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-rw-r--r--testpar/t_coll_chunk.c10
-rw-r--r--testpar/t_dset.c130
-rw-r--r--testpar/t_filter_read.c4
-rw-r--r--testpar/t_mpi.c2
-rw-r--r--testpar/t_posix_compliant.c32
5 files changed, 89 insertions, 89 deletions
diff --git a/testpar/t_coll_chunk.c b/testpar/t_coll_chunk.c
index 73e7f09..5dac36f 100644
--- a/testpar/t_coll_chunk.c
+++ b/testpar/t_coll_chunk.c
@@ -553,7 +553,7 @@ coll_chunktest(const char* filename,
/* allocate memory for data buffer */
- data_array1 = (int *)malloc(dims[0] * dims[1] * sizeof(int));
+ data_array1 = (int *)HDmalloc(dims[0] * dims[1] * sizeof(int));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
/* set up dimensions of the slab this process accesses */
@@ -748,11 +748,11 @@ coll_chunktest(const char* filename,
/* Use collective read to verify the correctness of collective write. */
/* allocate memory for data buffer */
- data_array1 = (int *)malloc(dims[0]*dims[1]*sizeof(int));
+ data_array1 = (int *)HDmalloc(dims[0]*dims[1]*sizeof(int));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
/* allocate memory for data buffer */
- data_origin1 = (int *)malloc(dims[0]*dims[1]*sizeof(int));
+ data_origin1 = (int *)HDmalloc(dims[0]*dims[1]*sizeof(int));
VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
acc_plist = create_faccess_plist(comm, info, facc_type, use_gpfs);
@@ -813,8 +813,8 @@ coll_chunktest(const char* filename,
H5Fclose(file);
/* release data buffers */
- if (data_array1) free(data_array1);
- if (data_origin1) free(data_origin1);
+ if (data_array1) HDfree(data_array1);
+ if (data_origin1) HDfree(data_origin1);
}
diff --git a/testpar/t_dset.c b/testpar/t_dset.c
index 743de3a..34ccab7 100644
--- a/testpar/t_dset.c
+++ b/testpar/t_dset.c
@@ -255,8 +255,8 @@ dataset_writeInd(void)
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* ----------------------------------------
* CREATE AN HDF5 FILE WITH PARALLEL ACCESS
@@ -365,7 +365,7 @@ MPI_Barrier(MPI_COMM_WORLD);
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
+ if(data_array1) HDfree(data_array1);
}
/* Example of using the parallel HDF5 library to read a dataset */
@@ -401,10 +401,10 @@ dataset_readInd(void)
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- data_origin1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
+ data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* setup file access template */
acc_tpl = create_faccess_plist(comm, info, facc_type, use_gpfs);
@@ -474,8 +474,8 @@ dataset_readInd(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
- if(data_origin1) free(data_origin1);
+ if(data_array1) HDfree(data_array1);
+ if(data_origin1) HDfree(data_origin1);
}
@@ -527,8 +527,8 @@ dataset_writeAll(void)
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* -------------------
* START AN HDF5 FILE
@@ -862,7 +862,7 @@ dataset_writeAll(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
+ if(data_array1) HDfree(data_array1);
}
/*
@@ -907,10 +907,10 @@ dataset_readAll(void)
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- data_origin1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
+ data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* -------------------
* OPEN AN HDF5 FILE
@@ -1090,8 +1090,8 @@ dataset_readAll(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
- if(data_origin1) free(data_origin1);
+ if(data_array1) HDfree(data_array1);
+ if(data_origin1) HDfree(data_origin1);
}
@@ -1149,8 +1149,8 @@ extend_writeInd(void)
chunk_dims[1] = chunkdim1;
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* -------------------
* START AN HDF5 FILE
@@ -1329,7 +1329,7 @@ extend_writeInd(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
