diff options
-rw-r--r-- | hl/src/H5LTanalyze.c | 147 | ||||
-rw-r--r-- | hl/src/H5LTanalyze.l | 5 | ||||
-rw-r--r-- | hl/test/dtype_file.txt | 1 | ||||
-rw-r--r-- | hl/test/test_lite.c | 88 |
4 files changed, 170 insertions, 71 deletions
diff --git a/hl/src/H5LTanalyze.c b/hl/src/H5LTanalyze.c index c8aa65c..2b31f11 100644 --- a/hl/src/H5LTanalyze.c +++ b/hl/src/H5LTanalyze.c @@ -784,7 +784,12 @@ int my_yyinput(char *, int); #undef YY_INPUT #define YY_INPUT(b, r, ms) (r=my_yyinput(b, ms)) #define token(x) (int)x + +#ifdef YY_BUF_SIZE +#undef YY_BUF_SIZE +#endif #define YY_BUF_SIZE 262144 /*Define read buffer to be 256K*/ + extern char *myinput; extern int input_len; @@ -827,7 +832,7 @@ char *myinput;*/ #define TAG_STRING 1 -#line 810 "H5LTanalyze.c" +#line 815 "H5LTanalyze.c" /* Macros after this point can all be overridden by user definitions in * section 1. @@ -978,10 +983,10 @@ YY_DECL register char *yy_cp = NULL, *yy_bp = NULL; register int yy_act; -#line 70 "H5LTanalyze.l" +#line 75 "H5LTanalyze.l" -#line 964 "H5LTanalyze.c" +#line 969 "H5LTanalyze.c" if ( yy_init ) { @@ -1067,277 +1072,277 @@ do_action: /* This label is used only to access EOF actions. */ { /* beginning of action switch */ case 1: YY_RULE_SETUP -#line 72 "H5LTanalyze.l" +#line 77 "H5LTanalyze.l" {return token(H5T_STD_I8BE_TOKEN);} YY_BREAK case 2: YY_RULE_SETUP -#line 73 "H5LTanalyze.l" +#line 78 "H5LTanalyze.l" {return token(H5T_STD_I8LE_TOKEN);} YY_BREAK case 3: YY_RULE_SETUP -#line 74 "H5LTanalyze.l" +#line 79 "H5LTanalyze.l" {return token(H5T_STD_I16BE_TOKEN);} YY_BREAK case 4: YY_RULE_SETUP -#line 75 "H5LTanalyze.l" +#line 80 "H5LTanalyze.l" {return token(H5T_STD_I16LE_TOKEN);} YY_BREAK case 5: YY_RULE_SETUP -#line 76 "H5LTanalyze.l" +#line 81 "H5LTanalyze.l" {return token(H5T_STD_I32BE_TOKEN);} YY_BREAK case 6: YY_RULE_SETUP -#line 77 "H5LTanalyze.l" +#line 82 "H5LTanalyze.l" {return token(H5T_STD_I32LE_TOKEN);} YY_BREAK case 7: YY_RULE_SETUP -#line 78 "H5LTanalyze.l" +#line 83 "H5LTanalyze.l" {return token(H5T_STD_I64BE_TOKEN);} YY_BREAK case 8: YY_RULE_SETUP -#line 79 "H5LTanalyze.l" +#line 84 "H5LTanalyze.l" {return token(H5T_STD_I64LE_TOKEN);} YY_BREAK case 9: YY_RULE_SETUP -#line 81 "H5LTanalyze.l" +#line 86 "H5LTanalyze.l" {return token(H5T_STD_U8BE_TOKEN);} YY_BREAK case 10: YY_RULE_SETUP -#line 82 "H5LTanalyze.l" +#line 87 "H5LTanalyze.l" {return token(H5T_STD_U8LE_TOKEN);} YY_BREAK case 11: YY_RULE_SETUP -#line 83 "H5LTanalyze.l" +#line 88 "H5LTanalyze.l" {return token(H5T_STD_U16BE_TOKEN);} YY_BREAK case 12: YY_RULE_SETUP -#line 84 "H5LTanalyze.l" +#line 89 "H5LTanalyze.l" {return token(H5T_STD_U16LE_TOKEN);} YY_BREAK case 13: YY_RULE_SETUP -#line 85 "H5LTanalyze.l" +#line 90 "H5LTanalyze.l" {return token(H5T_STD_U32BE_TOKEN);} YY_BREAK case 14: YY_RULE_SETUP -#line 86 "H5LTanalyze.l" +#line 91 "H5LTanalyze.l" {return token(H5T_STD_U32LE_TOKEN);} YY_BREAK case 15: YY_RULE_SETUP -#line 87 "H5LTanalyze.l" +#line 92 "H5LTanalyze.l" {return token(H5T_STD_U64BE_TOKEN);} YY_BREAK case 16: YY_RULE_SETUP -#line 88 "H5LTanalyze.l" +#line 93 "H5LTanalyze.l" {return token(H5T_STD_U64LE_TOKEN);} YY_BREAK case 17: YY_RULE_SETUP -#line 90 "H5LTanalyze.l" +#line 95 "H5LTanalyze.l" {return token(H5T_NATIVE_CHAR_TOKEN);} YY_BREAK case 18: YY_RULE_SETUP -#line 91 "H5LTanalyze.l" +#line 96 "H5LTanalyze.l" {return token(H5T_NATIVE_SCHAR_TOKEN);} YY_BREAK case 19: YY_RULE_SETUP -#line 92 "H5LTanalyze.l" +#line 97 "H5LTanalyze.l" {return token(H5T_NATIVE_UCHAR_TOKEN);} YY_BREAK case 20: YY_RULE_SETUP -#line 93 "H5LTanalyze.l" +#line 98 "H5LTanalyze.l" {return token(H5T_NATIVE_SHORT_TOKEN);} YY_BREAK case 21: YY_RULE_SETUP -#line 94 "H5LTanalyze.l" +#line 99 "H5LTanalyze.l" {return token(H5T_NATIVE_USHORT_TOKEN);} YY_BREAK case 22: YY_RULE_SETUP -#line 95 "H5LTanalyze.l" +#line 100 "H5LTanalyze.l" {return token(H5T_NATIVE_INT_TOKEN);} YY_BREAK