diff options
22 files changed, 262 insertions, 138 deletions
@@ -2552,16 +2552,26 @@ ./tools/test/h5repack/testfiles/h5repack_early.h5 ./tools/test/h5repack/testfiles/h5repack_ext.bin ./tools/test/h5repack/testfiles/h5repack_ext.h5 +./tools/test/h5repack/testfiles/h5repack_f32le.h5 +./tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 ./tools/test/h5repack/testfiles/h5repack_fill.h5 ./tools/test/h5repack/testfiles/h5repack_filters.h5 ./tools/test/h5repack/testfiles/h5repack_fletcher.h5 ./tools/test/h5repack/testfiles/h5repack_fsm_aggr_nopersist.h5 ./tools/test/h5repack/testfiles/h5repack_fsm_aggr_persist.h5 ./tools/test/h5repack/testfiles/h5repack_hlink.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat +./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_2d.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_3d.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5 ./tools/test/h5repack/testfiles/h5repack.info -./tools/test/h5repack/testfiles/h5repack_int32le.h5 -./tools/test/h5repack/testfiles/h5repack_int32le_ex-0.dat -./tools/test/h5repack/testfiles/h5repack_int32le_ex.h5 ./tools/test/h5repack/testfiles/h5repack_layout.h5 ./tools/test/h5repack/testfiles/h5repack_layouto.h5 ./tools/test/h5repack/testfiles/h5repack_layout2.h5 @@ -2584,10 +2594,6 @@ ./tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat ./tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat ./tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat -./tools/test/h5repack/testfiles/h5repack_uint8be_ex-4.dat -./tools/test/h5repack/testfiles/h5repack_uint8be_ex-5.dat -./tools/test/h5repack/testfiles/h5repack_uint8be_ex-6.dat -./tools/test/h5repack/testfiles/h5repack_uint8be_ex-7.dat ./tools/test/h5repack/testfiles/h5repack_uint8be_ex.h5 ./tools/test/h5repack/testfiles/ublock.bin ./tools/test/h5repack/testfiles/crtorder.tordergr.h5.ddl diff --git a/tools/test/h5repack/h5repack.sh.in b/tools/test/h5repack/h5repack.sh.in index 1af4fd0..1232b33 100644 --- a/tools/test/h5repack/h5repack.sh.in +++ b/tools/test/h5repack/h5repack.sh.in @@ -115,8 +115,14 @@ $SRC_H5REPACK_TESTFILES/h5repack_fsm_aggr_persist.h5 $SRC_H5REPACK_TESTFILES/h5repack_none.h5 $SRC_H5REPACK_TESTFILES/h5repack_paged_nopersist.h5 $SRC_H5REPACK_TESTFILES/h5repack_paged_persist.h5 -$SRC_H5REPACK_TESTFILES/h5repack_int32le.h5 -$SRC_H5REPACK_TESTFILES/h5repack_int32le_ex.h5 +$SRC_H5REPACK_TESTFILES/h5repack_f32le.h5 +$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex.h5 $SRC_H5REPACK_TESTFILES/h5repack_uint8be.h5 $SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex.h5 $SRC_H5DIFF_TESTFILES/h5diff_attr1.h5 @@ -164,7 +170,11 @@ $SRC_H5REPACK_TESTFILES/ublock.bin $SRC_H5REPACK_TESTFILES/h5repack.info $SRC_H5REPACK_TESTFILES/crtorder.tordergr.h5.ddl $SRC_H5REPACK_TESTFILES/deflate_limit.h5repack_layout.h5.ddl -$SRC_H5REPACK_TESTFILES/h5repack_int32le_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex-1.