5R.class, - TestH5P.class, TestH5PData.class, TestH5Pfapl.class, TestH5Pvirtual.class, TestH5Plist.class, - TestH5A.class, - TestH5Oparams.class, TestH5Obasic.class, TestH5Ocopy.class, TestH5Ocreate.class, - TestH5PL.class, TestH5Z.class -}) - -public class TestUnit { -} diff --git a/java/test/junit.sh.in b/java/test/junit.sh.in index ca3790d..3bb0e85 100644 --- a/java/test/junit.sh.in +++ b/java/test/junit.sh.in @@ -16,6 +16,9 @@ top_builddir=@top_builddir@ top_srcdir=@top_srcdir@ srcdir=@srcdir@ +USE_FILTER_SZIP="@USE_FILTER_SZIP@" +USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" + TESTNAME=JUnitInterface EXIT_SUCCESS=0 EXIT_FAILURE=1 @@ -59,20 +62,49 @@ $top_builddir/java/src/jni/.libs/libhdf5_java.* LIST_JAR_FILES=" $HDFLIB_HOME/hamcrest-core.jar $HDFLIB_HOME/junit.jar -$HDFLIB_HOME/slf4j-api-1.7.5.jar -$HDFLIB_HOME/ext/slf4j-simple-1.7.5.jar +$HDFLIB_HOME/slf4j-api-1.7.25.jar +$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar $top_builddir/java/src/$JARFILE " LIST_DATA_FILES=" -$HDFTEST_HOME/JUnit-unit.txt -$HDFTEST_HOME/JUnit-interface.ert +$HDFTEST_HOME/testfiles/JUnit-TestH5.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Eparams.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Eregister.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Fparams.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Fbasic.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5F.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Fswmr.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Gbasic.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5G.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Sbasic.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5S.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Tparams.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Tbasic.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5T.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Dparams.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5D.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Dplist.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Lparams.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Lbasic.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Lcreate.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5R.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5P.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5PData.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Pfapl.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Pvirtual.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Plist.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5A.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Oparams.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Obasic.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Ocreate.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Ocopy.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5PL.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Z.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5E.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Edefault.txt +$HDFTEST_HOME/testfiles/JUnit-TestH5Giterate.txt " -expect="JUnit-unit.txt" -actual="JUnit-interface.out" -actual_err="JUnit-interface.err" -actual_ext="JUnit-interface.ext" - # # copy files from source dirs to test dir # @@ -173,14 +205,18 @@ COPY_DATAFILES_TO_BLDDIR() fi done $CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterate.hdf + $CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterateL1.hdf + $CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterateL2.hdf + $CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterateO1.hdf + $CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterateO2.hdf } CLEAN_DATAFILES_AND_BLDDIR() { - $RM $BLDDIR/h5ex_g_iterate.hdf - $RM $BLDDIR/JUnit-interface.out - $RM $BLDDIR/JUnit-interface.err - $RM $BLDDIR/JUnit-interface.ext + $RM $BLDDIR/h5ex_g_iterate*.hdf + $RM $BLDDIR/JUnit-*.out + $RM $BLDDIR/JUnit-*.ext + $RM $BLDDIR/JUnit-*.err # skip rm if srcdir is same as destdir # this occurs when build/test performed in source dir and # make cp fail @@ -188,8 +224,8 @@ CLEAN_DATAFILES_AND_BLDDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $RM $BLDDIR/JUnit-interface.ert - $RM $BLDDIR/JUnit-interface.txt + $RM $BLDDIR/JUnit-*.ert + $RM $BLDDIR/JUnit-*.txt fi } @@ -213,7 +249,7 @@ JAVAEXEFLAGS=@H5_JAVAFLAGS@ COPY_LIBFILES_TO_BLDLIBDIR COPY_DATAFILES_TO_BLDDIR -CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/junit.jar:"$BLDLIBDIR"/hamcrest-core.jar:"$BLDLIBDIR"/slf4j-api-1.7.5.jar:"$BLDLIBDIR"/slf4j-simple-1.7.5.jar:"$TESTJARFILE"" +CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/junit.jar:"$BLDLIBDIR"/hamcrest-core.jar:"$BLDLIBDIR"/slf4j-api-1.7.25.jar:"$BLDLIBDIR"/slf4j-simple-1.7.25.jar:"$TESTJARFILE"" TEST=/usr/bin/test if [ ! -x /usr/bin/test ] @@ -257,12 +293,372 @@ esac export LD_LIBRARY_PATH -echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestUnit" - # Run test. - TESTING JUnit - ( - $RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestUnit - ) >$actual_ext 2>$actual_err +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5" +TESTING JUnit-TestH5 +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5 > JUnit-TestH5.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5.ext > JUnit-TestH5.out + +if diff JUnit-TestH5.out JUnit-TestH5.txt > /dev/null; then + echo " PASSED JUnit-TestH5" +else + echo "**FAILED** JUnit-TestH5" + echo " Expected result differs from actual result" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /' +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eparams" +TESTING JUnit-TestH5Eparams +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eparams > JUnit-TestH5Eparams.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Eparams.ext > JUnit-TestH5Eparams.out + +if diff JUnit-TestH5Eparams.out JUnit-TestH5Eparams.txt > /dev/null; then + echo " PASSED JUnit-TestH5Eparams" +else + echo "**FAILED** JUnit-TestH5Eparams" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eregister" +TESTING JUnit-TestH5Eregister +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eregister > JUnit-TestH5Eregister.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Eregister.ext > JUnit-TestH5Eregister.out + +if diff JUnit-TestH5Eregister.out JUnit-TestH5Eregister.txt > /dev/null; then + echo " PASSED JUnit-TestH5Eregister" +else + echo "**FAILED** JUnit-TestH5Eregister" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fparams" +TESTING JUnit-TestH5Fparams +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fparams > JUnit-TestH5Fparams.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Fparams.ext > JUnit-TestH5Fparams.out + +if diff JUnit-TestH5Fparams.out JUnit-TestH5Fparams.txt > /dev/null; then + echo " PASSED JUnit-TestH5Fparams" +else + echo "**FAILED** JUnit-TestH5Fparams" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fbasic" +TESTING JUnit-TestH5Fbasic +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fbasic > JUnit-TestH5Fbasic.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Fbasic.ext > JUnit-TestH5Fbasic.out + +if diff JUnit-TestH5Fbasic.out JUnit-TestH5Fbasic.txt > /dev/null; then + echo " PASSED JUnit-TestH5Fbasic" +else + echo "**FAILED** JUnit-TestH5Fbasic" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5F" +TESTING JUnit-TestH5F +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5F > JUnit-TestH5F.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5F.ext > JUnit-TestH5F.out + +if diff JUnit-TestH5F.out JUnit-TestH5F.txt > /dev/null; then + echo " PASSED JUnit-TestH5F" +else + echo "**FAILED** JUnit-TestH5F" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fswmr" +TESTING JUnit-TestH5Fswmr +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fswmr > JUnit-TestH5Fswmr.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Fswmr.ext > JUnit-TestH5Fswmr.out + +if diff JUnit-TestH5Fswmr.out JUnit-TestH5Fswmr.txt > /dev/null; then + echo " PASSED JUnit-TestH5Fswmr" +else + echo "**FAILED** JUnit-TestH5Fswmr" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Gbasic" +TESTING JUnit-TestH5Gbasic +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Gbasic > JUnit-TestH5Gbasic.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Gbasic.ext > JUnit-TestH5Gbasic.out + +if diff JUnit-TestH5Gbasic.out JUnit-TestH5Gbasic.txt > /dev/null; then + echo " PASSED JUnit-TestH5Gbasic" +else + echo "**FAILED** JUnit-TestH5Gbasic" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5G" +TESTING JUnit-TestH5G +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5G > JUnit-TestH5G.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5G.ext > JUnit-TestH5G.out + +if diff JUnit-TestH5G.out JUnit-TestH5G.txt > /dev/null; then + echo " PASSED JUnit-TestH5G" +else + echo "**FAILED** JUnit-TestH5G" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Sbasic" +TESTING JUnit-TestH5Sbasic +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Sbasic > JUnit-TestH5Sbasic.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Sbasic.ext > JUnit-TestH5Sbasic.out + +if diff JUnit-TestH5Sbasic.out JUnit-TestH5Sbasic.txt > /dev/null; then + echo " PASSED JUnit-TestH5Sbasic" +else + echo "**FAILED** JUnit-TestH5Sbasic" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5S" +TESTING JUnit-TestH5S +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5S > JUnit-TestH5S.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5S.ext > JUnit-TestH5S.out + +if diff JUnit-TestH5S.out JUnit-TestH5S.txt > /dev/null; then + echo " PASSED JUnit-TestH5S" +else + echo "**FAILED** JUnit-TestH5S" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tparams" +TESTING JUnit-TestH5Tparams +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tparams > JUnit-TestH5Tparams.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Tparams.ext > JUnit-TestH5Tparams.out + +if diff JUnit-TestH5Tparams.out JUnit-TestH5Tparams.txt > /dev/null; then + echo " PASSED JUnit-TestH5Tparams" +else + echo "**FAILED** JUnit-TestH5Tparams" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tbasic" +TESTING JUnit-TestH5Tbasic +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tbasic > JUnit-TestH5Tbasic.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Tbasic.ext > JUnit-TestH5Tbasic.out + +if diff JUnit-TestH5Tbasic.out JUnit-TestH5Tbasic.txt > /dev/null; then + echo " PASSED JUnit-TestH5Tbasic" +else + echo "**FAILED** JUnit-TestH5Tbasic" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5T" +TESTING JUnit-TestH5T +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5T > JUnit-TestH5T.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5T.ext > JUnit-TestH5T.out + +if diff JUnit-TestH5T.out JUnit-TestH5T.txt > /dev/null; then + echo " PASSED JUnit-TestH5T" +else + echo "**FAILED** JUnit-TestH5T" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dparams" +TESTING JUnit-TestH5Dparams +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dparams > JUnit-TestH5Dparams.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Dparams.ext > JUnit-TestH5Dparams.out + +if diff JUnit-TestH5Dparams.out JUnit-TestH5Dparams.txt > /dev/null; then + echo " PASSED JUnit-TestH5Dparams" +else + echo "**FAILED** JUnit-TestH5Dparams" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5D" +TESTING JUnit-TestH5D +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5D > JUnit-TestH5D.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5D.ext > JUnit-TestH5D.out + +if diff JUnit-TestH5D.out JUnit-TestH5D.txt > /dev/null; then + echo " PASSED JUnit-TestH5D" +else + echo "**FAILED** JUnit-TestH5D" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dplist" +TESTING JUnit-TestH5Dplist +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dplist > JUnit-TestH5Dplist.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Dplist.ext > JUnit-TestH5Dplist.out + +if diff JUnit-TestH5Dplist.out JUnit-TestH5Dplist.txt > /dev/null; then + echo " PASSED JUnit-TestH5Dplist" +else + echo "**FAILED** JUnit-TestH5Dplist" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lparams" +TESTING JUnit-TestH5Lparams +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lparams > JUnit-TestH5Lparams.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Lparams.ext > JUnit-TestH5Lparams.out + +if diff JUnit-TestH5Lparams.out JUnit-TestH5Lparams.txt > /dev/null; then + echo " PASSED JUnit-TestH5Lparams" +else + echo "**FAILED** JUnit-TestH5Lparams" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lbasic" +TESTING JUnit-TestH5Lbasic +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lbasic > JUnit-TestH5Lbasic.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Lbasic.ext > JUnit-TestH5Lbasic.out + +if diff JUnit-TestH5Lbasic.out JUnit-TestH5Lbasic.txt > /dev/null; then + echo " PASSED JUnit-TestH5Lbasic" +else + echo "**FAILED** JUnit-TestH5Lbasic" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lcreate" +TESTING JUnit-TestH5Lcreate +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lcreate > JUnit-TestH5Lcreate.ext) # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ @@ -270,19 +666,323 @@ sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ - $actual_ext > $actual + JUnit-TestH5Lcreate.ext > JUnit-TestH5Lcreate.out -# SunOS does not support this. Skip it. -if [ $myos = SunOS ]; then - echo " SKIPPED" +if diff JUnit-TestH5Lcreate.out JUnit-TestH5Lcreate.txt > /dev/null; then + echo " PASSED JUnit-TestH5Lcreate" else - if $CMP $expect $actual; then - echo " PASSED" + echo "**FAILED** JUnit-TestH5Lcreate" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5R" +TESTING JUnit-TestH5R +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5R > JUnit-TestH5R.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5R.ext > JUnit-TestH5R.out + +if diff JUnit-TestH5R.out JUnit-TestH5R.txt > /dev/null; then + echo " PASSED JUnit-TestH5R" +else + echo "**FAILED** JUnit-TestH5R" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5P" +TESTING JUnit-TestH5P +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5P > JUnit-TestH5P.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5P.ext > JUnit-TestH5P.out + +if diff JUnit-TestH5P.out JUnit-TestH5P.txt > /dev/null; then + echo " PASSED JUnit-TestH5P" +else + echo "**FAILED** JUnit-TestH5P" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PData" +TESTING JUnit-TestH5PData +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PData > JUnit-TestH5PData.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5PData.ext > JUnit-TestH5PData.out + +if diff JUnit-TestH5PData.out JUnit-TestH5PData.txt > /dev/null; then + echo " PASSED JUnit-TestH5PData" +else + echo "**FAILED** JUnit-TestH5PData" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pfapl" +TESTING JUnit-TestH5Pfapl +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pfapl > JUnit-TestH5Pfapl.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Pfapl.ext > JUnit-TestH5Pfapl.out + +if diff JUnit-TestH5Pfapl.out JUnit-TestH5Pfapl.txt > /dev/null; then + echo " PASSED JUnit-TestH5Pfapl" +else + echo "**FAILED** JUnit-TestH5Pfapl" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pvirtual" +TESTING JUnit-TestH5Pvirtual +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pvirtual > JUnit-TestH5Pvirtual.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Pvirtual.ext > JUnit-TestH5Pvirtual.out + +if diff JUnit-TestH5Pvirtual.out JUnit-TestH5Pvirtual.txt > /dev/null; then + echo " PASSED JUnit-TestH5Pvirtual" +else + echo "**FAILED** JUnit-TestH5Pvirtual" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Plist" +TESTING JUnit-TestH5Plist +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Plist > JUnit-TestH5Plist.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Plist.ext > JUnit-TestH5Plist.out + +if diff JUnit-TestH5Plist.out JUnit-TestH5Plist.txt > /dev/null; then + echo " PASSED JUnit-TestH5Plist" +else + echo "**FAILED** JUnit-TestH5Plist" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5A" +TESTING JUnit-TestH5A +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5A > JUnit-TestH5A.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5A.ext > JUnit-TestH5A.out + +if diff JUnit-TestH5A.out JUnit-TestH5A.txt > /dev/null; then + echo " PASSED JUnit-TestH5A" +else + echo "**FAILED** JUnit-TestH5A" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Oparams" +TESTING JUnit-TestH5Oparams +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Oparams > JUnit-TestH5Oparams.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Oparams.ext > JUnit-TestH5Oparams.out + +if diff JUnit-TestH5Oparams.out JUnit-TestH5Oparams.txt > /dev/null; then + echo " PASSED JUnit-TestH5Oparams" +else + echo "**FAILED** JUnit-TestH5Oparams" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Obasic" +TESTING JUnit-TestH5Obasic +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Obasic > JUnit-TestH5Obasic.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Obasic.ext > JUnit-TestH5Obasic.out + +if diff JUnit-TestH5Obasic.out JUnit-TestH5Obasic.txt > /dev/null; then + echo " PASSED JUnit-TestH5Obasic" +else + echo "**FAILED** JUnit-TestH5Obasic" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocreate" +TESTING JUnit-TestH5Ocreate +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocreate > JUnit-TestH5Ocreate.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Ocreate.ext > JUnit-TestH5Ocreate.out + +if diff JUnit-TestH5Ocreate.out JUnit-TestH5Ocreate.txt > /dev/null; then + echo " PASSED JUnit-TestH5Ocreate" +else + echo "**FAILED** JUnit-TestH5Ocreate" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocopy" +TESTING JUnit-TestH5Ocopy +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocopy > JUnit-TestH5Ocopy.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Ocopy.ext > JUnit-TestH5Ocopy.out + +if diff JUnit-TestH5Ocopy.out JUnit-TestH5Ocopy.txt > /dev/null; then + echo " PASSED JUnit-TestH5Ocopy" +else + echo "**FAILED** JUnit-TestH5Ocopy" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PL" +TESTING JUnit-TestH5PL +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PL > JUnit-TestH5PL.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5PL.ext > JUnit-TestH5PL.out + +if diff JUnit-TestH5PL.out JUnit-TestH5PL.txt > /dev/null; then + echo " PASSED JUnit-TestH5PL" +else + echo "**FAILED** JUnit-TestH5PL" + nerrors="`expr $nerrors + 1`" +fi + +echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Z" +TESTING JUnit-TestH5Z +($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Z > JUnit-TestH5Z.ext) + +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Z.ext > JUnit-TestH5Z.out + +if diff JUnit-TestH5Z.out JUnit-TestH5Z.txt > /dev/null; then + echo " PASSED JUnit-TestH5Z" +else + echo "**FAILED** JUnit-TestH5Z" + nerrors="`expr $nerrors + 1`" +fi + +if test "X-$BUILD_MODE" = "X-production" ; then + if test $USE_FILTER_SZIP = "yes"; then + echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5E" + TESTING JUnit-TestH5E + ($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5E > JUnit-TestH5E.ext) + + # Extract file name, line number, version and thread IDs because they may be different + sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5E.ext > JUnit-TestH5E.out + + if diff JUnit-TestH5E.out JUnit-TestH5E.txt > /dev/null; then + echo " PASSED JUnit-TestH5E" + else + echo "**FAILED** JUnit-TestH5E" + nerrors="`expr $nerrors + 1`" + fi + fi + + if test $USE_FILTER_SZIP = "yes"; then + echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Edefault" + TESTING JUnit-TestH5Edefault + ($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Edefault > JUnit-TestH5Edefault.ext) + + # Extract file name, line number, version and thread IDs because they may be different + sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Edefault.ext > JUnit-TestH5Edefault.out + + if diff JUnit-TestH5Edefault.out JUnit-TestH5Edefault.txt > /dev/null; then + echo " PASSED JUnit-TestH5Edefault" + else + echo "**FAILED** JUnit-TestH5Edefault" + nerrors="`expr $nerrors + 1`" + fi + fi +fi +if test $USE_FILTER_SZIP = "yes"; then + echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Giterate" + TESTING JUnit-TestH5Giterate + ($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Giterate > JUnit-TestH5Giterate.ext) + + # Extract file name, line number, version and thread IDs because they may be different + sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5Giterate.ext > JUnit-TestH5Giterate.out + + if diff JUnit-TestH5Giterate.out JUnit-TestH5Giterate.txt > /dev/null; then + echo " PASSED JUnit-TestH5Giterate" else - echo "*FAILED*" - echo " Expected result differs from actual result" + echo "**FAILED** JUnit-TestH5Giterate" nerrors="`expr $nerrors + 1`" - test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /' fi fi diff --git a/java/test/testfiles/JUnit-TestH5.txt b/java/test/testfiles/JUnit-TestH5.txt new file mode 100644 index 0000000..37c5b65 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5.txt @@ -0,0 +1,15 @@ +JUnit version 4.11 +.testJ2C +.testIsSerializable +.testH5garbage_collect +.testH5error_off +.serializeToDisk +.testH5open +.testH5check_version +.testH5get_libversion +.testH5set_free_list_limits + +Time: XXXX + +OK (9 tests) + diff --git a/java/test/testfiles/JUnit-TestH5A.txt b/java/test/testfiles/JUnit-TestH5A.txt new file mode 100644 index 0000000..2026d21 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5A.txt @@ -0,0 +1,34 @@ +JUnit version 4.11 +.testH5Acreate2_nullname +.testH5Acreate_by_name +.testH5Aget_name_by_idx +.testH5Aget_storage_size +.testH5Aiterate +.testH5Aopen_by_idx +.testH5Aopen_invalidname +.testH5Aopen +.testH5Aget_info_by_name +.testH5Aget_create_plist +.testH5Adelete_by_name +.testH5Aopen_by_name +.testH5Aget_info +.testH5Aget_name +.testH5Aexists +.testH5Aget_info_by_idx +.testH5Arename +.testH5Adelete_by_idx_name1 +.testH5Adelete_by_idx_name2 +.testH5Adelete_by_idx_order +.testH5Arename_by_name +.testH5Acreate2_invalidobject +.testH5Acreate2 +.testH5Aiterate_by_name +.testH5Adelete_by_idx_null +.testH5Adelete_by_idx_invalidobject +.testH5Awrite_readVL +.testH5Aget_info1 + +Time: XXXX + +OK (28 tests) + diff --git a/java/test/testfiles/JUnit-TestH5D.txt b/java/test/testfiles/JUnit-TestH5D.txt new file mode 100644 index 0000000..987655b --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5D.txt @@ -0,0 +1,25 @@ +JUnit version 4.11 +.testH5Dget_storage_size +.testH5Diterate_write +.testH5Dcreate +.testH5Dget_offset +.testH5Dget_type +.testH5Dfill +.testH5Dopen +.testH5Dcreate_anon +.testH5Dfill_null +.testH5Dget_storage_size_empty +.testH5Diterate +.testH5Dget_access_plist +.testH5Dvlen_read_invalid_buffer +.testH5Dvlen_get_buf_size +.testH5Dget_space_closed +.testH5Dget_space_status +.testH5Dvlen_write_read +.testH5Dget_space +.testH5Dget_type_closed + +Time: XXXX + +OK (19 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Dparams.txt b/java/test/testfiles/JUnit-TestH5Dparams.txt new file mode 100644 index 0000000..9751be4 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Dparams.txt @@ -0,0 +1,26 @@ +JUnit version 4.11 +.testH5Dget_space_status_invalid +.testH5Dget_access_plist_invalid +.testH5Dget_type_invalid +.testH5Dget_create_plist_invalid +.testH5Dget_offset_invalid +.testH5Dvlen_get_buf_size_invalid +.testH5Dcreate_null +.testH5Dset_extent_status_null +.testH5Dvlen_reclaim_null +.testH5Dcreate_invalid +.testH5Dcreate_anon_invalid +.testH5Dset_extent_status_invalid +.testH5Dvlen_reclaim_invalid +.testH5Dopen_invalid +.testH5Dclose_invalid +.testH5Dflush_invalid +.testH5Drefresh_invalid +.testH5Dget_storage_size_invalid +.testH5Dget_space_invalid +.testH5Dopen_null + +Time: XXXX + +OK (20 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Dplist.txt b/java/test/testfiles/JUnit-TestH5Dplist.txt new file mode 100644 index 0000000..1dfbed1 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Dplist.txt @@ -0,0 +1,7 @@ +JUnit version 4.11 +.testH5Dset_extent + +Time: XXXX + +OK (1 test) + diff --git a/java/test/testfiles/JUnit-TestH5E.txt b/java/test/testfiles/JUnit-TestH5E.txt new file mode 100644 index 0000000..8c5e5e4 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5E.txt @@ -0,0 +1,11 @@ +JUnit version 4.11 +.testH5Eget_msg_major +.testH5Eget_msg_minor +.testH5Epush +.testH5Ewalk +.testH5Epop + +Time: XXXX + +OK (5 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Edefault.txt b/java/test/testfiles/JUnit-TestH5Edefault.txt new file mode 100644 index 0000000..62497f9 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Edefault.txt @@ -0,0 +1,60 @@ +JUnit version 4.11 +.testH5EprintInt +.testH5Eset_current_stack_invalid_stkid +.testH5Eset_current_stack +.testH5Eget_num +.testH5Eclear +.testH5Eprint +.testH5Epush_null_name +.testH5Eget_num_with_msg +.testH5Eclear2_with_msg +.testH5Epush_invalid_stkid +.testH5Eget_current_stack +.testH5Ecreate_stack +.testH5Eget_msg_invalid_msgid +.testH5Eauto_is_v2 +.testH5EclearInt +.testH5Eauto_is_v2_invalid_stkid +.testH5Eclose_msg_invalid_errid +.testH5Eclose_stack_invalid_stackid +.testH5Eget_class_name_invalid_classname +.testH5Eget_num_invalid_stkid +.testH5EprintInt_invalid_classid +.testH5Epop +.testH5Epop_invalid_stkid +.testH5Eget_current_stack_pop +.testH5Eget_class_name_invalid_classid +.testH5Ecreate_msg_invalid_errid +.testH5Eclear2_invalid_stkid +.testH5Eprint2_invalid_classid + +Time: XXXX + +OK (28 tests) + +HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): + #000: (file name) line (number) in H5Fopen(): unable to open file + major: File accessibilty + minor: Unable to open file + #001: (file name) line (number) in H5F__open(): unable to open file + major: File accessibilty + minor: Unable to open file + #002: (file name) line (number) in H5F_open(): unable to retrieve VFL class + major: File accessibilty + minor: Can't get value + #003: (file name) line (number) in H5FD_get_class(): can't find object for ID + major: Object atom + minor: Unable to find atom information (already closed?) +HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): + #000: (file name) line (number) in H5Fopen(): unable to open file + major: File accessibilty + minor: Unable to open file + #001: (file name) line (number) in H5F__open(): unable to open file + major: File accessibilty + minor: Unable to open file + #002: (file name) line (number) in H5F_open(): unable to retrieve VFL class + major: File accessibilty + minor: Can't get value + #003: (file name) line (number) in H5FD_get_class(): can't find object for ID + major: Object atom + minor: Unable to find atom information (already closed?) diff --git a/java/test/testfiles/JUnit-TestH5Eparams.txt b/java/test/testfiles/JUnit-TestH5Eparams.txt new file mode 100644 index 0000000..92f8068 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Eparams.txt @@ -0,0 +1,19 @@ +JUnit version 4.11 +.testH5EprintInt +.testH5Eget_msg +.testH5Eget_num +.testH5Eget_class_name +.testH5Eget_num_with_msg +.testH5Eclear2 +.testH5Eprint2 +.testH5Ecreate_msg_major +.testH5Ecreate_msg_minor +.testH5Ecreate_stack +.testH5Ecreate_msg_name_null +.testH5Eauto_is_v2 +.testH5EclearInt + +Time: XXXX + +OK (13 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Eregister.txt b/java/test/testfiles/JUnit-TestH5Eregister.txt new file mode 100644 index 0000000..132e123 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Eregister.txt @@ -0,0 +1,11 @@ +JUnit version 4.11 +.testH5Eregister_class_lib_name_null +.testH5Eregister_class_version_null +.testH5Eunregister_class_invalid_classid +.testH5Eregister_class +.testH5Eregister_class_cls_name_null + +Time: XXXX + +OK (5 tests) + diff --git a/java/test/testfiles/JUnit-TestH5F.txt b/java/test/testfiles/JUnit-TestH5F.txt new file mode 100644 index 0000000..16a423e --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5F.txt @@ -0,0 +1,14 @@ +JUnit version 4.11 +.testH5Fget_access_plist +.testH5Fget_obj_ids +.testH5Fget_intent_rdwr +.testH5Fget_access_plist_closed +.testH5Fget_create_plist_closed +.testH5Fget_intent_rdonly +.testH5Fget_create_plist +.testH5Fget_obj_count + +Time: XXXX + +OK (8 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Fbasic.txt b/java/test/testfiles/JUnit-TestH5Fbasic.txt new file mode 100644 index 0000000..467e2fb --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Fbasic.txt @@ -0,0 +1,21 @@ +JUnit version 4.11 +.testH5Fget_mdc_size +.testH5Fget_mdc_hit_rate +.testH5Fis_hdf5 +.testH5Fget_freespace +.testH5Fclose +.testH5Fget_filesize +.testH5Fcreate_EXCL +.testH5Freopen_closed +.testH5Freset_mdc_hit_rate_stats +.testH5Fget_name +.testH5Fcreate +.testH5Fclear_elink_file_cache +.testH5Fclose_twice +.testH5Freopen +.testH5Fopen_read_only + +Time: XXXX + +OK (15 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Fparams.txt b/java/test/testfiles/JUnit-TestH5Fparams.txt new file mode 100644 index 0000000..9d35220 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Fparams.txt @@ -0,0 +1,17 @@ +JUnit version 4.11 +.testH5Fcreate_null +.testH5Fflush_local +.testH5Fget_info +.testH5Fmount_null +.testH5Fcreate +.testH5Fflush_global +.testH5Funmount_null +.testH5Fclose_negative +.testH5Fopen_null +.testH5Fis_hdf5_null +.testH5Fis_hdf5_text + +Time: XXXX + +OK (11 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Fswmr.txt b/java/test/testfiles/JUnit-TestH5Fswmr.txt new file mode 100644 index 0000000..f943892 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Fswmr.txt @@ -0,0 +1,8 @@ +JUnit version 4.11 +.testH5Fstart_swmr_write +.testH5Fswmr_read_attempts + +Time: XXXX + +OK (2 tests) + diff --git a/java/test/testfiles/JUnit-TestH5G.txt b/java/test/testfiles/JUnit-TestH5G.txt new file mode 100644 index 0000000..cbcea1d --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5G.txt @@ -0,0 +1,17 @@ +JUnit version 4.11 +.testH5Gget_info_by_name +.testH5Gget_create_plist +.testH5Gopen +.testH5Gget_obj_info_all_gid2 +.testH5Gget_obj_info_all_byIndexType +.testH5Gget_obj_info_max_limit +.testH5Gget_obj_info_all +.testH5Gget_obj_info_max +.testH5Gget_obj_info_all_gid +.testH5Gget_info_by_idx +.testH5Gget_info + +Time: XXXX + +OK (11 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Gbasic.txt b/java/test/testfiles/JUnit-TestH5Gbasic.txt new file mode 100644 index 0000000..3521696 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Gbasic.txt @@ -0,0 +1,33 @@ +JUnit version 4.11 +.testH5Gget_info_by_name_not_exists +.testH5Gget_info_by_idx_not_exists +.testH5Gget_info_by_name +.testH5Gget_create_plist +.testH5Gopen +.testH5Gget_info_by_idx_null +.testH5Gopen_not_exists +.testH5Gclose +.testH5Gcreate_anon +.testH5Gcreate_null +.testH5Gget_info_by_idx_fileid +.testH5Gclose_invalid +.testH5Gflush_invalid +.testH5Gopen_invalid +.testH5Grefresh_invalid +.testH5Gget_info_invalid +.testH5Gcreate_invalid +.testH5Gcreate_exists +.testH5Gget_info_by_name_null +.testH5Gget_info_by_name_invalid +.testH5Gget_create_plist_invalid +.testH5Gcreate +.testH5Gget_info_by_name_fileid +.testH5Gget_info_by_idx_invalid +.testH5Gopen_null +.testH5Gget_info_by_idx +.testH5Gget_info + +Time: XXXX + +OK (27 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Giterate.txt b/java/test/testfiles/JUnit-TestH5Giterate.txt new file mode 100644 index 0000000..38402af --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Giterate.txt @@ -0,0 +1,7 @@ +JUnit version 4.11 +.testH5Gget_obj_info_all + +Time: XXXX + +OK (1 test) + diff --git a/java/test/testfiles/JUnit-TestH5Lbasic.txt b/java/test/testfiles/JUnit-TestH5Lbasic.txt new file mode 100644 index 0000000..b9b580c --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Lbasic.txt @@ -0,0 +1,23 @@ +JUnit version 4.11 +.testH5Lget_info_by_idx_not_exist_name +.testH5Lget_name_by_idx_not_exist +.testH5Lvisit +.testH5Lget_name_by_idx_n0 +.testH5Lget_name_by_idx_n3 +.testH5Lvisit_by_name +.testH5Literate_by_name +.testH5Lget_info_hardlink +.testH5Literate +.testH5Lget_info_by_idx_n0 +.testH5Lget_info_by_idx_n3 +.testH5Lget_info_by_idx_name_not_exist_create +.testH5Lexists +.testH5Lget_info_by_idx_name_not_exist_name +.testH5Lget_info_by_idx_not_exist_create +.testH5Lget_info_not_exist +.testH5Lget_info_dataset + +Time: XXXX + +OK (17 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Lcreate.txt b/java/test/testfiles/JUnit-TestH5Lcreate.txt new file mode 100644 index 0000000..cbd5d36 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Lcreate.txt @@ -0,0 +1,42 @@ +JUnit version 4.11 +.testH5Lget_info_by_idx_n0_create +.testH5Ldelete_soft_link_dangle +.testH5Lget_value_by_idx_external_create +.testH5Ldelete_by_idx_not_exist_create +.testH5Lvisit_create +.testH5Lmove_dst_link_exists +.testH5Lcreate_soft_dangle +.testH5Literate_create +.testH5Lcopy_cur_not_exists +.testH5Lcopy +.testH5Lmove +.testH5Lget_value_by_idx_n2_create +.testH5Lget_value_soft +.testH5Ldelete_by_idx_n2_name +.testH5Lget_info_by_idx_n1_create +.testH5Lcreate_external +.testH5Lget_value_dangle +.testH5Lcreate_hard_dst_link_exists +.testH5Lget_value_by_idx_n2_name +.testH5Lcreate_soft_dst_link_exists +.testH5Lcreate_hard +.testH5Lcreate_soft +.testH5Lmove_cur_not_exists +.testH5Lcreate_hard_cur_not_exists +.testH5Lget_info_softlink_dangle +.testH5Ldelete_by_idx_n2_create +.testH5Ldelete_soft_link +.testH5Lget_info_externallink +.testH5Lcopy_dst_link_exists +.testH5Lget_value_by_idx_external_name +.testH5Ldelete_by_idx_not_exist_name +.testH5Lget_info_softlink +.testH5Lget_value_external +.testH5Lget_value_by_idx_not_exist_create +.testH5Lget_value_by_idx_not_exist_name +.testH5Ldelete_hard_link + +Time: XXXX + +OK (36 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Lparams.txt b/java/test/testfiles/JUnit-TestH5Lparams.txt new file mode 100644 index 0000000..a22741c --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Lparams.txt @@ -0,0 +1,44 @@ +JUnit version 4.11 +.testH5Lcopy_invalid +.testH5Lget_value_by_idx_null +.testH5Lcreate_external_invalid +.testH5Lexists_null +.testH5Lget_info_invalid +.testH5Lget_name_by_idx_invalid +.testH5Lmove_null_current +.testH5Literate_by_name_nullname +.testH5Lvisit_by_name_nullname +.testH5Lvisit_null +.testH5Lget_name_by_idx_null +.testH5Lcreate_hard_null_dest +.testH5Lget_value_null +.testH5Lcreate_external_null_dest +.testH5Lcreate_external_null_file +.testH5Lcreate_external_null_current +.testH5Ldelete_null +.testH5Lexists_invalid +.testH5Lmove_invalid +.testH5Lcreate_hard_invalid +.testH5Lcopy_null_dest +.testH5Lcreate_soft_null_current +.testH5Lcopy_null_current +.testH5Lget_info_by_idx_null +.testH5Literate_null +.testH5Ldelete_invalid +.testH5Lvisit_by_name_null +.testH5Ldelete_by_idx_invalid +.testH5Lget_info_by_idx_invalid +.testH5Ldelete_by_idx_null +.testH5Lcreate_soft_invalid +.testH5Lcreate_hard_null_current +.testH5Lget_value_by_idx_invalid +.testH5Lmove_null_dest +.testH5Lget_info_null +.testH5Literate_by_name_null +.testH5Lcreate_soft_null_dest +.testH5Lget_value_invalid + +Time: XXXX + +OK (38 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Obasic.txt b/java/test/testfiles/JUnit-TestH5Obasic.txt new file mode 100644 index 0000000..d015bdd --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Obasic.txt @@ -0,0 +1,29 @@ +JUnit version 4.11 +.testH5Oexists_by_name +.testH5Oget_info_by_idx_n0 +.testH5Oget_info_by_idx_n3 +.testH5Oget_info_by_name_not_exist_name +.testH5Ovisit_by_name +.testH5Oget_info_by_idx_name_not_exist_name +.testH5Oget_info_datatype +.testH5Oget_info_by_idx_not_exist_name +.testH5Oopen_by_idx_n0 +.testH5Oopen_by_idx_n3 +.testH5Oopen_not_exists +.testH5Ovisit +.testH5Oget_info_by_idx_not_exist_create +.testH5Oget_info_by_name_hardlink +.testH5Oget_info_by_name_group +.testH5Oopen_by_addr +.testH5Oget_info_by_name_not_exists +.testH5Oget_info_by_name_dataset +.testH5Oget_info_group +.testH5Oget_info_by_name_datatype +.testH5Oget_info_hardlink +.testH5Oget_info_by_idx_name_not_exist_create +.testH5Oget_info_dataset + +Time: XXXX + +OK (23 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Ocopy.txt b/java/test/testfiles/JUnit-TestH5Ocopy.txt new file mode 100644 index 0000000..32dfde7 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Ocopy.txt @@ -0,0 +1,9 @@ +JUnit version 4.11 +.testH5OcopyRefsDatasettosameFile +.testH5OcopyRefsDatasettodiffFile +.testH5OcopyRefsAttr + +Time: XXXX + +OK (3 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Ocreate.txt b/java/test/testfiles/JUnit-TestH5Ocreate.txt new file mode 100644 index 0000000..c2365e5 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Ocreate.txt @@ -0,0 +1,21 @@ +JUnit version 4.11 +.testH5Oget_info_by_idx_n0_create +.testH5Oget_info_softlink_dangle +.testH5Oget_info_softlink +.testH5Oget_info_externallink +.testH5Ocopy +.testH5Olink +.testH5Ocomment_by_name +.testH5Oget_info_by_idx_n1_create +.testH5Ocomment +.testH5Oinc_dec_count +.testH5Ocomment_by_name_clear +.testH5Ovisit_create +.testH5Ocopy_dst_link_exists +.testH5Ocomment_clear +.testH5Ocopy_cur_not_exists + +Time: XXXX + +OK (15 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Oparams.txt b/java/test/testfiles/JUnit-TestH5Oparams.txt new file mode 100644 index 0000000..94220b9 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Oparams.txt @@ -0,0 +1,30 @@ +JUnit version 4.11 +.testH5Oget_comment_by_name_null +.testH5Ovisit_by_name_nullname +.testH5Oget_info_invalid +.testH5Ovisit_by_name_null +.testH5Oget_comment_invalid +.testH5Oset_comment_by_name_invalid +.testH5Oopen_null +.testH5Oclose_invalid +.testH5Oflush_invalid +.testH5Oget_comment_by_name_invalid +.testH5Orefresh_invalid +.testH5Ocopy_null_dest +.testH5Olink_invalid +.testH5Oget_info_by_idx_invalid +.testH5Oget_info_by_idx_null +.testH5Olink_null_dest +.testH5Oget_info_by_name_invalid +.testH5Oget_info_by_name_null +.testH5Ocopy_invalid +.testH5Oset_comment_by_name_null +.testH5Ocopy_null_current +.testH5Oset_comment_invalid +.testH5Oopen_invalid +.testH5Ovisit_null + +Time: XXXX + +OK (24 tests) + diff --git a/java/test/testfiles/JUnit-TestH5P.txt b/java/test/testfiles/JUnit-TestH5P.txt new file mode 100644 index 0000000..c937ae2 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5P.txt @@ -0,0 +1,91 @@ +JUnit version 4.11 +.testH5Pset_nbit +.testH5Pset_shared_mesg_index_InvalidFlag +.testH5Pset_shared_mesg_phase_change +.testH5PH5Pset_shared_mesg_phase_change_HighMaxlistValue +.testH5P_layout +.testH5Pget_link_creation_order +.testH5Pget_efile_prefix +.testH5Pset_shared_mesg_nindexes_InvalidHIGHnindexes +.testH5P_file_space_page_size +.testH5Pget_shared_mesg_index_Invalid_indexnum +.testH5Pset_data_transform_NullExpression +.testH5Pset_elink_prefix_null +.testH5Pget_elink_prefix +.testH5Pget_nlinks +.testH5Pset_libver_bounds_invalidhigh +.testH5Pget_char_encoding +.testH5P_istore_k +.testH5Pget_link_phase_change +.testH5Pset_link_phase_change_max_compactLESSTHANmin_dense +.testH5Pget_shared_mesg_phase_change_EqualsSET +.testH5Pset_scaleoffset_Invalidscale_type +.testH5Pget_istore_k_null +.testH5Pset_libver_bounds_invalidlow +.testH5Pset_est_link_info +.testH5Pget_link_phase_change_Null +.testH5P_fill_time +.testH5Pget_userblock_null +.testH5Pset_link_creation_order_tracked +.testH5Pset_shared_mesg_index +.testH5Pset_copy_object +.testH5Pset_link_creation_order_trackedPLUSindexed +.testH5P_file_space_strategy +.testH5Pset_copy_object_invalidobject +.testH5Pset_est_link_info_InvalidValues +.testH5Pset_local_heap_size_hint +.testH5Pget_est_link_info +.testH5Pset_efile_prefix_null +.testH5Pset_scaleoffset +.testH5Pset_create_intermediate_group_invalidobject +.testH5PH5Pset_shared_mesg_phase_change_HighMinbtreeValue +.testH5Pset_create_intermediate_group +.testH5P_alloc_time +.testH5Pset_elink_acc_flags +.testH5Pset_link_phase_change_Highmax_Compact +.testH5P_chunk +.testH5P_sizes +.testH5Pset_link_creation_order_invalidvalue +.testH5P_sym_k +.testH5PH5Pset_shared_mesg_phase_change_MinbtreeGreaterThanMaxlist +.testH5Pget_version_null +.testH5Pset_scaleoffset_Invalidscale_factor +.testH5Pget_elink_prefix_null +.testH5Pget_data_transform_IllegalSize +.testH5Pget_create_intermediate_group +.testH5Pset_shared_mesg_nindexes +.testH5Pset_attr_creation_order_trackedPLUSindexed +.testH5Pget_sym_k_null +.testH5Pset_nlinks +.testH5P_obj_track_times +.testH5Pset_efile_prefix +.testH5P_userblock +.testH5Pget_local_heap_size_hint +.testH5Pset_shared_mesg_index_Invalid_indexnum +.testH5Pset_data_transform_InvalidExpression1 +.testH5Pset_data_transform_InvalidExpression2 +.testH5Pget_attr_phase_change +.testH5Pget_data_transform +.testH5Pget_create_intermediate_group_notcreated +.testH5Pset_elink_prefix +.testH5Pget_attr_creation_order +.testH5Pset_attr_creation_order_invalidvalue +.testH5Pget_shared_mesg_phase_change +.testH5Pget_shared_mesg_index +.testH5Pset_link_phase_change +.testH5Pget_shared_mesg_nindexes +.testH5Pget_version +.testH5Pset_elink_acc_flags_InvalidFlag1 +.testH5Pset_elink_acc_flags_InvalidFlag2 +.testH5Pget_link_phase_change_EqualsSet +.testH5Pget_elink_acc_flags +.testH5Pget_data_transform_ExpressionNotSet +.testH5P_fill_value +.testH5Pget_sizes_null +.testH5Pset_data_transform +.testH5Pset_attr_creation_order_tracked + +Time: XXXX + +OK (85 tests) + diff --git a/java/test/testfiles/JUnit-TestH5PData.txt b/java/test/testfiles/JUnit-TestH5PData.txt new file mode 100644 index 0000000..6356d69 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5PData.txt @@ -0,0 +1,8 @@ +JUnit version 4.11 +.testH5P_buffer +.testH5Pdata_transform + +Time: XXXX + +OK (2 tests) + diff --git a/java/test/testfiles/JUnit-TestH5PL.txt b/java/test/testfiles/JUnit-TestH5PL.txt new file mode 100644 index 0000000..fb78bb5 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5PL.txt @@ -0,0 +1,8 @@ +JUnit version 4.11 +.TestH5PLplugins +.TestH5PLpaths + +Time: XXXX + +OK (2 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Pfapl.txt b/java/test/testfiles/JUnit-TestH5Pfapl.txt new file mode 100644 index 0000000..c4f37d0 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Pfapl.txt @@ -0,0 +1,41 @@ +JUnit version 4.11 +.testH5P_elink_fapl +.testH5P_fapl_direct +.testH5P_alignment +.testH5P_fapl_family +.testH5P_chunk_cache +.testH5P_meta_block_size +.testH5Fmdc_logging +.testH5Pget_elink_fapl +.testH5Pset_mdc_config +.testH5P_small_data_block_size +.testH5Pset_fapl_log +.testH5P_evict_on_close +.testH5Pset_libver_bounds +.testH5P_sieve_buf_size +.testH5P_elink_file_cache_size +.testH5P_cache +.testH5Pget_mdc_config +.testH5P_fapl_muti_defaults +.testH5Pget_libver_bounds +.testH5P_btree_ratios +.testH5P_fapl_muti_nulls +.testH5Pset_fapl_sec2 +.testH5Pmulti_transform +.testH5Pset_elink_fapl_NegativeID +.testH5Pset_fapl_stdio +.testH5P_edc_check +.testH5Pset_elink_fapl +.testH5P_hyper_vector_size +.testH5P_gc_references +.testH5P_family_offset +.testH5P_fapl_core +.testH5P_fapl_muti +.testH5P_fapl_split +.testH5Pset_fapl_windows +.testH5P_fclose_degree + +Time: XXXX + +OK (35 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Plist.txt b/java/test/testfiles/JUnit-TestH5Plist.txt new file mode 100644 index 0000000..ed9843a --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Plist.txt @@ -0,0 +1,10 @@ +JUnit version 4.11 +.testH5P_genprop_basic_class +.testH5P_genprop_class_iter +.testH5P_genprop_basic_class_prop +.testH5P_genprop_basic_list_prop + +Time: XXXX + +OK (4 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Pvirtual.txt b/java/test/testfiles/JUnit-TestH5Pvirtual.txt new file mode 100644 index 0000000..e57f683 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Pvirtual.txt @@ -0,0 +1,17 @@ +JUnit version 4.11 +.testH5Pget_source_datasetname +.testH5Pvirtual_storage +.testH5Pget_selection_source_dataset +.testH5Pget_virtual_prefix +.testH5Pget_source_filename +.testH5Pset_get_virtual_printf_gap +.testH5Pget_virtual_count +.testH5Pset_virtual_prefix +.testH5Pset_get_virtual_view +.testH5Pget_mapping_parameters +.testH5Pset_virtual_prefix_null + +Time: XXXX + +OK (11 tests) + diff --git a/java/test/testfiles/JUnit-TestH5R.txt b/java/test/testfiles/JUnit-TestH5R.txt new file mode 100644 index 0000000..150df54 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5R.txt @@ -0,0 +1,23 @@ +JUnit version 4.11 +.testH5Rgetregion_Nullreference +.testH5Rget_obj_type2_Invalidreftype +.testH5Rdereference +.testH5Rget_name +.testH5Rcreate_Invalidreftype +.testH5Rget_name_NULLreference +.testH5Rget_region +.testH5Rdereference_Nullreference +.testH5Rcreate_refobj +.testH5Rcreate_Invalidspace_id +.testH5Rdereference_Invalidreference +.testH5Rgetregion_Badreferencetype +.testH5Rcreate_regionrefobj +.testH5Rget_name_Invalidreftype +.testH5Rgetregion_Invalidreftype +.testH5Rget_obj_type2 +.testH5Rcreate_InvalidObjectName + +Time: XXXX + +OK (17 tests) + diff --git a/java/test/testfiles/JUnit-TestH5S.txt b/java/test/testfiles/JUnit-TestH5S.txt new file mode 100644 index 0000000..6bde487 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5S.txt @@ -0,0 +1,29 @@ +JUnit version 4.11 +.testH5Sget_select_npoints +.testH5Sget_select_type +.testH5Sset_extent_simple +.testH5Sget_select_hyper +.testH5Sget_select_valid +.testH5Sget_select_elem_pointlist +.testH5Sset_extent_none +.testH5Sencode_decode_scalar_dataspace +.testH5Soffset_simple +.testH5Scopy +.testH5Sget_simple_extent_ndims +.testH5Sextent_equal +.testH5Sget_simple_extent_dims +.testH5Sget_simple_extent_type +.testH5Shyper_regular +.testH5Sget_select_bounds +.testH5Sget_select_elem_pointlist_invalid +.testH5Sget_simple_extent_npoints +.testH5Sextent_copy +.testH5Sencode_decode_null_dataspace +.testH5Sis_simple +.testH5Sget_simple_extent_dims_null +.testH5Sselect_none + +Time: XXXX + +OK (23 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Sbasic.txt b/java/test/testfiles/JUnit-TestH5Sbasic.txt new file mode 100644 index 0000000..707878e --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Sbasic.txt @@ -0,0 +1,22 @@ +JUnit version 4.11 +.testH5Sclose_invalid +.testH5Screate_simple_max_default +.testH5Screate_simple_dims_null +.testH5Sdecode_null +.testH5Screate_simple_dims_exceed +.testH5Screate_simple_unlimted_1d +.testH5Screate_simple_dims_invalid +.testH5Screate_scalar +.testH5Screate_simple +.testH5Screate_simple_rank_invalid +.testH5Sget_simple_extent_type_invalid +.testH5Sencode_invalid +.testH5Screate_null +.testH5Screate_simple_extent +.testH5Screate_invalid +.testH5Screate_simple_unlimted + +Time: XXXX + +OK (16 tests) + diff --git a/java/test/testfiles/JUnit-TestH5T.txt b/java/test/testfiles/JUnit-TestH5T.txt new file mode 100644 index 0000000..446adcb --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5T.txt @@ -0,0 +1,19 @@ +JUnit version 4.11 +.testH5Tvlen_create +.testH5Tenum_create_functions +.testH5Tenum_functions +.testH5Tget_class +.testH5Tget_array_ndims +.testH5Tequal_type_error +.testH5Tget_array_dims +.testH5Tset_size +.testH5Tis_variable_str +.testH5Tcompound_functions +.testH5Tget_size +.testH5Tarray_create +.testH5Topaque_functions + +Time: XXXX + +OK (13 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Tbasic.txt b/java/test/testfiles/JUnit-TestH5Tbasic.txt new file mode 100644 index 0000000..131c4f5 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Tbasic.txt @@ -0,0 +1,11 @@ +JUnit version 4.11 +.testH5Tequal_not +.testH5Tcopy +.testH5Tequal +.testH5Torder_size +.testH5Tconvert + +Time: XXXX + +OK (5 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Tparams.txt b/java/test/testfiles/JUnit-TestH5Tparams.txt new file mode 100644 index 0000000..e61f1e4 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Tparams.txt @@ -0,0 +1,76 @@ +JUnit version 4.11 +.testH5Tget_member_type_invalid +.testH5Tenum_insert_null +.testH5Tget_offset_invalid +.testH5Tset_precision_invalid +.testH5Tget_inpad_invalid +.testH5Tenum_nameof_invalid +.testH5Tget_member_value_invalid +.testH5Tenum_nameof_value_null +.testH5Tcreate_invalid +.testH5Tget_strpad_invalid +.testH5Tenum_valueof_invalid +.testH5Tget_fields_null +.testH5Topen_null +.testH5Tpack_invalid +.testH5Tcommit_null +.testH5Tinsert_invalid +.testH5Tenum_valueof_null +.testH5Tset_norm_invalid +.testH5Tlock_invalid +.testH5Tarray_create_invalid +.testH5Tget_member_value_null +.testH5Tset_offset_invalid +.testH5Tget_fields_invalid +.testH5Tequal_invalid +.testH5Tget_ebias_long_invalid +.testH5Tget_cset_invalid +.testH5Tget_size_invalid +.testH5Tset_strpad_invalid +.testH5Tset_ebias_invalid +.testH5Tget_sign_invalid +.testH5Tget_member_index_invalid +.testH5Tget_precision_invalid +.testH5Tset_fields_invalid +.testH5Tcopy_invalid +.testH5Tget_pad_invalid +.testH5Tset_order_invalid +.testH5Tget_member_class_invalid +.testH5Tget_super_invalid +.testH5Tget_class_invalid +.testH5Topen_invalid +.testH5Tget_precision_long_invalid +.testH5Tget_ebias_invalid +.testH5Tget_native_type_invalid +.testH5Tget_fields_length_invalid +.testH5Tget_norm_invalid +.testH5Tenum_nameof_invalid_size +.testH5Tset_pad_invalid +.testH5Tget_pad_null +.testH5Tset_tag_null +.testH5Tget_order_invalid +.testH5Tcommit_invalid +.testH5Tget_array_ndims_invalid +.testH5Tset_tag_invalid +.testH5Tvlen_create_invalid +.testH5Tenum_create_invalid +.testH5Tinsert_null +.testH5Tset_inpad_invalid +.testH5Tenum_valueof_name_null +.testH5Tset_cset_invalid +.testH5Tclose_invalid +.testH5Tget_nmembers_invalid +.testH5Tarray_create_value_null +.testH5Tset_size_invalid +.testH5Tflush_invalid +.testH5Tenum_insert_invalid +.testH5Tget_array_dims_null +.testH5Tget_member_index_null +.testH5Trefresh_invalid +.testH5Tset_sign_invalid +.testH5Tenum_insert_name_null + +Time: XXXX + +OK (70 tests) + diff --git a/java/test/testfiles/JUnit-TestH5Z.txt b/java/test/testfiles/JUnit-TestH5Z.txt new file mode 100644 index 0000000..63fc227 --- /dev/null +++ b/java/test/testfiles/JUnit-TestH5Z.txt @@ -0,0 +1,9 @@ +JUnit version 4.11 +.testH5Zfilter_avail +.testH5Zunregister_predefined +.testH5Zget_filter_info + +Time: XXXX + +OK (3 tests) + diff --git a/release_docs/INSTALL_CMake.txt b/release_docs/INSTALL_CMake.txt index a2d209a..a5864be 100644 --- a/release_docs/INSTALL_CMake.txt +++ b/release_docs/INSTALL_CMake.txt @@ -12,7 +12,6 @@ Section IV: Further considerations Section V: Options for building HDF5 Libraries with CMake command line Section VI: CMake option defaults for HDF5 Section VII: User Defined Options for HDF5 Libraries with CMake -Section VIII: Options for platform configuration files ************************************************************************ @@ -35,7 +34,8 @@ CMake version Note: To change the install prefix from the platform defaults initialize - the CMake variable, CMAKE_INSTALL_PREFIX. + the CMake variable, CMAKE_INSTALL_PREFIX. Users of build scripts + will use the INSTALLDIR option. ======================================================================== @@ -89,14 +89,14 @@ To build HDF5 with the SZIP and ZLIB external libraries you will need to: 5. From the "myhdfstuff" directory execute the CTest Script with the following options: + On 32-bit Windows with Visual Studio 2017, execute: + ctest -S HDF5config.cmake,BUILD_GENERATOR=VS2017 -C Release -VV -O hdf5.log + On 64-bit Windows with Visual Studio 2017, execute: + ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201764 -C Release -VV -O hdf5.log On 32-bit Windows with Visual Studio 2015, execute: ctest -S HDF5config.cmake,BUILD_GENERATOR=VS2015 -C Release -VV -O hdf5.log On 64-bit Windows with Visual Studio 2015, execute: ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201564 -C Release -VV -O hdf5.log - On 32-bit Windows with Visual Studio 2013, execute: - ctest -S HDF5config.cmake,BUILD_GENERATOR=VS2013 -C Release -VV -O hdf5.log - On 64-bit Windows with Visual Studio 2013, execute: - ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201364 -C Release -VV -O hdf5.log On Linux and Mac, execute: ctest -S HDF5config.cmake,BUILD_GENERATOR=Unix -C Release -VV -O hdf5.log The supplied build scripts are versions of the above. @@ -167,6 +167,14 @@ To build HDF5 with the SZIP and ZLIB external libraries you will need to: By default the installation will create the bin, include, lib and cmake folders in the <install destination directory>/HDF_Group/HDF5/1.10."X" + The <install destination directory> depends on the build platform; + Windows will set the default to: + C:/Program Files/HDF_Group/HDF5/1.10."X" + Linux will set the default to: + "myhdfstuff/HDF_Group/HDF5/1.10."X" + The default can be changed by adding ",INSTALLDIR=<my new dir>" to the + "ctest -S HDF5config.cmake..." command. For example on linux: + ctest -S HDF5config.cmake,INSTALLDIR=/usr/local/myhdf5,BUILD_GENERATOR=Unix -C Release -VV -O hdf5.log ======================================================================== @@ -651,332 +659,6 @@ UserMacros.cmake file. Then enable the option to the CMake configuration, build and test process. ======================================================================== -VIII. Options for Platform Configuration Files -======================================================================== - -Below is the HDF5config.cmake and HDF5options.cmake ctest scripts. -Execute: - ctest -S HDF5config.cmake,BUILD_GENERATOR=xxx -C Release -VV -O hdf5.log -The same scripts can be used on Linux, Mac OSX or a Windows machine by -adding an option (${CTEST_SCRIPT_ARG}) to the platform configuration script. - - -############################################################################################# -### ${CTEST_SCRIPT_ARG} is of the form OPTION=VALUE ### -### BUILD_GENERATOR required [Unix, VS2017, VS201764, VS2015, VS201564, VS2013, VS201364] ### -### ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201764 -C Release -VV -O hdf5.log ### -############################################################################################# - -cmake_minimum_required (VERSION 3.10) -############################################################################ -# Usage: -# ctest -S HDF5config.cmake,OPTION=VALUE -C Release -VV -O test.log -# where valid options for OPTION are: -# BUILD_GENERATOR - The cmake build generator: -# Unix * Unix Makefiles -# VS2017 * Visual Studio 15 2017 -# VS201764 * Visual Studio 15 2017 Win64 -# VS2015 * Visual Studio 14 2015 -# VS201564 * Visual Studio 14 2015 Win64 -# VS2013 * Visual Studio 12 2013 -# VS201364 * Visual Studio 12 2013 Win64 -# -# INSTALLDIR - root folder where hdf5 is installed -# CTEST_CONFIGURATION_TYPE - Release, Debug, etc -# CTEST_SOURCE_NAME - source folder -############################################################################## - -set (CTEST_SOURCE_VERSION "1.11.0") -set (CTEST_SOURCE_VERSEXT "") - -############################################################################## -# handle input parameters to script. -#BUILD_GENERATOR - which CMake generator to use, required -#INSTALLDIR - HDF5-1.10.0 root folder -#CTEST_CONFIGURATION_TYPE - Release, Debug, RelWithDebInfo -#CTEST_SOURCE_NAME - name of source folder; HDF5-1.10.0 -if (DEFINED CTEST_SCRIPT_ARG) - # transform ctest script arguments of the form - # script.ctest,var1=value1,var2=value2 - # to variables with the respective names set to the respective values - string (REPLACE "," ";" script_args "${CTEST_SCRIPT_ARG}") - foreach (current_var ${script_args}) - if ("${current_var}" MATCHES "^([^=]+)=(.+)$") - set ("${CMAKE_MATCH_1}" "${CMAKE_MATCH_2}") - endif () - endforeach () -endif () - -# build generator must be defined -if (NOT DEFINED BUILD_GENERATOR) - message (FATAL_ERROR "BUILD_GENERATOR must be defined - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364") -endif () - -################################################################### -### Following Line is one of [Release, RelWithDebInfo, Debug] ##### -set (CTEST_CONFIGURATION_TYPE "$ENV{CMAKE_CONFIG_TYPE}") -################################################################### - -if (NOT DEFINED INSTALLDIR) - if (WIN32) - set (INSTALLDIR "C:/Program Files/HDF_Group/HDF5/${CTEST_SOURCE_VERSION}") - else () - set (INSTALLDIR "${CTEST_SCRIPT_DIRECTORY}/HDF_Group/HDF5/${CTEST_SOURCE_VERSION}") - endif () -endif () -if (NOT DEFINED CTEST_CONFIGURATION_TYPE) - set (CTEST_CONFIGURATION_TYPE "Release") -endif () -if (NOT DEFINED CTEST_SOURCE_NAME) - set (CTEST_SOURCE_NAME "hdf5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}") -endif () -if (NOT DEFINED STATIC_ONLY) - set (STATICONLYLIBRARIES "YES") -else () - set (STATICONLYLIBRARIES "NO") -endif () -if (NOT DEFINED FORTRAN_LIBRARIES) - set (FORTRANLIBRARIES "NO") -else () - set(FORTRANLIBRARIES "YES") -endif () -if (NOT DEFINED JAVA_LIBRARIES) - set (JAVALIBRARIES "NO") -else () - set (JAVALIBRARIES "YES") -endif () - -set (CTEST_BINARY_NAME "build") -set (CTEST_DASHBOARD_ROOT "${CTEST_SCRIPT_DIRECTORY}") -if (WIN32) - set (CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_SOURCE_NAME}") - set (CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_BINARY_NAME}") -else () - set (CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_SOURCE_NAME}") - set (CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_BINARY_NAME}") -endif () - -################################################################### -######### Following describes compiler ############ -if (WIN32) - set (SITE_OS_NAME "Windows") - set (SITE_OS_VERSION "WIN7") - if (${BUILD_GENERATOR} STREQUAL "VS201764") - set (CTEST_CMAKE_GENERATOR "Visual Studio 15 2017 Win64") - set (SITE_OS_BITS "64") - set (SITE_COMPILER_NAME "vs2017") - set (SITE_COMPILER_VERSION "15") - elseif (${BUILD_GENERATOR} STREQUAL "VS2017") - set (CTEST_CMAKE_GENERATOR "Visual Studio 15 2017") - set (SITE_OS_BITS "32") - set (SITE_COMPILER_NAME "vs2017") - set (SITE_COMPILER_VERSION "15") - elseif (${BUILD_GENERATOR} STREQUAL "VS201564") - set (CTEST_CMAKE_GENERATOR "Visual Studio 14 2015 Win64") - set (SITE_OS_BITS "64") - set (SITE_COMPILER_NAME "vs2015") - set (SITE_COMPILER_VERSION "14") - elseif (${BUILD_GENERATOR} STREQUAL "VS2015") - set (CTEST_CMAKE_GENERATOR "Visual Studio 14 2015") - set (SITE_OS_BITS "32") - set (SITE_COMPILER_NAME "vs2015") - set (SITE_COMPILER_VERSION "14") - elseif (${BUILD_GENERATOR} STREQUAL "VS201364") - set (CTEST_CMAKE_GENERATOR "Visual Studio 12 2013 Win64") - set (SITE_OS_BITS "64") - set (SITE_COMPILER_NAME "vs2013") - set (SITE_COMPILER_VERSION "12") - elseif (${BUILD_GENERATOR} STREQUAL "VS2013") - set (CTEST_CMAKE_GENERATOR "Visual Studio 12 2013") - set (SITE_OS_BITS "32") - set (SITE_COMPILER_NAME "vs2013") - set (SITE_COMPILER_VERSION "12") - elseif (${BUILD_GENERATOR} STREQUAL "VS201264") - set (CTEST_CMAKE_GENERATOR "Visual Studio 11 2012 Win64") - set (SITE_OS_BITS "64") - set (SITE_COMPILER_NAME "vs2012") - set (SITE_COMPILER_VERSION "11") - elseif (${BUILD_GENERATOR} STREQUAL "VS2012") - set (CTEST_CMAKE_GENERATOR "Visual Studio 11 2012") - set (SITE_OS_BITS "32") - set (SITE_COMPILER_NAME "vs2012") - set (SITE_COMPILER_VERSION "11") - else () - message (FATAL_ERROR "Invalid BUILD_GENERATOR must be - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364") - endif () -## Set the following to unique id your computer ## - set (CTEST_SITE "WIN7${BUILD_GENERATOR}.XXXX") -else () - set (CTEST_CMAKE_GENERATOR "Unix Makefiles") -## Set the following to unique id your computer ## - if (APPLE) - set (CTEST_SITE "MAC.XXXX") - else () - set (CTEST_SITE "LINUX.XXXX") - endif () - if (APPLE) - execute_process (COMMAND xcrun --find cc OUTPUT_VARIABLE XCODE_CC OUTPUT_STRIP_TRAILING_WHITESPACE) - execute_process (COMMAND xcrun --find c++ OUTPUT_VARIABLE XCODE_CXX OUTPUT_STRIP_TRAILING_WHITESPACE) - set (ENV{CC} "${XCODE_CC}") - set (ENV{CXX} "${XCODE_CXX}") - set (CTEST_USE_LAUNCHERS 1) - set (RR_WARNINGS_COMMON "-Wno-format-nonliteral -Wno-cast-align -Wno-unused -Wno-unused-variable -Wno-unused-function -Wno-self-assign -Wno-unused-parameter -Wno-sign-compare") - set (RR_WARNINGS_C "${RR_WARNINGS_COMMON} -Wno-deprecated-declarations -Wno-uninitialized") - set (RR_WARNINGS_CXX "${RR_WARNINGS_COMMON} -Woverloaded-virtual -Wshadow -Wwrite-strings -Wc++11-compat") - set (RR_FLAGS_COMMON "-g -O0 -fstack-protector-all -D_FORTIFY_SOURCE=2") - set (RR_FLAGS_C "${RR_FLAGS_COMMON}") - set (RR_FLAGS_CXX "${RR_FLAGS_COMMON}") - set (ENV{CFLAGS} "${RR_WARNINGS_C} ${RR_FLAGS_C}") - set (ENV{CXXFLAGS} "${RR_WARNINGS_CXX} ${RR_FLAGS_CXX}") - endif () -endif () -################################################################### - -################################################################### -######### Following is for submission to CDash ############ -################################################################### -set (MODEL "Experimental") -################################################################### - -################################################################### -##### Following controls CDash submission ##### -#set (LOCAL_SUBMIT "TRUE") -##### Following controls test process ##### -#set (LOCAL_SKIP_TEST "TRUE") -#set (LOCAL_MEMCHECK_TEST "TRUE") -#set (LOCAL_COVERAGE_TEST "TRUE") -##### Following controls cpack command ##### -#set (LOCAL_NO_PACKAGE "TRUE") -##### Following controls source update ##### -#set (LOCAL_UPDATE "TRUE") -set (REPOSITORY_URL "https://git@bitbucket.hdfgroup.org/scm/hdffv/hdf5.git") -set (REPOSITORY_BRANCH "develop") - -#uncomment to use a compressed source file: *.tar on linux or mac *.zip on windows -#set(CTEST_USE_TAR_SOURCE "${CTEST_SOURCE_VERSION}") -################################################################### - -################################################################### -if (${STATICONLYLIBRARIES}) - set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF") - ######### Following describes computer ############ - ## following is optional to describe build ## - set (SITE_BUILDNAME_SUFFIX "STATIC") -endif () -################################################################### -#### fortran #### -if (${FORTRANLIBRARIES}) - set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON") - ### enable Fortran 2003 depends on HDF5_BUILD_FORTRAN - set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=ON") -else () - set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF") - ### enable Fortran 2003 depends on HDF5_BUILD_FORTRAN - set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=OFF") -endif () -#### java #### -if (${JAVALIBRARIES}) - set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=ON") -else () - set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF") -endif () - -### change install prefix -set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=${INSTALLDIR}") -set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCTEST_CONFIGURATION_TYPE:STRING=$ENV{CMAKE_CONFIG_TYPE}") - -################################################################### - -if (WIN32) - set (BINFILEBASE "HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-win${SITE_OS_BITS}") - include (${CTEST_SCRIPT_DIRECTORY}\\HDF5options.cmake) - include (${CTEST_SCRIPT_DIRECTORY}\\CTestScript.cmake) - if (EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.exe") - file (COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.exe" DESTINATION ${CTEST_SCRIPT_DIRECTORY}) - endif () - if (EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.msi") - file (COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.msi" DESTINATION ${CTEST_SCRIPT_DIRECTORY}) - endif () - if (EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.zip") - file (COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.zip" DESTINATION ${CTEST_SCRIPT_DIRECTORY}) - endif () -else () - set (BINFILEBASE "HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}") - include (${CTEST_SCRIPT_DIRECTORY}/HDF5options.cmake) - include (${CTEST_SCRIPT_DIRECTORY}/CTestScript.cmake) - if (APPLE) - if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.dmg") - file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.dmg" DESTINATION ${CTEST_SCRIPT_DIRECTORY}) - endif () - if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.tar.gz") - file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY}) - endif () - if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.sh") - file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY}) - endif () - else () - if (CYGWIN) - if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.sh") - file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY}) - endif () - if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.tar.gz") - file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY}) - endif () - else () - if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.sh") - file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY}) - endif () - if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.tar.gz") - file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY}) - endif () - endif () - endif () -endif () - -HDF5options.cmake: -############################################################################################# -#### Change default configuration of options in config/cmake/cacheinit.cmake file ### -#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ### -############################################################################################# - -### uncomment/comment and change the following lines for other configuration options - -############################################################################################# -#### alternate toolsets #### -#set(CMAKE_GENERATOR_TOOLSET "Intel C++ Compiler 17.0") - -############################################################################################# -#### ext libraries #### - -### ext libs from tgz -set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}") -### ext libs from git -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=GIT") -### ext libs on system -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include") -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include") - -### disable ext zlib building -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF") -### disable ext szip building -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF") -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF") - -############################################################################################# -### disable test program builds - -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF") - -############################################################################################# -### disable packaging - -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON") -### Create install package with external libraries (szip, zlib) -set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON") - -############################################################################################# - -======================================================================== For further assistance, send email to help@hdfgroup.org ======================================================================== diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index 43d631b..48fbef0 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -121,6 +121,25 @@ Bug Fixes since HDF5-1.10.2 release Configuration ------------- + - Moved the location of gcc attribute. + + The gcc attribute(no_sanitize), named as the macro HDF_NO_UBSAN, + was located after the function name. Builds with GCC 7 did not + indicate any problem, but GCC 8 issued errors. Moved the + attribute before the function name, as required. + + (ADB 2018/05/22, HDFFV-10473) + + - Reworked java test suite into individual JUnit tests. + + Testing the whole suite of java unit tests in a single JUnit run + made it difficult to determine actual failures when tests would fail. + Running each file set of tests individually, allows individual failures + to be diagnosed easier. A side benefit is that tests for optional components + of the library can be disabled if not configured. + + (ADB 2018/05/16, HDFFV-9739) + - Converted CMake global commands ADD_DEFINITIONS and INCLUDE_DIRECTORIES to use target_* type commands. This change modernizes the CMake usage in the HDF5 library. @@ -135,6 +154,19 @@ Bug Fixes since HDF5-1.10.2 release (ADB 2018/05/08) + - The --enable-debug/production configure flags are listed as 'deprecated' + when they should really be listed as 'removed'. + + In the autotools overhaul several years ago, we removed these flags and + implemented a new --enable-build-mode= flag. This was done because we + changed the semantics of the modes and didn't want users to silently + be exposed to them. The newer system is also more flexible and us to + add other modes (like 'clean'). + + The --enable-debug/production flags are now listed as removed. + + (DER - 2018/05/31, HDFFV-10505) + Performance ------------- - @@ -192,25 +224,18 @@ Supported Platforms (emu) Sun Fortran 95 8.6 SunOS_sparc Sun C++ 5.12 SunOS_sparc - Windows 7 Visual Studio 2012 w/ Intel Fortran 15 (cmake) - Visual Studio 2013 w/ Intel Fortran 15 (cmake) - Visual Studio 2015 w/ Intel Fortran 16 (cmake) + Windows 7 Visual Studio 2015 w/ Intel Fortran 16 (cmake) Windows 7 x64 Visual Studio 2012 w/ Intel Fortran 15 (cmake) Visual Studio 2013 w/ Intel Fortran 15 (cmake) Visual Studio 2015 w/ Intel Fortran 16 (cmake) Visual Studio 2015 w/ Intel C, Fortran 2017 (cmake) Visual Studio 2015 w/ MSMPI 8 (cmake) - Cygwin(CYGWIN_NT-6.1 2.8.0(0.309/5/3) - gcc and gfortran compilers (GCC 5.4.0) - (cmake and autotools) Windows 10 Visual Studio 2015 w/ Intel Fortran 16 (cmake) - Cygwin(CYGWIN_NT-6.1 2.8.0(0.309/5/3) - gcc and gfortran compilers (GCC 5.4.0) - (cmake and autotools) Windows 10 x64 Visual Studio 2015 w/ Intel Fortran 16 (cmake) + Visual Studio 2017 w/ Intel Fortran 18 (cmake) Mac OS X Yosemite 10.10.5 Apple clang/clang++ version 6.1 from Xcode 7.0 64-bit gfortran GNU Fortran (GCC) 4.9.2 diff --git a/release_docs/USING_CMake_Examples.txt b/release_docs/USING_CMake_Examples.txt index f188ab3..6f744d9 100644 --- a/release_docs/USING_CMake_Examples.txt +++ b/release_docs/USING_CMake_Examples.txt @@ -48,6 +48,8 @@ Default installation process: with the CTEST_SOURCE_NAME script option. The default installation folder is defined as "@CMAKE_INSTALL_PREFIX@". It can be changed with the INSTALLDIR script option. + (Note: Windows has issues with spaces and paths -The path will need to + be set correctly.) The default ctest configuration is defined as "Release". It can be changed with the CTEST_CONFIGURATION_TYPE script option. Note that this must be the same as the value used with the -C command line option. diff --git a/release_docs/USING_HDF5_CMake.txt b/release_docs/USING_HDF5_CMake.txt index 7d9a585..73a24d9 100644 --- a/release_docs/USING_HDF5_CMake.txt +++ b/release_docs/USING_HDF5_CMake.txt @@ -225,232 +225,6 @@ Also available at the HDF web site is a CMake application framework template. You can quickly add files to the framework and execute the script to compile your application with an installed HDF5 binary. -======================================================================== -ctest use of HDF5_Examples.cmake and HDF5_Examples_options.cmake -======================================================================== - -cmake_minimum_required (VERSION 3.10) -############################################################################################################### -# This script will build and run the examples from a folder -# Execute from a command line: -# ctest -S HDF5_Examples.cmake,OPTION=VALUE -C Release -VV -O test.log -############################################################################################################### - -set(CTEST_CMAKE_GENERATOR "@CMAKE_GENERATOR@") -if("@CMAKE_GENERATOR_TOOLSET@") - set(CMAKE_GENERATOR_TOOLSET "@CMAKE_GENERATOR_TOOLSET@") -endif() -set(CTEST_DASHBOARD_ROOT ${CTEST_SCRIPT_DIRECTORY}) - -# handle input parameters to script. -#INSTALLDIR - HDF5 root folder -#CTEST_CONFIGURATION_TYPE - Release, Debug, RelWithDebInfo -#CTEST_SOURCE_NAME - name of source folder; HDF5Examples -if(DEFINED CTEST_SCRIPT_ARG) - # transform ctest script arguments of the form - # script.ctest,var1=value1,var2=value2 - # to variables with the respective names set to the respective values - string(REPLACE "," ";" script_args "${CTEST_SCRIPT_ARG}") - foreach(current_var ${script_args}) - if("${current_var}" MATCHES "^([^=]+)=(.