case 23: YY_RULE_SETUP -#line 96 "H5LTanalyze.l" +#line 101 "H5LTanalyze.l" {return token(H5T_NATIVE_UINT_TOKEN);} YY_BREAK case 24: YY_RULE_SETUP -#line 97 "H5LTanalyze.l" +#line 102 "H5LTanalyze.l" {return token(H5T_NATIVE_LONG_TOKEN);} YY_BREAK case 25: YY_RULE_SETUP -#line 98 "H5LTanalyze.l" +#line 103 "H5LTanalyze.l" {return token(H5T_NATIVE_ULONG_TOKEN);} YY_BREAK case 26: YY_RULE_SETUP -#line 99 "H5LTanalyze.l" +#line 104 "H5LTanalyze.l" {return token(H5T_NATIVE_LLONG_TOKEN);} YY_BREAK case 27: YY_RULE_SETUP -#line 100 "H5LTanalyze.l" +#line 105 "H5LTanalyze.l" {return token(H5T_NATIVE_ULLONG_TOKEN);} YY_BREAK case 28: YY_RULE_SETUP -#line 102 "H5LTanalyze.l" +#line 107 "H5LTanalyze.l" {return token(H5T_IEEE_F32BE_TOKEN);} YY_BREAK case 29: YY_RULE_SETUP -#line 103 "H5LTanalyze.l" +#line 108 "H5LTanalyze.l" {return token(H5T_IEEE_F32LE_TOKEN);} YY_BREAK case 30: YY_RULE_SETUP -#line 104 "H5LTanalyze.l" +#line 109 "H5LTanalyze.l" {return token(H5T_IEEE_F64BE_TOKEN);} YY_BREAK case 31: YY_RULE_SETUP -#line 105 "H5LTanalyze.l" +#line 110 "H5LTanalyze.l" {return token(H5T_IEEE_F64LE_TOKEN);} YY_BREAK case 32: YY_RULE_SETUP -#line 106 "H5LTanalyze.l" +#line 111 "H5LTanalyze.l" {return token(H5T_NATIVE_FLOAT_TOKEN);} YY_BREAK case 33: YY_RULE_SETUP -#line 107 "H5LTanalyze.l" +#line 112 "H5LTanalyze.l" {return token(H5T_NATIVE_DOUBLE_TOKEN);} YY_BREAK case 34: YY_RULE_SETUP -#line 108 "H5LTanalyze.l" +#line 113 "H5LTanalyze.l" {return token(H5T_NATIVE_LDOUBLE_TOKEN);} YY_BREAK case 35: YY_RULE_SETUP -#line 110 "H5LTanalyze.l" +#line 115 "H5LTanalyze.l" {return token(H5T_STRING_TOKEN);} YY_BREAK case 36: YY_RULE_SETUP -#line 111 "H5LTanalyze.l" +#line 116 "H5LTanalyze.l" {return token(STRSIZE_TOKEN);} YY_BREAK case 37: YY_RULE_SETUP -#line 112 "H5LTanalyze.l" +#line 117 "H5LTanalyze.l" {return token(STRPAD_TOKEN);} YY_BREAK case 38: YY_RULE_SETUP -#line 113 "H5LTanalyze.l" +#line 118 "H5LTanalyze.l" {return token(CSET_TOKEN);} YY_BREAK case 39: YY_RULE_SETUP -#line 114 "H5LTanalyze.l" +#line 119 "H5LTanalyze.l" {return token(CTYPE_TOKEN);} YY_BREAK case 40: YY_RULE_SETUP -#line 115 "H5LTanalyze.l" +#line 120 "H5LTanalyze.l" {return token(H5T_STR_NULLTERM_TOKEN);} YY_BREAK case 41: YY_RULE_SETUP -#line 116 "H5LTanalyze.l" +#line 121 "H5LTanalyze.l" {return token(H5T_STR_NULLPAD_TOKEN);} YY_BREAK case 42: YY_RULE_SETUP -#line 117 "H5LTanalyze.l" +#line 122 "H5LTanalyze.l" {return token(H5T_STR_SPACEPAD_TOKEN);} YY_BREAK case 43: YY_RULE_SETUP -#line 118 "H5LTanalyze.l" +#line 123 "H5LTanalyze.l" {return token(H5T_CSET_ASCII_TOKEN);} YY_BREAK case 44: YY_RULE_SETUP -#line 119 "H5LTanalyze.l" +#line 124 "H5LTanalyze.l" {return token(H5T_CSET_UTF8_TOKEN);} YY_BREAK case 45: YY_RULE_SETUP -#line 120 "H5LTanalyze.l" +#line 125 "H5LTanalyze.l" {return token(H5T_C_S1_TOKEN);} YY_BREAK case 46: YY_RULE_SETUP -#line 121 "H5LTanalyze.l" +#line 126 "H5LTanalyze.l" {return token(H5T_FORTRAN_S1_TOKEN);} YY_BREAK case 47: YY_RULE_SETUP -#line 122 "H5LTanalyze.l" +#line 127 "H5LTanalyze.l" {return token(H5T_VARIABLE_TOKEN);} YY_BREAK case 48: YY_RULE_SETUP -#line 124 "H5LTanalyze.l" +#line 129 "H5LTanalyze.l" {return token(H5T_COMPOUND_TOKEN);} YY_BREAK case 49: YY_RULE_SETUP -#line 125 "H5LTanalyze.l" +#line 130 "H5LTanalyze.l" {return token(H5T_ENUM_TOKEN);} YY_BREAK case 50: YY_RULE_SETUP -#line 126 "H5LTanalyze.l" +#line 131 "H5LTanalyze.l" {return token(H5T_ARRAY_TOKEN);} YY_BREAK case 51: YY_RULE_SETUP -#line 127 "H5LTanalyze.l" +#line 132 "H5LTanalyze.l" {return token(H5T_VLEN_TOKEN);} YY_BREAK case 52: YY_RULE_SETUP -#line 129 "H5LTanalyze.l" +#line 134 "H5LTanalyze.l" {return token(H5T_OPAQUE_TOKEN);} YY_BREAK case 53: YY_RULE_SETUP -#line 130 "H5LTanalyze.l" +#line 135 "H5LTanalyze.l" {return token(OPQ_SIZE_TOKEN);} YY_BREAK case 54: YY_RULE_SETUP -#line 131 "H5LTanalyze.l" +#line 136 "H5LTanalyze.l" {return token(OPQ_TAG_TOKEN);} YY_BREAK case 55: YY_RULE_SETUP -#line 133 "H5LTanalyze.l" +#line 138 "H5LTanalyze.l" { if( is_str_size || (is_enum && is_enum_memb) || is_opq_size || (asindex>-1 && arr_stack[asindex].is_dim) || @@ -1350,7 +1355,7 @@ YY_RULE_SETUP YY_BREAK case 56: YY_RULE_SETUP -#line 143 "H5LTanalyze.l" +#line 148 "H5LTanalyze.l" { /*if it's first quote, and is a compound field name or an enum symbol*/ if((is_opq_tag || is_enum || (csindex>-1 && cmpd_stack[csindex].is_field)) @@ -1364,7 +1369,7 @@ YY_RULE_SETUP YY_BREAK case 57: YY_RULE_SETUP -#line 153 "H5LTanalyze.l" +#line 158 "H5LTanalyze.l" { yylval.sval = strdup(yytext); BEGIN INITIAL; @@ -1373,50 +1378,50 @@ YY_RULE_SETUP YY_BREAK case 58: YY_RULE_SETUP -#line 159 "H5LTanalyze.l" +#line 164 "H5LTanalyze.l" {return token('{');} YY_BREAK case 59: YY_RULE_SETUP -#line 160 "H5LTanalyze.l" +#line 165 "H5LTanalyze.l" {return token('}');} YY_BREAK case 60: YY_RULE_SETUP -#line 161 "H5LTanalyze.l" +#line 166 "H5LTanalyze.l" {return token('[');} YY_BREAK case 61: YY_RULE_SETUP -#line 162 "H5LTanalyze.l" +#line 167 "H5LTanalyze.l" {return token(']');} YY_BREAK case 62: YY_RULE_SETUP -#line 163 "H5LTanalyze.l" +#line 168 "H5LTanalyze.l" {return token(':');} YY_BREAK case 63: YY_RULE_SETUP -#line 164 "H5LTanalyze.l" +#line 169 "H5LTanalyze.l" {return token(';');} YY_BREAK case 64: YY_RULE_SETUP -#line 165 "H5LTanalyze.l" +#line 170 "H5LTanalyze.l" ; YY_BREAK case 65: YY_RULE_SETUP -#line 166 "H5LTanalyze.l" +#line 171 "H5LTanalyze.l" { return 0; } YY_BREAK case 66: YY_RULE_SETUP -#line 168 "H5LTanalyze.l" +#line 173 "H5LTanalyze.l" ECHO; YY_BREAK -#line 1399 "H5LTanalyze.c" +#line 1404 "H5LTanalyze.c" case YY_STATE_EOF(INITIAL): case YY_STATE_EOF(TAG_STRING): yyterminate(); @@ -2292,7 +2297,7 @@ int main() return 0; } #endif -#line 168 "H5LTanalyze.l" +#line 173 "H5LTanalyze.l" int my_yyinput(char *buf, int max_size) { diff --git a/hl/src/H5LTanalyze.l b/hl/src/H5LTanalyze.l index 97cde91..15e316e 100644 --- a/hl/src/H5LTanalyze.l +++ b/hl/src/H5LTanalyze.l @@ -22,7 +22,12 @@ int my_yyinput(char *, int); #undef YY_INPUT #define YY_INPUT(b, r, ms) (r=my_yyinput(b, ms)) #define token(x) (int)x + +#ifdef YY_BUF_SIZE +#undef YY_BUF_SIZE +#endif #define YY_BUF_SIZE 262144 /*Define read buffer to be 256K*/ + extern char *myinput; extern int input_len; diff --git a/hl/test/dtype_file.txt b/hl/test/dtype_file.txt new file mode 100644 index 0000000..0ccae94 --- /dev/null +++ b/hl/test/dtype_file.txt @@ -0,0 +1 @@ +H5T_COMPOUND { H5T_NATIVE_INT "rs#"; H5T_ENUM { H5T_NATIVE_CHAR; "A/A" 0; "A/C" 1; "A/T" 2; "A/G" 3; "A/N" 4; "C/A" 5; "C/C" 6; "C/T" 7; "C/G" 8; "C/N" 9; "T/A" 10; "T/C" 11; "T/T" 12; "T/G" 13; "T/N" 14; "G/A" 15; "G/C" 16; "G/T" 17; "G/G" 18; "G/N" 19; "N/A" 20; "N/C" 21; "N/T" 22; "N/G" 23; "N/N" 24; } "SNPAllelels"; H5T_NATIVE_INT "chrom"; H5T_NATIVE_INT "pos"; H5T_ENUM { H5T_NATIVE_CHAR; "+" 0; "-" 1; } "strand"; H5T_STRING { STRSIZE H5T_VARIABLE; STRPAD H5T_STR_NULLPAD; CSET H5T_CSET_ASCII; CTYPE H5T_C_S1; } "genome_build"; H5T_STRING { STRSIZE H5T_VARIABLE; STRPAD H5T_STR_NULLPAD; CSET H5T_CSET_ASCII; CTYPE H5T_C_S1; } "center"; H5T_STRING { STRSIZE H5T_VARIABLE; STRPAD H5T_STR_NULLPAD; CSET H5T_CSET_ASCII; CTYPE H5T_C_S1; } "protLSID"; H5T_STRING { STRSIZE H5T_VARIABLE; STRPAD H5T_STR_NULLPAD; CSET H5T_CSET_ASCII; CTYPE H5T_C_S1; }"assayLSID"; H5T_STRING { STRSIZE H5T_VARIABLE; STRPAD H5T_STR_NULLPAD; CSET H5T_CSET_ASCII; CTYPE H5T_C_S1; } "panelLSID"; H5T_ENUM { H5T_NATIVE_CHAR; "+" 0; "-" 