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex-0.dat $SRC_H5REPACK_TESTFILES/h5repack_layout.h5.ddl $SRC_H5REPACK_TESTFILES/h5repack_filters.h5-gzip_verbose_filters.tst $SRC_H5REPACK_TESTFILES/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst @@ -173,10 +183,6 @@ $SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-0.dat $SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-1.dat $SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-2.dat $SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-3.dat -$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-4.dat -$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-5.dat -$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-6.dat -$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-7.dat $SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst $SRC_H5REPACK_TESTFILES/1_vds.h5-vds_dset_chunk20x10x5-v.ddl $SRC_H5REPACK_TESTFILES/2_vds.h5-vds_chunk3x6x9-v.ddl @@ -647,7 +653,7 @@ DIFFFAIL() # ----------------------------------------------------------------------------- VERIFY_EXTERNAL_CONSOLIDATION() { - for name in int32le uint8be + for name in f32le int32le_1d int32le_2d int32le_3d uint8be do basename="h5repack_${name}" base_ext="${basename}_ex" @@ -672,7 +678,7 @@ VERIFY_EXTERNAL_CONSOLIDATION() DIFFTEST $repacked $canonical DIFFTEST $repacked $external - # invalidate external file by moving its data file; verify + # invalidate external file by moving its first data file; verify ( cd $TESTDIR mv $ex_dat $ex_dat_mv ) diff --git a/tools/test/h5repack/h5repackgentest.c b/tools/test/h5repack/h5repackgentest.c index 7242ebf..6e2c6bf 100644 --- a/tools/test/h5repack/h5repackgentest.c +++ b/tools/test/h5repack/h5repackgentest.c @@ -32,8 +32,11 @@ #include "H5private.h" #define MAX_NAME_SIZE 256 -#define FILE_INT32LE "h5repack_int32le" +#define FILE_INT32LE_1 "h5repack_int32le_1d" +#define FILE_INT32LE_2 "h5repack_int32le_2d" +#define FILE_INT32LE_3 "h5repack_int32le_3d" #define FILE_UINT8BE "h5repack_uint8be" +#define FILE_F32LE "h5repack_f32le" #define H5REPACKGENTEST_OOPS ret_value = -1; goto done; @@ -45,37 +48,43 @@ if ((space) != H5I_INVALID_HID) { (void)H5Sclose((space)); } \ } +struct external_def { + hsize_t type_size; + unsigned n_elts_per_file; + unsigned n_elts_total; +}; + /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - * Helper function to create and write a dataset to file. * Returns 0 on success, -1 on failure. */ static int -make_dataset( - hid_t file, +__make_dataset( + hid_t file_id, const char *dset_name, hid_t mem_type_id, - hid_t space, - hid_t dcpl, + hid_t space_id, + hid_t dcpl_id, void *wdata) { - hid_t dset = H5I_INVALID_HID; + hid_t dset_id = H5I_INVALID_HID; int ret_value = 0; - dset = H5Dcreate2( - file, - "dset", + dset_id = H5Dcreate2( + file_id, + dset_name, mem_type_id, - space, + space_id, H5P_DEFAULT, - dcpl, + dcpl_id, H5P_DEFAULT); - if (dset == H5I_INVALID_HID) { + if (dset_id == H5I_INVALID_HID) { H5REPACKGENTEST_OOPS; } if (H5Dwrite( - dset, + dset_id, mem_type_id, H5S_ALL, H5S_ALL, @@ -87,102 +96,116 @@ make_dataset( } done: - if (dset != H5I_INVALID_HID) { (void)H5Dclose(dset); } + if (dset_id != H5I_INVALID_HID) { (void)H5Dclose(dset_id); } return ret_value; -} /* end make_dataset() */ +} /* end __make_dataset() */ /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - * Helper function to populate the DCPL external storage list. + * Creates external files for the DCPL, with each file name following the + * convention "<filename>_ex-<num>.dat". Will append `n_external_files` to + * the filename list, with each file having space for `n_elts` items of the + * type (of size `elt_size`). The numeric inputs are not sanity-checked. * Returns 0 