+)$") - set("${CMAKE_MATCH_1}" "${CMAKE_MATCH_2}") - endif() - endforeach() -endif() - -################################################################### -### Following Line is one of [Release, RelWithDebInfo, Debug] ##### -set(CTEST_CONFIGURATION_TYPE "$ENV{CMAKE_CONFIG_TYPE}") -if(NOT DEFINED CTEST_CONFIGURATION_TYPE) - set(CTEST_CONFIGURATION_TYPE "Release") -endif() -set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCTEST_CONFIGURATION_TYPE:STRING=${CTEST_CONFIGURATION_TYPE}") -################################################################## - -if(NOT DEFINED INSTALLDIR) - set(INSTALLDIR "@CMAKE_INSTALL_PREFIX@") -endif() - -if(NOT DEFINED CTEST_SOURCE_NAME) - set(CTEST_SOURCE_NAME "HDF5Examples") -endif() - -if(NOT DEFINED HDF_LOCAL) - set(CDASH_LOCAL "NO") -else() - set(CDASH_LOCAL "YES") -endif() -if(NOT DEFINED CTEST_SITE) - set(CTEST_SITE "local") -endif() -if(NOT DEFINED CTEST_BUILD_NAME) - set(CTEST_BUILD_NAME "examples") -endif() -set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDNAME:STRING=${CTEST_BUILD_NAME}") - -#TAR_SOURCE - name of tarfile -#if(NOT DEFINED TAR_SOURCE) -# set(CTEST_USE_TAR_SOURCE "HDF5Examples-1.10.7-Source") -#endif() - -############################################################################################################### -if(WIN32) - set(SITE_OS_NAME "Windows") - set(ENV{HDF5_DIR} "${INSTALLDIR}/cmake") - set(CTEST_BINARY_NAME ${CTEST_SOURCE_NAME}\\build) - set(CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_SOURCE_NAME}") - set(CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_BINARY_NAME}") -else() - set(ENV{HDF5_DIR} "${INSTALLDIR}/share/cmake") - set(ENV{LD_LIBRARY_PATH} "${INSTALLDIR}/lib") - set(CTEST_BINARY_NAME ${CTEST_SOURCE_NAME}/build) - set(CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_SOURCE_NAME}") - set(CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_BINARY_NAME}") -endif() -if(${CDASH_LOCAL}) - set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCDASH_LOCAL:BOOL=ON") -endif() -set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_NAME:STRING=@HDF5_PACKAGE@@HDF_PACKAGE_EXT@") - -############################################################################################################### -# For any comments please contact help@hdfgroup.org -# -############################################################################################################### - -############################################################################################# -#### Change default configuration of options in config/cmake/cacheinit.cmake file ### -#### format for file: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ### -############################################################################################# -if(WIN32) - include(${CTEST_SCRIPT_DIRECTORY}\\HDF5_Examples_options.cmake) -else() - include(${CTEST_SCRIPT_DIRECTORY}/HDF5_Examples_options.cmake) -endif() - -#----------------------------------------------------------------------------- -set (CTEST_CMAKE_COMMAND "\"${CMAKE_COMMAND}\"") -## -------------------------- -if (CTEST_USE_TAR_SOURCE) - ## Uncompress source if tar or zip file provided - ## -------------------------- - if (WIN32) - message (STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_USE_TAR_SOURCE}.zip]") - execute_process (COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}\\${CTEST_USE_TAR_SOURCE}.zip RESULT_VARIABLE rv) - else () - message (STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_USE_TAR_SOURCE}.tar]") - execute_process (COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE}.tar RESULT_VARIABLE rv) - endif () - - if (NOT rv EQUAL 0) - message (STATUS "extracting... [error-(${rv}) clean up]") - file (REMOVE_RECURSE "${CTEST_SOURCE_DIRECTORY}") - message (FATAL_ERROR "error: extract of ${CTEST_SOURCE_NAME} failed") - endif () -endif () - -#----------------------------------------------------------------------------- -## Clear the build directory -## -------------------------- -set (CTEST_START_WITH_EMPTY_BINARY_DIRECTORY TRUE) -if (EXISTS "${CTEST_BINARY_DIRECTORY}" AND IS_DIRECTORY "${CTEST_BINARY_DIRECTORY}") - ctest_empty_binary_directory (${CTEST_BINARY_DIRECTORY}) -else () - file (MAKE_DIRECTORY "${CTEST_BINARY_DIRECTORY}") -endif () - -# Use multiple CPU cores to build -include (ProcessorCount) -ProcessorCount (N) -if (NOT N EQUAL 0) - if (NOT WIN32) - set (CTEST_BUILD_FLAGS -j${N}) - endif () - set (ctest_test_args ${ctest_test_args} PARALLEL_LEVEL ${N}) -endif () -set (CTEST_CONFIGURE_COMMAND - "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_CONFIGURATION_TYPE} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_SOURCE_DIRECTORY}\"" -) - -#----------------------------------------------------------------------------- -## -- set output to english -set ($ENV{LC_MESSAGES} "en_EN") - -#----------------------------------------------------------------------------- -configure_file (${CTEST_SOURCE_DIRECTORY}/config/cmake/CTestCustom.cmake ${CTEST_BINARY_DIRECTORY}/CTestCustom.cmake) -ctest_read_custom_files ("${CTEST_BINARY_DIRECTORY}") -## NORMAL process -## -------------------------- -ctest_start (Experimental) -ctest_configure (BUILD "${CTEST_BINARY_DIRECTORY}") -if (LOCAL_SUBMIT) - ctest_submit (PARTS Configure Notes) -endif () -ctest_build (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND) -if (LOCAL_SUBMIT) - ctest_submit (PARTS Build) -endif () -ctest_test (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args} RETURN_VALUE res) -if (LOCAL_SUBMIT) - ctest_submit (PARTS Test) -endif () -if (res GREATER 0) - message (FATAL_ERROR "tests FAILED") -endif () -#----------------------------------------------------------------------------- -############################################################################################################## - -############################################################################################################## -#### HDF5_Examples_options.cmake ### -#### Change default configuration of options in config/cmake/cacheinit.cmake file ### -############################################################################################################## -############################################################################################# -#### Change default configuration of options in config/cmake/cacheinit.cmake file ### -#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ### -#### DEFAULT: ### -#### BUILD_SHARED_LIBS:BOOL=OFF ### -#### HDF_BUILD_C:BOOL=ON ### -#### HDF_BUILD_CXX:BOOL=OFF ### -#### HDF_BUILD_FORTRAN:BOOL=OFF ### -#### HDF_BUILD_JAVA:BOOL=OFF ### -#### BUILD_TESTING:BOOL=OFF ### -#### HDF_ENABLE_PARALLEL:BOOL=OFF ### -#### HDF_ENABLE_THREADSAFE:BOOL=OFF ### -############################################################################################# - -### uncomment/comment and change the following lines for other configuration options -### build with shared libraries -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=ON") - -############################################################################################# -#### languages #### -### disable C builds -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF_BUILD_C:BOOL=OFF") - -### enable C++ builds -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF_BUILD_CXX:BOOL=ON") - -### enable Fortran builds -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF_BUILD_FORTRAN:BOOL=ON") - -### enable JAVA builds -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF_BUILD_JAVA:BOOL=ON") - -############################################################################################# -### enable parallel program builds -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF_ENABLE_PARALLEL:BOOL=ON") - -############################################################################################# -### enable threadsafe program builds -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF_ENABLE_THREADSAFE:BOOL=ON") - -############################################################################################# -### enable test program builds, requires reference files in testfiles subdirectory -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=ON") -#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCOMPARE_TESTING:BOOL=ON") - -############################################################################################# - - ======================================================================== For further assistance, send email to help@hdfgroup.org diff --git a/release_docs/USING_HDF5_VS.txt b/release_docs/USING_HDF5_VS.txt index 3019631..ba22753 100644 --- a/release_docs/USING_HDF5_VS.txt +++ b/release_docs/USING_HDF5_VS.txt @@ -15,9 +15,9 @@ NOTE: Building applications with the dynamic/shared hdf5 libraries requires The following two sections are helpful if you do not use CMake to build your applications. -======================================================================== -Using Visual Studio 2010 with HDF5 Libraries built with Visual Studio 2010 -======================================================================== +============================================================================================== +Using Visual Studio 2010 and above with HDF5 Libraries built with Visual Studio 2010 and above +============================================================================================== 1. Set up path for external libraries and headers @@ -79,13 +79,9 @@ Using Visual Studio 2008 with HDF5 Libraries built with Visual Studio 2008 3.1 FAQ Many other common questions and hints are located online and being updated - in the HDF5 FAQ. For Windows-specific questions, please see: - - https://support.hdfgroup.org/HDF5/faq/windows.html - - For all other general questions, you can look in the general FAQ: + in the HDF Knowledge Base, please see: - https://support.hdfgroup.org/HDF5/HDF5-FAQ.html + https://portal.hdfgroup.org/display/knowledge/HDF+Knowledge+Base ************************************************************************ Please send email to help@hdfgroup.org for further assistance. diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt index 9ff70f9..9a1f545 100644 --- a/src/CMakeLists.txt +++ b/src/CMakeLists.txt @@ -450,6 +450,7 @@ set (H5O_SOURCES ${HDF5_SRC_DIR}/H5Ocont.c ${HDF5_SRC_DIR}/H5Ocopy.c ${HDF5_SRC_DIR}/H5Odbg.c + ${HDF5_SRC_DIR}/H5Odeprec.c ${HDF5_SRC_DIR}/H5Odrvinfo.c ${HDF5_SRC_DIR}/H5Odtype.c ${HDF5_SRC_DIR}/H5Oefl.c @@ -245,7 +245,7 @@ H5B_create(H5F_t *f, const H5B_class_t *type, void *udata, haddr_t *addr_p/*out* NULL == (bt->child = H5FL_SEQ_MALLOC(haddr_t, (size_t)shared->two_k))) HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "memory allocation failed for B-tree root node") if(HADDR_UNDEF == (*addr_p = H5MF_alloc(f, H5FD_MEM_BTREE, (hsize_t)shared->sizeof_rnode))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "file allocation failed for B-tree root node") + HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, FAIL, "file allocation failed for B-tree root node") /* * Cache the new B-tree node. @@ -320,7 +320,7 @@ H5B_find(H5F_t *f, const H5B_class_t *type, haddr_t addr, void *udata) /* Get shared info for B-tree */ if(NULL == (rc_shared = (type->get_shared)(f, udata))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object") + HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object") shared = (H5B_shared_t *)H5UC_GET_OBJ(rc_shared); HDassert(shared); @@ -332,7 +332,7 @@ H5B_find(H5F_t *f, const H5B_class_t *type, haddr_t addr, void *udata) cache_udata.type = type; cache_udata.rc_shared = rc_shared; if(NULL == (bt = (H5B_t *)H5AC_protect(f, H5AC_BT, addr, &cache_udata, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to load B-tree node") + HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to load B-tree node") rt = bt->nchildren; while(lt < rt && cmp) { @@ -1300,7 +1300,7 @@ H5B__remove_helper(H5F_t *f, haddr_t addr, const H5B_class_t *type, int level, if((int)(ret_value = H5B__remove_helper(f, bt->child[idx], type, level + 1, H5B_NKEY(bt, shared, idx)/*out*/, lt_key_changed/*out*/, udata, H5B_NKEY(bt, shared, idx + 1)/*out*/, - rt_key_changed/*out*/)) < 0) + rt_key_changed/*out*/)) < 0) HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, H5B_INS_ERROR, "key not found in subtree") } else if(type->remove) { /* diff --git a/src/H5B2dbg.c b/src/H5B2dbg.c index c4f56e5..0e3ebd5 100644 --- a/src/H5B2dbg.c +++ b/src/H5B2dbg.c @@ -109,7 +109,7 @@ H5B2__hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, /* Load the B-tree header */ if(NULL == (hdr = H5B2__hdr_protect(f, addr, f, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load B-tree header") /* Set file pointer for this B-tree operation */ hdr->f = f; @@ -208,7 +208,7 @@ H5B2__int_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, /* Load the B-tree header */ if(NULL == (hdr = H5B2__hdr_protect(f, hdr_addr, f, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load v2 B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load v2 B-tree header") /* Set file pointer for this B-tree operation */ hdr->f = f; @@ -220,7 +220,7 @@ H5B2__int_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, node_ptr.addr = addr; H5_CHECKED_ASSIGN(node_ptr.node_nrec, uint16_t, nrec, unsigned) if(NULL == (internal = H5B2__protect_internal(hdr, NULL, &node_ptr, (uint16_t)depth, FALSE, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load B-tree internal node") + HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load B-tree internal node") /* Print opening message */ HDfprintf(stream, "%*sv2 B-tree Internal Node...\n", indent, ""); @@ -320,7 +320,7 @@ H5B2__leaf_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, /* Load the B-tree header */ if(NULL == (hdr = H5B2__hdr_protect(f, hdr_addr, f, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect v2 B-tree header") + HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect v2 B-tree header") /* Set file pointer for this B-tree operation */ hdr->f = f; @@ -332,7 +332,7 @@ H5B2__leaf_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, node_ptr.addr = addr; H5_CHECKED_ASSIGN(node_ptr.node_nrec, uint16_t, nrec, unsigned) if(NULL == (leaf = H5B2__protect_leaf(hdr, NULL, &node_ptr, FALSE, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect B-tree leaf node") + HGOTO_ERROR(H5E_BTREE, H5E_CANTPROTECT, FAIL, "unable to protect B-tree leaf node") /* Print opening message */ HDfprintf(stream, "%*sv2 B-tree Leaf Node...\n", indent, ""); diff --git a/src/H5B2pkg.h b/src/H5B2pkg.h index 552cebb..27229f1 100644 --- a/src/H5B2pkg.h +++ b/src/H5B2pkg.h @@ -467,7 +467,7 @@ H5_DLL herr_t H5B2__assert_leaf2(const H5B2_hdr_t *hdr, const H5B2_leaf_t *leaf, /* Testing routines */ #ifdef H5B2_TESTING -H5_DLL herr_t H5B2_get_root_addr_test(H5B2_t *bt2, haddr_t *root_addr); +H5_DLL herr_t H5B2__get_root_addr_test(H5B2_t *bt2, haddr_t *root_addr); H5_DLL int H5B2__get_node_depth_test(H5B2_t *bt2, void *udata); H5_DLL herr_t H5B2__get_node_info_test(H5B2_t *bt2, void *udata, H5B2_node_info_test_t *ninfo); diff --git a/src/H5B2test.c b/src/H5B2test.c index 49fe3af..0f4a39c 100644 --- a/src/H5B2test.c +++ b/src/H5B2test.c @@ -469,12 +469,11 @@ H5B2__test2_debug(FILE *stream, int indent, int fwidth, const void *record, /*------------------------------------------------------------------------- - * Function: H5B2_get_root_addr_test + * Function: H5B2__get_root_addr_test * - * Purpose: Retrieve the root node's address + * Purpose: Retrieve the root node's address * - * Return: Success: non-negative - * Failure: negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Saturday, February 26, 2005 @@ -482,7 +481,7 @@ H5B2__test2_debug(FILE *stream, int indent, int fwidth, const void *record, *------------------------------------------------------------------------- */ herr_t -H5B2_get_root_addr_test(H5B2_t *bt2, haddr_t *root_addr) +H5B2__get_root_addr_test(H5B2_t *bt2, haddr_t *root_addr) { FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -494,16 +493,15 @@ H5B2_get_root_addr_test(H5B2_t *bt2, haddr_t *root_addr) *root_addr = bt2->hdr->root.addr; FUNC_LEAVE_NOAPI(SUCCEED) -} /* H5B2_get_root_addr_test() */ +} /* H5B2__get_root_addr_test() */ /*------------------------------------------------------------------------- - * Function: H5B2__get_node_info_test + * Function: H5B2__get_node_info_test * - * Purpose: Determine information about a node holding a record in the B-tree + * Purpose: Determine information about a node holding a record in the B-tree * - * Return: Success: non-negative - * Failure: negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Thursday, August 31, 2006 @@ -647,15 +645,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5B2__get_node_depth_test + * Function: H5B2__get_node_depth_test * - * Purpose: Determine the depth of a node holding a record in the B-tree + * Purpose: Determine the depth of a node holding a record in the B-tree * - * Note: Just a simple wrapper around the H5B2__get_node_info_test() routine + * Note: Just a simple wrapper around the H5B2__get_node_info_test() routine * - * Return: Success: non-negative depth of the node where the record - * was found - * Failure: negative + * Return: Success: Non-negative depth of the node where the record + * was found + * + * Failure: -1 * * Programmer: Quincey Koziol * Saturday, August 26, 2006 @@ -675,7 +674,7 @@ H5B2__get_node_depth_test(H5B2_t *bt2, void *udata) /* Get information abou the node */ if(H5B2__get_node_info_test(bt2, udata, &ninfo) < 0) - HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "error looking up node info") + HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, (-1), "error looking up node info") /* Set return value */ ret_value = (int)ninfo.depth; @@ -233,24 +233,10 @@ typedef struct H5CX_t { hbool_t data_transform_valid; /* Whether data transform info is valid */ H5T_vlen_alloc_info_t vl_alloc_info; /* VL datatype alloc info (H5D_XFER_VLEN_*_NAME) */ hbool_t vl_alloc_info_valid; /* Whether VL datatype alloc info is valid */ - hbool_t dcr_flag; /* Direct chunk read flag (H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME) */ - hbool_t dcr_flag_valid; /* Whether direct chunk read flag is valid */ - hsize_t *dcr_offset; /* Direct chunk read offset (H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME) */ - hbool_t dcr_offset_valid; /* Whether direct chunk read offset is valid */ - hbool_t dcw_flag; /* Direct chunk write flag (H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME) */ - hbool_t dcw_flag_valid; /* Whether direct chunk write flag is valid */ - uint32_t dcw_filters; /* Direct chunk write filter flags (H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME) */ - hbool_t dcw_filters_valid; /* Whether direct chunk write filter flags is valid */ - hsize_t *dcw_offset; /* Direct chunk write offset (H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME) */ - hbool_t dcw_offset_valid; /* Whether direct chunk write offset is valid */ - uint32_t dcw_datasize; /* Direct chunk write data size (H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME) */ - hbool_t dcw_datasize_valid; /* Whether direct chunk write data size is valid */ H5T_conv_cb_t dt_conv_cb; /* Datatype conversion struct (H5D_XFER_CONV_CB_NAME) */ hbool_t dt_conv_cb_valid; /* Whether datatype conversion struct is valid */ /* Return-only DXPL properties to return to application */ - uint32_t dcr_filters; /* Direct chunk read filter flags (H5D_XFER_DIRECT_CHUNK_READ_FILTERS_NAME) */ - hbool_t dcr_filters_set; /* Whether direct chunk read filter flags are set */ #ifdef H5_HAVE_PARALLEL H5D_mpio_actual_chunk_opt_mode_t mpio_actual_chunk_opt; /* Chunk optimization mode used for parallel I/O (H5D_MPIO_ACTUAL_CHUNK_OPT_MODE_NAME) */ hbool_t mpio_actual_chunk_opt_set; /* Whether chunk optimization mode used for parallel I/O is set */ @@ -321,12 +307,6 @@ typedef struct H5CX_dxpl_cache_t { H5Z_cb_t filter_cb; /* Filter callback function (H5D_XFER_FILTER_CB_NAME) */ H5Z_data_xform_t *data_transform; /* Data transform info (H5D_XFER_XFORM_NAME) */ H5T_vlen_alloc_info_t vl_alloc_info; /* VL datatype alloc info (H5D_XFER_VLEN_*_NAME) */ - hbool_t dcr_flag; /* Direct chunk read flag (H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME) */ - hsize_t *dcr_offset; /* Direct chunk read offset (H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME) */ - hbool_t dcw_flag; /* Direct chunk write flag (H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME) */ - uint32_t dcw_datasize; /* Direct chunk write data size (H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME) */ - hsize_t *dcw_offset; /* Direct chunk write offset (H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME) */ - uint32_t dcw_filters; /* Direct chunk write filter flags (H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME) */ H5T_conv_cb_t dt_conv_cb; /* Datatype conversion struct (H5D_XFER_CONV_CB_NAME) */ } H5CX_dxpl_cache_t; @@ -469,27 +449,10 @@ H5CX__init_package(void) if(H5P_get(dx_plist, H5D_XFER_VLEN_FREE_INFO_NAME, &H5CX_def_dxpl_cache.vl_alloc_info.free_info) < 0) HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve VL datatype alloc info") - /* Get direct chunk read info */ - if(H5P_get(dx_plist, H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME, &H5CX_def_dxpl_cache.dcr_flag) < 0) - HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve direct chunk read flag") - if(H5P_get(dx_plist, H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME, &H5CX_def_dxpl_cache.dcr_offset) < 0) - HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve direct chunk read offset") - - /* Get direct chunk write info */ - if(H5P_get(dx_plist, H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME, &H5CX_def_dxpl_cache.dcw_flag) < 0) - HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve direct chunk write flag") - if(H5P_get(dx_plist, H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME, &H5CX_def_dxpl_cache.dcw_filters) < 0) - HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve direct chunk write filter mask") - if(H5P_get(dx_plist, H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME, &H5CX_def_dxpl_cache.dcw_offset) < 0) - HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve direct chunk write offset") - if(H5P_get(dx_plist, H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME, &H5CX_def_dxpl_cache.dcw_datasize) < 0) - HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve direct chunk write data size") - /* Get datatype conversion struct */ if(H5P_get(dx_plist, H5D_XFER_CONV_CB_NAME, &H5CX_def_dxpl_cache.dt_conv_cb) < 0) HGOTO_ERROR(H5E_CONTEXT, H5E_CANTGET, FAIL, "Can't retrieve datatype conversion exception callback") - /* Reset the "default LAPL cache" information */ HDmemset(&H5CX_def_lapl_cache, 0, sizeof(H5CX_lapl_cache_t)); @@ -1791,216 +1754,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5CX_get_dcr_flag - * - * Purpose: Retrieves the direct chunk read flag for the current API call context. - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * March 6, 2018 - * - *------------------------------------------------------------------------- - */ -herr_t -H5CX_get_dcr_flag(hbool_t *dcr_flag) -{ - H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity check */ - HDassert(dcr_flag); - HDassert(head && *head); - HDassert(H5P_DEFAULT != (*head)->ctx.dxpl_id); - - H5CX_RETRIEVE_PROP_VALID(dxpl, H5P_DATASET_XFER_DEFAULT, H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME, dcr_flag) - - /* Get the value */ - *dcr_flag = (*head)->ctx.dcr_flag; - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5CX_get_dcr_flag() */ - - -/*------------------------------------------------------------------------- - * Function: H5CX_get_dcr_offset - * - * Purpose: Retrieves the direct chunk read offset for the current API call context. - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * March 6, 2018 - * - *------------------------------------------------------------------------- - */ -herr_t -H5CX_get_dcr_offset(hsize_t **dcr_offset) -{ - H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity check */ - HDassert(dcr_offset); - HDassert(head && *head); - HDassert(H5P_DEFAULT != (*head)->ctx.dxpl_id); - - H5CX_RETRIEVE_PROP_VALID(dxpl, H5P_DATASET_XFER_DEFAULT, H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME, dcr_offset) - - /* Get the value */ - *dcr_offset = (*head)->ctx.dcr_offset; - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5CX_get_dcr_offset() */ - - -/*------------------------------------------------------------------------- - * Function: H5CX_get_dcw_flag - * - * Purpose: Retrieves the direct chunk write flag for the current API call context. - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * March 6, 2018 - * - *------------------------------------------------------------------------- - */ -herr_t -H5CX_get_dcw_flag(hbool_t *dcw_flag) -{ - H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity check */ - HDassert(dcw_flag); - HDassert(head && *head); - HDassert(H5P_DEFAULT != (*head)->ctx.dxpl_id); - - H5CX_RETRIEVE_PROP_VALID(dxpl, H5P_DATASET_XFER_DEFAULT, H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME, dcw_flag) - - /* Get the value */ - *dcw_flag = (*head)->ctx.dcw_flag; - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5CX_get_dcw_flag() */ - - -/*------------------------------------------------------------------------- - * Function: H5CX_get_dcw_filters - * - * Purpose: Retrieves the direct chunk write filter mask for the current API call context. - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * March 6, 2018 - * - *------------------------------------------------------------------------- - */ -herr_t -H5CX_get_dcw_filters(uint32_t *dcw_filters) -{ - H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity check */ - HDassert(dcw_filters); - HDassert(head && *head); - HDassert(H5P_DEFAULT != (*head)->ctx.dxpl_id); - - H5CX_RETRIEVE_PROP_VALID(dxpl, H5P_DATASET_XFER_DEFAULT, H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME, dcw_filters) - - /* Get the value */ - *dcw_filters = (*head)->ctx.dcw_filters; - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5CX_get_dcw_filters() */ - - -/*------------------------------------------------------------------------- - * Function: H5CX_get_dcw_offset - * - * Purpose: Retrieves the direct chunk write offset for the current API call context. - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * March 6, 2018 - * - *------------------------------------------------------------------------- - */ -herr_t -H5CX_get_dcw_offset(hsize_t **dcw_offset) -{ - H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity check */ - HDassert(dcw_offset); - HDassert(head && *head); - HDassert(H5P_DEFAULT != (*head)->ctx.dxpl_id); - - H5CX_RETRIEVE_PROP_VALID(dxpl, H5P_DATASET_XFER_DEFAULT, H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME, dcw_offset) - - /* Get the value */ - *dcw_offset = (*head)->ctx.dcw_offset; - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5CX_get_dcw_offset() */ - - -/*------------------------------------------------------------------------- - * Function: H5CX_get_dcw_datasize - * - * Purpose: Retrieves the direct chunk write data size for the current API call context. - * - * Return: Non-negative on success / Negative on failure - * - * Programmer: Quincey Koziol - * March 6, 2018 - * - *------------------------------------------------------------------------- - */ -herr_t -H5CX_get_dcw_datasize(uint32_t *dcw_datasize) -{ - H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Sanity check */ - HDassert(dcw_datasize); - HDassert(head && *head); - HDassert(H5P_DEFAULT != (*head)->ctx.dxpl_id); - - H5CX_RETRIEVE_PROP_VALID(dxpl, H5P_DATASET_XFER_DEFAULT, H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME, dcw_datasize) - - /* Get the value */ - *dcw_datasize = (*head)->ctx.dcw_datasize; - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5CX_get_dcw_datasize() */ - - -/*------------------------------------------------------------------------- * Function: H5CX_get_dt_conv_cb * * Purpose: Retrieves the datatype conversion exception callback for the current API call context. @@ -2358,38 +2111,6 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5CX_set_nlinks() */ - -/*------------------------------------------------------------------------- - * Function: H5CX_set_dcr_filters - * - * Purpose: Sets the direct chunk read filter flags for the current API call context. - * - * Return: <none> - * - * Programmer: Quincey Koziol - * March 6, 2018 - * - *------------------------------------------------------------------------- - */ -void -H5CX_set_dcr_filters(uint32_t direct_filters) -{ - H5CX_node_t **head = H5CX_get_my_context(); /* Get the pointer to the head of the API context, for this thread */ - - FUNC_ENTER_NOAPI_NOINIT_NOERR - - /* Sanity checks */ - HDassert(head && *head); - HDassert(!((*head)->ctx.dxpl_id == H5P_DEFAULT || - (*head)->ctx.dxpl_id == H5P_DATASET_XFER_DEFAULT)); - - /* Cache the filter mask for later, marking it to set in DXPL when context popped */ - (*head)->ctx.dcr_filters = direct_filters; - (*head)->ctx.dcr_filters_set = TRUE; - - FUNC_LEAVE_NOAPI_VOID -} /* end H5CX_set_dcr_filters() */ - #ifdef H5_HAVE_PARALLEL /*------------------------------------------------------------------------- @@ -2755,7 +2476,6 @@ H5CX__pop_common(void) HDassert(head && *head); /* Check for cached DXPL properties to return to application */ - H5CX_SET_PROP(H5D_XFER_DIRECT_CHUNK_READ_FILTERS_NAME, dcr_filters) #ifdef H5_HAVE_PARALLEL H5CX_SET_PROP(H5D_MPIO_ACTUAL_CHUNK_OPT_MODE_NAME, mpio_actual_chunk_opt) H5CX_SET_PROP(H5D_MPIO_ACTUAL_IO_MODE_NAME, mpio_actual_io_mode) diff --git a/src/H5CXprivate.h b/src/H5CXprivate.h index 3566f11..44a4067 100644 --- a/src/H5CXprivate.h +++ b/src/H5CXprivate.h @@ -95,12 +95,6 @@ H5_DLL herr_t H5CX_get_err_detect(H5Z_EDC_t *err_detect); H5_DLL herr_t H5CX_get_filter_cb(H5Z_cb_t *filter_cb); H5_DLL herr_t H5CX_get_data_transform(H5Z_data_xform_t **data_transform); H5_DLL herr_t H5CX_get_vlen_alloc_info(H5T_vlen_alloc_info_t *vl_alloc_info); -H5_DLL herr_t H5CX_get_dcr_flag(hbool_t *direct_read); -H5_DLL herr_t H5CX_get_dcr_offset(hsize_t **direct_offset); -H5_DLL herr_t H5CX_get_dcw_flag(hbool_t *direct_write); -H5_DLL herr_t H5CX_get_dcw_filters(uint32_t *direct_filters); -H5_DLL herr_t H5CX_get_dcw_offset(hsize_t **direct_offset); -H5_DLL herr_t H5CX_get_dcw_datasize(uint32_t *direct_datasize); H5_DLL herr_t H5CX_get_dt_conv_cb(H5T_conv_cb_t *cb_struct); /* "Getter" routines for LAPL properties cached in API context */ @@ -127,7 +121,6 @@ H5_DLL herr_t H5CX_set_vlen_alloc_info(H5MM_allocate_t alloc_func, H5_DLL herr_t H5CX_set_nlinks(size_t nlinks); /* "Setter" routines for cached DXPL properties that must be returned to application */ -H5_DLL void H5CX_set_dcr_filters(uint32_t direct_filters); #ifdef H5_HAVE_PARALLEL H5_DLL void H5CX_set_mpio_actual_chunk_opt(H5D_mpio_actual_chunk_opt_mode_t chunk_opt); H5_DLL void H5CX_set_mpio_actual_io_mode(H5D_mpio_actual_io_mode_t actual_io_mode); diff --git a/src/H5Dio.c b/src/H5Dio.c index 1566b5e..452105e 100644 --- a/src/H5Dio.c +++ b/src/H5Dio.c @@ -50,7 +50,8 @@ /* Local Prototypes */ /********************/ -/* Setup/teardown routines */ +static herr_t H5D__get_offset_copy(const H5D_t *dset, const hsize_t *offset, + hsize_t *offset_copy/*out*/); static herr_t H5D__ioinfo_init(H5D_t *dset, const H5D_type_info_t *type_info, H5D_storage_t *store, H5D_io_info_t *io_info); static herr_t H5D__typeinfo_init(const H5D_t *dset, hid_t mem_type_id, @@ -80,32 +81,81 @@ H5FL_DEFINE(H5D_chunk_map_t); /*------------------------------------------------------------------------- + * Function: H5D__get_offset_copy + * + * Purpose: Gets a copy of the user's offset array that is guaraneteed + * to be suitable for use by the library. + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +static herr_t +H5D__get_offset_copy(const H5D_t *dset, const hsize_t *offset, hsize_t *offset_copy) +{ + unsigned u; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + HDassert(dset); + HDassert(offset); + HDassert(offset_copy); + + + /* The library's chunking code requires the offset to terminate with a zero. + * So transfer the offset array to an internal offset array that we + * can properly terminate (handled via the calloc call). + */ + + HDmemset(offset_copy, 0, H5O_LAYOUT_NDIMS * sizeof(hsize_t)); + + for (u = 0; u < dset->shared->ndims; u++) { + /* Make sure the offset doesn't exceed the dataset's dimensions */ + if (offset[u] > dset->shared->curr_dims[u]) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "offset exceeds dimensions of dataset") + + /* Make sure the offset fall right on a chunk's boundary */ + if (offset[u] % dset->shared->layout.u.chunk.dim[u]) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "offset doesn't fall on chunks's boundary") + + offset_copy[u] = offset[u]; + } + +done: + FUNC_LEAVE_NOAPI(ret_value) + +} /* end H5D__get_offset_copy() */ + + + +/*------------------------------------------------------------------------- * Function: H5Dread * - * Purpose: Reads (part of) a DSET from the file into application - * memory BUF. The part of the dataset to read is defined with - * MEM_SPACE_ID and FILE_SPACE_ID. The data points are - * converted from their file type to the MEM_TYPE_ID specified. - * Additional miscellaneous data transfer properties can be - * passed to this function with the PLIST_ID argument. + * Purpose: Reads (part of) a DSET from the file into application + * memory BUF. The part of the dataset to read is defined with + * MEM_SPACE_ID and FILE_SPACE_ID. The data points are + * converted from their file type to the MEM_TYPE_ID specified. + * Additional miscellaneous data transfer properties can be + * passed to this function with the PLIST_ID argument. * - * The FILE_SPACE_ID can be the constant H5S_ALL which indicates - * that the entire file dataspace is to be referenced. + * The FILE_SPACE_ID can be the constant H5S_ALL which indicates + * that the entire file dataspace is to be referenced. * - * The MEM_SPACE_ID can be the constant H5S_ALL in which case - * the memory dataspace is the same as the file dataspace - * defined when the dataset was created. + * The MEM_SPACE_ID can be the constant H5S_ALL in which case + * the memory dataspace is the same as the file dataspace + * defined when the dataset was created. * - * The number of elements in the memory dataspace must match - * the number of elements in the file dataspace. + * The number of elements in the memory dataspace must match + * the number of elements in the file dataspace. * - * The PLIST_ID can be the constant H5P_DEFAULT in which - * case the default data transfer properties are used. + * The PLIST_ID can be the constant H5P_DEFAULT in which + * case the default data transfer properties are used. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * Thursday, December 4, 1997 + * Programmer: Robb Matzke + * Thursday, December 4, 1997 * *------------------------------------------------------------------------- */ @@ -113,135 +163,136 @@ herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, void *buf/*out*/) { - H5D_t *dset = NULL; - const H5S_t *mem_space = NULL; - const H5S_t *file_space = NULL; - hbool_t direct_read = FALSE; - herr_t ret_value = SUCCEED; /* Return value */ + H5D_t *dset = NULL; + const H5S_t *mem_space = NULL; + const H5S_t *file_space = NULL; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE6("e", "iiiiix", dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf); - /* check arguments */ - if(NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset") - if(NULL == dset->oloc.file) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset") + /* Get dataset pointer */ + if (NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id is not a dataset ID") + if (NULL == dset->oloc.file) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dataset is not associated with a file") - if(mem_space_id < 0 || file_space_id < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + /* Get validated dataspace pointers */ + if (H5S_get_validated_dataspace(mem_space_id, &mem_space) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "could not get a validated dataspace from mem_space_id") + if (H5S_get_validated_dataspace(file_space_id, &file_space) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "could not get a validated dataspace from file_space_id") - if(H5S_ALL != mem_space_id) { - if(NULL == (mem_space = (const H5S_t *)H5I_object_verify(mem_space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + /* Get the default dataset transfer property list if the user didn't provide one */ + if (H5P_DEFAULT == dxpl_id) + dxpl_id = H5P_DATASET_XFER_DEFAULT; + else + if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER)) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not xfer parms") - /* Check for valid selection */ - if(H5S_SELECT_VALID(mem_space) != TRUE) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "selection+offset not within extent") - } /* end if */ + /* Set DXPL for operation */ + H5CX_set_dxpl(dxpl_id); - if(H5S_ALL != file_space_id) { - if(NULL == (file_space = (const H5S_t *)H5I_object_verify(file_space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + /* Read raw data */ + if (H5D__read(dset, mem_type_id, mem_space, file_space, buf/*out*/) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read data") - /* Check for valid selection */ - if(H5S_SELECT_VALID(file_space) != TRUE) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "selection+offset not within extent") - } /* end if */ +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Dread() */ + + +/*------------------------------------------------------------------------- + * Function: H5Dread_chunk + * + * Purpose: Reads an entire chunk from the file directly. + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Matthew Strong (GE Healthcare) + * 14 February 2016 + * + *--------------------------------------------------------------------------- + */ +herr_t +H5Dread_chunk(hid_t dset_id, hid_t dxpl_id, const hsize_t *offset, uint32_t *filters, + void *buf) +{ + H5D_t *dset = NULL; + hsize_t offset_copy[H5O_LAYOUT_NDIMS]; /* Internal copy of chunk offset */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE5("e", "ii*h*Iu*x", dset_id, dxpl_id, offset, filters, buf); + + /* Check arguments */ + if (NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id is not a dataset ID") + if (NULL == dset->oloc.file) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dataset is not associated with a file") + if (H5D_CHUNKED != dset->shared->layout.type) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a chunked dataset") + if (!buf) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "buf cannot be NULL") + if (!offset) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "offset cannot be NULL") + if (!filters) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "filters cannot be NULL") /* Get the default dataset transfer property list if the user didn't provide one */ - if(H5P_DEFAULT == dxpl_id) + if (H5P_DEFAULT == dxpl_id) dxpl_id = H5P_DATASET_XFER_DEFAULT; else - if(TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER)) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not xfer parms") + if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER)) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dxpl_id is not a dataset transfer property list ID") /* Set DXPL for operation */ H5CX_set_dxpl(dxpl_id); - /* Retrieve the 'direct read' flag */ - if(H5CX_get_dcr_flag(&direct_read) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error getting flag for direct chunk read") - - /* Set up for direct read of chunk, bypassing filters, etc. */ - if(direct_read) { - hsize_t *direct_offset; /* Chunk offset from calling routine */ - hsize_t internal_offset[H5O_LAYOUT_NDIMS]; /* Internal copy of chunk offset */ - uint32_t direct_filters = 0; /* Filters for chunk */ - unsigned u; /* Local index variable */ - - /* Sanity check */ - if(H5D_CHUNKED != dset->shared->layout.type) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a chunked dataset") - - /* Get the direct chunk offset */ - if(H5CX_get_dcr_offset(&direct_offset) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error getting offset for direct chunk read") - HDassert(direct_offset); - - /* The library's chunking code requires the offset terminates with a zero. So transfer the - * offset array to an internal offset array */ - for(u = 0; u < dset->shared->ndims; u++) { - /* Make sure the offset doesn't exceed the dataset's dimensions */ - if(direct_offset[u] > dset->shared->curr_dims[u]) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "offset exceeds dimensions of dataset") - - /* Make sure the offset fall right on a chunk's boundary */ - if(direct_offset[u] % dset->shared->layout.u.chunk.dim[u]) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "offset doesn't fall on chunks's boundary") - - internal_offset[u] = direct_offset[u]; - } /* end for */ - - /* Terminate the offset with a zero */ - internal_offset[dset->shared->ndims] = 0; - - /* Read the raw chunk */ - if(H5D__chunk_direct_read(dset, internal_offset, &direct_filters, buf) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read chunk directly") - - /* Set the chunk filter mask for application */ - H5CX_set_dcr_filters(direct_filters); - } /* end if */ - else - /* Read raw data */ - if(H5D__read(dset, mem_type_id, mem_space, file_space, buf/*out*/) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read data") + /* Copy the user's offset array so we can be sure it's terminated properly. + * (we don't want to mess with the user's buffer). + */ + if (H5D__get_offset_copy(dset, offset, offset_copy) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "failure to copy offset array") + + /* Read the raw chunk */ + if (H5D__chunk_direct_read(dset, offset_copy, filters, buf) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read unprocessed chunk data") done: FUNC_LEAVE_API(ret_value) -} /* end H5Dread() */ +} /* end H5Dread_chunk() */ /*------------------------------------------------------------------------- - * Function: H5Dwrite + * Function: H5Dwrite * - * Purpose: Writes (part of) a DSET from application memory BUF to the - * file. The part of the dataset to write is defined with the - * MEM_SPACE_ID and FILE_SPACE_ID arguments. The data points - * are converted from their current type (MEM_TYPE_ID) to their - * file datatype. Additional miscellaneous data transfer - * properties can be passed to this function with the - * PLIST_ID argument. + * Purpose: Writes (part of) a DSET from application memory BUF to the + * file. The part of the dataset to write is defined with the + * MEM_SPACE_ID and FILE_SPACE_ID arguments. The data points + * are converted from their current type (MEM_TYPE_ID) to their + * file datatype. Additional miscellaneous data transfer + * properties can be passed to this function with the + * PLIST_ID argument. * - * The FILE_SPACE_ID can be the constant H5S_ALL which indicates - * that the entire file dataspace is to be referenced. + * The FILE_SPACE_ID can be the constant H5S_ALL which indicates + * that the entire file dataspace is to be referenced. * - * The MEM_SPACE_ID can be the constant H5S_ALL in which case - * the memory dataspace is the same as the file dataspace - * defined when the dataset was created. + * The MEM_SPACE_ID can be the constant H5S_ALL in which case + * the memory dataspace is the same as the file dataspace + * defined when the dataset was created. * - * The number of elements in the memory dataspace must match - * the number of elements in the file dataspace. + * The number of elements in the memory dataspace must match + * the number of elements in the file dataspace. * - * The PLIST_ID can be the constant H5P_DEFAULT in which - * case the default data transfer properties are used. + * The PLIST_ID can be the constant H5P_DEFAULT in which + * case the default data transfer properties are used. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * Thursday, December 4, 1997 + * Programmer: Robb Matzke + * Thursday, December 4, 1997 * *------------------------------------------------------------------------- */ @@ -249,61 +300,40 @@ herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf) { - H5D_t *dset = NULL; + H5D_t *dset = NULL; const H5S_t *mem_space = NULL; const H5S_t *file_space = NULL; - hbool_t direct_write = FALSE; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE6("e", "iiiii*x", dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf); - /* check arguments */ - if(NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset") - if(NULL == dset->oloc.file) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") + /* Get dataset pointer and ensure it's associated with a file */ + if (NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id is not a dataset ID") + if (NULL == dset->oloc.file) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dataset is not associated with a file") + + /* Get validated dataspace pointers */ + if (H5S_get_validated_dataspace(mem_space_id, &mem_space) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "could not get a validated dataspace from mem_space_id") + if (H5S_get_validated_dataspace(file_space_id, &file_space) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "could not get a validated dataspace from file_space_id") /* Get the default dataset transfer property list if the user didn't provide one */ - if(H5P_DEFAULT == dxpl_id) + if (H5P_DEFAULT == dxpl_id) dxpl_id = H5P_DATASET_XFER_DEFAULT; else - if(TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER)) + if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not xfer parms") /* Set DXPL for operation */ H5CX_set_dxpl(dxpl_id); - /* Retrieve the 'direct write' flag */ - if(H5CX_get_dcw_flag(&direct_write) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error getting flag for direct chunk read") - - /* Check dataspace selections if this is not a direct write */ - if(!direct_write) { - if(mem_space_id < 0 || file_space_id < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") - - if(H5S_ALL != mem_space_id) { - if(NULL == (mem_space = (const H5S_t *)H5I_object_verify(mem_space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") - - /* Check for valid selection */ - if(H5S_SELECT_VALID(mem_space) != TRUE) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "memory selection+offset not within extent") - } /* end if */ - if(H5S_ALL != file_space_id) { - if(NULL == (file_space = (const H5S_t *)H5I_object_verify(file_space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") - - /* Check for valid selection */ - if(H5S_SELECT_VALID(file_space) != TRUE) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "file selection+offset not within extent") - } /* end if */ - } /* end if */ - - if(H5D__pre_write(dset, direct_write, mem_type_id, mem_space, file_space, buf) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't prepare for writing data") + /* Write the data */ + if (H5D__write(dset, mem_type_id, mem_space, file_space, buf) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data") done: FUNC_LEAVE_API(ret_value) @@ -311,70 +341,71 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__pre_write + * Function: H5Dwrite_chunk * - * Purpose: Preparation for writing data. + * Purpose: Writes an entire chunk to the file directly. * - * Return: SUCCEED/FAIL + * Return: Non-negative on success/Negative on failure + * + * Programmer: Raymond Lu + * 30 July 2012 * *------------------------------------------------------------------------- */ herr_t -H5D__pre_write(H5D_t *dset, hbool_t direct_write, hid_t mem_type_id, - const H5S_t *mem_space, const H5S_t *file_space, const void *buf) +H5Dwrite_chunk(hid_t dset_id, hid_t dxpl_id, uint32_t filters, const hsize_t *offset, + size_t data_size, const void *buf) { - herr_t ret_value = SUCCEED; /* Return value */ + H5D_t *dset = NULL; + hsize_t offset_copy[H5O_LAYOUT_NDIMS]; /* Internal copy of chunk offset */ + uint32_t data_size_32; /* Chunk data size (limited to 32-bits currently) */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE6("e", "iiIu*hz*x", dset_id, dxpl_id, filters, offset, data_size, buf); + + /* Check arguments */ + if (NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset ID") + if (NULL == dset->oloc.file) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dataset is not associated with a file") + if (H5D_CHUNKED != dset->shared->layout.type) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a chunked dataset") + if (!buf) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "buf cannot be NULL") + if (!offset) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "offset cannot be NULL") + if (0 == data_size) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "data_size cannot be zero") + + /* Make sure data size is less than 4 GiB */ + data_size_32 = (uint32_t)data_size; + if (data_size != (size_t)data_size_32) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid data_size - chunks cannot be > 4 GiB") - FUNC_ENTER_PACKAGE_VOL - - /* Direct chunk write */ - if(direct_write) { - uint32_t direct_filters; - hsize_t *direct_offset; - uint32_t direct_datasize; - hsize_t internal_offset[H5O_LAYOUT_NDIMS]; - unsigned u; /* Local index variable */ - - if(H5D_CHUNKED != dset->shared->layout.type) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a chunked dataset") - - /* Retrieve parameters for direct chunk write */ - if(H5CX_get_dcw_filters(&direct_filters) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error getting filter info for direct chunk write") - if(H5CX_get_dcw_offset(&direct_offset) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error getting offset info for direct chunk write") - if(H5CX_get_dcw_datasize(&direct_datasize) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error getting data size for direct chunk write") - - /* The library's chunking code requires the offset terminates with a zero. So transfer the - * offset array to an internal offset array */ - for(u = 0; u < dset->shared->ndims; u++) { - /* Make sure the offset doesn't exceed the dataset's dimensions */ - if(direct_offset[u] > dset->shared->curr_dims[u]) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "offset exceeds dimensions of dataset") - - /* Make sure the offset fall right on a chunk's boundary */ - if(direct_offset[u] % dset->shared->layout.u.chunk.dim[u]) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "offset doesn't fall on chunks's boundary") - - internal_offset[u] = direct_offset[u]; - } /* end for */ - - /* Terminate the offset with a zero */ - internal_offset[dset->shared->ndims] = 0; - - /* write raw data */ - if(H5D__chunk_direct_write(dset, direct_filters, internal_offset, direct_datasize, buf) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write chunk directly") - } /* end if */ + /* Get the default dataset transfer property list if the user didn't provide one */ + if (H5P_DEFAULT == dxpl_id) + dxpl_id = H5P_DATASET_XFER_DEFAULT; else - /* Normal write of raw data */ - if(H5D__write(dset, mem_type_id, mem_space, file_space, buf) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data") + if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER)) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dxpl_id is not a dataset transfer property list ID") + + /* Set DXPL for operation */ + H5CX_set_dxpl(dxpl_id); + + /* Copy the user's offset array so we can be sure it's terminated properly. + * (we don't want to mess with the user's buffer). + */ + if (H5D__get_offset_copy(dset, offset, offset_copy) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "failure to copy offset array") + + /* Write chunk */ + if (H5D__chunk_direct_write(dset, filters, offset_copy, data_size_32, buf) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write unprocessed chunk data") done: - FUNC_LEAVE_NOAPI_VOL(ret_value) -} /* end H5D__pre_write() */ + FUNC_LEAVE_API(ret_value) +} /* end H5Dwrite_chunk() */ /*------------------------------------------------------------------------- @@ -400,7 +431,7 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, hbool_t type_info_init = FALSE; /* Whether the datatype info has been initialized */ H5S_t * projected_mem_space = NULL; /* If not NULL, ptr to dataspace containing a */ /* projection of the supplied mem_space to a new */ - /* dataspace with rank equal to that of */ + /* dataspace with rank equal to that of */ /* file_space. */ /* */ /* This field is only used if */ @@ -428,7 +459,7 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, if(!mem_space) mem_space = file_space; if((snelmts = H5S_GET_SELECT_NPOINTS(mem_space)) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dst dataspace has invalid selection") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dst dataspace has invalid selection") H5_CHECKED_ASSIGN(nelmts, hsize_t, snelmts, hssize_t); /* Set up datatype info for operation */ @@ -612,7 +643,7 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, hbool_t type_info_init = FALSE; /* Whether the datatype info has been initialized */ H5S_t * projected_mem_space = NULL; /* If not NULL, ptr to dataspace containing a */ /* projection of the supplied mem_space to a new */ - /* dataspace with rank equal to that of */ + /* dataspace with rank equal to that of */ /* file_space. */ /* */ /* This field is only used if */ @@ -645,7 +676,7 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, /* Check if we are allowed to write to this file */ if(0 == (H5F_INTENT(dataset->oloc.file) & H5F_ACC_RDWR)) - HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "no write intent on file") + HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "no write intent on file") /* Set up datatype info for operation */ if(H5D__typeinfo_init(dataset, mem_type_id, TRUE, &type_info) < 0) @@ -691,12 +722,12 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, mem_space = file_space; if((snelmts = H5S_GET_SELECT_NPOINTS(mem_space)) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "src dataspace has invalid selection") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "src dataspace has invalid selection") H5_CHECKED_ASSIGN(nelmts, hsize_t, snelmts, hssize_t); /* Make certain that the number of elements in each selection is the same */ if(nelmts != (hsize_t)H5S_GET_SELECT_NPOINTS(file_space)) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "src and dest dataspaces have different number of elements selected") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "src and dest dataspaces have different number of elements selected") /* Check for a NULL buffer, after the H5S_ALL dataspace selection has been handled */ if(NULL == buf) { @@ -934,7 +965,7 @@ H5D__typeinfo_init(const H5D_t *dset, hid_t mem_type_id, hbool_t do_write, /* Get the memory & dataset datatypes */ if(NULL == (type_info->mem_type = (const H5T_t *)H5I_object_verify(mem_type_id, H5I_DATATYPE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a datatype") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a datatype") type_info->dset_type = dset->shared->type; if(do_write) { @@ -959,11 +990,11 @@ H5D__typeinfo_init(const H5D_t *dset, hid_t mem_type_id, hbool_t do_write, * turns off background preservation. */ if(NULL == (type_info->tpath = H5T_path_find(src_type, dst_type))) - HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest datatype") + HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest datatype") /* Retrieve info from API context */ if(H5CX_get_data_transform(&data_transform) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get data transform info") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get data transform info") /* Precompute some useful information */ type_info->src_type_size = H5T_get_size(src_type); diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index 126a3c0..b887b87 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -583,8 +583,6 @@ H5_DLL herr_t H5D__refresh(hid_t dset_id, H5D_t *dataset); H5_DLL herr_t H5D__format_convert(H5D_t *dataset); /* Internal I/O routines */ -H5_DLL herr_t H5D__pre_write(H5D_t *dset, hbool_t direct_write, hid_t mem_type_id, - const H5S_t *mem_space, const H5S_t *file_space, const void *buf); H5_DLL herr_t H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, const H5S_t *file_space, void *buf/*out*/); H5_DLL herr_t H5D__write(H5D_t *dataset, hid_t mem_type_id, diff --git a/src/H5Dpublic.h b/src/H5Dpublic.h index 790674a..a1ccda0 100644 --- a/src/H5Dpublic.h +++ b/src/H5Dpublic.h @@ -35,17 +35,6 @@ /* Bit flags for the H5Pset_chunk_opts() and H5Pget_chunk_opts() */ #define H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS (0x0002u) -/* Property names for H5DOwrite_chunk */ -#define H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME "direct_chunk_flag" -#define H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME "direct_chunk_filters" -#define H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME "direct_chunk_offset" -#define H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME "direct_chunk_datasize" - -/* Property names for H5DOread_chunk */ -#define H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME "direct_chunk_read_flag" -#define H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME "direct_chunk_read_offset" -#define H5D_XFER_DIRECT_CHUNK_READ_FILTERS_NAME "direct_chunk_read_filters" - /*******************/ /* Public Typedefs */ /*******************/ @@ -157,6 +146,10 @@ H5_DLL herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, void *buf/*out*/); H5_DLL herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, const void *buf); +H5_DLL herr_t H5Dwrite_chunk(hid_t dset_id, hid_t dxpl_id, uint32_t filters, + const hsize_t *offset, size_t data_size, const void *buf); +H5_DLL herr_t H5Dread_chunk(hid_t dset_id, hid_t dxpl_id, + const hsize_t *offset, uint32_t *filters, void *buf); H5_DLL herr_t H5Diterate(void *buf, hid_t type_id, hid_t space_id, H5D_operator_t op, void *operator_data); H5_DLL herr_t H5Dvlen_reclaim(hid_t type_id, hid_t space_id, hid_t plist_id, void *buf); @@ -185,7 +178,19 @@ H5_DLL herr_t H5Dget_chunk_index_type(hid_t did, H5D_chunk_index_t *idx_type); /* Macros */ #define H5D_CHUNK_BTREE H5D_CHUNK_IDX_BTREE - +/* Formerly used to support the H5DOread/write_chunk() API calls. + * These symbols are no longer used in the library. + */ +/* Property names for H5DOwrite_chunk */ +#define H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME "direct_chunk_flag" +#define H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME "direct_chunk_filters" +#define H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME "direct_chunk_offset" +#define H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME "direct_chunk_datasize" +/* Property names for H5DOread_chunk */ +#define H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME "direct_chunk_read_flag" +#define H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME "direct_chunk_read_offset" +#define H5D_XFER_DIRECT_CHUNK_READ_FILTERS_NAME "direct_chunk_read_filters" + /* Typedefs */ @@ -700,7 +700,7 @@ H5Freopen(hid_t file_id) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") /* Get a new "top level" file struct, sharing the same "low level" file struct */ - if(NULL == (new_file = H5F_new(old_file->shared, 0, H5P_FILE_CREATE_DEFAULT, H5P_FILE_ACCESS_DEFAULT, NULL))) + if(NULL == (new_file = H5F__new(old_file->shared, 0, H5P_FILE_CREATE_DEFAULT, H5P_FILE_ACCESS_DEFAULT, NULL))) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to reopen file") /* Duplicate old file's names */ @@ -1195,14 +1195,14 @@ H5FS_get_sect_count(const H5FS_t *frsp, hsize_t *tot_sect_count) * * Purpose: Verify that the free space manager is mostly sane * - * Return: SUCCEED (Can't fail) + * Return: void * * Programmer: Quincey Koziol * Jul 17 2006 * *------------------------------------------------------------------------- */ -herr_t +void H5FS__assert(const H5FS_t *fspace) { FUNC_ENTER_PACKAGE_NOERR @@ -1228,7 +1228,7 @@ HDfprintf(stderr, "%s: fspace->tot_sect_count = %Hu\n", "H5FS__assert", fspace-> HDassert(fspace->serial_sect_count > 0 || fspace->ghost_sect_count == 0); #endif /* QAK */ - FUNC_LEAVE_NOAPI(SUCCEED) + FUNC_LEAVE_NOAPI_VOID } /* end H5FS__assert() */ #endif /* H5FS_DEBUG_ASSERT */ diff --git a/src/H5FSpkg.h b/src/H5FSpkg.h index 23e1212..a5896ee 100644 --- a/src/H5FSpkg.h +++ b/src/H5FSpkg.h @@ -235,10 +235,10 @@ H5_DLL herr_t H5FS__hdr_dest(H5FS_t *hdr); H5_DLL herr_t H5FS_sinfo_dest(H5FS_sinfo_t *sinfo); /* Sanity check routines */ -#ifdef H5FS_DEBUG -H5_DLL herr_t H5FS__assert(const H5FS_t *fspace); -H5_DLL herr_t H5FS__sect_assert(const H5FS_t *fspace); -#endif /* H5FS_DEBUG */ +#ifdef H5FS_DEBUG_ASSERT +H5_DLL void H5FS__assert(const H5FS_t *fspace); +H5_DLL void H5FS__sect_assert(const H5FS_t *fspace); +#endif /* H5FS_DEBUG_ASSERT */ /* Testing routines */ #ifdef H5FS_TESTING diff --git a/src/H5FSsection.c b/src/H5FSsection.c index f0d9f47..11cd722 100644 --- a/src/H5FSsection.c +++ b/src/H5FSsection.c @@ -2197,14 +2197,14 @@ done: * * Purpose: Verify that the sections managed are mostly sane * - * Return: SUCCEED/FAIL + * Return: void * * Programmer: Quincey Koziol * Jul 17 2006 * *------------------------------------------------------------------------- */ -herr_t +void H5FS__sect_assert(const H5FS_t *fspace) { hsize_t separate_obj; /* The number of separate objects managed */ @@ -2256,7 +2256,7 @@ HDfprintf(stderr, "%s: fspace->tot_sect_count = %Hu\n", "H5FS__sect_assert", fsp size_t size_ghost_count; /* # of ghost sections of this size */ /* Get section size node */ - fspace_node = H5SL_item(curr_size_node); + fspace_node = (H5FS_node_t *)H5SL_item(curr_size_node); /* Check sections on list */ curr_sect_node = H5SL_first(fspace_node->sect_list); @@ -2267,7 +2267,7 @@ HDfprintf(stderr, "%s: fspace->tot_sect_count = %Hu\n", "H5FS__sect_assert", fsp H5FS_section_info_t *sect; /* Section */ /* Get section node & it's class */ - sect = H5SL_item(curr_sect_node); + sect = (H5FS_section_info_t *)H5SL_item(curr_sect_node); cls = &fspace->sect_cls[sect->type]; #ifdef QAK HDfprintf(stderr, "%s: sect->size = %Hu, sect->addr = %a, sect->type = %u\n", "H5FS__sect_assert", sect->size, sect->addr, sect->type); @@ -2337,7 +2337,7 @@ HDfprintf(stderr, "%s: sect->size = %Hu, sect->addr = %a, sect->type = %u\n", "H if(fspace->sinfo->merge_list) HDassert(fspace->tot_sect_count == (separate_obj + H5SL_count(fspace->sinfo->merge_list))); - FUNC_LEAVE_NOAPI(SUCCEED) + FUNC_LEAVE_NOAPI_VOID } /* end H5FS__sect_assert() */ #endif /* H5FS_DEBUG_ASSERT */ diff --git a/src/H5Fefc.c b/src/H5Fefc.c index 487ed2f..07bb644 100644 --- a/src/H5Fefc.c +++ b/src/H5Fefc.c @@ -73,7 +73,7 @@ H5FL_DEFINE_STATIC(H5F_efc_t); /*------------------------------------------------------------------------- - * Function: H5F_efc_create + * Function: H5F__efc_create * * Purpose: Allocate and initialize a new external file cache object, * which can the be used to cache open external files. @@ -88,12 +88,12 @@ H5FL_DEFINE_STATIC(H5F_efc_t); *------------------------------------------------------------------------- */ H5F_efc_t * -H5F_efc_create(unsigned max_nfiles) +H5F__efc_create(unsigned max_nfiles) { H5F_efc_t *efc = NULL; /* EFC object */ H5F_efc_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_NOAPI(NULL) + FUNC_ENTER_PACKAGE /* Sanity checks */ HDassert(max_nfiles > 0); @@ -116,7 +116,7 @@ done: efc = H5FL_FREE(H5F_efc_t, efc); FUNC_LEAVE_NOAPI(ret_value) -} /* end H5F_efc_create() */ +} /* end H5F__efc_create() */ /*------------------------------------------------------------------------- @@ -139,8 +139,7 @@ done: *------------------------------------------------------------------------- */ H5F_t * -H5F__efc_open(H5F_t *parent, const char *name, unsigned flags, hid_t fcpl_id, - hid_t fapl_id) +H5F__efc_open(H5F_t *parent, const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id) { H5F_efc_t *efc = NULL; /* External file cache for parent file */ H5F_efc_ent_t *ent = NULL; /* Entry for target file in efc */ @@ -376,7 +375,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5F_efc_max_nfiles + * Function: H5F__efc_max_nfiles * * Purpose: Returns the maximum number of files in the provided * external file cache. @@ -389,15 +388,15 @@ done: *------------------------------------------------------------------------- */ unsigned -H5F_efc_max_nfiles(H5F_efc_t *efc) +H5F__efc_max_nfiles(H5F_efc_t *efc) { - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_PACKAGE_NOERR HDassert(efc); HDassert(efc->max_nfiles > 0); FUNC_LEAVE_NOAPI(efc->max_nfiles) -} /* end H5F_efc_max_nfiles */ +} /* end H5F__efc_max_nfiles */ /*------------------------------------------------------------------------- @@ -793,7 +792,7 @@ H5F__efc_try_close_tag2(H5F_file_t *sf, H5F_file_t **tail) * uncloseable file would be closed. * * The final pass exploits the H5F__efc_release_real()-> - * H5F_efc_remove_ent()->H5F_try_close()->H5F__efc_try_close() + * H5F__efc_remove_ent()->H5F_try_close()->H5F__efc_try_close() * calling chain to recursively close the tree, but only the * files that are still marked as closeable. All files * marked as closeable have their EFCs released, and will @@ -819,7 +818,7 @@ H5F__efc_try_close(H5F_t *f) H5F_file_t *next; /* Temporary file pointer */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_PACKAGE /* Sanity checks */ HDassert(f); @@ -852,7 +851,7 @@ H5F__efc_try_close(H5F_t *f) /* If there are references that are not from an EFC or f, it will never * be possible to close the file. Just return. Note that this holds true * for the case that this file is being closed through H5F__efc_release_real() - * because that function (through H5F_efc_remove_ent()) decrements the EFC + * because that function (through H5F__efc_remove_ent()) decrements the EFC * reference count before it calls H5F_try_close(). This may occur if this * function is reentered. */ /* If the tag is H5F_EFC_TAG_DONTCLOSE, then we have definitely reentered diff --git a/src/H5Fint.c b/src/H5Fint.c index 49538f4..abc638a 100644 --- a/src/H5Fint.c +++ b/src/H5Fint.c @@ -21,22 +21,22 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Aprivate.h" /* Attributes */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5CXprivate.h" /* API Contexts */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fpkg.h" /* File access */ -#include "H5FDprivate.h" /* File drivers */ -#include "H5Gprivate.h" /* Groups */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Lprivate.h" /* Links */ -#include "H5MFprivate.h" /* File memory management */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5Pprivate.h" /* Property lists */ -#include "H5SMprivate.h" /* Shared Object Header Messages */ -#include "H5Tprivate.h" /* Datatypes */ +#include "H5private.h" /* Generic Functions */ +#include "H5Aprivate.h" /* Attributes */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5CXprivate.h" /* API Contexts */ +#include "H5Dprivate.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* File access */ +#include "H5FDprivate.h" /* File drivers */ +#include "H5Gprivate.h" /* Groups */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Lprivate.h" /* Links */ +#include "H5MFprivate.h" /* File memory management */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Pprivate.h" /* Property lists */ +#include "H5SMprivate.h" /* Shared Object Header Messages */ +#include "H5Tprivate.h" /* Datatypes */ /****************/ @@ -74,11 +74,9 @@ typedef struct H5F_olist_t { /********************/ static int H5F_get_objects_cb(void *obj_ptr, hid_t obj_id, void *key); -static herr_t H5F__build_name(const char *prefix, const char *file_name, - char **full_name/*out*/); +static herr_t H5F__build_name(const char *prefix, const char *file_name, char **full_name/*out*/); static char *H5F__getenv_prefix_name(char **env_prefix/*in,out*/); -static herr_t H5F_build_actual_name(const H5F_t *f, const H5P_genplist_t *fapl, - const char *name, char ** /*out*/ actual_name);/* Declare a free list to manage the H5F_t struct */ +static herr_t H5F_build_actual_name(const H5F_t *f, const H5P_genplist_t *fapl, const char *name, char ** /*out*/ actual_name); static herr_t H5F__flush_phase1(H5F_t *f); static herr_t H5F__flush_phase2(H5F_t *f, hbool_t closing); @@ -175,7 +173,7 @@ H5F_get_access_plist(H5F_t *f, hbool_t app_ref) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set object flush callback") if(f->shared->efc) - efc_size = H5F_efc_max_nfiles(f->shared->efc); + efc_size = H5F__efc_max_nfiles(f->shared->efc); if(H5P_set(new_plist, H5F_ACS_EFC_SIZE_NAME, &efc_size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't set elink file cache size") if(f->shared->page_buf != NULL) { @@ -486,11 +484,12 @@ done: /*-------------------------------------------------------------------------- - * Function: H5F__build_name + * Function: H5F__build_name * - * Purpose: Prepend PREFIX to FILE_NAME and store in FULL_NAME + * Purpose: Prepend PREFIX to FILE_NAME and store in FULL_NAME + * + * Return: SUCCEED/FAIL * - * Return: Non-negative on success/Negative on failure *--------------------------------------------------------------------------*/ static herr_t H5F__build_name(const char *prefix, const char *file_name, char **full_name/*out*/) @@ -510,7 +509,7 @@ H5F__build_name(const char *prefix, const char *file_name, char **full_name/*out /* Compose the full file name */ HDsnprintf(*full_name, (prefix_len + fname_len + 2), "%s%s%s", prefix, - (H5_CHECK_DELIMITER(prefix[prefix_len - 1]) ? "" : H5_DIR_SEPS), file_name); + ((prefix_len == 0 || H5_CHECK_DELIMITER(prefix[prefix_len - 1])) ? "" : H5_DIR_SEPS), file_name); done: FUNC_LEAVE_NOAPI(ret_value) @@ -818,34 +817,37 @@ done: /*------------------------------------------------------------------------- - * Function: H5F_new + * Function: H5F__new * - * Purpose: Creates a new file object and initializes it. The - * H5Fopen and H5Fcreate functions then fill in various fields. - * If SHARED is a non-null pointer then the shared info - * to which it points has the reference count incremented. - * Otherwise a new, empty shared info struct is created and - * initialized with the specified file access property list. + * Purpose: Creates a new file object and initializes it. The + * H5Fopen and H5Fcreate functions then fill in various fields. + * If SHARED is a non-null pointer then the shared info + * to which it points has the reference count incremented. + * Otherwise a new, empty shared info struct is created and + * initialized with the specified file access property list. + * + * Return: Success: Pointer to a new file struct + * + * Failure: NULL * - * Return: Success: Ptr to a new file struct. - * Failure: NULL *------------------------------------------------------------------------- */ H5F_t * -H5F_new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t *lf) +H5F__new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t *lf) { - H5F_t *f = NULL, *ret_value = NULL; + H5F_t *f = NULL; + H5F_t *ret_value = NULL; - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_PACKAGE if(NULL == (f = H5FL_CALLOC(H5F_t))) HGOTO_ERROR(H5E_FILE, H5E_NOSPACE, NULL, "can't allocate top file structure") - f->file_id = -1; + f->file_id = H5I_INVALID_HID; if(shared) { HDassert(lf == NULL); f->shared = shared; - } /* end if */ + } else { H5P_genplist_t *plist; /* Property list */ unsigned efc_size; /* External file cache size */ @@ -866,7 +868,7 @@ H5F_new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t f->shared->fs_state[u] = H5F_FS_STATE_CLOSED; f->shared->fs_addr[u] = HADDR_UNDEF; f->shared->fs_man[u] = NULL; - } /* end for */ + } f->shared->first_alloc_dealloc = FALSE; f->shared->eoa_pre_fsm_fsalloc = HADDR_UNDEF; f->shared->eoa_post_fsm_fsalloc = HADDR_UNDEF; @@ -878,9 +880,8 @@ H5F_new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t /* intialize point of no return */ f->shared->point_of_no_return = FALSE; - /* - * Copy the file creation and file access property lists into the - * new file handle. We do this early because some values might need + /* Copy the file creation and file access property lists into the + * new file handle. We do this early because some values might need * to change as the file is being opened. */ if(NULL == (plist = (H5P_genplist_t *)H5I_object(fcpl_id))) @@ -906,7 +907,8 @@ H5F_new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t HDassert(f->shared->fs_page_size >= H5F_FILE_SPACE_PAGE_SIZE_MIN); /* Temporary for multi/split drivers: fail file creation - when persisting free-space or using paged aggregation strategy */ + * when persisting free-space or using paged aggregation strategy. + */ if(H5F_HAS_FEATURE(f, H5FD_FEAT_PAGED_AGGR)) if(f->shared->fs_strategy == H5F_FSPACE_STRATEGY_PAGE || f->shared->fs_persist) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't open with this strategy or persistent fs") @@ -947,7 +949,7 @@ H5F_new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t if(H5P_get(plist, H5F_ACS_EFC_SIZE_NAME, &efc_size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get elink file cache size") if(efc_size > 0) - if(NULL == (f->shared->efc = H5F_efc_create(efc_size))) + if(NULL == (f->shared->efc = H5F__efc_create(efc_size))) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "can't create external file cache") #ifdef H5_HAVE_PARALLEL if(H5P_get(plist, H5_COLL_MD_READ_FLAG_NAME, &(f->coll_md_read)) < 0) @@ -1000,12 +1002,12 @@ H5F_new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t f->shared->feature_flags &= ~(unsigned)H5FD_FEAT_ACCUMULATE_METADATA; if(H5FD_set_feature_flags(f->shared->lf, f->shared->feature_flags) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, NULL, "can't set feature_flags in VFD") - } /* end if */ + } else { /* If no value for read attempts has been set, use the default */ if(!f->shared->read_attempts) f->shared->read_attempts = H5F_METADATA_READ_ATTEMPTS; - } /* end else */ + } /* Determine the # of bins for metdata read retries */ if(H5F_set_retries(f) < 0) @@ -1031,8 +1033,7 @@ H5F_new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t if(H5P_get(plist, H5F_ACS_OBJECT_FLUSH_CB_NAME, &(f->shared->object_flush)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "can't get object flush cb info") - /* - * Create a metadata cache with the specified number of elements. + /* Create a metadata cache with the specified number of elements. * The cache might be created with a different number of elements and * the access property list should be updated to reflect that. */ @@ -1069,12 +1070,12 @@ done: HDONE_ERROR(H5E_FILE, H5E_CANTDEC, NULL, "can't close property list") f->shared = H5FL_FREE(H5F_file_t, f->shared); - } /* end if */ + } f = H5FL_FREE(H5F_t, f); - } /* end if */ + } FUNC_LEAVE_NOAPI(ret_value) -} /* end H5F_new() */ +} /* end H5F__new() */ /*------------------------------------------------------------------------- @@ -1343,8 +1344,8 @@ H5F__dest(H5F_t *f, hbool_t flush) * Return: Success: Non-NULL, pointer to new file object. * Failure: NULL * - * Programmer: Quincey Koziol - * December 13, 2017 + * Programmer: Quincey Koziol + * December 13, 2017 * *------------------------------------------------------------------------- */ @@ -1379,8 +1380,8 @@ done: * Return: Success: Non-NULL, pointer to new file object. * Failure: NULL * - * Programmer: Quincey Koziol - * December 13, 2017 + * Programmer: Quincey Koziol + * December 13, 2017 * *------------------------------------------------------------------------- */ @@ -1587,7 +1588,7 @@ H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "SWMR read access flag not the same for file that is already open") /* Allocate new "high-level" file struct */ - if((file = H5F_new(shared, flags, fcpl_id, fapl_id, NULL)) == NULL) + if((file = H5F__new(shared, flags, fcpl_id, fapl_id, NULL)) == NULL) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to create new file object") } /* end if */ else { @@ -1615,7 +1616,7 @@ H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id) } /* end if */ /* Create the 'top' file structure */ - if(NULL == (file = H5F_new(NULL, flags, fcpl_id, fapl_id, lf))) { + if(NULL == (file = H5F__new(NULL, flags, fcpl_id, fapl_id, lf))) { /* If this is the only time the file has been opened and the struct * returned is NULL, H5FD_close() will never be called via H5F_dest() * so we have to close lf here before heading to the error handling. @@ -1881,8 +1882,8 @@ H5F__flush_phase2(H5F_t *f, hbool_t closing) #ifdef H5_HAVE_PARALLEL if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) - /* Since we just returned from a call to H5AC_flush(), we just - * passed through a barrier. Hence we can skip the barrier on + /* Since we just returned from a call to H5AC_flush(), we just + * passed through a barrier. Hence we can skip the barrier on * entry to the mpio file driver truncate call below, and the first * barrier in the following call to flush the cache again. */ @@ -1967,8 +1968,8 @@ H5F__flush_real(H5F_t *f) * * Return: Non-negative on success / Negative on failure * - * Programmer: Quincey Koziol - * December 13, 2017 + * Programmer: Quincey Koziol + * December 13, 2017 * *------------------------------------------------------------------------- */ @@ -2085,7 +2086,7 @@ H5F__close_cb(H5F_t *f) unsigned nopen_objs = 0; /* Number of open objects in file/mount hierarchy */ /* Get the number of open objects and open files on this file/mount hierarchy */ - if(H5F_mount_count_ids(f, &nopen_files, &nopen_objs) < 0) + if(H5F__mount_count_ids(f, &nopen_files, &nopen_objs) < 0) HGOTO_ERROR(H5E_SYM, H5E_MOUNT, FAIL, "problem checking mount hierarchy") /* If there are no other file IDs open on this file/mount hier., but @@ -2150,7 +2151,7 @@ H5F_try_close(H5F_t *f, hbool_t *was_closed /*out*/) } /* end if */ /* Get the number of open objects and open files on this file/mount hierarchy */ - if(H5F_mount_count_ids(f, &nopen_files, &nopen_objs) < 0) + if(H5F__mount_count_ids(f, &nopen_files, &nopen_objs) < 0) HGOTO_ERROR(H5E_SYM, H5E_MOUNT, FAIL, "problem checking mount hierarchy") /* @@ -2792,19 +2793,19 @@ H5F__set_libver_bounds(H5F_t *f, H5F_libver_t low, H5F_libver_t high) * metadata entry class changes when the file format low / high * bounds are changed and an unwritten entry of that class is * sitting in the metadata cache. - * + * * If that happens, it's possible that the entry's size could * become larger, potentially corrupting the file (if the larger * entry is fully written, overwriting data outside its allocated * space), or corrupting the entry (if the entry is truncated to * fit into the allocated space). - * + * * Although I'm not aware of any metadata with this behavior * currently, it would be very difficult to guard against and / or * detect, but if we flush everything here, the format version * for metadata entries in the cache will be finalized and these * sorts of problems can be avoided. - * + * * QAK - April, 2018 */ if(H5F__flush_real(f) < 0) @@ -3635,7 +3636,7 @@ done: herr_t H5F__format_convert(H5F_t *f) { - hbool_t mark_dirty = FALSE; /* Whether to mark the file's superblock dirty */ + hbool_t mark_dirty = FALSE; /* Whether to mark the file's superblock dirty */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE_VOL @@ -3646,39 +3647,39 @@ H5F__format_convert(H5F_t *f) /* Check if the superblock should be downgraded */ if(f->shared->sblock->super_vers > HDF5_SUPERBLOCK_VERSION_V18_LATEST) { - f->shared->sblock->super_vers = HDF5_SUPERBLOCK_VERSION_V18_LATEST; - mark_dirty = TRUE; + f->shared->sblock->super_vers = HDF5_SUPERBLOCK_VERSION_V18_LATEST; + mark_dirty = TRUE; } /* end if */ /* Check for persistent freespace manager, which needs to be downgraded */ if(!