+ if(data_array1) HDfree(data_array1);
}
/*
@@ -1535,12 +1535,12 @@ extend_readInd(void)
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- data_array2 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array2 != NULL), "data_array2 malloc succeeded");
- data_origin1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
+ data_array2 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array2 != NULL), "data_array2 HDmalloc succeeded");
+ data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* -------------------
* OPEN AN HDF5 FILE
@@ -1663,9 +1663,9 @@ extend_readInd(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
- if(data_array2) free(data_array2);
- if(data_origin1) free(data_origin1);
+ if(data_array1) HDfree(data_array1);
+ if(data_array2) HDfree(data_array2);
+ if(data_origin1) HDfree(data_origin1);
}
/*
@@ -1723,8 +1723,8 @@ extend_writeAll(void)
chunk_dims[1] = chunkdim1;
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* -------------------
* START AN HDF5 FILE
@@ -1928,7 +1928,7 @@ extend_writeAll(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
+ if(data_array1) HDfree(data_array1);
}
/* Example of using the parallel HDF5 library to read an extendible dataset */
@@ -1967,12 +1967,12 @@ extend_readAll(void)
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- data_array2 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array2 != NULL), "data_array2 malloc succeeded");
- data_origin1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
+ data_array2 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array2 != NULL), "data_array2 HDmalloc succeeded");
+ data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* -------------------
* OPEN AN HDF5 FILE
@@ -2119,9 +2119,9 @@ extend_readAll(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
- if(data_array2) free(data_array2);
- if(data_origin1) free(data_origin1);
+ if(data_array1) HDfree(data_array1);
+ if(data_array2) HDfree(data_array2);
+ if(data_origin1) HDfree(data_origin1);
}
/*
@@ -2161,9 +2161,9 @@ compress_readAll(void)
/* Allocate data buffer */
data_orig = (DATATYPE *)HDmalloc((size_t)dim*sizeof(DATATYPE));
- VRFY((data_orig != NULL), "data_origin1 malloc succeeded");
+ VRFY((data_orig != NULL), "data_origin1 HDmalloc succeeded");
data_read = (DATATYPE *)HDmalloc((size_t)dim*sizeof(DATATYPE));
- VRFY((data_read != NULL), "data_array1 malloc succeeded");
+ VRFY((data_read != NULL), "data_array1 HDmalloc succeeded");
/* Initialize data buffers */
for(u=0; u<dim;u++)
@@ -2394,11 +2394,11 @@ none_selection_chunk(void)
/* allocate memory for data buffer. Only allocate enough buffer for
* each processor's data. */
if(mpi_rank) {
- data_origin = (DATATYPE *)malloc(block[0]*block[1]*sizeof(DATATYPE));
- VRFY((data_origin != NULL), "data_origin malloc succeeded");
+ data_origin = (DATATYPE *)HDmalloc(block[0]*block[1]*sizeof(DATATYPE));
+ VRFY((data_origin != NULL), "data_origin HDmalloc succeeded");
- data_array = (DATATYPE *)malloc(block[0]*block[1]*sizeof(DATATYPE));
- VRFY((data_array != NULL), "data_array malloc succeeded");
+ data_array = (DATATYPE *)HDmalloc(block[0]*block[1]*sizeof(DATATYPE));
+ VRFY((data_array != NULL), "data_array HDmalloc succeeded");
/* put some trivial data in the data_array */
mstart[0] = mstart[1] = 0;
@@ -2495,8 +2495,8 @@ none_selection_chunk(void)
H5Fclose(fid);
/* release data buffers */
- if(data_origin) free(data_origin);
- if(data_array) free(data_array);
+ if(data_origin) HDfree(data_origin);
+ if(data_array) HDfree(data_array);
}
@@ -2849,7 +2849,7 @@ test_actual_io_mode(int selection_mode) {
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * length);