1; } "QC_code"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA06985"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA06991"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA06993"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA06994"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07000"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07019"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07022"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07029"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07034"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07048"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07055"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07056"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07345"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07348"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07357"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10830"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10831"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10835"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10838"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10839"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10846"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10847"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10851"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10854"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10855"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10856"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10857"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10859"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10860"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10861"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10863"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11829"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11830"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11831"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11832"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11839"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11840"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11881"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11882"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11992"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11993"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11994"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11995"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12003"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12004"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12005"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12006"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12043"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12044"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12056"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12057"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12144"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12145"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12146"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12154"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12155"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12156"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12234"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12236"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12239"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12248"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12249"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12264"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12707"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12716"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12717"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12740"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12750"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12751"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12752"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12753"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12760"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12761"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12762"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12763"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12801"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12802"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12812"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12813"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12814"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12815"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12864"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12865"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12872"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12873"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12874"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12875"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12878"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12891"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12892";} diff --git a/hl/test/test_lite.c b/hl/test/test_lite.c index 705cf3a..07002e0 100644 --- a/hl/test/test_lite.c +++ b/hl/test/test_lite.c @@ -19,6 +19,7 @@ #define FILE_NAME "test_lite1.h5" #define FILE_NAME2 "test_lite2.h5" +#define INPUT_FILE "dtype_file.txt" #define DSET0_NAME "2D int array" #define DSET1_NAME "dataset char" @@ -43,6 +44,9 @@ #define ATTR10_NAME "attr float" #define ATTR11_NAME "attr double" +/*Initial input buffer size for testing H5LTtext_to_dtype()*/ +#define BUF_SIZE 1024 + static herr_t make_attributes( hid_t loc_id, const char* obj_name ); @@ -1513,6 +1517,87 @@ out: } /*------------------------------------------------------------------------- + * subroutine for test_text_dtype(): test_complicated_compound(). + *------------------------------------------------------------------------- + */ +static int test_complicated_compound(void) +{ + hid_t dtype; + int nmembs; + H5T_class_t type_class; + size_t str_len; + char* line=NULL; + FILE *fp; + int size = 1024; + char *srcdir = getenv("srcdir"); /* the source directory */ + char filename[1024]=""; + + TESTING3(" text for complicated compound types"); + + /* compose the name of the file to open, using the srcdir, if appropriate */ + if(srcdir) + { + strcpy(filename, srcdir); + strcat(filename, "/"); + } + strcat(filename, INPUT_FILE); + + /* Open input file */ + fp = fopen(filename, "r"); + if(fp == NULL) + { + printf( "Could not find file %s. Try set $srcdir \n", filename); + goto out; + } + + /* This part reads in the input as a string in a slow manner. GNU C + * Library has convenient function getline() but isn't available on + * all machines. + */ + if((line = (char*)calloc(size, sizeof(char)))==NULL) + goto out; + if(fgets(line, size, fp)==NULL) + goto out; + while(strlen(line)==size-1) { + size *= 2; + if(line) + free(line); + if((line = (char*)calloc(size, sizeof(char)))==NULL) + goto out; + if(fseek(fp, 0L, SEEK_SET)!=0) + goto out; + if(fgets(line, size, fp)==NULL) + goto out; + } + + fclose(fp); + + if((dtype = H5LTtext_to_dtype(line, H5LT_DDL))<0) + goto out; + + if((type_class = H5Tget_class(dtype))<0) + goto out; + if(type_class != H5T_COMPOUND) + goto out; + + /* There should be 101 compound members */ + if((nmembs = H5Tget_nmembers(dtype))<0) + goto out; + if(nmembs != 101) + goto out; + + if(line) + free(line); + + PASSED(); + return 0; + +out: + H5_FAILED(); + return -1; +} + +/*------------------------------------------------------------------------- * test H5LTtext_to_dtype function *------------------------------------------------------------------------- */ @@ -1543,6 +1628,9 @@ static int test_text_dtype(void) if(test_compounds()<0) goto out; + + if(test_complicated_compound()<0) + goto out; return 0; |