(f->shared->fs_strategy == H5F_FILE_SPACE_STRATEGY_DEF && - f->shared->fs_persist == H5F_FREE_SPACE_PERSIST_DEF && - f->shared->fs_threshold == H5F_FREE_SPACE_THRESHOLD_DEF && - f->shared->fs_page_size == H5F_FILE_SPACE_PAGE_SIZE_DEF)) { - /* Check to remove free-space manager info message from superblock extension */ - if(H5F_addr_defined(f->shared->sblock->ext_addr)) - if(H5F__super_ext_remove_msg(f, H5O_FSINFO_ID) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTRELEASE, FAIL, "error in removing message from superblock extension") - - /* Close freespace manager */ - if(H5MF_try_close(f) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTRELEASE, FAIL, "unable to free free-space address") - - /* Set non-persistent freespace manager */ - f->shared->fs_strategy = H5F_FILE_SPACE_STRATEGY_DEF; - f->shared->fs_persist = H5F_FREE_SPACE_PERSIST_DEF; - f->shared->fs_threshold = H5F_FREE_SPACE_THRESHOLD_DEF; - f->shared->fs_page_size = H5F_FILE_SPACE_PAGE_SIZE_DEF; - - /* Indicate that the superblock should be marked dirty */ - mark_dirty = TRUE; + f->shared->fs_persist == H5F_FREE_SPACE_PERSIST_DEF && + f->shared->fs_threshold == H5F_FREE_SPACE_THRESHOLD_DEF && + f->shared->fs_page_size == H5F_FILE_SPACE_PAGE_SIZE_DEF)) { + /* Check to remove free-space manager info message from superblock extension */ + if(H5F_addr_defined(f->shared->sblock->ext_addr)) + if(H5F__super_ext_remove_msg(f, H5O_FSINFO_ID) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTRELEASE, FAIL, "error in removing message from superblock extension") + + /* Close freespace manager */ + if(H5MF_try_close(f) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTRELEASE, FAIL, "unable to free free-space address") + + /* Set non-persistent freespace manager */ + f->shared->fs_strategy = H5F_FILE_SPACE_STRATEGY_DEF; + f->shared->fs_persist = H5F_FREE_SPACE_PERSIST_DEF; + f->shared->fs_threshold = H5F_FREE_SPACE_THRESHOLD_DEF; + f->shared->fs_page_size = H5F_FILE_SPACE_PAGE_SIZE_DEF; + + /* Indicate that the superblock should be marked dirty */ + mark_dirty = TRUE; } /* end if */ /* Check if we should mark the superblock dirty */ if(mark_dirty) - /* Mark superblock as dirty */ - if(H5F_super_dirty(f) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTMARKDIRTY, FAIL, "unable to mark superblock as dirty") + /* Mark superblock as dirty */ + if(H5F_super_dirty(f) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTMARKDIRTY, FAIL, "unable to mark superblock as dirty") done: FUNC_LEAVE_NOAPI_VOL(ret_value) diff --git a/src/H5Fmount.c b/src/H5Fmount.c index e3a92fd..4cd1edf 100644 --- a/src/H5Fmount.c +++ b/src/H5Fmount.c @@ -15,21 +15,18 @@ /* Packages needed by this file... */ -#include "H5private.h" /* Generic Functions */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fpkg.h" /* File access */ -#include "H5Gprivate.h" /* Groups */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Pprivate.h" /* Property lists */ -#include "H5MMprivate.h" /* Memory management */ +#include "H5private.h" /* Generic Functions */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5CXprivate.h" /* API Contexts */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* File access */ +#include "H5Gprivate.h" /* Groups */ +#include "H5Iprivate.h" /* IDs */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Pprivate.h" /* Property lists */ /* PRIVATE PROTOTYPES */ -static herr_t H5F__mount(H5G_loc_t *loc, const char *name, H5F_t *child, - hid_t plist_id); -static herr_t H5F__unmount(H5G_loc_t *loc, const char *name); -static void H5F_mount_count_ids_recurse(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs); +static void H5F__mount_count_ids_recurse(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs); /*------------------------------------------------------------------------- @@ -47,16 +44,17 @@ static void H5F_mount_count_ids_recurse(H5F_t *f, unsigned *nopen_files, unsigne herr_t H5F__close_mounts(H5F_t *f) { - unsigned u; /* Local index */ - herr_t ret_value=SUCCEED; /* Return value */ + unsigned u; /* Local index */ + herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI(FAIL) + FUNC_ENTER_PACKAGE HDassert(f); /* Unmount all child files. Loop backwards to avoid having to adjust u when * a file is unmounted. Note that we rely on unsigned u "wrapping around" - * to terminate the loop. */ + * to terminate the loop. + */ for (u = f->shared->mtab.nmounts - 1; u < f->shared->mtab.nmounts; u--) { /* Only unmount children mounted to this top level file structure */ if(f->shared->mtab.child[u].file->parent == f) { @@ -77,7 +75,7 @@ H5F__close_mounts(H5F_t *f) f->shared->mtab.nmounts--; f->nmounts--; } - } /* end if */ + } HDassert(f->nmounts == 0); @@ -100,7 +98,7 @@ done: * *------------------------------------------------------------------------- */ -static herr_t +herr_t H5F__mount(H5G_loc_t *loc, const char *name, H5F_t *child, hid_t H5_ATTR_UNUSED plist_id) { H5G_t *mount_point = NULL; /*mount point group */ @@ -112,9 +110,9 @@ H5F__mount(H5G_loc_t *loc, const char *name, H5F_t *child, hid_t H5_ATTR_UNUSED H5G_name_t mp_path; /* Mount point group hier. path */ H5O_loc_t mp_oloc; /* Mount point object location */ H5G_loc_t root_loc; /* Group location of root of file to mount */ - herr_t ret_value = SUCCEED; /*return value */ + herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_PACKAGE_VOL HDassert(loc); HDassert(name && *name); @@ -162,9 +160,9 @@ H5F__mount(H5G_loc_t *loc, const char *name, H5F_t *child, hid_t H5_ATTR_UNUSED mp_loc.path = H5G_nameof(mount_point); HDassert(mp_loc.path); for(ancestor = parent; ancestor; ancestor = ancestor->parent) { - if(ancestor->shared == child->shared) - HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount would introduce a cycle") - } /* end for */ + if(ancestor->shared == child->shared) + HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount would introduce a cycle") + } /* Make certain that the parent & child files have the same "file close degree" */ if(parent->shared->fc_degree != child->shared->fc_degree) @@ -181,29 +179,29 @@ H5F__mount(H5G_loc_t *loc, const char *name, H5F_t *child, hid_t H5_ATTR_UNUSED while(lt < rt && cmp) { H5O_loc_t *oloc; /*temporary symbol table entry */ - md = (lt + rt) / 2; - oloc = H5G_oloc(parent->shared->mtab.child[md].group); - cmp = H5F_addr_cmp(mp_loc.oloc->addr, oloc->addr); - if(cmp < 0) - rt = md; - else if(cmp > 0) - lt = md + 1; - } /* end while */ + md = (lt + rt) / 2; + oloc = H5G_oloc(parent->shared->mtab.child[md].group); + cmp = H5F_addr_cmp(mp_loc.oloc->addr, oloc->addr); + if(cmp < 0) + rt = md; + else if(cmp > 0) + lt = md + 1; + } if(cmp > 0) md++; if(!cmp) - HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount point is already in use") + HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount point is already in use") /* Make room in the table */ if(parent->shared->mtab.nmounts >= parent->shared->mtab.nalloc) { - unsigned n = MAX(16, 2 * parent->shared->mtab.nalloc); - H5F_mount_t *x = (H5F_mount_t *)H5MM_realloc(parent->shared->mtab.child, n * sizeof(parent->shared->mtab.child[0])); + unsigned n = MAX(16, 2 * parent->shared->mtab.nalloc); + H5F_mount_t *x = (H5F_mount_t *)H5MM_realloc(parent->shared->mtab.child, n * sizeof(parent->shared->mtab.child[0])); - if(!x) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for mount table") - parent->shared->mtab.child = x; - parent->shared->mtab.nalloc = n; - } /* end if */ + if(!x) + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for mount table") + parent->shared->mtab.child = x; + parent->shared->mtab.nalloc = n; + } /* Insert into table */ HDmemmove(parent->shared->mtab.child + md + 1, parent->shared->mtab.child + md, @@ -228,19 +226,19 @@ H5F__mount(H5G_loc_t *loc, const char *name, H5F_t *child, hid_t H5_ATTR_UNUSED /* We pass H5G_UNKNOWN as object type; search all IDs */ if(H5G_name_replace(NULL, H5G_NAME_MOUNT, mp_loc.oloc->file, mp_loc.path->full_path_r, root_loc.oloc->file, root_loc.path->full_path_r) < 0) - HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "unable to replace name") + HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "unable to replace name") done: if(ret_value < 0) { if(mount_point) { if(H5G_close(mount_point) < 0) HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "unable to close mounted group") - } /* end if */ + } else { if(H5G_loc_free(&mp_loc) < 0) HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "unable to free mount location") - } /* end else */ - } /* end if */ + } + } FUNC_LEAVE_NOAPI_VOL(ret_value) } /* end H5F__mount() */ @@ -264,7 +262,7 @@ done: * *------------------------------------------------------------------------- */ -static herr_t +herr_t H5F__unmount(H5G_loc_t *loc, const char *name) { H5G_t *child_group = NULL; /* Child's group in parent mtab */ @@ -279,7 +277,7 @@ H5F__unmount(H5G_loc_t *loc, const char *name) int child_idx; /* Index of child in parent's mtab */ herr_t ret_value = SUCCEED; /*return value */ - FUNC_ENTER_STATIC_VOL + FUNC_ENTER_PACKAGE_VOL HDassert(loc); HDassert(name && *name); @@ -304,41 +302,43 @@ H5F__unmount(H5G_loc_t *loc, const char *name) if(child->parent && H5F_addr_eq(mp_oloc.addr, mnt_oloc->addr)) { unsigned u; /*counters */ - /* - * We've been given the root group of the child. We do a reverse - * lookup in the parent's mount table to find the correct entry. - */ - parent = child->parent; - for(u = 0; u < parent->shared->mtab.nmounts; u++) { - if(parent->shared->mtab.child[u].file->shared == child->shared) { + /* + * We've been given the root group of the child. We do a reverse + * lookup in the parent's mount table to find the correct entry. + */ + parent = child->parent; + for(u = 0; u < parent->shared->mtab.nmounts; u++) { + if(parent->shared->mtab.child[u].file->shared == child->shared) { /* Found the correct index */ child_idx = (int)u; break; - } /* end if */ - } /* end for */ - } else { + } + } + } + else { unsigned lt, rt, md = 0; /*binary search indices */ int cmp; /*binary search comparison value*/ - /* - * We've been given the mount point in the parent. We use a binary - * search in the parent to locate the mounted file, if any. - */ - parent = child; /*we guessed wrong*/ - lt = 0; - rt = parent->shared->mtab.nmounts; - cmp = -1; - while(lt < rt && cmp) { - md = (lt + rt) / 2; - mnt_oloc = H5G_oloc(parent->shared->mtab.child[md].group); - cmp = H5F_addr_cmp(mp_oloc.addr, mnt_oloc->addr); - if (cmp<0) - rt = md; - else - lt = md + 1; - } /* end while */ - if(cmp) - HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "not a mount point") + /* We've been given the mount point in the parent. We use a binary + * search in the parent to locate the mounted file, if any. + */ + parent = child; /*we guessed wrong*/ + lt = 0; + rt = parent->shared->mtab.nmounts; + cmp = -1; + + while(lt < rt && cmp) { + md = (lt + rt) / 2; + mnt_oloc = H5G_oloc(parent->shared->mtab.child[md].group); + cmp = H5F_addr_cmp(mp_oloc.addr, mnt_oloc->addr); + if (cmp<0) + rt = md; + else + lt = md + 1; + } + + if(cmp) + HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "not a mount point") /* Found the correct index, set the info about the child */ child_idx = (int)md; @@ -426,48 +426,59 @@ H5F_is_mount(const H5F_t *file) /*------------------------------------------------------------------------- - * Function: H5Fmount + * Function: H5Fmount * - * Purpose: Mount file CHILD_ID onto the group specified by LOC_ID and - * NAME using mount properties PLIST_ID. + * Purpose: Mount file CHILD_ID onto the group specified by LOC_ID and + * NAME using mount properties PLIST_ID. * - * Return: Non-negative on success/Negative on failure - * - * Programmer: Robb Matzke - * Tuesday, October 6, 1998 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t H5Fmount(hid_t loc_id, const char *name, hid_t child_id, hid_t plist_id) { - H5G_loc_t loc; - H5F_t *child = NULL; - herr_t ret_value = SUCCEED; /* Return value */ + H5G_loc_t loc; /* Parent location */ + H5F_t *child = NULL; /* Child object */ + H5I_type_t loc_type; /* ID type of location */ + H5I_type_t child_type; /* ID type of child */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE4("e", "i*sii", loc_id, name, child_id, plist_id); /* Check arguments */ - if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") - if(!name || !*name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") - if(NULL == (child = (H5F_t *)H5I_object_verify(child_id, H5I_FILE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") + loc_type = H5I_get_type(loc_id); + if(H5I_FILE != loc_type && H5I_GROUP != loc_type) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "loc_id parameter not a file or group ID") + if(!name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "name parameter cannot be NULL") + if(!*name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "name parameter cannot be the empty string") + child_type = H5I_get_type(child_id); + if(H5I_FILE != child_type) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "child_id parameter not a file ID") if(H5P_DEFAULT == plist_id) plist_id = H5P_FILE_MOUNT_DEFAULT; else if(TRUE != H5P_isa_class(plist_id, H5P_FILE_MOUNT)) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not property list") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "plist_id is not a property list ID") /* Set up collective metadata if appropriate */ if(H5CX_set_loc(loc_id) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't set collective metadata read info") - /* Do the mount */ + /* Get the location object */ + if(H5G_loc(loc_id, &loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "could not get location object") + + /* Get the child object */ + if(NULL == (child = (H5F_t *)H5I_object_verify(child_id, H5I_FILE))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "could not get child object") + + /* Perform the mount operation */ if(H5F__mount(&loc, name, child, plist_id) < 0) - HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "unable to mount file") + HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "unable to mount file") done: FUNC_LEAVE_API(ret_value) @@ -475,46 +486,51 @@ done: /*------------------------------------------------------------------------- - * Function: H5Funmount - * - * Purpose: Given a mount point, dissassociate the mount point's file - * from the file mounted there. Do not close either file. + * Function: H5Funmount * - * The mount point can either be the group in the parent or the - * root group of the mounted file (both groups have the same - * name). If the mount point was opened before the mount then - * it's the group in the parent, but if it was opened after the - * mount then it's the root group of the child. + * Purpose: Given a mount point, dissassociate the mount point's file + * from the file mounted there. Do not close either file. * - * Return: Non-negative on success/Negative on failure + * The mount point can either be the group in the parent or the + * root group of the mounted file (both groups have the same + * name). If the mount point was opened before the mount then + * it's the group in the parent, but if it was opened after the + * mount then it's the root group of the child. * - * Programmer: Robb Matzke - * Tuesday, October 6, 1998 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t H5Funmount(hid_t loc_id, const char *name) { - H5G_loc_t loc; - herr_t ret_value=SUCCEED; /* Return value */ + H5G_loc_t loc; /* Parent location */ + H5I_type_t loc_type; /* ID type of location */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "i*s", loc_id, name); - /* Check args */ - if(H5G_loc(loc_id, &loc) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") - if(!name || !*name) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") + /* Check arguments */ + loc_type = H5I_get_type(loc_id); + if(H5I_FILE != loc_type && H5I_GROUP != loc_type) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "loc_id parameter not a file or group ID") + if(!name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "name parameter cannot be NULL") + if(!*name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "name parameter cannot be the empty string") /* Set up collective metadata if appropriate */ if(H5CX_set_loc(loc_id) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't set collective metadata read info") - /* Unmount */ + /* Get the location object */ + if(H5G_loc(loc_id, &loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "could not get location object") + + /* Perform the unmount operation */ if(H5F__unmount(&loc, name) < 0) - HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "unable to unmount file") + HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "unable to unmount file") done: FUNC_LEAVE_API(ret_value) @@ -522,12 +538,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5F_mount_count_ids_recurse + * Function: H5F__mount_count_ids_recurse * - * Purpose: Helper routine for counting number of open IDs in mount + * Purpose: Helper routine for counting number of open IDs in mount * hierarchy. * - * Return: <none> + * Return: void * * Programmer: Quincey Koziol * Tuesday, July 19, 2005 @@ -535,11 +551,11 @@ done: *------------------------------------------------------------------------- */ static void -H5F_mount_count_ids_recurse(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs) +H5F__mount_count_ids_recurse(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs) { unsigned u; /* Local index value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_STATIC_NOERR /* Sanity check */ HDassert(f); @@ -564,20 +580,20 @@ H5F_mount_count_ids_recurse(H5F_t *f, unsigned *nopen_files, unsigned *nopen_obj if(H5G_get_shared_count(f->shared->mtab.child[u].group) > 1) *nopen_objs += 1; - H5F_mount_count_ids_recurse(f->shared->mtab.child[u].file, nopen_files, nopen_objs); + H5F__mount_count_ids_recurse(f->shared->mtab.child[u].file, nopen_files, nopen_objs); } - } /* end for */ + } FUNC_LEAVE_NOAPI_VOID -} /* end H5F_mount_count_ids_recurse() */ +} /* end H5F__mount_count_ids_recurse() */ /*------------------------------------------------------------------------- - * Function: H5F_mount_count_ids + * Function: H5F__mount_count_ids * - * Purpose: Count the number of open file & object IDs in a mount hierarchy + * Purpose: Count the number of open file & object IDs in a mount hierarchy * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Tues, July 19, 2005 @@ -585,9 +601,9 @@ H5F_mount_count_ids_recurse(H5F_t *f, unsigned *nopen_files, unsigned *nopen_obj *------------------------------------------------------------------------- */ herr_t -H5F_mount_count_ids(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs) +H5F__mount_count_ids(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs) { - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_PACKAGE_NOERR /* Sanity check */ HDassert(f); @@ -599,10 +615,10 @@ H5F_mount_count_ids(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs) f = f->parent; /* Count open IDs in the hierarchy */ - H5F_mount_count_ids_recurse(f, nopen_files, nopen_objs); + H5F__mount_count_ids_recurse(f, nopen_files, nopen_objs); FUNC_LEAVE_NOAPI(SUCCEED) -} /* end H5F_mount_count_ids() */ +} /* end H5F__mount_count_ids() */ /*------------------------------------------------------------------------- @@ -648,11 +664,11 @@ done: /*------------------------------------------------------------------------- - * Function: H5F_flush_mounts + * Function: H5F_flush_mounts * - * Purpose: Flush a mount hierarchy + * Purpose: Flush a mount hierarchy * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Fri, August 21, 2009 @@ -715,22 +731,22 @@ H5F_traverse_mount(H5O_loc_t *oloc/*in,out*/) * of file2, which is mounted somewhere in file3. */ do { - /* - * Use a binary search to find the potential mount point in the mount - * table for the parent - */ - lt = 0; - rt = parent->shared->mtab.nmounts; - cmp = -1; - while(lt < rt && cmp) { - md = (lt + rt) / 2; - mnt_oloc = H5G_oloc(parent->shared->mtab.child[md].group); - cmp = H5F_addr_cmp(oloc->addr, mnt_oloc->addr); - if(cmp < 0) - rt = md; - else - lt = md + 1; - } /* end while */ + /* + * Use a binary search to find the potential mount point in the mount + * table for the parent + */ + lt = 0; + rt = parent->shared->mtab.nmounts; + cmp = -1; + while(lt < rt && cmp) { + md = (lt + rt) / 2; + mnt_oloc = H5G_oloc(parent->shared->mtab.child[md].group); + cmp = H5F_addr_cmp(oloc->addr, mnt_oloc->addr); + if(cmp < 0) + rt = md; + else + lt = md + 1; + } /* Copy root info over to ENT */ if(0 == cmp) { diff --git a/src/H5Fpkg.h b/src/H5Fpkg.h index 050e426..f815005 100644 --- a/src/H5Fpkg.h +++ b/src/H5Fpkg.h @@ -30,18 +30,18 @@ #include "H5Fprivate.h" /* Other public headers needed by this file */ -#include "H5Bpublic.h" /* B-tree header, for H5B_NUM_BTREE_ID */ +#include "H5Bpublic.h" /* B-tree header, for H5B_NUM_BTREE_ID */ /* Other private headers needed by this file */ -#include "H5private.h" /* Generic Functions */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5FLprivate.h" /* Free Lists */ -#include "H5FOprivate.h" /* File objects */ -#include "H5FSprivate.h" /* File free space */ -#include "H5Gprivate.h" /* Groups */ -#include "H5Oprivate.h" /* Object header messages */ -#include "H5PBprivate.h" /* Page buffer */ -#include "H5UCprivate.h" /* Reference counted object functions */ +#include "H5private.h" /* Generic Functions */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5FLprivate.h" /* Free Lists */ +#include "H5FOprivate.h" /* File objects */ +#include "H5FSprivate.h" /* File free space */ +#include "H5Gprivate.h" /* Groups */ +#include "H5Oprivate.h" /* Object header messages */ +#include "H5PBprivate.h" /* Page buffer */ +#include "H5UCprivate.h" /* Reference counted object functions */ /* @@ -394,13 +394,10 @@ H5FL_EXTERN(H5F_file_t); /******************************/ /* General routines */ -H5F_t *H5F_new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, - hid_t fapl_id, H5FD_t *lf); +H5_DLL H5F_t *H5F__new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t *lf); H5_DLL herr_t H5F__dest(H5F_t *f, hbool_t flush); -H5_DLL H5F_t *H5F__create(const char *filename, unsigned flags, hid_t fcpl_id, - hid_t fapl_id); -H5_DLL H5F_t * H5F__open(const char *filename, unsigned flags, hid_t fcpl_id, - hid_t fapl_id); +H5_DLL H5F_t *H5F__create(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id); +H5_DLL H5F_t *H5F__open(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id); H5_DLL herr_t H5F__flush(H5F_t *f, H5F_scope_t scope); H5_DLL herr_t H5F__flush_real(H5F_t *f); H5_DLL htri_t H5F__is_hdf5(const char *name); @@ -408,8 +405,7 @@ H5_DLL herr_t H5F_get_objects(const H5F_t *f, unsigned types, size_t max_index, H5_DLL herr_t H5F__get_freespace(H5F_t *f, hsize_t *tot_space); H5_DLL ssize_t H5F__get_file_image(H5F_t *f, void *buf_ptr, size_t buf_len); H5_DLL herr_t H5F__get_info(H5F_t *f, H5F_info2_t *finfo); -H5_DLL ssize_t H5F__get_free_sections(H5F_t *f, H5FD_mem_t type, - size_t nsects, H5F_sect_info_t *sect_info); +H5_DLL ssize_t H5F__get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t *sect_info); H5_DLL herr_t H5F__get_metadata_read_retry_info(H5F_t *file, H5F_retry_info_t *info); H5_DLL herr_t H5F__format_convert(H5F_t *f); H5_DLL herr_t H5F__start_swmr_write(H5F_t *f); @@ -418,9 +414,10 @@ H5_DLL herr_t H5F__close_cb(H5F_t *f); H5_DLL herr_t H5F__set_libver_bounds(H5F_t *f, H5F_libver_t low, H5F_libver_t high); /* File mount related routines */ +H5_DLL herr_t H5F__mount(H5G_loc_t *loc, const char *name, H5F_t *child, hid_t plist_id); +H5_DLL herr_t H5F__unmount(H5G_loc_t *loc, const char *name); H5_DLL herr_t H5F__close_mounts(H5F_t *f); -H5_DLL int H5F_term_unmount_cb(void *obj_ptr, hid_t obj_id, void *key); -H5_DLL herr_t H5F_mount_count_ids(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs); +H5_DLL herr_t H5F__mount_count_ids(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs); /* Superblock related routines */ H5_DLL herr_t H5F__super_init(H5F_t *f); @@ -430,18 +427,14 @@ H5_DLL herr_t H5F__super_free(H5F_super_t *sblock); /* Superblock extension related routines */ H5_DLL herr_t H5F_super_ext_open(H5F_t *f, haddr_t ext_addr, H5O_loc_t *ext_ptr); -H5_DLL herr_t H5F__super_ext_write_msg(H5F_t *f, unsigned id, void *mesg, - hbool_t may_create, unsigned mesg_flags); +H5_DLL herr_t H5F__super_ext_write_msg(H5F_t *f, unsigned id, void *mesg, hbool_t may_create, unsigned mesg_flags); H5_DLL herr_t H5F__super_ext_remove_msg(H5F_t *f, unsigned id); H5_DLL herr_t H5F__super_ext_close(H5F_t *f, H5O_loc_t *ext_ptr, hbool_t was_created); /* Metadata accumulator routines */ -H5_DLL herr_t H5F__accum_read(H5F_t *f, H5FD_mem_t type, haddr_t addr, - size_t size, void *buf); -H5_DLL herr_t H5F__accum_write(H5F_t *f, H5FD_mem_t type, haddr_t addr, - size_t size, const void *buf); -H5_DLL herr_t H5F__accum_free(H5F_t *f, H5FD_mem_t type, haddr_t addr, - hsize_t size); +H5_DLL herr_t H5F__accum_read(H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size, void *buf); +H5_DLL herr_t H5F__accum_write(H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size, const void *buf); +H5_DLL herr_t H5F__accum_free(H5F_t *f, H5FD_mem_t type, haddr_t addr, hsize_t size); H5_DLL herr_t H5F__accum_flush(H5F_t *f); H5_DLL herr_t H5F__accum_reset(H5F_t *f, hbool_t flush); @@ -451,10 +444,9 @@ H5_DLL H5F_file_t * H5F_sfile_search(H5FD_t *lf); H5_DLL herr_t H5F_sfile_remove(H5F_file_t *shared); /* External file cache routines */ -H5_DLL H5F_efc_t *H5F_efc_create(unsigned max_nfiles); -H5_DLL H5F_t *H5F__efc_open(H5F_t *parent, const char *name, unsigned flags, - hid_t fcpl_id, hid_t fapl_id); -H5_DLL unsigned H5F_efc_max_nfiles(H5F_efc_t *efc); +H5_DLL H5F_efc_t *H5F__efc_create(unsigned max_nfiles); +H5_DLL H5F_t *H5F__efc_open(H5F_t *parent, const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id); +H5_DLL unsigned H5F__efc_max_nfiles(H5F_efc_t *efc); H5_DLL herr_t H5F__efc_release(H5F_efc_t *efc); H5_DLL herr_t H5F__efc_destroy(H5F_efc_t *efc); H5_DLL herr_t H5F__efc_try_close(H5F_t *f); @@ -462,8 +454,7 @@ H5_DLL herr_t H5F__efc_try_close(H5F_t *f); /* Space allocation routines */ H5_DLL haddr_t H5F__alloc(H5F_t *f, H5F_mem_t type, hsize_t size, haddr_t *frag_addr, hsize_t *frag_size); H5_DLL herr_t H5F__free(H5F_t *f, H5F_mem_t type, haddr_t addr, hsize_t size); -H5_DLL htri_t H5F__try_extend(H5F_t *f, H5FD_mem_t type, haddr_t blk_end, - hsize_t extra_requested); +H5_DLL htri_t H5F__try_extend(H5F_t *f, H5FD_mem_t type, haddr_t blk_end, hsize_t extra_requested); /* Functions that get/retrieve values from VFD layer */ H5_DLL herr_t H5F__set_eoa(const H5F_t *f, H5F_mem_t type, haddr_t addr); @@ -476,8 +467,7 @@ H5_DLL herr_t H5F__evict_cache_entries(H5F_t *f); /* Testing functions */ #ifdef H5F_TESTING -H5_DLL herr_t H5F_get_sohm_mesg_count_test(hid_t fid, unsigned type_id, - size_t *mesg_count); +H5_DLL herr_t H5F_get_sohm_mesg_count_test(hid_t fid, unsigned type_id, size_t *mesg_count); H5_DLL herr_t H5F_check_cached_stab_test(hid_t file_id); H5_DLL herr_t H5F_get_maxaddr_test(hid_t file_id, haddr_t *maxaddr); H5_DLL herr_t H5F_get_sbe_addr_test(hid_t file_id, haddr_t *sbe_addr); diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h index 3e77700..f06d4d0 100644 --- a/src/H5Fprivate.h +++ b/src/H5Fprivate.h @@ -296,7 +296,7 @@ typedef struct H5F_t H5F_t; #define H5F_BASE_ADDR(F) ((F)->shared->sblock->base_addr) #define H5F_SYM_LEAF_K(F) ((F)->shared->sblock->sym_leaf_k) #define H5F_KVALUE(F,T) ((F)->shared->sblock->btree_k[(T)->id]) -#define H5F_NREFS(F) ((F)->shared->nrefs) +#define H5F_NREFS(F) ((F)->shared->nrefs) #define H5F_SIZEOF_ADDR(F) ((F)->shared->sizeof_addr) #define H5F_SIZEOF_SIZE(F) ((F)->shared->sizeof_size) #define H5F_SOHM_ADDR(F) ((F)->shared->sohm_addr) @@ -713,8 +713,7 @@ typedef enum H5F_prefix_open_t { /***************************************/ /* Private functions */ -H5_DLL H5F_t *H5F_open(const char *name, unsigned flags, hid_t fcpl_id, - hid_t fapl_id); +H5_DLL H5F_t *H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id); H5_DLL herr_t H5F_try_close(H5F_t *f, hbool_t *was_closed/*out*/); H5_DLL herr_t H5F_start_swmr_write(H5F_t *file); @@ -795,10 +794,8 @@ H5_DLL herr_t H5F_traverse_mount(struct H5O_loc_t *oloc/*in,out*/); H5_DLL herr_t H5F_flush_mounts(H5F_t *f); /* Functions that operate on blocks of bytes wrt super block */ -H5_DLL herr_t H5F_block_read(H5F_t *f, H5FD_mem_t type, haddr_t addr, - size_t size, void *buf/*out*/); -H5_DLL herr_t H5F_block_write(H5F_t *f, H5FD_mem_t type, haddr_t addr, - size_t size, const void *buf); +H5_DLL herr_t H5F_block_read(H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size, void *buf/*out*/); +H5_DLL herr_t H5F_block_write(H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size, const void *buf); /* Functions that flush or evict */ H5_DLL herr_t H5F_flush_tagged_metadata(H5F_t *f, haddr_t tag); @@ -851,8 +848,7 @@ H5_DLL H5F_t *H5F_prefix_open_file(H5F_t *primary_file, H5F_prefix_open_t prefix /* Global heap CWFS routines */ H5_DLL herr_t H5F_cwfs_add(H5F_t *f, struct H5HG_heap_t *heap); H5_DLL herr_t H5F_cwfs_find_free_heap(H5F_t *f, size_t need, haddr_t *addr); -H5_DLL herr_t H5F_cwfs_advance_heap(H5F_t *f, struct H5HG_heap_t *heap, - hbool_t add_heap); +H5_DLL herr_t H5F_cwfs_advance_heap(H5F_t *f, struct H5HG_heap_t *heap, hbool_t add_heap); H5_DLL herr_t H5F_cwfs_remove_heap(H5F_file_t *shared, struct H5HG_heap_t *heap); /* Debugging functions */ diff --git a/src/H5Gdeprec.c b/src/H5Gdeprec.c index fc346f8..f6c6d8f 100644 --- a/src/H5Gdeprec.c +++ b/src/H5Gdeprec.c @@ -1118,7 +1118,7 @@ H5G__get_objinfo_cb(H5G_loc_t H5_ATTR_UNUSED *grp_loc/*in*/, const char *name, c /* Go retrieve the object information */ /* (don't need index & heap info) */ HDassert(obj_loc); - if(H5O_get_info(obj_loc->oloc, FALSE, &oinfo) < 0) + if(H5O_get_info(obj_loc->oloc, &oinfo, H5O_INFO_BASIC|H5O_INFO_TIME|H5O_INFO_HDR) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to get object info") /* Get mapped object type */ diff --git a/src/H5Gloc.c b/src/H5Gloc.c index 7273a89..f5a14a1 100644 --- a/src/H5Gloc.c +++ b/src/H5Gloc.c @@ -76,7 +76,7 @@ typedef struct { /* User data for getting an object's info in a group */ typedef struct { /* downward */ - hbool_t want_ih_info; /* Whether to retrieve the index & heap info */ + unsigned fields; /* which fields in H5O_info_t struct to fill in */ /* upward */ H5O_info_t *oinfo; /* Object information to retrieve */ @@ -684,7 +684,7 @@ H5G_loc_info_cb(H5G_loc_t H5_ATTR_UNUSED *grp_loc/*in*/, const char H5_ATTR_UNUS HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "name doesn't exist") /* Query object information */ - if(H5O_get_info(obj_loc->oloc, udata->want_ih_info, udata->oinfo) < 0) + if(H5O_get_info(obj_loc->oloc, udata->oinfo, udata->fields) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't get object info") done: @@ -710,7 +710,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5G_loc_info(const H5G_loc_t *loc, const char *name, hbool_t want_ih_info, H5O_info_t *oinfo/*out*/) +H5G_loc_info(const H5G_loc_t *loc, const char *name, H5O_info_t *oinfo/*out*/, unsigned fields) { H5G_loc_info_t udata; /* User data for traversal callback */ herr_t ret_value = SUCCEED; /* Return value */ @@ -723,7 +723,7 @@ H5G_loc_info(const H5G_loc_t *loc, const char *name, hbool_t want_ih_info, H5O_i HDassert(oinfo); /* Set up user data for locating object */ - udata.want_ih_info = want_ih_info; + udata.fields = fields; udata.oinfo = oinfo; /* Traverse group hierarchy to locate object */ diff --git a/src/H5Gnode.c b/src/H5Gnode.c index 2ae3d538..72b3633 100644 --- a/src/H5Gnode.c +++ b/src/H5Gnode.c @@ -1274,7 +1274,8 @@ H5G__node_copy(H5F_t *f, const void H5_ATTR_UNUSED *_lt_key, haddr_t addr, HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, H5_ITER_ERROR, "unable to get link name") /* Check if the object pointed by the soft link exists in the source file */ - if(H5G_loc_info(&grp_loc, link_name, FALSE, &oinfo) >= 0) { + /* Only basic information is needed */ + if(H5G_loc_info(&grp_loc, link_name, &oinfo, H5O_INFO_BASIC) >= 0) { tmp_src_ent.header = oinfo.addr; src_ent = &tmp_src_ent; } /* end if */ diff --git a/src/H5Gprivate.h b/src/H5Gprivate.h index 427f14b..95dfef5 100644 --- a/src/H5Gprivate.h +++ b/src/H5Gprivate.h @@ -277,7 +277,7 @@ H5_DLL herr_t H5G_loc_find_by_idx(const H5G_loc_t *loc, const char *group_name, H5G_loc_t *obj_loc/*out*/); H5_DLL htri_t H5G_loc_exists(const H5G_loc_t *loc, const char *name); H5_DLL herr_t H5G_loc_info(const H5G_loc_t *loc, const char *name, - hbool_t want_ih_info, H5O_info_t *oinfo/*out*/); + H5O_info_t *oinfo/*out*/, unsigned fields); H5_DLL herr_t H5G_loc_set_comment(const H5G_loc_t *loc, const char *name, const char *comment); H5_DLL ssize_t H5G_loc_get_comment(const H5G_loc_t *loc, const char *name, @@ -31,8 +31,8 @@ #include "H5private.h" /* Generic Functions */ #include "H5ACprivate.h" /* Metadata cache */ #include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ #include "H5Ipkg.h" /* IDs */ #include "H5MMprivate.h" /* Memory management */ #include "H5Oprivate.h" /* Object headers */ @@ -75,16 +75,16 @@ typedef struct { } H5I_id_type_t; typedef struct { - H5I_search_func_t app_cb; /* Application's callback routine */ - void *app_key; /* Application's "key" (user data) */ - void *ret_obj; /* Object to return */ + H5I_search_func_t app_cb; /* Application's callback routine */ + void *app_key; /* Application's "key" (user data) */ + void *ret_obj; /* Object to return */ } H5I_search_ud_t; /* User data for iterator callback for ID iteration */ typedef struct { - H5I_search_func_t user_func; /* 'User' function to invoke */ - void *user_udata; /* User data to pass to 'user' function */ - hbool_t app_ref; /* Whether this is an appl. ref. call */ + H5I_search_func_t user_func; /* 'User' function to invoke */ + void *user_udata; /* User data to pass to 'user' function */ + hbool_t app_ref; /* Whether this is an appl. ref. call */ } H5I_iterate_ud_t; /* User data for H5I__clear_type_cb */ @@ -126,26 +126,26 @@ static void *H5I__remove_verify(hid_t id, H5I_type_t id_type); static void *H5I__remove_common(H5I_id_type_t *type_ptr, hid_t id); static int H5I__inc_type_ref(H5I_type_t type); static int H5I__get_type_ref(H5I_type_t type); +static int H5I__search_cb(void *obj, hid_t id, void *_udata); static H5I_id_info_t *H5I__find_id(hid_t id); static ssize_t H5I__get_name(const H5G_loc_t *loc, char *name, size_t size); #ifdef H5I_DEBUG_OUTPUT +static int H5I__debug_cb(void *_item, void *_key, void *_udata); static herr_t H5I__debug(H5I_type_t type); #endif /* H5I_DEBUG_OUTPUT */ /*------------------------------------------------------------------------- - * Function: H5I_term_package + * Function: H5I_term_package * - * Purpose: Terminate the H5I interface: release all memory, reset all - * global variables to initial values. This only happens if all - * types have been destroyed from other interfaces. + * Purpose: Terminate the H5I interface: release all memory, reset all + * global variables to initial values. This only happens if all + * types have been destroyed from other interfaces. * - * Return: Success: Positive if any action was taken that might - * affect some other interface; zero otherwise. + * Return: Success: Positive if any action was taken that might + * affect some other interface; zero otherwise. * - * Failure: Negative. - * - * Programmer: Unknown + * Failure: Negative. * *------------------------------------------------------------------------- */ @@ -241,7 +241,7 @@ H5Iregister_type(size_t hash_size, unsigned reserved, H5I_free_t free_func) } /* end else */ /* Allocate new ID class */ - if(NULL == (cls = H5FL_MALLOC(H5I_class_t))) + if(NULL == (cls = H5FL_CALLOC(H5I_class_t))) HGOTO_ERROR(H5E_ATOM, H5E_CANTALLOC, H5I_BADID, "ID class allocation failed") /* Initialize class fields */ @@ -333,8 +333,7 @@ done: * Purpose: Query function to inform the user if a given type is * currently registered with the library. * - * Return: Success: 1 if the type is registered, 0 if it is not - * Failure: Negative + * Return: TRUE/FALSE/FAIL * *------------------------------------------------------------------------- */ @@ -358,15 +357,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5Inmembers + * Function: H5Inmembers * - * Purpose: Returns the number of members in a type. Public interface to - * H5I_nmembers. The public interface throws an error if the + * Purpose: Returns the number of members in a type. Public interface to + * H5I_nmembers. The public interface throws an error if the * supplied type does not exist. This is different than the * private interface, which will just return 0. * - * Return: Success: Zero - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: James Laird * Nathaniel Furrer @@ -409,14 +407,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_nmembers + * Function: H5I_nmembers * - * Purpose: Returns the number of members in a type. + * Purpose: Returns the number of members in a type. * - * Return: Success: Number of members; zero if the type is empty - * or has been deleted. + * Return: Success: Number of members; zero if the type is empty + * or has been deleted. * - * Failure: Negative + * Failure: Negative * * Programmer: Robb Matzke * Wednesday, March 24, 1999 @@ -445,14 +443,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5Iclear_type + * Function: H5Iclear_type * - * Purpose: Removes all objects from the type, calling the free - * function for each object regardless of the reference count. - * Public interface to H5I_clear_type. + * Purpose: Removes all objects from the type, calling the free + * function for each object regardless of the reference count. + * Public interface to H5I_clear_type. * - * Return: Success: Non-negative - * Failure: negative + * Return: SUCCEED/FAIL * * Programmer: James Laird * Nathaniel Furrer @@ -479,13 +476,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_clear_type + * Function: H5I_clear_type * - * Purpose: Removes all objects from the type, calling the free - * function for each object regardless of the reference count. + * Purpose: Removes all objects from the type, calling the free + * function for each object regardless of the reference count. * - * Return: Success: Non-negative - * Failure: negative + * Return: SUCCEED/FAIL * * Programmer: Robb Matzke * Wednesday, March 24, 1999 @@ -523,11 +519,10 @@ done: /*------------------------------------------------------------------------- * Function: H5I__clear_type_cb * - * Purpose: Attempts to free the specified ID , calling the free + * Purpose: Attempts to free the specified ID, calling the free * function for the object. * - * Return: Success: Non-negative - * Failure: negative + * Return: TRUE/FALSE/FAIL * * Programmer: Neil Fortner * Friday, July 10, 2015 @@ -547,8 +542,7 @@ H5I__clear_type_cb(void *_id, void H5_ATTR_UNUSED *key, void *_udata) HDassert(udata); HDassert(udata->type_ptr); - /* - * Do nothing to the object if the reference count is larger than + /* Do nothing to the object if the reference count is larger than * one and forcing is off. */ if(udata->force || (id->count - (!udata->app_ref * id->app_count)) <= 1) { @@ -589,15 +583,15 @@ H5I__clear_type_cb(void *_id, void H5_ATTR_UNUSED *key, void *_udata) /*------------------------------------------------------------------------- - * Function: H5Idestroy_type + * Function: H5Idestroy_type * - * Purpose: Destroys a type along with all atoms in that type - * regardless of their reference counts. Destroying IDs - * involves calling the free-func for each ID's object and - * then adding the ID struct to the ID free list. Public - * interface to H5I__destroy_type. + * Purpose: Destroys a type along with all atoms in that type + * regardless of their reference counts. Destroying IDs + * involves calling the free-func for each ID's object and + * then adding the ID struct to the ID free list. Public + * interface to H5I__destroy_type. * - * Return: Zero on success/Negative on failure + * Return: SUCCEED/FAIL * * Programmer: Nathaniel Furrer * James Laird @@ -623,14 +617,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5I__destroy_type + * Function: H5I__destroy_type * - * Purpose: Destroys a type along with all atoms in that type - * regardless of their reference counts. Destroying IDs - * involves calling the free-func for each ID's object and - * then adding the ID struct to the ID free list. + * Purpose: Destroys a type along with all atoms in that type + * regardless of their reference counts. Destroying IDs + * involves calling the free-func for each ID's object and + * then adding the ID struct to the ID free list. * - * Return: Zero on success/Negative on failure + * Return: SUCCEED/FAIL * * Programmer: Nathaniel Furrer * James Laird @@ -678,8 +672,8 @@ done: * * Purpose: Public interface to H5I_register. * - * Return: Success: New object id. - * Failure: Negative + * Return: Success: New object ID + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ @@ -712,7 +706,7 @@ done: * for the type the ID is in and incorporating the type into * the ID which is returned to the user. * - * Return: Success: New object id + * Return: Success: New object ID * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- @@ -738,10 +732,10 @@ H5I_register(H5I_type_t type, const void *object, hbool_t app_ref) /* Create the struct & its ID */ new_id = H5I_MAKE(type, type_ptr->nextid); - id_ptr->id = new_id; - id_ptr->count = 1; /* initial reference count */ - id_ptr->app_count = !!app_ref; - id_ptr->obj_ptr = object; + id_ptr->id = new_id; + id_ptr->count = 1; /* initial reference count */ + id_ptr->app_count = !!app_ref; + id_ptr->obj_ptr = object; /* Insert into the type */ if (H5SL_insert(type_ptr->ids, id_ptr, &id_ptr->id) < 0) @@ -777,17 +771,18 @@ done: herr_t H5I_register_with_id(H5I_type_t type, const void *object, hbool_t app_ref, hid_t id) { - H5I_id_type_t *type_ptr; /* ptr to the type */ - H5I_id_info_t *id_ptr; /* ptr to the new ID information */ + H5I_id_type_t *type_ptr; /* ptr to the type */ + H5I_id_info_t *id_ptr; /* ptr to the new ID information */ herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_NOAPI(FAIL) /* Check arguments */ + HDassert(object); /* Make sure ID is not already in use */ if(NULL != (id_ptr = H5I__find_id(id))) - HGOTO_ERROR(H5E_ATOM, H5E_BADRANGE, FAIL, "ID already in use?!") + HGOTO_ERROR(H5E_ATOM, H5E_BADRANGE, FAIL, "ID already in use") /* Make sure type number is valid */ if(type <= H5I_BADID || type >= H5I_next_type) @@ -808,10 +803,10 @@ H5I_register_with_id(H5I_type_t type, const void *object, hbool_t app_ref, hid_t HGOTO_ERROR(H5E_ATOM, H5E_NOSPACE, FAIL, "memory allocation failed") /* Create the struct & insert requested ID */ - id_ptr->id = id; - id_ptr->count = 1; /*initial reference count*/ - id_ptr->app_count = !!app_ref; - id_ptr->obj_ptr = object; + id_ptr->id = id; + id_ptr->count = 1; /* initial reference count*/ + id_ptr->app_count = !!app_ref; + id_ptr->obj_ptr = object; /* Insert into the type */ if(H5SL_insert(type_ptr->ids, id_ptr, &id_ptr->id) < 0) @@ -824,13 +819,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_subst + * Function: H5I_subst * - * Purpose: Substitute a new object pointer for the specified ID. + * Purpose: Substitute a new object pointer for the specified ID. * - * Return: Success: Non-null previous object pointer associated - * with the specified ID. - * Failure: NULL + * Return: Success: Non-NULL previous object pointer associated + * with the specified ID. + * Failure: NULL * * Programmer: Quincey Koziol * Saturday, February 27, 2010 @@ -862,51 +857,45 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_object + * Function: H5I_object * - * Purpose: Find an object pointer for the specified ID. + * Purpose: Find an object pointer for the specified ID. * - * Return: Success: Non-null object pointer associated with the - * specified ID. - * Failure: NULL + * Return: Success: Non-NULL object pointer associated with the + * specified ID * - * Programmer: Unknown + * Failure: NULL * *------------------------------------------------------------------------- */ void * H5I_object(hid_t id) { - H5I_id_info_t *id_ptr; /*ptr to the new atom */ - void *ret_value = NULL; /*return value */ + H5I_id_info_t *id_ptr; /* Pointer to the new atom */ + void *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI_NOERR /* General lookup of the ID */ if(NULL != (id_ptr = H5I__find_id(id))) { /* Get the object pointer to return */ - /* (Casting away const OK -QAK) */ - ret_value = (void *)id_ptr->obj_ptr; - } /* end if */ + ret_value = (void *)id_ptr->obj_ptr; /* (Casting away const OK -QAK) */ + } FUNC_LEAVE_NOAPI(ret_value) } /* end H5I_object() */ /*------------------------------------------------------------------------- - * Function: H5Iobject_verify + * Function: H5Iobject_verify * - * Purpose: Find an object pointer for the specified ID, verifying that - * its in a particular type. Public interface to - * H5I_object_verify. + * Purpose: Find an object pointer for the specified ID, verifying that + * its in a particular type. Public interface to + * H5I_object_verify. * - * Return: Success: Non-null object pointer associated with the - * specified ID. - * Failure: NULL - * - * Programmer: Nathaniel Furrer - * James Laird - * Friday, April 23, 2004 + * Return: Success: Non-NULL object pointer associated with the + * specified ID. + * Failure: NULL * *------------------------------------------------------------------------- */ @@ -932,14 +921,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_object_verify + * Function: H5I_object_verify * - * Purpose: Find an object pointer for the specified ID, verifying that - * its in a particular type. + * Purpose: Find an object pointer for the specified ID, verifying that + * its in a particular type. * - * Return: Success: Non-null object pointer associated with the - * specified ID. - * Failure: NULL + * Return: Success: Non-NULL object pointer associated with the + * specified ID. + * Failure: NULL * * Programmer: Quincey Koziol * Wednesday, July 31, 2002 @@ -949,8 +938,8 @@ done: void * H5I_object_verify(hid_t id, H5I_type_t id_type) { - H5I_id_info_t *id_ptr = NULL; /*ptr to the new atom */ - void *ret_value = NULL; /*return value */ + H5I_id_info_t *id_ptr = NULL; /* Pointer to the new atom */ + void *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI_NOERR @@ -959,24 +948,25 @@ H5I_object_verify(hid_t id, H5I_type_t id_type) /* Verify that the type of the ID is correct & lookup the ID */ if(id_type == H5I_TYPE(id) && NULL != (id_ptr = H5I__find_id(id))) { /* Get the object pointer to return */ - /* (Casting away const OK -QAK) */ - ret_value = (void *)id_ptr->obj_ptr; - } /* end if */ + ret_value = (void *)id_ptr->obj_ptr; /* (Casting away const OK -QAK) */ + } FUNC_LEAVE_NOAPI(ret_value) } /* H5I_object_verify() */ /*------------------------------------------------------------------------- - * Function: H5I_get_type + * Function: H5I_get_type * - * Purpose: Given an object ID return the type to which it - * belongs. The ID need not be the ID of an object which - * currently exists because the type number is encoded - * in the object ID. + * Purpose: Given an object ID return the type to which it + * belongs. The ID need not be the ID of an object which + * currently exists because the type number is encoded + * in the object ID. * - * Return: Success: A valid type number - * Failure: H5I_BADID, a negative value. + * Return: Success: A positive integer (corresponding to an H5I_type_t + * enum value for library ID types, but not for user + * ID types). + * Failure: H5I_BADID * * Programmer: Robb Matzke * Friday, February 19, 1999 @@ -1000,17 +990,17 @@ H5I_get_type(hid_t id) /*------------------------------------------------------------------------- - * Function: H5Iget_type + * Function: H5Iget_type * - * Purpose: The public version of H5I_get_type(), obtains a type number - * when given an ID. The ID need not be the ID of an - * object which currently exists because the type number is - * encoded as part of the ID. + * Purpose: The public version of H5I_get_type(), obtains a type number + * when given an ID. The ID need not be the ID of an + * object which currently exists because the type number is + * encoded as part of the ID. * - * Return: Success: Type number - * Failure: H5I_BADID, a negative value - * - * Programmer: Unknown + * Return: Success: A positive integer (corresponding to an H5I_type_t + * enum value for library ID types, but not for user + * ID types). + * Failure: H5I_BADID * *------------------------------------------------------------------------- */ @@ -1033,16 +1023,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5Iremove_verify + * Function: H5Iremove_verify * - * Purpose: Removes the specified ID from its type, first checking that the - * type of the ID and the type type are the same. Public interface to - * H5I__remove_verify. + * Purpose: Removes the specified ID from its type, first checking that the + * type of the ID and the type type are the same. Public interface to + * H5I__remove_verify. * - * Return: Success: A pointer to the object that was removed, the - * same pointer which would have been found by - * calling H5I_object(). - * Failure: NULL + * Return: Success: A pointer to the object that was removed, the + * same pointer which would have been found by + * calling H5I_object(). + * Failure: NULL * * Programmer: James Laird * Nathaniel Furrer @@ -1069,15 +1059,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5I__remove_verify + * Function: H5I__remove_verify * - * Purpose: Removes the specified ID from its type, first checking that - * the ID's type is the same as the ID type supplied as an argument + * Purpose: Removes the specified ID from its type, first checking that + * the ID's type is the same as the ID type supplied as an argument * - * Return: Success: A pointer to the object that was removed, the - * same pointer which would have been found by - * calling H5I_object(). - * Failure: NULL + * Return: Success: A pointer to the object that was removed, the + * same pointer which would have been found by + * calling H5I_object(). + * Failure: NULL * * Programmer: James Laird * Nat Furrer @@ -1102,14 +1092,14 @@ H5I__remove_verify(hid_t id, H5I_type_t id_type) /*------------------------------------------------------------------------- - * Function: H5I__remove_common + * Function: H5I__remove_common * - * Purpose: Common code to remove a specified ID from its type. + * Purpose: Common code to remove a specified ID from its type. * - * Return: Success: A pointer to the object that was removed, the - * same pointer which would have been found by - * calling H5I_object(). - * Failure: NULL + * Return: Success: A pointer to the object that was removed, the + * same pointer which would have been found by + * calling H5I_object(). + * Failure: NULL * * Programmer: Quincey Koziol * October 3, 2013 @@ -1144,14 +1134,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_remove + * Function: H5I_remove * - * Purpose: Removes the specified ID from its type. + * Purpose: Removes the specified ID from its type. * - * Return: Success: A pointer to the object that was removed, the - * same pointer which would have been found by - * calling H5I_object(). - * Failure: NULL + * Return: Success: A pointer to the object that was removed, the + * same pointer which would have been found by + * calling H5I_object(). + * Failure: NULL * * Programmer: Unknown * @@ -1184,14 +1174,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5Idec_ref + * Function: H5Idec_ref * - * Purpose: Decrements the number of references outstanding for an ID. + * Purpose: Decrements the number of references outstanding for an ID. * If the reference count for an ID reaches zero, the object * will be closed. * - * Return: Success: New reference count - * Failure: Negative + * Return: Success: New reference count + * Failure: -1 * * Programmer: Quincey Koziol * Dec 7, 2003 @@ -1203,16 +1193,16 @@ H5Idec_ref(hid_t id) { int ret_value = 0; /* Return value */ - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE1("Is", "i", id); /* Check arguments */ if(id < 0) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, (-1), "invalid ID") /* Do actual decrement operation */ if((ret_value = H5I_dec_app_ref(id)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTDEC, FAIL, "can't decrement ID ref count") + HGOTO_ERROR(H5E_ATOM, H5E_CANTDEC, (-1), "can't decrement ID ref count") done: FUNC_LEAVE_API(ret_value) @@ -1220,19 +1210,17 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_dec_ref - * - * Purpose: Decrements the number of references outstanding for an ID. - * This will fail if the type is not a reference counted type. - * The ID type's 'free' function will be called for the ID - * if the reference count for the ID reaches 0 and a free - * function has been defined at type creation time. + * Function: H5I_dec_ref * - * Return: Success: New reference count. + * Purpose: Decrements the number of references outstanding for an ID. + * This will fail if the type is not a reference counted type. + * The ID type's 'free' function will be called for the ID + * if the reference count for the ID reaches 0 and a free + * function has been defined at type creation time. * - * Failure: Negative + * Return: Success: New reference count * - * Programmer: Unknown + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -1242,17 +1230,16 @@ H5I_dec_ref(hid_t id) H5I_id_info_t *id_ptr; /* Pointer to the new ID */ int ret_value = 0; /* Return value */ - FUNC_ENTER_NOAPI(FAIL) + FUNC_ENTER_NOAPI((-1)) /* Sanity check */ HDassert(id >= 0); /* General lookup of the ID */ if(NULL == (id_ptr = H5I__find_id(id))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't locate ID") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, (-1), "can't locate ID") - /* - * If this is the last reference to the object then invoke the type's + /* If this is the last reference to the object then invoke the type's * free method on the object. If the free method is undefined or * successful then remove the object from the type; otherwise leave * the object in the type without decrementing the reference @@ -1276,11 +1263,11 @@ H5I_dec_ref(hid_t id) if(!type_ptr->cls->free_func || (type_ptr->cls->free_func)((void *)id_ptr->obj_ptr) >= 0) { /* Remove the node from the type */ if(NULL == H5I__remove_common(type_ptr, id)) - HGOTO_ERROR(H5E_ATOM, H5E_CANTDELETE, FAIL, "can't remove ID node") + HGOTO_ERROR(H5E_ATOM, H5E_CANTDELETE, (-1), "can't remove ID node") ret_value = 0; } /* end if */ else - ret_value = FAIL; + ret_value = -1; } /* end if */ else { --(id_ptr->count); @@ -1293,13 +1280,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5I_dec_app_ref + * Function: H5I_dec_app_ref * - * Purpose: H5I_dec_ref wrapper for case of modifying the application ref. - * count for an ID as well as normal reference count. + * Purpose: H5I_dec_ref wrapper for case of modifying the application ref. + * count for an ID as well as normal reference count. * - * Return: Success: New app. reference count. - * Failure: Negative + * Return: Success: New app. reference count + * Failure: -1 * * Programmer: Quincey Koziol * Sept 16, 2010 @@ -1312,20 +1299,20 @@ H5I_dec_app_ref(hid_t id) H5I_id_info_t *id_ptr; /* Pointer to the new ID */ int ret_value = 0; /* Return value */ - FUNC_ENTER_NOAPI(FAIL) + FUNC_ENTER_NOAPI((-1)) /* Sanity check */ HDassert(id >= 0); /* Call regular decrement reference count routine */ if((ret_value = H5I_dec_ref(id)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTDEC, FAIL, "can't decrement ID ref count") + HGOTO_ERROR(H5E_ATOM, H5E_CANTDEC, (-1), "can't decrement ID ref count") /* Check if the ID still exists */ if(ret_value > 0) { /* General lookup of the ID */ if(NULL == (id_ptr = H5I__find_id(id))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't locate ID") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, (-1), "can't locate ID") /* Adjust app_ref */ --(id_ptr->app_count); @@ -1346,8 +1333,8 @@ done: * Purpose: H5I_dec_app_ref wrapper for case of always closing the ID, * even when the free routine fails * - * Return: Success: New app. reference count. - * Failure: Negative + * Return: Success: New app. reference count + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -1356,7 +1343,7 @@ H5I_dec_app_ref_always_close(hid_t id) { int ret_value = 0; /* Return value */ - FUNC_ENTER_NOAPI(FAIL) + FUNC_ENTER_NOAPI((-1)) /* Sanity check */ HDassert(id >= 0); @@ -1374,7 +1361,7 @@ H5I_dec_app_ref_always_close(hid_t id) */ H5I_remove(id); - HGOTO_ERROR(H5E_ATOM, H5E_CANTDEC, FAIL, "can't decrement ID ref count") + HGOTO_ERROR(H5E_ATOM, H5E_CANTDEC, (-1), "can't decrement ID ref count") } done: @@ -1388,7 +1375,7 @@ done: * Purpose: Increments the number of references outstanding for an ID. * * Return: Success: New reference count - * Failure: Negative + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -1397,16 +1384,16 @@ H5Iinc_ref(hid_t id) { int ret_value; /* Return value */ - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE1("Is", "i", id); /* Check arguments */ if (id < 0) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, (-1), "invalid ID") /* Do actual increment operation */ if ((ret_value = H5I_inc_ref(id, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTINC, FAIL, "can't increment ID ref count") + HGOTO_ERROR(H5E_ATOM, H5E_CANTINC, (-1), "can't increment ID ref count") done: FUNC_LEAVE_API(ret_value) @@ -1418,8 +1405,8 @@ done: * * Purpose: Increment the reference count for an object. * - * Return: Success: The new reference count. - * Failure: Negative + * Return: Success: The new reference count + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -1429,14 +1416,14 @@ H5I_inc_ref(hid_t id, hbool_t app_ref) H5I_id_info_t *id_ptr; /* Pointer to the ID */ int ret_value = 0; /* Return value */ - FUNC_ENTER_NOAPI(FAIL) + FUNC_ENTER_NOAPI((-1)) /* Sanity check */ HDassert(id >= 0); /* General lookup of the ID */ if (NULL == (id_ptr = H5I__find_id(id))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't locate ID") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, (-1), "can't locate ID") /* Adjust reference counts */ ++(id_ptr->count); @@ -1457,7 +1444,7 @@ done: * Purpose: Retrieves the number of references outstanding for an ID. * * Return: Success: Reference count - * Failure: Negative + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -1466,16 +1453,16 @@ H5Iget_ref(hid_t id) { int ret_value; /* Return value */ - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE1("Is", "i", id); /* Check arguments */ if (id < 0) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, (-1), "invalid ID") /* Do actual retrieve operation */ if ((ret_value = H5I_get_ref(id, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't get ID ref count") + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't get ID ref count") done: FUNC_LEAVE_API(ret_value) @@ -1487,8 +1474,8 @@ done: * * Purpose: Retrieve the reference count for an object. * - * Return: Success: The reference count. - * Failure: Negative + * Return: Success: The reference count + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -1498,14 +1485,14 @@ H5I_get_ref(hid_t id, hbool_t app_ref) H5I_id_info_t *id_ptr; /* Pointer to the ID */ int ret_value = 0; /* Return value */ - FUNC_ENTER_NOAPI(FAIL) + FUNC_ENTER_NOAPI((-1)) /* Sanity check */ HDassert(id >= 0); /* General lookup of the ID */ if (NULL == (id_ptr = H5I__find_id(id))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't locate ID") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, (-1), "can't locate ID") /* Set return value */ ret_value = (int)(app_ref ? id_ptr->app_count : id_ptr->count); @@ -1521,7 +1508,7 @@ done: * Purpose: Increments the number of references outstanding for an ID type. * * Return: Success: New reference count - * Failure: Negative + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -1530,19 +1517,19 @@ H5Iinc_type_ref(H5I_type_t type) { int ret_value; /* Return value */ - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE1("Is", "It", type); /* Check arguments */ if (type <= 0 || type >= H5I_next_type) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID type") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, (-1), "invalid ID type") if (H5I_IS_LIB_TYPE(type)) - HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "cannot call public function on library type") + HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, (-1), "cannot call public function on library type") /* Do actual increment operation */ if ((ret_value = H5I__inc_type_ref(type)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTINC, FAIL, "can't increment ID type ref count") + HGOTO_ERROR(H5E_ATOM, H5E_CANTINC, (-1), "can't increment ID type ref count") done: FUNC_LEAVE_API(ret_value) @@ -1555,7 +1542,7 @@ done: * Purpose: Increment the reference count for an ID type. * * Return: Success: The new reference count - * Failure: Negative + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -1573,7 +1560,7 @@ H5I__inc_type_ref(H5I_type_t type) /* Check arguments */ type_ptr = H5I_id_type_list_g[type]; if (!type_ptr) - HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "invalid type") + HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, (-1), "invalid type") /* Set return value */ ret_value = (int)(++(type_ptr->init_count)); @@ -1603,20 +1590,20 @@ done: * release (DER). * * Return: Success: Number of references to type - * Failure: Negative + * Failure: -1 * *------------------------------------------------------------------------- */ herr_t H5Idec_type_ref(H5I_type_t type) { - herr_t ret_value; /* Return value */ + herr_t ret_value = 0; /* Return value */ - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE1("e", "It", type); if (H5I_IS_LIB_TYPE(type)) - HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "cannot call public function on library type") + HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, (-1), "cannot call public function on library type") ret_value = H5I_dec_type_ref(type); @@ -1640,24 +1627,24 @@ done: * be set to H5I_UNINIT). * * Return: Success: Number of references to type - * Failure: Negative + * Failure: -1 * *------------------------------------------------------------------------- */ -herr_t +int H5I_dec_type_ref(H5I_type_t type) { H5I_id_type_t *type_ptr; /* Pointer to the ID type */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = 0; /* Return value */ - FUNC_ENTER_NOAPI(FAIL) + FUNC_ENTER_NOAPI((-1)) if (type <= H5I_BADID || type >= H5I_next_type) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid type number") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, (-1), "invalid type number") type_ptr = H5I_id_type_list_g[type]; if (type_ptr == NULL || type_ptr->init_count <= 0) - HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "invalid type") + HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, (-1), "invalid type") /* Decrement the number of users of the atomic type. If this is the * last user of the type then release all atoms from the type and @@ -1684,7 +1671,7 @@ done: * Purpose: Retrieves the number of references outstanding for a type. * * Return: Success: Reference count - * Failure: Negative + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -1693,19 +1680,19 @@ H5Iget_type_ref(H5I_type_t type) { int ret_value; /* Return value */ - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE1("Is", "It", type); /* Check arguments */ if (type <= 0 || type >= H5I_next_type) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "invalid ID type") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, (-1), "invalid ID type") if (H5I_IS_LIB_TYPE(type)) - HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, FAIL, "cannot call public function on library type") + HGOTO_ERROR(H5E_ATOM, H5E_BADGROUP, (-1), "cannot call public function on library type") /* Do actual retrieve operation */ if ((ret_value = H5I__get_type_ref(type)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't get ID type ref count") + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't get ID type ref count") done: FUNC_LEAVE_API(ret_value) @@ -1717,9 +1704,9 @@ done: * * Purpose: Retrieve the reference count for an ID type. * - * Return: Success: The reference count. + * Return: Success: The reference count * - * Failure: Negative + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -1753,9 +1740,7 @@ done: * Purpose: Check if the given id is valid. An id is valid if it is in * use and has an application reference count of at least 1. * - * Return: Success: TRUE if the id is valid, FALSE otherwise. - * - * Failure: Negative (never fails currently) + * Return: TRUE/FALSE/FAIL * *------------------------------------------------------------------------- */ @@ -1786,24 +1771,29 @@ done: * Calls "user" callback search function, and then sets return * value, based on the result of that callback. * - * Return: Success: The first object in the type for which FUNC - * returns non-zero. NULL if FUNC returned zero - * for every object in the type. - * Failure: NULL + * Return: Success: H5_ITER_CONT (0) or H5_ITER_STOP (1) + * Failure: H5_ITER_ERROR (-1) * *------------------------------------------------------------------------- */ static int H5I__search_cb(void *obj, hid_t id, void *_udata) { - H5I_search_ud_t *udata = (H5I_search_ud_t *)_udata; /* User data for callback */ - int ret_value = -1; /* Callback return value */ + H5I_search_ud_t *udata = (H5I_search_ud_t *)_udata; /* User data for callback */ + herr_t cb_ret_val; /* User callback return value */ + int ret_value = H5_ITER_ERROR; /* Callback return value */ FUNC_ENTER_STATIC_NOERR - ret_value = (*udata->app_cb)(obj, id, udata->app_key); - if (ret_value > 0) - udata->ret_obj = obj; + cb_ret_val = (*udata->app_cb)(obj, id, udata->app_key); + + /* Set the return value based on the callback's return value */ + if(cb_ret_val > 0) { + ret_value = H5_ITER_STOP; /* terminate iteration early */ + udata->ret_obj = obj; /* also set out parameter */ + } + else if(cb_ret_val < 0) + ret_value = H5_ITER_ERROR; /* indicate failure (which terminates iteration) */ FUNC_LEAVE_NOAPI(ret_value) } /* end H5I__search_cb() */ @@ -1867,8 +1857,8 @@ done: * function, and then sets return value, based on the result of * that callback. * - * Return: Success: Non-negative on success - * Failure: Negative + * Return: Success: H5_ITER_CONT (0) or H5_ITER_STOP (1) + * Failure: H5_ITER_ERROR (-1) * *------------------------------------------------------------------------- */ @@ -1881,17 +1871,21 @@ H5I__iterate_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) FUNC_ENTER_STATIC_NOERR - /* Don't make callback if app_ref is set and the appl. ref count is 0 */ + /* Only invoke the callback function if this ID is visible externally and + * its reference count is positive. + */ if((!udata->app_ref) || (item->app_count > 0)) { - herr_t cb_ret_val; + herr_t cb_ret_val; - /* (Casting away const OK) */ - cb_ret_val = (*udata->user_func)((void *)item->obj_ptr, item->id, udata->user_udata); + /* Invoke callback function */ + cb_ret_val = (*udata->user_func)((void *)item->obj_ptr, item->id, udata->user_udata); /* (Casting away const OK) */ + + /* Set the return value based on the callback's return value */ if(cb_ret_val > 0) ret_value = H5_ITER_STOP; /* terminate iteration early */ else if(cb_ret_val < 0) ret_value = H5_ITER_ERROR; /* indicate failure (which terminates iteration) */ - } /* end if */ + } FUNC_LEAVE_NOAPI(ret_value) } /* end H5I__iterate_cb() */ @@ -1925,8 +1919,8 @@ H5I__iterate_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) herr_t H5I_iterate(H5I_type_t type, H5I_search_func_t func, void *udata, hbool_t app_ref) { - H5I_id_type_t *type_ptr; /*ptr to the type */ - herr_t ret_value = SUCCEED; /*return value */ + H5I_id_type_t *type_ptr; /* Pointer to the type */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -1941,9 +1935,9 @@ H5I_iterate(H5I_type_t type, H5I_search_func_t func, void *udata, hbool_t app_re herr_t iter_status; /* Iteration status */ /* Set up iterator user data */ - iter_udata.user_func = func; - iter_udata.user_udata = udata; - iter_udata.app_ref = app_ref; + iter_udata.user_func = func; + iter_udata.user_udata = udata; + iter_udata.app_ref = app_ref; /* Iterate over IDs */ if ((iter_status = H5SL_iterate(type_ptr->ids, H5I__iterate_cb, &iter_udata)) < 0) @@ -2003,11 +1997,11 @@ done: * Failure: -1 * * Comments: Public function - * If `name' is non-NULL then write up to `size' bytes into that + * If 'name' is non-NULL then write up to 'size' bytes into that * buffer and always return the length of the entry name. - * Otherwise `size' is ignored and the function does not store the name, + * Otherwise 'size' is ignored and the function does not store the name, * just returning the number of characters required to store the name. - * If an error occurs then the buffer pointed to by `name' (NULL or non-NULL) + * If an error occurs then the buffer pointed to by 'name' (NULL or non-NULL) * is unchanged and the function returns a negative value. * If a zero is returned for the name's length, then there is no name * associated with the ID. @@ -2020,16 +2014,16 @@ H5Iget_name(hid_t id, char *name/*out*/, size_t size) H5G_loc_t loc; /* Object location */ ssize_t ret_value; /* Return value */ - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE3("Zs", "ixz", id, name, size); /* Get object location */ if(H5G_loc(id, &loc) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't retrieve object location") + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't retrieve object location") /* Call internal routine to retrieve object's name */ if((ret_value = H5I__get_name(&loc, name, size)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't retrieve object name") + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't retrieve object name") done: FUNC_LEAVE_API(ret_value) @@ -2047,15 +2041,15 @@ done: * Return: Success: The length of the name * Failure: -1 * - * Programmer: Quincey Koziol - * January 9, 2018 + * Programmer: Quincey Koziol + * January 9, 2018 * *------------------------------------------------------------------------- */ static ssize_t H5I__get_name(const H5G_loc_t *loc, char *name, size_t size) { - ssize_t ret_value = FAIL; /* Return value */ + ssize_t ret_value = -1; /* Return value */ FUNC_ENTER_STATIC_VOL @@ -2064,7 +2058,7 @@ H5I__get_name(const H5G_loc_t *loc, char *name, size_t size) /* Retrieve object's name */ if((ret_value = H5G_get_name(loc, name, size, NULL)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't retrieve object name") + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't retrieve object name") done: FUNC_LEAVE_NOAPI_VOL(ret_value) @@ -2086,13 +2080,22 @@ done: hid_t H5Iget_file_id(hid_t obj_id) { - hid_t ret_value = H5I_INVALID_HID; /* Return value */ + H5I_type_t type; /* ID type */ + hid_t ret_value = H5I_INVALID_HID; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("i", "i", obj_id); - if ((ret_value = H5I_get_file_id(obj_id, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, H5I_INVALID_HID, "can't retrieve file ID") + /* Get object type */ + type = H5I_TYPE(obj_id); + + /* Call internal function */ + if (H5I_FILE == type || H5I_DATATYPE == type || H5I_GROUP == type || H5I_DATASET == type || H5I_ATTR == type) { + if ((ret_value = H5I_get_file_id(obj_id, type)) < 0) + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, H5I_INVALID_HID, "can't retrieve file ID") + } + else + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, H5I_INVALID_HID, "not an ID of a file object") done: FUNC_LEAVE_API(ret_value) @@ -2106,30 +2109,27 @@ done: * ID given an object ID. * * Return: Success: The file ID associated with the object - * * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ hid_t -H5I_get_file_id(hid_t obj_id, hbool_t app_ref) +H5I_get_file_id(hid_t obj_id, H5I_type_t type) { - H5I_type_t type; /* ID type */ - hid_t ret_value = H5I_INVALID_HID; /* Return value */ + hid_t ret_value = H5I_INVALID_HID; /* Return value */ FUNC_ENTER_NOAPI_NOINIT - /* Get object type */ - type = H5I_TYPE(obj_id); + /* Process based on object type */ if (type == H5I_FILE) { /* Increment reference count on file ID */ - if(H5I_inc_ref(obj_id, app_ref) < 0) + if(H5I_inc_ref(obj_id, TRUE) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTSET, H5I_INVALID_HID, "incrementing file ID failed") /* Set return value */ ret_value = obj_id; } - else if (type == H5I_DATATYPE || type == H5I_GROUP || type == H5I_DATASET || type == H5I_ATTR) { + else { H5G_loc_t loc; /* Location of object */ /* Get the object location information */ @@ -2137,11 +2137,9 @@ H5I_get_file_id(hid_t obj_id, hbool_t app_ref) HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, H5I_INVALID_HID, "can't get object location") /* Get the file ID for the object */ - if((ret_value = H5F_get_id(loc.oloc->file, app_ref)) < 0) + if((ret_value = H5F_get_id(loc.oloc->file, TRUE)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, H5I_INVALID_HID, "can't get file ID") } - else - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, H5I_INVALID_HID, "invalid object ID") done: FUNC_LEAVE_NOAPI(ret_value) @@ -2154,16 +2152,16 @@ done: * * Purpose: Dump the contents of an ID to stderr for debugging. * - * Return: SUCCEED/FAIL + * Return: H5_ITER_CONT (always) * *------------------------------------------------------------------------- */ -static herr_t +static int H5I__debug_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) { - H5I_id_info_t *item = (H5I_id_info_t *)_item; /* Pointer to the ID node */ - H5I_type_t type = *(H5I_type_t *)_udata; /* User data */ - H5G_name_t *path = NULL; + H5I_id_info_t *item = (H5I_id_info_t *)_item; /* Pointer to the ID node */ + H5I_type_t type = *(H5I_type_t *)_udata; /* User data */ + H5G_name_t *path = NULL; /* Path to file object */ FUNC_ENTER_STATIC_NOERR @@ -2174,17 +2172,20 @@ H5I__debug_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) /* Get the group location, so we get get the name */ switch (type) { case H5I_GROUP: + { path = H5G_nameof((H5G_t*)item->obj_ptr); break; - + } case H5I_DATASET: + { path = H5D_nameof((H5D_t*)item->obj_ptr); break; - + } case H5I_DATATYPE: + { path = H5T_nameof((H5T_t*)item->obj_ptr); break; - + } case H5I_UNINIT: case H5I_BADID: case H5I_FILE: @@ -2209,7 +2210,7 @@ H5I__debug_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) HDfprintf(stderr, " full_path = %s\n", H5RS_get_str(path->full_path_r)); } - FUNC_LEAVE_NOAPI(SUCCEED) + FUNC_LEAVE_NOAPI(H5_ITER_CONT) } /* end H5I__debug_cb() */ diff --git a/src/H5Ipkg.h b/src/H5Ipkg.h index 16d7d67..2c1d81f 100644 --- a/src/H5Ipkg.h +++ b/src/H5Ipkg.h @@ -67,7 +67,7 @@ /* Testing functions */ #ifdef H5I_TESTING -H5_DLL ssize_t H5I_get_name_test(hid_t id, char *name/*out*/, size_t size, +H5_DLL ssize_t H5I__get_name_test(hid_t id, char *name/*out*/, size_t size, hbool_t *cached); #endif /* H5I_TESTING */ diff --git a/src/H5Iprivate.h b/src/H5Iprivate.h index 25cea4f..3bfde93 100644 --- a/src/H5Iprivate.h +++ b/src/H5Iprivate.h @@ -72,7 +72,7 @@ H5_DLL void *H5I_subst(hid_t id, const void *new_object); H5_DLL void *H5I_object(hid_t id); H5_DLL void *H5I_object_verify(hid_t id, H5I_type_t id_type); H5_DLL H5I_type_t H5I_get_type(hid_t id); -H5_DLL hid_t H5I_get_file_id(hid_t obj_id, hbool_t app_ref); +H5_DLL hid_t H5I_get_file_id(hid_t obj_id, H5I_type_t id_type); H5_DLL void *H5I_remove(hid_t id); H5_DLL herr_t H5I_iterate(H5I_type_t type, H5I_search_func_t func, void *udata, hbool_t app_ref); H5_DLL int H5I_get_ref(hid_t id, hbool_t app_ref); @@ -80,7 +80,7 @@ H5_DLL int H5I_inc_ref(hid_t id, hbool_t app_ref); H5_DLL int H5I_dec_ref(hid_t id); H5_DLL int H5I_dec_app_ref(hid_t id); H5_DLL int H5I_dec_app_ref_always_close(hid_t id); -H5_DLL herr_t H5I_dec_type_ref(H5I_type_t type); +H5_DLL int H5I_dec_type_ref(H5I_type_t type); #endif /* _H5Iprivate_H */ diff --git a/src/H5Itest.c b/src/H5Itest.c index 426c026..4b54835 100644 --- a/src/H5Itest.c +++ b/src/H5Itest.c @@ -28,12 +28,12 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Gprivate.h" /* Groups */ -#include "H5Ipkg.h" /* IDs */ +#include "H5private.h" /* Generic Functions */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5CXprivate.h" /* API Contexts */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Gprivate.h" /* Groups */ +#include "H5Ipkg.h" /* IDs */ /****************/ @@ -63,44 +63,44 @@ /*------------------------------------------------------------------------- - * Function: H5I_get_name_test + * Function: H5I__get_name_test * - * Purpose: Testing version of H5Iget_name() + * Purpose: Testing version of H5Iget_name() * - * Return: Success: The length of name. - * Failure: -1 + * Return: Success: The length of name. + * Failure: -1 * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, July 27, 2010 * *------------------------------------------------------------------------- */ ssize_t -H5I_get_name_test(hid_t id, char *name/*out*/, size_t size, hbool_t *cached) +H5I__get_name_test(hid_t id, char *name/*out*/, size_t size, hbool_t *cached) { - H5G_loc_t loc; /* Object location */ - hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ - ssize_t ret_value = -1; /* Return value */ + H5G_loc_t loc; /* Object location */ + hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ + ssize_t ret_value = -1; /* Return value */ - FUNC_ENTER_NOAPI(FAIL) + FUNC_ENTER_PACKAGE /* Get object location */ if(H5G_loc(id, &loc) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't retrieve object location") + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't retrieve object location") /* Set API context */ if(H5CX_push() < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTSET, FAIL, "can't set API context") + HGOTO_ERROR(H5E_SYM, H5E_CANTSET, (-1), "can't set API context") api_ctx_pushed = TRUE; /* Call internal group routine to retrieve object's name */ if((ret_value = H5G_get_name(&loc, name, size, cached)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't retrieve object name") + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't retrieve object name") done: if(api_ctx_pushed && H5CX_pop() < 0) - HDONE_ERROR(H5E_SYM, H5E_CANTRESET, FAIL, "can't reset API context") + HDONE_ERROR(H5E_SYM, H5E_CANTRESET, (-1), "can't reset API context") FUNC_LEAVE_NOAPI(ret_value) -} /* end H5I_get_name_test() */ +} /* end H5I__get_name_test() */ @@ -97,6 +97,9 @@ static herr_t H5MF__close_fstype(H5F_t *f, H5F_mem_page_t type); static herr_t H5MF__delete_fstype(H5F_t *f, H5F_mem_page_t type); static herr_t H5MF__close_delete_fstype(H5F_t *f, H5F_mem_page_t type); +/* Callbacks */ +static herr_t H5MF__sects_cb(H5FS_section_info_t *_sect, void *_udata); + /*********************/ /* Package Variables */ @@ -232,7 +235,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5MF_alloc_to_fs_type + * Function: H5MF__alloc_to_fs_type * * Purpose: Map "alloc_type" to the free-space manager type * @@ -244,9 +247,9 @@ done: *------------------------------------------------------------------------- */ void -H5MF_alloc_to_fs_type(H5F_t *f, H5FD_mem_t alloc_type, hsize_t size, H5F_mem_page_t *fs_type) +H5MF__alloc_to_fs_type(H5F_t *f, H5FD_mem_t alloc_type, hsize_t size, H5F_mem_page_t *fs_type) { - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_PACKAGE_NOERR HDassert(f); HDassert(fs_type); @@ -271,7 +274,7 @@ H5MF_alloc_to_fs_type(H5F_t *f, H5FD_mem_t alloc_type, hsize_t size, H5F_mem_pag *fs_type = (H5F_mem_page_t)H5MF_ALLOC_TO_FS_AGGR_TYPE(f, alloc_type); FUNC_LEAVE_NOAPI_VOID -} /* end H5MF_alloc_to_fs_type() */ +} /* end H5MF__alloc_to_fs_type() */ /*------------------------------------------------------------------------- @@ -379,10 +382,10 @@ H5MF__create_fstype(H5F_t *f, H5F_mem_page_t type) H5MF_FSPACE_SECT_CLS_LARGE }; H5FS_create_t fs_create; /* Free space creation parameters */ hsize_t alignment; /* Alignment to use */ - hsize_t threshold; /* Threshold to use */ + hsize_t threshold; /* Threshold to use */ H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t fsm_ring; /* Ring of FSM */ - herr_t ret_value = SUCCEED; /* Return value */ + H5AC_ring_t fsm_ring; /* Ring of FSM */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC_TAG(H5AC__FREESPACE_TAG) @@ -509,7 +512,7 @@ static herr_t H5MF__delete_fstype(H5F_t *f, H5F_mem_page_t type) { H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t fsm_ring; /* Ring of FSM */ + H5AC_ring_t fsm_ring = H5AC_RING_INV; /* Ring of FSM */ haddr_t tmp_fs_addr; /* Temporary holder for free space manager address */ herr_t ret_value = SUCCEED; /* Return value */ @@ -628,10 +631,10 @@ herr_t H5MF__add_sect(H5F_t *f, H5FD_mem_t alloc_type, H5FS_t *fspace, H5MF_free_section_t *node) { H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t fsm_ring; /* Ring of FSM */ - H5MF_sect_ud_t udata; /* User data for callback */ - H5F_mem_page_t fs_type; /* Free space type (mapped from allocation type) */ - herr_t ret_value = SUCCEED; /* Return value */ + H5AC_ring_t fsm_ring = H5AC_RING_INV; /* Ring of FSM */ + H5MF_sect_ud_t udata; /* User data for callback */ + H5F_mem_page_t fs_type; /* Free space type (mapped from allocation type) */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE_TAG(H5AC__FREESPACE_TAG) @@ -639,7 +642,7 @@ H5MF__add_sect(H5F_t *f, H5FD_mem_t alloc_type, H5FS_t *fspace, H5MF_free_sectio HDassert(fspace); HDassert(node); - H5MF_alloc_to_fs_type(f, alloc_type, node->sect_info.size, &fs_type); + H5MF__alloc_to_fs_type(f, alloc_type, node->sect_info.size, &fs_type); /* Construct user data for callbacks */ udata.f = f; @@ -688,7 +691,7 @@ H5MF__find_sect(H5F_t *f, H5FD_mem_t alloc_type, hsize_t size, H5FS_t *fspace, haddr_t *addr) { H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t fsm_ring; /* Ring of FSM */ + H5AC_ring_t fsm_ring = H5AC_RING_INV; /* Ring of FSM */ H5MF_free_section_t *node; /* Free space section pointer */ htri_t ret_value = FAIL; /* Whether an existing free list node was found */ @@ -728,7 +731,7 @@ HDfprintf(stderr, "%s: freeing node\n", FUNC); #endif /* H5MF_ALLOC_DEBUG_MORE */ /* Free section node */ - if(H5MF_sect_free((H5FS_section_info_t *)node) < 0) + if(H5MF__sect_free((H5FS_section_info_t *)node) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free simple section node") } /* end if */ else { @@ -776,7 +779,7 @@ haddr_t H5MF_alloc(H5F_t *f, H5FD_mem_t alloc_type, hsize_t size) { H5AC_ring_t fsm_ring = H5AC_RING_INV; /* free space manager ring */ - H5AC_ring_t orig_ring; /* Original ring value */ + H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ H5F_mem_page_t fs_type; /* Free space type (mapped from allocation type) */ haddr_t ret_value = HADDR_UNDEF; /* Return value */ @@ -797,7 +800,7 @@ HDfprintf(stderr, "%s: alloc_type = %u, size = %Hu\n", FUNC, (unsigned)alloc_typ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "tidy of self referential fsm hack failed") } /* end if */ - H5MF_alloc_to_fs_type(f, alloc_type, size, &fs_type); + H5MF__alloc_to_fs_type(f, alloc_type, size, &fs_type); #ifdef H5MF_ALLOC_DEBUG_MORE HDfprintf(stderr, "%s: Check 1.0\n", FUNC); @@ -862,7 +865,7 @@ done: HDfprintf(stderr, "%s: Leaving: ret_value = %a, size = %Hu\n", FUNC, ret_value, size); #endif /* H5MF_ALLOC_DEBUG */ #ifdef H5MF_ALLOC_DEBUG_DUMP -H5MF_sects_dump(f, stderr); +H5MF__sects_dump(f, stderr); #endif /* H5MF_ALLOC_DEBUG_DUMP */ FUNC_LEAVE_NOAPI_TAG(ret_value) @@ -903,7 +906,7 @@ H5MF__alloc_pagefs(H5F_t *f, H5FD_mem_t alloc_type, hsize_t size) HDfprintf(stderr, "%s: alloc_type = %u, size = %Hu\n", FUNC, (unsigned)alloc_type, size); #endif /* H5MF_ALLOC_DEBUG */ - H5MF_alloc_to_fs_type(f, alloc_type, size, &ptype); + H5MF__alloc_to_fs_type(f, alloc_type, size, &ptype); switch(ptype) { case H5F_MEM_PAGE_GENERIC: @@ -936,7 +939,7 @@ HDfprintf(stderr, "%s: alloc_type = %u, size = %Hu\n", FUNC, (unsigned)alloc_typ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, HADDR_UNDEF, "can't initialize file free space") /* Create free space section for the fragment */ - if(NULL == (node = H5MF_sect_new(H5MF_FSPACE_SECT_LARGE, ret_value + size, frag_size))) + if(NULL == (node = H5MF__sect_new(H5MF_FSPACE_SECT_LARGE, ret_value + size, frag_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, HADDR_UNDEF, "can't initialize free space section") /* Add the fragment to the large free-space manager */ @@ -967,7 +970,7 @@ HDfprintf(stderr, "%s: alloc_type = %u, size = %Hu\n", FUNC, (unsigned)alloc_typ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, HADDR_UNDEF, "can't initialize file free space") HDassert(f->shared->fs_man[ptype]); - if(NULL == (node = H5MF_sect_new(H5MF_FSPACE_SECT_SMALL, (new_page + size), (f->shared->fs_page_size - size)))) + if(NULL == (node = H5MF__sect_new(H5MF_FSPACE_SECT_SMALL, (new_page + size), (f->shared->fs_page_size - size)))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, HADDR_UNDEF, "can't initialize free space section") /* Add the remaining space in the page to the manager */ @@ -997,12 +1000,12 @@ done: HDfprintf(stderr, "%s: Leaving: ret_value = %a, size = %Hu\n", FUNC, ret_value, size); #endif /* H5MF_ALLOC_DEBUG */ #ifdef H5MF_ALLOC_DEBUG_DUMP -H5MF_sects_dump(f, stderr); +H5MF__sects_dump(f, stderr); #endif /* H5MF_ALLOC_DEBUG_DUMP */ /* Release section node, if allocated and not added to section list or merged */ if(node) - if(H5MF_sect_free((H5FS_section_info_t *)node) < 0) + if(H5MF__sect_free((H5FS_section_info_t *)node) < 0) HDONE_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, HADDR_UNDEF, "can't free section node") FUNC_LEAVE_NOAPI_TAG(ret_value) @@ -1110,7 +1113,7 @@ HDfprintf(stderr, "%s: Entering - alloc_type = %u, addr = %a, size = %Hu\n", FUN HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "tidy of self referential fsm hack failed") } /* end if */ - H5MF_alloc_to_fs_type(f, alloc_type, size, &fs_type); + H5MF__alloc_to_fs_type(f, alloc_type, size, &fs_type); /* Set the ring type in the API context */ if(H5MF__fsm_type_is_self_referential(f, fs_type)) @@ -1197,7 +1200,7 @@ HDfprintf(stderr, "%s: dropping addr = %a, size = %Hu, on the floor!