- VRFY((buffer != NULL), "malloc of buffer succeeded");
+ VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
for(i = 0; i < length; i++)
buffer[i] = i;
@@ -3323,7 +3323,7 @@ test_no_collective_cause_mode(int selection_mode)
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * length);
- VRFY((buffer != NULL), "malloc of buffer succeeded");
+ VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
for(i = 0; i < length; i++)
buffer[i] = i;
@@ -3571,7 +3571,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * length);
- VRFY((buffer != NULL), "malloc of buffer succeeded");
+ VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
for(i = 0; i < length; i++)
buffer[i] = i;
@@ -3763,11 +3763,11 @@ dataset_atomicity(void)
buf_size = dim0 * dim1;
/* allocate memory for data buffer */
- write_buf = (int *)calloc(buf_size, sizeof(int));
- VRFY((write_buf != NULL), "write_buf malloc succeeded");
+ write_buf = (int *)HDcalloc(buf_size, sizeof(int));
+ VRFY((write_buf != NULL), "write_buf HDcalloc succeeded");
/* allocate memory for data buffer */
- read_buf = (int *)calloc(buf_size, sizeof(int));
- VRFY((read_buf != NULL), "read_buf malloc succeeded");
+ read_buf = (int *)HDcalloc(buf_size, sizeof(int));
+ VRFY((read_buf != NULL), "read_buf HDcalloc succeeded");
/* setup file access template */
acc_tpl = create_faccess_plist(comm, info, facc_type, use_gpfs);
@@ -3909,19 +3909,19 @@ dataset_atomicity(void)
VRFY((ret >= 0), "H5D close succeeded");
/* release data buffers */
- if(write_buf) free(write_buf);
- if(read_buf) free(read_buf);
+ if(write_buf) HDfree(write_buf);
+ if(read_buf) HDfree(read_buf);
/* open dataset2 (non-contiguous case) */
dataset2 = H5Dopen2(fid, DATASETNAME6, H5P_DEFAULT);
VRFY((dataset2 >= 0), "H5Dopen2 succeeded");
/* allocate memory for data buffer */
- write_buf = (int *)calloc(buf_size, sizeof(int));
- VRFY((write_buf != NULL), "write_buf malloc succeeded");
+ write_buf = (int *)HDcalloc(buf_size, sizeof(int));
+ VRFY((write_buf != NULL), "write_buf HDcalloc succeeded");
/* allocate memory for data buffer */
- read_buf = (int *)calloc(buf_size, sizeof(int));
- VRFY((read_buf != NULL), "read_buf malloc succeeded");
+ read_buf = (int *)HDcalloc(buf_size, sizeof(int));
+ VRFY((read_buf != NULL), "read_buf HDcalloc succeeded");
for (i=0 ; i<buf_size ; i++) {
write_buf[i] = 5;
@@ -4031,8 +4031,8 @@ dataset_atomicity(void)
VRFY((ret >= 0), "H5Sclose succeeded");
/* release data buffers */
- if(write_buf) free(write_buf);
- if(read_buf) free(read_buf);
+ if(write_buf) HDfree(write_buf);
+ if(read_buf) HDfree(read_buf);
ret = H5Fclose(fid);
VRFY((ret >= 0), "H5Fclose succeeded");
diff --git a/testpar/t_filter_read.c b/testpar/t_filter_read.c
index f38b30e..7e782ce 100644
--- a/testpar/t_filter_read.c
+++ b/testpar/t_filter_read.c
@@ -186,8 +186,8 @@ filter_read_internal(const char *filename, hid_t dcpl,
hrc = H5Fclose (file);
VRFY(hrc>=0, "H5Fclose");
- free(points);
- free(check);
+ HDfree(points);
+ HDfree(check);
MPI_Barrier(MPI_COMM_WORLD);
}
diff --git a/testpar/t_mpi.c b/testpar/t_mpi.c
index fa9cf9d..a74aa22 100644
--- a/testpar/t_mpi.c
+++ b/testpar/t_mpi.c
@@ -282,7 +282,7 @@ test_mpio_gb_file(char *filename)
printf("Skipped GB file range test "
"because MPI_Offset cannot support it\n");
}else{
- buf = malloc(MB);
+ buf = HDmalloc(MB);
VRFY((buf!=NULL), "malloc succeed");
/* open a new file. Remove it first in case it exists. */
diff --git a/testpar/t_posix_compliant.c b/testpar/t_posix_compliant.c
index 1bc0053..207f07e 100644
--- a/testpar/t_posix_compliant.c
+++ b/testpar/t_posix_compliant.c
@@ -105,8 +105,8 @@ static int allwrite_allread_blocks(int numprocs, int rank, int write_size)