on success, -1 on failure. */ static int -set_dcpl_external_list( +__set_dcpl_external_list( hid_t dcpl, const char *filename, - hsize_t n_external_files, - hsize_t n_elts, - hsize_t elt_size) + unsigned n_elts_per_file, + unsigned n_elts_total, + hsize_t elt_size) { - hsize_t i = 0; - char name[MAX_NAME_SIZE]; + char name[MAX_NAME_SIZE]; + unsigned n_external_files = 0; + unsigned i = 0; + + if (NULL == filename || '\0' == *filename) { + return -1; + } + + n_external_files = n_elts_total / n_elts_per_file; + if (n_elts_total != (n_external_files * n_elts_per_file)) { + return -1; + } for (i = 0; i < n_external_files; i++) { - snprintf(name, MAX_NAME_SIZE, "%s_ex-%llu.dat", filename, i); - if (H5Pset_external(dcpl, name, 0, n_elts * elt_size) < 0) { + if (snprintf(name, MAX_NAME_SIZE, "%s_ex-%u.dat", filename, i) >= MAX_NAME_SIZE) { + return -1; + } + if (H5Pset_external(dcpl, name, 0, n_elts_per_file * elt_size) < 0) { return -1; } } return 0; -} /* end set_dcpl_external_list() */ +} /* end __set_dcpl_external_list() */ /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Generalized utility function to write a file with the specified data and + * dataset configuration. If `ext` is provided, will attempt to use external + * storage. + * Returns 0 on success, -1 on failure. */ static int -generate_int32le(hbool_t external) +__make_file( + const char *basename, + struct external_def *ext, + hid_t type_id, + hsize_t rank, + hsize_t *dims, + void *wdata) { char filename[MAX_NAME_SIZE]; - hid_t file = H5I_INVALID_HID; - hid_t dcpl = H5P_DEFAULT; - hid_t space = H5I_INVALID_HID; - hsize_t dims[] = {8, 8, 8}; - int32_t wdata[512]; /* 8^3, from dims */ - int32_t n = 0; - int i = 0; - int j = 0; - int k = 0; + hid_t file_id = H5I_INVALID_HID; + hid_t dcpl_id = H5P_DEFAULT; + hid_t space_id = H5I_INVALID_HID; int ret_value = 0; - /* generate values, alternating positive and negative - */ - for (i=0, n=0; i < 8; i++) { - for (j=0; j < 8; j++) { - for (k=0; k < 8; k++, n++) { - wdata[n] = (k + j*512 + i*4096) * ((n&1) ? (-1) : (1)); - } - } - } - - snprintf(filename, + if (snprintf(filename, MAX_NAME_SIZE, "%s%s.h5", - FILE_INT32LE, - (external) ? "_ex" : ""); + basename, + (NULL != ext) ? "_ex" : "") + >= MAX_NAME_SIZE) + { + H5REPACKGENTEST_OOPS; + } - if (external) { - dcpl = H5Pcreate(H5P_DATASET_CREATE); - if (dcpl == H5I_INVALID_HID) { + if (NULL != ext) { + dcpl_id = H5Pcreate(H5P_DATASET_CREATE); + if (dcpl_id == H5I_INVALID_HID) { H5REPACKGENTEST_OOPS; } - if (set_dcpl_external_list( - dcpl, - FILE_INT32LE, - 1, - 512, - sizeof(int32_t)) + if (__set_dcpl_external_list( + dcpl_id, + basename, + ext->n_elts_per_file, + ext->n_elts_total, + ext->type_size) < 0) { H5REPACKGENTEST_OOPS; } } - space = H5Screate_simple(3, dims, NULL); - if (space == H5I_INVALID_HID) { + space_id = H5Screate_simple(rank, dims, NULL); + if (space_id == H5I_INVALID_HID) { H5REPACKGENTEST_OOPS; } - file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (file == H5I_INVALID_HID) { + file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (file_id == H5I_INVALID_HID) { H5REPACKGENTEST_OOPS; } - if (make_dataset( - file, + if (__make_dataset( + file_id, "dset", - H5T_STD_I32LE, - space, - dcpl, + type_id, + space_id, + dcpl_id, wdata) < 0) { @@ -190,106 +213,194 @@ generate_int32le(hbool_t