\n", FUNC, a /* Create the free-space section for the freed section */ ctype = H5MF_SECT_CLASS_TYPE(f, size); - if(NULL == (node = H5MF_sect_new(ctype, addr, size))) + if(NULL == (node = H5MF__sect_new(ctype, addr, size))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't initialize free space section") /* If size of the freed section is larger than threshold, add it to the free space manager */ @@ -1242,14 +1245,14 @@ done: /* Release section node, if allocated and not added to section list or merged */ if(node) - if(H5MF_sect_free((H5FS_section_info_t *)node) < 0) + if(H5MF__sect_free((H5FS_section_info_t *)node) < 0) HDONE_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free simple section node") #ifdef H5MF_ALLOC_DEBUG HDfprintf(stderr, "%s: Leaving, ret_value = %d\n", FUNC, ret_value); #endif /* H5MF_ALLOC_DEBUG */ #ifdef H5MF_ALLOC_DEBUG_DUMP -H5MF_sects_dump(f, stderr); +H5MF__sects_dump(f, stderr); #endif /* H5MF_ALLOC_DEBUG_DUMP */ FUNC_LEAVE_NOAPI_TAG(ret_value) } /* end H5MF_xfree() */ @@ -1334,7 +1337,7 @@ HDfprintf(stderr, "%s: Entering: alloc_type = %u, addr = %a, size = %Hu, extra_r } /* end if */ /* Get free space type from allocation type */ - H5MF_alloc_to_fs_type(f, alloc_type, size, &fs_type); + H5MF__alloc_to_fs_type(f, alloc_type, size, &fs_type); /* Set the ring type in the API context */ if(H5MF__fsm_type_is_self_referential(f, fs_type)) @@ -1365,7 +1368,7 @@ HDfprintf(stderr, "%s: extended = %t\n", FUNC, ret_value); HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't initialize file free space") /* Create free space section for the fragment */ - if(NULL == (node = H5MF_sect_new(H5MF_FSPACE_SECT_LARGE, end + extra_requested, frag_size))) + if(NULL == (node = H5MF__sect_new(H5MF_FSPACE_SECT_LARGE, end + extra_requested, frag_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't initialize free space section") /* Add the fragment to the large-sized free-space manager */ @@ -1436,7 +1439,7 @@ done: HDfprintf(stderr, "%s: Leaving: ret_value = %t\n", FUNC, ret_value); #endif /* H5MF_ALLOC_DEBUG */ #ifdef H5MF_ALLOC_DEBUG_DUMP -H5MF_sects_dump(f, stderr); +H5MF__sects_dump(f, stderr); #endif /* H5MF_ALLOC_DEBUG_DUMP */ FUNC_LEAVE_NOAPI_TAG(ret_value) @@ -1464,9 +1467,9 @@ H5MF_try_shrink(H5F_t *f, H5FD_mem_t alloc_type, haddr_t addr, hsize_t size) H5MF_sect_ud_t udata; /* User data for callback */ H5FS_section_class_t *sect_cls; /* Section class */ H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t fsm_ring; /* Ring of FSM */ - H5F_mem_page_t fs_type; /* Free space type */ - htri_t ret_value = FALSE; /* Return value */ + H5AC_ring_t fsm_ring = H5AC_RING_INV; /* Ring of FSM */ + H5F_mem_page_t fs_type; /* Free space type */ + htri_t ret_value = FALSE; /* Return value */ FUNC_ENTER_NOAPI_TAG(H5AC__FREESPACE_TAG, FAIL) #ifdef H5MF_ALLOC_DEBUG @@ -1485,7 +1488,7 @@ HDfprintf(stderr, "%s: Entering - alloc_type = %u, addr = %a, size = %Hu\n", FUN HDassert(sect_cls); /* Get free space type from allocation type */ - H5MF_alloc_to_fs_type(f, alloc_type, size, &fs_type); + H5MF__alloc_to_fs_type(f, alloc_type, size, &fs_type); /* Set the ring type in the API context */ if(H5MF__fsm_type_is_self_referential(f, fs_type)) @@ -1495,7 +1498,7 @@ HDfprintf(stderr, "%s: Entering - alloc_type = %u, addr = %a, size = %Hu\n", FUN H5AC_set_ring(fsm_ring, &orig_ring); /* Create free-space section for block */ - if(NULL == (node = H5MF_sect_new(sect_cls->type, addr, size))) + if(NULL == (node = H5MF__sect_new(sect_cls->type, addr, size))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't initialize free space section") /* Construct user data for callbacks */ @@ -1522,7 +1525,7 @@ done: H5AC_set_ring(orig_ring, NULL); /* Free section node allocated */ - if(node && H5MF_sect_free((H5FS_section_info_t *)node) < 0) + if(node && H5MF__sect_free((H5FS_section_info_t *)node) < 0) HDONE_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free simple section node") #ifdef H5MF_ALLOC_DEBUG @@ -1561,10 +1564,11 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); if(H5F_PAGED_AGGR(f)) { if((ret_value = H5MF__close_pagefs(f)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTFREE, FAIL, "can't close free-space managers for 'page' file space") - } /* end if */ - else + } + else { if((ret_value = H5MF__close_aggrfs(f)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTFREE, FAIL, "can't close free-space managers for 'aggr' file space") + } done: #ifdef H5MF_ALLOC_DEBUG @@ -1650,8 +1654,8 @@ herr_t H5MF_try_close(H5F_t *f) { H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t curr_ring; /* Current ring value */ - H5AC_ring_t needed_ring; /* Ring value needed for this iteration */ + H5AC_ring_t curr_ring = H5AC_RING_INV; /* Current ring value */ + H5AC_ring_t needed_ring = H5AC_RING_INV; /* Ring value needed for this iteration */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_TAG(H5AC__FREESPACE_TAG, FAIL) @@ -1689,7 +1693,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); /* Set the ring type in the API context. In most cases, we will * need H5AC_RING_RDFSM, so initialy set the ring in - * the DXPL to that value. We will alter this later if needed. + * the context to that value. We will alter this later if needed. */ H5AC_set_ring(H5AC_RING_RDFSM, &orig_ring); curr_ring = H5AC_RING_RDFSM; @@ -1706,6 +1710,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); needed_ring = H5AC_RING_MDFSM; else needed_ring = H5AC_RING_RDFSM; + if(needed_ring != curr_ring ) { H5AC_set_ring(needed_ring, NULL); curr_ring = needed_ring; @@ -1727,6 +1732,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); needed_ring = H5AC_RING_MDFSM; else needed_ring = H5AC_RING_RDFSM; + if(needed_ring != curr_ring) { H5AC_set_ring(needed_ring, NULL); curr_ring = needed_ring; @@ -1765,10 +1771,10 @@ static herr_t H5MF__close_aggrfs(H5F_t *f) { H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t curr_ring; /* Current ring value */ - H5AC_ring_t needed_ring; /* Ring value needed for this iteration. */ + H5AC_ring_t curr_ring = H5AC_RING_INV; /* Current ring value */ + H5AC_ring_t needed_ring = H5AC_RING_INV; /* Ring value needed for this iteration. */ H5FD_mem_t type; /* Memory type for iteration */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC_TAG(H5AC__FREESPACE_TAG) #ifdef H5MF_ALLOC_DEBUG @@ -1783,7 +1789,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); /* Set the ring type in the API context. In most cases, we will * need H5AC_RING_RDFSM, so initialy set the ring in - * the DXPL to that value. We will alter this later if needed. + * the context to that value. We will alter this later if needed. */ H5AC_set_ring(H5AC_RING_RDFSM, &orig_ring); curr_ring = H5AC_RING_RDFSM; @@ -1842,6 +1848,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); needed_ring = H5AC_RING_MDFSM; else needed_ring = H5AC_RING_RDFSM; + if(needed_ring != curr_ring) { H5AC_set_ring(needed_ring, NULL); curr_ring = needed_ring; @@ -1929,8 +1936,8 @@ static herr_t H5MF__close_pagefs(H5F_t *f) { H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t curr_ring; /* Current ring value */ - H5AC_ring_t needed_ring; /* Ring value needed for this iteration. */ + H5AC_ring_t curr_ring = H5AC_RING_INV; /* Current ring value */ + H5AC_ring_t needed_ring = H5AC_RING_INV; /* Ring value needed for this iteration. */ H5F_mem_page_t ptype; /* Memory type for iteration */ H5O_fsinfo_t fsinfo; /* File space info message */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1950,7 +1957,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); /* Set the ring type in the API context. In most cases, we will * need H5AC_RING_RDFSM, so initialy set the ring in - * the DXPL to that value. We will alter this later if needed. + * the context to that value. We will alter this later if needed. */ H5AC_set_ring(H5AC_RING_RDFSM, &orig_ring); curr_ring = H5AC_RING_RDFSM; @@ -2005,6 +2012,7 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); needed_ring = H5AC_RING_MDFSM; else needed_ring = H5AC_RING_RDFSM; + if(needed_ring != curr_ring) { H5AC_set_ring(needed_ring, NULL); curr_ring = needed_ring; @@ -2102,8 +2110,8 @@ static herr_t H5MF__close_shrink_eoa(H5F_t *f) { H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t curr_ring; /* Current ring value */ - H5AC_ring_t needed_ring; /* Ring value needed for this iteration. */ + H5AC_ring_t curr_ring = H5AC_RING_INV; /* Current ring value */ + H5AC_ring_t needed_ring = H5AC_RING_INV; /* Ring value needed for this iteration. */ H5F_mem_t type; H5F_mem_page_t ptype; /* Memory type for iteration */ hbool_t eoa_shrank; /* Whether an EOA shrink occurs */ @@ -2139,6 +2147,7 @@ H5MF__close_shrink_eoa(H5F_t *f) needed_ring = H5AC_RING_MDFSM; else needed_ring = H5AC_RING_RDFSM; + if(needed_ring != curr_ring) { H5AC_set_ring(needed_ring, NULL); curr_ring = needed_ring; @@ -2162,6 +2171,7 @@ H5MF__close_shrink_eoa(H5F_t *f) needed_ring = H5AC_RING_MDFSM; else needed_ring = H5AC_RING_RDFSM; + if(needed_ring != curr_ring) { H5AC_set_ring(needed_ring, NULL); curr_ring = needed_ring; @@ -2222,9 +2232,9 @@ H5MF_get_freespace(H5F_t *f, hsize_t *tot_space, hsize_t *meta_size) htri_t fs_started[H5F_MEM_PAGE_NTYPES]; /* Indicate whether the free-space manager has been started */ haddr_t fs_eoa[H5FD_MEM_NTYPES]; /* EAO for each free-space manager */ H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t curr_ring; /* Current ring value */ - H5AC_ring_t needed_ring; /* Ring value needed for this iteration. */ - herr_t ret_value = SUCCEED; /* Return value */ + H5AC_ring_t curr_ring = H5AC_RING_INV; /* Current ring value */ + H5AC_ring_t needed_ring = H5AC_RING_INV; /* Ring value needed for this iteration. */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_TAG(H5AC__FREESPACE_TAG, FAIL) @@ -2235,7 +2245,7 @@ H5MF_get_freespace(H5F_t *f, hsize_t *tot_space, hsize_t *meta_size) /* Set the ring type in the API context. In most cases, we will * need H5AC_RING_RDFSM, so initialy set the ring in - * the DXPL to that value. We will alter this later if needed. + * the context to that value. We will alter this later if needed. */ H5AC_set_ring(H5AC_RING_RDFSM, &orig_ring); curr_ring = H5AC_RING_RDFSM; @@ -2256,11 +2266,11 @@ H5MF_get_freespace(H5F_t *f, hsize_t *tot_space, hsize_t *meta_size) if(!H5F_PAGED_AGGR(f)) { /* Retrieve metadata aggregator info, if available */ - if(H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size) < 0) + if(H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query metadata aggregator stats") /* Retrieve 'small data' aggregator info, if available */ - if(H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sda_addr, &sda_size) < 0) + if(H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sda_addr, &sda_size) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query small data aggregator stats") } /* end if */ @@ -2342,7 +2352,8 @@ done: * Purpose: To retrieve free-space section information for * paged or non-paged aggregation * - * Return: SUCCEED/FAIL + * Return: Success: Number of free sections + * Failure: -1 * * Programmer: Vailin Choi; Dec 2012 * @@ -2352,15 +2363,15 @@ ssize_t H5MF_get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t *sect_info) { H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t curr_ring; /* Current ring value */ - H5AC_ring_t needed_ring; /* Ring value needed for this iteration. */ + H5AC_ring_t curr_ring = H5AC_RING_INV; /* Current ring value */ + H5AC_ring_t needed_ring = H5AC_RING_INV; /* Ring value needed for this iteration. */ size_t total_sects = 0; /* Total number of sections */ H5MF_sect_iter_ud_t sect_udata; /* User data for callback */ H5F_mem_page_t start_type, end_type; /* Memory types to iterate over */ H5F_mem_page_t ty; /* Memory type for iteration */ ssize_t ret_value = -1; /* Return value */ - FUNC_ENTER_NOAPI_TAG(H5AC__FREESPACE_TAG, FAIL) + FUNC_ENTER_NOAPI_TAG(H5AC__FREESPACE_TAG, (-1)) /* check args */ HDassert(f); @@ -2382,11 +2393,11 @@ H5MF_get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t if(f->shared->first_alloc_dealloc) { if(H5AC_cache_image_pending(f)) { if(H5AC_force_cache_image_load(f) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "forced cache image load failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, (-1), "forced cache image load failed") } /* end if */ else { if(H5MF_tidy_self_referential_fsm_hack(f) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "tidy of self referential fsm hack failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, (-1), "tidy of self referential fsm hack failed") } /* end else */ } /* end if */ @@ -2409,7 +2420,7 @@ H5MF_get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t /* Set the ring type in the API context. In most cases, we will * need H5AC_RING_RDFSM, so initialy set the ring in - * the DXPL to that value. We will alter this later if needed. + * the context to that value. We will alter this later if needed. */ H5AC_set_ring(H5AC_RING_RDFSM, &orig_ring); curr_ring = H5AC_RING_RDFSM; @@ -2431,7 +2442,7 @@ H5MF_get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t if(!f->shared->fs_man[ty] && H5F_addr_defined(f->shared->fs_addr[ty])) { if(H5MF__open_fstype(f, ty) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't open the free space manager") + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, (-1), "can't open the free space manager") HDassert(f->shared->fs_man[ty]); fs_started = TRUE; } /* end if */ @@ -2439,7 +2450,7 @@ H5MF_get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t /* Check if there's free space sections of this type */ if(f->shared->fs_man[ty]) if(H5MF__get_free_sects(f, f->shared->fs_man[ty], §_udata, &nums) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't get section info for the free space manager") + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, (-1), "can't get section info for the free space manager") /* Increment total # of sections */ total_sects += nums; @@ -2447,7 +2458,7 @@ H5MF_get_free_sections(H5F_t *f, H5FD_mem_t type, size_t nsects, H5F_sect_info_t /* Close the free space manager of this type, if we started it here */ if(fs_started) if(H5MF__close_fstype(f, ty) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTCLOSEOBJ, FAIL, "can't close file free space") + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTCLOSEOBJ, (-1), "can't close file free space") if((H5F_PAGED_AGGR(f)) && (type != H5FD_MEM_DEFAULT)) ty = (H5F_mem_page_t)(ty + H5FD_MEM_NTYPES - 2); } /* end for */ @@ -2465,7 +2476,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5MF_sects_cb() + * Function: H5MF__sects_cb() * * Purpose: Iterator callback for each free-space section * Retrieve address and size into user data @@ -2478,12 +2489,12 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5MF_sects_cb(H5FS_section_info_t *_sect, void *_udata) +H5MF__sects_cb(H5FS_section_info_t *_sect, void *_udata) { H5MF_free_section_t *sect = (H5MF_free_section_t *)_sect; H5MF_sect_iter_ud_t *udata = (H5MF_sect_iter_ud_t *)_udata; - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_STATIC_NOERR if(udata->sect_idx < udata->sect_count) { udata->sects[udata->sect_idx].addr = sect->sect_info.addr; @@ -2492,7 +2503,7 @@ H5MF_sects_cb(H5FS_section_info_t *_sect, void *_udata) } /* end if */ FUNC_LEAVE_NOAPI(SUCCEED) -} /* H5MF_sects_cb() */ +} /* H5MF__sects_cb() */ /*------------------------------------------------------------------------- @@ -2513,7 +2524,7 @@ H5MF__get_free_sects(H5F_t *f, H5FS_t *fspace, H5MF_sect_iter_ud_t *sect_udata, hsize_t hnums = 0; /* # of sections */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI(FAIL) + FUNC_ENTER_PACKAGE /* check args */ HDassert(f); @@ -2529,7 +2540,7 @@ H5MF__get_free_sects(H5F_t *f, H5FS_t *fspace, H5MF_sect_iter_ud_t *sect_udata, /* Check if we should retrieve the section info */ if(sect_udata->sects && *nums > 0) /* Iterate over all the free space sections of this type, adding them to the user's section info */ - if(H5FS_sect_iterate(f, fspace, H5MF_sects_cb, sect_udata) < 0) + if(H5FS_sect_iterate(f, fspace, H5MF__sects_cb, sect_udata) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_BADITER, FAIL, "can't iterate over sections") done: @@ -2648,8 +2659,8 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled) H5O_fsinfo_t fsinfo; /* Free space manager info message */ H5FS_stat_t fs_stat; /* Information for free-space manager */ H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ - H5AC_ring_t curr_ring; /* Current ring value */ - H5AC_ring_t needed_ring; /* Ring value needed for this iteration. */ + H5AC_ring_t curr_ring = H5AC_RING_INV; /* Current ring value */ + H5AC_ring_t needed_ring = H5AC_RING_INV; /* Ring value needed for this iteration */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_TAG(H5AC__FREESPACE_TAG, FAIL) @@ -2744,7 +2755,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled) break; for(mem_type = H5FD_MEM_SUPER; mem_type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5F_mem_t, mem_type)) { - H5MF_alloc_to_fs_type(f, mem_type, alloc_size, &fsm_type); + H5MF__alloc_to_fs_type(f, mem_type, alloc_size, &fsm_type); if(pass_count == 0) { /* this is the first pass */ HDassert(fsm_type > H5F_MEM_PAGE_DEFAULT); @@ -2781,6 +2792,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled) needed_ring = H5AC_RING_MDFSM; else needed_ring = H5AC_RING_RDFSM; + if(needed_ring != curr_ring) { H5AC_set_ring(needed_ring, NULL); curr_ring = needed_ring; @@ -2888,7 +2900,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled) break; for(mem_type = H5FD_MEM_SUPER; mem_type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5F_mem_t, mem_type)) { - H5MF_alloc_to_fs_type(f, mem_type, alloc_size, &fsm_type); + H5MF__alloc_to_fs_type(f, mem_type, alloc_size, &fsm_type); if(pass_count == 0) { /* this is the first pass */ HDassert(fsm_type > H5F_MEM_PAGE_DEFAULT); @@ -2906,6 +2918,7 @@ H5MF_settle_raw_data_fsm(H5F_t *f, hbool_t *fsm_settled) needed_ring = H5AC_RING_MDFSM; else needed_ring = H5AC_RING_RDFSM; + if(needed_ring != curr_ring) { H5AC_set_ring(needed_ring, NULL); curr_ring = needed_ring; @@ -3136,8 +3149,8 @@ H5MF_settle_meta_data_fsm(H5F_t *f, hbool_t *fsm_settled) /* should only be called if file is opened R/W */ HDassert(H5F_INTENT(f) & H5F_ACC_RDWR); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, (size_t)1, &sm_fshdr_fs_type); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, (size_t)1, &sm_fssinfo_fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, (size_t)1, &sm_fshdr_fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, (size_t)1, &sm_fssinfo_fs_type); HDassert(sm_fshdr_fs_type > H5F_MEM_PAGE_DEFAULT); HDassert(sm_fshdr_fs_type < H5F_MEM_PAGE_LARGE_SUPER); @@ -3153,8 +3166,8 @@ H5MF_settle_meta_data_fsm(H5F_t *f, hbool_t *fsm_settled) sm_sinfo_fspace = f->shared->fs_man[sm_fssinfo_fs_type]; if(H5F_PAGED_AGGR(f)) { - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, f->shared->fs_page_size + 1, &lg_fshdr_fs_type); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, f->shared->fs_page_size + 1, &lg_fssinfo_fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, f->shared->fs_page_size + 1, &lg_fshdr_fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, f->shared->fs_page_size + 1, &lg_fssinfo_fs_type); HDassert(lg_fshdr_fs_type >= H5F_MEM_PAGE_LARGE_SUPER); HDassert(lg_fshdr_fs_type < H5F_MEM_PAGE_NTYPES); @@ -3398,7 +3411,7 @@ H5MF__fsm_type_is_self_referential(H5F_t *f, H5F_mem_page_t fsm_type) H5F_mem_page_t lg_fssinfo_fsm; hbool_t result = FALSE; - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_PACKAGE_NOERR /* Sanity check */ HDassert(f); @@ -3406,12 +3419,12 @@ H5MF__fsm_type_is_self_referential(H5F_t *f, H5F_mem_page_t fsm_type) HDassert(fsm_type >= H5F_MEM_PAGE_DEFAULT); HDassert(fsm_type < H5F_MEM_PAGE_NTYPES); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, (size_t)1, &sm_fshdr_fsm); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, (size_t)1, &sm_fssinfo_fsm); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, (size_t)1, &sm_fshdr_fsm); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, (size_t)1, &sm_fssinfo_fsm); if(H5F_PAGED_AGGR(f)) { - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, f->shared->fs_page_size + 1, &lg_fshdr_fsm); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, f->shared->fs_page_size + 1, &lg_fssinfo_fsm); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, f->shared->fs_page_size + 1, &lg_fshdr_fsm); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, f->shared->fs_page_size + 1, &lg_fssinfo_fsm); result = (fsm_type == sm_fshdr_fsm) || (fsm_type == sm_fssinfo_fsm) || (fsm_type == lg_fshdr_fsm) || (fsm_type == lg_fssinfo_fsm); @@ -3460,15 +3473,15 @@ H5MF__fsm_is_self_referential(H5F_t *f, H5FS_t *fspace) HDassert(f->shared); HDassert(fspace); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, (size_t)1, &sm_fshdr_fsm); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, (size_t)1, &sm_fssinfo_fsm); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, (size_t)1, &sm_fshdr_fsm); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, (size_t)1, &sm_fssinfo_fsm); if(H5F_PAGED_AGGR(f)) { H5F_mem_page_t lg_fshdr_fsm; H5F_mem_page_t lg_fssinfo_fsm; - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, f->shared->fs_page_size + 1, &lg_fshdr_fsm); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, f->shared->fs_page_size + 1, &lg_fssinfo_fsm); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, f->shared->fs_page_size + 1, &lg_fshdr_fsm); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, f->shared->fs_page_size + 1, &lg_fssinfo_fsm); result = (fspace == f->shared->fs_man[sm_fshdr_fsm]) || (fspace == f->shared->fs_man[sm_fssinfo_fsm]) || @@ -3609,8 +3622,8 @@ H5MF_tidy_self_referential_fsm_hack(H5F_t *f) * this -- we can use the regular I/O methods even if * paged aggregation and page buffering is enabled. */ - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, (size_t)1, &sm_fshdr_fs_type); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, (size_t)1, &sm_fssinfo_fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, (size_t)1, &sm_fshdr_fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, (size_t)1, &sm_fssinfo_fs_type); HDassert(sm_fshdr_fs_type > H5F_MEM_PAGE_DEFAULT); HDassert(sm_fshdr_fs_type < H5F_MEM_PAGE_LARGE_SUPER); @@ -3648,8 +3661,8 @@ H5MF_tidy_self_referential_fsm_hack(H5F_t *f) } /* end if */ if(H5F_PAGED_AGGR(f)) { - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, f->shared->fs_page_size + 1, &lg_fshdr_fs_type); - H5MF_alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, f->shared->fs_page_size + 1, &lg_fssinfo_fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_HDR, f->shared->fs_page_size + 1, &lg_fshdr_fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_FSPACE_SINFO, f->shared->fs_page_size + 1, &lg_fssinfo_fs_type); HDassert(lg_fshdr_fs_type >= H5F_MEM_PAGE_LARGE_SUPER); HDassert(lg_fshdr_fs_type < H5F_MEM_PAGE_NTYPES); diff --git a/src/H5MFaggr.c b/src/H5MFaggr.c index cd80a10..5ab1834 100644 --- a/src/H5MFaggr.c +++ b/src/H5MFaggr.c @@ -59,6 +59,8 @@ static herr_t H5MF__aggr_free(H5F_t *f, H5FD_mem_t type, H5F_blk_aggr_t *aggr); static haddr_t H5MF__aggr_alloc(H5F_t *f, H5F_blk_aggr_t *aggr, H5F_blk_aggr_t *other_aggr, H5FD_mem_t type, hsize_t size); +static herr_t H5MF__aggr_reset(H5F_t *f, H5F_blk_aggr_t *aggr); +static htri_t H5MF__aggr_can_shrink_eoa(H5F_t *f, H5FD_mem_t type, H5F_blk_aggr_t *aggr); /*********************/ @@ -179,7 +181,7 @@ HDfprintf(stderr, "%s: type = %u, size = %Hu\n", FUNC, (unsigned)type, size); /* * If the aggregation feature is enabled for this file and strategy is not H5F_FILE_SPACE_NONE, * allocate "generic" space and sub-allocate out of that, if possible. - * Otherwise just allocate through H5F_alloc(). + * Otherwise just allocate through H5F__alloc(). */ if((f->shared->feature_flags & aggr->feature_flag) && f->shared->fs_strategy != H5F_FSPACE_STRATEGY_NONE) { haddr_t aggr_frag_addr = HADDR_UNDEF; /* Address of aggregrator fragment */ @@ -193,18 +195,18 @@ HDfprintf(stderr, "%s: aggr = {%a, %Hu, %Hu}\n", FUNC, aggr->addr, aggr->tot_siz #endif /* H5MF_AGGR_DEBUG */ /* Turn off alignment if allocation < threshold */ - alignment = H5F_ALIGNMENT(f); - if(!((alignment > 1) && (size >= H5F_THRESHOLD(f)))) - alignment = 0; /* no alignment */ + alignment = H5F_ALIGNMENT(f); + if(!((alignment > 1) && (size >= H5F_THRESHOLD(f)))) + alignment = 0; /* no alignment */ /* Generate fragment if aggregator is mis-aligned */ - if(alignment && H5F_addr_gt(aggr->addr, 0) && (aggr_mis_align = (aggr->addr + H5F_BASE_ADDR(f)) % alignment)) { - aggr_frag_addr = aggr->addr; - aggr_frag_size = alignment - aggr_mis_align; - } /* end if */ + if(alignment && H5F_addr_gt(aggr->addr, 0) && (aggr_mis_align = (aggr->addr + H5F_BASE_ADDR(f)) % alignment)) { + aggr_frag_addr = aggr->addr; + aggr_frag_size = alignment - aggr_mis_align; + } /* end if */ - alloc_type = aggr->feature_flag == H5FD_FEAT_AGGREGATE_METADATA ? H5FD_MEM_DEFAULT : H5FD_MEM_DRAW; - other_alloc_type = other_aggr->feature_flag == H5FD_FEAT_AGGREGATE_METADATA ? H5FD_MEM_DEFAULT : H5FD_MEM_DRAW; + alloc_type = aggr->feature_flag == H5FD_FEAT_AGGREGATE_METADATA ? H5FD_MEM_DEFAULT : H5FD_MEM_DRAW; + other_alloc_type = other_aggr->feature_flag == H5FD_FEAT_AGGREGATE_METADATA ? H5FD_MEM_DEFAULT : H5FD_MEM_DRAW; /* Check if the space requested is larger than the space left in the block */ if((size + aggr_frag_size) > aggr->size) { @@ -212,73 +214,74 @@ HDfprintf(stderr, "%s: aggr = {%a, %Hu, %Hu}\n", FUNC, aggr->addr, aggr->tot_siz /* Check if the block asked for is too large for 'normal' aggregator block */ if(size >= aggr->alloc_size) { - hsize_t ext_size = size + aggr_frag_size; + hsize_t ext_size = size + aggr_frag_size; /* Check for overlapping into file's temporary allocation space */ if(H5F_addr_gt((aggr->addr + aggr->size + ext_size), f->shared->tmp_addr)) HGOTO_ERROR(H5E_RESOURCE, H5E_BADRANGE, HADDR_UNDEF, "'normal' file space allocation request will overlap into 'temporary' file space") - if((aggr->addr > 0) && (extended = H5F__try_extend(f, alloc_type, (aggr->addr + aggr->size), ext_size)) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't extending space") - else if (extended) { - /* aggr->size is unchanged */ - ret_value = aggr->addr + aggr_frag_size; - aggr->addr += ext_size; - aggr->tot_size += ext_size; - } else { + if((aggr->addr > 0) && (extended = H5F__try_extend(f, alloc_type, (aggr->addr + aggr->size), ext_size)) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't extending space") + else if(extended) { + /* aggr->size is unchanged */ + ret_value = aggr->addr + aggr_frag_size; + aggr->addr += ext_size; + aggr->tot_size += ext_size; + } + else { /* Release "other" aggregator, if it exists, is at the end of the allocated space, * has allocated more than one block and the unallocated space is greater than its * allocation block size. */ - if((other_aggr->size > 0) && (H5F_addr_eq((other_aggr->addr + other_aggr->size), eoa)) && - (other_aggr->tot_size > other_aggr->size) && ((other_aggr->tot_size - other_aggr->size) >= other_aggr->alloc_size)) { + if((other_aggr->size > 0) && (H5F_addr_eq((other_aggr->addr + other_aggr->size), eoa)) && + (other_aggr->tot_size > other_aggr->size) && ((other_aggr->tot_size - other_aggr->size) >= other_aggr->alloc_size)) { if(H5MF__aggr_free(f, other_alloc_type, other_aggr) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation block") - } /* end if */ + } /* end if */ /* Allocate space from the VFD (i.e. at the end of the file) */ - if(HADDR_UNDEF == (ret_value = H5F__alloc(f, alloc_type, size, &eoa_frag_addr, &eoa_frag_size))) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't allocate file space") + if(HADDR_UNDEF == (ret_value = H5F__alloc(f, alloc_type, size, &eoa_frag_addr, &eoa_frag_size))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't allocate file space") } /* end else */ } /* end if */ - else { - hsize_t ext_size = aggr->alloc_size; + else { + hsize_t ext_size = aggr->alloc_size; /* Allocate another block */ #ifdef H5MF_AGGR_DEBUG HDfprintf(stderr, "%s: Allocating block\n", FUNC); #endif /* H5MF_AGGR_DEBUG */ - if(aggr_frag_size > (ext_size - size)) - ext_size += (aggr_frag_size - (ext_size - size)); + if(aggr_frag_size > (ext_size - size)) + ext_size += (aggr_frag_size - (ext_size - size)); /* Check for overlapping into file's temporary allocation space */ if(H5F_addr_gt((aggr->addr + aggr->size + ext_size), f->shared->tmp_addr)) HGOTO_ERROR(H5E_RESOURCE, H5E_BADRANGE, HADDR_UNDEF, "'normal' file space allocation request will overlap into 'temporary' file space") - if((aggr->addr > 0) && (extended = H5F__try_extend(f, alloc_type, (aggr->addr + aggr->size), ext_size)) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't extending space") - else if(extended) { - aggr->addr += aggr_frag_size; - aggr->size += (ext_size - aggr_frag_size); - aggr->tot_size += ext_size; - } /* end else-if */ - else { + if((aggr->addr > 0) && (extended = H5F__try_extend(f, alloc_type, (aggr->addr + aggr->size), ext_size)) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't extending space") + else if(extended) { + aggr->addr += aggr_frag_size; + aggr->size += (ext_size - aggr_frag_size); + aggr->tot_size += ext_size; + } /* end else-if */ + else { haddr_t new_space; /* Address of new space allocated */ /* Release "other" aggregator, if it exists, is at the end of the allocated space, * has allocated more than one block and the unallocated space is greater than its * allocation block size. */ - if((other_aggr->size > 0) && (H5F_addr_eq((other_aggr->addr + other_aggr->size), eoa)) && - (other_aggr->tot_size > other_aggr->size) && ((other_aggr->tot_size - other_aggr->size) >= other_aggr->alloc_size)) { + if((other_aggr->size > 0) && (H5F_addr_eq((other_aggr->addr + other_aggr->size), eoa)) && + (other_aggr->tot_size > other_aggr->size) && ((other_aggr->tot_size - other_aggr->size) >= other_aggr->alloc_size)) { if(H5MF__aggr_free(f, other_alloc_type, other_aggr) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation block") - } /* end if */ + } /* end if */ /* Allocate space from the VFD (i.e. at the end of the file) */ - if(HADDR_UNDEF == (new_space = H5F__alloc(f, alloc_type, aggr->alloc_size, &eoa_frag_addr, &eoa_frag_size))) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't allocate file space") + if(HADDR_UNDEF == (new_space = H5F__alloc(f, alloc_type, aggr->alloc_size, &eoa_frag_addr, &eoa_frag_size))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't allocate file space") /* Return the unused portion of the block to a free list */ if(aggr->size > 0) @@ -307,32 +310,32 @@ HDfprintf(stderr, "%s: Allocating block\n", FUNC); } /* end else */ } /* end else */ - /* Allocate space out of the metadata block */ - ret_value = aggr->addr; - aggr->size -= size; - aggr->addr += size; + /* Allocate space out of the metadata block */ + ret_value = aggr->addr; + aggr->size -= size; + aggr->addr += size; } /* end else */ - /* Freeing any possible fragment due to file allocation */ - if(eoa_frag_size) - if(H5MF_xfree(f, alloc_type, eoa_frag_addr, eoa_frag_size) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free eoa fragment") + /* Freeing any possible fragment due to file allocation */ + if(eoa_frag_size) + if(H5MF_xfree(f, alloc_type, eoa_frag_addr, eoa_frag_size) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free eoa fragment") - /* Freeing any possible fragment due to alignment in the block after extension */ + /* Freeing any possible fragment due to alignment in the block after extension */ if(extended && aggr_frag_size) - if(H5MF_xfree(f, alloc_type, aggr_frag_addr, aggr_frag_size) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation fragment") + if(H5MF_xfree(f, alloc_type, aggr_frag_addr, aggr_frag_size) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation fragment") } /* end if */ else { /* Allocate space out of the block */ - ret_value = aggr->addr + aggr_frag_size; - aggr->size -= (size + aggr_frag_size); - aggr->addr += (size + aggr_frag_size); - - /* free any possible fragment */ - if(aggr_frag_size) - if(H5MF_xfree(f, alloc_type, aggr_frag_addr, aggr_frag_size) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation fragment") + ret_value = aggr->addr + aggr_frag_size; + aggr->size -= (size + aggr_frag_size); + aggr->addr += (size + aggr_frag_size); + + /* free any possible fragment */ + if(aggr_frag_size) + if(H5MF_xfree(f, alloc_type, aggr_frag_addr, aggr_frag_size) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation fragment") } /* end else */ } /* end if */ else { @@ -341,10 +344,10 @@ HDfprintf(stderr, "%s: Allocating block\n", FUNC); HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't allocate file space") /* Check if fragment was generated */ - if(eoa_frag_size) + if(eoa_frag_size) /* Put fragment on the free list */ - if(H5MF_xfree(f, type, eoa_frag_addr, eoa_frag_size) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free eoa fragment") + if(H5MF_xfree(f, type, eoa_frag_addr, eoa_frag_size) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free eoa fragment") } /* end else */ /* Sanity check for overlapping into file's temporary allocation space */ @@ -403,53 +406,53 @@ H5MF__aggr_try_extend(H5F_t *f, H5F_blk_aggr_t *aggr, /* Check if this aggregator is active */ if(f->shared->feature_flags & aggr->feature_flag) { /* - * If the block being tested adjoins the beginning of the aggregator + * If the block being tested adjoins the beginning of the aggregator * block, check if the aggregator can accomodate the extension. */ if(H5F_addr_eq(blk_end, aggr->addr)) { - haddr_t eoa; /* EOA for the file */ - - /* Get the EOA for the file */ - if(HADDR_UNDEF == (eoa = H5F_get_eoa(f, type))) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "Unable to get eoa") - - /* If the aggregator is at the end of file: */ - if(H5F_addr_eq(eoa, aggr->addr + aggr->size)) { - /* If extra_requested is below percentage threshold, extend block into the aggregator. */ - if(extra_requested <= (hsize_t)(EXTEND_THRESHOLD * (float)aggr->size)) { - aggr->size -= extra_requested; - aggr->addr += extra_requested; - - /* Indicate success */ - HGOTO_DONE(TRUE); - } /* end if */ - /* - * If extra_requested is above percentage threshold: - * 1) "bubble" up the aggregator by aggr->alloc_size or extra_requested - * 2) extend the block into the aggregator - */ - else { - hsize_t extra = (extra_requested < aggr->alloc_size) ? aggr->alloc_size : extra_requested; + haddr_t eoa; /* EOA for the file */ + + /* Get the EOA for the file */ + if(HADDR_UNDEF == (eoa = H5F_get_eoa(f, type))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "Unable to get eoa") + + /* If the aggregator is at the end of file: */ + if(H5F_addr_eq(eoa, aggr->addr + aggr->size)) { + /* If extra_requested is below percentage threshold, extend block into the aggregator. */ + if(extra_requested <= (hsize_t)(EXTEND_THRESHOLD * (float)aggr->size)) { + aggr->size -= extra_requested; + aggr->addr += extra_requested; + + /* Indicate success */ + HGOTO_DONE(TRUE); + } /* end if */ + /* + * If extra_requested is above percentage threshold: + * 1) "bubble" up the aggregator by aggr->alloc_size or extra_requested + * 2) extend the block into the aggregator + */ + else { + hsize_t extra = (extra_requested < aggr->alloc_size) ? aggr->alloc_size : extra_requested; if((ret_value = H5F__try_extend(f, type, (aggr->addr + aggr->size), extra)) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTEXTEND, FAIL, "error extending file") - else if(ret_value == TRUE) { - /* Shift the aggregator block by the extra requested */ + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTEXTEND, FAIL, "error extending file") + else if(ret_value == TRUE) { + /* Shift the aggregator block by the extra requested */ /* (allocates the space for the extra_requested) */ - aggr->addr += extra_requested; + aggr->addr += extra_requested; - /* Add extra to the aggregator's total allocated amount */ - aggr->tot_size += extra; + /* Add extra to the aggregator's total allocated amount */ + aggr->tot_size += extra; /* Account for any space added to the aggregator */ /* (either 0 (if extra_requested > aggr->alloc_size) or * (aggr->alloc_size - extra_requested) -QAK */ - aggr->size += extra; - aggr->size -= extra_requested; - } /* end else-if */ - } /* end else */ - } /* end if */ + aggr->size += extra; + aggr->size -= extra_requested; + } /* end else-if */ + } /* end else */ + } /* end if */ else { /* The aggreator is not at end of file */ /* Check if aggregator has enough internal space to satisfy the extension. */ @@ -461,8 +464,8 @@ H5MF__aggr_try_extend(H5F_t *f, H5F_blk_aggr_t *aggr, /* Indicate success */ HGOTO_DONE(TRUE); } /* end if */ - } /* end else */ - } /* end if */ + } /* end else */ + } /* end if */ } /* end if */ done: @@ -471,7 +474,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5MF_aggr_can_absorb + * Function: H5MF__aggr_can_absorb * * Purpose: Check if a section adjoins an aggregator block and one can * absorb the other. @@ -486,12 +489,12 @@ done: *------------------------------------------------------------------------- */ htri_t -H5MF_aggr_can_absorb(const H5F_t *f, const H5F_blk_aggr_t *aggr, +H5MF__aggr_can_absorb(const H5F_t *f, const H5F_blk_aggr_t *aggr, const H5MF_free_section_t *sect, H5MF_shrink_type_t *shrink) { htri_t ret_value = FALSE; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_PACKAGE_NOERR /* Check args */ HDassert(f); @@ -506,7 +509,7 @@ H5MF_aggr_can_absorb(const H5F_t *f, const H5F_blk_aggr_t *aggr, if(H5F_addr_eq((sect->sect_info.addr + sect->sect_info.size), aggr->addr) || H5F_addr_eq((aggr->addr + aggr->size), sect->sect_info.addr)) { #ifdef H5MF_AGGR_DEBUG -HDfprintf(stderr, "%s: section {%a, %Hu} adjoins aggr = {%a, %Hu}\n", "H5MF_aggr_can_absorb", sect->sect_info.addr, sect->sect_info.size, aggr->addr, aggr->size); +HDfprintf(stderr, "%s: section {%a, %Hu} adjoins aggr = {%a, %Hu}\n", "H5MF__aggr_can_absorb", sect->sect_info.addr, sect->sect_info.size, aggr->addr, aggr->size); #endif /* H5MF_AGGR_DEBUG */ /* Check if aggregator would get too large and should be absorbed into section */ if((aggr->size + sect->sect_info.size) >= aggr->alloc_size) @@ -521,11 +524,11 @@ HDfprintf(stderr, "%s: section {%a, %Hu} adjoins aggr = {%a, %Hu}\n", "H5MF_aggr done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5MF_aggr_can_absorb() */ +} /* end H5MF__aggr_can_absorb() */ /*------------------------------------------------------------------------- - * Function: H5MF_aggr_absorb + * Function: H5MF__aggr_absorb * * Purpose: Absorb a free space section into an aggregator block or * vice versa. @@ -539,10 +542,10 @@ done: *------------------------------------------------------------------------- */ herr_t -H5MF_aggr_absorb(const H5F_t H5_ATTR_UNUSED *f, H5F_blk_aggr_t *aggr, H5MF_free_section_t *sect, +H5MF__aggr_absorb(const H5F_t H5_ATTR_UNUSED *f, H5F_blk_aggr_t *aggr, H5MF_free_section_t *sect, hbool_t allow_sect_absorb) { - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_PACKAGE_NOERR /* Check args */ HDassert(f); @@ -556,7 +559,7 @@ H5MF_aggr_absorb(const H5F_t H5_ATTR_UNUSED *f, H5F_blk_aggr_t *aggr, H5MF_free_ /* Check if the section adjoins the beginning or end of the aggregator */ if(H5F_addr_eq((sect->sect_info.addr + sect->sect_info.size), aggr->addr)) { #ifdef H5MF_AGGR_DEBUG -HDfprintf(stderr, "%s: aggr {%a, %Hu} adjoins front of section = {%a, %Hu}\n", "H5MF_aggr_absorb", aggr->addr, aggr->size, sect->sect_info.addr, sect->sect_info.size); +HDfprintf(stderr, "%s: aggr {%a, %Hu} adjoins front of section = {%a, %Hu}\n", "H5MF__aggr_absorb", aggr->addr, aggr->size, sect->sect_info.addr, sect->sect_info.size); #endif /* H5MF_AGGR_DEBUG */ /* Absorb aggregator onto end of section */ sect->sect_info.size += aggr->size; @@ -566,7 +569,7 @@ HDfprintf(stderr, "%s: aggr {%a, %Hu} adjoins front of section = {%a, %Hu}\n", " HDassert(H5F_addr_eq((aggr->addr + aggr->size), sect->sect_info.addr)); #ifdef H5MF_AGGR_DEBUG -HDfprintf(stderr, "%s: aggr {%a, %Hu} adjoins end of section = {%a, %Hu}\n", "H5MF_aggr_absorb", aggr->addr, aggr->size, sect->sect_info.addr, sect->sect_info.size); +HDfprintf(stderr, "%s: aggr {%a, %Hu} adjoins end of section = {%a, %Hu}\n", "H5MF__aggr_absorb", aggr->addr, aggr->size, sect->sect_info.addr, sect->sect_info.size); #endif /* H5MF_AGGR_DEBUG */ /* Absorb aggregator onto beginning of section */ sect->sect_info.addr -= aggr->size; @@ -582,7 +585,7 @@ HDfprintf(stderr, "%s: aggr {%a, %Hu} adjoins end of section = {%a, %Hu}\n", "H5 /* Check if the section adjoins the beginning or end of the aggregator */ if(H5F_addr_eq((sect->sect_info.addr + sect->sect_info.size), aggr->addr)) { #ifdef H5MF_AGGR_DEBUG -HDfprintf(stderr, "%s: section {%a, %Hu} adjoins front of aggr = {%a, %Hu}\n", "H5MF_aggr_absorb", sect->sect_info.addr, sect->sect_info.size, aggr->addr, aggr->size); +HDfprintf(stderr, "%s: section {%a, %Hu} adjoins front of aggr = {%a, %Hu}\n", "H5MF__aggr_absorb", sect->sect_info.addr, sect->sect_info.size, aggr->addr, aggr->size); #endif /* H5MF_AGGR_DEBUG */ /* Absorb section onto front of aggregator */ aggr->addr -= sect->sect_info.size; @@ -598,7 +601,7 @@ HDfprintf(stderr, "%s: section {%a, %Hu} adjoins front of aggr = {%a, %Hu}\n", " HDassert(H5F_addr_eq((aggr->addr + aggr->size), sect->sect_info.addr)); #ifdef H5MF_AGGR_DEBUG -HDfprintf(stderr, "%s: section {%a, %Hu} adjoins end of aggr = {%a, %Hu}\n", "H5MF_aggr_absorb", sect->sect_info.addr, sect->sect_info.size, aggr->addr, aggr->size); +HDfprintf(stderr, "%s: section {%a, %Hu} adjoins end of aggr = {%a, %Hu}\n", "H5MF__aggr_absorb", sect->sect_info.addr, sect->sect_info.size, aggr->addr, aggr->size); #endif /* H5MF_AGGR_DEBUG */ /* Absorb section onto end of aggregator */ aggr->size += sect->sect_info.size; @@ -608,11 +611,11 @@ HDfprintf(stderr, "%s: section {%a, %Hu} adjoins end of aggr = {%a, %Hu}\n", "H5 } /* end else */ FUNC_LEAVE_NOAPI(SUCCEED) -} /* end H5MF_aggr_absorb() */ +} /* end H5MF__aggr_absorb() */ /*------------------------------------------------------------------------- - * Function: H5MF_aggr_query + * Function: H5MF__aggr_query * * Purpose: Query a block aggregator's current address & size info * @@ -625,10 +628,10 @@ HDfprintf(stderr, "%s: section {%a, %Hu} adjoins end of aggr = {%a, %Hu}\n", "H5 *------------------------------------------------------------------------- */ herr_t -H5MF_aggr_query(const H5F_t *f, const H5F_blk_aggr_t *aggr, haddr_t *addr, +H5MF__aggr_query(const H5F_t *f, const H5F_blk_aggr_t *aggr, haddr_t *addr, hsize_t *size) { - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_PACKAGE_NOERR /* Check args */ HDassert(f); @@ -644,7 +647,7 @@ H5MF_aggr_query(const H5F_t *f, const H5F_blk_aggr_t *aggr, haddr_t *addr, } /* end if */ FUNC_LEAVE_NOAPI(SUCCEED) -} /* end H5MF_aggr_query() */ +} /* end H5MF__aggr_query() */ /*------------------------------------------------------------------------- @@ -737,11 +740,11 @@ H5MF_free_aggrs(H5F_t *f) HDassert(f->shared->lf); /* Retrieve metadata aggregator info, if available */ - if(H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size) < 0) + if(H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query metadata aggregator stats") /* Retrieve 'small data' aggregator info, if available */ - if(H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sda_addr, &sda_size) < 0) + if(H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sda_addr, &sda_size) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query small data aggregator stats") /* Make certain we release the aggregator that's later in the file first */ @@ -774,7 +777,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5MF_aggr_can_shrink_eoa + * Function: H5MF__aggr_can_shrink_eoa * * Purpose: Check if the remaining space in the aggregator is at EOA * @@ -786,12 +789,12 @@ done: *------------------------------------------------------------------------- */ static htri_t -H5MF_aggr_can_shrink_eoa(H5F_t *f, H5FD_mem_t type, H5F_blk_aggr_t *aggr) +H5MF__aggr_can_shrink_eoa(H5F_t *f, H5FD_mem_t type, H5F_blk_aggr_t *aggr) { haddr_t eoa = HADDR_UNDEF; /* EOA for the file */ htri_t ret_value = FALSE; /* Return value */ - FUNC_ENTER_NOAPI(FAIL) + FUNC_ENTER_STATIC /* Sanity check */ HDassert(f); @@ -808,7 +811,7 @@ H5MF_aggr_can_shrink_eoa(H5F_t *f, H5FD_mem_t type, H5F_blk_aggr_t *aggr) done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_aggr_can_shrink_eoa() */ +} /* H5MF__aggr_can_shrink_eoa() */ /*------------------------------------------------------------------------- @@ -882,17 +885,17 @@ H5MF_aggrs_try_shrink_eoa(H5F_t *f) HDassert(f); HDassert(f->shared); - if((ma_status = H5MF_aggr_can_shrink_eoa(f, H5FD_MEM_DEFAULT, &(f->shared->meta_aggr))) < 0) + if((ma_status = H5MF__aggr_can_shrink_eoa(f, H5FD_MEM_DEFAULT, &(f->shared->meta_aggr))) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query metadata aggregator stats") if(ma_status > 0) - if(H5MF__aggr_free(f, H5FD_MEM_DEFAULT, &(f->shared->meta_aggr)) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTSHRINK, FAIL, "can't check for shrinking eoa") + if(H5MF__aggr_free(f, H5FD_MEM_DEFAULT, &(f->shared->meta_aggr)) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTSHRINK, FAIL, "can't check for shrinking eoa") - if((sda_status = H5MF_aggr_can_shrink_eoa(f, H5FD_MEM_DRAW, &(f->shared->sdata_aggr))) < 0) + if((sda_status = H5MF__aggr_can_shrink_eoa(f, H5FD_MEM_DRAW, &(f->shared->sdata_aggr))) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query small data aggregator stats") if(sda_status > 0) - if(H5MF__aggr_free(f, H5FD_MEM_DRAW, &(f->shared->sdata_aggr)) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTSHRINK, FAIL, "can't check for shrinking eoa") + if(H5MF__aggr_free(f, H5FD_MEM_DRAW, &(f->shared->sdata_aggr)) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTSHRINK, FAIL, "can't check for shrinking eoa") ret_value = (ma_status || sda_status); diff --git a/src/H5MFdbg.c b/src/H5MFdbg.c index 592ca87..eedb72e 100644 --- a/src/H5MFdbg.c +++ b/src/H5MFdbg.c @@ -67,6 +67,7 @@ typedef struct { /* Local Prototypes */ /********************/ +static herr_t H5MF__sects_debug_cb(H5FS_section_info_t *_sect, void *_udata); /*********************/ /* Package Variables */ @@ -84,7 +85,7 @@ typedef struct { /*------------------------------------------------------------------------- - * Function: H5MF_sects_debug_cb + * Function: H5MF__sects_debug_cb * * Purpose: Prints debugging info about a free space section for a file * @@ -97,13 +98,13 @@ typedef struct { *------------------------------------------------------------------------- */ static herr_t -H5MF_sects_debug_cb(H5FS_section_info_t *_sect, void *_udata) +H5MF__sects_debug_cb(H5FS_section_info_t *_sect, void *_udata) { H5MF_free_section_t *sect = (H5MF_free_section_t *)_sect; /* Section to dump info */ H5MF_debug_iter_ud_t *udata = (H5MF_debug_iter_ud_t *)_udata; /* User data for callbacks */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* * Check arguments. @@ -136,7 +137,7 @@ H5MF_sects_debug_cb(H5FS_section_info_t *_sect, void *_udata) done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5MF_sects_debug_cb() */ +} /* end H5MF__sects_debug_cb() */ /*------------------------------------------------------------------------- @@ -184,7 +185,7 @@ H5MF_sects_debug(H5F_t *f, haddr_t fs_addr, FILE *stream, int indent, int fwidth udata.fwidth = fwidth; /* Iterate over all the free space sections */ - if(H5FS_sect_iterate(f, f->shared->fs_man[type], H5MF_sects_debug_cb, &udata) < 0) + if(H5FS_sect_iterate(f, f->shared->fs_man[type], H5MF__sects_debug_cb, &udata) < 0) HGOTO_ERROR(H5E_HEAP, H5E_BADITER, FAIL, "can't iterate over heap's free space") /* Close the free space information */ @@ -201,7 +202,7 @@ done: #ifdef H5MF_ALLOC_DEBUG_DUMP /*------------------------------------------------------------------------- - * Function: H5MF_sects_dump + * Function: H5MF__sects_dump * * Purpose: Prints debugging info about free space sections for a file. * @@ -221,7 +222,7 @@ H5MF_sects_dump(H5F_t *f, FILE *stream) int fwidth = 50; /* Field width */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_TAG(H5AC__FREESPACE_TAG, FAIL) + FUNC_ENTER_PACKAGE_TAG(H5AC__FREESPACE_TAG, FAIL) #ifdef H5MF_ALLOC_DEBUG HDfprintf(stderr, "%s: Dumping file free space sections\n", FUNC); #endif /* H5MF_ALLOC_DEBUG */ @@ -234,7 +235,7 @@ HDfprintf(stderr, "%s: Dumping file free space sections\n", FUNC); /* Retrieve the 'eoa' for the file */ if(HADDR_UNDEF == (eoa = H5F_get_eoa(f, H5FD_MEM_DEFAULT))) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "driver get_eoa request failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "driver get_eoa request failed") #ifdef H5MF_ALLOC_DEBUG HDfprintf(stderr, "%s: for type = H5FD_MEM_DEFAULT, eoa = %a\n", FUNC, eoa); #endif /* H5MF_ALLOC_DEBUG */ @@ -276,13 +277,13 @@ HDfprintf(stderr, "%s: for type = H5FD_MEM_DEFAULT, eoa = %a\n", FUNC, eoa); hsize_t sda_size = 0; /* Size of "small data aggregator" */ /* Retrieve metadata aggregator info, if available */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); #ifdef H5MF_ALLOC_DEBUG HDfprintf(stderr, "%s: ma_addr = %a, ma_size = %Hu, end of ma = %a\n", FUNC, ma_addr, ma_size, (haddr_t)((ma_addr + ma_size) - 1)); #endif /* H5MF_ALLOC_DEBUG */ /* Retrieve 'small data' aggregator info, if available */ - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sda_addr, &sda_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sda_addr, &sda_size); #ifdef H5MF_ALLOC_DEBUG HDfprintf(stderr, "%s: sda_addr = %a, sda_size = %Hu, end of sda = %a\n", FUNC, sda_addr, sda_size, (haddr_t)((sda_addr + sda_size) - 1)); #endif /* H5MF_ALLOC_DEBUG */ @@ -303,7 +304,7 @@ HDfprintf(stderr, "%s: sda_addr = %a, sda_size = %Hu, end of sda = %a\n", FUNC, HDfprintf(stream, "%*sSections:\n", indent + 3, ""); /* If there is a free space manager for this type, iterate over them */ - if(f->shared->fs.aggr.fs_man[atype]) { + if(f->shared->fs_man[atype]) { H5MF_debug_iter_ud_t udata; /* User data for callbacks */ /* Prepare user data for section iteration callback */ @@ -327,6 +328,6 @@ HDfprintf(stderr, "%s: sda_addr = %a, sda_size = %Hu, end of sda = %a\n", FUNC, done: HDfprintf(stderr, "%s: Done dumping file free space sections\n", FUNC); FUNC_LEAVE_NOAPI_TAG(ret_value) -} /* end H5MF_sects_dump() */ +} /* end H5MF__sects_dump() */ #endif /* H5MF_ALLOC_DEBUG_DUMP */ diff --git a/src/H5MFpkg.h b/src/H5MFpkg.h index fbf9ee8..ec4aab4 100644 --- a/src/H5MFpkg.h +++ b/src/H5MFpkg.h @@ -12,12 +12,12 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> - * Tuesday, January 8, 2008 + * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Tuesday, January 8, 2008 * - * Purpose: This file contains declarations which are visible only within - * the H5MF package. Source files outside the H5MF package should - * include H5MFprivate.h instead. + * Purpose: This file contains declarations which are visible only within + * the H5MF package. Source files outside the H5MF package should + * include H5MFprivate.h instead. */ #if !(defined H5MF_FRIEND || defined H5MF_MODULE) #error "Do not include this file outside the H5MF package!" @@ -186,24 +186,24 @@ H5_DLL herr_t H5MF__start_fstype(H5F_t *f, H5F_mem_page_t type); H5_DLL htri_t H5MF__find_sect(H5F_t *f, H5FD_mem_t alloc_type, hsize_t size, H5FS_t *fspace, haddr_t *addr); H5_DLL herr_t H5MF__add_sect(H5F_t *f, H5FD_mem_t alloc_type, H5FS_t *fspace, H5MF_free_section_t *node); -H5_DLL herr_t H5MF_sects_dump(H5F_t *f, FILE *stream); +H5_DLL herr_t H5MF__sects_dump(H5F_t *f, FILE *stream); -H5_DLL void H5MF_alloc_to_fs_type(H5F_t *f, H5FD_mem_t alloc_type, hsize_t size, H5F_mem_page_t *fs_type); +H5_DLL void H5MF__alloc_to_fs_type(H5F_t *f, H5FD_mem_t alloc_type, hsize_t size, H5F_mem_page_t *fs_type); /* 'simple/small/large' section routines */ -H5_DLL H5MF_free_section_t *H5MF_sect_new(unsigned ctype, haddr_t sect_off, +H5_DLL H5MF_free_section_t *H5MF__sect_new(unsigned ctype, haddr_t sect_off, hsize_t sect_size); -H5_DLL herr_t H5MF_sect_free(H5FS_section_info_t *sect); +H5_DLL herr_t H5MF__sect_free(H5FS_section_info_t *sect); /* Block aggregator routines */ H5_DLL htri_t H5MF__aggr_try_extend(H5F_t *f, H5F_blk_aggr_t *aggr, H5FD_mem_t type, haddr_t abs_blk_end, hsize_t extra_requested); -H5_DLL htri_t H5MF_aggr_can_absorb(const H5F_t *f, const H5F_blk_aggr_t *aggr, +H5_DLL htri_t H5MF__aggr_can_absorb(const H5F_t *f, const H5F_blk_aggr_t *aggr, const H5MF_free_section_t *sect, H5MF_shrink_type_t *shrink); -H5_DLL herr_t H5MF_aggr_absorb(const H5F_t *f, H5F_blk_aggr_t *aggr, +H5_DLL herr_t H5MF__aggr_absorb(const H5F_t *f, H5F_blk_aggr_t *aggr, H5MF_free_section_t *sect, hbool_t allow_sect_absorb); -H5_DLL herr_t H5MF_aggr_query(const H5F_t *f, const H5F_blk_aggr_t *aggr, +H5_DLL herr_t H5MF__aggr_query(const H5F_t *f, const H5F_blk_aggr_t *aggr, haddr_t *addr, hsize_t *size); /* Testing routines */ diff --git a/src/H5MFsection.c b/src/H5MFsection.c index fe140a7..3ebc5c8 100644 --- a/src/H5MFsection.c +++ b/src/H5MFsection.c @@ -56,44 +56,40 @@ /********************/ /* 'simple/small/large' section callbacks */ -static H5FS_section_info_t *H5MF_sect_deserialize(const H5FS_section_class_t *cls, +static H5FS_section_info_t *H5MF__sect_deserialize(const H5FS_section_class_t *cls, const uint8_t *buf, haddr_t sect_addr, hsize_t sect_size, unsigned *des_flags); -static herr_t H5MF_sect_valid(const H5FS_section_class_t *cls, +static herr_t H5MF__sect_valid(const H5FS_section_class_t *cls, const H5FS_section_info_t *sect); -static H5FS_section_info_t *H5MF_sect_split(H5FS_section_info_t *sect, +static H5FS_section_info_t *H5MF__sect_split(H5FS_section_info_t *sect, hsize_t frag_size); /* 'simple' section callbacks */ -static htri_t H5MF_sect_simple_can_merge(const H5FS_section_info_t *sect1, +static htri_t H5MF__sect_simple_can_merge(const H5FS_section_info_t *sect1, const H5FS_section_info_t *sect2, void *udata); -static herr_t H5MF_sect_simple_merge(H5FS_section_info_t **sect1, +static herr_t H5MF__sect_simple_merge(H5FS_section_info_t **sect1, H5FS_section_info_t *sect2, void *udata); -static htri_t H5MF_sect_simple_can_shrink(const H5FS_section_info_t *_sect, +static htri_t H5MF__sect_simple_can_shrink(const H5FS_section_info_t *_sect, void *udata); -static herr_t H5MF_sect_simple_shrink(H5FS_section_info_t **_sect, +static herr_t H5MF__sect_simple_shrink(H5FS_section_info_t **_sect, void *udata); /* 'small' section callbacks */ -static herr_t H5MF_sect_small_add(H5FS_section_info_t **_sect, unsigned *flags, void *_udata); -static htri_t H5MF_sect_small_can_merge(const H5FS_section_info_t *sect1, +static herr_t H5MF__sect_small_add(H5FS_section_info_t **_sect, unsigned *flags, void *_udata); +static htri_t H5MF__sect_small_can_merge(const H5FS_section_info_t *sect1, const H5FS_section_info_t *sect2, void *udata); -static herr_t H5MF_sect_small_merge(H5FS_section_info_t **sect1, +static herr_t H5MF__sect_small_merge(H5FS_section_info_t **sect1, H5FS_section_info_t *sect2, void *udata); -static htri_t H5MF_sect_small_can_shrink(const H5FS_section_info_t *_sect, - void *udata); -static herr_t H5MF_sect_small_shrink(H5FS_section_info_t **_sect, - void *udata); /* 'large' section callbacks */ -static htri_t H5MF_sect_large_can_merge(const H5FS_section_info_t *sect1, +static htri_t H5MF__sect_large_can_merge(const H5FS_section_info_t *sect1, const H5FS_section_info_t *sect2, void *udata); -static herr_t H5MF_sect_large_merge(H5FS_section_info_t **sect1, +static herr_t H5MF__sect_large_merge(H5FS_section_info_t **sect1, H5FS_section_info_t *sect2, void *udata); -static htri_t H5MF_sect_large_can_shrink(const H5FS_section_info_t *_sect, +static htri_t H5MF__sect_large_can_shrink(const H5FS_section_info_t *_sect, void *udata); -static herr_t H5MF_sect_large_shrink(H5FS_section_info_t **_sect, +static herr_t H5MF__sect_large_shrink(H5FS_section_info_t **_sect, void *udata); /*********************/ @@ -115,14 +111,14 @@ H5FS_section_class_t H5MF_FSPACE_SECT_CLS_SIMPLE[1] = {{ /* Object methods */ NULL, /* Add section */ NULL, /* Serialize section */ - H5MF_sect_deserialize, /* Deserialize section */ - H5MF_sect_simple_can_merge, /* Can sections merge? */ - H5MF_sect_simple_merge, /* Merge sections */ - H5MF_sect_simple_can_shrink, /* Can section shrink container?*/ - H5MF_sect_simple_shrink, /* Shrink container w/section */ - H5MF_sect_free, /* Free section */ - H5MF_sect_valid, /* Check validity of section */ - H5MF_sect_split, /* Split section node for alignment */ + H5MF__sect_deserialize, /* Deserialize section */ + H5MF__sect_simple_can_merge, /* Can sections merge? */ + H5MF__sect_simple_merge, /* Merge sections */ + H5MF__sect_simple_can_shrink, /* Can section shrink container?*/ + H5MF__sect_simple_shrink, /* Shrink container w/section */ + H5MF__sect_free, /* Free section */ + H5MF__sect_valid, /* Check validity of section */ + H5MF__sect_split, /* Split section node for alignment */ NULL, /* Dump debugging for section */ }}; @@ -139,16 +135,16 @@ H5FS_section_class_t H5MF_FSPACE_SECT_CLS_SMALL[1] = {{ NULL, /* Terminate section class */ /* Object methods */ - H5MF_sect_small_add, /* Add section */ + H5MF__sect_small_add, /* Add section */ NULL, /* Serialize section */ - H5MF_sect_deserialize, /* Deserialize section */ - H5MF_sect_small_can_merge, /* Can sections merge? */ - H5MF_sect_small_merge, /* Merge sections */ - NULL, /* Can section shrink container?*/ - NULL, /* Shrink container w/section */ - H5MF_sect_free, /* Free section */ - H5MF_sect_valid, /* Check validity of section */ - H5MF_sect_split, /* Split section node for alignment */ + H5MF__sect_deserialize, /* Deserialize section */ + H5MF__sect_small_can_merge, /* Can sections merge? */ + H5MF__sect_small_merge, /* Merge sections */ + NULL, /* Can section shrink container?*/ + NULL, /* Shrink container w/section */ + H5MF__sect_free, /* Free section */ + H5MF__sect_valid, /* Check validity of section */ + H5MF__sect_split, /* Split section node for alignment */ NULL, /* Dump debugging for section */ }}; @@ -167,14 +163,14 @@ H5FS_section_class_t H5MF_FSPACE_SECT_CLS_LARGE[1] = {{ /* Object methods */ NULL, /* Add section */ NULL, /* Serialize section */ - H5MF_sect_deserialize, /* Deserialize section */ - H5MF_sect_large_can_merge, /* Can sections merge? */ - H5MF_sect_large_merge, /* Merge sections */ - H5MF_sect_large_can_shrink, /* Can section shrink container?*/ - H5MF_sect_large_shrink, /* Shrink container w/section */ - H5MF_sect_free, /* Free section */ - H5MF_sect_valid, /* Check validity of section */ - H5MF_sect_split, /* Split section node for alignment */ + H5MF__sect_deserialize, /* Deserialize section */ + H5MF__sect_large_can_merge, /* Can sections merge? */ + H5MF__sect_large_merge, /* Merge sections */ + H5MF__sect_large_can_shrink, /* Can section shrink container?