diff options
| -rw-r--r-- | fortran/src/H5Dff.F90 | 3 | ||||
| -rw-r--r-- | fortran/src/H5_f.c | 15 | ||||
| -rw-r--r-- | fortran/src/H5_ff.F90 | 11 | ||||
| -rw-r--r-- | fortran/src/H5f90global.F90 | 12 | ||||
| -rw-r--r-- | fortran/src/H5f90proto.h | 9 | ||||
| -rw-r--r-- | fortran/test/fortranlib_test.f90 | 2 | ||||
| -rw-r--r-- | fortran/test/tH5D.f90 | 120 |
7 files changed, 155 insertions, 17 deletions
diff --git a/fortran/src/H5Dff.F90 b/fortran/src/H5Dff.F90 index afdb5ba..e44d90e 100644 --- a/fortran/src/H5Dff.F90 +++ b/fortran/src/H5Dff.F90 @@ -1094,8 +1094,7 @@ CONTAINS offset = h5dget_offset(dset_id) - hdferr = 0 - IF(offset .LT. 0) hdferr = -1 + hdferr = 0 ! never returns a function error because C API never returns a function error. END SUBROUTINE h5dget_offset_f diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c index e527dce..f3bc42f 100644 --- a/fortran/src/H5_f.c +++ b/fortran/src/H5_f.c @@ -436,11 +436,12 @@ h5close_types_c( hid_t_f * types, int_f *lentypes, */ int_f h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags, - int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags, - int_f *h5fd_flags, hid_t_f *h5fd_hid_flags, - int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags, - hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags, - hsize_t_f *h5s_hsize_flags, int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags) + int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags, + int_f *h5fd_flags, hid_t_f *h5fd_hid_flags, + int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags, + hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags, + hsize_t_f *h5s_hsize_flags, int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags, + haddr_t_f *h5_haddr_generic_flags) /******/ { int ret_value = -1; @@ -773,7 +774,9 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags, h5_generic_flags[5] = (int_f)H5_ITER_INC; /* Increasing order */ h5_generic_flags[6] = (int_f)H5_ITER_DEC; /* Decreasing order */ h5_generic_flags[7] = (int_f)H5_ITER_NATIVE; /* No particular order, whatever is fastest */ - h5_generic_flags[8] = (int_f)H5_ITER_N; /* Number of iteration orders */ + h5_generic_flags[8] = (int_f)H5_ITER_N; /* Number of iteration orders */ + + h5_haddr_generic_flags[0] = (haddr_t_f)HADDR_UNDEF; /* undefined address */ ret_value = 0; return ret_value; diff --git a/fortran/src/H5_ff.F90 b/fortran/src/H5_ff.F90 index 4ceb1a8..169864f 100644 --- a/fortran/src/H5_ff.F90 +++ b/fortran/src/H5_ff.F90 @@ -105,16 +105,17 @@ CONTAINS i_H5S_hsize_flags, & i_H5T_flags, & i_H5Z_flags, & - i_H5generic_flags) & + i_H5generic_flags, & + i_H5generic_haddr_flags) & BIND(C,NAME='h5init_flags_c') - IMPORT :: HID_T, SIZE_T, HSIZE_T + IMPORT :: HID_T, SIZE_T, HSIZE_T, HADDR_T IMPORT :: H5D_FLAGS_LEN, H5D_SIZE_FLAGS_LEN, & H5E_FLAGS_LEN, H5E_HID_FLAGS_LEN, & H5F_FLAGS_LEN, H5G_FLAGS_LEN, H5FD_FLAGS_LEN, & H5FD_HID_FLAGS_LEN, H5I_FLAGS_LEN, H5L_FLAGS_LEN, & H5O_FLAGS_LEN, H5P_FLAGS_LEN, H5P_FLAGS_INT_LEN, & H5R_FLAGS_LEN, H5S_FLAGS_LEN, H5S_HSIZE_FLAGS_LEN, & - H5T_FLAGS_LEN, H5Z_FLAGS_LEN, H5generic_FLAGS_LEN + H5T_FLAGS_LEN, H5Z_FLAGS_LEN, H5generic_FLAGS_LEN, H5generic_haddr_FLAGS_LEN IMPLICIT NONE INTEGER i_H5D_flags(H5D_FLAGS_LEN) INTEGER(SIZE_T) i_H5D_size_flags(H5D_SIZE_FLAGS_LEN) @@ -135,6 +136,7 @@ CONTAINS INTEGER i_H5T_flags(H5T_FLAGS_LEN) INTEGER i_H5Z_flags(H5Z_FLAGS_LEN) INTEGER i_H5generic_flags(H5generic_FLAGS_LEN) + INTEGER(HADDR_T) i_H5generic_haddr_flags(H5generic_haddr_FLAGS_LEN) END