external) } done: - H5REPACKGENTEST_COMMON_CLEANUP(dcpl, file, space); + H5REPACKGENTEST_COMMON_CLEANUP(dcpl_id, file_id, space_id); return ret_value; -} /* end generate_int32le() */ +} /* end __make_file() */ /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. */ static int -generate_uint8be(hbool_t external) +generate_int32le_1d(hbool_t external) { - char filename[MAX_NAME_SIZE]; - hid_t file = H5I_INVALID_HID; - hid_t dcpl = H5P_DEFAULT; - hid_t space = H5I_INVALID_HID; - hsize_t dims[] = {8, 8, 8}; - uint8_t wdata[512]; /* 8^3, from dims */ - uint8_t n = 0; + int32_t wdata[12]; + hsize_t dims[] = {12}; + struct external_def *def_ptr = NULL; + struct external_def def = { (hsize_t)sizeof(int32_t), 6, 12 }; + int32_t n = 0; + int ret_value = 0; + + /* Generate values + */ + for (n = 0; n < 12; n++) { + wdata[n] = n-6; + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (__make_file(FILE_INT32LE_1, def_ptr, H5T_STD_I32LE, 1, dims, wdata) < 0) { + ret_value = -1; + } + + return ret_value; +} /* end generate_int32le_1d() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_int32le_2d(hbool_t external) +{ + int32_t wdata[64]; + hsize_t dims[] = {8, 8}; + struct external_def *def_ptr = NULL; + struct external_def def = { (hsize_t)sizeof(int32_t), 64, 64 }; + int32_t n = 0; + int ret_value = 0; + + /* Generate values + */ + for (n = 0; n < 64; n++) { + wdata[n] = n-32; + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (__make_file(FILE_INT32LE_2, def_ptr, H5T_STD_I32LE, 2, dims, wdata) < 0) { + ret_value = -1; + } + + return ret_value; +} /* end generate_int32le_2d() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_int32le_3d(hbool_t external) +{ + hsize_t dims[] = {8, 8, 8}; + int32_t wdata[512]; /* 8^3, from dims */ + struct external_def *def_ptr = NULL; + struct external_def def = { (hsize_t)sizeof(int32_t), 512, 512 }; + int32_t n = 0; int i = 0; int j = 0; int k = 0; int ret_value = 0; - /* Generate values, alternating positive and negative - * The latter half of the dataset is "overflow garbage" (TODO?) + /* generate values, alternating positive and negative */ - for (i=0, n=0; i < 8; i++) { - for (j=0; j < 8; j++) { - for (k=0; k < 8; k++, n++) { - wdata[n] = n * ((n&1) ? (-1) : (1)); + for (i=0, n=0; i < dims[0]; i++) { + for (j=0; j < dims[1]; j++) { + for (k=0; k < dims[2]; k++, n++) { + wdata[n] = (k + j*512 + i*4096) * ((n&1) ? (-1) : (1)); } } } - snprintf(filename, - MAX_NAME_SIZE, - "%s%s.h5", - FILE_UINT8BE, - (external) ? "_ex" : ""); + def_ptr = (TRUE == external) ? (&def) : NULL; + if (__make_file(FILE_INT32LE_3, def_ptr, H5T_STD_I32LE, 3, dims, wdata) < 0) { + ret_value = -1; + } - if (external) { - dcpl = H5Pcreate(H5P_DATASET_CREATE); - if (dcpl == H5I_INVALID_HID) { - H5REPACKGENTEST_OOPS; - } - if (set_dcpl_external_list( - dcpl, - FILE_UINT8BE, - 8, - 64, - sizeof(uint8_t)) - < 0) - { - H5REPACKGENTEST_OOPS; + return ret_value; +} /* end generate_int32le_3d() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_uint8be(hbool_t external) +{ + hsize_t dims[] = {4, 8, 8}; + uint8_t wdata[256]; /* 4*8*8, from dims */ + struct external_def *def_ptr = NULL; + struct external_def def = { (hsize_t)sizeof(uint8_t), 64, 256 }; + uint8_t n = 0; + int i = 0; + int j = 0; + int k = 0; + int ret_value = 0; + + /* Generate values, ping-pong