*/ + H5MF__sect_large_shrink, /* Shrink container w/section */ + H5MF__sect_free, /* Free section */ + H5MF__sect_valid, /* Check validity of section */ + H5MF__sect_split, /* Split section node for alignment */ NULL, /* Dump debugging for section */ }}; @@ -196,7 +192,7 @@ H5FL_DEFINE(H5MF_free_section_t); /*------------------------------------------------------------------------- - * Function: H5MF_sect_new + * Function: H5MF__sect_new * * Purpose: Create a new section of "ctype" and return it to the caller * @@ -209,12 +205,12 @@ H5FL_DEFINE(H5MF_free_section_t); *------------------------------------------------------------------------- */ H5MF_free_section_t * -H5MF_sect_new(unsigned ctype, haddr_t sect_off, hsize_t sect_size) +H5MF__sect_new(unsigned ctype, haddr_t sect_off, hsize_t sect_size) { H5MF_free_section_t *sect; /* 'Simple' free space section to add */ H5MF_free_section_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_PACKAGE /* Check arguments. */ HDassert(sect_size); @@ -236,11 +232,11 @@ H5MF_sect_new(unsigned ctype, haddr_t sect_off, hsize_t sect_size) done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5MF_sect_new() */ +} /* end H5MF__sect_new() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_free + * Function: H5MF__sect_free * * Purpose: Free a 'simple/small/large' section node * @@ -253,11 +249,11 @@ done: *------------------------------------------------------------------------- */ herr_t -H5MF_sect_free(H5FS_section_info_t *_sect) +H5MF__sect_free(H5FS_section_info_t *_sect) { H5MF_free_section_t *sect = (H5MF_free_section_t *)_sect; /* File free section */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_PACKAGE_NOERR /* Check arguments. */ HDassert(sect); @@ -266,11 +262,11 @@ H5MF_sect_free(H5FS_section_info_t *_sect) sect = H5FL_FREE(H5MF_free_section_t, sect); FUNC_LEAVE_NOAPI(SUCCEED) -} /* H5MF_sect_free() */ +} /* H5MF__sect_free() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_deserialize + * Function: H5MF__sect_deserialize * * Purpose: Deserialize a buffer into a "live" section * @@ -283,14 +279,14 @@ H5MF_sect_free(H5FS_section_info_t *_sect) *------------------------------------------------------------------------- */ static H5FS_section_info_t * -H5MF_sect_deserialize(const H5FS_section_class_t *cls, +H5MF__sect_deserialize(const H5FS_section_class_t *cls, const uint8_t H5_ATTR_UNUSED *buf, haddr_t sect_addr, hsize_t sect_size, unsigned H5_ATTR_UNUSED *des_flags) { H5MF_free_section_t *sect; /* New section */ H5FS_section_info_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* Check arguments. */ HDassert(cls); @@ -298,7 +294,7 @@ H5MF_sect_deserialize(const H5FS_section_class_t *cls, HDassert(sect_size); /* Create free space section for block */ - if(NULL == (sect = H5MF_sect_new(cls->type, sect_addr, sect_size))) + if(NULL == (sect = H5MF__sect_new(cls->type, sect_addr, sect_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't initialize free space section") /* Set return value */ @@ -306,11 +302,11 @@ H5MF_sect_deserialize(const H5FS_section_class_t *cls, done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_deserialize() */ +} /* H5MF__sect_deserialize() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_valid + * Function: H5MF__sect_valid * * Purpose: Check the validity of a section * @@ -323,7 +319,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5MF_sect_valid(const H5FS_section_class_t H5_ATTR_UNUSED *cls, +H5MF__sect_valid(const H5FS_section_class_t H5_ATTR_UNUSED *cls, const H5FS_section_info_t #ifdef NDEBUG H5_ATTR_UNUSED @@ -334,17 +330,17 @@ H5MF_sect_valid(const H5FS_section_class_t H5_ATTR_UNUSED *cls, const H5MF_free_section_t *sect = (const H5MF_free_section_t *)_sect; /* File free section */ #endif /* NDEBUG */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_STATIC_NOERR /* Check arguments. */ HDassert(sect); FUNC_LEAVE_NOAPI(SUCCEED) -} /* H5MF_sect_valid() */ +} /* H5MF__sect_valid() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_split + * Function: H5MF__sect_split * * Purpose: Split SECT into 2 sections: fragment for alignment & the aligned section * SECT's addr and size are updated to point to the aligned section @@ -357,14 +353,14 @@ H5MF_sect_valid(const H5FS_section_class_t H5_ATTR_UNUSED *cls, *------------------------------------------------------------------------- */ static H5FS_section_info_t * -H5MF_sect_split(H5FS_section_info_t *sect, hsize_t frag_size) +H5MF__sect_split(H5FS_section_info_t *sect, hsize_t frag_size) { H5MF_free_section_t *ret_value = NULL; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* Allocate space for new section */ - if(NULL == (ret_value = H5MF_sect_new(sect->type, sect->addr, frag_size))) + if(NULL == (ret_value = H5MF__sect_new(sect->type, sect->addr, frag_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, NULL, "can't initialize free space section") /* Set new section's info */ @@ -373,14 +369,14 @@ H5MF_sect_split(H5FS_section_info_t *sect, hsize_t frag_size) done: FUNC_LEAVE_NOAPI((H5FS_section_info_t *)ret_value) -} /* end H5MF_sect_split() */ +} /* end H5MF__sect_split() */ /* * "simple" section callbacks */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_simple_can_merge + * Function: H5MF__sect_simple_can_merge * * Purpose: Can two sections of this type merge? * @@ -395,14 +391,14 @@ done: *------------------------------------------------------------------------- */ static htri_t -H5MF_sect_simple_can_merge(const H5FS_section_info_t *_sect1, +H5MF__sect_simple_can_merge(const H5FS_section_info_t *_sect1, const H5FS_section_info_t *_sect2, void H5_ATTR_UNUSED *_udata) { const H5MF_free_section_t *sect1 = (const H5MF_free_section_t *)_sect1; /* File free section */ const H5MF_free_section_t *sect2 = (const H5MF_free_section_t *)_sect2; /* File free section */ htri_t ret_value = FAIL; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_STATIC_NOERR /* Check arguments. */ HDassert(sect1); @@ -414,11 +410,11 @@ H5MF_sect_simple_can_merge(const H5FS_section_info_t *_sect1, ret_value = H5F_addr_eq(sect1->sect_info.addr + sect1->sect_info.size, sect2->sect_info.addr); FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_simple_can_merge() */ +} /* H5MF__sect_simple_can_merge() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_simple_merge + * Function: H5MF__sect_simple_merge * * Purpose: Merge two sections of this type * @@ -433,14 +429,14 @@ H5MF_sect_simple_can_merge(const H5FS_section_info_t *_sect1, *------------------------------------------------------------------------- */ static herr_t -H5MF_sect_simple_merge(H5FS_section_info_t **_sect1, H5FS_section_info_t *_sect2, +H5MF__sect_simple_merge(H5FS_section_info_t **_sect1, H5FS_section_info_t *_sect2, void H5_ATTR_UNUSED *_udata) { H5MF_free_section_t **sect1 = (H5MF_free_section_t **)_sect1; /* File free section */ H5MF_free_section_t *sect2 = (H5MF_free_section_t *)_sect2; /* File free section */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* Check arguments. */ HDassert(sect1); @@ -453,16 +449,16 @@ H5MF_sect_simple_merge(H5FS_section_info_t **_sect1, H5FS_section_info_t *_sect2 (*sect1)->sect_info.size += sect2->sect_info.size; /* Get rid of second section */ - if(H5MF_sect_free((H5FS_section_info_t *)sect2) < 0) + if(H5MF__sect_free((H5FS_section_info_t *)sect2) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free section node") done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_simple_merge() */ +} /* H5MF__sect_simple_merge() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_simple_can_shrink + * Function: H5MF__sect_simple_can_shrink * * Purpose: Can this section shrink the container? * @@ -475,7 +471,7 @@ done: *------------------------------------------------------------------------- */ static htri_t -H5MF_sect_simple_can_shrink(const H5FS_section_info_t *_sect, void *_udata) +H5MF__sect_simple_can_shrink(const H5FS_section_info_t *_sect, void *_udata) { const H5MF_free_section_t *sect = (const H5MF_free_section_t *)_sect; /* File free section */ H5MF_sect_ud_t *udata = (H5MF_sect_ud_t *)_udata; /* User data for callback */ @@ -483,7 +479,7 @@ H5MF_sect_simple_can_shrink(const H5FS_section_info_t *_sect, void *_udata) haddr_t end; /* End of section to extend */ htri_t ret_value = FAIL; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* Check arguments. */ HDassert(sect); @@ -518,7 +514,7 @@ HDfprintf(stderr, "%s: section {%a, %Hu}, shrinks file, eoa = %a\n", FUNC, sect- htri_t status; /* Status from aggregator adjoin */ /* See if section can absorb the aggregator & vice versa */ - if((status = H5MF_aggr_can_absorb(udata->f, &(udata->f->shared->meta_aggr), sect, &(udata->shrink))) < 0) + if((status = H5MF__aggr_can_absorb(udata->f, &(udata->f->shared->meta_aggr), sect, &(udata->shrink))) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTMERGE, FAIL, "error merging section with aggregation block") else if(status > 0) { /* Set the aggregator to operate on */ @@ -537,7 +533,7 @@ HDfprintf(stderr, "%s: section {%a, %Hu}, adjoins metadata aggregator\n", FUNC, htri_t status; /* Status from aggregator adjoin */ /* See if section can absorb the aggregator & vice versa */ - if((status = H5MF_aggr_can_absorb(udata->f, &(udata->f->shared->sdata_aggr), sect, &(udata->shrink))) < 0) + if((status = H5MF__aggr_can_absorb(udata->f, &(udata->f->shared->sdata_aggr), sect, &(udata->shrink))) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTMERGE, FAIL, "error merging section with aggregation block") else if(status > 0) { /* Set the aggregator to operate on */ @@ -557,11 +553,11 @@ HDfprintf(stderr, "%s: section {%a, %Hu}, adjoins small data aggregator\n", FUNC done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_simple_can_shrink() */ +} /* H5MF__sect_simple_can_shrink() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_simple_shrink + * Function: H5MF__sect_simple_shrink * * Purpose: Shrink container with section * @@ -574,13 +570,13 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5MF_sect_simple_shrink(H5FS_section_info_t **_sect, void *_udata) +H5MF__sect_simple_shrink(H5FS_section_info_t **_sect, void *_udata) { H5MF_free_section_t **sect = (H5MF_free_section_t **)_sect; /* File free section */ H5MF_sect_ud_t *udata = (H5MF_sect_ud_t *)_udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* Check arguments. */ HDassert(sect); @@ -601,14 +597,14 @@ H5MF_sect_simple_shrink(H5FS_section_info_t **_sect, void *_udata) HDassert(udata->aggr); /* Absorb the section into the aggregator or vice versa */ - if(H5MF_aggr_absorb(udata->f, udata->aggr, *sect, udata->allow_sect_absorb) < 0) + if(H5MF__aggr_absorb(udata->f, udata->aggr, *sect, udata->allow_sect_absorb) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTMERGE, FAIL, "can't absorb section into aggregator or vice versa") } /* end else */ /* Check for freeing section */ if(udata->shrink != H5MF_SHRINK_SECT_ABSORB_AGGR) { /* Free section */ - if(H5MF_sect_free((H5FS_section_info_t *)*sect) < 0) + if(H5MF__sect_free((H5FS_section_info_t *)*sect) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free simple section node") /* Mark section as freed, for free space manager */ @@ -617,7 +613,7 @@ H5MF_sect_simple_shrink(H5FS_section_info_t **_sect, void *_udata) done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_simple_shrink() */ +} /* H5MF__sect_simple_shrink() */ /* * "small" section callbacks @@ -625,7 +621,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5MF_sect_small_add + * Function: H5MF__sect_small_add * * Purpose: Perform actions on a small "meta" action before adding it to the free space manager: * 1) Drop the section if it is at page end and its size <= page end threshold @@ -640,7 +636,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5MF_sect_small_add(H5FS_section_info_t **_sect, unsigned *flags, void *_udata) +H5MF__sect_small_add(H5FS_section_info_t **_sect, unsigned *flags, void *_udata) { H5MF_free_section_t **sect = (H5MF_free_section_t **)_sect; /* Fractal heap free section */ H5MF_sect_ud_t *udata = (H5MF_sect_ud_t *)_udata; /* User data for callback */ @@ -648,7 +644,7 @@ H5MF_sect_small_add(H5FS_section_info_t **_sect, unsigned *flags, void *_udata) hsize_t rem, prem; herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC #ifdef H5MF_ALLOC_DEBUG_MORE HDfprintf(stderr, "%s: Entering, section {%a, %Hu}\n", FUNC, (*sect)->sect_info.addr, (*sect)->sect_info.size); @@ -664,7 +660,7 @@ HDfprintf(stderr, "%s: Entering, section {%a, %Hu}\n", FUNC, (*sect)->sect_info. /* Drop the section if it is at page end and its size is <= pgend threshold */ if(!rem && (*sect)->sect_info.size <= H5F_PGEND_META_THRES(udata->f) && (*flags & H5FS_ADD_RETURNED_SPACE)) { - if(H5MF_sect_free((H5FS_section_info_t *)(*sect)) < 0) + if(H5MF__sect_free((H5FS_section_info_t *)(*sect)) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free section node") *sect = NULL; *flags &= (unsigned)~H5FS_ADD_RETURNED_SPACE; @@ -684,122 +680,11 @@ HDfprintf(stderr, "%s: section is adjusted {%a, %Hu}\n", FUNC, (*sect)->sect_inf done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_small_add() */ - - -/*------------------------------------------------------------------------- - * Function: H5MF_sect_small_can_shrink - * - * Purpose: Can this section shrink the container? - * - * Note: A small section is allowed to shrink only at closing. - * - * Note: This is unused currently, to maintain the invariant that the - * file size is always a multiple of the page size. - * - * (This function should probably be deleted, or the invariant - * relaxed) - * - * Return: Success: non-negative (TRUE/FALSE) - * Failure: negative - * - * Programmer: Vailin Choi; Dec 2012 - * - *------------------------------------------------------------------------- - */ -static htri_t -H5MF_sect_small_can_shrink(const H5FS_section_info_t *_sect, void *_udata) -{ - const H5MF_free_section_t *sect = (const H5MF_free_section_t *)_sect; /* File free section */ - H5MF_sect_ud_t *udata = (H5MF_sect_ud_t *)_udata; /* User data for callback */ - haddr_t eoa; /* End of address space in the file */ - haddr_t end; /* End of section to extend */ - htri_t ret_value = FALSE; /* Return value */ - - FUNC_ENTER_NOAPI_NOINIT - - /* Check arguments. */ - HDassert(sect); - HDassert(udata); - HDassert(udata->f); - - /* Retrieve the end of the file's address space */ - if(HADDR_UNDEF == (eoa = H5FD_get_eoa(udata->f->shared->lf, udata->alloc_type))) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "driver get_eoa request failed") - - /* Compute address of end of section to check */ - end = sect->sect_info.addr + sect->sect_info.size; - - /* Check if the section is exactly at the end of the allocated space in the file */ - if(H5F_addr_eq(end, eoa) && sect->sect_info.size == udata->f->shared->fs_page_size) { - udata->shrink = H5MF_SHRINK_EOA; - -#ifdef H5MF_ALLOC_DEBUG_MORE -HDfprintf(stderr, "%s: section {%a, %Hu}, shrinks file, eoa = %a\n", FUNC, sect->sect_info.addr, sect->sect_info.size, eoa); -#endif /* H5MF_ALLOC_DEBUG_MORE */ - - /* Indicate shrinking can occur */ - HGOTO_DONE(TRUE) - } /* end if */ - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_small_can_shrink() */ - - -/*------------------------------------------------------------------------- - * Function: H5MF_sect_small_shrink - * - * Purpose: Shrink container with section - * - * Note: This is unused currently, to maintain the invariant that the - * file size is always a multiple of the page size. - * - * (This function should probably be deleted, or the invariant - * relaxed) - * - * Return: Success: non-negative - * Failure: negative - * - * Programmer: Vailin Choi; Dec 2012 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5MF_sect_small_shrink(H5FS_section_info_t **_sect, void *_udata) -{ - H5MF_free_section_t **sect = (H5MF_free_section_t **)_sect; /* File free section */ - H5MF_sect_ud_t *udata = (H5MF_sect_ud_t *)_udata; /* User data for callback */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI_NOINIT - - /* Check arguments. */ - HDassert(sect); - HDassert((*sect)->sect_info.type == H5MF_FSPACE_SECT_SMALL); - HDassert(udata); - HDassert(udata->f); - HDassert(udata->shrink == H5MF_SHRINK_EOA); - HDassert(H5F_INTENT(udata->f) & H5F_ACC_RDWR); - - /* Release section's space at EOA */ - if(H5F__free(udata->f, udata->alloc_type, (*sect)->sect_info.addr, (*sect)->sect_info.size) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "driver free request failed") - - /* Free section */ - if(H5MF_sect_free((H5FS_section_info_t *)*sect) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free simple section node") - - /* Mark section as freed, for free space manager */ - *sect = NULL; - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_small_shrink() */ +} /* H5MF__sect_small_add() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_small_can_merge + * Function: H5MF__sect_small_can_merge * * Purpose: Can two sections of this type merge? * @@ -814,7 +699,7 @@ done: *------------------------------------------------------------------------- */ static htri_t -H5MF_sect_small_can_merge(const H5FS_section_info_t *_sect1, +H5MF__sect_small_can_merge(const H5FS_section_info_t *_sect1, const H5FS_section_info_t *_sect2, void *_udata) { const H5MF_free_section_t *sect1 = (const H5MF_free_section_t *)_sect1; /* File free section */ @@ -822,7 +707,7 @@ H5MF_sect_small_can_merge(const H5FS_section_info_t *_sect1, H5MF_sect_ud_t *udata = (H5MF_sect_ud_t *)_udata; /* User data for callback */ htri_t ret_value = FALSE; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_STATIC_NOERR /* Check arguments. */ HDassert(sect1); @@ -842,11 +727,11 @@ HDfprintf(stderr, "%s: Leaving: ret_value = %t\n", FUNC, ret_value); #endif /* H5MF_ALLOC_DEBUG_MORE */ FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_small_can_merge() */ +} /* H5MF__sect_small_can_merge() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_small_merge + * Function: H5MF__sect_small_merge * * Purpose: Merge two sections of this type * @@ -862,7 +747,7 @@ HDfprintf(stderr, "%s: Leaving: ret_value = %t\n", FUNC, ret_value); *------------------------------------------------------------------------- */ static herr_t -H5MF_sect_small_merge(H5FS_section_info_t **_sect1, H5FS_section_info_t *_sect2, +H5MF__sect_small_merge(H5FS_section_info_t **_sect1, H5FS_section_info_t *_sect2, void *_udata) { H5MF_free_section_t **sect1 = (H5MF_free_section_t **)_sect1; /* File free section */ @@ -870,7 +755,7 @@ H5MF_sect_small_merge(H5FS_section_info_t **_sect1, H5FS_section_info_t *_sect2, H5MF_sect_ud_t *udata = (H5MF_sect_ud_t *)_udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* Check arguments. */ HDassert(sect1); @@ -894,18 +779,18 @@ H5MF_sect_small_merge(H5FS_section_info_t **_sect1, H5FS_section_info_t *_sect2, if(H5PB_remove_entry(udata->f, (*sect1)->sect_info.addr) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "can't free merged section") - if(H5MF_sect_free((H5FS_section_info_t *)(*sect1)) < 0) + if(H5MF__sect_free((H5FS_section_info_t *)(*sect1)) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free section node") *sect1 = NULL; } /* end if */ /* Get rid of second section */ - if(H5MF_sect_free((H5FS_section_info_t *)sect2) < 0) + if(H5MF__sect_free((H5FS_section_info_t *)sect2) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free section node") done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_small_merge() */ +} /* H5MF__sect_small_merge() */ /* * "Large" section callbacks @@ -913,7 +798,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5MF_sect_large_can_merge (same as H5MF_sect_simple_can_merge) + * Function: H5MF__sect_large_can_merge (same as H5MF__sect_simple_can_merge) * * Purpose: Can two sections of this type merge? * @@ -927,14 +812,14 @@ done: *------------------------------------------------------------------------- */ static htri_t -H5MF_sect_large_can_merge(const H5FS_section_info_t *_sect1, +H5MF__sect_large_can_merge(const H5FS_section_info_t *_sect1, const H5FS_section_info_t *_sect2, void H5_ATTR_UNUSED *_udata) { const H5MF_free_section_t *sect1 = (const H5MF_free_section_t *)_sect1; /* File free section */ const H5MF_free_section_t *sect2 = (const H5MF_free_section_t *)_sect2; /* File free section */ htri_t ret_value = FALSE; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT_NOERR + FUNC_ENTER_STATIC_NOERR /* Check arguments. */ HDassert(sect1); @@ -949,11 +834,11 @@ HDfprintf(stderr, "%s: Leaving: ret_value = %t\n", FUNC, ret_value); #endif /* H5MF_ALLOC_DEBUG_MORE */ FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_large_can_merge() */ +} /* H5MF__sect_large_can_merge() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_large_merge (same as H5MF_sect_simple_merge) + * Function: H5MF__sect_large_merge (same as H5MF__sect_simple_merge) * * Purpose: Merge two sections of this type * @@ -967,14 +852,14 @@ HDfprintf(stderr, "%s: Leaving: ret_value = %t\n", FUNC, ret_value); *------------------------------------------------------------------------- */ static herr_t -H5MF_sect_large_merge(H5FS_section_info_t **_sect1, H5FS_section_info_t *_sect2, +H5MF__sect_large_merge(H5FS_section_info_t **_sect1, H5FS_section_info_t *_sect2, void H5_ATTR_UNUSED *_udata) { H5MF_free_section_t **sect1 = (H5MF_free_section_t **)_sect1; /* File free section */ H5MF_free_section_t *sect2 = (H5MF_free_section_t *)_sect2; /* File free section */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* Check arguments. */ HDassert(sect1); @@ -987,16 +872,16 @@ H5MF_sect_large_merge(H5FS_section_info_t **_sect1, H5FS_section_info_t *_sect2, (*sect1)->sect_info.size += sect2->sect_info.size; /* Get rid of second section */ - if(H5MF_sect_free((H5FS_section_info_t *)sect2) < 0) + if(H5MF__sect_free((H5FS_section_info_t *)sect2) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free section node") done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_large_merge() */ +} /* H5MF__sect_large_merge() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_large_can_shrink + * Function: H5MF__sect_large_can_shrink * * Purpose: Can this section shrink the container? * @@ -1008,7 +893,7 @@ done: *------------------------------------------------------------------------- */ static htri_t -H5MF_sect_large_can_shrink(const H5FS_section_info_t *_sect, void *_udata) +H5MF__sect_large_can_shrink(const H5FS_section_info_t *_sect, void *_udata) { const H5MF_free_section_t *sect = (const H5MF_free_section_t *)_sect; /* File free section */ H5MF_sect_ud_t *udata = (H5MF_sect_ud_t *)_udata; /* User data for callback */ @@ -1016,7 +901,7 @@ H5MF_sect_large_can_shrink(const H5FS_section_info_t *_sect, void *_udata) haddr_t end; /* End of section to extend */ htri_t ret_value = FALSE; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* Check arguments. */ HDassert(sect); @@ -1045,11 +930,11 @@ HDfprintf(stderr, "%s: section {%a, %Hu}, shrinks file, eoa = %a\n", FUNC, sect- done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_large_can_shrink() */ +} /* H5MF__sect_large_can_shrink() */ /*------------------------------------------------------------------------- - * Function: H5MF_sect_large_shrink + * Function: H5MF__sect_large_shrink * * Purpose: Shrink a large-sized section * @@ -1061,14 +946,14 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5MF_sect_large_shrink(H5FS_section_info_t **_sect, void *_udata) +H5MF__sect_large_shrink(H5FS_section_info_t **_sect, void *_udata) { H5MF_free_section_t **sect = (H5MF_free_section_t **)_sect; /* File free section */ H5MF_sect_ud_t *udata = (H5MF_sect_ud_t *)_udata; /* User data for callback */ hsize_t frag_size = 0; /* Fragment size */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* Check arguments. */ HDassert(sect); @@ -1091,7 +976,7 @@ H5MF_sect_large_shrink(H5FS_section_info_t **_sect, void *_udata) (*sect)->sect_info.size = frag_size; else { /* Free section */ - if(H5MF_sect_free((H5FS_section_info_t *)*sect) < 0) + if(H5MF__sect_free((H5FS_section_info_t *)*sect) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTRELEASE, FAIL, "can't free simple section node") /* Mark section as freed, for free space manager */ @@ -1100,5 +985,5 @@ H5MF_sect_large_shrink(H5FS_section_info_t **_sect, void *_udata) done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5MF_sect_large_shrink() */ +} /* H5MF__sect_large_shrink() */ @@ -435,63 +435,70 @@ done: /*------------------------------------------------------------------------- - * Function: H5Oget_info + * Function: H5Oget_info2 * - * Purpose: Retrieve information about an object. + * Purpose: Retrieve information about an object. * - * Return: Success: Non-negative - * Failure: Negative + * NOTE: Add a parameter "fields" to indicate selection of object info. * - * Programmer: Quincey Koziol - * November 21 2006 + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Neil Fortner + * July 7 2010 * *------------------------------------------------------------------------- */ herr_t -H5Oget_info(hid_t loc_id, H5O_info_t *oinfo) +H5Oget_info2(hid_t loc_id, H5O_info_t *oinfo, unsigned fields) { - H5G_loc_t loc; /* Location of group */ + H5G_loc_t loc; /* Location of group */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) - H5TRACE2("e", "i*x", loc_id, oinfo); + H5TRACE3("e", "i*xIu", loc_id, oinfo, fields); /* Check args */ if(H5G_loc(loc_id, &loc) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!oinfo) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + if(fields & ~H5O_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") /* Retrieve the object's information */ - if(H5O__get_info_by_name(&loc, ".", oinfo/*out*/) < 0) + if(H5O__get_info_by_name(&loc, ".", oinfo/*out*/, fields) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") done: FUNC_LEAVE_API(ret_value) -} /* end H5Oget_info() */ +} /* end H5Oget_info2() */ -/*------------------------------------------------------------------------- - * Function: H5Oget_info_by_name - * - * Purpose: Retrieve information about an object. - * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * November 21 2006 - * - *------------------------------------------------------------------------- - */ + /*------------------------------------------------------------------------- + * Function: H5Oget_info_by_name2 + * + * Purpose: Retrieve information about an object. + * + * NOTE: Add a parameter "fields" to indicate selection of object info. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Neil Fortner + * July 7 2010 + * + *------------------------------------------------------------------------- + */ herr_t -H5Oget_info_by_name(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id) +H5Oget_info_by_name2(hid_t loc_id, const char *name, H5O_info_t *oinfo, + unsigned fields, hid_t lapl_id) { H5G_loc_t loc; /* Location of group */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) - H5TRACE4("e", "i*s*xi", loc_id, name, oinfo, lapl_id); + H5TRACE5("e", "i*s*xIui", loc_id, name, oinfo, fields, lapl_id); /* Check args */ if(H5G_loc(loc_id, &loc) < 0) @@ -500,44 +507,48 @@ H5Oget_info_by_name(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lap HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") if(!oinfo) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + if(fields & ~H5O_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") /* Verify access property list and set up collective metadata if appropriate */ if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") /* Retrieve the object's information */ - if(H5O__get_info_by_name(&loc, name, oinfo/*out*/) < 0) + if(H5O__get_info_by_name(&loc, name, oinfo/*out*/, fields) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object: '%s'", name) done: FUNC_LEAVE_API(ret_value) -} /* end H5Oget_info_by_name() */ +} /* end H5Oget_info_by_name2() */ /*------------------------------------------------------------------------- - * Function: H5Oget_info_by_idx + * Function: H5Oget_info_by_idx2 * - * Purpose: Retrieve information about an object, according to the order + * Purpose: Retrieve information about an object, according to the order * of an index. * - * Return: Success: Non-negative - * Failure: Negative + * NOTE: Add a parameter "fields" to indicate selection of object info. + * + * Return: Success: Non-negative + * Failure: Negative * * Programmer: Quincey Koziol - * November 26 2006 + * November 26 2006 * *------------------------------------------------------------------------- */ herr_t -H5Oget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, hid_t lapl_id) +H5Oget_info_by_idx2(hid_t loc_id, const char *group_name, H5_index_t idx_type, + H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, unsigned fields, hid_t lapl_id) { H5G_loc_t loc; /* Location of group */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) - H5TRACE7("e", "i*sIiIoh*xi", loc_id, group_name, idx_type, order, n, oinfo, - lapl_id); + H5TRACE8("e", "i*sIiIoh*xIui", loc_id, group_name, idx_type, order, n, oinfo, + fields, lapl_id); /* Check args */ if(H5G_loc(loc_id, &loc) < 0) @@ -550,18 +561,20 @@ H5Oget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") if(!oinfo) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + if(fields & ~H5O_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") /* Verify access property list and set up collective metadata if appropriate */ if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") /* Retrieve the object's information */ - if(H5O__get_info_by_idx(&loc, group_name, idx_type, order, n, oinfo) < 0) + if(H5O__get_info_by_idx(&loc, group_name, idx_type, order, n, oinfo, fields) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") done: FUNC_LEAVE_API(ret_value) -} /* end H5Oget_info_by_idx() */ +} /* end H5Oget_info_by_idx2() */ /*------------------------------------------------------------------------- @@ -737,9 +750,9 @@ done: /*------------------------------------------------------------------------- - * Function: H5Ovisit + * Function: H5Ovisit2 * - * Purpose: Recursively visit an object and all the objects reachable + * Purpose: Recursively visit an object and all the objects reachable * from it. If the starting object is a group, all the objects * linked to from that group will be visited. Links within * each group are visited according to the order within the @@ -755,27 +768,30 @@ done: * iteration index and iteration order given) will be used to in * the callback about the object. * - * Return: Success: The return value of the first operator that + * NOTE: Add a a parameter "fields" to indicate selection of + * object info to be retrieved to the callback "op". + * + * Return: Success: The return value of the first operator that * returns non-zero, or zero if all members were * processed with no operator returning non-zero. * - * Failure: Negative if something goes wrong within the + * Failure: Negative if something goes wrong within the * library, or the negative value returned by one * of the operators. * * Programmer: Quincey Koziol - * November 25 2007 + * November 25 2007 * *------------------------------------------------------------------------- */ herr_t -H5Ovisit(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, - H5O_iterate_t op, void *op_data) +H5Ovisit2(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, + H5O_iterate_t op, void *op_data, unsigned fields) { herr_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) - H5TRACE5("e", "iIiIox*x", obj_id, idx_type, order, op, op_data); + H5TRACE6("e", "iIiIox*xIu", obj_id, idx_type, order, op, op_data, fields); /* Check args */ if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) @@ -784,20 +800,22 @@ H5Ovisit(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") if(!op) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") + if(fields & ~H5O_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") /* Call internal object visitation routine */ - if((ret_value = H5O__visit(obj_id, ".", idx_type, order, op, op_data)) < 0) + if((ret_value = H5O__visit(obj_id, ".", idx_type, order, op, op_data, fields)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object visitation failed") done: FUNC_LEAVE_API(ret_value) -} /* end H5Ovisit() */ +} /* end H5Ovisit2() */ /*------------------------------------------------------------------------- - * Function: H5Ovisit_by_name + * Function: H5Ovisit_by_name2 * - * Purpose: Recursively visit an object and all the objects reachable + * Purpose: Recursively visit an object and all the objects reachable * from it. If the starting object is a group, all the objects * linked to from that group will be visited. Links within * each group are visited according to the order within the @@ -813,28 +831,31 @@ done: * iteration index and iteration order given) will be used to in * the callback about the object. * - * Return: Success: The return value of the first operator that + * NOTE: Add a a parameter "fields" to indicate selection of + * object info to be retrieved to the callback "op". + * + * Return: Success: The return value of the first operator that * returns non-zero, or zero if all members were * processed with no operator returning non-zero. * - * Failure: Negative if something goes wrong within the + * Failure: Negative if something goes wrong within the * library, or the negative value returned by one * of the operators. * * Programmer: Quincey Koziol - * November 24 2007 + * November 24 2007 * *------------------------------------------------------------------------- */ herr_t -H5Ovisit_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type, - H5_iter_order_t order, H5O_iterate_t op, void *op_data, hid_t lapl_id) +H5Ovisit_by_name2(hid_t loc_id, const char *obj_name, H5_index_t idx_type, + H5_iter_order_t order, H5O_iterate_t op, void *op_data, unsigned fields, hid_t lapl_id) { herr_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) - H5TRACE7("e", "i*sIiIox*xi", loc_id, obj_name, idx_type, order, op, op_data, - lapl_id); + H5TRACE8("e", "i*sIiIox*xIui", loc_id, obj_name, idx_type, order, op, op_data, + fields, lapl_id); /* Check args */ if(!obj_name || !*obj_name) @@ -845,18 +866,20 @@ H5Ovisit_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type, HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") if(!op) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") + if(fields & ~H5O_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") /* Verify access property list and set up collective metadata if appropriate */ if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") /* Call internal object visitation routine */ - if((ret_value = H5O__visit(loc_id, obj_name, idx_type, order, op, op_data)) < 0) + if((ret_value = H5O__visit(loc_id, obj_name, idx_type, order, op, op_data, fields)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object visitation failed") done: FUNC_LEAVE_API(ret_value) -} /* end H5Ovisit_by_name() */ +} /* end H5Ovisit_by_name2() */ /*------------------------------------------------------------------------- diff --git a/src/H5Odeprec.c b/src/H5Odeprec.c new file mode 100644 index 0000000..876579d --- /dev/null +++ b/src/H5Odeprec.c @@ -0,0 +1,332 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/*------------------------------------------------------------------------- + * + * Purpose: Deprecated functions from the H5O interface. These + * functions are here for compatibility purposes and may be + * removed in the future. Applications should switch to the + * newer APIs. + * + *------------------------------------------------------------------------- + */ + +/****************/ +/* Module Setup */ +/****************/ + +#include "H5Omodule.h" /* This source code file is part of the H5O module */ + + +/***********/ +/* Headers */ +/***********/ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Opkg.h" /* Object headers */ + + +/****************/ +/* Local Macros */ +/****************/ + + +/******************/ +/* Local Typedefs */ +/******************/ + + +/********************/ +/* Package Typedefs */ +/********************/ + + +/********************/ +/* Local Prototypes */ +/********************/ + + +/*********************/ +/* Package Variables */ +/*********************/ + + +/*****************************/ +/* Library Private Variables */ +/*****************************/ + + +/*******************/ +/* Local Variables */ +/*******************/ + + +#ifndef H5_NO_DEPRECATED_SYMBOLS + + +/*------------------------------------------------------------------------- + * Function: H5Oget_info1 + * + * Purpose: Retrieve information about an object. + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_info1(hid_t loc_id, H5O_info_t *oinfo) +{ + H5G_loc_t loc; /* Location of group */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE2("e", "i*x", loc_id, oinfo); + + /* Check args */ + if(H5G_loc(loc_id, &loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + + /* Retrieve the object's information */ + if(H5O__get_info_by_name(&loc, ".", oinfo/*out*/, H5O_INFO_ALL) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_info1() */ + + +/*------------------------------------------------------------------------- + * Function: H5Oget_info_by_name1 + * + * Purpose: Retrieve information about an object. + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_info_by_name1(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id) +{ + H5G_loc_t loc; /* Location of group */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE4("e", "i*s*xi", loc_id, name, oinfo, lapl_id); + + /* Check args */ + if(H5G_loc(loc_id, &loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + if(!name || !*name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + /* Retrieve the object's information */ + if(H5O__get_info_by_name(&loc, name, oinfo/*out*/, H5O_INFO_ALL) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object: '%s'", name) + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_info_by_name1() */ + + +/*------------------------------------------------------------------------- + * Function: H5Oget_info_by_idx1 + * + * Purpose: Retrieve information about an object, according to the order + * of an index. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Quincey Koziol + * November 26 2006 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_info_by_idx1(hid_t loc_id, const char *group_name, H5_index_t idx_type, + H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, hid_t lapl_id) +{ + H5G_loc_t loc; /* Location of group */ + H5G_loc_t obj_loc; /* Location used to open group */ + H5G_name_t obj_path; /* Opened object group hier. path */ + H5O_loc_t obj_oloc; /* Opened object object location */ + hbool_t loc_found = FALSE; /* Entry at 'name' found */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE7("e", "i*sIiIoh*xi", loc_id, group_name, idx_type, order, n, oinfo, + lapl_id); + + /* Check args */ + if(H5G_loc(loc_id, &loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + if(!group_name || !*group_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + /* Retrieve the object's information */ + if(H5O__get_info_by_idx(&loc, group_name, idx_type, order, n, oinfo, H5O_INFO_ALL) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") + +done: + /* Release the object location */ + if(loc_found && H5G_loc_free(&obj_loc) < 0) + HDONE_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "can't free location") + + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_info_by_idx1() */ + + +/*------------------------------------------------------------------------- + * Function: H5Ovisit1 + * + * Purpose: Recursively visit an object and all the objects reachable + * from it. If the starting object is a group, all the objects + * linked to from that group will be visited. Links within + * each group are visited according to the order within the + * specified index (unless the specified index does not exist for + * a particular group, then the "name" index is used). + * + * NOTE: Soft links and user-defined links are ignored during + * this operation. + * + * NOTE: Each _object_ reachable from the initial group will only + * be visited once. If multiple hard links point to the same + * object, the first link to the object's path (according to the + * iteration index and iteration order given) will be used to in + * the callback about the object. + * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. + * + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. + * + * Programmer: Quincey Koziol + * November 25 2007 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Ovisit1(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, + H5O_iterate_t op, void *op_data) +{ + herr_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE5("e", "iIiIox*x", obj_id, idx_type, order, op, op_data); + + /* Check args */ + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") + + /* Call internal object visitation routine */ + if((ret_value = H5O__visit(obj_id, ".", idx_type, order, op, op_data, H5O_INFO_ALL)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object visitation failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Ovisit1() */ + + +/*------------------------------------------------------------------------- + * Function: H5Ovisit_by_name1 + * + * Purpose: Recursively visit an object and all the objects reachable + * from it. If the starting object is a group, all the objects + * linked to from that group will be visited. Links within + * each group are visited according to the order within the + * specified index (unless the specified index does not exist for + * a particular group, then the "name" index is used). + * + * NOTE: Soft links and user-defined links are ignored during + * this operation. + * + * NOTE: Each _object_ reachable from the initial group will only + * be visited once. If multiple hard links point to the same + * object, the first link to the object's path (according to the + * iteration index and iteration order given) will be used to in + * the callback about the object. + * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. + * + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. + * + * Programmer: Quincey Koziol + * November 24 2007 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Ovisit_by_name1(hid_t loc_id, const char *obj_name, H5_index_t idx_type, + H5_iter_order_t order, H5O_iterate_t op, void *op_data, hid_t lapl_id) +{ + herr_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE7("e", "i*sIiIox*xi", loc_id, obj_name, idx_type, order, op, op_data, + lapl_id); + + /* Check args */ + if(!obj_name || !*obj_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + /* Call internal object visitation routine */ + if((ret_value = H5O__visit(loc_id, obj_name, idx_type, order, op, op_data, H5O_INFO_ALL)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object visitation failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Ovisit_by_name1() */ + +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + diff --git a/src/H5Oint.c b/src/H5Oint.c index c9e82c0..2752a25 100644 --- a/src/H5Oint.c +++ b/src/H5Oint.c @@ -61,6 +61,7 @@ typedef struct { H5SL_t *visited; /* Skip list for tracking visited nodes */ H5O_iterate_t op; /* Application callback */ void *op_data; /* Application's op data */ + unsigned fields; /* Selection of object info */ } H5O_iter_visit_ud_t; @@ -2211,20 +2212,22 @@ H5O__get_hdr_info_real(const H5O_t *oh, H5O_hdr_info_t *hdr) /*------------------------------------------------------------------------- - * Function: H5O_get_info + * Function: H5O_get_info * - * Purpose: Retrieve the information for an object + * Purpose: Retrieve the information for an object * - * Return: Success: Non-negative - * Failure: Negative + * Note: Add a parameter "fields" to indicate selection of object info. + * + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: Quincey Koziol - * November 21 2006 + * Programmer: Quincey Koziol + * November 21 2006 * *------------------------------------------------------------------------- */ herr_t -H5O_get_info(const H5O_loc_t *loc, hbool_t want_ih_info, H5O_info_t *oinfo) +H5O_get_info(const H5O_loc_t *loc, H5O_info_t *oinfo, unsigned fields) { const H5O_obj_class_t *obj_class; /* Class of object for header */ H5O_t *oh = NULL; /* Object header */ @@ -2240,76 +2243,83 @@ H5O_get_info(const H5O_loc_t *loc, hbool_t want_ih_info, H5O_info_t *oinfo) if(NULL == (oh = H5O_protect(loc, H5AC__READ_ONLY_FLAG, FALSE))) HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, FAIL, "unable to load object header") - /* Reset the object info structure */ - HDmemset(oinfo, 0, sizeof(*oinfo)); - - /* Retrieve the file's fileno */ - H5F_GET_FILENO(loc->file, oinfo->fileno); - - /* Set the object's address */ - oinfo->addr = loc->addr; - /* Get class for object */ if(NULL == (obj_class = H5O__obj_class_real(oh))) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to determine object class") - /* Retrieve the type of the object */ - oinfo->type = obj_class->type; + /* Reset the object info structure */ + HDmemset(oinfo, 0, sizeof(*oinfo)); - /* Set the object's reference count */ - oinfo->rc = oh->nlink; + /* Get basic information, if requested */ + if(fields & H5O_INFO_BASIC) { + /* Retrieve the file's fileno */ + H5F_GET_FILENO(loc->file, oinfo->fileno); - /* Get modification time for object */ - if(oh->version > H5O_VERSION_1) { - oinfo->atime = oh->atime; - oinfo->mtime = oh->mtime; - oinfo->ctime = oh->ctime; - oinfo->btime = oh->btime; - } /* end if */ - else { - htri_t exists; /* Flag if header message of interest exists */ + /* Set the object's address */ + oinfo->addr = loc->addr; - /* No information for access & modification fields */ - /* (we stopped updating the "modification time" header message for - * raw data changes, so the "modification time" header message - * is closest to the 'change time', in POSIX terms - QAK) - */ - oinfo->atime = 0; - oinfo->mtime = 0; - oinfo->btime = 0; - - /* Might be information for modification time */ - if((exists = H5O_msg_exists_oh(oh, H5O_MTIME_ID)) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "unable to check for MTIME message") - if(exists > 0) { - /* Get "old style" modification time info */ - if(NULL == H5O_msg_read_oh(loc->file, oh, H5O_MTIME_ID, &oinfo->ctime)) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't read MTIME message") + /* Retrieve the type of the object */ + oinfo->type = obj_class->type; + + /* Set the object's reference count */ + oinfo->rc = oh->nlink; + } + + /* Get time information, if requested */ + if(fields & H5O_INFO_TIME) { + if(oh->version > H5O_VERSION_1) { + oinfo->atime = oh->atime; + oinfo->mtime = oh->mtime; + oinfo->ctime = oh->ctime; + oinfo->btime = oh->btime; } /* end if */ else { - /* Check for "new style" modification time info */ - if((exists = H5O_msg_exists_oh(oh, H5O_MTIME_NEW_ID)) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "unable to check for MTIME_NEW message") - if(exists > 0) { - /* Get "new style" modification time info */ - if(NULL == H5O_msg_read_oh(loc->file, oh, H5O_MTIME_NEW_ID, &oinfo->ctime)) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't read MTIME_NEW message") + htri_t exists; /* Flag if header message of interest exists */ + + /* No information for access & modification fields */ + /* (we stopped updating the "modification time" header message for + * raw data changes, so the "modification time" header message + * is closest to the 'change time', in POSIX terms - QAK) + */ + oinfo->atime = 0; + oinfo->mtime = 0; + oinfo->btime = 0; + + /* Might be information for modification time */ + if((exists = H5O_msg_exists_oh(oh, H5O_MTIME_ID)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "unable to check for MTIME message") + if(exists > 0) { + /* Get "old style" modification time info */ + if(NULL == H5O_msg_read_oh(loc->file, oh, H5O_MTIME_ID, &oinfo->ctime)) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't read MTIME message") } /* end if */ - else - oinfo->ctime = 0; - } /* end else */ - } /* end else */ + else { + /* Check for "new style" modification time info */ + if((exists = H5O_msg_exists_oh(oh, H5O_MTIME_NEW_ID)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "unable to check for MTIME_NEW message") + if(exists > 0) { + /* Get "new style" modification time info */ + if(NULL == H5O_msg_read_oh(loc->file, oh, H5O_MTIME_NEW_ID, &oinfo->ctime)) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't read MTIME_NEW message") + } /* end if */ + else + oinfo->ctime = 0; + } /* end else */ + } /* end else */ + } /* end if */ - /* Get the information for the object header */ - if(H5O__get_hdr_info_real(oh, &oinfo->hdr) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object header info") + /* Get the information for the object header, if requested */ + if(fields & H5O_INFO_HDR) + if(H5O__get_hdr_info_real(oh, &oinfo->hdr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object header info") /* Retrieve # of attributes */ - if(H5O_attr_count_real(loc->file, oh, &oinfo->num_attrs) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve attribute count") + if(fields & H5O_INFO_NUM_ATTRS) + if(H5O_attr_count_real(loc->file, oh, &oinfo->num_attrs) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve attribute count") /* Get B-tree & heap metadata storage size, if requested */ - if(want_ih_info) { + if(fields & H5O_INFO_META_SIZE) { /* Check for 'bh_info' callback for this type of object */ if(obj_class->bh_info) /* Call the object's class 'bh_info' routine */ @@ -2317,9 +2327,10 @@ H5O_get_info(const H5O_loc_t *loc, hbool_t want_ih_info, H5O_info_t *oinfo) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object's btree & heap info") /* Get B-tree & heap info for any attributes */ - if(oinfo->num_attrs > 0) + if(!(fields & H5O_INFO_NUM_ATTRS) || oinfo->num_attrs > 0) { if(H5O__attr_bh_info(loc->file, oh, &oinfo->meta_size.attr) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve attribute btree & heap info") + } /* end if */ } /* end if */ done: @@ -2338,16 +2349,18 @@ done: * Note: This routine is needed so that there's a non-API routine * that can set up VOL / SWMR info (which need a DXPL). * - * Return: Success: Non-negative - * Failure: Negative + * Note: Add a parameter "fields" to indicate selection of object info. + * + * Return: Success: Non-negative + * Failure: Negative * * Programmer: Quincey Koziol - * December 28, 2017 + * December 28, 2017 * *------------------------------------------------------------------------- */ herr_t -H5O__get_info_by_name(const H5G_loc_t *loc, const char *name, H5O_info_t *oinfo) +H5O__get_info_by_name(const H5G_loc_t *loc, const char *name, H5O_info_t *oinfo, unsigned fields) { herr_t ret_value = SUCCEED; /* Return value */ @@ -2359,7 +2372,7 @@ H5O__get_info_by_name(const H5G_loc_t *loc, const char *name, H5O_info_t *oinfo) HDassert(oinfo); /* Retrieve the object's information */ - if(H5G_loc_info(loc, name, TRUE, oinfo/*out*/) < 0) + if(H5G_loc_info(loc, name, oinfo/*out*/, fields) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object info") done: @@ -2376,17 +2389,19 @@ done: * Note: This routine is needed so that there's a non-API routine * that can set up VOL / SWMR info (which need a DXPL). * - * Return: Success: Non-negative - * Failure: Negative + * Note: Add a parameter "fields" to indicate selection of object info. * - * Programmer: Quincey Koziol - * December 28, 2017 + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Quincey Koziol + * December 28, 2017 * *------------------------------------------------------------------------- */ herr_t H5O__get_info_by_idx(const H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo) + H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, unsigned fields) { H5G_loc_t obj_loc; /* Location used to open group */ H5G_name_t obj_path; /* Opened object group hier. path */ @@ -2412,7 +2427,7 @@ H5O__get_info_by_idx(const H5G_loc_t *loc, const char *group_name, H5_index_t id loc_found = TRUE; /* Retrieve the object's information */ - if(H5O_get_info(obj_loc.oloc, TRUE, oinfo) < 0) + if(H5O_get_info(obj_loc.oloc, oinfo, fields) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object info") done: @@ -2793,7 +2808,7 @@ H5O__visit_cb(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info_t *li H5O_info_t oinfo; /* Object info */ /* Get the object's info */ - if(H5O_get_info(&obj_oloc, TRUE, &oinfo) < 0) + if(H5O_get_info(&obj_oloc, &oinfo, udata->fields) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, H5_ITER_ERROR, "unable to get object info") /* Make the application callback */ @@ -2833,7 +2848,7 @@ done: /*------------------------------------------------------------------------- * Function: H5O__visit * - * Purpose: Recursively visit an object and all the objects reachable + * Purpose: Recursively visit an object and all the objects reachable * from it. If the starting object is a group, all the objects * linked to from that group will be visited. Links within * each group are visited according to the order within the @@ -2849,22 +2864,24 @@ done: * iteration index and iteration order given) will be used to in * the callback about the object. * - * Return: Success: The return value of the first operator that + * Note: Add a parameter "fields" to indicate selection of object info. + * + * Return: Success: The return value of the first operator that * returns non-zero, or zero if all members were * processed with no operator returning non-zero. * - * Failure: Negative if something goes wrong within the + * Failure: Negative if something goes wrong within the * library, or the negative value returned by one * of the operators. * * Programmer: Quincey Koziol - * November 24 2007 + * November 24 2007 * *------------------------------------------------------------------------- */ herr_t H5O__visit(hid_t loc_id, const char *obj_name, H5_index_t idx_type, - H5_iter_order_t order, H5O_iterate_t op, void *op_data) + H5_iter_order_t order, H5O_iterate_t op, void *op_data, unsigned fields) { H5O_iter_visit_ud_t udata; /* User data for callback */ H5G_loc_t loc; /* Location of reference object */ @@ -2896,7 +2913,7 @@ H5O__visit(hid_t loc_id, const char *obj_name, H5_index_t idx_type, loc_found = TRUE; /* Get the object's info */ - if(H5O_get_info(&obj_oloc, TRUE, &oinfo) < 0) + if(H5O_get_info(&obj_oloc, &oinfo, fields) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to get object info") /* Open the object */ @@ -2925,6 +2942,7 @@ H5O__visit(hid_t loc_id, const char *obj_name, H5_index_t idx_type, udata.start_loc = &start_loc; udata.op = op; udata.op_data = op_data; + udata.fields = fields; /* Create skip list to store visited object information */ if((udata.visited = H5SL_create(H5SL_TYPE_OBJ, NULL)) == NULL) diff --git a/src/H5Opkg.h b/src/H5Opkg.h index f535e50..616f96b 100644 --- a/src/H5Opkg.h +++ b/src/H5Opkg.h @@ -567,15 +567,15 @@ H5_DLL int H5O__link_oh(H5F_t *f, int adjust, H5O_t *oh, hbool_t *deleted); H5_DLL herr_t H5O__link(const H5O_loc_t *loc, int adjust); H5_DLL htri_t H5O__exists_by_name(const H5G_loc_t *loc, const char *name); H5_DLL herr_t H5O__get_info_by_name(const H5G_loc_t *loc, const char *name, - H5O_info_t *oinfo); + H5O_info_t *oinfo, unsigned fields); H5_DLL herr_t H5O__get_info_by_idx(const H5G_loc_t *loc, const char *group_name, - H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo); + H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, unsigned fields); H5_DLL herr_t H5O__set_comment_by_name(const H5G_loc_t *loc, const char *name, const char *comment); H5_DLL ssize_t H5O__get_comment_by_name(const H5G_loc_t *loc, const char *name, char *comment, size_t bufsize); H5_DLL herr_t H5O__visit(hid_t loc_id, const char *obj_name, H5_index_t idx_type, - H5_iter_order_t order, H5O_iterate_t op, void *op_data); + H5_iter_order_t order, H5O_iterate_t op, void *op_data, unsigned fields); H5_DLL herr_t H5O__inc_rc(H5O_t *oh); H5_DLL herr_t H5O__dec_rc(H5O_t *oh); H5_DLL herr_t H5O__free(H5O_t *oh); diff --git a/src/H5Oprivate.h b/src/H5Oprivate.h index 696fd38..10063d5 100644 --- a/src/H5Oprivate.h +++ b/src/H5Oprivate.h @@ -881,8 +881,7 @@ H5_DLL herr_t H5O_bogus_oh(H5F_t *f, H5O_t *oh, unsigned mesg_id, unsigned mesg_ #endif /* H5O_ENABLE_BOGUS */ H5_DLL herr_t H5O_delete(H5F_t *f, haddr_t addr); H5_DLL herr_t H5O_get_hdr_info(const H5O_loc_t *oloc, H5O_hdr_info_t *hdr); -H5_DLL herr_t H5O_get_info(const H5O_loc_t *oloc, hbool_t want_ih_info, - H5O_info_t *oinfo); +H5_DLL herr_t H5O_get_info(const H5O_loc_t *oloc, H5O_info_t *oinfo, unsigned fields); H5_DLL herr_t H5O_obj_type(const H5O_loc_t *loc, H5O_type_t *obj_type); H5_DLL herr_t H5O_get_create_plist(const H5O_loc_t *loc, struct H5P_genplist_t *oc_plist); H5_DLL hid_t H5O_open_name(const H5G_loc_t *loc, const char *name, hbool_t app_ref); diff --git a/src/H5Opublic.h b/src/H5Opublic.h index 8d6dda4..da2910d 100644 --- a/src/H5Opublic.h +++ b/src/H5Opublic.h @@ -73,6 +73,17 @@ #define H5O_SHMESG_MAX_NINDEXES 8 #define H5O_SHMESG_MAX_LIST_SIZE 5000 +/* Flags for H5Oget_info. + * Theses flags determine which fields will be filled in in the H5O_info_t + * struct. + */ +#define H5O_INFO_BASIC 0x0001u /* Fill in the fileno, addr, type, and rc fields */ +#define H5O_INFO_TIME 0x0002u /* Fill in the atime, mtime, ctime, and btime fields */ +#define H5O_INFO_NUM_ATTRS 0x0004u /* Fill in the num_attrs field */ +#define H5O_INFO_HDR 0x0008u /* Fill in the hdr field */ +#define H5O_INFO_META_SIZE 0x0010u /* Fill in the meta_size field */ +#define H5O_INFO_ALL (H5O_INFO_BASIC | H5O_INFO_TIME | H5O_INFO_NUM_ATTRS | H5O_INFO_HDR | H5O_INFO_META_SIZE) + /*******************/ /* Public Typedefs */ /*******************/ @@ -156,12 +167,12 @@ H5_DLL hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr); H5_DLL hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); H5_DLL htri_t H5Oexists_by_name(hid_t loc_id, const char *name, hid_t lapl_id); -H5_DLL herr_t H5Oget_info(hid_t loc_id, H5O_info_t *oinfo); -H5_DLL herr_t H5Oget_info_by_name(hid_t loc_id, const char *name, H5O_info_t *oinfo, - hid_t lapl_id); -H5_DLL herr_t H5Oget_info_by_idx(hid_t loc_id, const char *group_name, +H5_DLL herr_t H5Oget_info2(hid_t loc_id, H5O_info_t *oinfo, unsigned fields); +H5_DLL herr_t H5Oget_info_by_name2(hid_t loc_id, const char *name, H5O_info_t *oinfo, + unsigned fields, hid_t lapl_id); +H5_DLL herr_t H5Oget_info_by_idx2(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, - hid_t lapl_id); + unsigned fields, hid_t lapl_id); H5_DLL herr_t H5Olink(hid_t obj_id, hid_t new_loc_id, const char *new_name, hid_t lcpl_id, hid_t lapl_id); H5_DLL herr_t H5Oincr_refcount(hid_t object_id); @@ -174,11 +185,11 @@ H5_DLL herr_t H5Oset_comment_by_name(hid_t loc_id, const char *name, H5_DLL ssize_t H5Oget_comment(hid_t obj_id, char *comment, size_t bufsize); H5_DLL ssize_t H5Oget_comment_by_name(hid_t loc_id, const char *name, char *comment, size_t bufsize, hid_t lapl_id); -H5_DLL herr_t H5Ovisit(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, - H5O_iterate_t op, void *op_data); -H5_DLL herr_t H5Ovisit_by_name(hid_t loc_id, const char *obj_name, +H5_DLL herr_t H5Ovisit2(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, + H5O_iterate_t op, void *op_data, unsigned fields); +H5_DLL herr_t H5Ovisit_by_name2(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, - void *op_data, hid_t lapl_id); + void *op_data, unsigned fields, hid_t lapl_id); H5_DLL herr_t H5Oclose(hid_t object_id); H5_DLL herr_t H5Oflush(hid_t obj_id); H5_DLL herr_t H5Orefresh(hid_t oid); @@ -205,7 +216,18 @@ typedef struct H5O_stat_t { } H5O_stat_t; /* Function prototypes */ +H5_DLL herr_t H5Oget_info1(hid_t loc_id, H5O_info_t *oinfo); +H5_DLL herr_t H5Oget_info_by_name1(hid_t loc_id, const char *name, H5O_info_t *oinfo, + hid_t lapl_id); +H5_DLL herr_t H5Oget_info_by_idx1(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, + hid_t lapl_id); +H5_DLL herr_t H5Ovisit1(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, + H5O_iterate_t op, void *op_data); +H5_DLL herr_t H5Ovisit_by_name1(hid_t loc_id, const char *obj_name, + H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, + void *op_data, hid_t lapl_id); #endif /* H5_NO_DEPRECATED_SYMBOLS */ #ifdef __cplusplus @@ -254,23 +254,23 @@ H5PB_print_stats(const H5PB_t *page_buf) printf("PAGE BUFFER STATISTICS:\n"); - printf("******* METADATA\n"); - printf("\t Total Accesses: %u\n", page_buf->accesses[0]); - printf("\t Hits: %u\n", page_buf->hits[0]); - printf("\t Misses: %u\n", page_buf->misses[0]); - printf("\t Evictions: %u\n", page_buf->evictions[0]); - printf("\t Bypasses: %u\n", page_buf->bypasses[0]); - printf("\t Hit Rate = %f%%\n", ((double)page_buf->hits[0]/(page_buf->accesses[0] - page_buf->bypasses[0]))*100); - printf("*****************\n\n"); - - printf("******* RAWDATA\n"); - printf("\t Total Accesses: %u\n", page_buf->accesses[1]); - printf("\t Hits: %u\n", page_buf->hits[1]); - printf("\t Misses: %u\n", page_buf->misses[1]); - printf("\t Evictions: %u\n", page_buf->evictions[1]); - printf("\t Bypasses: %u\n", page_buf->bypasses[1]); - printf("\t Hit Rate = %f%%\n", ((double)page_buf->hits[1]/(page_buf->accesses[1]-page_buf->bypasses[0]))*100); - printf("*****************\n\n"); + HDprintf("******* METADATA\n"); + HDprintf("\t Total Accesses: %u\n", page_buf->accesses[0]); + HDprintf("\t Hits: %u\n", page_buf->hits[0]); + HDprintf("\t Misses: %u\n", page_buf->misses[0]); + HDprintf("\t Evictions: %u\n", page_buf->evictions[0]); + HDprintf("\t Bypasses: %u\n", page_buf->bypasses[0]); + HDprintf("\t Hit Rate = %f%%\n", ((double)page_buf->hits[0]/(page_buf->accesses[0] - page_buf->bypasses[0]))*100); + HDprintf("*****************\n\n"); + + HDprintf("******* RAWDATA\n"); + HDprintf("\t Total Accesses: %u\n", page_buf->accesses[1]); + HDprintf("\t Hits: %u\n", page_buf->hits[1]); + HDprintf("\t Misses: %u\n", page_buf->misses[1]); + HDprintf("\t Evictions: %u\n", page_buf->evictions[1]); + HDprintf("\t Bypasses: %u\n", page_buf->bypasses[1]); + HDprintf("\t Hit Rate = %f%%\n", ((double)page_buf->hits[1]/(page_buf->accesses[1]-page_buf->bypasses[0]))*100); + HDprintf("*****************\n\n"); FUNC_LEAVE_NOAPI(SUCCEED) } /* H5PB_print_stats */ diff --git a/src/H5Pdxpl.c b/src/H5Pdxpl.c index e33e762..b56c137 100644 --- a/src/H5Pdxpl.c +++ b/src/H5Pdxpl.c @@ -152,22 +152,6 @@ #define H5D_XFER_XFORM_COPY H5P__dxfr_xform_copy #define H5D_XFER_XFORM_CMP H5P__dxfr_xform_cmp #define H5D_XFER_XFORM_CLOSE H5P__dxfr_xform_close -/* Definitions for properties of direct chunk write */ -#define H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_SIZE sizeof(hbool_t) -#define H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_DEF FALSE -#define H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_SIZE sizeof(uint32_t) -#define H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_DEF 0 -#define H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_SIZE sizeof(hsize_t *) -#define H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_DEF NULL -#define H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_SIZE sizeof(uint32_t) -#define H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_DEF 0 -/* Definitions for properties of direct chunk read */ -#define H5D_XFER_DIRECT_CHUNK_READ_FLAG_SIZE sizeof(hbool_t) -#define H5D_XFER_DIRECT_CHUNK_READ_FLAG_DEF FALSE -#define H5D_XFER_DIRECT_CHUNK_READ_FILTERS_SIZE sizeof(uint32_t) -#define H5D_XFER_DIRECT_CHUNK_READ_FILTERS_DEF 0 -#define H5D_XFER_DIRECT_CHUNK_READ_OFFSET_SIZE sizeof(hsize_t *) -#define H5D_XFER_DIRECT_CHUNK_READ_OFFSET_DEF NULL /******************/ @@ -266,13 +250,6 @@ static const H5Z_EDC_t H5D_def_enable_edc_g = H5D_XFER_EDC_DEF; /* De static const H5Z_cb_t H5D_def_filter_cb_g = H5D_XFER_FILTER_CB_DEF; /* Default value for filter callback */ static const H5T_conv_cb_t H5D_def_conv_cb_g = H5D_XFER_CONV_CB_DEF; /* Default value for datatype conversion callback */ static const void *H5D_def_xfer_xform_g = H5D_XFER_XFORM_DEF; /* Default value for data transform */ -static const hbool_t H5D_def_direct_chunk_flag_g = H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_DEF; /* Default value for the flag of direct chunk write */ -static const uint32_t H5D_def_direct_chunk_filters_g = H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_DEF; /* Default value for the filters of direct chunk write */ -static const hsize_t *H5D_def_direct_chunk_offset_g = H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_DEF; /* Default value for the offset of direct chunk write */ -static const uint32_t H5D_def_direct_chunk_datasize_g = H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_DEF; /* Default value for the datasize of direct chunk write */ -static const hbool_t direct_chunk_read_flag = H5D_XFER_DIRECT_CHUNK_READ_FLAG_DEF; /* Default value for the flag of direct chunk read */ -static const hsize_t *direct_chunk_read_offset = H5D_XFER_DIRECT_CHUNK_READ_OFFSET_DEF; /* Default value for the offset of direct chunk read */ -static const uint32_t direct_chunk_read_filters = H5D_XFER_DIRECT_CHUNK_READ_FILTERS_DEF; /* Default value for the filters of direct chunk read */ /*------------------------------------------------------------------------- @@ -423,48 +400,6 @@ H5P__dxfr_reg_prop(H5P_genclass_t *pclass) H5D_XFER_XFORM_DEL, H5D_XFER_XFORM_COPY, H5D_XFER_XFORM_CMP, H5D_XFER_XFORM_CLOSE) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - /* Register the property of flag for direct chunk write */ - /* (Note: this property should not have an encode/decode callback -QAK) */ - if(H5P_register_real(pclass, H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME, H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_SIZE, &H5D_def_direct_chunk_flag_g, - NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - - /* Register the property of filter for direct chunk write */ - /* (Note: this property should not have an encode/decode callback -QAK) */ - if(H5P_register_real(pclass, H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME, H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_SIZE, &H5D_def_direct_chunk_filters_g, - NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - - /* Register the property of offset for direct chunk write */ - /* (Note: this property should not have an encode/decode callback -QAK) */ - if(H5P_register_real(pclass, H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME, H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_SIZE, &H5D_def_direct_chunk_offset_g, - NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - - /* Register the property of datasize for direct chunk write */ - /* (Note: this property should not have an encode/decode callback -QAK) */ - if(H5P_register_real(pclass, H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME, H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_SIZE, &H5D_def_direct_chunk_datasize_g, - NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - - /* Register the property of flag for direct chunk read */ - /* (Note: this property should not have an encode/decode callback) */ - if(H5P_register_real(pclass, H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME, H5D_XFER_DIRECT_CHUNK_READ_FLAG_SIZE, &direct_chunk_read_flag, - NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - - /* Register the property of filter for direct chunk read */ - /* (Note: this property should not have an encode/decode callback) */ - if(H5P_register_real(pclass, H5D_XFER_DIRECT_CHUNK_READ_FILTERS_NAME, H5D_XFER_DIRECT_CHUNK_READ_FILTERS_SIZE, &direct_chunk_read_filters, - NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - - /* Register the property of offset for direct chunk read */ - /* (Note: this property should not have an encode/decode callback) */ - if(H5P_register_real(pclass, H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME, H5D_XFER_DIRECT_CHUNK_READ_OFFSET_SIZE, &direct_chunk_read_offset, - NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__dxfr_reg_prop() */ @@ -141,7 +141,7 @@ done: void *ref; IN: Reference to open. RETURNS - Valid ID on success, Negative on failure + Valid ID on success, H5I_INVALID_HID on failure DESCRIPTION Given a reference to some object, open that object and return an ID for that object. @@ -203,7 +203,7 @@ done: void *ref; IN: Reference to open. RETURNS - Valid ID on success, Negative on failure + Valid ID on success, H5I_INVALID_HID on failure DESCRIPTION Given a reference to some object, creates a copy of the dataset pointed to's dataspace and defines a selection in the copy which is the region @@ -311,7 +311,7 @@ done: when passing in the size) RETURNS - Non-negative length of the path on success, Negative on failure + Non-negative length of the path on success, -1 on failure DESCRIPTION Given a reference to some object, determine a path to the object referenced in the file. @@ -335,23 +335,23 @@ H5Rget_name(hid_t id, H5R_type_t ref_type, const void *_ref, char *name, H5F_t *file; /* File object */ ssize_t ret_value; /* Return value */ - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE5("Zs", "iRt*x*sz", id, ref_type, _ref, name, size); /* Check args */ if (H5G_loc(id, &loc) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, (-1), "not a location") if (ref_type <= H5R_BADTYPE || ref_type >= H5R_MAXTYPE) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid reference type") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, (-1), "invalid reference type") if (_ref == NULL) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid reference pointer") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, (-1), "invalid reference pointer") /* Get the file pointer from the entry */ file = loc.oloc->file; /* Get name */ if((ret_value = H5R__get_name(file, id, ref_type, _ref, name, size)) < 0) - HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, FAIL, "unable to determine object path") + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, (-1), "unable to determine object path") done: FUNC_LEAVE_API(ret_value) diff --git a/src/H5Rdeprec.c b/src/H5Rdeprec.c index 2f41f7d..fb62430 100644 --- a/src/H5Rdeprec.c +++ b/src/H5Rdeprec.c @@ -141,7 +141,7 @@ done: * ref IN: Reference to open * * Return: Success: Valid HDF5 ID - * Failure: Negative + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ diff --git a/src/H5Rint.c b/src/H5Rint.c index 02f7778..acf6b56 100644 --- a/src/H5Rint.c +++ b/src/H5Rint.c @@ -587,7 +587,7 @@ done: H5F_t *file; IN: File the object being dereferenced is within H5R_type_t ref_type; IN: Type of reference to query void *ref; IN: Reference to query. - H5O_type_t *obj_type; OUT: The type of the object, set on success + H5O_type_t *obj_type; OUT: The type of the object, set on success RETURNS Non-negative on success/Negative on failure @@ -678,12 +678,12 @@ done: hid_t lapl_id; IN: LAPL to use for operation hid_t id; IN: Location ID given for reference H5R_type_t ref_type; IN: Type of reference - void *ref; IN: Reference to query. + void *_ref; IN: Reference to query. char *name; OUT: Buffer to place name of object referenced size_t size; IN: Size of name buffer RETURNS - Non-negative length of the path on success, Negative on failure + Non-negative length of the path on success, -1 on failure DESCRIPTION Given a reference to some object, determine a path to the object referenced in the file. @@ -732,7 +732,7 @@ H5R__get_name(H5F_t *f, hid_t id, H5R_type_t ref_type, const void *_ref, /* Get the dataset region from the heap (allocate inside routine) */ if ((buf = (uint8_t *)H5HG_read(oloc.file, &hobjid, NULL, NULL)) == NULL) - HGOTO_ERROR(H5E_REFERENCE, H5E_READERROR, FAIL, "Unable to read dataset region information") + HGOTO_ERROR(H5E_REFERENCE, H5E_READERROR, (-1), "Unable to read dataset region information") /* Get the object oid for the dataset */ p = buf; @@ -747,22 +747,21 @@ H5R__get_name(H5F_t *f, hid_t id, H5R_type_t ref_type, const void *_ref, case H5R_BADTYPE: case H5R_MAXTYPE: default: - HDassert("unknown reference type" && 0); - HGOTO_ERROR(H5E_REFERENCE, H5E_UNSUPPORTED, FAIL, "internal error (unknown reference type)") + HGOTO_ERROR(H5E_REFERENCE, H5E_UNSUPPORTED, (-1), "internal error (unknown reference type)") } /* end switch */ /* Retrieve file ID for name search */ - if ((file_id = H5I_get_file_id(id, FALSE)) < 0) - HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, FAIL, "can't retrieve file ID") + if ((file_id = H5F_get_id(f, FALSE)) < 0) + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, (-1), "can't get file ID") /* Get name, length, etc. */ if ((ret_value = H5G_get_name_by_addr(file_id, &oloc, name, size)) < 0) - HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, FAIL, "can't determine name") + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, (-1), "can't determine name") done: /* Close file ID used for search */ if (file_id > 0 && H5I_dec_ref(file_id) < 0) - HDONE_ERROR(H5E_REFERENCE, H5E_CANTDEC, FAIL, "can't decrement ref count of temp ID") + HDONE_ERROR(H5E_REFERENCE, H5E_CANTDEC, (-1), "can't decrement ref count of temp ID") FUNC_LEAVE_NOAPI_VOL(ret_value) } /* end H5R__get_name() */ diff --git a/src/H5Rpkg.h b/src/H5Rpkg.h index 49261eb..fbbff50 100644 --- a/src/H5Rpkg.h +++ b/src/H5Rpkg.h @@ -26,6 +26,11 @@ #include "H5Rprivate.h" /* Other private headers needed by this file */ +#include "H5Fprivate.h" /* Files */ +#include "H5Gprivate.h" /* Groups */ +#include "H5Oprivate.h" /* Object headers */ +#include "H5Sprivate.h" /* Dataspaces */ + /**************************/ /* Package Private Macros */ @@ -26,7 +26,6 @@ #include "H5Fprivate.h" /* Files */ #include "H5FLprivate.h" /* Free lists */ #include "H5Iprivate.h" /* IDs */ -#include "H5MMprivate.h" /* Memory management */ #include "H5Oprivate.h" /* Object headers */ #include "H5Spkg.h" /* Dataspaces */ @@ -208,6 +207,58 @@ H5S_term_package(void) FUNC_LEAVE_NOAPI(n) } /* end H5S_term_package() */ + + +/*-------------------------------------------------------------------------- + NAME + H5S_get_validiated_dataspace + PURPOSE + Get a pointer to a validated H5S_t pointer + USAGE + H5S_t *H5S_get_validated_space(dataspace_id, space) + hid_t space_id; IN: The ID of the dataspace + const H5S_t * space; OUT: A pointer to the dataspace + RETURNS + SUCCEED/FAIL + DESCRIPTION + Gets a pointer to a dataspace struct after validating it. The pointer + can be NULL (if the ID is H5S_ALL, for example). + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +herr_t +H5S_get_validated_dataspace(hid_t space_id, const H5S_t **space) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + HDassert(space); + + if (space_id < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid space_id (ID cannot be a negative number)") + + if (H5S_ALL == space_id) { + /* No special dataspace struct for H5S_ALL */ + *space = NULL; + } + else { + /* Get the dataspace pointer */ + if (NULL == (*space = (const H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "space_id is not a dataspace ID") + + /* Check for valid selection */ + if (H5S_SELECT_VALID(*space) != TRUE) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "selection + offset not within extent") + } + +done: + FUNC_LEAVE_NOAPI(ret_value) + +} /* end H5S_get_validated_dataspace() */ + /*-------------------------------------------------------------------------- NAME diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h index b4ae1ff..15ce75d 100644 --- a/src/H5Sprivate.h +++ b/src/H5Sprivate.h @@ -215,6 +215,7 @@ H5_DLL herr_t H5S_set_extent_real(H5S_t *space, const hsize_t *size); H5_DLL herr_t H5S_set_extent_simple(H5S_t *space, unsigned rank, const hsize_t *dims, const hsize_t *max); H5_DLL H5S_t *H5S_create(H5S_class_t type); +H5_DLL herr_t H5S_get_validated_dataspace(hid_t space_id, const H5S_t **space/*out*/); H5_DLL H5S_t *H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/]); H5_DLL herr_t H5S_set_version(H5F_t *f, H5S_t *ds); diff --git a/src/H5vers.txt b/src/H5vers.txt index 0303bf5..914c30e 100644 --- a/src/H5vers.txt +++ b/src/H5vers.txt @@ -56,6 +56,11 @@ FUNCTION: H5Ewalk; H5E_walk, H5E_error; v10, v18 FUNCTION: H5Fget_info; H5F_info; v18, v110 FUNCTION: H5Gcreate; ; v10, v18 FUNCTION: H5Gopen; ; v10, v18 +FUNCTION: H5Oget_info; ; v18, v112 +FUNCTION: H5Oget_info_by_name; ; v18, v112 +FUNCTION: H5Oget_info_by_idx; ; v18, v112 +FUNCTION: H5Ovisit; ; v18, v112 +FUNCTION: H5Ovisit_by_name; ; v18, v112 FUNCTION: H5Pget_filter; ; v10, v18 FUNCTION: H5Pget_filter_by_id; ; v16, v18 FUNCTION: H5Pinsert; ; v14, v18 diff --git a/src/Makefile.am b/src/Makefile.am index 21f3966..a0defad 100644 --- a/src/Makefile.am +++ b/src/Makefile.am @@ -80,7 +80,7 @@ libhdf5_la_SOURCES= H5.c H5checksum.c H5dbg.c H5system.c H5timer.c H5trace.c \ H5HP.c H5I.c H5Itest.c H5L.c H5Lexternal.c H5lib_settings.c \ H5MF.c H5MFaggr.c H5MFdbg.c H5MFsection.c \ H5MM.c H5MP.c H5MPtest.c \ - H5O.c H5Oainfo.c H5Oalloc.c H5Oattr.c \ + H5O.c H5Odeprec.c H5Oainfo.c H5Oalloc.c H5Oattr.c \ H5Oattribute.c H5Obogus.c H5Obtreek.c H5Ocache.c H5Ocache_image.c \ H5Ochunk.c \ H5Ocont.c H5Ocopy.c H5Odbg.c H5Odrvinfo.c H5Odtype.c H5Oefl.c \ diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt index 8badf3c..517a620 100644 --- a/test/CMakeLists.txt +++ b/test/CMakeLists.txt @@ -25,7 +25,7 @@ set (TEST_LIB_HEADERS add_library (${HDF5_TEST_LIB_TARGET} STATIC ${TEST_LIB_SOURCES} ${TEST_LIB_HEADERS}) target_include_directories(${HDF5_TEST_LIB_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR}" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) TARGET_C_PROPERTIES (${HDF5_TEST_LIB_TARGET} STATIC) @@ -41,7 +41,7 @@ H5_SET_LIB_OPTIONS (${HDF5_TEST_LIB_TARGET} ${HDF5_TEST_LIB_NAME} STATIC 0) if (BUILD_SHARED_LIBS) add_library (${HDF5_TEST_LIBSH_TARGET} SHARED ${TEST_LIB_SOURCES} ${TEST_LIB_HEADERS}) target_include_directories(${HDF5_TEST_LIBSH_TARGET} - PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR}" + PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) target_compile_definitions(${HDF5_TEST_LIBSH_TARGET} @@ -84,7 +84,7 @@ endif () set (HDF5_TEST_PLUGIN_TARGET ${HDF5_TEST_PLUGIN_CORENAME}) add_library (${HDF5_TEST_PLUGIN_TARGET} SHARED ${HDF5_TEST_SOURCE_DIR}/${plugin_name}.c) - target_include_directories(${HDF5_TEST_PLUGIN_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(${HDF5_TEST_PLUGIN_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${HDF5_TEST_PLUGIN_TARGET} SHARED) target_link_libraries (${HDF5_TEST_PLUGIN_TARGET} PUBLIC ${HDF5_TEST_LIB_TARGET}) H5_SET_LIB_OPTIONS (${HDF5_TEST_PLUGIN_TARGET} ${HDF5_TEST_PLUGIN_NAME} SHARED "LIB") @@ -109,7 +109,7 @@ endif () set (HDF5_TEST_PLUGIN_TARGET ${HDF5_TEST_PLUGIN_CORENAME}) add_library (${HDF5_TEST_PLUGIN_TARGET} SHARED ${HDF5_TEST_SOURCE_DIR}/${plugin_name}.c) - target_include_directories(${HDF5_TEST_PLUGIN_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(${HDF5_TEST_PLUGIN_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${HDF5_TEST_PLUGIN_TARGET} SHARED) target_link_libraries (${HDF5_TEST_PLUGIN_TARGET} PUBLIC ${HDF5_TEST_LIB_TARGET}) H5_SET_LIB_OPTIONS (${HDF5_TEST_PLUGIN_TARGET} ${HDF5_TEST_PLUGIN_NAME} SHARED "LIB") @@ -200,6 +200,7 @@ set (H5_TESTS cmpd_dset filter_fail extend + direct_chunk # compression lib link external efc objcopy @@ -237,13 +238,13 @@ set (H5_TESTS macro (ADD_H5_EXE file) add_executable (${file} ${HDF5_TEST_SOURCE_DIR}/${file}.c) - target_include_directories(${file} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR}") + target_include_directories(${file} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${file} STATIC) target_link_libraries (${file} PRIVATE ${HDF5_TEST_LIB_TARGET}) set_target_properties (${file} PROPERTIES FOLDER test) if (BUILD_SHARED_LIBS) add_executable (${file}-shared ${HDF5_TEST_SOURCE_DIR}/${file}.c) - target_include_directories(${file}-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR}") + target_include_directories(${file}-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${file}-shared SHARED) target_link_libraries (${file}-shared PRIVATE ${HDF5_TEST_LIBSH_TARGET}) set_target_properties (${file}-shared PROPERTIES FOLDER test) @@ -251,6 +252,7 @@ macro (ADD_H5_EXE file) endmacro () set (H5_TESTS_MULTIPLE + direct_chunk testhdf5 cache_image ttsafe @@ -265,16 +267,32 @@ endforeach () ############################################################################## ### M U L T I P L E S O U R C E T E S T S ### ############################################################################## +######### Also special handling of link libs ############# +#-- Adding test for direct_chunk +add_executable (direct_chunk ${HDF5_TEST_SOURCE_DIR}/direct_chunk.c) +target_include_directories(direct_chunk PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") +TARGET_C_PROPERTIES (direct_chunk STATIC) +target_link_libraries (direct_chunk PRIVATE ${HDF5_TEST_LIB_TARGET} ${LINK_COMP_LIBS}) +set_target_properties (direct_chunk PROPERTIES FOLDER test) +if (BUILD_SHARED_LIBS) + add_executable (direct_chunk-shared ${HDF5_TEST_SOURCE_DIR}/direct_chunk.c) + target_include_directories(direct_chunk-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TEST_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") + TARGET_C_PROPERTIES (direct_chunk-shared SHARED) + target_link_libraries (direct_chunk-shared PRIVATE ${HDF5_TEST_LIBSH_TARGET} ${LINK_COMP_LIBS}) + set_target_properties (direct_chunk-shared PROPERTIES FOLDER test) +endif () + +######### Special handling for multiple sources ############# #-- Adding test for testhdf5 add_executable (testhdf5 ${testhdf5_SOURCES}) -target_include_directories(testhdf5 PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(testhdf5 PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (testhdf5 STATIC) target_link_libraries (testhdf5 PRIVATE ${HDF5_TEST_LIB_TARGET}) set_target_properties (testhdf5 PROPERTIES FOLDER test) if (BUILD_SHARED_LIBS) add_executable (testhdf5-shared ${testhdf5_SOURCES}) - target_include_directories(testhdf5-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(testhdf5-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (testhdf5-shared SHARED) target_link_libraries (testhdf5-shared PRIVATE ${HDF5_TEST_LIBSH_TARGET}) set_target_properties (testhdf5-shared PROPERTIES FOLDER test) @@ -282,13 +300,13 @@ endif () #-- Adding test for cache_image add_executable (cache_image ${cache_image_SOURCES}) -target_include_directories(cache_image PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(cache_image PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (cache_image STATIC) target_link_libraries (cache_image PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (cache_image PROPERTIES FOLDER test) if (BUILD_SHARED_LIBS) add_executable (cache_image-shared ${cache_image_SOURCES}) - target_include_directories(cache_image-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(cache_image-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (cache_image-shared SHARED) target_link_libraries (cache_image-shared PRIVATE ${HDF5_TEST_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (cache_image-shared PROPERTIES FOLDER test) @@ -296,13 +314,13 @@ endif () #-- Adding test for ttsafe add_executable (ttsafe ${ttsafe_SOURCES}) -target_include_directories(ttsafe PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(ttsafe PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (ttsafe STATIC) target_link_libraries (ttsafe PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (ttsafe PROPERTIES FOLDER test) if (BUILD_SHARED_LIBS) add_executable (ttsafe-shared ${ttsafe_SOURCES}) - target_include_directories(ttsafe-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(ttsafe-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (ttsafe-shared SHARED) target_link_libraries (ttsafe-shared PRIVATE ${HDF5_TEST_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (ttsafe-shared PROPERTIES FOLDER test) @@ -375,7 +393,7 @@ endforeach () # This has to be copied to the test directory for execve() to find it # and it can't be renamed (i.e., no <foo>-shared). add_executable (accum_swmr_reader ${HDF5_TEST_SOURCE_DIR}/accum_swmr_reader.c) -target_include_directories(accum_swmr_reader PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(accum_swmr_reader PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (accum_swmr_reader STATIC) target_link_libraries (accum_swmr_reader PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (accum_swmr_reader PROPERTIES FOLDER test) @@ -391,13 +409,13 @@ endif () ############################################################################## if (BUILD_SHARED_LIBS) add_executable (filter_plugin ${HDF5_TEST_SOURCE_DIR}/filter_plugin.c) - target_include_directories(filter_plugin PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(filter_plugin PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (filter_plugin SHARED) target_link_libraries (filter_plugin PRIVATE ${HDF5_TEST_LIB_TARGET}) set_target_properties (filter_plugin PROPERTIES FOLDER test) else () add_executable (filter_plugin ${HDF5_TEST_SOURCE_DIR}/filter_plugin.c) - target_include_directories(filter_plugin PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(filter_plugin PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (filter_plugin STATIC) target_link_libraries (filter_plugin PRIVATE ${HDF5_TEST_LIB_TARGET}) set_target_properties (filter_plugin PROPERTIES FOLDER test) @@ -408,13 +426,13 @@ endif () ############################################################################## set (use_append_chunk_SOURCES ${HDF5_TEST_SOURCE_DIR}/use_append_chunk.c ${HDF5_TEST_SOURCE_DIR}/use_common.c) add_executable (use_append_chunk ${use_append_chunk_SOURCES}) -target_include_directories(use_append_chunk PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(use_append_chunk PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (use_append_chunk STATIC) target_link_libraries (use_append_chunk PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (use_append_chunk PROPERTIES FOLDER test) if (BUILD_SHARED_LIBS) add_executable (use_append_chunk-shared ${use_append_chunk_SOURCES}) - target_include_directories(use_append_chunk-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(use_append_chunk-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (use_append_chunk-shared SHARED) target_link_libraries (use_append_chunk-shared PRIVATE ${HDF5_TEST_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (use_append_chunk-shared PROPERTIES FOLDER test) @@ -422,13 +440,13 @@ endif () set (use_append_mchunks_SOURCES ${HDF5_TEST_SOURCE_DIR}/use_append_mchunks.c ${HDF5_TEST_SOURCE_DIR}/use_common.c) add_executable (use_append_mchunks ${use_append_mchunks_SOURCES}) -target_include_directories(use_append_mchunks PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(use_append_mchunks PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (use_append_mchunks STATIC) target_link_libraries (use_append_mchunks PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (use_append_mchunks PROPERTIES FOLDER test) if (BUILD_SHARED_LIBS) add_executable (use_append_mchunks-shared ${use_append_mchunks_SOURCES}) - target_include_directories(use_append_mchunks-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(use_append_mchunks-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (use_append_mchunks-shared SHARED) target_link_libraries (use_append_mchunks-shared PRIVATE ${HDF5_TEST_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (use_append_mchunks-shared PROPERTIES FOLDER test) @@ -436,13 +454,13 @@ endif () set (use_disable_mdc_flushes_SOURCES ${HDF5_TEST_SOURCE_DIR}/use_disable_mdc_flushes.c) add_executable (use_disable_mdc_flushes ${use_disable_mdc_flushes_SOURCES}) -target_include_directories(use_disable_mdc_flushes PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(use_disable_mdc_flushes PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (use_disable_mdc_flushes STATIC) target_link_libraries (use_disable_mdc_flushes PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (use_disable_mdc_flushes PROPERTIES FOLDER test) if (BUILD_SHARED_LIBS) add_executable (use_disable_mdc_flushes-shared ${use_disable_mdc_flushes_SOURCES}) - target_include_directories(use_disable_mdc_flushes-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(use_disable_mdc_flushes-shared PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (use_disable_mdc_flushes-shared SHARED) target_link_libraries (use_disable_mdc_flushes-shared PRIVATE ${HDF5_TEST_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (use_disable_mdc_flushes-shared PROPERTIES FOLDER test) diff --git a/test/CMakeTests.cmake b/test/CMakeTests.cmake index b4b71e1..39d9d0d 100644 --- a/test/CMakeTests.cmake +++ b/test/CMakeTests.cmake @@ -532,6 +532,7 @@ set (test_CLEANFILES vds_swmr.h5 vds_swmr_src_*.h5 tmp/vds_src_2.h5 + direct_chunk.h5 ) # Remove any output file left over from previous test run @@ -1008,7 +1009,7 @@ endif () if (HDF5_BUILD_GENERATORS) macro (ADD_H5_GENERATOR genfile) add_executable (${genfile} ${HDF5_TEST_SOURCE_DIR}/${genfile}.c) - target_include_directories(${genfile} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(${genfile} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${genfile} STATIC) target_link_libraries (${genfile} PRIVATE ${HDF5_TEST_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (${genfile} PROPERTIES FOLDER generator/test) diff --git a/test/Makefile.am b/test/Makefile.am index bb80fed..dcc002c 100644 --- a/test/Makefile.am +++ b/test/Makefile.am @@ -55,11 +55,12 @@ TEST_PROG= testhdf5 \ cache cache_api cache_image cache_tagging lheap ohdr stab gheap \ evict_on_close farray earray btree2 fheap \ pool accum hyperslab istore bittests dt_arith page_buffer \ - dtypes dsets cmpd_dset filter_fail extend external efc objcopy links unlink \ - twriteorder big mtime fillval mount flush1 flush2 app_ref enum \ - set_extent ttsafe enc_dec_plist enc_dec_plist_cross_platform\ - getname vfd ntypes dangle dtransform reserved cross_read \ - freespace mf vds file_image unregister cache_logging cork swmr + dtypes dsets cmpd_dset filter_fail extend direct_chunk external efc \ + objcopy links unlink twriteorder big mtime fillval mount \ + flush1 flush2 app_ref enum set_extent ttsafe enc_dec_plist \ + enc_dec_plist_cross_platform getname vfd ntypes dangle dtransform \ + reserved cross_read freespace mf vds file_image unregister \ + cache_logging cork swmr # List programs to be built when testing here. # error_test and err_compat are built at the same time as the other tests, but executed by testerror.sh. @@ -190,7 +191,7 @@ CHECK_CLEANFILES+=accum.h5 cmpd_dset.h5 compact_dataset.h5 dataset.h5 dset_offse flushrefresh_VERIFICATION_DONE atomic_data accum_swmr_big.h5 ohdr_swmr.h5 \ test_swmr*.h5 cache_logging.h5 cache_logging.out vds_swmr.h5 vds_swmr_src_*.h5 \ swmr[0-2].h5 swmr_writer.out swmr_writer.log.