int amode, i;
MPI_Offset offset = rank*write_size*sizeof(int);
MPI_Status Status;
- int* writebuf = (int*)malloc(write_size*sizeof(int));
- int* readbuf = (int*)malloc (write_size*sizeof(int));
+ int* writebuf = (int*)HDmalloc(write_size*sizeof(int));
+ int* readbuf = (int*)HDmalloc (write_size*sizeof(int));
for(i=0; i<write_size; i++)
writebuf[i] = i;
@@ -143,8 +143,8 @@ static int posix_allwrite_allread_blocks(int numprocs, int rank, int write_size)
int ret;
int i;
int offset = rank*write_size*sizeof(int);
- int* writebuf = (int*)malloc(write_size*sizeof(int));
- int* readbuf = (int*)malloc (write_size*sizeof(int));
+ int* writebuf = (int*)HDmalloc(write_size*sizeof(int));
+ int* readbuf = (int*)HDmalloc (write_size*sizeof(int));
FILE* file = NULL;
for(i=0; i<write_size; i++)
@@ -216,8 +216,8 @@ static int posix_onewrite_allread_blocks(int numprocs, int rank, int write_size)
int ret;
int i;
int offset = rank*write_size*sizeof(int);
- int* writebuf = (int*)malloc(write_size*sizeof(int));
- int* readbuf = (int*)malloc (write_size*sizeof(int));
+ int* writebuf = (int*)HDmalloc(write_size*sizeof(int));
+ int* readbuf = (int*)HDmalloc (write_size*sizeof(int));
FILE* file = NULL;
for(i=0; i<write_size; i++)
@@ -295,8 +295,8 @@ static int posix_onewrite_allread_interlaced(int numprocs, int rank, int write_s
int ret;
int i, fill, index;
int offset = rank*write_size*sizeof(int);
- int* writebuf = (int*)malloc(write_size*sizeof(int));
- int* readbuf = (int*)malloc (write_size*sizeof(int));
+ int* writebuf = (int*)HDmalloc(write_size*sizeof(int));
+ int* readbuf = (int*)HDmalloc (write_size*sizeof(int));
FILE* file = NULL;
if(rank==0)
@@ -389,8 +389,8 @@ static int allwrite_allread_interlaced(int numprocs, int rank, int write_size)
int amode, i, counter = 0;
MPI_Datatype filetype;
MPI_Status Status;
- int* writebuf = (int*)malloc(write_size*sizeof(int));
- int* readbuf = (int*) malloc(numprocs*sizeof(int));
+ int* writebuf = (int*)HDmalloc(write_size*sizeof(int));
+ int* readbuf = (int*) HDmalloc(numprocs*sizeof(int));
int offset=0;
for(i=0; i<write_size; i++)
@@ -488,8 +488,8 @@ static int allwrite_allread_overlap(int numprocs, int rank, int write_size)
int amode, i, counter = 0;
MPI_Datatype filetype;
MPI_Status Status;
- int* writebuf = (int*) malloc(write_size*(numprocs-1)*sizeof(int)); /* An upper bound...not all the elements will be written */
- int* readbuf = (int*) malloc(write_size*(numprocs-1)*sizeof(int));
+ int* writebuf = (int*) HDmalloc(write_size*(numprocs-1)*sizeof(int)); /* An upper bound...not all the elements will be written */
+ int* readbuf = (int*) HDmalloc(write_size*(numprocs-1)*sizeof(int));
if(numprocs < 2)
{
@@ -581,8 +581,8 @@ static int onewrite_allread_blocks(int numprocs, int rank, int write_size)
int mpio_result;
int amode, i;
MPI_Status Status;
- int* writebuf = (int*)malloc(write_size*sizeof(int));
- int* readbuf = (int*)malloc (write_size*sizeof(int));
+ int* writebuf = (int*)HDmalloc(write_size*sizeof(int));
+ int* readbuf = (int*)HDmalloc (write_size*sizeof(int));
for(i=0; i<write_size; i++)
writebuf[i] = i;
@@ -632,8 +632,8 @@ static int onewrite_allread_interlaced(int numprocs, int rank, int write_size)
int amode, i;
MPI_Datatype filetype;
MPI_Status Status;
- int* writebuf = (int*) malloc(numprocs*write_size*sizeof(int)); /* Upper bound, not all used */
- int* readbuf = (int*)malloc (write_size*sizeof(int));
+ int* writebuf = (int*) HDmalloc(numprocs*write_size*sizeof(int)); /* Upper bound, not all used */
+ int* readbuf = (int*)HDmalloc (write_size*sizeof(int));
amode = MPI_MODE_CREATE | MPI_MODE_RDWR;
generated by cgit v0.12 at 2024-11-08 03:21:18 (GMT)