FUNCTION h5init_flags_c END INTERFACE INTERFACE @@ -164,7 +166,8 @@ CONTAINS H5S_hsize_flags, & H5T_flags, & H5Z_flags, & - H5generic_flags) + H5generic_flags,& + H5generic_haddr_flags) error_3 = h5init1_flags_c(H5LIB_flags ) error = error_1 + error_2 + error_3 END SUBROUTINE h5open_f diff --git a/fortran/src/H5f90global.F90 b/fortran/src/H5f90global.F90 index c88327c..947eff4 100644 --- a/fortran/src/H5f90global.F90 +++ b/fortran/src/H5f90global.F90 @@ -316,6 +316,18 @@ MODULE H5GLOBAL EQUIVALENCE(H5generic_flags(7), H5_ITER_DEC_F) EQUIVALENCE(H5generic_flags(8), H5_ITER_NATIVE_F) EQUIVALENCE(H5generic_flags(9), H5_ITER_N_F) + + INTEGER, PARAMETER :: H5generic_haddr_FLAGS_LEN = 1 + INTEGER(HADDR_T) :: H5generic_haddr_flags(H5generic_haddr_FLAGS_LEN) + !DEC$if defined(BUILD_HDF5_DLL) + !DEC$ATTRIBUTES DLLEXPORT :: /H5generic_haddr_FLAGS/ + !DEC$endif + COMMON /H5generic_haddr_FLAGS/ H5generic_haddr_flags + + INTEGER(HADDR_T) :: HADDR_UNDEF_F + + EQUIVALENCE(H5generic_haddr_flags(1), HADDR_UNDEF_F) + ! ! H5G flags declaration ! diff --git a/fortran/src/H5f90proto.h b/fortran/src/H5f90proto.h index a07db22..1d08d7e 100644 --- a/fortran/src/H5f90proto.h +++ b/fortran/src/H5f90proto.h @@ -524,10 +524,11 @@ H5_FCDLL int_f h5close_c(void); H5_FCDLL int_f h5init_types_c(hid_t_f *types, hid_t_f *floatingtypes, hid_t_f *integertypes); H5_FCDLL int_f h5close_types_c(hid_t_f *types, int_f *lentypes, hid_t_f *floatingtypes, int_f *floatinglen, hid_t_f *integertypes, int_f *integerlen); H5_FCDLL int_f h5init_flags_c(int_f *h5d_flags, size_t_f *h5d_size_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags, - int_f *h5fd_flags, hid_t_f *h5fd_hid_flags, - int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags, - hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags, - hsize_t_f *h5s_hsize_flags, int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags); + int_f *h5fd_flags, hid_t_f *h5fd_hid_flags, + int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags, + hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags, + hsize_t_f *h5s_hsize_flags, int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags, + haddr_t_f *h5_haddr_generic_flags); H5_FCDLL int_f h5init1_flags_c(int_f *h5lib_flags); H5_FCDLL int_f h5get_libversion_c(int_f *majnum, int_f *minnum, int_f *relnum); H5_FCDLL int_f h5check_version_c(int_f *majnum, int_f *minnum, int_f *relnum); diff --git a/fortran/test/fortranlib_test.f90 b/fortran/test/fortranlib_test.f90 index 79ff161..7e3159e 100644 --- a/fortran/test/fortranlib_test.f90 +++ b/fortran/test/fortranlib_test.f90 @@ -93,6 +93,8 @@ PROGRAM fortranlibtest ret_total_error = 0 CALL extenddsettest(cleanup, ret_total_error) CALL write_test_status(ret_total_error, ' Extendible dataset test', total_error) + CALL test_userblock_offset(cleanup, ret_total_error) + CALL write_test_status(ret_total_error, ' Dataset offset with user block', total_error) ! write(*,*) ! write(*,*) '=========================================' diff --git a/fortran/test/tH5D.f90 b/fortran/test/tH5D.f90 index b5febb3..c9ba952 100644 --- a/fortran/test/tH5D.f90 +++ b/fortran/test/tH5D.f90 @@ -343,7 +343,7 @@ CONTAINS !Modify dataset creation properties, i.e. enable chunking ! CALL h5pcreate_f(H5P_DATASET_CREATE_F, crp_list, error) - CALL check("h5pcreat_f",error,total_error) + CALL check("h5pcreate_f",error,total_error) CALL h5pset_chunk_f(crp_list, RANK, dims1, error) CALL check("h5pset_chunk_f",error,total_error) @@ -508,5 +508,123 @@ CONTAINS RETURN END SUBROUTINE extenddsettest + +! +! The following subroutine tests h5dget_offset_f functionality +! + + SUBROUTINE test_userblock_offset(cleanup, total_error) + + USE ISO_C_BINDING + + IMPLICIT NONE + LOGICAL, INTENT(IN) :: cleanup + INTEGER, INTENT(OUT) :: total_error + ! + !the dataset is stored in file "offset.h5" + ! + INTEGER, PARAMETER :: dset_dim1=2, dset_dim2=10 + CHARACTER(LEN=6), PARAMETER :: filename = "offset" + CHARACTER(LEN=80) :: fix_filename + + INTEGER(hid_t) :: file, fcpl, dataset, space + INTEGER :: i, j, n, ios + INTEGER(hsize_t), DIMENSION(1:2) :: dims + INTEGER :: f + INTEGER(haddr_t) :: offset + INTEGER, DIMENSION(1:dset_dim1,1:dset_dim2), TARGET :: rdata, data_in + INTEGER :: error + TYPE(C_PTR) :: f_ptr + ! + !Create a new file using default properties. + ! + CALL h5_fixname_f(filename, fix_filename, H5P_DEFAULT_F, error) + IF (error .NE. 0) THEN + WRITE(*,*) "Cannot modify filename" + STOP + ENDIF + + CALL h5pcreate_f(H5P_FILE_CREATE_F, fcpl, error) + CALL check("h5pcreate_f",error,total_error) + + ! Initialize the dataset + n = 0 + DO i = 1, dset_dim1 + DO j = 1, dset_dim2 + n = n + 1 + data_in(i,j) = n + END DO + END DO + CALL h5fcreate_f(fix_filename, H5F_ACC_TRUNC_F, file, error, fcpl) + CALL check("h5fcreate_f",error,total_error) + + ! Create the data space + dims(1:2) = (/dset_dim1,dset_dim2/) + + CALL h5screate_simple_f(2, dims, space, error) + CALL check("h5screate_simple_f",error,total_error) + + ! Create the dataset + CALL h5dcreate_f(file, "dset1", H5T_NATIVE_INTEGER, space, dataset, error) + CALL check("h5dcreate_f", error, total_error) + + ! Test dataset address. Should be undefined. + CALL h5dget_offset_f(dataset, offset, error) + CALL VERIFY("h5dget_offset_f",offset, HADDR_UNDEF_F, total_error) + + ! Write the data to the dataset + f_ptr = C_LOC(data_in(1,1)) + CALL h5dwrite_f(dataset, H5T_NATIVE_INTEGER, f_ptr, error) + CALL check("h5dwrite_f", error, total_error) + + ! Test dataset address in file. Open the same file as a C file, seek + ! the data position as H5Dget_offset points to, read the dataset, and + ! compare it with the data written in. + CALL h5dget_offset_f(dataset, offset, error) + CALL check("h5dget_offset_f", error, total_error) + IF(offset.EQ.HADDR_UNDEF_F)THEN + total_error = total_error + 1 + ENDIF + + CALL h5dclose_f(dataset, error) + CALL check("h5dclose_f", error, total_error) + CALL h5fclose_f(file, error) + CALL check("h5fclose_f", error, total_error) + + IF(total_error.NE.0) RETURN + + OPEN(10,FILE=fix_filename, ACCESS="STREAM", IOSTAT=ios) + IF(ios.NE.0)THEN + WRITE(*,'(A)') "Failed to open file "//TRIM(fix_filename) + total_error = total_error + 1 + RETURN + ENDIF + ! The pos= specifier illustrates that positions are in bytes, + ! starting from byte 1 (as opposed to C, where they start from byte 0) + READ(10, POS=offset+1, IOSTAT=ios) rdata + IF(ios.NE.0)THEN + WRITE(*,'(A)') "Failed to read data from stream I/O " + total_error = total_error + 1 + CLOSE(10) + RETURN + ENDIF + + ! Check that the values read are the same as the values written + DO i = 1, dset_dim1 + DO j = 1, dset_dim2 + CALL VERIFY("h5dget_offset_f",rdata(i,j), data_in(i,j), total_error) + IF(total_error.NE.0)THEN + WRITE(*,'(A)') " Read different values than written." + WRITE(*,'(2(A,I0))') " At index ",i,",",j + CLOSE(10) + RETURN + ENDIF + END DO + END DO + + CLOSE(10) + + END SUBROUTINE test_userblock_offset + END MODULE TH5D |