* swmr_reader.out.* swmr_reader.log.* \ - tbogus.h5.copy cache_image_test.h5 + tbogus.h5.copy cache_image_test.h5 direct_chunk.h5 # Sources for testhdf5 executable testhdf5_SOURCES=testhdf5.c tarray.c tattr.c tchecksum.c tconfig.c tfile.c \ diff --git a/test/btree2.c b/test/btree2.c index e2874b7..d26fed5 100644 --- a/test/btree2.c +++ b/test/btree2.c @@ -5259,7 +5259,7 @@ test_remove_basic(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -5269,7 +5269,7 @@ test_remove_basic(hid_t fapl, const H5B2_create_t *cparam, /* Attempt to remove a non-existant record from a B-tree with 1 record */ record = 0; H5E_BEGIN_TRY { - ret = H5B2_remove(bt2, &record, NULL, NULL); + ret = H5B2_remove(bt2, &record, NULL, NULL); } H5E_END_TRY; /* Should fail */ if(ret != FAIL) @@ -5302,7 +5302,7 @@ test_remove_basic(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the root node has been freed */ @@ -5384,7 +5384,7 @@ test_remove_basic(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the root node has not been freed */ @@ -5409,7 +5409,7 @@ test_remove_basic(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the root node has not been freed */ @@ -5434,7 +5434,7 @@ test_remove_basic(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the root node has not been freed */ @@ -5459,7 +5459,7 @@ test_remove_basic(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the root node has been freed */ @@ -5544,7 +5544,7 @@ test_remove_level1_noredistrib(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -5773,7 +5773,7 @@ test_remove_level1_redistrib(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -5971,7 +5971,7 @@ test_remove_level1_2leaf_merge(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -6149,7 +6149,7 @@ test_remove_level1_3leaf_merge(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -6280,7 +6280,7 @@ test_remove_level1_promote(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -6500,7 +6500,7 @@ test_remove_level1_promote_2leaf_redistrib(hid_t fapl, const H5B2_create_t *cpar TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -6647,7 +6647,7 @@ test_remove_level1_promote_3leaf_redistrib(hid_t fapl, const H5B2_create_t *cpar TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -6794,7 +6794,7 @@ test_remove_level1_promote_2leaf_merge(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -6938,7 +6938,7 @@ test_remove_level1_promote_3leaf_merge(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -7079,7 +7079,7 @@ test_remove_level1_collapse(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -7126,7 +7126,7 @@ test_remove_level1_collapse(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -7220,7 +7220,7 @@ test_remove_level2_promote(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -7505,7 +7505,7 @@ test_remove_level2_promote_2internal_redistrib(hid_t fapl, const H5B2_create_t * TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -7654,7 +7654,7 @@ test_remove_level2_promote_3internal_redistrib(hid_t fapl, const H5B2_create_t * TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -7803,7 +7803,7 @@ test_remove_level2_promote_2internal_merge(hid_t fapl, const H5B2_create_t *cpar TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -7953,7 +7953,7 @@ test_remove_level2_promote_3internal_merge(hid_t fapl, const H5B2_create_t *cpar TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -8103,7 +8103,7 @@ test_remove_level2_2internal_merge_left(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -8228,7 +8228,7 @@ test_remove_level2_2internal_merge_right(hid_t fapl, const H5B2_create_t *cparam TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -8353,7 +8353,7 @@ test_remove_level2_3internal_merge(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -8479,7 +8479,7 @@ test_remove_level2_collapse_right(hid_t fapl, const H5B2_create_t *cparam, TEST_ERROR /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -8765,7 +8765,7 @@ HDfprintf(stderr, "curr_time = %lu\n", (unsigned long)curr_time); } /* end for */ /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -8852,7 +8852,7 @@ HDfprintf(stderr, "curr_time = %lu\n", (unsigned long)curr_time); } /* end for */ /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -8937,7 +8937,7 @@ HDfprintf(stderr, "curr_time = %lu\n", (unsigned long)curr_time); } /* end for */ /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ @@ -9022,7 +9022,7 @@ HDfprintf(stderr, "curr_time = %lu\n", (unsigned long)curr_time); } /* end for */ /* Query the address of the root node in the B-tree */ - if(H5B2_get_root_addr_test(bt2, &root_addr) < 0) + if(H5B2__get_root_addr_test(bt2, &root_addr) < 0) FAIL_STACK_ERROR /* Make certain that the address of the root node is defined */ diff --git a/test/cache_tagging.c b/test/cache_tagging.c index 7a2bb49..d34cad3 100644 --- a/test/cache_tagging.c +++ b/test/cache_tagging.c @@ -377,7 +377,7 @@ get_object_header_tag(hid_t loc_id, haddr_t *tag) H5O_info_t oinfo; /* Object info */ /* Retrieve the info for the object */ - if(H5Oget_info(loc_id, &oinfo) < 0) + if(H5Oget_info2(loc_id, &oinfo, H5O_INFO_ALL) < 0) TEST_ERROR; /* Set the tag to return */ @@ -2937,7 +2937,7 @@ check_object_info_tags(void) /* Get information on an object by name */ /* ===================================== */ - if ( H5Oget_info_by_name(fid, GROUPNAME, &oinfo, H5P_DEFAULT) < 0 ) TEST_ERROR; + if ( H5Oget_info_by_name2(fid, GROUPNAME, &oinfo, H5O_INFO_ALL, H5P_DEFAULT) < 0 ) TEST_ERROR; /* =================================== */ /* Verification of Metadata Tag Values */ diff --git a/test/cork.c b/test/cork.c index 8c685ee..dceaf5a 100644 --- a/test/cork.c +++ b/test/cork.c @@ -126,7 +126,7 @@ verify_old_dset_cork(void) TEST_ERROR /* Get dataset object header address: DSET_BT1 */ - if(H5Oget_info(did, &oinfo) < 0) + if(H5Oget_info2(did, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_BT1 */ @@ -163,7 +163,7 @@ verify_old_dset_cork(void) FAIL_STACK_ERROR /* Get dataset object address */ - if(H5Oget_info(did2, &oinfo2) < 0) + if(H5Oget_info2(did2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_COMPACT */ @@ -216,7 +216,7 @@ verify_old_dset_cork(void) FAIL_STACK_ERROR /* Get dataset object address: DSET_CONTIG */ - if(H5Oget_info(did3, &oinfo3) < 0) + if(H5Oget_info2(did3, &oinfo3, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_CONTIG */ @@ -329,7 +329,7 @@ verify_obj_dset_cork(hbool_t swmr) TEST_ERROR /* Get dataset object header address */ - if(H5Oget_info(did, &oinfo) < 0) + if(H5Oget_info2(did, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR /* Verify cork status of the dataset: DSET */ @@ -372,7 +372,7 @@ verify_obj_dset_cork(hbool_t swmr) TEST_ERROR /* Get dataset object header address */ - if(H5Oget_info(did2, &oinfo2) < 0) + if(H5Oget_info2(did2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_NONE */ @@ -546,7 +546,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Get dataset object header address: DSET_EA */ - if(H5Oget_info(did, &oinfo) < 0) + if(H5Oget_info2(did, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_EA */ @@ -564,7 +564,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Get dataset object header address: DSET_FA */ - if(H5Oget_info(did2, &oinfo2) < 0) + if(H5Oget_info2(did2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_FA */ @@ -591,7 +591,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Get dataset object header address: DSET_BT2 */ - if(H5Oget_info(did3, &oinfo3) < 0) + if(H5Oget_info2(did3, &oinfo3, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_BT2 */ @@ -770,11 +770,11 @@ verify_group_cork(hbool_t swmr) TEST_ERROR /* Get group object header addresses */ - if(H5Oget_info(gid, &oinfo) < 0) + if(H5Oget_info2(gid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info(gid2, &oinfo2) < 0) + if(H5Oget_info2(gid2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info(gid3, &oinfo3) < 0) + if(H5Oget_info2(gid3, &oinfo3, H5O_INFO_BASIC) < 0) TEST_ERROR /* Verify cork status of the groups */ @@ -959,11 +959,11 @@ verify_named_cork(hbool_t swmr) TEST_ERROR /* Get named datatype object header addresses */ - if(H5Oget_info(tid, &oinfo) < 0) + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info(tid2, &oinfo2) < 0) + if(H5Oget_info2(tid2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info(tid3, &oinfo3) < 0) + if(H5Oget_info2(tid3, &oinfo3, H5O_INFO_BASIC) < 0) TEST_ERROR /* Verify cork status of the named datatypes */ @@ -1063,7 +1063,7 @@ verify_named_cork(hbool_t swmr) FAIL_STACK_ERROR /* Get dataset object header address */ - if(H5Oget_info(did, &oinfo4) < 0) + if(H5Oget_info2(did, &oinfo4, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET */ @@ -1277,7 +1277,7 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the group: gid2 */ - if(H5Oget_info(gid2, &oinfo1) < 0) + if(H5Oget_info2(gid2, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR if(H5C__verify_cork_tag_test(fid2, oinfo1.addr, TRUE) < 0) TEST_ERROR @@ -1305,7 +1305,7 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the dataset: did1 */ - if(H5Oget_info(did1, &oinfo2) < 0) + if(H5Oget_info2(did1, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR if(H5C__verify_cork_tag_test(fid1, oinfo2.addr, TRUE) < 0) TEST_ERROR @@ -1333,7 +1333,7 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the datatype: tid2 */ - if(H5Oget_info(tid2, &oinfo3) < 0) + if(H5Oget_info2(tid2, &oinfo3, H5O_INFO_BASIC) < 0) TEST_ERROR if(H5C__verify_cork_tag_test(fid2, oinfo3.addr, TRUE) < 0) TEST_ERROR @@ -1349,7 +1349,7 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the group: gid1 */ - if(H5Oget_info(gid1, &oinfo1) < 0) + if(H5Oget_info2(gid1, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR if(H5C__verify_cork_tag_test(fid1, oinfo1.addr, FALSE) < 0) TEST_ERROR @@ -1383,7 +1383,7 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the dataset: did2 */ - if(H5Oget_info(did2, &oinfo2) < 0) + if(H5Oget_info2(did2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR if(H5C__verify_cork_tag_test(fid2, oinfo2.addr, FALSE) < 0) TEST_ERROR diff --git a/hl/test/test_dset_opt.c b/test/direct_chunk.c index ef4cf13..2ef38ea 100644 --- a/hl/test/test_dset_opt.c +++ b/test/direct_chunk.c @@ -11,11 +11,7 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#include <stdlib.h> -#include <string.h> -#include "h5hltest.h" -#include "H5DOpublic.h" -#include <math.h> +#include "h5test.h" #if defined(H5_HAVE_ZLIB_H) && !defined(H5_ZLIB_HEADER) # define H5_ZLIB_HEADER "zlib.h" @@ -24,7 +20,7 @@ # include H5_ZLIB_HEADER /* "zlib.h" */ #endif -#define FILE_NAME "test_dectris.h5" +#define FILE_NAME "direct_chunk.h5" /* Datasets for Direct Write tests */ #define DATASETNAME1 "direct_write" @@ -100,7 +96,7 @@ const H5Z_class2_t H5Z_BOGUS2[1] = {{ /*------------------------------------------------------------------------- * Function: test_direct_chunk_write * - * Purpose: Test the basic functionality of H5DOwrite_chunk + * Purpose: Test the basic functionality of H5Dwrite_chunk * * Return: Success: 0 * Failure: 1 @@ -143,7 +139,7 @@ test_direct_chunk_write (hid_t file) hsize_t count[2]; /* Block count */ hsize_t block[2]; /* Block sizes */ - TESTING("basic functionality of H5DOwrite_chunk"); + TESTING("basic functionality of H5Dwrite_chunk"); /* * Create the data space with unlimited dimensions. @@ -184,7 +180,7 @@ test_direct_chunk_write (hid_t file) /* * Write the data for the dataset. It should stay in the chunk cache. - * It will be evicted from the cache by the H5DOwrite_chunk calls. + * It will be evicted from the cache by the H5Dwrite_chunk calls. */ if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, data)) < 0) @@ -218,7 +214,7 @@ test_direct_chunk_write (hid_t file) * dataset, using the direct writing function. */ for(i=0; i<NX/CHUNK_NX; i++) { for(j=0; j<NY/CHUNK_NY; j++) { - status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf); + status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf); offset[1] += CHUNK_NY; } offset[0] += CHUNK_NX; @@ -292,7 +288,7 @@ test_direct_chunk_write (hid_t file) offset[0] = offset[1] = 0; for(i=0; i<NX/CHUNK_NX; i++) { for(j=0; j<NY/CHUNK_NY; j++) { - status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf); + status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf); offset[1] += CHUNK_NY; } offset[0] += CHUNK_NX; @@ -389,7 +385,7 @@ test_direct_chunk_overwrite_data(hid_t fid) int16_t n; int16_t read_buf[OVERWRITE_CHUNK_NY][OVERWRITE_CHUNK_2NX]; - TESTING("overwriting existing data with H5DOwrite_chunk"); + TESTING("overwriting existing data with H5Dwrite_chunk"); /* Create the dataset's data space */ if ((sid = H5Screate_simple(OVERWRITE_NDIMS, dset_dims, dset_max_dims)) < 0) @@ -417,17 +413,17 @@ test_direct_chunk_overwrite_data(hid_t fid) } /* Write chunk data using the direct write function. */ - if (H5DOwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, data_buf) < 0) + if (H5Dwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, data_buf) < 0) FAIL_STACK_ERROR /* Write second chunk. */ offset[2] = OVERWRITE_CHUNK_NX; - if (H5DOwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, data_buf) < 0) + if (H5Dwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, data_buf) < 0) FAIL_STACK_ERROR /* Overwrite first chunk. */ offset[2] = 0; - if (H5DOwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, overwrite_buf) < 0) + if (H5Dwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, overwrite_buf) < 0) FAIL_STACK_ERROR /* Read the data back out */ @@ -504,7 +500,7 @@ test_skip_compress_write1(hid_t file) hsize_t count[2]; /* Block count */ hsize_t block[2]; /* Block sizes */ - TESTING("skipping compression filter for H5DOwrite_chunk/H5DOread_chunk"); + TESTING("skipping compression filter for H5Dwrite_chunk/H5Dread_chunk"); /* * Create the data space with unlimited dimensions. @@ -551,7 +547,7 @@ test_skip_compress_write1(hid_t file) filter_mask = 0x00000001; - if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0) + if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0) goto error; if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) @@ -597,7 +593,7 @@ test_skip_compress_write1(hid_t file) /* Read the raw chunk back */ HDmemset(&read_direct_buf, 0, sizeof(read_direct_buf)); - if((status = H5DOread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, read_direct_buf)) < 0) + if((status = H5Dread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, read_direct_buf)) < 0) goto error; if(read_filter_mask != filter_mask) goto error; @@ -822,7 +818,7 @@ test_skip_compress_write2(hid_t file) /* compression filter is the middle one to be skipped */ filter_mask = 0x00000002; - if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0) + if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0) goto error; if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) @@ -868,7 +864,7 @@ test_skip_compress_write2(hid_t file) /* Read the raw chunk back */ HDmemset(&read_direct_buf, 0, sizeof(read_direct_buf)); - if((status = H5DOread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, read_direct_buf)) < 0) + if((status = H5Dread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, read_direct_buf)) < 0) goto error; if(read_filter_mask != filter_mask) goto error; @@ -948,7 +944,7 @@ test_data_conv(hid_t file) unsigned filter_mask = 0; src_type_t direct_buf[CHUNK_NX][CHUNK_NY]; dst_type_t check_chunk[CHUNK_NX][CHUNK_NY]; - src_type_t read_chunk[CHUNK_NX][CHUNK_NY]; /* For H5DOread_chunk */ + src_type_t read_chunk[CHUNK_NX][CHUNK_NY]; /* For H5Dread_chunk */ hsize_t offset[2] = {0, 0}; size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(src_type_t); @@ -958,7 +954,7 @@ test_data_conv(hid_t file) hsize_t count[2]; /* Block count */ hsize_t block[2]; /* Block sizes */ - TESTING("data conversion for H5DOwrite_chunk/H5DOread_chunk"); + TESTING("data conversion for H5Dwrite_chunk/H5Dread_chunk"); /* * Create the data space with unlimited dimensions. @@ -1031,7 +1027,7 @@ test_data_conv(hid_t file) offset[0] = CHUNK_NX; offset[1] = CHUNK_NY; - if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0) + if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0) goto error; if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) @@ -1043,8 +1039,8 @@ test_data_conv(hid_t file) if((dataset = H5Dopen2(file, DATASETNAME4, H5P_DEFAULT)) < 0) goto error; - /* Use H5DOread_chunk() to read the uncompressed data */ - if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, read_chunk)) < 0) + /* Use H5Dread_chunk() to read the uncompressed data */ + if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, read_chunk)) < 0) goto error; /* Check that the values read are the same as the values written */ @@ -1141,7 +1137,7 @@ error: /*------------------------------------------------------------------------- * Function: test_invalid_parameters * - * Purpose: Test invalid parameters for H5DOwrite_chunk and H5DOread_chunk + * Purpose: Test invalid parameters for H5Dwrite_chunk and H5Dread_chunk * * Return: Success: 0 * Failure: 1 @@ -1170,7 +1166,7 @@ test_invalid_parameters(hid_t file) hsize_t chunk_nbytes; /* Chunk size */ - TESTING("invalid parameters for H5DOwrite_chunk/H5DOread_chunk"); + TESTING("invalid parameters for H5Dwrite_chunk/H5Dread_chunk"); /* * Create the data space with unlimited dimensions. @@ -1188,7 +1184,7 @@ test_invalid_parameters(hid_t file) goto error; /* - * Create a new contiguous dataset to verify H5DOwrite_chunk/H5DOread_chunk doesn't work + * Create a new contiguous dataset to verify H5Dwrite_chunk/H5Dread_chunk doesn't work */ if((dataset = H5Dcreate2(file, DATASETNAME5, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, cparms, H5P_DEFAULT)) < 0) @@ -1208,7 +1204,7 @@ test_invalid_parameters(hid_t file) offset[1] = CHUNK_NY; H5E_BEGIN_TRY { - if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) + if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) goto error; } H5E_END_TRY; @@ -1218,9 +1214,9 @@ test_invalid_parameters(hid_t file) goto error; } H5E_END_TRY; - /* Try to H5DOread_chunk from the contiguous dataset. It should fail */ + /* Try to H5Dread_chunk from the contiguous dataset. It should fail */ H5E_BEGIN_TRY { - if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) != FAIL) + if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) != FAIL) goto error; } H5E_END_TRY; @@ -1243,83 +1239,83 @@ test_invalid_parameters(hid_t file) cparms, H5P_DEFAULT)) < 0) goto error; - /* Check invalid dataset ID for H5DOwrite_chunk and H5DOread_chunk */ + /* Check invalid dataset ID for H5Dwrite_chunk and H5Dread_chunk */ H5E_BEGIN_TRY { - if((status = H5DOwrite_chunk((hid_t)-1, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) + if((status = H5Dwrite_chunk((hid_t)-1, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) goto error; } H5E_END_TRY; H5E_BEGIN_TRY { - if((status = H5DOread_chunk((hid_t)-1, dxpl, offset, &filter_mask, direct_buf)) != FAIL) + if((status = H5Dread_chunk((hid_t)-1, dxpl, offset, &filter_mask, direct_buf)) != FAIL) goto error; } H5E_END_TRY; - /* Check invalid DXPL ID for H5DOwrite_chunk and H5DOread_chunk */ + /* Check invalid DXPL ID for H5Dwrite_chunk and H5Dread_chunk */ H5E_BEGIN_TRY { - if((status = H5DOwrite_chunk(dataset, (hid_t)-1, filter_mask, offset, buf_size, direct_buf)) != FAIL) + if((status = H5Dwrite_chunk(dataset, (hid_t)-1, filter_mask, offset, buf_size, direct_buf)) != FAIL) goto error; } H5E_END_TRY; H5E_BEGIN_TRY { - if((status = H5DOread_chunk(dataset, (hid_t)-1, offset, &filter_mask, direct_buf)) != FAIL) + if((status = H5Dread_chunk(dataset, (hid_t)-1, offset, &filter_mask, direct_buf)) != FAIL) goto error; } H5E_END_TRY; - /* Check invalid OFFSET for H5DOwrite_chunk and H5DOread_chunk */ + /* Check invalid OFFSET for H5Dwrite_chunk and H5Dread_chunk */ H5E_BEGIN_TRY { - if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, NULL, buf_size, direct_buf)) != FAIL) + if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, NULL, buf_size, direct_buf)) != FAIL) goto error; } H5E_END_TRY; H5E_BEGIN_TRY { - if((status = H5DOread_chunk(dataset, dxpl, NULL, &filter_mask, direct_buf)) != FAIL) + if((status = H5Dread_chunk(dataset, dxpl, NULL, &filter_mask, direct_buf)) != FAIL) goto error; } H5E_END_TRY; - /* Check when OFFSET is out of dataset range for H5DOwrite_chunk and H5DOread_chunk */ + /* Check when OFFSET is out of dataset range for H5Dwrite_chunk and H5Dread_chunk */ offset[0] = NX + 1; offset[1] = NY; H5E_BEGIN_TRY { - if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) + if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) goto error; } H5E_END_TRY; H5E_BEGIN_TRY { - if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) != FAIL) + if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) != FAIL) goto error; } H5E_END_TRY; - /* Check when OFFSET is not on chunk boundary for H5DOwrite_chunk and H5DOread_chunk */ + /* Check when OFFSET is not on chunk boundary for H5Dwrite_chunk and H5Dread_chunk */ offset[0] = CHUNK_NX; offset[1] = CHUNK_NY + 1; H5E_BEGIN_TRY { - if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) + if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) goto error; } H5E_END_TRY; H5E_BEGIN_TRY { - if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) != FAIL) + if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) != FAIL) goto error; } H5E_END_TRY; - /* Check invalid buffer size for H5DOwrite_chunk only */ + /* Check invalid buffer size for H5Dwrite_chunk only */ offset[0] = CHUNK_NX; offset[1] = CHUNK_NY; buf_size = 0; H5E_BEGIN_TRY { - if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) + if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) goto error; } H5E_END_TRY; - /* Check invalid data buffer for H5DOwrite_chunk and H5DOread_chunk */ + /* Check invalid data buffer for H5Dwrite_chunk and H5Dread_chunk */ buf_size = CHUNK_NX*CHUNK_NY*sizeof(int); H5E_BEGIN_TRY { - if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, NULL)) != FAIL) + if((status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, NULL)) != FAIL) goto error; } H5E_END_TRY; H5E_BEGIN_TRY { - if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, NULL)) != FAIL) + if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, NULL)) != FAIL) goto error; } H5E_END_TRY; @@ -1353,7 +1349,7 @@ error: /*------------------------------------------------------------------------- * Function: test_direct_chunk_read_no_cache * - * Purpose: Test the basic functionality of H5DOread_chunk with the + * Purpose: Test the basic functionality of H5Dread_chunk with the * chunk cache diabled. * * Return: Success: 0 @@ -1379,10 +1375,10 @@ test_direct_chunk_read_no_cache (hid_t file) int data[NX][NY]; int i, j, k, l, n; /* local index variables */ - unsigned filter_mask = 0; /* filter mask returned from H5DOread_chunk */ - int direct_buf[CHUNK_NX][CHUNK_NY]; /* chunk read with H5DOread and manually decompressed */ + unsigned filter_mask = 0; /* filter mask returned from H5Dread_chunk */ + int direct_buf[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread and manually decompressed */ int check_chunk[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread */ - hsize_t offset[2]; /* chunk offset used for H5DOread_chunk */ + hsize_t offset[2]; /* chunk offset used for H5Dread_chunk */ size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int); Bytef *z_src = NULL; /* source buffer */ @@ -1397,7 +1393,7 @@ test_direct_chunk_read_no_cache (hid_t file) hsize_t count[2]; /* Block count */ hsize_t block[2]; /* Block sizes */ - TESTING("basic functionality of H5DOread_chunk (chunk cache disabled)"); + TESTING("basic functionality of H5Dread_chunk (chunk cache disabled)"); /* Create the data space with unlimited dimensions. */ if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0) @@ -1442,7 +1438,7 @@ test_direct_chunk_read_no_cache (hid_t file) outbuf = HDmalloc(z_src_nbytes); z_src = (Bytef *)outbuf; - /* For each chunk in the dataset, compare the result of H5Dread and H5DOread_chunk. */ + /* For each chunk in the dataset, compare the result of H5Dread and H5Dread_chunk. */ for(i=0; i<NX/CHUNK_NX; i++) { for(j=0; j<NY/CHUNK_NY; j++) { /* Select hyperslab for one chunk in the file */ @@ -1461,7 +1457,7 @@ test_direct_chunk_read_no_cache (hid_t file) offset[0] = (hsize_t)i * CHUNK_NX; offset[1] = (hsize_t)j * CHUNK_NY; /* Read the compressed chunk back using the direct read function. */ - if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, outbuf)) < 0) + if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, outbuf)) < 0) goto error; /* Check filter mask return value */ @@ -1547,10 +1543,10 @@ test_direct_chunk_read_cache (hid_t file, hbool_t flush) int data[NX][NY]; int i, j, k, l, n; /* local index variables */ - unsigned filter_mask = 0; /* filter mask returned from H5DOread_chunk */ - int direct_buf[CHUNK_NX][CHUNK_NY]; /* chunk read with H5DOread and manually decompressed */ + unsigned filter_mask = 0; /* filter mask returned from H5Dread_chunk */ + int direct_buf[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread and manually decompressed */ int check_chunk[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread */ - hsize_t offset[2]; /* chunk offset used for H5DOread_chunk */ + hsize_t offset[2]; /* chunk offset used for H5Dread_chunk */ size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int); Bytef *z_src = NULL; /* source buffer */ @@ -1567,9 +1563,9 @@ test_direct_chunk_read_cache (hid_t file, hbool_t flush) hsize_t block[2]; /* Block sizes */ if(flush) { - TESTING("basic functionality of H5DOread_chunk (flush chunk cache)"); + TESTING("basic functionality of H5Dread_chunk (flush chunk cache)"); } else { - TESTING("basic functionality of H5DOread_chunk (does not flush chunk cache)"); + TESTING("basic functionality of H5Dread_chunk (does not flush chunk cache)"); } /* Create the data space with unlimited dimensions. */ @@ -1615,7 +1611,7 @@ test_direct_chunk_read_cache (hid_t file, hbool_t flush) outbuf = HDmalloc(z_src_nbytes); z_src = (Bytef *)outbuf; - /* For each chunk in the dataset, compare the result of H5Dread and H5DOread_chunk. */ + /* For each chunk in the dataset, compare the result of H5Dread and H5Dread_chunk. */ for(i=0; i<NX/CHUNK_NX; i++) { for(j=0; j<NY/CHUNK_NY; j++) { /* Select hyperslab for one chunk in the file */ @@ -1641,7 +1637,7 @@ test_direct_chunk_read_cache (hid_t file, hbool_t flush) goto error; /* Read the compressed chunk back using the direct read function. */ - if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, outbuf)) < 0) + if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, outbuf)) < 0) goto error; /* Check filter mask return value */ @@ -1713,7 +1709,7 @@ error: /*------------------------------------------------------------------------- * Function: test_read_unfiltered_dset * - * Purpose: Test the basic functionality of H5DOread_chunk on a dataset + * Purpose: Test the basic functionality of H5Dread_chunk on a dataset * without no filters applied. * * Return: Success: 0 @@ -1749,7 +1745,7 @@ test_read_unfiltered_dset(hid_t file) hsize_t count[2]; /* Block count */ hsize_t block[2]; /* Block sizes */ - TESTING("basic functionality of H5DOread_chunk on unfiltered datasets"); + TESTING("basic functionality of H5Dread_chunk on unfiltered datasets"); /* Create the data space with unlimited dimensions. */ if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0) @@ -1778,7 +1774,7 @@ test_read_unfiltered_dset(hid_t file) /* Write the data for the dataset. * It should stay in the chunk cache and will be evicted/flushed by - * the H5DOread_chunk function call. */ + * the H5Dread_chunk function call. */ if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, data)) < 0) goto error; @@ -1786,7 +1782,7 @@ test_read_unfiltered_dset(hid_t file) if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) goto error; - /* For each chunk in the dataset, compare the result of H5Dread and H5DOread_chunk. */ + /* For each chunk in the dataset, compare the result of H5Dread and H5Dread_chunk. */ for(i=0; i<NX/CHUNK_NX; i++) { for(j=0; j<NY/CHUNK_NY; j++) { /* Select hyperslab for one chunk in the file */ @@ -1814,7 +1810,7 @@ test_read_unfiltered_dset(hid_t file) /* Read the raw chunk back */ HDmemset(&direct_buf, 0, sizeof(direct_buf)); filter_mask = UINT_MAX; - if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) < 0) + if((status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) < 0) goto error; /* Check filter mask return value */ @@ -1861,7 +1857,7 @@ error: /*------------------------------------------------------------------------- * Function: test_read_unallocated_chunk * - * Purpose: Tests the H5DOread_chunk and H5Dget_chunk_storage_size with valid + * Purpose: Tests the H5Dread_chunk and H5Dget_chunk_storage_size with valid * offets to chunks that have not been written to the dataset and are * not allocated in the chunk storage on disk. * @@ -1887,11 +1883,11 @@ test_read_unallocated_chunk (hid_t file) herr_t status; /* status from H5 function calls */ hsize_t i, j; /* local index variables */ - unsigned filter_mask = 0; /* filter mask returned from H5DOread_chunk */ - int direct_buf[CHUNK_NX][CHUNK_NY]; /* chunk read with H5DOread and manually decompressed */ - hsize_t offset[2]; /* chunk offset used for H5DOread_chunk */ + unsigned filter_mask = 0; /* filter mask returned from H5Dread_chunk */ + int direct_buf[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread and manually decompressed */ + hsize_t offset[2]; /* chunk offset used for H5Dread_chunk */ - TESTING("H5DOread_chunk with unallocated chunks"); + TESTING("H5Dread_chunk with unallocated chunks"); /* Create the data space with unlimited dimensions. */ if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0) @@ -1917,11 +1913,11 @@ test_read_unallocated_chunk (hid_t file) HDmemset(&chunk_dims, 0, sizeof(chunk_dims)); offset[0] = 0; offset[1] = 0; - if(H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, chunk_nbytes, &chunk_dims) < 0) + if(H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, chunk_nbytes, &chunk_dims) < 0) goto error; /* Attempt to read each chunk in the dataset. Chunks are not allocated, - * therefore we expect the result of H5DOread_chunk to fail. Chunk idx starts + * therefore we expect the result of H5Dread_chunk to fail. Chunk idx starts * at 1, since one chunk was written to init the chunk storage. */ for(i=1; i<NX/CHUNK_NX; i++) { for(j=0; j<NY/CHUNK_NY; j++) { @@ -1931,7 +1927,7 @@ test_read_unallocated_chunk (hid_t file) /* Read a non-existant chunk using the direct read function. */ H5E_BEGIN_TRY { - status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, &direct_buf); + status = H5Dread_chunk(dataset, dxpl, offset, &filter_mask, &direct_buf); } H5E_END_TRY; /* Check that the chunk read call does not succeed. */ @@ -2013,7 +2009,7 @@ test_single_chunk_latest(void) int rdata[DIM0][DIM1]; /* Read buffer */ int i, j; /* Local index variable */ - TESTING("H5DOwrite_chunk with single chunk and latest format"); + TESTING("H5Dwrite_chunk with single chunk and latest format"); /* Initialize data */ for (i=0; i<DIM0; i++) { @@ -2044,7 +2040,7 @@ test_single_chunk_latest(void) goto error; /* Write the data directly to the dataset */ - if(H5DOwrite_chunk(did, H5P_DEFAULT, 0, offset, CHUNK0*CHUNK1*4, (void *)wdata) < 0) + if(H5Dwrite_chunk(did, H5P_DEFAULT, 0, offset, CHUNK0*CHUNK1*4, (void *)wdata) < 0) goto error; /* @@ -2112,8 +2108,8 @@ error: /*------------------------------------------------------------------------- * Function: Main function * - * Purpose: Test direct chunk write function H5DOwrite_chunk and - * chunk direct read function H5DOread_chunk + * Purpose: Test direct chunk write function H5Dwrite_chunk and + * chunk direct read function H5Dread_chunk * * Return: Success: 0 * Failure: 1 diff --git a/test/dsets.c b/test/dsets.c index ca1e3d5..d23f438 100644 --- a/test/dsets.c +++ b/test/dsets.c @@ -10719,9 +10719,9 @@ test_earray_hdr_fd(const char *env_h5_driver, hid_t fapl) FAIL_STACK_ERROR; /* The second call triggered a bug in the library (JIRA issue: SWMR-95) */ - if(H5Oget_info_by_name(fid, DSET_EARRAY_HDR_FD, &info, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(fid, DSET_EARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; - if(H5Oget_info_by_name(fid, DSET_EARRAY_HDR_FD, &info, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(fid, DSET_EARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; if(H5Pclose(fapl) < 0) @@ -10839,9 +10839,9 @@ test_farray_hdr_fd(const char *env_h5_driver, hid_t fapl) FAIL_STACK_ERROR; /* The second call triggered a bug in the library (JIRA issue: SWMR-95) */ - if(H5Oget_info_by_name(fid, DSET_FARRAY_HDR_FD, &info, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(fid, DSET_FARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; - if(H5Oget_info_by_name(fid, DSET_FARRAY_HDR_FD, &info, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(fid, DSET_FARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; if(H5Pclose(fapl) < 0) @@ -10959,9 +10959,9 @@ test_bt2_hdr_fd(const char *env_h5_driver, hid_t fapl) FAIL_STACK_ERROR; /* The second call triggered a bug in the library (JIRA issue: SWMR-95) */ - if(H5Oget_info_by_name(fid, DSET_BT2_HDR_FD, &info, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(fid, DSET_BT2_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; - if(H5Oget_info_by_name(fid, DSET_BT2_HDR_FD, &info, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(fid, DSET_BT2_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; if(H5Pclose(fapl) < 0) @@ -12680,7 +12680,7 @@ dls_01_read_stuff( hid_t fid ) { did = H5Dopen2( fid, DLS_01_DATASET, H5P_DEFAULT ); if ( did <= 0 ) TEST_ERROR - status = H5Oget_info( did, &info ); + status = H5Oget_info2( did, &info, H5O_INFO_BASIC ); if ( status != 0 ) TEST_ERROR status = H5Dclose( did ); diff --git a/test/dtypes.c b/test/dtypes.c index 1a27634..3253d6c 100644 --- a/test/dtypes.c +++ b/test/dtypes.c @@ -5897,7 +5897,7 @@ test_latest(void) FAIL_STACK_ERROR /* Get information about datatype on disk */ - if(H5Oget_info_by_name(file, compnd_type, &oi, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, compnd_type, &oi, H5O_INFO_HDR, H5P_DEFAULT) < 0) FAIL_STACK_ERROR old_dtype_oh_size = oi.hdr.space.total; @@ -5922,7 +5922,7 @@ test_latest(void) FAIL_STACK_ERROR /* Get information about datatype on disk */ - if(H5Oget_info_by_name(file, compnd_type, &oi, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, compnd_type, &oi, H5O_INFO_HDR, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Check that the object header info is still the same */ @@ -5958,7 +5958,7 @@ test_latest(void) FAIL_STACK_ERROR /* Get information about datatype on disk */ - if(H5Oget_info_by_name(file, compnd_type, &oi, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, compnd_type, &oi, H5O_INFO_HDR, H5P_DEFAULT) < 0) FAIL_STACK_ERROR new_dtype_oh_size = oi.hdr.space.total; @@ -5987,7 +5987,7 @@ test_latest(void) FAIL_STACK_ERROR /* Get information about datatype on disk */ - if(H5Oget_info_by_name(file, compnd_type, &oi, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, compnd_type, &oi, H5O_INFO_HDR, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Check that the object header info is still the same */ @@ -36,8 +36,8 @@ static char filename[6][1024]; /* Global property lists - just copies of the defaults (necessary to use * internal functions */ -hid_t fcpl_id = -1; -hid_t fapl_id = -1; +hid_t fcpl_id = H5I_INVALID_HID; +hid_t fapl_id = H5I_INVALID_HID; /*------------------------------------------------------------------------- @@ -68,8 +68,9 @@ test_single(void) TESTING("single EFC"); - /* Set EFC size to 3. Do this instead of H5F_efc_create() so we can pass - * a file pointer to H5F__efc_open containing the EFC. */ + /* Set EFC size to 3. Do this instead of H5F__efc_create() so we can pass + * a file pointer to H5F__efc_open containing the EFC. + */ if(H5Pset_elink_file_cache_size(fapl_id, 3) < 0) TEST_ERROR @@ -84,8 +85,9 @@ test_single(void) /* Test 1: Open file 1 through EFC, close, then open normally, verify ref - * count = 2, release EFC, verify ref count = 1. Verifies a file can be - * held open by the EFC. */ + * count = 2, release EFC, verify ref count = 1. Verifies a file can be + * held open by the EFC. + */ if(NULL == (f1 = H5F__efc_open(f0, filename[1], H5F_ACC_RDWR | H5F_ACC_CREAT | H5F_ACC_TRUNC, fcpl_id, fapl_id))) FAIL_STACK_ERROR @@ -502,17 +504,19 @@ test_graph_nocycle(void) TESTING("graph of EFCs without cycles"); - /* Set EFC size to 8. Do this instead of H5F_efc_create() so we can pass - * a file pointer to H5F__efc_open containing the EFC. Set to a high number - * because we don't test the EFC becoming too large in this test. */ + /* Set EFC size to 8. Do this instead of H5F__efc_create() so we can pass + * a file pointer to H5F__efc_open containing the EFC. Set to a high number + * because we don't test the EFC becoming too large in this test. + */ if(H5Pset_elink_file_cache_size(fapl_id, 8) < 0) TEST_ERROR - /* Test 1: Simple 3 file chain. Open file 1 through file 0, then open file - * 2 through file 1. Release file 0's EFC and verify that file 2 gets its - * ref count reduced (implying file 1 was closed). Do the same with the - * opening order reversed. */ + /* Test 1: Simple 3 file chain. Open file 1 through file 0, then open file + * 2 through file 1. Release file 0's EFC and verify that file 2 gets its + * ref count reduced (implying file 1 was closed). Do the same with the + * opening order reversed. + */ if(NULL == (f0 = H5F_open(filename[0], H5F_ACC_RDWR | H5F_ACC_CREAT | H5F_ACC_TRUNC, fcpl_id, fapl_id))) FAIL_STACK_ERROR @@ -847,15 +851,17 @@ test_graph_cycle(void) TESTING("graph of EFCs with cycles"); - /* Set EFC size to 8. Do this instead of H5F_efc_create() so we can pass - * a file pointer to H5F__efc_open containing the EFC. Set to a high number - * because we don't test the EFC becoming too large in this test. */ + /* Set EFC size to 8. Do this instead of H5F__efc_create() so we can pass + * a file pointer to H5F__efc_open containing the EFC. Set to a high number + * because we don't test the EFC becoming too large in this test. + */ if(H5Pset_elink_file_cache_size(fapl_id, 8) < 0) TEST_ERROR - /* Test 1: File caches itself. Verify that closing the file causes it to be - * actually closed, and there is no other unexpected behavior. */ + /* Test 1: File caches itself. Verify that closing the file causes it to be + * actually closed, and there is no other unexpected behavior. + */ if(NULL == (f0 = H5F_open(filename[0], H5F_ACC_RDWR | H5F_ACC_CREAT | H5F_ACC_TRUNC, fcpl_id, fapl_id))) FAIL_STACK_ERROR diff --git a/test/flushrefresh.c b/test/flushrefresh.c index 0775dee..4196d85 100644 --- a/test/flushrefresh.c +++ b/test/flushrefresh.c @@ -848,7 +848,7 @@ herr_t flush_verification(const char * obj_pathname, const char * expected) H5E_BEGIN_TRY { fid = H5Fopen(FILENAME, H5F_ACC_SWMR_READ, H5P_DEFAULT); oid = H5Oopen(fid, obj_pathname, H5P_DEFAULT); - status = H5Oget_info(oid, &oinfo); + status = H5Oget_info2(oid, &oinfo, H5O_INFO_BASIC); } H5E_END_TRY; /* Compare to expected result */ @@ -989,7 +989,7 @@ herr_t refresh_verification(const char * obj_pathname) if((oid = H5Oopen(fid, obj_pathname, H5P_DEFAULT)) < 0) PROCESS_ERROR; /* Get Object info */ - if((status = H5Oget_info(oid, &flushed_oinfo)) < 0) PROCESS_ERROR; + if((status = H5Oget_info2(oid, &flushed_oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS|H5O_INFO_HDR)) < 0) PROCESS_ERROR; /* Make sure there are no attributes on the object. This is just a sanity check to ensure we didn't erroneously flush the attribute before @@ -1008,7 +1008,7 @@ herr_t refresh_verification(const char * obj_pathname) /* Get object info again. This will NOT reflect what's on disk, only what's in the cache. Thus, all values will be unchanged from above, despite newer information being on disk. */ - if((status = H5Oget_info(oid, &refreshed_oinfo)) < 0) PROCESS_ERROR; + if((status = H5Oget_info2(oid, &refreshed_oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS|H5O_INFO_HDR)) < 0) PROCESS_ERROR; /* Verify that before doing a refresh, getting the object info returns stale information. (i.e., unchanged from above, despite new info on disk). */ @@ -1046,7 +1046,7 @@ herr_t refresh_verification(const char * obj_pathname) } /* end else */ /* Get object info. This should now accurately reflect the refreshed object on disk. */ - if((status = H5Oget_info(oid, &refreshed_oinfo)) < 0) PROCESS_ERROR; + if((status = H5Oget_info2(oid, &refreshed_oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS|H5O_INFO_HDR)) < 0) PROCESS_ERROR; /* Confirm following (first 4) attributes are the same: */ /* Confirm following (last 4) attributes are different */ diff --git a/test/genall5.c b/test/genall5.c index e3a9c96..37bab7a 100644 --- a/test/genall5.c +++ b/test/genall5.c @@ -650,7 +650,7 @@ vrfy_ns_grp_c(hid_t fid, const char *group_name, unsigned nlinks) HDassert(H5L_TYPE_HARD == lnk_info.type); memset(&root_oinfo, 0, sizeof(root_oinfo)); - ret = H5Oget_info(fid, &root_oinfo); + ret = H5Oget_info2(fid, &root_oinfo, H5O_INFO_BASIC); if ( ret < 0 ) { @@ -1130,7 +1130,7 @@ vrfy_ns_grp_d(hid_t fid, const char *group_name, unsigned nlinks) HDassert(H5L_TYPE_HARD == lnk_info.type); memset(&root_oinfo, 0, sizeof(root_oinfo)); - ret = H5Oget_info(fid, &root_oinfo); + ret = H5Oget_info2(fid, &root_oinfo, H5O_INFO_BASIC); if ( ret < 0 ) { pass = FALSE; @@ -1825,7 +1825,7 @@ vrfy_os_grp_n(hid_t fid, const char *group_name, int proc_num, unsigned nlinks) HDassert(H5L_TYPE_HARD == lnk_info.type); memset(&root_oinfo, 0, sizeof(root_oinfo)); - ret = H5Oget_info(fid, &root_oinfo); + ret = H5Oget_info2(fid, &root_oinfo, H5O_INFO_BASIC); if ( ret < 0 ) { diff --git a/test/getname.c b/test/getname.c index c3f3c54..873ceb9 100644 --- a/test/getname.c +++ b/test/getname.c @@ -2390,7 +2390,7 @@ test_main(hid_t file_id, hid_t fapl) if((size = H5Iget_name(dtype_anon, NULL,0)) != 0) TEST_ERROR /* Store the address of the datatype for later use */ - if(H5Oget_info(dtype_anon, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(dtype_anon, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR /* Update the reference count to dtype_anon to preserve the datatype */ if(H5Oincr_refcount(dtype_anon) < 0) TEST_ERROR @@ -2937,7 +2937,7 @@ test_elinks(hid_t fapl) /* Query the external link object's name */ *name = '\0'; name_cached = FALSE; - namelen = H5I_get_name_test(group, (char*)name, sizeof(name), &name_cached); + namelen = H5I__get_name_test(group, (char*)name, sizeof(name), &name_cached); if(!((HDstrcmp(name, "/Group2") == 0) && (namelen == 7) && name_cached)) TEST_ERROR @@ -2952,7 +2952,7 @@ test_elinks(hid_t fapl) /* Query the external link to external link object's name */ *name = '\0'; name_cached = FALSE; - namelen = H5I_get_name_test(group, (char*)name, sizeof(name), &name_cached); + namelen = H5I__get_name_test(group, (char*)name, sizeof(name), &name_cached); if(!((HDstrcmp(name, "/Group2") == 0) && (namelen == 7) && name_cached)) TEST_ERROR diff --git a/test/h5test.c b/test/h5test.c index bbdd58b..687f594 100644 --- a/test/h5test.c +++ b/test/h5test.c @@ -1694,8 +1694,8 @@ h5_verify_cached_stabs(const char *base_name[], hid_t fapl) continue; } /* end if */ - if(H5Ovisit(file, H5_INDEX_NAME, H5_ITER_NATIVE, - h5_verify_cached_stabs_cb, NULL) < 0) + if(H5Ovisit2(file, H5_INDEX_NAME, H5_ITER_NATIVE, + h5_verify_cached_stabs_cb, NULL, H5O_INFO_BASIC) < 0) goto error; if(H5Fclose(file) < 0) diff --git a/test/links.c b/test/links.c index 4e88af5..fb2c75a 100644 --- a/test/links.c +++ b/test/links.c @@ -541,8 +541,8 @@ cklinks(hid_t fapl, hbool_t new_format) if((file = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) FAIL_STACK_ERROR /* Hard link */ - if(H5Oget_info_by_name(file, "d1", &oinfo1, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file, "grp1/hard", &oinfo2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file, "d1", &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file, "grp1/hard", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5O_TYPE_DATASET != oinfo2.type) { H5_FAILED(); printf(" %d: Unexpected object type should have been a dataset\n", __LINE__); @@ -577,7 +577,7 @@ cklinks(hid_t fapl, hbool_t new_format) } /* end if */ /* Symbolic link */ - if(H5Oget_info_by_name(file, "grp1/soft", &oinfo2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file, "grp1/soft", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5O_TYPE_DATASET != oinfo2.type) { H5_FAILED(); printf(" %d: Unexpected object type should have been a dataset\n", __LINE__); @@ -599,7 +599,7 @@ cklinks(hid_t fapl, hbool_t new_format) /* Dangling link */ H5E_BEGIN_TRY { - status = H5Oget_info_by_name(file, "grp1/dangle", &oinfo2, H5P_DEFAULT); + status = H5Oget_info_by_name2(file, "grp1/dangle", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(status >= 0) { H5_FAILED(); @@ -626,7 +626,7 @@ cklinks(hid_t fapl, hbool_t new_format) /* Recursive link */ H5E_BEGIN_TRY { - status = H5Oget_info_by_name(file, "grp1/recursive", &oinfo2, H5P_DEFAULT); + status = H5Oget_info_by_name2(file, "grp1/recursive", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(status >= 0) { H5_FAILED(); @@ -696,11 +696,11 @@ ck_new_links(hid_t fapl, hbool_t new_format) if((file = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR /* Get hard link info */ - if(H5Oget_info_by_name(file, "/grp1/dataset2", &oi_dset, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, "/grp1/dataset2", &oi_dset, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(file, "/grp1/hard1", &oi_hard1, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, "/grp1/hard1", &oi_hard1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(file, "/grp2/hard2", &oi_hard2, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, "/grp2/hard2", &oi_hard2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR /* Check hard links */ @@ -1504,7 +1504,7 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) /* Get the group's link's information */ if(H5Lget_info(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(file_id, "group", &oinfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR old_cset = linfo.cset; if(old_cset != H5T_CSET_UTF8) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR @@ -1523,7 +1523,7 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) /* Get the link's character set & modification time . They should be unchanged */ if(H5Lget_info(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(file_id, "group", &oinfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR if(old_cset != linfo.cset) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR @@ -1531,7 +1531,7 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) /* Create a new link to the group. It should have a different creation order value but the same modification time */ if(H5Lcreate_hard(file_id, "group", file_id, "group2", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(file_id, "group2", &oinfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group2", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR if(H5Lget_info(file_id, "group2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(old_corder == linfo.corder) TEST_ERROR @@ -1544,7 +1544,7 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) * should not change. */ if(H5Lcopy(file_id, "group", file_id, "group_copied", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(file_id, "group_copied", &oinfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group_copied", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR if(H5Lget_info(file_id, "group_copied", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR @@ -1555,7 +1555,7 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) /* Move the link with the default property list. */ if(H5Lmove(file_id, "group_copied", file_id, "group_copied2", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(file_id, "group_copied2", &oinfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group_copied2", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR if(H5Lget_info(file_id, "group_copied2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR @@ -1565,7 +1565,7 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) if(linfo.cset == H5T_CSET_UTF8) TEST_ERROR /* Check that the original link is unchanged */ - if(H5Oget_info_by_name(file_id, "group", &oinfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR if(H5Lget_info(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR @@ -1576,7 +1576,7 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) * Its creation order value will change, but modification time should not * change. */ if(H5Lmove(file_id, "group", file_id, "group_moved", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(file_id, "group_moved", &oinfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group_moved", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR if(H5Lget_info(file_id, "group_moved", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR @@ -1587,7 +1587,7 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) /* Move the link again using the default property list. */ if(H5Lmove(file_id, "group_moved", file_id, "group_moved_again", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(file_id, "group_moved_again", &oinfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group_moved_again", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR if(H5Lget_info(file_id, "group_moved_again", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR @@ -5377,7 +5377,7 @@ external_link_query(hid_t fapl, hbool_t new_format) if(HDstrcmp(object_name, "/dst")) TEST_ERROR /* Query information about object that external link points to */ - if(H5Oget_info_by_name(fid, "src", &oi, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(fid, "src", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5O_TYPE_GROUP != oi.type) { H5_FAILED(); HDputs(" Unexpected object type - should have been a group"); @@ -6110,8 +6110,8 @@ external_link_closing(hid_t fapl, hbool_t new_format) /* Test that getting info works */ if(H5Lget_info(fid1, "elink/elink/elink/type1", &li, H5P_DEFAULT) < 0) TEST_ERROR if(H5Lget_info(fid1, "elink/elink/elink", &li, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(fid1, "elink/elink/elink/type1", &oi, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(fid1, "elink/elink/elink", &oi, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(fid1, "elink/elink/elink/type1", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(fid1, "elink/elink/elink", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR /* Test move */ if(H5Lmove(fid1, "elink/elink/elink/group1", fid1, @@ -6198,7 +6198,7 @@ external_link_closing(hid_t fapl, hbool_t new_format) if(H5Gclose(gid) < 0) TEST_ERROR if((gid = H5Gcreate2(fid1, "elink/elink2/group2/group3/group4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if(H5Gclose(gid) < 0) TEST_ERROR - if(H5Oget_info_by_name(fid1, "elink/elink2/group2/group3/group4", &oi, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(fid1, "elink/elink2/group2/group3/group4", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR /* Add a few regular groups and a soft link in file2 using intermediate group creation */ if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) TEST_ERROR @@ -9608,13 +9608,13 @@ obj_visit(hid_t fapl, hbool_t new_format) /* Visit all the objects reachable from the root group (with file ID) */ udata.idx = 0; udata.info = new_format ? ovisit0_new : ovisit0_old; - if(H5Ovisit(fid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata) < 0) FAIL_STACK_ERROR + if(H5Ovisit2(fid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR /* Visit all the objects reachable from the root group (with group ID) */ if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit0_new : ovisit0_old; - if(H5Ovisit(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata) < 0) FAIL_STACK_ERROR + if(H5Ovisit2(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR @@ -9622,13 +9622,13 @@ obj_visit(hid_t fapl, hbool_t new_format) if((gid = H5Gopen2(fid, "/Group1", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit1_new : ovisit1_old; - if(H5Ovisit(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata) < 0) FAIL_STACK_ERROR + if(H5Ovisit2(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR if((gid = H5Gopen2(fid, "/Group1/Group2", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit2_new : ovisit2_old; - if(H5Ovisit(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata) < 0) FAIL_STACK_ERROR + if(H5Ovisit2(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR @@ -9678,36 +9678,36 @@ obj_visit_by_name(hid_t fapl, hbool_t new_format) /* Visit all the objects reachable from the root group (with file ID) */ udata.idx = 0; udata.info = new_format ? ovisit0_new : ovisit0_old; - if(H5Ovisit_by_name(fid, "/", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name2(fid, "/", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Visit all the objects reachable from the root group (with group ID) */ if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit0_new : ovisit0_old; - if(H5Ovisit_by_name(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR /* Visit all the objects reachable from each internal group */ udata.idx = 0; udata.info = new_format ? ovisit1_new : ovisit1_old; - if(H5Ovisit_by_name(fid, "/Group1", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name2(fid, "/Group1", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if((gid = H5Gopen2(fid, "/Group1", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit1_new : ovisit1_old; - if(H5Ovisit_by_name(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit2_new : ovisit2_old; - if(H5Ovisit_by_name(fid, "/Group1/Group2", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name2(fid, "/Group1/Group2", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if((gid = H5Gopen2(fid, "/Group1/Group2", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit2_new : ovisit2_old; - if(H5Ovisit_by_name(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR @@ -9784,15 +9784,15 @@ obj_visit_stop(hid_t fapl, hbool_t new_format) * returns H5_ITER_STOP */ nvisited = 0; - if((ret = H5Ovisit(fid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_stop_cb, &nvisited)) < 0) + if((ret = H5Ovisit2(fid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_stop_cb, &nvisited, H5O_INFO_BASIC)) < 0) FAIL_STACK_ERROR if(ret != H5_ITER_STOP) TEST_ERROR if(nvisited != 1) TEST_ERROR /* Same test with H5Ovisit_by_name */ nvisited = 0; - if((ret = H5Ovisit_by_name(fid, "/", H5_INDEX_NAME, H5_ITER_INC, visit_obj_stop_cb, - &nvisited, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if((ret = H5Ovisit_by_name2(fid, "/", H5_INDEX_NAME, H5_ITER_INC, visit_obj_stop_cb, + &nvisited, H5O_INFO_BASIC, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR if(ret != H5_ITER_STOP) TEST_ERROR if(nvisited != 1) TEST_ERROR @@ -11596,7 +11596,7 @@ link_info_by_idx_old(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info(group_id2, &oi) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR objno[u] = oi.addr; /* Close group */ @@ -12095,7 +12095,7 @@ delete_by_idx_old(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info(group_id2, &oi) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR objno[u] = oi.addr; /* Close group */ @@ -12168,7 +12168,7 @@ delete_by_idx_old(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info(group_id2, &oi) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR objno[u] = oi.addr; /* Close group */ @@ -13163,7 +13163,7 @@ open_by_idx_check(hid_t main_group_id, hid_t soft_group_id, hid_t mount_file_id, if((obj_id = H5Oopen_by_idx(group_id, ".", idx_type, order, (hsize_t)u, H5P_DEFAULT)) < 0) TEST_ERROR /* Get the object's information */ - if(H5Oget_info(obj_id, &oi) < 0) TEST_ERROR + if(H5Oget_info2(obj_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR /* Check that the object is the correct one */ if(order == H5_ITER_INC) { @@ -13189,7 +13189,7 @@ open_by_idx_check(hid_t main_group_id, hid_t soft_group_id, hid_t mount_file_id, */ /* Get the address of the root group in the file to mount */ - if(H5Oget_info(mount_file_id, &oi) < 0) TEST_ERROR + if(H5Oget_info2(mount_file_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR mnt_root_addr = oi.addr; /* Mount a file over a group in main group */ @@ -13201,7 +13201,7 @@ open_by_idx_check(hid_t main_group_id, hid_t soft_group_id, hid_t mount_file_id, if((obj_id = H5Oopen_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)mnt_idx, H5P_DEFAULT)) < 0) TEST_ERROR /* Get the object's information */ - if(H5Oget_info(obj_id, &oi) < 0) TEST_ERROR + if(H5Oget_info2(obj_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR /* Check that the object is the root of the mounted file and not in the previous file */ if(H5F_addr_ne(oi.addr, mnt_root_addr)) TEST_ERROR @@ -13352,7 +13352,7 @@ open_by_idx(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info(group_id2, &oi) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR objno[u] = oi.addr; /* Close group created */ @@ -13387,7 +13387,7 @@ open_by_idx(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info(group_id2, &oi) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR objno[u] = oi.addr; /* Close group created */ @@ -13529,7 +13529,7 @@ open_by_idx_old(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info(group_id2, &oi) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR objno[u] = oi.addr; /* Close group created */ @@ -13623,14 +13623,14 @@ object_info_check(hid_t main_group_id, hid_t soft_group_id, H5_index_t idx_type, sprintf(objname, "filler %02u", u); /* Query the object's information, by name */ - if(H5Oget_info_by_name(group_id, objname, &oinfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(group_id, objname, &oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS, H5P_DEFAULT) < 0) TEST_ERROR /* Check that the object is the correct one */ if(H5F_addr_ne(oinfo.addr, objno[u])) TEST_ERROR if(H5F_addr_ne(oinfo.num_attrs, u)) TEST_ERROR /* Query the object's information, by index */ - if(H5Oget_info_by_idx(group_id, ".", idx_type, order, (hsize_t)u, &oinfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_idx2(group_id, ".", idx_type, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS, H5P_DEFAULT) < 0) TEST_ERROR /* Check that the object is the correct one */ if(order == H5_ITER_INC) { @@ -13772,7 +13772,7 @@ object_info(hid_t fapl) /* Check for out of bound query by index on empty group */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -13788,7 +13788,7 @@ object_info(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info(group_id2, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR objno[u] = oinfo.addr; /* Create attributes on new object */ @@ -13816,7 +13816,7 @@ object_info(hid_t fapl) /* Check for out of bound query by index */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -13836,7 +13836,7 @@ object_info(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info(group_id2, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR objno[u] = oinfo.addr; /* Create attributes on new object */ @@ -13864,7 +13864,7 @@ object_info(hid_t fapl) /* Check for out of bound query by index */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -13969,7 +13969,7 @@ object_info_old(hid_t fapl) /* Check for out of bound query by index on empty group */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -13985,7 +13985,7 @@ object_info_old(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info(group_id2, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR objno[u] = oinfo.addr; /* Create attributes on new object */ @@ -14013,13 +14013,13 @@ object_info_old(hid_t fapl) /* Check for out of bound query by index */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR /* Check for creation order index query */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, order, (hsize_t)(u - 1), &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, order, (hsize_t)(u - 1), &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -14779,8 +14779,8 @@ timestamps(hid_t fapl) if(track_times != TRUE) TEST_ERROR /* Query the object information for each group */ - if(H5Oget_info(group_id, &oinfo) < 0) TEST_ERROR - if(H5Oget_info(group_id2, &oinfo2) < 0) TEST_ERROR + if(H5Oget_info2(group_id, &oinfo, H5O_INFO_TIME|H5O_INFO_HDR) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oinfo2, H5O_INFO_TIME|H5O_INFO_HDR) < 0) TEST_ERROR /* Sanity check object information for each group */ if(oinfo.atime != 0) TEST_ERROR @@ -14826,8 +14826,8 @@ timestamps(hid_t fapl) if(track_times != TRUE) TEST_ERROR /* Query the object information for each group */ - if(H5Oget_info(group_id, &oinfo) < 0) TEST_ERROR - if(H5Oget_info(group_id2, &oinfo2) < 0) TEST_ERROR + if(H5Oget_info2(group_id, &oinfo, H5O_INFO_TIME|H5O_INFO_HDR) < 0) TEST_ERROR + if(H5Oget_info2(group_id2, &oinfo2, H5O_INFO_TIME|H5O_INFO_HDR) < 0) TEST_ERROR /* Sanity check object information for each group */ if(oinfo.atime != 0) TEST_ERROR @@ -258,13 +258,13 @@ test_mf_eoa(const char *env_h5_drvr, hid_t fapl) if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); type = H5FD_MEM_SUPER; addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); if (new_ma_addr != ma_addr) TEST_ERROR @@ -274,7 +274,7 @@ test_mf_eoa(const char *env_h5_drvr, hid_t fapl) addr2 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE50); /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); if (new_ma_addr != ma_addr) TEST_ERROR @@ -403,7 +403,7 @@ test_mf_eoa_shrink(const char *env_h5_drvr, hid_t fapl) if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); type = H5FD_MEM_SUPER; addr = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); @@ -412,7 +412,7 @@ test_mf_eoa_shrink(const char *env_h5_drvr, hid_t fapl) TEST_ERROR /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if (new_ma_addr != ma_addr) TEST_ERROR if (new_ma_size != ma_size) TEST_ERROR @@ -435,14 +435,14 @@ test_mf_eoa_shrink(const char *env_h5_drvr, hid_t fapl) if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); /* should succeed */ if(H5MF_try_shrink(f, type, addr, (hsize_t)TBLOCK_SIZE30) <= 0) TEST_ERROR /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); if(new_ma_addr != ma_addr) TEST_ERROR if(new_ma_size != ma_size) @@ -480,7 +480,7 @@ test_mf_eoa_shrink(const char *env_h5_drvr, hid_t fapl) if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); addr = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); @@ -492,7 +492,7 @@ test_mf_eoa_shrink(const char *env_h5_drvr, hid_t fapl) TEST_ERROR /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); if (new_ma_addr != ma_addr) TEST_ERROR if (new_ma_size != ma_size) TEST_ERROR @@ -529,14 +529,14 @@ test_mf_eoa_shrink(const char *env_h5_drvr, hid_t fapl) if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); /* should not succeed in shrinking */ if(H5MF_try_shrink(f, type, addr, (hsize_t)TBLOCK_SIZE30 + 10) > 0) TEST_ERROR /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); if (new_ma_addr != ma_addr) TEST_ERROR if (new_ma_size != ma_size) TEST_ERROR @@ -572,14 +572,14 @@ test_mf_eoa_shrink(const char *env_h5_drvr, hid_t fapl) if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); /* should succeed in shrinking */ if(H5MF_try_shrink(f, type, addr+10, (hsize_t)(TBLOCK_SIZE30 - 10)) <= 0) TEST_ERROR /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &ma_size); if(new_ma_addr != ma_addr) TEST_ERROR if(new_ma_size != ma_size) @@ -684,7 +684,7 @@ test_mf_eoa_extend(const char *env_h5_drvr, hid_t fapl) if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); type = H5FD_MEM_SUPER; addr = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); @@ -692,7 +692,7 @@ test_mf_eoa_extend(const char *env_h5_drvr, hid_t fapl) TEST_ERROR /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if (new_ma_addr != ma_addr) TEST_ERROR @@ -722,7 +722,7 @@ test_mf_eoa_extend(const char *env_h5_drvr, hid_t fapl) TEST_ERROR /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if (new_ma_addr != ma_addr) TEST_ERROR @@ -762,7 +762,7 @@ test_mf_eoa_extend(const char *env_h5_drvr, hid_t fapl) if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); type = H5FD_MEM_SUPER; addr = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); @@ -771,7 +771,7 @@ test_mf_eoa_extend(const char *env_h5_drvr, hid_t fapl) TEST_ERROR /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if(new_ma_addr != ma_addr) TEST_ERROR @@ -782,7 +782,7 @@ test_mf_eoa_extend(const char *env_h5_drvr, hid_t fapl) TEST_ERROR /* nothing should be changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if (new_ma_addr != ma_addr) TEST_ERROR @@ -1186,7 +1186,7 @@ test_mf_fs_alloc_free(hid_t fapl) TEST_ERROR /* Create section A */ - sect_node = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); + sect_node = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); /* Add section A to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node)) @@ -1263,7 +1263,7 @@ test_mf_fs_alloc_free(hid_t fapl) TEST_ERROR /* Create section A */ - sect_node = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); + sect_node = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); /* Add section A to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node)) @@ -1338,7 +1338,7 @@ test_mf_fs_alloc_free(hid_t fapl) TEST_ERROR /* Create section A */ - sect_node = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); + sect_node = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); /* Add section A to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node)) @@ -1511,7 +1511,7 @@ test_mf_fs_extend(hid_t fapl) TEST_ERROR /* Create section A */ - sect_node1 = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); + sect_node1 = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); /* Add section A to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node1)) @@ -1540,7 +1540,7 @@ test_mf_fs_extend(hid_t fapl) TEST_ERROR /* Create section B */ - sect_node2 = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR100, (hsize_t)TBLOCK_SIZE50); + sect_node2 = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR100, (hsize_t)TBLOCK_SIZE50); /* Add section B to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node2)) @@ -1619,7 +1619,7 @@ test_mf_fs_extend(hid_t fapl) TEST_ERROR /* Create section A */ - sect_node1 = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); + sect_node1 = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); /* Add section A to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node1)) @@ -1648,7 +1648,7 @@ test_mf_fs_extend(hid_t fapl) TEST_ERROR /* Create section B */ - sect_node2 = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR100, (hsize_t)TBLOCK_SIZE50); + sect_node2 = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR100, (hsize_t)TBLOCK_SIZE50); /* Add section B to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node2)) @@ -1721,7 +1721,7 @@ test_mf_fs_extend(hid_t fapl) TEST_ERROR /* Create section A */ - sect_node1 = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); + sect_node1 = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE30); /* Add section A to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node1)) @@ -1750,7 +1750,7 @@ test_mf_fs_extend(hid_t fapl) TEST_ERROR /* Create section B */ - sect_node2 = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR100, (hsize_t)TBLOCK_SIZE50); + sect_node2 = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR100, (hsize_t)TBLOCK_SIZE50); /* Add section B to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node2)) @@ -1823,7 +1823,7 @@ test_mf_fs_extend(hid_t fapl) TEST_ERROR /* Create section A */ - sect_node1 = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)(TBLOCK_SIZE30-10)); + sect_node1 = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)(TBLOCK_SIZE30-10)); /* Add section A of size=20 to free-space */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node1)) @@ -1852,7 +1852,7 @@ test_mf_fs_extend(hid_t fapl) TEST_ERROR /* Create section B */ - sect_node2 = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR100, (hsize_t)TBLOCK_SIZE50); + sect_node2 = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR100, (hsize_t)TBLOCK_SIZE50); /* Add section B to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node2)) @@ -1997,10 +1997,10 @@ test_mf_fs_absorb(const char *env_h5_drvr, hid_t fapl) /* Allocate a section from meta_aggr */ addr = H5MF_alloc(f, H5FD_MEM_SUPER, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); /* Create a section */ - sect_node = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)(ma_addr+ma_size), (hsize_t)TBLOCK_SIZE2048); + sect_node = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)(ma_addr+ma_size), (hsize_t)TBLOCK_SIZE2048); /* Add a section to free-space that adjoins end of the aggregator */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node)) @@ -2052,13 +2052,13 @@ test_mf_fs_absorb(const char *env_h5_drvr, hid_t fapl) /* Allocate a section from meta_aggr */ addr = H5MF_alloc(f, H5FD_MEM_SUPER, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); /* Allocate a section from sdata_aggr */ saddr = H5MF_alloc(f, H5FD_MEM_DRAW, (hsize_t)TBLOCK_SIZE50); /* Add a section to free-space that adjoins the beginning of meta_aggr */ - sect_node = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)addr, (hsize_t)TBLOCK_SIZE30); + sect_node = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)addr, (hsize_t)TBLOCK_SIZE30); /* When adding, meta_aggr is absorbed onto the end of the section */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node)) @@ -2172,7 +2172,7 @@ test_mf_aggr_alloc1(const char *env_h5_drvr, hid_t fapl) if((addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30)) == HADDR_UNDEF) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR @@ -2180,7 +2180,7 @@ test_mf_aggr_alloc1(const char *env_h5_drvr, hid_t fapl) if((addr2 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE50)) == HADDR_UNDEF) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr2+TBLOCK_SIZE50) != ma_addr) TEST_ERROR if(ma_size != (TBLOCK_SIZE2048 - (TBLOCK_SIZE30 + TBLOCK_SIZE50))) @@ -2311,13 +2311,13 @@ test_mf_aggr_alloc2(const char *env_h5_drvr, hid_t fapl) type = H5FD_MEM_SUPER; addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR addr2 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr2+TBLOCK_SIZE50) != ma_addr) TEST_ERROR @@ -2326,7 +2326,7 @@ test_mf_aggr_alloc2(const char *env_h5_drvr, hid_t fapl) addr3 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE2058); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr3+TBLOCK_SIZE2058) != ma_addr) TEST_ERROR @@ -2468,14 +2468,14 @@ test_mf_aggr_alloc3(const char *env_h5_drvr, hid_t fapl) type = H5FD_MEM_SUPER; addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if ((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR /* Allocate second block from meta_aggr */ addr2 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr2+TBLOCK_SIZE50) != ma_addr) TEST_ERROR @@ -2485,7 +2485,7 @@ test_mf_aggr_alloc3(const char *env_h5_drvr, hid_t fapl) /* Allocate first block from sdata_aggr */ stype = H5FD_MEM_DRAW; saddr1 = H5MF_alloc(f, stype, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if((saddr1+TBLOCK_SIZE30) != sdata_addr) TEST_ERROR if(sdata_size != (TBLOCK_SIZE2048 - TBLOCK_SIZE30)) TEST_ERROR @@ -2493,7 +2493,7 @@ test_mf_aggr_alloc3(const char *env_h5_drvr, hid_t fapl) /* Allocate third block, which is from file allocation not from meta_aggr */ addr3 = H5MF_alloc(f, type, (hsize_t)(TBLOCK_SIZE2058)); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); /* info for meta_aggr shouldn't be changed */ if(addr3 != (sdata_addr+sdata_size)) TEST_ERROR @@ -2502,7 +2502,7 @@ test_mf_aggr_alloc3(const char *env_h5_drvr, hid_t fapl) /* Allocate fourth block, which should be from meta_aggr */ addr4 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr4+TBLOCK_SIZE50) != ma_addr) TEST_ERROR @@ -2631,7 +2631,7 @@ test_mf_aggr_alloc4(const char *env_h5_drvr, hid_t fapl) type = H5FD_MEM_SUPER; addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR @@ -2641,19 +2641,19 @@ test_mf_aggr_alloc4(const char *env_h5_drvr, hid_t fapl) /* Allocate first block from sdata_aggr */ stype = H5FD_MEM_DRAW; saddr1 = H5MF_alloc(f, stype, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if((saddr1+TBLOCK_SIZE30) != sdata_addr) TEST_ERROR /* Allocate second block from sdata_aggr */ saddr2 = H5MF_alloc(f, stype, (hsize_t)(TBLOCK_SIZE2048 - TBLOCK_SIZE30)); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if(saddr2+(TBLOCK_SIZE2048 - TBLOCK_SIZE30) != sdata_addr) TEST_ERROR /* Allocate third block from sdata_aggr */ saddr3 = H5MF_alloc(f, stype, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if((saddr3+TBLOCK_SIZE50) != sdata_addr) TEST_ERROR @@ -2667,12 +2667,12 @@ test_mf_aggr_alloc4(const char *env_h5_drvr, hid_t fapl) TEST_ERROR /* sdata_aggr is reset 0 */ - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if((sdata_addr != 0) && (sdata_size != 0)) TEST_ERROR /* info is unchanged in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if((new_ma_addr != ma_addr) && (new_ma_size != ma_size)) TEST_ERROR @@ -2779,13 +2779,13 @@ test_mf_aggr_alloc5(const char *env_h5_drvr, hid_t fapl) type = H5FD_MEM_SUPER; addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR /* Allocate second block from meta_aggr */ addr2 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if(addr2+TBLOCK_SIZE50 != ma_addr) TEST_ERROR @@ -2794,7 +2794,7 @@ test_mf_aggr_alloc5(const char *env_h5_drvr, hid_t fapl) /* Allocate third block from meta_aggr */ addr3 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE1970); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if(addr3 != ma_addr) TEST_ERROR if((addr3+TBLOCK_SIZE1970) != new_ma_addr) TEST_ERROR @@ -2914,13 +2914,13 @@ test_mf_aggr_alloc6(const char *env_h5_drvr, hid_t fapl) /* Allocate first block from meta_aggr */ addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR /* Allocate second block from meta_aggr */ addr2 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if(addr2+TBLOCK_SIZE50 != ma_addr) TEST_ERROR @@ -2931,14 +2931,14 @@ test_mf_aggr_alloc6(const char *env_h5_drvr, hid_t fapl) stype = H5FD_MEM_DRAW; saddr1 = H5MF_alloc(f, stype, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if((saddr1+TBLOCK_SIZE30) != sdata_addr) TEST_ERROR if(sdata_size != (TBLOCK_SIZE2048 - TBLOCK_SIZE30)) TEST_ERROR /* Allocate third block from meta_aggr */ addr3 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE1970); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if((addr3+TBLOCK_SIZE1970) != new_ma_addr) TEST_ERROR if(addr3 != (sdata_addr+sdata_size)) TEST_ERROR @@ -3079,13 +3079,13 @@ test_mf_aggr_alloc7(const char *env_h5_drvr, hid_t fapl) /* Allocate the first block from meta_aggr */ type = H5FD_MEM_SUPER; addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if ((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR /* Allocate the second block from meta_aggr */ addr2 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if (addr2+TBLOCK_SIZE50 != ma_addr) TEST_ERROR @@ -3095,14 +3095,14 @@ test_mf_aggr_alloc7(const char *env_h5_drvr, hid_t fapl) /* Allocate the first block from sdata_aggr */ stype = H5FD_MEM_DRAW; saddr1 = H5MF_alloc(f, stype, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if ((saddr1+TBLOCK_SIZE30) != sdata_addr) TEST_ERROR /* Allocate the second block from sdata_aggr */ saddr2 = H5MF_alloc(f, stype, (hsize_t)TBLOCK_SIZE2048 - TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if ((saddr2+(TBLOCK_SIZE2048 - TBLOCK_SIZE30)) != sdata_addr) TEST_ERROR if (sdata_size != 0) TEST_ERROR @@ -3110,7 +3110,7 @@ test_mf_aggr_alloc7(const char *env_h5_drvr, hid_t fapl) /* Allocate the third block from sdata_aggr */ saddr3 = H5MF_alloc(f, stype, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if ((saddr3+TBLOCK_SIZE50) != sdata_addr) TEST_ERROR if (sdata_size != (TBLOCK_SIZE2048 - TBLOCK_SIZE50)) @@ -3118,14 +3118,14 @@ test_mf_aggr_alloc7(const char *env_h5_drvr, hid_t fapl) /* Allocate the third block from meta_aggr */ addr3 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE1970); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if (addr3 != sdata_addr) TEST_ERROR if ((addr3 + TBLOCK_SIZE1970) != ma_addr) TEST_ERROR if (ma_size != (TBLOCK_SIZE2048 - TBLOCK_SIZE1970)) TEST_ERROR /* sdata_aggr info is reset to 0 */ - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if (sdata_addr != HADDR_UNDEF) TEST_ERROR if (sdata_size != 0) TEST_ERROR @@ -3242,7 +3242,7 @@ test_mf_aggr_extend(const char *env_h5_drvr, hid_t fapl) /* Allocate the first block from meta_aggr */ type = H5FD_MEM_SUPER; addr = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr+TBLOCK_SIZE30) != ma_addr) TEST_ERROR @@ -3259,7 +3259,7 @@ test_mf_aggr_extend(const char *env_h5_drvr, hid_t fapl) if(!was_extended) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if(new_ma_addr != (addr+TBLOCK_SIZE50)) TEST_ERROR @@ -3275,7 +3275,7 @@ test_mf_aggr_extend(const char *env_h5_drvr, hid_t fapl) if(!was_extended) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if(new_ma_addr != (addr + TBLOCK_SIZE700)) TEST_ERROR @@ -3291,7 +3291,7 @@ test_mf_aggr_extend(const char *env_h5_drvr, hid_t fapl) if(!was_extended) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if (new_ma_addr != (addr + TBLOCK_SIZE2058)) TEST_ERROR @@ -3333,14 +3333,14 @@ test_mf_aggr_extend(const char *env_h5_drvr, hid_t fapl) /* Allocate the first block from meta_aggr */ type = H5FD_MEM_SUPER; addr = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr+TBLOCK_SIZE30) != ma_addr) TEST_ERROR /* Allocate the first block from sdata_aggr */ stype = H5FD_MEM_DRAW; saddr = H5MF_alloc(f, stype, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if((saddr+TBLOCK_SIZE50) != sdata_addr) TEST_ERROR @@ -3356,7 +3356,7 @@ test_mf_aggr_extend(const char *env_h5_drvr, hid_t fapl) if(!was_extended) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if(new_ma_addr != (addr+TBLOCK_SIZE50)) TEST_ERROR @@ -3403,14 +3403,14 @@ test_mf_aggr_extend(const char *env_h5_drvr, hid_t fapl) /* Allocate first block from meta_aggr */ type = H5FD_MEM_SUPER; addr = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if ((addr+TBLOCK_SIZE30) != ma_addr) TEST_ERROR /* Allocate first block from sdata_aggr */ stype = H5FD_MEM_DRAW; saddr = H5MF_alloc(f, stype, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if((saddr+TBLOCK_SIZE50) != sdata_addr) TEST_ERROR @@ -3426,7 +3426,7 @@ test_mf_aggr_extend(const char *env_h5_drvr, hid_t fapl) if(was_extended) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if (new_ma_addr != addr) TEST_ERROR if (new_ma_size != 0) TEST_ERROR @@ -3533,7 +3533,7 @@ test_mf_aggr_absorb(const char *env_h5_drvr, hid_t fapl) /* Allocate block A from meta_aggr */ type = H5FD_MEM_SUPER; addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); ma_addr = new_ma_addr - TBLOCK_SIZE30; if((addr1 + TBLOCK_SIZE30) != new_ma_addr) @@ -3543,7 +3543,7 @@ test_mf_aggr_absorb(const char *env_h5_drvr, hid_t fapl) if(H5MF_try_shrink(f, type, addr1, (hsize_t)TBLOCK_SIZE30) <= 0) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if(new_ma_addr != ma_addr) TEST_ERROR @@ -3580,7 +3580,7 @@ test_mf_aggr_absorb(const char *env_h5_drvr, hid_t fapl) /* Allocate block A from meta_aggr */ type = H5FD_MEM_SUPER; addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR if(ma_size != (TBLOCK_SIZE2048 - TBLOCK_SIZE30)) TEST_ERROR @@ -3589,18 +3589,18 @@ test_mf_aggr_absorb(const char *env_h5_drvr, hid_t fapl) stype = H5FD_MEM_DRAW; saddr1 = H5MF_alloc(f, stype, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), NULL, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), NULL, &sdata_size); /* should succeed */ if(H5MF_try_shrink(f, stype, saddr1, (hsize_t)TBLOCK_SIZE50) <= 0) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &new_sdata_addr, &new_sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &new_sdata_addr, &new_sdata_size); if(new_sdata_addr != saddr1) TEST_ERROR if(new_sdata_size != sdata_size + TBLOCK_SIZE50) TEST_ERROR /* meta_aggr info should be updated because the block is absorbed into the meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if (new_ma_addr != ma_addr) TEST_ERROR if (new_ma_size != (ma_size)) TEST_ERROR @@ -3639,20 +3639,20 @@ test_mf_aggr_absorb(const char *env_h5_drvr, hid_t fapl) /* Allocate block A from meta_aggr */ type = H5FD_MEM_SUPER; addr1 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE30); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR /* Allocate block B from meta_aggr */ addr2 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr2+TBLOCK_SIZE50) != ma_addr) TEST_ERROR /* Allocate block C from meta_aggr */ addr3 = H5MF_alloc(f, type, (hsize_t)(TBLOCK_SIZE30+TBLOCK_SIZE50)); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr3+TBLOCK_SIZE30+TBLOCK_SIZE50) != ma_addr) TEST_ERROR @@ -3661,7 +3661,7 @@ test_mf_aggr_absorb(const char *env_h5_drvr, hid_t fapl) TEST_ERROR /* aggregator info should be the same as before */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if(new_ma_addr != ma_addr) TEST_ERROR H5MF_xfree(f, type, addr1, (hsize_t)TBLOCK_SIZE30); @@ -3799,7 +3799,7 @@ test_mf_align_eoa(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) if(addr1 % alignment) TEST_ERROR /* there should be nothing in the aggregator */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if(ma_addr || ma_size) TEST_ERROR HDmemset(&state, 0, sizeof(H5FS_stat_t)); @@ -3823,7 +3823,7 @@ test_mf_align_eoa(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) if (addr2 % alignment) TEST_ERROR /* there should be nothing in the aggregator */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if(ma_addr || ma_size) TEST_ERROR if(mis_align) { @@ -4054,7 +4054,7 @@ test_mf_align_fs(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) TEST_ERROR /* Create section A */ - sect_node = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)alignment, (hsize_t)TBLOCK_SIZE50); + sect_node = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)alignment, (hsize_t)TBLOCK_SIZE50); /* Add section A to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node)) @@ -4117,7 +4117,7 @@ test_mf_align_fs(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) TEST_ERROR /* Create section A */ - sect_node = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE8000); + sect_node = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE8000); /* Add section A to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node)) @@ -4200,7 +4200,7 @@ test_mf_align_fs(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) TEST_ERROR /* Create section A */ - sect_node = H5MF_sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE700); + sect_node = H5MF__sect_new(H5MF_FSPACE_SECT_SIMPLE, (haddr_t)TBLOCK_ADDR70, (hsize_t)TBLOCK_SIZE700); /* Add section A to free-space manager */ if(H5MF__add_sect(f, H5FD_MEM_SUPER, f->shared->fs_man[H5FD_MEM_SUPER], sect_node)) @@ -4429,7 +4429,7 @@ test_mf_align_alloc1(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state.serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if ((addr1 + TBLOCK_SIZE30) != ma_addr) TEST_ERROR @@ -4452,7 +4452,7 @@ test_mf_align_alloc1(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state.serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr2 + TBLOCK_SIZE50) != ma_addr) TEST_ERROR @@ -4474,7 +4474,7 @@ test_mf_align_alloc1(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state.serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr3 + TBLOCK_SIZE80) != ma_addr) TEST_ERROR @@ -4497,7 +4497,7 @@ test_mf_align_alloc1(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state.serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr4 + TBLOCK_SIZE1970) != ma_addr) TEST_ERROR @@ -4685,7 +4685,7 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[type].