from ends of range + */ + for (i=0, n=0; i < dims[0]; i++) { + for (j=0; j < dims[1]; j++) { + for (k=0; k < dims[2]; k++, n++) { + wdata[n] = n * ((n&1) ? (-1) : (1)); + } } } - space = H5Screate_simple(3, dims, NULL); - if (space == H5I_INVALID_HID) { - H5REPACKGENTEST_OOPS; + def_ptr = (TRUE == external) ? (&def) : NULL; + if (__make_file(FILE_UINT8BE, def_ptr, H5T_STD_U8BE, 3, dims, wdata) < 0) { + ret_value = -1; } - file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (file == H5I_INVALID_HID) { - H5REPACKGENTEST_OOPS; + return ret_value; +} /* end generate_uint8be() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_f32le(hbool_t external) +{ + hsize_t dims[] = {12, 6}; + float wdata[72]; /* 12*6, from dims */ + struct external_def *def_ptr = NULL; + struct external_def def = { + (hsize_t)sizeof(float), + 72, + 72 + }; + float n = 0; + int i = 0; + int j = 0; + int k = 0; + int ret_value = 0; + + /* Generate values */ + for (i=0, k=0, n=0; i < dims[0]; i++) { + for (j=0; j < dims[1]; j++, k++, n++) { + wdata[k] = n * 801.1 * ((k % 5 == 1) ? (-1) : (1)); + } } - if (make_dataset( - file, - "dset", - H5T_STD_U8BE, - space, - dcpl, - wdata) - < 0) - { - H5REPACKGENTEST_OOPS; + def_ptr = (TRUE == external) ? (&def) : NULL; + if (__make_file(FILE_F32LE, def_ptr, H5T_IEEE_F32LE, 2, dims, wdata) < 0) { + ret_value = -1; } -done: - H5REPACKGENTEST_COMMON_CLEANUP(dcpl, file, space); return ret_value; -} /* end generate_uint8be() */ +} /* end generate_f32le() */ /* ---------------------------------------------------------------------------- + * Create files. + * Return 0 on success, nonzero on failure. */ int main(void) { - int i = 0; /* loop variable */ + int i = 0; int ret_value = 0; for (i=0; i < 2; i++) { hbool_t external = (i&1) ? TRUE : FALSE; - if (ret_value == 0) { ret_value -= generate_int32le(external); } + if (ret_value == 0) { ret_value -= generate_int32le_1d(external); } + if (ret_value == 0) { ret_value -= generate_int32le_2d(external); } + if (ret_value == 0) { ret_value -= generate_int32le_3d(external); } if (ret_value == 0) { ret_value -= generate_uint8be(external); } + if (ret_value == 0) { ret_value -= generate_f32le(external); } } /* end for external data storage or not */ if (ret_value != 0) { - /* TODO: print warning message? */ + HDprintf("A problem occurred!\n"); } return ret_value; diff --git a/tools/test/h5repack/testfiles/h5repack_f32le.h5 b/tools/test/h5repack/testfiles/h5repack_f32le.h5 Binary files differnew file mode 100644 index 0000000..03a9b57 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_f32le.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat Binary files differnew file mode 100644 index 0000000..8378fc2 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat diff --git a/tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 b/tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 Binary files differnew file mode 100644 index 0000000..ca6c49d --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 Binary files differnew file mode 100644 index 0000000..7d60566 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat new file mode 100644 index 0000000..f75ada5 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat @@ -0,0 +1 @@ +úÿÿÿûÿÿÿüÿÿÿýÿÿÿþÿÿÿÿÿÿÿ
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