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr1 + TBLOCK_SIZE30) != ma_addr) TEST_ERROR @@ -4707,7 +4707,7 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[type].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr2 + TBLOCK_SIZE50) != ma_addr) TEST_ERROR @@ -4743,8 +4743,8 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* Verify that the allocated block is aligned */ if (saddr1 % alignment) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if(sdata_addr != (saddr1 + TBLOCK_SIZE30)) TEST_ERROR @@ -4776,7 +4776,7 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[type].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr3 + TBLOCK_SIZE80) != ma_addr) TEST_ERROR @@ -5024,7 +5024,7 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[type].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if ((addr1 + TBLOCK_SIZE30) != ma_addr) TEST_ERROR @@ -5046,7 +5046,7 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[type].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr2 + TBLOCK_SIZE50) != ma_addr) TEST_ERROR @@ -5081,7 +5081,7 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[stype].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if(sdata_addr != (saddr1+TBLOCK_SIZE30)) TEST_ERROR /* calculate fragment for alignment of block 50 in sdata_aggr */ @@ -5102,7 +5102,7 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[stype].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if(sdata_addr != (saddr2 + TBLOCK_SIZE50)) TEST_ERROR /* calculate fragment for alignment of block 80 in sdata_aggr */ @@ -5123,7 +5123,7 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[stype].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if ((saddr3 + TBLOCK_SIZE80) != sdata_addr) TEST_ERROR @@ -5157,7 +5157,7 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[type].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr3 + TBLOCK_SIZE1034) != ma_addr) TEST_ERROR @@ -5329,7 +5329,7 @@ test_mf_align_alloc4(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state.serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); saved_ma_size = ma_size; if((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR @@ -5351,7 +5351,7 @@ test_mf_align_alloc4(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state.serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr2 + TBLOCK_SIZE2058) != ma_addr) TEST_ERROR @@ -5532,7 +5532,7 @@ test_mf_align_alloc5(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* Verify that the allocated block is aligned */ if(addr1 % alignment) TEST_ERROR - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if((addr1 + TBLOCK_SIZE30) != ma_addr) TEST_ERROR @@ -5563,7 +5563,7 @@ test_mf_align_alloc5(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[stype].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if((saddr1+TBLOCK_SIZE30) != sdata_addr) TEST_ERROR /* calculate fragment for alignment of block 2058 from meta_aggr */ @@ -5596,12 +5596,12 @@ test_mf_align_alloc5(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) } /* nothing is changed in meta_aggr */ - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if (new_ma_addr != ma_addr || new_ma_size != ma_size) TEST_ERROR /* nothing is changed in sdata_aggr */ - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &new_sdata_addr, &new_sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &new_sdata_addr, &new_sdata_size); if (new_sdata_addr != sdata_addr || new_sdata_size != sdata_size) TEST_ERROR @@ -5804,7 +5804,7 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[type].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); if ((addr1+TBLOCK_SIZE30) != ma_addr) TEST_ERROR @@ -5827,7 +5827,7 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[stype].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if (sdata_addr != (saddr1+TBLOCK_SIZE30)) TEST_ERROR /* calculate fragment for alignment of block 50 in sdata_aggr */ @@ -5848,7 +5848,7 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[stype].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if (sdata_addr != (saddr2+TBLOCK_SIZE50)) TEST_ERROR /* calculate fragment for alignment of block 80 in sdata_aggr */ @@ -5869,7 +5869,7 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[stype].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if (sdata_addr != (saddr3+TBLOCK_SIZE80)) TEST_ERROR /* calculate fragment for alignment of block 2058 */ @@ -5891,8 +5891,8 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) state[type].serial_sect_count += 1; } - H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF__aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); + H5MF__aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); if (new_ma_addr != ma_addr && new_ma_size != ma_size) TEST_ERROR @@ -6815,7 +6815,7 @@ test_mf_fs_persist(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_alloc_to_fs_type(f, type, TBLOCK_SIZE6, (H5F_mem_page_t *)&tt); + H5MF__alloc_to_fs_type(f, type, TBLOCK_SIZE6, (H5F_mem_page_t *)&tt); /* Verify that H5FD_MEM_SUPER free-space manager is there */ if(!H5F_addr_defined(f->shared->fs_addr[tt])) @@ -6996,7 +6996,7 @@ test_mf_fs_gone(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_alloc_to_fs_type(f, type, TBLOCK_SIZE4, (H5F_mem_page_t *)&fs_type); + H5MF__alloc_to_fs_type(f, type, TBLOCK_SIZE4, (H5F_mem_page_t *)&fs_type); /* Verify that the H5FD_MEM_SUPER free-space manager is not there */ if(H5F_addr_defined(f->shared->fs_addr[fs_type])) @@ -7208,7 +7208,7 @@ test_mf_strat_thres_persist(const char *env_h5_drvr, hid_t fapl, hbool_t new_for if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - H5MF_alloc_to_fs_type(f, type, TBLOCK_SIZE6, (H5F_mem_page_t *)&tt); + H5MF__alloc_to_fs_type(f, type, TBLOCK_SIZE6, (H5F_mem_page_t *)&tt); /* Get a pointer to the internal file object */ if(NULL == (f = (H5F_t *)H5I_object(file))) @@ -7359,7 +7359,7 @@ test_mf_strat_thres_gone(const char *env_h5_drvr, hid_t fapl, hbool_t new_format if(HADDR_UNDEF == (addr6 = H5MF_alloc(f, type, (hsize_t)TBLOCK_SIZE6))) FAIL_STACK_ERROR - H5MF_alloc_to_fs_type(f, type, TBLOCK_SIZE6, (H5F_mem_page_t *)&tt); + H5MF__alloc_to_fs_type(f, type, TBLOCK_SIZE6, (H5F_mem_page_t *)&tt); /* For paged aggregation, the section in the page at EOF for small meta fs is not shrunk away */ if(fs_type == H5F_FSPACE_STRATEGY_PAGE) { @@ -7671,7 +7671,7 @@ test_page_alloc_xfree(const char *env_h5_drvr, hid_t fapl) if(!fs_persist) { - H5MF_alloc_to_fs_type(f, H5FD_MEM_OHDR, TBLOCK_SIZE1034, (H5F_mem_page_t *)&fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_OHDR, TBLOCK_SIZE1034, (H5F_mem_page_t *)&fs_type); /* Verify that the freed block with addr2 is found from the small meta data manager */ if(H5MF__find_sect(f, H5FD_MEM_OHDR, (hsize_t)TBLOCK_SIZE1034, f->shared->fs_man[fs_type], &found_addr) < 0) @@ -7704,7 +7704,7 @@ test_page_alloc_xfree(const char *env_h5_drvr, hid_t fapl) if(!fs_persist) { - H5MF_alloc_to_fs_type(f, H5FD_MEM_DRAW, TBLOCK_SIZE5000, (H5F_mem_page_t *)&fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_DRAW, TBLOCK_SIZE5000, (H5F_mem_page_t *)&fs_type); /* Verify that the freed block with gaddr1 is found from the large data manager */ if(H5MF__find_sect(f, H5FD_MEM_DRAW, (hsize_t)TBLOCK_SIZE8192, f->shared->fs_man[fs_type], &found_addr) < 0) @@ -7731,12 +7731,12 @@ test_page_alloc_xfree(const char *env_h5_drvr, hid_t fapl) TEST_ERROR /* Verify that the large generic manager is there */ - H5MF_alloc_to_fs_type(f, H5FD_MEM_DRAW, TBLOCK_SIZE5000, (H5F_mem_page_t *)&fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_DRAW, TBLOCK_SIZE5000, (H5F_mem_page_t *)&fs_type); if(!H5F_addr_defined(f->shared->fs_addr[fs_type])) TEST_ERROR /* Verify that the small meta data manager is there */ - H5MF_alloc_to_fs_type(f, H5FD_MEM_OHDR, f->shared->fs_page_size - 1, (H5F_mem_page_t *)&fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_OHDR, f->shared->fs_page_size - 1, (H5F_mem_page_t *)&fs_type); if(!H5F_addr_defined(f->shared->fs_addr[fs_type])) TEST_ERROR @@ -7777,7 +7777,7 @@ test_page_alloc_xfree(const char *env_h5_drvr, hid_t fapl) if(found_addr != saddr1) TEST_ERROR - H5MF_alloc_to_fs_type(f, H5FD_MEM_DRAW, TBLOCK_SIZE5000, (H5F_mem_page_t *)&fs_type); + H5MF__alloc_to_fs_type(f, H5FD_MEM_DRAW, TBLOCK_SIZE5000, (H5F_mem_page_t *)&fs_type); if(!(f->shared->fs_man[fs_type])) /* Set up to use the large data manager */ diff --git a/test/mount.c b/test/mount.c index d2c0d21..c6230ee 100644 --- a/test/mount.c +++ b/test/mount.c @@ -412,7 +412,7 @@ test_hide(hid_t fapl) FAIL_STACK_ERROR /* Get information about file1:/mnt1/file1 for later */ - if(H5Oget_info_by_name(file1, "/mnt1/file1", &oi1, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "/mnt1/file1", &oi1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Build the virtual file */ if(H5Fmount(file1, "/mnt1", file2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR @@ -431,7 +431,7 @@ test_hide(hid_t fapl) * The original objects under file1:/mnt1 are still accessible by their * other names. This is a rather stupid test but demonstrates a point. */ - if(H5Oget_info_by_name(file1, "/file1", &oi2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "/file1", &oi2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(oi1.fileno != oi2.fileno || H5F_addr_ne(oi1.addr, oi2.addr)) { H5_FAILED(); puts(" Hard link failed for hidden object."); @@ -490,7 +490,7 @@ test_assoc(hid_t fapl) FAIL_STACK_ERROR /* Get information about the root of file2 */ - if(H5Oget_info(file2, &oi1) < 0) FAIL_STACK_ERROR + if(H5Oget_info2(file2, &oi1, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR /* Create the virtual file */ if(H5Fmount(file1, "/mnt1", file2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR @@ -499,7 +499,7 @@ test_assoc(hid_t fapl) * Get info about the mount point -- should be the same as the root group * of file2. */ - if(H5Oget_info_by_name(file1, "/mnt1", &oi2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "/mnt1", &oi2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(oi1.fileno != oi2.fileno || H5F_addr_ne(oi1.addr, oi2.addr)) { H5_FAILED(); @@ -688,7 +688,7 @@ test_preopen(hid_t fapl) if(H5Fmount(file1, "/mnt1", file2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Now access the thing we previously opened */ - if(H5Oget_info(grp, &oinfo) < 0) FAIL_STACK_ERROR + if(H5Oget_info2(grp, &oinfo, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR /* Shut down */ if(H5Funmount(file1, "/mnt1") < 0) FAIL_STACK_ERROR @@ -752,10 +752,10 @@ test_postopen(hid_t fapl) if(H5Funmount(file1, "/mnt1") < 0) FAIL_STACK_ERROR /* Now access the thing we previously opened */ - if(H5Oget_info(grp, &oinfo) < 0) FAIL_STACK_ERROR + if(H5Oget_info2(grp, &oinfo, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR /* Try accessing it from the file */ - if(H5Oget_info_by_name(file2, "/file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file2, "/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Shut down */ if(H5Gclose(grp) < 0) FAIL_STACK_ERROR @@ -825,12 +825,12 @@ test_unlink(hid_t fapl) * before the H5Fmount() and thus refers to the mount point itself rather * than the group mounted there. */ - if(H5Oget_info_by_name(file1, "/mnt_unlink/file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(mnt, "/mnt_unlink/file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(root, "/mnt_unlink/file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(root, "file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(mnt, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(root, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(root, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR H5E_BEGIN_TRY { - status = H5Oget_info_by_name(mnt, "file2", &oinfo, H5P_DEFAULT); + status = H5Oget_info_by_name2(mnt, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(status >= 0) { H5_FAILED(); @@ -845,9 +845,9 @@ test_unlink(hid_t fapl) * We should still be able to get to "/file2" of file2 by starting at * `root' which is still open, but not by name. */ - if(H5Oget_info_by_name(root, "file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(root, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR H5E_BEGIN_TRY { - status = H5Oget_info_by_name(mnt, "file2", &oinfo, H5P_DEFAULT); + status = H5Oget_info_by_name2(mnt, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(status >= 0) { H5_FAILED(); @@ -855,7 +855,7 @@ test_unlink(hid_t fapl) TEST_ERROR } /* end if */ H5E_BEGIN_TRY { - status = H5Oget_info_by_name(file2, "/mnt_unlink/file2", &oinfo, H5P_DEFAULT); + status = H5Oget_info_by_name2(file2, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(status >= 0) { H5_FAILED(); @@ -943,7 +943,7 @@ test_mvmpt(hid_t fapl) if(H5Lmove(file1, "/mnt_move_a", H5L_SAME_LOC, "/mnt_move_b", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Access something under the new name */ - if(H5Oget_info_by_name(file1, "/mnt_move_b/file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "/mnt_move_b/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Shut down */ if(H5Funmount(file1, "/mnt_move_b") < 0) FAIL_STACK_ERROR @@ -1102,18 +1102,18 @@ test_uniformity(hid_t fapl) if(H5Fmount(file1, "/mnt1", file2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Access some things from the file1 handle */ - if(H5Oget_info_by_name(file1, "/", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file1, "/mnt1", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file1, "mnt1", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file1, "/mnt1/file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file1, "mnt1/file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "/", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "/mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "/mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Access the same things from the file2 handle */ - if(H5Oget_info_by_name(file2, "/", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file2, "/mnt1", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file2, "mnt1", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file2, "/mnt1/file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file2, "mnt1/file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file2, "/", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file2, "/mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file2, "mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file2, "/mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file2, "mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Shut down */ if(H5Funmount(file1, "/mnt1") < 0) FAIL_STACK_ERROR @@ -1170,7 +1170,7 @@ test_close(hid_t fapl) * still accessible through the file2 handle. */ if(H5Fclose(file1) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file2, "/mnt1", &oinfo, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name2(file2, "/mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { H5_FAILED(); puts(" File1 contents are not accessible!"); TEST_ERROR @@ -1191,7 +1191,7 @@ test_close(hid_t fapl) * Close file2. It is not actually closed because it's a child of file1. */ if(H5Fclose(file2) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file1, "/mnt1/file2", &oinfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file1, "/mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Fclose(file1) < 0) FAIL_STACK_ERROR /* Check that all file IDs have been closed */ @@ -2495,9 +2495,9 @@ test_fcdegree_strong(hid_t fapl) TEST_ERROR /* Check that objects are still open */ - if(H5Oget_info(gidA, &oinfo) < 0) + if(H5Oget_info2(gidA, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info(gidAM, &oinfo) < 0) + if(H5Oget_info2(gidAM, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR /* Close file #2 (should close open objects also) */ @@ -2506,12 +2506,12 @@ test_fcdegree_strong(hid_t fapl) /* Check that objects are closed */ H5E_BEGIN_TRY { - ret = H5Oget_info(gidA, &oinfo); + ret = H5Oget_info2(gidA, &oinfo, H5O_INFO_BASIC); } H5E_END_TRY; if(ret >= 0) TEST_ERROR H5E_BEGIN_TRY { - ret = H5Oget_info(gidAM, &oinfo); + ret = H5Oget_info2(gidAM, &oinfo, H5O_INFO_BASIC); } H5E_END_TRY; if(ret >= 0) TEST_ERROR diff --git a/test/mtime.c b/test/mtime.c index 38e3960..2cd2d31 100644 --- a/test/mtime.c +++ b/test/mtime.c @@ -90,9 +90,9 @@ main(void) */ h5_fixname(FILENAME[0], fapl, filename, sizeof filename); if((file = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR; - if(H5Oget_info_by_name(file, "dset", &oi1, H5P_DEFAULT) < 0) TEST_ERROR; + if(H5Oget_info_by_name2(file, "dset", &oi1, H5O_INFO_BASIC|H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR; if((dset = H5Dopen2(file, "dset", H5P_DEFAULT)) < 0) TEST_ERROR; - if(H5Oget_info(dset, &oi2) < 0) TEST_ERROR; + if(H5Oget_info2(dset, &oi2, H5O_INFO_BASIC|H5O_INFO_TIME) < 0) TEST_ERROR; if(H5Dclose(dset) < 0) TEST_ERROR; if(H5Fclose(file) < 0) TEST_ERROR; @@ -134,7 +134,7 @@ main(void) file = H5Fopen(testfile, H5F_ACC_RDONLY, H5P_DEFAULT); if(file >= 0){ - if(H5Oget_info_by_name(file, "/Dataset1", &oi1, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, "/Dataset1", &oi1, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR; if(oi1.ctime != MTIME1) { H5_FAILED(); @@ -164,7 +164,7 @@ main(void) file = H5Fopen(testfile, H5F_ACC_RDONLY, H5P_DEFAULT); if(file >= 0){ - if(H5Oget_info_by_name(file, "/Dataset1", &oi2, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, "/Dataset1", &oi2, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR; if(oi2.ctime != MTIME2) { H5_FAILED(); diff --git a/test/objcopy.c b/test/objcopy.c index 3fbb7b8..18de027 100644 --- a/test/objcopy.c +++ b/test/objcopy.c @@ -877,10 +877,10 @@ compare_std_attributes(hid_t oid, hid_t oid2, hid_t pid) cpy_flags = 0; /* Check the number of attributes on source dataset */ - if(H5Oget_info(oid, &oinfo1) < 0) TEST_ERROR + if(H5Oget_info2(oid, &oinfo1, H5O_INFO_NUM_ATTRS) < 0) TEST_ERROR /* Check the number of attributes on destination dataset */ - if(H5Oget_info(oid2, &oinfo2) < 0) TEST_ERROR + if(H5Oget_info2(oid2, &oinfo2, H5O_INFO_NUM_ATTRS) < 0) TEST_ERROR if(cpy_flags & H5O_COPY_WITHOUT_ATTR_FLAG) { /* Check that the destination has no attributes */ @@ -1071,8 +1071,8 @@ compare_data(hid_t parent1, hid_t parent2, hid_t pid, hid_t tid, size_t nelmts, if(obj_owner > 0) { H5O_info_t oinfo1, oinfo2; - if(H5Oget_info(obj_owner, &oinfo1) < 0) TEST_ERROR - if(H5Oget_info(obj1_id, &oinfo2) < 0) TEST_ERROR + if(H5Oget_info2(obj_owner, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Oget_info2(obj1_id, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR if(H5F_addr_eq(oinfo1.addr, oinfo2.addr)) { if(H5Oclose(obj1_id) < 0) TEST_ERROR if(H5Oclose(obj2_id) < 0) TEST_ERROR @@ -1129,8 +1129,8 @@ compare_data(hid_t parent1, hid_t parent2, hid_t pid, hid_t tid, size_t nelmts, if(obj_owner > 0) { H5O_info_t oinfo1, oinfo2; - if(H5Oget_info(obj_owner, &oinfo1) < 0) TEST_ERROR - if(H5Oget_info(obj1_id, &oinfo2) < 0) TEST_ERROR + if(H5Oget_info2(obj_owner, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Oget_info2(obj1_id, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR if(H5F_addr_eq(oinfo1.addr, oinfo2.addr)) { if(H5Oclose(obj1_id) < 0) TEST_ERROR if(H5Oclose(obj2_id) < 0) TEST_ERROR @@ -1423,8 +1423,8 @@ compare_groups(hid_t gid, hid_t gid2, hid_t pid, int depth, unsigned copy_flags) H5O_info_t oinfo, oinfo2; /* Object info */ /* Compare some pieces of the object info */ - if(H5Oget_info_by_name(gid, objname, &oinfo, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name(gid2, objname2, &oinfo2, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(gid, objname, &oinfo, H5O_INFO_BASIC|H5O_INFO_HDR, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(gid2, objname2, &oinfo2, H5O_INFO_BASIC|H5O_INFO_HDR, H5P_DEFAULT) < 0) TEST_ERROR if(oinfo.type != oinfo2.type) TEST_ERROR if(oinfo.rc != oinfo2.rc) TEST_ERROR @@ -1949,8 +1949,8 @@ test_copy_named_datatype_attr_self(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap if(H5Tcommitted(tid) != TRUE) TEST_ERROR /* verify that the addresses of the datatypes are the same */ - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR - if(H5Oget_info(tid2, &oinfo2) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Oget_info2(tid2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.fileno != oinfo2.fileno || oinfo.addr != oinfo2.addr) FAIL_PUTS_ERROR("destination attribute does not use the same committed datatype") @@ -10331,28 +10331,28 @@ test_copy_committed_datatype_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* Open SRC1 committed dtype, get address */ if((tid = H5Topen2(fid_dst, NAME_GROUP_TOP "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open SRC1 dset dtype, check address */ if((did = H5Dopen2(fid_dst, NAME_GROUP_TOP "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR /* Open SRC2 committed dtype, check address */ if((tid = H5Topen2(fid_dst, NAME_GROUP_TOP2 "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* Open SRC2 dset dtype, check address */ if((did = H5Dopen2(fid_dst, NAME_GROUP_TOP2 "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10385,7 +10385,7 @@ test_copy_committed_datatype_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* Open SRC1 dset dtype, get address */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10393,7 +10393,7 @@ test_copy_committed_datatype_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* Open SRC2 dset dtype, check address */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10565,28 +10565,28 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo /* Open group 1 source committed dtype, get address */ if((tid = H5Topen2(fid, NAME_GROUP_TOP "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open group 1 source dset dtype, check address */ if((did = H5Dopen2(fid, NAME_GROUP_TOP "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR /* Open group 1 committed dtype, check address */ if((tid = H5Topen2(fid, NAME_GROUP_TOP3 "/" NAME_GROUP_TOP "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* Open group 1 dset dtype, check address */ if((did = H5Dopen2(fid, NAME_GROUP_TOP3 "/" NAME_GROUP_TOP "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10594,7 +10594,7 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo /* Open group 2 source committed dtype, get address and make sure it is * different from group 1 source committed dtype */ if((tid = H5Topen2(fid, NAME_GROUP_TOP2 "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr == exp_addr) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR @@ -10602,21 +10602,21 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo /* Open group 2 source dset dtype, check address */ if((did = H5Dopen2(fid, NAME_GROUP_TOP2 "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR /* Open group 2 committed dtype, check address */ if((tid = H5Topen2(fid, NAME_GROUP_TOP3 "/" NAME_GROUP_TOP2 "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* Open group 2 dset dtype, check address */ if((did = H5Dopen2(fid, NAME_GROUP_TOP3 "/" NAME_GROUP_TOP2 "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10644,7 +10644,7 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo /* Open group 1 source dset dtype, get address */ if((did = H5Dopen2(fid, NAME_GROUP_TOP "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10652,7 +10652,7 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo /* Open group 1 dset dtype, check address */ if((did = H5Dopen2(fid, NAME_GROUP_TOP4 "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10661,7 +10661,7 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo * different from group 1 source dset dtype */ if((did = H5Dopen2(fid, NAME_GROUP_TOP2 "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr == exp_addr) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR @@ -10670,7 +10670,7 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo /* Open group 2 dset dtype, check address */ if((did = H5Dopen2(fid, NAME_GROUP_TOP4 "/" NAME_DATASET_SIMPLE2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10837,14 +10837,14 @@ test_copy_committed_dt_merge_sugg(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl /* Open committed dtype "b", get address */ if((tid = H5Topen2(fid_dst, "/b", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open dset dtype, check address */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10875,28 +10875,28 @@ test_copy_committed_dt_merge_sugg(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl /* Open committed dtype "a", get address */ if((tid = H5Topen2(fid_dst, "/a", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open dset 2 dtype, check address */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR /* Open committed dtype "b", get address */ if((tid = H5Topen2(fid_dst, "/b", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open dset dtype, check address */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11072,7 +11072,7 @@ test_copy_committed_dt_merge_attr(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl /* Open attribute dtype, get address */ if((aid = H5Aopen_by_name(fid_dst, NAME_GROUP_TOP, "attr", H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Aget_type(aid)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR if(H5Aclose(aid) < 0) TEST_ERROR @@ -11080,7 +11080,7 @@ test_copy_committed_dt_merge_attr(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl /* Open dset dtype, check address */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11331,13 +11331,13 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* get address of committed datatype at root group */ if((tid = H5Topen2(fid_dst, SRC_ROOT_GROUP "/" ROOT_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr_int = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* get address of committed datatype at /g0 */ if((tid = H5Topen2(fid_dst, SRC_ROOT_GROUP NAME_GROUP_TOP "/" GROUP_NDT_SHORT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr_short = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR @@ -11351,7 +11351,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* check address of datatype for second dataset */ if((did = H5Dopen2(fid_dst, SRC_ROOT_GROUP NAME_GROUP_TOP "/" SRC_NDT_DSET2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr_short) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11359,7 +11359,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* check address of datatype for third dataset */ if((did = H5Dopen2(fid_dst, SRC_ROOT_GROUP NAME_GROUP_TOP "/" SRC_NDT_DSET3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr_int) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11371,7 +11371,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* get address of committed datatype at /g0 */ if((tid = H5Topen2(fid_dst, NAME_GROUP_TOP "/" GROUP_NDT_SHORT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr_short) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR @@ -11385,7 +11385,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* check address of datatype for second dataset */ if((did = H5Dopen2(fid_dst, NAME_GROUP_TOP "/" SRC_NDT_DSET2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr_short) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11393,7 +11393,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* check address of datatype for third dataset */ if((did = H5Dopen2(fid_dst, NAME_GROUP_TOP "/" SRC_NDT_DSET3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr_int) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11408,7 +11408,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* Open attribute with anon ndt (short), get address */ if((aid = H5Aopen_by_name(fid_dst, NAME_GROUP_UNCOPIED, DST_ATTR_ANON_SHORT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Aget_type(aid)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr_short) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Aclose(aid) < 0) TEST_ERROR @@ -11416,7 +11416,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* Open attribute with anon ndt (int), get address */ if((aid = H5Aopen_by_name(fid_dst, NAME_GROUP_UNCOPIED, DST_ATTR_ANON_INT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Aget_type(aid)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr_int) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Aclose(aid) < 0) TEST_ERROR @@ -11431,7 +11431,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* check address of datatype for second dataset */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr_short) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11439,7 +11439,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* check address of datatype for third dataset */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr_int) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11642,50 +11642,50 @@ test_copy_cdt_merge_cdt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t ds */ /* get address of committed datatype: /src_root/src_ndt_double */ if((tid = H5Topen2(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_DOUBLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* get address of committed datatype: /dst_ndt_double */ if((tid = H5Topen2(fid_dst, "/" DST_NDT_DOUBLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* get address of committed datatype: /src_root/src_ndt_float */ if((tid = H5Topen2(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_FLOAT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* get address of committed datatype: /dst_ndt_float */ if((tid = H5Topen2(fid_dst, "/" DST_NDT_FLOAT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* get address of committed datatype: /src_root/src_ndt_int */ if((tid = H5Topen2(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* get address of committed datatype: /dst_ndt_int */ if((tid = H5Topen2(fid_dst, "/" DST_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* get address of committed datatype: /src_root/src_ndt_short */ if((tid = H5Topen2(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_SHORT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* open attribute; get its dtype; get dtype's address: /src_root/src_ndt_double/dst_attr */ if((aid = H5Aopen_by_name(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_DOUBLE, DST_ATTR, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Aget_type(aid)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Aclose(aid) < 0) TEST_ERROR @@ -11816,13 +11816,13 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* open committed dtype "/dst_ndt_int", get its address */ if((tid = H5Topen2(fid_dst, DST_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* check address of "/uncopied/src_ndt_int" */ if((tid = H5Topen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR @@ -11849,13 +11849,13 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* open committed dtype "/uncopied/src_ndt_int", get its address */ if((tid = H5Topen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* check address of "/src_ndt_int" */ if((tid = H5Topen2(fid_dst, SRC_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR @@ -11887,13 +11887,13 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Open committed dtype "/uncopied/src_ndt_int", get its address */ if((tid = H5Topen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* check address of "/src_ndt_int2" */ if((tid = H5Topen2(fid_dst, SRC_NDT_INT2, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR @@ -11921,13 +11921,13 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Open committed dtype "/dst_dt_int", get its address */ if((tid = H5Topen2(fid_dst, DST_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* check address of "/uncopied/src_ndt_int2" */ if((tid = H5Topen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_INT2, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR @@ -12077,14 +12077,14 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Open committed dtype "/dst_ndt_int", get its address */ if((tid = H5Topen2(fid_dst, DST_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* check address of datatype for the copied dataset: "/uncopied/src_ndt_dset" */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12113,7 +12113,7 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Open committed dtype dataset "/uncopied/src_ndt_dset", get its datatype address */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12121,7 +12121,7 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* check address of datatype for the copied dataset: "/src_ndt_dset" */ if((did = H5Dopen2(fid_dst, SRC_NDT_DSET, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12155,7 +12155,7 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* open the copied dataset: /uncopied/src_ndt_dset", get its address */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12163,7 +12163,7 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* check address of datatype for the copied dataset: "/src_ndt_dset2" */ if((did = H5Dopen2(fid_dst, SRC_NDT_DSET2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12193,7 +12193,7 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* open the copied dataset: "/src_ndt_dset", get its datatype address */ if((did = H5Dopen2(fid_dst, SRC_NDT_DSET, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12201,7 +12201,7 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* check address of datatype for the copied dataset: /uncopied/src_ndt_dset2 */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12861,14 +12861,14 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Open committed dtype "b", get address */ if((tid = H5Topen2(fid_dst, "/b", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open dset dtype, check address */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12909,14 +12909,14 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Open committed dtype "a", get address */ if((tid = H5Topen2(fid_dst, "/a", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open copied dataset and its dtype, check address */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr != exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12948,28 +12948,28 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Open committed dtype "a", get address */ if((tid = H5Topen2(fid_dst, "/a", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open the copied dataset and get its dtype, addresses should not be equal */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr == exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR /* Open committed dtype "b", get address */ if((tid = H5Topen2(fid_dst, "/b", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open the copied dataset and get its dtype, addresses should not be equal */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr == exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -13008,28 +13008,28 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Open committed dtype "a", get address */ if((tid = H5Topen2(fid_dst, "/a", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open the copied dataset and get its dtype, addresses should not be equal */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr == exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR /* Open committed dtype "b", get address */ if((tid = H5Topen2(fid_dst, "/b", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR exp_addr = oinfo.addr; if(H5Tclose(tid) < 0) TEST_ERROR /* Open the copied dataset and get its dtype, addresses should not be equal */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info(tid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR if(oinfo.addr == exp_addr) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR diff --git a/test/ohdr.c b/test/ohdr.c index e91c6a8..146245f 100644 --- a/test/ohdr.c +++ b/test/ohdr.c @@ -383,7 +383,7 @@ test_ohdr_swmr(hbool_t new_format) FAIL_STACK_ERROR /* Get the object information */ - if(H5Oget_info(did, &obj_info) < 0) + if(H5Oget_info2(did, &obj_info, H5O_INFO_HDR) < 0) FAIL_STACK_ERROR if(new_format) diff --git a/test/stab.c b/test/stab.c index 331c68d..37097b7 100644 --- a/test/stab.c +++ b/test/stab.c @@ -419,7 +419,7 @@ lifecycle(hid_t fcpl, hid_t fapl2) if(H5G__is_new_dense_test(gid) != FALSE) TEST_ERROR /* Check that the object header is only one chunk and the space has been allocated correctly */ - if(H5Oget_info(gid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(gid, &oinfo, H5O_INFO_HDR) < 0) TEST_ERROR if(oinfo.hdr.space.total != 151) TEST_ERROR if(oinfo.hdr.space.free != 0) TEST_ERROR if(oinfo.hdr.nmesgs != 6) TEST_ERROR @@ -441,7 +441,7 @@ lifecycle(hid_t fcpl, hid_t fapl2) if(H5G__is_new_dense_test(gid) != TRUE) TEST_ERROR /* Check that the object header is still one chunk and the space has been allocated correctly */ - if(H5Oget_info(gid, &oinfo) < 0) TEST_ERROR + if(H5Oget_info2(gid, &oinfo, H5O_INFO_HDR) < 0) TEST_ERROR if(oinfo.hdr.space.total != 151) TEST_ERROR if(oinfo.hdr.space.free != 92) TEST_ERROR if(oinfo.hdr.nmesgs != 3) TEST_ERROR diff --git a/test/tattr.c b/test/tattr.c index b5495de..bf9ce96 100644 --- a/test/tattr.c +++ b/test/tattr.c @@ -422,7 +422,7 @@ test_attr_basic_read(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 2, "H5Oget_info"); @@ -451,7 +451,7 @@ test_attr_basic_read(hid_t fapl) CHECK(group, FAIL, "H5Gopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info(group, &oinfo); + ret = H5Oget_info2(group, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 1, "H5Oget_info"); @@ -793,7 +793,7 @@ test_attr_compound_read(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 1, "H5Oget_info"); @@ -997,7 +997,7 @@ test_attr_scalar_read(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 1, "H5Oget_info"); @@ -1200,7 +1200,7 @@ test_attr_mult_read(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 3, "H5Oget_info"); @@ -1457,7 +1457,7 @@ test_attr_iterate(hid_t fapl) CHECK(ret, FAIL, "H5Sclose"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 0, "H5Oget_info"); @@ -1475,7 +1475,7 @@ test_attr_iterate(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 3, "H5Oget_info"); @@ -1522,7 +1522,7 @@ test_attr_delete(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 3, "H5Oget_info"); @@ -1531,7 +1531,7 @@ test_attr_delete(hid_t fapl) VERIFY(ret, FAIL, "H5Adelete"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 3, "H5Oget_info"); @@ -1540,7 +1540,7 @@ test_attr_delete(hid_t fapl) CHECK(ret, FAIL, "H5Adelete"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 2, "H5Oget_info"); @@ -1577,7 +1577,7 @@ test_attr_delete(hid_t fapl) CHECK(ret, FAIL, "H5Adelete"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 1, "H5Oget_info"); @@ -1600,7 +1600,7 @@ test_attr_delete(hid_t fapl) CHECK(ret, FAIL, "H5Adelete"); /* Verify the correct number of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, 0, "H5Oget_info"); @@ -1665,7 +1665,7 @@ test_attr_dtype_shared(hid_t fapl) CHECK(ret, FAIL, "H5Tcommit2"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name(file_id, TYPE1_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "H5Oget_info_by_name"); @@ -1678,7 +1678,7 @@ test_attr_dtype_shared(hid_t fapl) CHECK(dset_id, FAIL, "H5Dcreate2"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name(file_id, TYPE1_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 2, "H5Oget_info_by_name"); @@ -1687,7 +1687,7 @@ test_attr_dtype_shared(hid_t fapl) CHECK(attr_id, FAIL, "H5Acreate2"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name(file_id, TYPE1_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 3, "H5Oget_info_by_name"); @@ -1700,7 +1700,7 @@ test_attr_dtype_shared(hid_t fapl) CHECK(ret, FAIL, "H5Adelete"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name(file_id, TYPE1_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 2, "H5Oget_info_by_name"); @@ -1709,7 +1709,7 @@ test_attr_dtype_shared(hid_t fapl) CHECK(attr_id, FAIL, "H5Acreate2"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name(file_id, TYPE1_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 3, "H5Oget_info_by_name"); @@ -1764,7 +1764,7 @@ test_attr_dtype_shared(hid_t fapl) CHECK(ret, FAIL, "H5Dclose"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name(file_id, TYPE1_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 3, "H5Oget_info_by_name"); @@ -1773,7 +1773,7 @@ test_attr_dtype_shared(hid_t fapl) CHECK(ret, FAIL, "H5Ldelete"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name(file_id, TYPE1_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "H5Oget_info_by_name"); @@ -2464,7 +2464,7 @@ test_attr_dense_delete(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Aclose"); /* Check # of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, (u + 1), "H5Oget_info"); } /* end for */ @@ -2646,7 +2646,7 @@ test_attr_dense_rename(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Arename_by_name"); /* Check # of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, (u + 1), "H5Oget_info"); } /* end for */ @@ -2798,7 +2798,7 @@ test_attr_dense_unlink(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Aclose"); /* Check # of attributes */ - ret = H5Oget_info(dataset, &oinfo); + ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.num_attrs, (u + 1), "H5Oget_info"); } /* end for */ @@ -10484,7 +10484,7 @@ test_attr_bug8(hid_t fcpl, hid_t fapl) CHECK(gid, FAIL, "H5Gcreate2"); /* Get root group address */ - ret = H5Oget_info(fid, &oinfo); + ret = H5Oget_info2(fid, &oinfo, H5O_INFO_BASIC); CHECK(ret, FAIL, "H5Oget_info"); root_addr = oinfo.addr; @@ -10509,7 +10509,7 @@ test_attr_bug8(hid_t fcpl, hid_t fapl) CHECK(gid, FAIL, "H5Gopen2"); oid = H5Oopen(gid, LINK1_NAME, H5P_DEFAULT); CHECK(oid, FAIL, "H5Oopen"); - ret = H5Oget_info(oid, &oinfo); + ret = H5Oget_info2(oid, &oinfo, H5O_INFO_BASIC); CHECK(ret, FAIL, "H5Oget_info"); if(oinfo.addr != root_addr) TestErrPrintf("incorrect link target address: addr: %llu, expected: %llu\n", (long long unsigned)oinfo.addr, (long long unsigned)root_addr); @@ -10554,7 +10554,7 @@ test_attr_bug8(hid_t fcpl, hid_t fapl) CHECK(gid, FAIL, "H5Gopen2"); oid = H5Oopen(gid, LINK1_NAME, H5P_DEFAULT); CHECK(oid, FAIL, "H5Oopen"); - ret = H5Oget_info(oid, &oinfo); + ret = H5Oget_info2(oid, &oinfo, H5O_INFO_BASIC); CHECK(ret, FAIL, "H5Oget_info"); if(oinfo.addr != root_addr) TestErrPrintf("incorrect link target address: addr: %llu, expected: %llu\n", (long long unsigned)oinfo.addr, (long long unsigned)root_addr); diff --git a/test/testfiles/err_compat_1 b/test/testfiles/err_compat_1 index d471e13..8190665 100644 --- a/test/testfiles/err_compat_1 +++ b/test/testfiles/err_compat_1 @@ -54,6 +54,6 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #001: (file name) line (number) in test_error2(): H5Dwrite shouldn't succeed major: Error API minor: Write failed - #002: (file name) line (number) in H5Dwrite(): not a dataset + #002: (file name) line (number) in H5Dwrite(): dset_id is not a dataset ID major: Invalid arguments to routine minor: Inappropriate type diff --git a/test/testfiles/error_test_1 b/test/testfiles/error_test_1 index b0b5085..02cfed8 100644 --- a/test/testfiles/error_test_1 +++ b/test/testfiles/error_test_1 @@ -21,7 +21,7 @@ Error Test-DIAG: Error detected in Error Program (1.0) thread (IDs): Testing error API based on data I/O HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Dwrite(): not a dataset + #000: (file name) line (number) in H5Dwrite(): dset_id is not a dataset ID major: Invalid arguments to routine minor: Inappropriate type Error Test-DIAG: Error detected in Error Program (1.0) thread (IDs): @@ -32,7 +32,7 @@ Error Test-DIAG: Error detected in Error Program (1.0) thread (IDs): major: Error in IO minor: Error in H5Dwrite HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #002: (file name) line (number) in H5Dwrite(): not a dataset + #002: (file name) line (number) in H5Dwrite(): dset_id is not a dataset ID major: Invalid arguments to routine minor: Inappropriate type diff --git a/test/tfile.c b/test/tfile.c index 677fd06..d3134f8 100644 --- a/test/tfile.c +++ b/test/tfile.c @@ -4891,7 +4891,7 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, /* * Make sure the root group has the correct object header version */ - ret = H5Oget_info_by_name(file, "/", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file, "/", &oinfo, H5O_INFO_HDR, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.version, oh_vers_create, "H5Oget_info_by_name"); @@ -4907,7 +4907,7 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, file = H5Fopen("tfile5.h5", H5F_ACC_RDWR, fapl); CHECK(file, FAIL, "H5Fopen"); - ret = H5Oget_info_by_name(file, "/", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file, "/", &oinfo, H5O_INFO_HDR, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.version, oh_vers_create, "H5Oget_info_by_name"); @@ -4918,7 +4918,7 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, group = H5Gcreate2(file, "/G1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); CHECK(group, FAIL, "H5Gcreate"); - ret = H5Oget_info(group, &oinfo); + ret = H5Oget_info2(group, &oinfo, H5O_INFO_HDR); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo.hdr.version, oh_vers_mod, "H5Oget_info"); @@ -4932,7 +4932,7 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, group = H5Gcreate2(file, "/G1/G3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); CHECK(group, FAIL, "H5Gcreate"); - ret = H5Oget_info(group, &oinfo); + ret = H5Oget_info2(group, &oinfo, H5O_INFO_HDR); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.version, oh_vers_mod, "H5Oget_info_by_name"); @@ -4942,7 +4942,7 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, /* * Make sure the root group still has the correct object header version */ - ret = H5Oget_info_by_name(file, "/", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file, "/", &oinfo, H5O_INFO_HDR, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.version, oh_vers_create, "H5Oget_info_by_name"); @@ -5640,7 +5640,7 @@ test_libver_bounds_obj(hid_t fapl) CHECK(fid, FAIL, "H5Fcreate"); /* Get root group's object info */ - ret = H5Oget_info_by_name(fid, "/", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "/", &oinfo, H5O_INFO_HDR, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); /* Verify object header version is 2 because shared message is enabled */ @@ -5659,7 +5659,7 @@ test_libver_bounds_obj(hid_t fapl) CHECK(fid, FAIL, "H5Fcreate"); /* Get root group's object info */ - ret = H5Oget_info_by_name(fid, "/", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "/", &oinfo, H5O_INFO_HDR, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); /* Verify object header version is as indicated by low_bound */ @@ -5714,7 +5714,7 @@ test_libver_bounds_obj(hid_t fapl) VERIFY(ginfo.storage_type, H5G_STORAGE_TYPE_SYMBOL_TABLE, "H5Gget_info"); /* Get object header information */ - ret = H5Oget_info_by_name(gid, GRP_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(gid, GRP_NAME, &oinfo, H5O_INFO_HDR, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); /* Verify object header version as indicated by low_bound */ diff --git a/test/th5o.c b/test/th5o.c index 00d706c..63fee5f 100644 --- a/test/th5o.c +++ b/test/th5o.c @@ -410,13 +410,13 @@ test_h5o_refcount(void) CHECK(ret, FAIL, "H5Sclose"); /* Get ref counts for each object. They should all be 1, since each object has a hard link. */ - ret = H5Oget_info_by_name(fid, "group", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid, "datatype", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid, "dataset", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); @@ -429,13 +429,13 @@ test_h5o_refcount(void) CHECK(ret, FAIL, "H5Oincr_refcount"); /* Get ref counts for each object. They should all be 2 now. */ - ret = H5Oget_info_by_name(fid, "group", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid, "datatype", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid, "dataset", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); @@ -447,13 +447,13 @@ test_h5o_refcount(void) ret = H5Odecr_refcount(dset); CHECK(ret, FAIL, "H5Odecr_refcount"); - ret = H5Oget_info_by_name(fid, "group", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid, "datatype", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid, "dataset", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); @@ -485,13 +485,13 @@ test_h5o_refcount(void) dset = H5Dopen2(fid, "dataset", H5P_DEFAULT); CHECK(dset, FAIL, "H5Dopen2"); - ret = H5Oget_info_by_name(fid, "group", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid, "datatype", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid, "dataset", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); @@ -523,13 +523,13 @@ test_h5o_refcount(void) dset = H5Dopen2(fid, "dataset", H5P_DEFAULT); CHECK(dset, FAIL, "H5Dopen2"); - ret = H5Oget_info_by_name(fid, "group", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid, "datatype", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid, "dataset", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); @@ -1272,9 +1272,9 @@ test_h5o_getinfo_same_file(void) HDmemset(&oinfo2, 0, sizeof(oinfo2)); /* Query the object info for each object, through group IDs */ - ret = H5Oget_info(gid1, &oinfo1); + ret = H5Oget_info2(gid1, &oinfo1, H5O_INFO_BASIC); CHECK(ret, FAIL, "H5Oget_info"); - ret = H5Oget_info(gid2, &oinfo2); + ret = H5Oget_info2(gid2, &oinfo2, H5O_INFO_BASIC); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info"); @@ -1284,9 +1284,9 @@ test_h5o_getinfo_same_file(void) HDmemset(&oinfo2, 0, sizeof(oinfo2)); /* Query the object info for each object, by name */ - ret = H5Oget_info_by_name(fid1, "group1", &oinfo1, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid1, "group1", &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid1, "group2", &oinfo2, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid1, "group2", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info"); @@ -1317,9 +1317,9 @@ test_h5o_getinfo_same_file(void) HDmemset(&oinfo2, 0, sizeof(oinfo2)); /* Query the object info for each object, through group IDs */ - ret = H5Oget_info(gid1, &oinfo1); + ret = H5Oget_info2(gid1, &oinfo1, H5O_INFO_BASIC); CHECK(ret, FAIL, "H5Oget_info"); - ret = H5Oget_info(gid2, &oinfo2); + ret = H5Oget_info2(gid2, &oinfo2, H5O_INFO_BASIC); CHECK(ret, FAIL, "H5Oget_info"); VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info"); @@ -1329,9 +1329,9 @@ test_h5o_getinfo_same_file(void) HDmemset(&oinfo2, 0, sizeof(oinfo2)); /* Query the object info for each object, by name */ - ret = H5Oget_info_by_name(fid1, "group1", &oinfo1, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid1, "group1", &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); - ret = H5Oget_info_by_name(fid1, "group2", &oinfo2, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid1, "group2", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info"); @@ -1348,6 +1348,136 @@ test_h5o_getinfo_same_file(void) } /* test_h5o_getinfo_same_file() */ +#ifndef H5_NO_DEPRECATED_SYMBOLS + +/**************************************************************** +** +** visit_obj_cb(): +** This is the callback function invoked by H5Ovisit1() in +** test_h5o_getinfo_visit(): +** --Verify that the object info returned to the callback +** function is the same as H5Oget_info2(). +** +****************************************************************/ +static int +visit_obj_cb(hid_t group_id, const char *name, const H5O_info_t *oinfo1, + void H5_ATTR_UNUSED *_op_data) +{ + H5O_info_t oinfo2; /* Object info structs */ + + /* Verify the object info for "group1", "group2" and the root group */ + if(!(HDstrcmp(name, "group1"))) { + H5Oget_info_by_name2(group_id, name, &oinfo2, H5O_INFO_NUM_ATTRS, H5P_DEFAULT); + VERIFY(oinfo1->num_attrs, oinfo2.num_attrs, "obj info from H5Ovisit1"); + } else if(!(HDstrcmp(name, "group2"))) { + H5Oget_info_by_name2(group_id, name, &oinfo2, H5O_INFO_HDR, H5P_DEFAULT); + VERIFY(oinfo1->hdr.nmesgs, oinfo2.hdr.nmesgs, "obj info from H5Ovisit1/H5Oget_info2"); + VERIFY(oinfo1->hdr.nchunks, oinfo2.hdr.nchunks, "obj info from H5Ovisit1/H5Oget_info2"); + } else if(!(HDstrcmp(name, "."))) { + H5Oget_info_by_name2(group_id, name, &oinfo2, H5O_INFO_META_SIZE, H5P_DEFAULT); + VERIFY(oinfo1->meta_size.obj.index_size, oinfo2.meta_size.obj.index_size, "obj info from H5Ovisit1/H5Oget_info2"); + VERIFY(oinfo1->meta_size.obj.heap_size, oinfo2.meta_size.obj.heap_size, "obj info from H5Ovisit1/H5Oget_info2"); + } + + return(H5_ITER_CONT); +} /* end visit_obj_cb() */ + + +/**************************************************************** +** +** test_h5o_getinfo_visit(): +** Verify that the object info returned via H5Oget_info1() +** and H5Oget_info2() are the same. +** Verify that the object info retrieved via H5Ovisit1() is +** the same as H5Oget_info2(). +** +****************************************************************/ +static void +test_h5o_getinfo_visit(void) +{ + hid_t fid = -1; /* HDF5 File ID */ + hid_t gid1 = -1, gid2 = -1; /* Group IDs */ + hid_t sid = -1; /* Dataspace ID */ + hid_t aid = -1; /* Attribute ID */ + H5O_info_t oinfo1, oinfo2; /* Object info structs */ + char attrname[25]; /* Attribute name */ + int j; /* Local index variable */ + herr_t ret; /* Value returned from API calls */ + + /* Create an HDF5 file */ + fid = H5Fcreate(TEST_FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Create "group1" in the file */ + gid1 = H5Gcreate2(fid, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(gid1, FAIL, "H5Gcreate2"); + + /* Create dataspace */ + sid = H5Screate(H5S_SCALAR); + CHECK(sid, FAIL, "H5Screate"); + + /* Attach 10 attributes to "group1" */ + for(j = 0; j <10; j++) { + /* Create the attribute name */ + sprintf(attrname, "attr%u", j); + /* Create the attribute */ + aid = H5Acreate2(gid1, attrname, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT); + CHECK(aid, FAIL, "H5Acreate2"); + /* Close the attribute */ + ret = H5Aclose(aid); + CHECK(ret, FAIL, "H5Aclose"); + } + + /* Create "group2" in the file */ + gid2 = H5Gcreate2(fid, "group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(gid2, FAIL, "H5Gcreate2"); + + /* Reset object info */ + HDmemset(&oinfo1, 0, sizeof(oinfo1)); + HDmemset(&oinfo2, 0, sizeof(oinfo2)); + + /* Query the object info for "group1" via H5Oget_info1 and H5Oget_info2 */ + ret = H5Oget_info1(gid1, &oinfo1); + CHECK(ret, FAIL, "H5Oget_info"); + ret = H5Oget_info2(gid1, &oinfo2, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info"); + + /* Verify the object info for "group1" is correct */ + VERIFY(oinfo1.fileno, oinfo2.fileno, "obj info from H5Oget_info1/2"); + VERIFY(oinfo1.num_attrs, oinfo2.num_attrs, "obj info from H5Oget_info1/2"); + + /* Reset object info */ + HDmemset(&oinfo1, 0, sizeof(oinfo1)); + HDmemset(&oinfo2, 0, sizeof(oinfo2)); + + /* Query the object info for "group2" via H5Oget_info1 and H5Oget_info2 */ + ret = H5Oget_info_by_name1(fid, "group2", &oinfo1, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name2(fid, "group2", &oinfo2, H5O_INFO_HDR|H5O_INFO_META_SIZE, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name"); + + /* Verify the object info for "group2" is correct */ + VERIFY(oinfo1.hdr.nmesgs, oinfo2.hdr.nmesgs, "obj info from H5Oget_info1/2"); + VERIFY(oinfo1.hdr.nchunks, oinfo2.hdr.nchunks, "obj info from H5Oget_info1/2"); + VERIFY(oinfo1.meta_size.obj.index_size, oinfo2.meta_size.obj.index_size, "obj info from H5Oget_info1/2"); + VERIFY(oinfo1.meta_size.obj.heap_size, oinfo2.meta_size.obj.heap_size, "obj info from H5Oget_info1/2"); + + /* Close everything */ + ret = H5Gclose(gid1); + CHECK(ret, FAIL, "H5Gclose"); + ret = H5Gclose(gid2); + CHECK(ret, FAIL, "H5Gclose"); + + /* Verify the object info returned to the callback function is correct */ + ret = H5Ovisit1(fid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, NULL); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + +} /* test_h5o_getinfo_visit() */ + +#endif /* H5_NO_DEPRECATED_SYMBOLS */ /**************************************************************** @@ -1370,6 +1500,9 @@ test_h5o(void) test_h5o_comment(); /* Test routines for comment */ test_h5o_comment_by_name(); /* Test routines for comment by name */ test_h5o_getinfo_same_file(); /* Test info for objects in the same file */ +#ifndef H5_NO_DEPRECATED_SYMBOLS + test_h5o_getinfo_visit(); /* Test object info for H5Oget_info1/2 and H5Ovisit1 */ +#endif } /* test_h5o() */ diff --git a/test/titerate.c b/test/titerate.c index 82c26eb..de652a7 100644 --- a/test/titerate.c +++ b/test/titerate.c @@ -213,7 +213,7 @@ test_iter_group(hid_t fapl, hbool_t new_format) ret = (herr_t)H5Lget_name_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, dataset_name, (size_t)NAMELEN, H5P_DEFAULT); CHECK(ret, FAIL, "H5Lget_name_by_idx"); - ret = H5Oget_info_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_idx"); } /* end for */ @@ -239,7 +239,7 @@ test_iter_group(hid_t fapl, hbool_t new_format) ret = (herr_t)H5Lget_name_by_idx(file, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, dataset_name, (size_t)NAMELEN, H5P_DEFAULT); CHECK(ret, FAIL, "H5Lget_name_by_idx"); - ret = H5Oget_info_by_idx(file, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(file, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_idx"); } /* end for */ @@ -553,7 +553,7 @@ liter_cb2(hid_t loc_id, const char *name, const H5L_info_t H5_ATTR_UNUSED *link_ /* * Get type of the object and check it. */ - ret = H5Oget_info_by_name(loc_id, name, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(loc_id, name, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); if(test_info->type != oinfo.type) { @@ -797,7 +797,7 @@ static void test_grp_memb_funcs(hid_t fapl) obj_names[i] = HDstrdup(dataset_name); CHECK_PTR(obj_names[i], "strdup"); - ret = H5Oget_info_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_idx"); if(!HDstrcmp(dataset_name, "grp")) @@ -891,7 +891,7 @@ static void test_links(hid_t fapl) /* Get object type */ if(linfo.type == H5L_TYPE_HARD) { - ret = H5Oget_info_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_idx"); } /* end if */ diff --git a/test/tmisc.c b/test/tmisc.c index 4a77b51..07234e9 100644 --- a/test/tmisc.c +++ b/test/tmisc.c @@ -674,11 +674,11 @@ test_misc4(void) CHECK(group3, FAIL, "H5Gcreate2"); /* Get the stat information for each group */ - ret = H5Oget_info_by_name(file1, MISC4_GROUP_1, &oinfo1, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file1, MISC4_GROUP_1, &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); - ret = H5Oget_info_by_name(file1, MISC4_GROUP_2, &oinfo2, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file1, MISC4_GROUP_2, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); - ret = H5Oget_info_by_name(file2, MISC4_GROUP_1, &oinfo3, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file2, MISC4_GROUP_1, &oinfo3, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); /* Verify that the fileno values are the same for groups from file1 */ @@ -2929,7 +2929,7 @@ test_misc18(void) CHECK(did1, FAIL, "H5Dcreate2"); /* Get object information */ - ret = H5Oget_info_by_name(fid, MISC18_DSET1_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, MISC18_DSET1_NAME, &oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.nmesgs, 6, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.nchunks, 1, "H5Oget_info_by_name"); @@ -2942,7 +2942,7 @@ test_misc18(void) CHECK(did2, FAIL, "H5Dcreate2"); /* Get object information */ - ret = H5Oget_info_by_name(fid, MISC18_DSET2_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, MISC18_DSET2_NAME, &oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.nmesgs, 6, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.nchunks, 1, "H5Oget_info_by_name"); @@ -2975,7 +2975,7 @@ test_misc18(void) } /* end for */ /* Get object information for dataset #1 now */ - ret = H5Oget_info_by_name(fid, MISC18_DSET1_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, MISC18_DSET1_NAME, &oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.nmesgs, 24, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.nchunks, 9, "H5Oget_info_by_name"); @@ -2984,7 +2984,7 @@ test_misc18(void) VERIFY(oinfo.num_attrs, 10, "H5Oget_info_by_name"); /* Get object information for dataset #2 now */ - ret = H5Oget_info_by_name(fid, MISC18_DSET2_NAME, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, MISC18_DSET2_NAME, &oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.nmesgs, 24, "H5Oget_info_by_name"); VERIFY(oinfo.hdr.nchunks, 9, "H5Oget_info_by_name"); @@ -3958,7 +3958,7 @@ test_misc23(void) tmp_id = H5Gopen2(file_id, "/A/B01", H5P_DEFAULT); CHECK(tmp_id, FAIL, "H5Gopen2"); - status = H5Oget_info(tmp_id, &oinfo); + status = H5Oget_info2(tmp_id, &oinfo, H5O_INFO_BASIC); CHECK(status, FAIL, "H5Oget_info"); VERIFY(oinfo.rc, 1, "H5Oget_info"); @@ -5238,7 +5238,7 @@ test_misc30_get_info_cb(hid_t loc_id, const char *name, const H5L_info_t H5_ATTR { H5O_info_t object_info; - return H5Oget_info_by_name(loc_id, name, &object_info, H5P_DEFAULT); + return H5Oget_info_by_name2(loc_id, name, &object_info, H5O_INFO_BASIC, H5P_DEFAULT); } static int @@ -5504,19 +5504,19 @@ test_misc33(void) /* Case (1) */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_name(fid, "/soft_two", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "/soft_two", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; VERIFY(ret, FAIL, "H5Oget_info_by_name"); /* Case (2) */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_name(fid, "/dsetA", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "/dsetA", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; VERIFY(ret, FAIL, "H5Oget_info_by_name"); /* Case (3) */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_name(fid, "/soft_one", &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(fid, "/soft_one", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; VERIFY(ret, FAIL, "H5Oget_info_by_name"); diff --git a/test/trefer.c b/test/trefer.c index 7cbb77f..4f76cb3 100644 --- a/test/trefer.c +++ b/test/trefer.c @@ -1411,7 +1411,7 @@ test_reference_group(void) CHECK(size, FAIL, "H5Lget_name_by_idx"); VERIFY_STR(objname, DSETNAME2, "H5Lget_name_by_idx"); - ret = H5Oget_info_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_idx2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_idx"); VERIFY(oinfo.type, H5O_TYPE_DATASET, "H5Oget_info_by_idx"); diff --git a/test/tsohm.c b/test/tsohm.c index 133b196..d00a03a 100644 --- a/test/tsohm.c +++ b/test/tsohm.c @@ -839,7 +839,7 @@ static void test_sohm_size1(void) CHECK_I(file, "size1_helper"); /* Get the size of a dataset object header */ - ret = H5Oget_info_by_name(file, DSETNAME[0], &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file, DSETNAME[0], &oinfo, H5O_INFO_HDR, H5P_DEFAULT); CHECK_I(ret, "H5Oget_info_by_name"); ret = H5Fclose(file); CHECK_I(ret, "H5Fclose"); @@ -894,7 +894,7 @@ static void test_sohm_size1(void) CHECK_I(file, "size1_helper"); /* Get the size of a dataset object header */ - ret = H5Oget_info_by_name(file, DSETNAME[0], &oinfo, H5P_DEFAULT); + ret = H5Oget_info_by_name2(file, DSETNAME[0], &oinfo, H5O_INFO_HDR, H5P_DEFAULT); CHECK_I(ret, "H5Oget_info_by_name"); ret = H5Fclose(file); CHECK_I(ret, "H5Fclose"); diff --git a/test/ttsafe.c b/test/ttsafe.c index ae4d7c5..89c87a3 100644 --- a/test/ttsafe.c +++ b/test/ttsafe.c @@ -27,14 +27,8 @@ * Each test module should include ttsafe.h and define a unique set of * names for test files they create. * - * BUGS/LIMITATIONS - * - * EXPORTED ROUTINES/VARIABLES: - * */ -#include "h5test.h" - /* ANY new test needs to have a prototype in ttsafe.h */ #include "ttsafe.h" @@ -120,7 +114,7 @@ int main(int argc, char *argv[]) #else /* H5_HAVE_THREADSAFE */ - printf("Most thread-safety tests skipped because THREADSAFE not enabled\n"); + HDprintf("Most thread-safety tests skipped because THREADSAFE not enabled\n"); #endif /* H5_HAVE_THREADSAFE */ diff --git a/test/ttsafe_acreate.c b/test/ttsafe_acreate.c index 42d0851..5c08d09 100644 --- a/test/ttsafe_acreate.c +++ b/test/ttsafe_acreate.c @@ -26,31 +26,15 @@ * dataset), there is a small chance that consecutive reads occur * before a write to that shared variable. * - * HDF5 APIs exercised in thread: - * H5Acreate2, H5Awrite, H5Aclose. - * * Created: Oct 5 1999 * Programmer: Chee Wai LEE * - * Modification History - * -------------------- - * - * 15 May 2000, Chee Wai LEE - * Incorporated into library tests. - * - * 19 May 2000, Bill Wendling - * Changed so that it creates its own HDF5 file and removes it at cleanup - * time. - * ********************************************************************/ #include "ttsafe.h" #ifdef H5_HAVE_THREADSAFE -#include <stdio.h> -#include <stdlib.h> - #define FILENAME "ttsafe_acreate.h5" #define DATASETNAME "IntData" #define NUM_THREADS 16 @@ -64,20 +48,24 @@ typedef struct acreate_data_struct { int current_index; } ttsafe_name_data_t; -void tts_acreate(void) +void +tts_acreate(void) { /* Thread declarations */ H5TS_thread_t threads[NUM_THREADS]; /* HDF5 data declarations */ - hid_t file, dataset; - hid_t dataspace, datatype; - hid_t attribute; + hid_t file = H5I_INVALID_HID; + hid_t dataset = H5I_INVALID_HID; + hid_t dataspace = H5I_INVALID_HID; + hid_t datatype = H5I_INVALID_HID; + hid_t attribute = H5I_INVALID_HID; hsize_t dimsf[1]; /* dataset dimensions */ /* data declarations */ int data; /* data to write */ - int buffer, ret, i; + int buffer, i; + herr_t status; ttsafe_name_data_t *attrib_data; @@ -86,25 +74,27 @@ void tts_acreate(void) * creation plist and default file access plist */ file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - assert(file>=0); + CHECK(file, H5I_INVALID_HID, "H5Fcreate"); /* create a simple dataspace for the dataset */ dimsf[0] = 1; dataspace = H5Screate_simple(1, dimsf, NULL); - assert(dataspace>=0); + CHECK(dataspace, H5I_INVALID_HID, "H5Screate_simple"); /* define datatype for the data using native little endian integers */ datatype = H5Tcopy(H5T_NATIVE_INT); - H5Tset_order(datatype, H5T_ORDER_LE); + CHECK(datatype, H5I_INVALID_HID, "H5Tcopy"); + status = H5Tset_order(datatype, H5T_ORDER_LE); + CHECK(status, FAIL, "H5Tset_order"); /* create a new dataset within the file */ dataset = H5Dcreate2(file, DATASETNAME, datatype, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - assert(dataset >= 0); + CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2"); /* initialize data for dataset and write value to dataset */ data = NUM_THREADS; - ret = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &data); - assert(ret >= 0); + status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &data); + CHECK(status, FAIL, "H5Dwrite"); /* * Simultaneously create a large number of attributes to be associated @@ -117,45 +107,46 @@ void tts_acreate(void) attrib_data->dataspace = dataspace; attrib_data->current_index = i; threads[i] = H5TS_create_thread(tts_acreate_thread, NULL, attrib_data); - } /* end for */ + } - for(i = 0; i < NUM_THREADS; i++) { + for(i = 0; i < NUM_THREADS; i++) H5TS_wait_for_thread(threads[i]); - } /* end for */ - /* verify the correctness of the test */ for(i = 0; i < NUM_THREADS; i++) { attribute = H5Aopen(dataset, gen_name(i), H5P_DEFAULT); + CHECK(attribute, H5I_INVALID_HID, "H5Aopen"); if(attribute < 0) TestErrPrintf("unable to open appropriate attribute. Test failed!\n"); else { - ret = H5Aread(attribute, H5T_NATIVE_INT, &buffer); - - if(ret < 0 || buffer != i) - TestErrPrintf("wrong data values. Test failed!\n"); + status = H5Aread(attribute, H5T_NATIVE_INT, &buffer); + CHECK(status, FAIL, "H5Aread"); + VERIFY(buffer, i, "data values don't match"); - H5Aclose(attribute); - } /* end else */ - } /* end for */ + status = H5Aclose(attribute); + CHECK(status, FAIL, "H5Aclose"); + } + } /* close remaining resources */ - ret = H5Sclose(dataspace); - assert(ret >= 0); - ret = H5Tclose(datatype); - assert(ret >= 0); - ret = H5Dclose(dataset); - assert(ret >= 0); - ret = H5Fclose(file); - assert(ret >= 0); -} - -void *tts_acreate_thread(void *client_data) + status = H5Sclose(dataspace); + CHECK(status, FAIL, "H5Sclose"); + status = H5Tclose(datatype); + CHECK(status, FAIL, "H5Sclose"); + status = H5Dclose(dataset); + CHECK(status, FAIL, "H5Dclose"); + status = H5Fclose(file); + CHECK(status, FAIL, "H5Fclose"); +} /* end tts_acreate() */ + +void * +tts_acreate_thread(void *client_data) { - hid_t attribute; + hid_t attribute = H5I_INVALID_HID; char *attribute_name; int *attribute_data; /* data for attributes */ + herr_t status; ttsafe_name_data_t *attrib_data; @@ -166,18 +157,23 @@ void *tts_acreate_thread(void *client_data) attribute = H5Acreate2(attrib_data->dataset, attribute_name, attrib_data->datatype, attrib_data->dataspace, H5P_DEFAULT, H5P_DEFAULT); + CHECK(attribute, H5I_INVALID_HID, "H5Acreate2"); /* Write data to the attribute */ attribute_data = (int *)HDmalloc(sizeof(int)); *attribute_data = attrib_data->current_index; - H5Awrite(attribute, H5T_NATIVE_INT, attribute_data); - H5Aclose(attribute); + status = H5Awrite(attribute, H5T_NATIVE_INT, attribute_data); + CHECK(status, FAIL, "H5Awrite"); + status = H5Aclose(attribute); + CHECK(status, FAIL, "H5Aclose"); return NULL; -} +} /* end tts_acreate_thread() */ -void cleanup_acreate(void) +void +cleanup_acreate(void) { HDunlink(FILENAME); } #endif /*H5_HAVE_THREADSAFE*/ + diff --git a/test/ttsafe_cancel.c b/test/ttsafe_cancel.c index 4bbb326..dd52232 100644 --- a/test/ttsafe_cancel.c +++ b/test/ttsafe_cancel.c @@ -27,20 +27,9 @@ * Temporary files generated: * ttsafe_cancel.h5 * - * HDF5 APIs exercised in thread: - * H5Screate_simple, H5Tcopy, H5Tset_order, H5Dcreate2, H5Dclose, - * H5Dwrite, H5Dread, H5Diterate, H5Tclose, H5Sclose. - * * Created: May 15 2000 * Programmer: Chee Wai LEE * - * Modification History - * -------------------- - * - * 19 May 2000, Bill Wendling - * Changed so that it creates its own HDF5 file and removes it at cleanup - * time. - * ********************************************************************/ #include "ttsafe.h" @@ -66,7 +55,8 @@ pthread_t childthread; pthread_mutex_t mutex; pthread_cond_t cond; -void tts_cancel(void) +void +tts_cancel(void) { pthread_attr_t attribute; hid_t dataset; @@ -116,31 +106,34 @@ void tts_cancel(void) /* Destroy the thread attribute */ ret=pthread_attr_destroy(&attribute); assert(ret==0); -} +} /* end tts_cancel() */ -void *tts_cancel_thread(void H5_ATTR_UNUSED *arg) +void * +tts_cancel_thread(void H5_ATTR_UNUSED *arg) { + hid_t dataspace = H5I_INVALID_HID; + hid_t datatype = H5I_INVALID_HID; + hid_t dataset = H5I_INVALID_HID; int datavalue; int buffer; - hid_t dataspace, datatype, dataset; hsize_t dimsf[1]; /* dataset dimensions */ cancel_cleanup_t *cleanup_structure; - int ret; + herr_t status; /* define dataspace for dataset */ dimsf[0] = 1; dataspace = H5Screate_simple(1, dimsf, NULL); - assert(dataspace >= 0); + CHECK(dataspace, H5I_INVALID_HID, "H5Screate_simple"); /* define datatype for the data using native little endian integers */ datatype = H5Tcopy(H5T_NATIVE_INT); - assert(datatype >= 0); - ret = H5Tset_order(datatype, H5T_ORDER_LE); - assert(ret >= 0); + CHECK(datatype, H5I_INVALID_HID, "H5Tcopy"); + status = H5Tset_order(datatype, H5T_ORDER_LE); + CHECK(status, FAIL, "H5Tset_order"); /* create a new dataset within the file */ dataset = H5Dcreate2(cancel_file, DATASETNAME, datatype, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - assert(dataset >= 0); + CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2"); /* If thread is cancelled, make cleanup call */ cleanup_structure = (cancel_cleanup_t*)HDmalloc(sizeof(cancel_cleanup_t)); @@ -151,25 +144,26 @@ void *tts_cancel_thread(void H5_ATTR_UNUSED *arg) datavalue = 1; - ret=H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &datavalue); - assert(ret>=0); + status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &datavalue); + CHECK(status, FAIL, "H5Dwrite"); - ret=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &buffer); - assert(ret>=0); - ret=H5Diterate(&buffer, H5T_NATIVE_INT, dataspace, tts_cancel_callback, &dataset); - assert(ret>=0); + status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &buffer); + CHECK(status, FAIL, "H5Dread"); + status = H5Diterate(&buffer, H5T_NATIVE_INT, dataspace, tts_cancel_callback, &dataset); + CHECK(status, FAIL, "H5Diterate"); HDsleep(3); datavalue = 100; - ret=H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &datavalue); - assert(ret>=0); - ret=H5Dclose(dataset); - assert(ret>=0); - ret=H5Tclose(datatype); - assert(ret>=0); - ret=H5Sclose(dataspace); - assert(ret>=0); + status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &datavalue); + CHECK(status, FAIL, "H5Dwrite"); + + status = H5Dclose(dataset); + CHECK(status, FAIL, "H5Dclose"); + status = H5Tclose(datatype); + CHECK(status, FAIL, "H5Tclose"); + status = H5Sclose(dataspace); + CHECK(status, FAIL, "H5Sclose"); /* * Required by pthreads. The argument 0 pops the stack but does not @@ -178,73 +172,78 @@ void *tts_cancel_thread(void H5_ATTR_UNUSED *arg) pthread_cleanup_pop(0); return NULL; -} +} /* end tts_cancel_thread() */ -herr_t tts_cancel_callback(void *elem, hid_t H5_ATTR_UNUSED type_id, unsigned H5_ATTR_UNUSED ndim, +herr_t +tts_cancel_callback(void *elem, hid_t H5_ATTR_UNUSED type_id, unsigned H5_ATTR_UNUSED ndim, const hsize_t H5_ATTR_UNUSED *point, void *operator_data) { - int value = *(int *)elem; hid_t dataset = *(hid_t *)operator_data; - int ret; + int value = *(int *)elem; + herr_t status; tts_cancel_barrier(); HDsleep(3); if (value != 1) { TestErrPrintf("Error! Element value should be 1 and not %d\n", value); - return -1; + return FAIL; } value += 10; - ret=H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &value); - assert(ret>=0); - return 0; -} + status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &value); + CHECK(status, FAIL, "H5Dwrite"); + + return SUCCEED; +} /* end tts_cancel_callback() */ /* * Need to perform the dataset, datatype and dataspace close that was never * performed because of thread cancellation */ -void cancellation_cleanup(void *arg) +void +cancellation_cleanup(void *arg) { cancel_cleanup_t *cleanup_structure = (cancel_cleanup_t *)arg; - int ret; + herr_t status; - ret=H5Dclose(cleanup_structure->dataset); - assert(ret>=0); - ret=H5Tclose(cleanup_structure->datatype); - assert(ret>=0); - ret=H5Sclose(cleanup_structure->dataspace); - assert(ret>=0); + status = H5Dclose(cleanup_structure->dataset); + CHECK(status, FAIL, "H5Dclose"); + status = H5Tclose(cleanup_structure->datatype); + CHECK(status, FAIL, "H5Tclose"); + status = H5Sclose(cleanup_structure->dataspace); + CHECK(status, FAIL, "H5Sclose"); /* retained for debugging */ /* print_func("cancellation noted, cleaning up ... \n"); */ -} +} /* end cancellation_cleanup() */ /* * Artificial (and specific to this test) barrier to keep track of whether * both the main and child threads have reached a point in the program. */ -void tts_cancel_barrier(void) +void +tts_cancel_barrier(void) { static int count = 2; - int ret; + int status; - ret=pthread_mutex_lock(&mutex); - assert(ret==0); + status = pthread_mutex_lock(&mutex); + VERIFY(status, 0, "pthread_mutex_lock"); if (count != 1) { count--; - ret=pthread_cond_wait(&cond, &mutex); - assert(ret==0); - } else { - ret=pthread_cond_signal(&cond); - assert(ret==0); + status = pthread_cond_wait(&cond, &mutex); + VERIFY(status, 0, "pthread_cond_wait"); + } + else { + status = pthread_cond_signal(&cond); + VERIFY(status, 0, "pthread_cond_signal"); } - ret=pthread_mutex_unlock(&mutex); - assert(ret==0); -} + status = pthread_mutex_unlock(&mutex); + VERIFY(status, 0, "pthread_mutex_unlock"); +} /* end tts_cancel_barrier() */ void cleanup_cancel(void) { @@ -253,3 +252,4 @@ void cleanup_cancel(void) #endif /*H5_HAVE_WIN_THREADS*/ #endif /*H5_HAVE_THREADSAFE*/ + diff --git a/test/ttsafe_dcreate.c b/test/ttsafe_dcreate.c index 65051c7..36b5f1f 100644 --- a/test/ttsafe_dcreate.c +++ b/test/ttsafe_dcreate.c @@ -23,20 +23,9 @@ * Temporary files generated: * ttsafe_dcreate.h5 * - * HDF5 APIs exercised in thread: - * H5Screate_simple, H5Tcopy, H5Tset_order, H5Dcreate2, H5Dwrite, H5Dclose, - * H5Tclose, H5Sclose. - * * Created: Apr 28 2000 * Programmer: Chee Wai LEE * - * Modification History - * -------------------- - * - * 19 May 2000, Bill Wendling - * Changed so that it creates its own HDF5 file and removes it at cleanup - * time. - * ********************************************************************/ #include "ttsafe.h" @@ -83,16 +72,18 @@ thread_info thread_out[NUM_THREAD]; * Thread safe test - multiple dataset creation ********************************************************************** */ -void tts_dcreate(void) +void +tts_dcreate(void) { /* thread definitions */ H5TS_thread_t threads[NUM_THREAD]; /* HDF5 data definitions */ - hid_t file, dataset; + hid_t file = H5I_INVALID_HID; + hid_t dataset = H5I_INVALID_HID; int datavalue, i; H5TS_attr_t attribute; - int ret; + herr_t status; /* set pthread attribute to perform global scheduling */ H5TS_attr_init(&attribute); @@ -107,7 +98,7 @@ void tts_dcreate(void) * creation plist and default file access plist */ file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - assert(file >= 0); + CHECK(file, H5I_INVALID_HID, "H5Fcreate"); /* simultaneously create a large number of datasets within the file */ for(i = 0; i < NUM_THREAD; i++) { @@ -115,11 +106,10 @@ void tts_dcreate(void) thread_out[i].file = file; thread_out[i].dsetname = dsetname[i]; threads[i] = H5TS_create_thread(tts_dcreate_creator, NULL, &thread_out[i]); - } /* end for */ + } - for(i = 0;i < NUM_THREAD; i++) { + for(i = 0;i < NUM_THREAD; i++) H5TS_wait_for_thread(threads[i]); - } /* end for */ /* compare data to see if it is written correctly */ @@ -129,36 +119,38 @@ void tts_dcreate(void) H5Fclose(file); return; } else { - ret = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &datavalue); - assert(ret >= 0); + status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &datavalue); + CHECK(status, FAIL, "H5Dread"); if(datavalue != i) { TestErrPrintf("Wrong value read %d for dataset name %s - test failed\n", datavalue, dsetname[i]); - ret = H5Dclose(dataset); - assert(ret >= 0); - ret = H5Fclose(file); - assert(ret >= 0); + status = H5Dclose(dataset); + CHECK(status, FAIL, "H5Dclose"); + status = H5Fclose(file); + CHECK(status, FAIL, "H5Fclose"); return; } - ret = H5Dclose(dataset); - assert(ret >= 0); + status= H5Dclose(dataset); + CHECK(status, FAIL, "H5Dclose"); } } /* close remaining resources */ - ret = H5Fclose(file); - assert(ret >= 0); + status = H5Fclose(file); + CHECK(status, FAIL, "H5Fclose"); /* Destroy the thread attribute */ H5TS_attr_destroy(&attribute); -} +} /* end tts_dcreate() */ -void *tts_dcreate_creator(void *_thread_data) +void * +tts_dcreate_creator(void *_thread_data) { - hid_t dataspace, dataset; - herr_t ret; + hid_t dataspace = H5I_INVALID_HID; + hid_t dataset = H5I_INVALID_HID; + herr_t status; hsize_t dimsf[1]; /* dataset dimensions */ struct thread_info thread_data; @@ -167,28 +159,29 @@ void *tts_dcreate_creator(void *_thread_data) /* define dataspace for dataset */ dimsf[0] = 1; dataspace = H5Screate_simple(1, dimsf, NULL); - assert(dataspace >= 0); + CHECK(dataspace, H5I_INVALID_HID, "H5Screate_simple"); /* create a new dataset within the file */ dataset = H5Dcreate2(thread_data.file, thread_data.dsetname, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - assert(dataset >= 0); + CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2"); /* initialize data for dataset and write value to dataset */ - ret = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, + status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &thread_data.id); - assert(ret >= 0); + CHECK(status, FAIL, "H5Dwrite"); /* close dataset and dataspace resources */ - ret = H5Dclose(dataset); - assert(ret >= 0); - ret = H5Sclose(dataspace); - assert(ret >= 0); + status = H5Dclose(dataset); + CHECK(status, FAIL, "H5Dclose"); + status = H5Sclose(dataspace); + CHECK(status, FAIL, "H5Sclose"); return NULL; -} +} /* end tts_dcreate_creator() */ -void cleanup_dcreate(void) +void +cleanup_dcreate(void) { HDunlink(FILENAME); } diff --git a/test/ttsafe_error.c b/test/ttsafe_error.c index f88e77d..4160d3a 100644 --- a/test/ttsafe_error.c +++ b/test/ttsafe_error.c @@ -25,21 +25,9 @@ * * ttsafe_error.h5 * - * HDF5 APIs exercised in thread: - * - * H5Screate_simple, H5Tcopy, H5Tset_order, H5Dcreate2, H5Dclose, - * H5Tclose, H5Sclose. - * * Created: Apr 28 2000 * Programmer: Chee Wai LEE * - * Modification History - * -------------------- - * - * 19 May 2000, Bill Wendling - * Modified so that it creates a unique HDF5 file and removes it on - * cleanup. - * ********************************************************************/ #include "ttsafe.h" @@ -49,181 +37,191 @@ #define FILENAME "ttsafe_error.h5" /* Having a common dataset name is an error */ -#define DATASETNAME "commonname" -#define EXPECTED_ERROR_DEPTH 8 -#define WRITE_NUMBER 37 - -static herr_t error_callback(hid_t , void *); -static herr_t walk_error_callback(unsigned, const H5E_error2_t *, void *); -static void *tts_error_thread(void *); - -/* Global variables */ -hid_t error_file; +#define DATASETNAME "commonname" +#define EXPECTED_ERROR_DEPTH 7 +#define WRITE_NUMBER 37 +/* Typedefs */ typedef struct err_num_struct { hid_t maj_num; hid_t min_num; } err_num_t; -err_num_t expected[8]; +/* Global variables */ +hid_t error_file_g = H5I_INVALID_HID; +int error_flag_g = 0; +int error_count_g = 0; +err_num_t expected_g[EXPECTED_ERROR_DEPTH]; +H5TS_mutex_simple_t error_mutex_g; + +/* Prototypes */ +static herr_t error_callback(hid_t , void *); +static herr_t walk_error_callback(unsigned, const H5E_error2_t *, void *); +static void *tts_error_thread(void *); -int error_flag = 0; -int error_count = 0; -H5TS_mutex_simple_t error_mutex; -void tts_error(void) +void +tts_error(void) { - H5TS_thread_t threads[NUM_THREAD]; - H5TS_attr_t attribute; - hid_t dataset; - int value, i; - int ret; + hid_t dataset = H5I_INVALID_HID; + H5TS_thread_t threads[NUM_THREAD]; + H5TS_attr_t attribute; + int value, i; + herr_t status; /* Must initialize these at runtime */ - expected[0].maj_num = H5E_DATASET; - expected[0].min_num = H5E_CANTINIT; + expected_g[0].maj_num = H5E_DATASET; + expected_g[0].min_num = H5E_CANTINIT; - expected[1].maj_num = H5E_DATASET; - expected[1].min_num = H5E_CANTINIT; + expected_g[1].maj_num = H5E_DATASET; + expected_g[1].min_num = H5E_CANTINIT; - expected[2].maj_num = H5E_LINK; - expected[2].min_num = H5E_CANTINIT; + expected_g[2].maj_num = H5E_LINK; + expected_g[2].min_num = H5E_CANTINIT; - expected[3].maj_num = H5E_LINK; - expected[3].min_num = H5E_CANTINSERT; + expected_g[3].maj_num = H5E_LINK; + expected_g[3].min_num = H5E_CANTINSERT; - expected[4].maj_num = H5E_SYM; - expected[4].min_num = H5E_NOTFOUND; + expected_g[4].maj_num = H5E_SYM; + expected_g[4].min_num = H5E_NOTFOUND; - expected[5].maj_num = H5E_SYM; - expected[5].min_num = H5E_CALLBACK; + expected_g[5].maj_num = H5E_SYM; + expected_g[5].min_num = H5E_CALLBACK; - expected[6].maj_num = H5E_LINK; - expected[6].min_num = H5E_EXISTS; + expected_g[6].maj_num = H5E_LINK; + expected_g[6].min_num = H5E_EXISTS; /* set up mutex for global count of errors */ - H5TS_mutex_init(&error_mutex); + H5TS_mutex_init(&error_mutex_g); /* make thread scheduling global */ H5TS_attr_init(&attribute); - /* set thread scope to system */ - #ifdef H5_HAVE_SYSTEM_SCOPE_THREADS + /* set thread scope to system */ H5TS_attr_setscope(&attribute, H5TS_SCOPE_SYSTEM); #endif /* H5_HAVE_SYSTEM_SCOPE_THREADS */ - /* - * Create a hdf5 file using H5F_ACC_TRUNC access, default file + /* Create a hdf5 file using H5F_ACC_TRUNC access, default file * creation plist and default file access plist */ - error_file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - assert(error_file>=0); + error_file_g = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + CHECK(error_file_g, H5I_INVALID_HID, "H5Fcreate"); - for (i = 0; i < NUM_THREAD; i++){ + for (i = 0; i < NUM_THREAD; i++) threads[i] = H5TS_create_thread(tts_error_thread, &attribute, NULL); - } - for (i = 0; i < NUM_THREAD; i++){ + for (i = 0; i < NUM_THREAD; i++) H5TS_wait_for_thread(threads[i]); - } - if (error_flag) - TestErrPrintf("Threads reporting different error values!\n"); + if (error_flag_g) { + TestErrPrintf("At least one thread reported a value that was different from the exected value\n"); + HDprintf("(Update this test if the error stack changed!)\n"); + } - if (error_count != NUM_THREAD - 1) - TestErrPrintf("Error: %d threads failed instead of %d\n", error_count, NUM_THREAD-1); + if (error_count_g != NUM_THREAD - 1) + TestErrPrintf("Error: %d threads failed instead of %d\n", error_count_g, NUM_THREAD-1); - dataset = H5Dopen2(error_file, DATASETNAME, H5P_DEFAULT); - assert(dataset >= 0); + dataset = H5Dopen2(error_file_g, DATASETNAME, H5P_DEFAULT); + CHECK(dataset, H5I_INVALID_HID, "H5Dopen2"); - ret=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &value); - assert(ret>=0); + status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &value); + CHECK(status, FAIL, "H5Dread"); if (value != WRITE_NUMBER) TestErrPrintf("Error: Successful thread wrote value %d instead of %d\n", value, WRITE_NUMBER); - ret=H5Dclose(dataset); - assert(ret>=0); - ret=H5Fclose(error_file); - assert(ret>=0); + status = H5Dclose(dataset); + CHECK(status, FAIL, "H5Dclose"); + status = H5Fclose(error_file_g); + CHECK(status, FAIL, "H5Fclose"); H5TS_attr_destroy(&attribute); -} +} /* end tts_error() */ -static -void *tts_error_thread(void H5_ATTR_UNUSED *arg) +static void * +tts_error_thread(void H5_ATTR_UNUSED *arg) { - hid_t dataspace, datatype, dataset; + hid_t dataspace = H5I_INVALID_HID; + hid_t datatype = H5I_INVALID_HID; + hid_t dataset = H5I_INVALID_HID; hsize_t dimsf[1]; /* dataset dimensions */ H5E_auto2_t old_error_cb; void *old_error_client_data; int value; - int ret; + herr_t status; /* preserve previous error stack handler */ - H5Eget_auto2(H5E_DEFAULT, &old_error_cb, &old_error_client_data); + status = H5Eget_auto2(H5E_DEFAULT, &old_error_cb, &old_error_client_data); + CHECK(status, FAIL, "H5Eget_auto2"); /* set each thread's error stack handler */ - H5Eset_auto2(H5E_DEFAULT, error_callback, NULL); + status = H5Eset_auto2(H5E_DEFAULT, error_callback, NULL); + CHECK(status, FAIL, "H5Eset_auto2"); /* define dataspace for dataset */ dimsf[0] = 1; dataspace = H5Screate_simple(1, dimsf, NULL); - assert(dataspace >= 0); + CHECK(dataspace, H5I_INVALID_HID, "H5Screate_simple"); /* define datatype for the data using native little endian integers */ datatype = H5Tcopy(H5T_NATIVE_INT); - assert(datatype >= 0); - H5Tset_order(datatype, H5T_ORDER_LE); + CHECK(datatype, H5I_INVALID_HID, "H5Tcopy"); + status = H5Tset_order(datatype, H5T_ORDER_LE); + CHECK(status, FAIL, "H5Tset_order"); /* create a new dataset within the file */ - dataset = H5Dcreate2(error_file, DATASETNAME, datatype, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if(dataset >= 0) { /* not an error */ + dataset = H5Dcreate2(error_file_g, DATASETNAME, datatype, dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + /* Most of these will fail, so don't check the error here */ + if (dataset >= 0) { value = WRITE_NUMBER; - H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &value); - H5Dclose(dataset); - } /* end if */ + status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &value); + CHECK(status, FAIL, "H5Dwrite"); + status = H5Dclose(dataset); + CHECK(status, FAIL, "H5Dclose"); + } - ret = H5Tclose(datatype); - assert(ret >= 0); - ret = H5Sclose(dataspace); - assert(ret >= 0); + status = H5Tclose(datatype); + CHECK(status, FAIL, "H5Tclose"); + status = H5Sclose(dataspace); + CHECK(status, FAIL, "H5Sclose"); /* turn our error stack handler off */ - H5Eset_auto2(H5E_DEFAULT, old_error_cb, old_error_client_data); + status = H5Eset_auto2(H5E_DEFAULT, old_error_cb, old_error_client_data); + CHECK(status, FAIL, "H5Eset_auto2"); return NULL; -} +} /* end tts_error_thread() */ -static -herr_t error_callback(hid_t H5_ATTR_UNUSED estack_id, void *client_data) +static herr_t +error_callback(hid_t H5_ATTR_UNUSED estack_id, void *client_data) { - H5TS_mutex_lock_simple(&error_mutex); - error_count++; - H5TS_mutex_unlock_simple(&error_mutex); + H5TS_mutex_lock_simple(&error_mutex_g); + error_count_g++; + H5TS_mutex_unlock_simple(&error_mutex_g); return H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, client_data); } -static -herr_t walk_error_callback(unsigned n, const H5E_error2_t *err_desc, void H5_ATTR_UNUSED *client_data) +static herr_t +walk_error_callback(unsigned n, const H5E_error2_t *err_desc, void H5_ATTR_UNUSED *client_data) { - hid_t maj_num, min_num; + hid_t maj_num = H5I_INVALID_HID; + hid_t min_num = H5I_INVALID_HID; if (err_desc) { maj_num = err_desc->maj_num; min_num = err_desc->min_num; - if (n < EXPECTED_ERROR_DEPTH && maj_num == expected[n].maj_num && - min_num == expected[n].min_num) + if (n <= EXPECTED_ERROR_DEPTH && maj_num == expected_g[n].maj_num && min_num == expected_g[n].min_num) return SUCCEED; } - error_flag = -1; + error_flag_g = -1; return SUCCEED; } -void cleanup_error(void) +void +cleanup_error(void) { HDunlink(FILENAME); } diff --git a/test/unlink.c b/test/unlink.c index f5754f8..2a7bbcd 100644 --- a/test/unlink.c +++ b/test/unlink.c @@ -446,9 +446,9 @@ check_new_move(hid_t fapl) FAIL_STACK_ERROR /* Get hard link info */ - if(H5Oget_info_by_name(file, "/group2/group_new_name", &oi_hard1, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, "/group2/group_new_name", &oi_hard1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name(file, "/group1/hard", &oi_hard2, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file, "/group1/hard", &oi_hard2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Check hard links */ @@ -2228,7 +2228,7 @@ test_full_group_compact(hid_t fapl) /* Check reference count on objects to keep */ for(u = 0; u < FULL_GROUP_NUM_KEEP; u++) { sprintf(objname, "/keep/keep %u\n", u); - if(H5Oget_info_by_name(file_id, objname, &oi, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(oi.rc != 2) TEST_ERROR } /* end for */ @@ -2245,7 +2245,7 @@ test_full_group_compact(hid_t fapl) /* Check reference count on objects to keep */ for(u = 0; u < FULL_GROUP_NUM_KEEP; u++) { sprintf(objname, "/keep/keep %u\n", u); - if(H5Oget_info_by_name(file_id, objname, &oi, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(oi.rc != 1) TEST_ERROR } /* end for */ @@ -2374,7 +2374,7 @@ test_full_group_dense(hid_t fapl) /* Check reference count on objects to keep */ for(u = 0; u < FULL_GROUP_NUM_KEEP; u++) { sprintf(objname, "/keep/keep %u\n", u); - if(H5Oget_info_by_name(file_id, objname, &oi, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(oi.rc != 2) TEST_ERROR } /* end for */ @@ -2391,7 +2391,7 @@ test_full_group_dense(hid_t fapl) /* Check reference count on objects to keep */ for(u = 0; u < FULL_GROUP_NUM_KEEP; u++) { sprintf(objname, "/keep/keep %u\n", u); - if(H5Oget_info_by_name(file_id, objname, &oi, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(oi.rc != 1) TEST_ERROR } /* end for */ @@ -372,7 +372,7 @@ test_api_get_ex_dcpl(test_api_config_t config, hid_t fapl, hid_t dcpl, TEST_ERROR /* Test H5Oget_info returns correct metadata size */ - if(H5Oget_info(dset, &oinfo) < 0) + if(H5Oget_info2(dset, &oinfo, H5O_INFO_META_SIZE) < 0) TEST_ERROR if(oinfo.meta_size.obj.index_size != (hsize_t)0) TEST_ERROR diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index 94cca58..28b1f00 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -433,7 +433,7 @@ trav_grp_symlinks(const char *path, const H5L_info_t *linfo, void *udata) HGOTO_DONE(0); if(h5trav_visit(tinfo->fid, path, TRUE, TRUE, - trav_grp_objs,trav_grp_symlinks, tinfo) < 0) { + trav_grp_objs,trav_grp_symlinks, tinfo, H5O_INFO_BASIC) < 0) { parallel_print("Error: Could not get file contents\n"); opts->err_stat = 1; HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Error: Could not get file contents"); @@ -465,7 +465,7 @@ trav_grp_symlinks(const char *path, const H5L_info_t *linfo, void *udata) HGOTO_DONE(0); if(h5trav_visit(tinfo->fid, path, TRUE, TRUE, - trav_grp_objs,trav_grp_symlinks, tinfo) < 0) { + trav_grp_objs,trav_grp_symlinks, tinfo, H5O_INFO_BASIC) < 0) { parallel_print("Error: Could not get file contents\n"); opts->err_stat = 1; HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Error: Could not get file contents\n"); @@ -645,7 +645,7 @@ h5diff(const char *fname1, /* optional data pass */ info1_obj->opts = (diff_opt_t*)opts; - if(H5Oget_info_by_name(file1_id, obj1fullname, &oinfo1, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name2(file1_id, obj1fullname, &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { parallel_print("Error: Could not get file contents\n"); HGOTO_ERROR(1, H5E_tools_min_id_g, "Error: Could not get file contents"); } @@ -695,7 +695,7 @@ h5diff(const char *fname1, /* optional data pass */ info2_obj->opts = (diff_opt_t*)opts; - if(H5Oget_info_by_name(file2_id, obj2fullname, &oinfo2, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name2(file2_id, obj2fullname, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { parallel_print("Error: Could not get file contents\n"); HGOTO_ERROR(1, H5E_tools_min_id_g, "Error: Could not get file contents"); } @@ -846,7 +846,7 @@ h5diff(const char *fname1, info1_grp->opts = (diff_opt_t*)opts; if(h5trav_visit(file1_id, obj1fullname, TRUE, TRUE, - trav_grp_objs, trav_grp_symlinks, info1_grp) < 0) { + trav_grp_objs, trav_grp_symlinks, info1_grp, H5O_INFO_BASIC) < 0) { parallel_print("Error: Could not get file contents\n"); HGOTO_ERROR(1, H5E_tools_min_id_g, "Could not get file contents"); } @@ -860,7 +860,7 @@ h5diff(const char *fname1, info2_grp->opts = (diff_opt_t*)opts; if(h5trav_visit(file2_id, obj2fullname, TRUE, TRUE, - trav_grp_objs, trav_grp_symlinks, info2_grp) < 0) { + trav_grp_objs, trav_grp_symlinks, info2_grp, H5O_INFO_BASIC) < 0) { parallel_print("Error: Could not get file contents\n"); HGOTO_ERROR(1, H5E_tools_min_id_g, "Could not get file contents"); } /* end if */ diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index 11f5e41..9d5f062 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -2096,8 +2096,8 @@ static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t if (nfound_b && opts->m_verbose) { H5O_info_t oi1, oi2; - H5Oget_info(obj1_id, &oi1); - H5Oget_info(obj2_id, &oi2); + H5Oget_info2(obj1_id, &oi1, H5O_INFO_BASIC); + H5Oget_info2(obj2_id, &oi2, H5O_INFO_BASIC); parallel_print("Referenced dataset %lu %lu\n", (unsigned long) oi1.addr, (unsigned long) oi2.addr); parallel_print( "------------------------------------------------------------\n"); diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c index 7f08cc7..4ad4c90 100644 --- a/tools/lib/h5diff_attr.c +++ b/tools/lib/h5diff_attr.c @@ -154,9 +154,9 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t h5difftrace("build_match_list_attrs start\n"); - if(H5Oget_info(loc1_id, &oinfo1) < 0) + if(H5Oget_info2(loc1_id, &oinfo1, H5O_INFO_NUM_ATTRS) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info first object failed"); - if(H5Oget_info(loc2_id, &oinfo2) < 0) + if(H5Oget_info2(loc2_id, &oinfo2, H5O_INFO_NUM_ATTRS) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info second object failed"); table_attrs_init(&table_lp); diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c index 11888bc..470df63 100644 --- a/tools/lib/h5tools.c +++ b/tools/lib/h5tools.c @@ -1758,14 +1758,14 @@ h5tools_is_obj_same(hid_t loc_id1, const char *name1, hbool_t ret_val = 0; if ( name1 && HDstrcmp(name1, ".")) - H5Oget_info_by_name(loc_id1, name1, &oinfo1, H5P_DEFAULT); + H5Oget_info_by_name2(loc_id1, name1, &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); else - H5Oget_info(loc_id1, &oinfo1); + H5Oget_info2(loc_id1, &oinfo1, H5O_INFO_BASIC); if ( name2 && HDstrcmp(name2, ".")) - H5Oget_info_by_name(loc_id2, name2, &oinfo2, H5P_DEFAULT); + H5Oget_info_by_name2(loc_id2, name2, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); else - H5Oget_info(loc_id2, &oinfo2); + H5Oget_info2(loc_id2, &oinfo2, H5O_INFO_BASIC); if (oinfo1.fileno == oinfo2.fileno && oinfo1.addr==oinfo2.addr) ret_val = 1; diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c index 38ace81..69cecb0 100644 --- a/tools/lib/h5tools_dump.c +++ b/tools/lib/h5tools_dump.c @@ -1905,7 +1905,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ H5O_info_t oinfo; obj_t *obj = NULL; /* Found object */ - H5Oget_info(type, &oinfo); + H5Oget_info2(type, &oinfo, H5O_INFO_BASIC); obj = search_obj(h5dump_type_table, oinfo.addr); if(obj) { diff --git a/tools/lib/h5tools_ref.c b/tools/lib/h5tools_ref.c index d6e5f01..e98a8e2 100644 --- a/tools/lib/h5tools_ref.c +++ b/tools/lib/h5tools_ref.c @@ -113,7 +113,7 @@ init_ref_path_table(void) return (-1); /* Iterate over objects in this file */ - if(h5trav_visit(thefile, "/", TRUE, TRUE, init_ref_path_cb, NULL, NULL) < 0) { + if(h5trav_visit(thefile, "/", TRUE, TRUE, init_ref_path_cb, NULL, NULL, H5O_INFO_BASIC) < 0) { error_msg("unable to construct reference path table\n"); h5tools_setstatus(EXIT_FAILURE); } /* end if */ @@ -184,7 +184,7 @@ ref_path_table_lookup(const char *thepath) /* Get the object info now */ /* (returns failure for dangling soft links) */ - if(H5Oget_info_by_name(thefile, thepath, &oi, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(thefile, thepath, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) return HADDR_UNDEF; /* Return OID */ diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c index a018394..3d595ca 100644 --- a/tools/lib/h5tools_str.c +++ b/tools/lib/h5tools_str.c @@ -1120,7 +1120,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai const char *path; obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, vp); - H5Oget_info(obj, &oi); + H5Oget_info2(obj, &oi, H5O_INFO_BASIC); /* Print object type and close object */ switch(oi.type) { diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index 5272e81..8ac0d32 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -507,7 +507,7 @@ find_objs_cb(const char *name, const H5O_info_t *oinfo, const char *already_seen if(H5Tcommitted(type) > 0) { H5O_info_t type_oinfo; - H5Oget_info(type, &type_oinfo); + H5Oget_info2(type, &type_oinfo, H5O_INFO_BASIC); if(search_obj(info->type_table, type_oinfo.addr) == NULL) add_obj(info->type_table, type_oinfo.addr, name, FALSE); } /* end if */ @@ -573,7 +573,7 @@ init_objs(hid_t fid, find_objs_t *info, table_t **group_table, info->dset_table = *dset_table; /* Find all shared objects */ - return(h5trav_visit(fid, "/", TRUE, TRUE, find_objs_cb, NULL, info)); + return(h5trav_visit(fid, "/", TRUE, TRUE, find_objs_cb, NULL, info, H5O_INFO_BASIC)); } @@ -729,7 +729,7 @@ H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_ } /* get target object info */ - if(H5Oget_info_by_name(file_id, linkpath, &trg_oinfo, lapl) < 0) { + if(H5Oget_info_by_name2(file_id, linkpath, &trg_oinfo, H5O_INFO_BASIC, lapl) < 0) { if(link_info->opt.msg_mode == 1) parallel_print("Warning: unable to get object information for <%s>\n", linkpath); HGOTO_DONE(FAIL); diff --git a/tools/lib/h5trav.c b/tools/lib/h5trav.c index b6d32f7..917d5f5 100644 --- a/tools/lib/h5trav.c +++ b/tools/lib/h5trav.c @@ -43,6 +43,7 @@ typedef struct { hbool_t is_absolute; /* Whether the traversal has absolute paths */ const char *base_grp_name; /* Name of the group that serves as the base * for iteration */ + unsigned fields; /* Fields needed in H5O_info_t struct */ } trav_ud_traverse_t; typedef struct { @@ -201,7 +202,7 @@ traverse_cb(hid_t loc_id, const char *path, const H5L_info_t *linfo, H5O_info_t oinfo; /* Get information about the object */ - if(H5Oget_info_by_name(loc_id, path, &oinfo, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name2(loc_id, path, &oinfo, udata->fields, H5P_DEFAULT) < 0) { if(new_name) HDfree(new_name); return(H5_ITER_ERROR); @@ -251,13 +252,13 @@ traverse_cb(hid_t loc_id, const char *path, const H5L_info_t *linfo, */ static int traverse(hid_t file_id, const char *grp_name, hbool_t visit_start, - hbool_t recurse, const trav_visitor_t *visitor) + hbool_t recurse, const trav_visitor_t *visitor, unsigned fields) { H5O_info_t oinfo; /* Object info for starting group */ int ret_value = SUCCEED; /* Get info for starting object */ - if(H5Oget_info_by_name(file_id, grp_name, &oinfo, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name2(file_id, grp_name, &oinfo, fields, H5P_DEFAULT) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info_by_name failed"); /* Visit the starting object */ @@ -282,6 +283,7 @@ traverse(hid_t file_id, const char *grp_name, hbool_t visit_start, udata.visitor = visitor; udata.is_absolute = (*grp_name == '/'); udata.base_grp_name = grp_name; + udata.fields = fields; /* Check for iteration of links vs. visiting all links recursively */ if(recurse) { @@ -356,9 +358,9 @@ trav_fileinfo_add(trav_info_t *info, hid_t loc_id) size_t idx = info->nused - 1; if ( info->paths[idx].path && HDstrcmp(info->paths[idx].path, ".")) - H5Oget_info_by_name(loc_id, info->paths[idx].path, &oinfo, H5P_DEFAULT); + H5Oget_info_by_name2(loc_id, info->paths[idx].path, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); else - H5Oget_info(loc_id, &oinfo); + H5Oget_info2(loc_id, &oinfo, H5O_INFO_BASIC); info->paths[idx].objno = oinfo.addr; info->paths[idx].fileno = oinfo.fileno; @@ -436,7 +438,7 @@ h5trav_getinfo(hid_t file_id, trav_info_t *info) info_visitor.udata = info; /* Traverse all objects in the file, visiting each object & link */ - if(traverse(file_id, "/", TRUE, TRUE, &info_visitor) < 0) + if(traverse(file_id, "/", TRUE, TRUE, &info_visitor, H5O_INFO_BASIC) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); done: @@ -602,7 +604,7 @@ h5trav_gettable(hid_t fid, trav_table_t *table) table_visitor.udata = table; /* Traverse all objects in the file, visiting each object & link */ - if(traverse(fid, "/", TRUE, TRUE, &table_visitor) < 0) + if(traverse(fid, "/", TRUE, TRUE, &table_visitor, H5O_INFO_BASIC) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); done: @@ -1027,7 +1029,7 @@ h5trav_print(hid_t fid) print_visitor.udata = &print_udata; /* Traverse all objects in the file, visiting each object & link */ - if(traverse(fid, "/", TRUE, TRUE, &print_visitor) < 0) + if(traverse(fid, "/", TRUE, TRUE, &print_visitor, H5O_INFO_BASIC) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); done: @@ -1047,7 +1049,7 @@ done: int h5trav_visit(hid_t fid, const char *grp_name, hbool_t visit_start, hbool_t recurse, h5trav_obj_func_t visit_obj, h5trav_lnk_func_t visit_lnk, - void *udata) + void *udata, unsigned fields) { trav_visitor_t visitor; /* Visitor structure for objects */ int ret_value = SUCCEED; @@ -1058,7 +1060,7 @@ h5trav_visit(hid_t fid, const char *grp_name, hbool_t visit_start, visitor.udata = udata; /* Traverse all objects in the file, visiting each object & link */ - if(traverse(fid, grp_name, visit_start, recurse, &visitor) < 0) + if(traverse(fid, grp_name, visit_start, recurse, &visitor, fields) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "traverse failed"); done: diff --git a/tools/lib/h5trav.h b/tools/lib/h5trav.h index c2ad9b7..a1d33b7 100644 --- a/tools/lib/h5trav.h +++ b/tools/lib/h5trav.h @@ -134,7 +134,7 @@ extern "C" { H5TOOLS_DLL void h5trav_set_index(H5_index_t print_index_by, H5_iter_order_t print_index_order); H5TOOLS_DLL int h5trav_visit(hid_t file_id, const char *grp_name, hbool_t visit_start, hbool_t recurse, h5trav_obj_func_t visit_obj, - h5trav_lnk_func_t visit_lnk, void *udata); + h5trav_lnk_func_t visit_lnk, void *udata, unsigned fields); H5TOOLS_DLL herr_t symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path); H5TOOLS_DLL hbool_t symlink_is_visited(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path); diff --git a/tools/src/h5copy/CMakeLists.txt b/tools/src/h5copy/CMakeLists.txt index 500484e..10b3f3d 100644 --- a/tools/src/h5copy/CMakeLists.txt +++ b/tools/src/h5copy/CMakeLists.txt @@ -5,7 +5,7 @@ project (HDF5_TOOLS_SRC_H5COPY C) # Add the h5copy and test executables # -------------------------------------------------------------------- add_executable (h5copy ${HDF5_TOOLS_SRC_H5COPY_SOURCE_DIR}/h5copy.c) -target_include_directories(h5copy PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5copy PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5copy STATIC) target_link_libraries (h5copy PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5copy PROPERTIES FOLDER tools) @@ -15,7 +15,7 @@ set (H5_DEP_EXECUTABLES h5copy) if (BUILD_SHARED_LIBS) add_executable (h5copy-shared ${HDF5_TOOLS_SRC_H5COPY_SOURCE_DIR}/h5copy.c) - target_include_directories(h5copy-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5copy-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5copy-shared SHARED) target_link_libraries (h5copy-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5copy-shared PROPERTIES FOLDER tools) diff --git a/tools/src/h5diff/CMakeLists.txt b/tools/src/h5diff/CMakeLists.txt index 3d9b3e0..b990e3a 100644 --- a/tools/src/h5diff/CMakeLists.txt +++ b/tools/src/h5diff/CMakeLists.txt @@ -8,7 +8,7 @@ add_executable (h5diff ${HDF5_TOOLS_SRC_H5DIFF_SOURCE_DIR}/h5diff_common.c ${HDF5_TOOLS_SRC_H5DIFF_SOURCE_DIR}/h5diff_main.c ) -target_include_directories(h5diff PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5diff PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5diff STATIC) target_link_libraries (h5diff PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5diff PROPERTIES FOLDER tools) @@ -21,7 +21,7 @@ if (BUILD_SHARED_LIBS) ${HDF5_TOOLS_SRC_H5DIFF_SOURCE_DIR}/h5diff_common.c ${HDF5_TOOLS_SRC_H5DIFF_SOURCE_DIR}/h5diff_main.c ) - target_include_directories(h5diff-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5diff-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5diff-shared SHARED) target_link_libraries (h5diff-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5diff-shared PROPERTIES FOLDER tools) diff --git a/tools/src/h5dump/CMakeLists.txt b/tools/src/h5dump/CMakeLists.txt index 1d15759..25166c7 100644 --- a/tools/src/h5dump/CMakeLists.txt +++ b/tools/src/h5dump/CMakeLists.txt @@ -9,7 +9,7 @@ add_executable (h5dump ${HDF5_TOOLS_SRC_H5DUMP_SOURCE_DIR}/h5dump_ddl.c ${HDF5_TOOLS_SRC_H5DUMP_SOURCE_DIR}/h5dump_xml.c ) -target_include_directories(h5dump PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5dump PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5dump STATIC) target_link_libraries (h5dump PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5dump PROPERTIES FOLDER tools) @@ -23,7 +23,7 @@ if (BUILD_SHARED_LIBS) ${HDF5_TOOLS_SRC_H5DUMP_SOURCE_DIR}/h5dump_ddl.c ${HDF5_TOOLS_SRC_H5DUMP_SOURCE_DIR}/h5dump_xml.c ) - target_include_directories(h5dump-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5dump-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5dump-shared SHARED) target_link_libraries (h5dump-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5dump-shared PROPERTIES FOLDER tools) diff --git a/tools/src/h5dump/h5dump.c b/tools/src/h5dump/h5dump.c index 25e4858..a5f0369 100644 --- a/tools/src/h5dump/h5dump.c +++ b/tools/src/h5dump/h5dump.c @@ -1482,7 +1482,7 @@ main(int argc, const char *argv[]) } /* Get object info for root group */ - if(H5Oget_info_by_name(fid, "/", &oi, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name2(fid, "/", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__); h5tools_setstatus(EXIT_FAILURE); goto done; diff --git a/tools/src/h5dump/h5dump_ddl.c b/tools/src/h5dump/h5dump_ddl.c index 6646626..5c47abd 100644 --- a/tools/src/h5dump/h5dump_ddl.c +++ b/tools/src/h5dump/h5dump_ddl.c @@ -229,7 +229,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR H5O_info_t oinfo; /* Stat the object */ - if(H5Oget_info_by_name(group, name, &oinfo, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name2(group, name, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { error_msg("unable to get object information for \"%s\"\n", name); h5tools_setstatus(EXIT_FAILURE); ret = FAIL; @@ -706,7 +706,7 @@ dump_named_datatype(hid_t tid, const char *name) h5tools_dump_header_format->datatypeblockbegin); h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); - H5Oget_info(tid, &oinfo); + H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC); /* Must check for uniqueness of all objects if we've traversed an elink, * otherwise only check if the reference count > 1. @@ -876,7 +876,7 @@ dump_group(hid_t gid, const char *name) h5tools_dump_comment(rawoutstream, outputformat, &ctx, gid); - H5Oget_info(gid, &oinfo); + H5Oget_info2(gid, &oinfo, H5O_INFO_BASIC); /* Must check for uniqueness of all objects if we've traversed an elink, * otherwise only check if the reference count > 1. @@ -1512,7 +1512,7 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H handle_udata.fid = fid; handle_udata.op_name = path_name; - if(h5trav_visit(fid, "/", TRUE, TRUE, obj_search, lnk_search, &handle_udata) < 0) { + if(h5trav_visit(fid, "/", TRUE, TRUE, obj_search, lnk_search, &handle_udata, H5O_INFO_BASIC) < 0) { error_msg("error traversing information\n"); h5tools_setstatus(EXIT_FAILURE); } @@ -1800,7 +1800,7 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis } /* end if */ - H5Oget_info(dsetid, &oinfo); + H5Oget_info2(dsetid, &oinfo, H5O_INFO_BASIC); if(oinfo.rc > 1 || hit_elink) { obj_t *found_obj; /* Found object */ @@ -2101,7 +2101,7 @@ dump_extlink(hid_t group, const char *linkname, const char *objname) goto fail; /* Get object info */ - if (H5Oget_info(oid, &oi) < 0) { + if (H5Oget_info2(oid, &oi, H5O_INFO_BASIC) < 0) { H5Oclose(oid); goto fail; } diff --git a/tools/src/h5dump/h5dump_xml.c b/tools/src/h5dump/h5dump_xml.c index 4e13df3..e399d8f 100644 --- a/tools/src/h5dump/h5dump_xml.c +++ b/tools/src/h5dump/h5dump_xml.c @@ -180,7 +180,7 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ H5O_info_t oinfo; /* Stat the object */ - if(H5Oget_info_by_name(group, name, &oinfo, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name2(group, name, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { error_msg("unable to get object information for \"%s\"\n", name); h5tools_setstatus(EXIT_FAILURE); ret = FAIL; @@ -881,7 +881,7 @@ xml_print_datatype(hid_t type, unsigned in_group) obj_t *found_obj; /* Found object */ /* detect a shared datatype, output only once */ - H5Oget_info(type, &oinfo); + H5Oget_info2(type, &oinfo, H5O_INFO_BASIC); found_obj = search_obj(type_table, oinfo.addr); if(found_obj) { @@ -1534,7 +1534,7 @@ xml_dump_datatype(hid_t type) obj_t *found_obj; /* Found object */ /* Datatype is a shared or named datatype */ - H5Oget_info(type, &oinfo); + H5Oget_info2(type, &oinfo, H5O_INFO_BASIC); found_obj = search_obj(type_table, oinfo.addr); if(found_obj) { @@ -2362,7 +2362,7 @@ xml_dump_named_datatype(hid_t type, const char *name) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); /* Check uniqueness of named datatype */ - H5Oget_info(type, &oinfo); + H5Oget_info2(type, &oinfo, H5O_INFO_BASIC); if(oinfo.rc > 1) { obj_t *found_obj; /* Found object */ @@ -2548,7 +2548,7 @@ xml_dump_group(hid_t gid, const char *name) } } - H5Oget_info(gid, &oinfo); + H5Oget_info2(gid, &oinfo, H5O_INFO_BASIC); if(oinfo.rc > 1) { obj_t *found_obj; /* Found object */ diff --git a/tools/src/h5format_convert/CMakeLists.txt b/tools/src/h5format_convert/CMakeLists.txt index 914d05b..62f269b 100644 --- a/tools/src/h5format_convert/CMakeLists.txt +++ b/tools/src/h5format_convert/CMakeLists.txt @@ -5,7 +5,7 @@ project (HDF5_TOOLS_SRC_H5FC C) # Add the h5format_convert executables # -------------------------------------------------------------------- add_executable (h5format_convert ${HDF5_TOOLS_SRC_H5FC_SOURCE_DIR}/h5format_convert.c) -target_include_directories(h5format_convert PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5format_convert PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5format_convert STATIC) target_link_libraries (h5format_convert PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5format_convert PROPERTIES FOLDER tools) diff --git a/tools/src/h5format_convert/h5format_convert.c b/tools/src/h5format_convert/h5format_convert.c index 2bfe280..0fc0289 100644 --- a/tools/src/h5format_convert/h5format_convert.c +++ b/tools/src/h5format_convert/h5format_convert.c @@ -430,7 +430,7 @@ main(int argc, const char *argv[]) } else { /* Convert all datasets in the file */ if(verbose_g) HDfprintf(stdout, "Processing all datasets in the file...\n"); - if(h5trav_visit(fid, "/", TRUE, TRUE, convert_dsets_cb, NULL, &fid) < 0) + if(h5trav_visit(fid, "/", TRUE, TRUE, convert_dsets_cb, NULL, &fid, H5O_INFO_BASIC) < 0) goto done; } /* end else */ diff --git a/tools/src/h5import/CMakeLists.txt b/tools/src/h5import/CMakeLists.txt index 7874e33..7b38420 100644 --- a/tools/src/h5import/CMakeLists.txt +++ b/tools/src/h5import/CMakeLists.txt @@ -5,7 +5,7 @@ project (HDF5_TOOLS_SRC_H5IMPORT C) # Add the h5import executables # -------------------------------------------------------------------- add_executable (h5import ${HDF5_TOOLS_SRC_H5IMPORT_SOURCE_DIR}/h5import.c) -target_include_directories(h5import PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5import PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5import STATIC) target_link_libraries (h5import PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) #set_target_properties (h5import PROPERTIES COMPILE_DEFINITIONS H5DEBUGIMPORT) diff --git a/tools/src/h5jam/CMakeLists.txt b/tools/src/h5jam/CMakeLists.txt index 87062b6..c455b2f 100644 --- a/tools/src/h5jam/CMakeLists.txt +++ b/tools/src/h5jam/CMakeLists.txt @@ -5,14 +5,14 @@ project (HDF5_TOOLS_SRC_H5JAM C) # Add the h5jam executables # -------------------------------------------------------------------- add_executable (h5jam ${HDF5_TOOLS_SRC_H5JAM_SOURCE_DIR}/h5jam.c) -target_include_directories(h5jam PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5jam PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5jam STATIC) target_link_libraries (h5jam PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5jam PROPERTIES FOLDER tools) set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5jam") add_executable (h5unjam ${HDF5_TOOLS_SRC_H5JAM_SOURCE_DIR}/h5unjam.c) -target_include_directories(h5unjam PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5unjam PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5unjam STATIC) target_link_libraries (h5unjam PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5unjam PROPERTIES FOLDER tools) diff --git a/tools/src/h5ls/CMakeLists.txt b/tools/src/h5ls/CMakeLists.txt index d72b43e..5b31b84 100644 --- a/tools/src/h5ls/CMakeLists.txt +++ b/tools/src/h5ls/CMakeLists.txt @@ -5,7 +5,7 @@ project (HDF5_TOOLS_SRC_H5LS C) # Add the h5ls executable #----------------------------------------------------------------------------- add_executable (h5ls ${HDF5_TOOLS_SRC_H5LS_SOURCE_DIR}/h5ls.c) -target_include_directories(h5ls PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5ls PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5ls STATIC) target_link_libraries (h5ls PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5ls PROPERTIES FOLDER tools) @@ -15,7 +15,7 @@ set (H5_DEP_EXECUTABLES h5ls) if (BUILD_SHARED_LIBS) add_executable (h5ls-shared ${HDF5_TOOLS_SRC_H5LS_SOURCE_DIR}/h5ls.c) - target_include_directories(h5ls-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5ls-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5ls-shared SHARED) target_link_libraries (h5ls-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5ls-shared PROPERTIES FOLDER tools) diff --git a/tools/src/h5ls/h5ls.c b/tools/src/h5ls/h5ls.c index a07d308..4bc1526 100644 --- a/tools/src/h5ls/h5ls.c +++ b/tools/src/h5ls/h5ls.c @@ -1320,7 +1320,7 @@ print_type(h5tools_str_t *buffer, hid_t type, int ind) if(H5Tcommitted(type)) { H5O_info_t oi; - if(H5Oget_info(type, &oi) >= 0) + if(H5Oget_info2(type, &oi, H5O_INFO_BASIC) >= 0) h5tools_str_append(buffer,"shared-%lu:"H5_PRINTF_HADDR_FMT" ", oi.fileno, oi.addr); else @@ -2386,7 +2386,7 @@ visit_obj(hid_t file, const char *oname, iter_t *iter) h5tools_str_reset(&buffer); /* Retrieve info for object to list */ - if(H5Oget_info_by_name(file, oname, &oi, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name2(file, oname, &oi, H5O_INFO_BASIC|H5O_INFO_TIME, H5P_DEFAULT) < 0) { if(iter->symlink_target) { h5tools_str_append(&buffer, "{**NOT FOUND**}\n"); iter->symlink_target = FALSE; @@ -2414,7 +2414,7 @@ visit_obj(hid_t file, const char *oname, iter_t *iter) iter->name_start = iter->base_len; /* Specified name is a group. List the complete contents of the group. */ - h5trav_visit(file, oname, (hbool_t) (display_root_g || iter->symlink_target), recursive_g, list_obj, list_lnk, iter); + h5trav_visit(file, oname, (hbool_t) (display_root_g || iter->symlink_target), recursive_g, list_obj, list_lnk, iter, H5O_INFO_BASIC|H5O_INFO_TIME); /* Close group */ if(!iter->symlink_target) diff --git a/tools/src/h5repack/CMakeLists.txt b/tools/src/h5repack/CMakeLists.txt index e4faa37..c0cd558 100644 --- a/tools/src/h5repack/CMakeLists.txt +++ b/tools/src/h5repack/CMakeLists.txt @@ -15,7 +15,7 @@ set (REPACK_COMMON_SOURCES ) add_executable (h5repack ${REPACK_COMMON_SOURCES} ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_main.c) -target_include_directories(h5repack PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5repack PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5repack STATIC) target_link_libraries (h5repack PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5repack PROPERTIES FOLDER tools) @@ -25,7 +25,7 @@ set (H5_DEP_EXECUTABLES h5repack) if (BUILD_SHARED_LIBS) add_executable (h5repack-shared ${REPACK_COMMON_SOURCES} ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_main.c) - target_include_directories(h5repack-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5repack-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5repack-shared SHARED) target_link_libraries (h5repack-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5repack-shared PROPERTIES FOLDER tools) diff --git a/tools/src/h5repack/h5repack.c b/tools/src/h5repack/h5repack.c index e7f4aae..a63e56f 100644 --- a/tools/src/h5repack/h5repack.c +++ b/tools/src/h5repack/h5repack.c @@ -222,7 +222,7 @@ hid_t copy_named_datatype(hid_t type_in, hid_t fidout, H5O_info_t oinfo; /* Object info of input dtype */ hid_t ret_value = -1; /* The identifier of the named dtype in the out file */ - if (H5Oget_info(type_in, &oinfo) < 0) + if (H5Oget_info2(type_in, &oinfo, H5O_INFO_BASIC) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info failed"); if (*named_dt_head_p) { @@ -352,7 +352,7 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, hbool_t is_ref = 0; H5T_class_t type_class = -1; - if (H5Oget_info(loc_in, &oinfo) < 0) + if (H5Oget_info2(loc_in, &oinfo, H5O_INFO_NUM_ATTRS) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info failed"); /*------------------------------------------------------------------------- diff --git a/tools/src/h5repack/h5repack_refs.c b/tools/src/h5repack/h5repack_refs.c index 7b610a3..a275443 100644 --- a/tools/src/h5repack/h5repack_refs.c +++ b/tools/src/h5repack/h5repack_refs.c @@ -456,7 +456,7 @@ static int copy_refs_attr(hid_t loc_in, int ref_comp_field_n = 0; - if(H5Oget_info(loc_in, &oinfo) < 0) + if(H5Oget_info2(loc_in, &oinfo, H5O_INFO_NUM_ATTRS) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Oget_info failed"); for(u = 0; u < (unsigned)oinfo.num_attrs; u++) { @@ -807,7 +807,7 @@ MapIdToName(hid_t refobj_id, trav_table_t *travt) H5O_info_t ref_oinfo; /* Stat for the refobj id */ /* obtain information to identify the referenced object uniquely */ - if(H5Oget_info(refobj_id, &ref_oinfo) < 0) + if(H5Oget_info2(refobj_id, &ref_oinfo, H5O_INFO_BASIC) < 0) goto out; if(ref_oinfo.addr == travt->objs[u].objno) { diff --git a/tools/src/h5stat/CMakeLists.txt b/tools/src/h5stat/CMakeLists.txt index 810d916..56c172c 100644 --- a/tools/src/h5stat/CMakeLists.txt +++ b/tools/src/h5stat/CMakeLists.txt @@ -5,7 +5,7 @@ project (HDF5_TOOLS_SRC_H5STAT C) # Add the h5stat executables # -------------------------------------------------------------------- add_executable (h5stat ${HDF5_TOOLS_SRC_H5STAT_SOURCE_DIR}/h5stat.c) -target_include_directories(h5stat PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5stat PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5stat STATIC) target_link_libraries (h5stat PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5stat PROPERTIES FOLDER tools) @@ -15,7 +15,7 @@ set (H5_DEP_EXECUTABLES h5stat) if (BUILD_SHARED_LIBS) add_executable (h5stat-shared ${HDF5_TOOLS_SRC_H5STAT_SOURCE_DIR}/h5stat.c) - target_include_directories(h5stat-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5stat-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5stat-shared SHARED) target_link_libraries (h5stat-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5stat-shared PROPERTIES FOLDER tools) diff --git a/tools/src/h5stat/h5stat.c b/tools/src/h5stat/h5stat.c index 6f196b4..da713ac 100644 --- a/tools/src/h5stat/h5stat.c +++ b/tools/src/h5stat/h5stat.c @@ -1788,14 +1788,14 @@ main(int argc, const char *argv[]) unsigned u; for(u = 0; u < hand->obj_count; u++) { - if(h5trav_visit(fid, hand->obj[u], TRUE, TRUE, obj_stats, lnk_stats, &iter) < 0) + if(h5trav_visit(fid, hand->obj[u], TRUE, TRUE, obj_stats, lnk_stats, &iter, H5O_INFO_ALL) < 0) warn_msg("Unable to traverse object \"%s\"\n", hand->obj[u]); else print_statistics(hand->obj[u], &iter); } /* end for */ } /* end if */ else { - if(h5trav_visit(fid, "/", TRUE, TRUE, obj_stats, lnk_stats, &iter) < 0) + if(h5trav_visit(fid, "/", TRUE, TRUE, obj_stats, lnk_stats, &iter, H5O_INFO_ALL) < 0) warn_msg("Unable to traverse objects/links in file \"%s\"\n", fname); else print_statistics("/", &iter); diff --git a/tools/src/misc/CMakeLists.txt b/tools/src/misc/CMakeLists.txt index 45b38c1..937799f 100644 --- a/tools/src/misc/CMakeLists.txt +++ b/tools/src/misc/CMakeLists.txt @@ -6,28 +6,28 @@ project (HDF5_TOOLS_SRC_MISC C) # -------------------------------------------------------------------- #-- Misc Executables add_executable (h5debug ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5debug.c) -target_include_directories(h5debug PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5debug PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5debug STATIC) target_link_libraries (h5debug PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5debug PROPERTIES FOLDER tools) set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5debug") add_executable (h5repart ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5repart.c) -target_include_directories(h5repart PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5repart PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5repart STATIC) target_link_libraries (h5repart PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5repart PROPERTIES FOLDER tools) set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5repart") add_executable (h5mkgrp ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5mkgrp.c) -target_include_directories(h5mkgrp PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5mkgrp PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5mkgrp STATIC) target_link_libraries (h5mkgrp PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5mkgrp PROPERTIES FOLDER tools) set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5mkgrp") add_executable (h5clear ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5clear.c) -target_include_directories(h5clear PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5clear PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5clear STATIC) target_link_libraries (h5clear PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5clear PROPERTIES FOLDER tools) diff --git a/tools/test/h5copy/CMakeLists.txt b/tools/test/h5copy/CMakeLists.txt index 487d9dc..a71a12a 100644 --- a/tools/test/h5copy/CMakeLists.txt +++ b/tools/test/h5copy/CMakeLists.txt @@ -6,7 +6,7 @@ project (HDF5_TOOLS_TEST_H5COPY C) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5copygentest ${HDF5_TOOLS_TEST_H5COPY_SOURCE_DIR}/h5copygentest.c) - target_include_directories(h5copygentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5copygentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5copygentest STATIC) target_link_libraries (h5copygentest PRIVATE ${HDF5_LIB_TARGET}) set_target_properties (h5copygentest PROPERTIES FOLDER generator/tools) @@ -23,7 +23,7 @@ if (BUILD_SHARED_LIBS) set (HDF5_TOOL_PLUGIN_LIB_TARGET ${HDF5_TOOL_PLUGIN_LIB_CORENAME}) add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_copy.c) - target_include_directories(${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED) target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIB_TARGET}) H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") diff --git a/tools/test/h5diff/CMakeLists.txt b/tools/test/h5diff/CMakeLists.txt index 00be8fc..c0aac36 100644 --- a/tools/test/h5diff/CMakeLists.txt +++ b/tools/test/h5diff/CMakeLists.txt @@ -6,7 +6,7 @@ project (HDF5_TOOLS_TEST_H5DIFF C) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5diffgentest ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/h5diffgentest.c) - target_include_directories(h5diffgentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5diffgentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5diffgentest STATIC) target_link_libraries (h5diffgentest PRIVATE ${HDF5_LIB_TARGET}) set_target_properties (h5diffgentest PROPERTIES FOLDER generator/tools) @@ -23,7 +23,7 @@ if (BUILD_SHARED_LIBS) set (HDF5_TOOL_PLUGIN_LIB_TARGET ${HDF5_TOOL_PLUGIN_LIB_CORENAME}) add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_diff.c) - target_include_directories(${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED) target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIB_TARGET}) H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") diff --git a/tools/test/h5dump/CMakeLists.txt b/tools/test/h5dump/CMakeLists.txt index d1d5412..4c409e8 100644 --- a/tools/test/h5dump/CMakeLists.txt +++ b/tools/test/h5dump/CMakeLists.txt @@ -9,7 +9,7 @@ set (HDF5_TOOL_PLUGIN_LIB_NAME "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TO set (HDF5_TOOL_PLUGIN_LIB_TARGET ${HDF5_TOOL_PLUGIN_LIB_CORENAME}) add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_dump.c) -target_include_directories(${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED) target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIB_TARGET}) H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") @@ -33,7 +33,7 @@ add_custom_command ( # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5dumpgentest ${HDF5_TOOLS_TEST_H5DUMP_SOURCE_DIR}/h5dumpgentest.c) - target_include_directories(h5dumpgentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5dumpgentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5dumpgentest STATIC) target_link_libraries (h5dumpgentest PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5dumpgentest PROPERTIES FOLDER generator/tools) diff --git a/tools/test/h5format_convert/CMakeLists.txt b/tools/test/h5format_convert/CMakeLists.txt index 516b36b..170ba4c 100644 --- a/tools/test/h5format_convert/CMakeLists.txt +++ b/tools/test/h5format_convert/CMakeLists.txt @@ -5,14 +5,14 @@ project (HDF5_TOOLS_TEST_H5FC C) # Add the h5format_convert test executables # -------------------------------------------------------------------- add_executable (h5fc_chk_idx ${HDF5_TOOLS_TEST_H5FC_SOURCE_DIR}/h5fc_chk_idx.c) -target_include_directories(h5fc_chk_idx PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5fc_chk_idx PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5fc_chk_idx STATIC) target_link_libraries (h5fc_chk_idx PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5fc_chk_idx PROPERTIES FOLDER tools) if (HDF5_BUILD_GENERATORS) add_executable (h5fc_gentest ${HDF5_TOOLS_TEST_H5FC_SOURCE_DIR}/h5fc_gentest.c) - target_include_directories(h5fc_gentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5fc_gentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5fc_gentest STATIC) target_link_libraries (h5fc_gentest PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5fc_gentest PROPERTIES FOLDER generator/tools) diff --git a/tools/test/h5import/CMakeLists.txt b/tools/test/h5import/CMakeLists.txt index 33fa181..500be58 100644 --- a/tools/test/h5import/CMakeLists.txt +++ b/tools/test/h5import/CMakeLists.txt @@ -5,7 +5,7 @@ project (HDF5_TOOLS_TEST_H5IMPORT C) # Add the h5import executables # -------------------------------------------------------------------- add_executable (h5importtest ${HDF5_TOOLS_TEST_H5IMPORT_SOURCE_DIR}/h5importtest.c) -target_include_directories(h5importtest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5importtest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5importtest STATIC) target_link_libraries (h5importtest PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5importtest PROPERTIES FOLDER tools) diff --git a/tools/test/h5jam/CMakeLists.txt b/tools/test/h5jam/CMakeLists.txt index 38713ba..cc70adc 100644 --- a/tools/test/h5jam/CMakeLists.txt +++ b/tools/test/h5jam/CMakeLists.txt @@ -6,7 +6,7 @@ project (HDF5_TOOLS_TEST_H5JAM C) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5jamgentest ${HDF5_TOOLS_TEST_H5JAM_SOURCE_DIR}/h5jamgentest.c) - target_include_directories(h5jamgentest PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5jamgentest PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5jamgentest STATIC) target_link_libraries (h5jamgentest PRIVATE ${HDF5_LIB_TARGET}) set_target_properties (h5jamgentest PROPERTIES FOLDER generator/tools) @@ -15,13 +15,13 @@ if (HDF5_BUILD_GENERATORS) endif () add_executable (getub ${HDF5_TOOLS_TEST_H5JAM_SOURCE_DIR}/getub.c) -target_include_directories(getub PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(getub PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (getub STATIC) target_link_libraries (getub PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (getub PROPERTIES FOLDER tools) add_executable (tellub ${HDF5_TOOLS_TEST_H5JAM_SOURCE_DIR}/tellub.c) -target_include_directories(tellub PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(tellub PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (tellub STATIC) target_link_libraries (tellub PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (tellub PROPERTIES FOLDER tools) diff --git a/tools/test/h5ls/CMakeLists.txt b/tools/test/h5ls/CMakeLists.txt index d6f71eb..5b8cbe0 100644 --- a/tools/test/h5ls/CMakeLists.txt +++ b/tools/test/h5ls/CMakeLists.txt @@ -9,7 +9,7 @@ set (HDF5_TOOL_PLUGIN_LIB_NAME "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TO set (HDF5_TOOL_PLUGIN_LIB_TARGET ${HDF5_TOOL_PLUGIN_LIB_CORENAME}) add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_ls.c) -target_include_directories(${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED) target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIB_TARGET}) H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") diff --git a/tools/test/h5repack/CMakeLists.txt b/tools/test/h5repack/CMakeLists.txt index fa26e90..2a168e9 100644 --- a/tools/test/h5repack/CMakeLists.txt +++ b/tools/test/h5repack/CMakeLists.txt @@ -5,7 +5,9 @@ project (HDF5_TOOLS_TEST_H5REPACK C) # Add h5Repack test executables # -------------------------------------------------------------------- add_executable (testh5repack_detect_szip ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testh5repack_detect_szip.c) -target_include_directories(testh5repack_detect_szip PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(testh5repack_detect_szip + PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" +) TARGET_C_PROPERTIES (testh5repack_detect_szip STATIC) target_link_libraries (testh5repack_detect_szip PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (testh5repack_detect_szip PROPERTIES FOLDER tools) @@ -20,7 +22,9 @@ set (REPACK_COMMON_SOURCES ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack.c ) add_executable (h5repacktest ${REPACK_COMMON_SOURCES} ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/h5repacktst.c) -target_include_directories(h5repacktest PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5repacktest + PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" +) TARGET_C_PROPERTIES (h5repacktest STATIC) target_link_libraries (h5repacktest PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (h5repacktest PROPERTIES FOLDER tools) @@ -36,13 +40,13 @@ set (HDF5_TOOL_PLUGIN_LIB_VNAME "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TO set (HDF5_TOOL_PLUGIN_LIB_VTARGET ${HDF5_TOOL_PLUGIN_LIB_VCORENAME}) add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_rpk.c) -target_include_directories(${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED) target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIB_TARGET}) H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") add_library (${HDF5_TOOL_PLUGIN_LIB_VTARGET} SHARED dynlib_vrpk.c) -target_include_directories(${HDF5_TOOL_PLUGIN_LIB_VTARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(${HDF5_TOOL_PLUGIN_LIB_VTARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_VTARGET} SHARED) target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_VTARGET} PRIVATE ${HDF5_TEST_LIB_TARGET}) H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_VTARGET} ${HDF5_TOOL_PLUGIN_LIB_VNAME} SHARED "LIB") diff --git a/tools/test/h5stat/CMakeLists.txt b/tools/test/h5stat/CMakeLists.txt index 59e2fb3..e65c76f 100644 --- a/tools/test/h5stat/CMakeLists.txt +++ b/tools/test/h5stat/CMakeLists.txt @@ -6,7 +6,7 @@ project (HDF5_TOOLS_TEST_H5STAT C) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5stat_gentest ${HDF5_TOOLS_TEST_H5STAT_SOURCE_DIR}/h5stat_gentest.c) - target_include_directories(h5stat_gentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5stat_gentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5stat_gentest STATIC) target_link_libraries (h5stat_gentest PRIVATE ${HDF5_LIB_TARGET}) set_target_properties (h5stat_gentest PROPERTIES FOLDER generator/tools) diff --git a/tools/test/misc/CMakeLists.txt b/tools/test/misc/CMakeLists.txt index fbd9c29..556b5b2 100644 --- a/tools/test/misc/CMakeLists.txt +++ b/tools/test/misc/CMakeLists.txt @@ -6,14 +6,14 @@ project (HDF5_TOOLS_TEST_MISC C) # -------------------------------------------------------------------- if (HDF5_BUILD_GENERATORS) add_executable (h5repart_gentest ${HDF5_TOOLS_TEST_MISC_SOURCE_DIR}/h5repart_gentest.c) - target_include_directories(h5repart_gentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5repart_gentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5repart_gentest STATIC) target_link_libraries (h5repart_gentest PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5repart_gentest PROPERTIES FOLDER generator/tools) #add_test (NAME h5repart_gentest COMMAND $<TARGET_FILE:h5repart_gentest>) add_executable (h5clear_gentest ${HDF5_TOOLS_TEST_MISC_SOURCE_DIR}/h5clear_gentest.c) - target_include_directories(h5clear_gentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5clear_gentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5clear_gentest STATIC) target_link_libraries (h5clear_gentest PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5clear_gentest PROPERTIES FOLDER tools) @@ -24,13 +24,13 @@ if (HDF5_BUILD_GENERATORS) endif () add_executable (h5repart_test ${HDF5_TOOLS_TEST_MISC_SOURCE_DIR}/repart_test.c) -target_include_directories(h5repart_test PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5repart_test PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5repart_test STATIC) target_link_libraries (h5repart_test PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5repart_test PROPERTIES FOLDER tools) add_executable (clear_open_chk ${HDF5_TOOLS_TEST_MISC_SOURCE_DIR}/clear_open_chk.c) -target_include_directories(clear_open_chk PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(clear_open_chk PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (clear_open_chk STATIC) target_link_libraries (clear_open_chk PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (clear_open_chk PROPERTIES FOLDER tools) diff --git a/tools/test/misc/vds/CMakeLists.txt b/tools/test/misc/vds/CMakeLists.txt index dc7df20..98bce4d 100644 --- a/tools/test/misc/vds/CMakeLists.txt +++ b/tools/test/misc/vds/CMakeLists.txt @@ -3,7 +3,7 @@ project (HDF5_TOOLS_TEST_MISC_VDS C) MACRO (ADD_H5_GENERATOR genfile) add_executable (${genfile} ${HDF5_TOOLS_TEST_MISC_VDS_SOURCE_DIR}/${genfile}.c) - target_include_directories(${genfile} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(${genfile} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${genfile} STATIC) target_link_libraries (${genfile} PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (${genfile} PROPERTIES FOLDER generator/tools) diff --git a/tools/test/perform/CMakeLists.txt b/tools/test/perform/CMakeLists.txt index 7b80c99..fa41608 100644 --- a/tools/test/perform/CMakeLists.txt +++ b/tools/test/perform/CMakeLists.txt @@ -10,7 +10,7 @@ set (h5perf_serial_SOURCES ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/sio_engine.c ) add_executable (h5perf_serial ${h5perf_serial_SOURCES}) -target_include_directories(h5perf_serial PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(h5perf_serial PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5perf_serial STATIC) target_link_libraries (h5perf_serial PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5perf_serial PROPERTIES FOLDER perform) @@ -22,7 +22,7 @@ if (HDF5_BUILD_PERFORM_STANDALONE) ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/sio_engine.c ) add_executable (h5perf_serial_alone ${h5perf_serial_alone_SOURCES}) - target_include_directories(h5perf_serial_alone PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5perf_serial_alone PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5perf_serial_alone STATIC) target_link_libraries (h5perf_serial_alone PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (h5perf_serial_alone PROPERTIES FOLDER perform) @@ -36,7 +36,7 @@ set (chunk_SOURCES ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/chunk.c ) add_executable(chunk ${chunk_SOURCES}) -target_include_directories(chunk PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(chunk PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (chunk STATIC) target_link_libraries(chunk PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (chunk PROPERTIES FOLDER perform) @@ -46,7 +46,7 @@ set (iopipe_SOURCES ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/iopipe.c ) add_executable (iopipe ${iopipe_SOURCES}) -target_include_directories(iopipe PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(iopipe PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (iopipe STATIC) target_link_libraries (iopipe PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (iopipe PROPERTIES FOLDER perform) @@ -56,7 +56,7 @@ set (overhead_SOURCES ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/overhead.c ) add_executable (overhead ${overhead_SOURCES}) -target_include_directories(overhead PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(overhead PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (overhead STATIC) target_link_libraries (overhead PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) set_target_properties (overhead PROPERTIES FOLDER perform) @@ -66,7 +66,7 @@ set (perf_meta_SOURCES ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/perf_meta.c ) add_executable (perf_meta ${perf_meta_SOURCES}) -target_include_directories(perf_meta PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(perf_meta PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (perf_meta STATIC) target_link_libraries (perf_meta PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (perf_meta PROPERTIES FOLDER perform) @@ -76,7 +76,7 @@ set (zip_perf_SOURCES ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/zip_perf.c ) add_executable (zip_perf ${zip_perf_SOURCES}) -target_include_directories(zip_perf PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") +target_include_directories(zip_perf PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (zip_perf STATIC) target_link_libraries (zip_perf PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (zip_perf PROPERTIES FOLDER perform) @@ -88,7 +88,7 @@ if (H5_HAVE_PARALLEL AND BUILD_TESTING) ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/pio_engine.c ) add_executable (h5perf ${h5perf_SOURCES}) - target_include_directories(h5perf PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5perf PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5perf STATIC) target_link_libraries (h5perf PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (h5perf PROPERTIES FOLDER perform) @@ -100,7 +100,7 @@ if (H5_HAVE_PARALLEL AND BUILD_TESTING) ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/pio_engine.c ) add_executable (h5perf_alone ${h5perf_alone_SOURCES}) - target_include_directories(h5perf_alone PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}") + target_include_directories(h5perf_alone PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (h5perf_alone STATIC) target_link_libraries (h5perf_alone PRIVATE ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) set_target_properties (h5perf_alone PROPERTIES FOLDER perform) diff --git a/hl/test/dectris_hl_perf.c b/tools/test/perform/direct_write_perf.c index 13cfac8..f13cd24 100644 --- a/hl/test/dectris_hl_perf.c +++ b/tools/test/perform/direct_write_perf.c @@ -12,11 +12,11 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * This test is for the DECTRIS project to the H5DOwrite_chunk function + * This tests the performance of the H5Dwrite_chunk() function. * */ -#include "hdf5_hl.h" +#include "hdf5.h" #ifdef H5_HAVE_FILTER_DEFLATE #include <zlib.h> @@ -51,7 +51,7 @@ #endif const char *FILENAME[] = { - "dectris_perf", + "direct_write", "unix.raw", NULL }; @@ -285,7 +285,7 @@ test_direct_write_uncompressed_data(hid_t fapl_id) struct timeval timeval_start; - TESTING("H5DOwrite_chunk for uncompressed data"); + TESTING("H5Dwrite_chunk for uncompressed data"); if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) TEST_ERROR; @@ -304,7 +304,7 @@ test_direct_write_uncompressed_data(hid_t fapl_id) /* Write the compressed chunk data repeatedly to cover all the chunks in the * dataset, using the direct writing function. */ for(i=0; i<NX; i++) { - status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, CHUNK_NY*CHUNK_NZ*sizeof(unsigned int), direct_buf[i]); + status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, CHUNK_NY*CHUNK_NZ*sizeof(unsigned int), direct_buf[i]); (offset[0])++; } @@ -369,7 +369,7 @@ test_direct_write_compressed_data(hid_t fapl_id) /* Write the compressed chunk data repeatedly to cover all the chunks in the * dataset, using the direct writing function. */ for(i=0; i<NX; i++) { - status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, data_size[i], outbuf[i]); + status = H5Dwrite_chunk(dataset, dxpl, filter_mask, offset, data_size[i], outbuf[i]); (offset[0])++; } @@ -637,12 +637,6 @@ main (void) hid_t fapl = H5P_DEFAULT; int i; - /* Testing setup */ -/* h5_reset(); - fapl = h5_fileaccess(); - - h5_fixname(FILENAME[0], fapl, filename, sizeof filename);*/ - sprintf(filename, "%s.h5", FILENAME[0]); create_file(fapl); @@ -657,7 +651,6 @@ main (void) free(direct_buf[i]); } -/* h5_cleanup(FILENAME, fapl);*/ return 0; } |