diff options
413 files changed, 18360 insertions, 8025 deletions
diff --git a/.gitattributes b/.gitattributes index 1ca4739..2ad5b6e 100644 --- a/.gitattributes +++ b/.gitattributes @@ -216,10 +216,10 @@ java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java -text java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java -text java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java -text java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java -text -java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java -text java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java -text -java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java -text +java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java -text java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java -text +java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java -text java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java -text java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java -text java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java -text @@ -267,6 +267,8 @@ java/src/hdf/hdf5lib/structs/H5G_info_t.java -text java/src/hdf/hdf5lib/structs/H5L_info_t.java -text java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java -text java/src/hdf/hdf5lib/structs/H5O_info_t.java -text +java/src/hdf/hdf5lib/structs/H5O_native_info_t.java -text +java/src/hdf/hdf5lib/structs/H5O_token_t.java -text java/src/hdf/hdf5lib/structs/H5_ih_info_t.java -text java/src/hdf/overview.html -text java/src/jni/CMakeLists.txt -text diff --git a/CMakeLists.txt b/CMakeLists.txt index 63c36b0..1466865 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -435,17 +435,29 @@ endif () #----------------------------------------------------------------------------- # Option to Build Shared and Static libs, default is both #----------------------------------------------------------------------------- -option (ONLY_SHARED_LIBS "Only Build Shared Libraries" OFF) -set (H5_ENABLE_STATIC_LIB YES) -if (ONLY_SHARED_LIBS) - set (H5_ENABLE_STATIC_LIB NO) - set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries") -endif () +option (BUILD_STATIC_LIBS "Build Static Libraries" ON) +set (H5_ENABLE_STATIC_LIB NO) option (BUILD_SHARED_LIBS "Build Shared Libraries" ON) set (H5_ENABLE_SHARED_LIB NO) +option (ONLY_SHARED_LIBS "Only Build Shared Libraries" OFF) + +if (BUILD_STATIC_LIBS) + set (H5_ENABLE_STATIC_LIB YES) +endif () if (BUILD_SHARED_LIBS) set (H5_ENABLE_SHARED_LIB YES) endif () + +# Force only shared libraries if all OFF +if (NOT BUILD_STATIC_LIBS AND NOT BUILD_SHARED_LIBS) + set (ONLY_SHARED_LIBS ON CACHE BOOL "Only Build Shared Libraries" FORCE) +endif () + +if (ONLY_SHARED_LIBS) + set (H5_ENABLE_STATIC_LIB NO) + set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries") +endif () + set (CMAKE_POSITION_INDEPENDENT_CODE ON) #----------------------------------------------------------------------------- @@ -860,6 +872,30 @@ if (BUILD_TESTING) include (${HDF5_SOURCE_DIR}/CTestConfig.cmake) configure_file (${HDF_RESOURCES_DIR}/CTestCustom.cmake ${HDF5_BINARY_DIR}/CTestCustom.ctest @ONLY) + option (HDF5_TEST_SERIAL "Execute non-parallel tests" ON) + mark_as_advanced (HDF5_TEST_SERIAL) + + option (HDF5_TEST_TOOLS "Execute tools tests" ON) + mark_as_advanced (HDF5_TEST_TOOLS) + + option (HDF5_TEST_EXAMPLES "Execute tests on examples" ON) + mark_as_advanced (HDF5_TEST_EXAMPLES) + + option (HDF5_TEST_SWMR "Execute SWMR tests" ON) + mark_as_advanced (HDF5_TEST_SWMR) + + option (HDF5_TEST_PARALLEL "Execute parallel tests" ON) + mark_as_advanced (HDF5_TEST_PARALLEL) + + option (HDF5_TEST_FORTRAN "Execute fortran tests" ON) + mark_as_advanced (HDF5_TEST_FORTRAN) + + option (HDF5_TEST_CPP "Execute cpp tests" ON) + mark_as_advanced (HDF5_TEST_CPP) + + option (HDF5_TEST_JAVA "Execute java tests" ON) + mark_as_advanced (HDF5_TEST_JAVA) + if (NOT HDF5_EXTERNALLY_CONFIGURED) if (EXISTS "${HDF5_SOURCE_DIR}/test" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/test") add_subdirectory (test) @@ -132,6 +132,7 @@ ./config/intel-flags ./config/linux-gnu ./config/linux-gnuaout +./config/linux-gnueabihf ./config/linux-gnulibc1 ./config/linux-gnulibc2 ./config/lt_vers.am @@ -748,6 +749,7 @@ ./src/H5Ipublic.h ./src/H5Itest.c ./src/H5L.c +./src/H5Ldeprec.c ./src/H5Lexternal.c ./src/H5Lmodule.h ./src/H5Lpkg.h @@ -938,6 +940,7 @@ ./src/H5VLnative_link.c ./src/H5VLnative_introspect.c ./src/H5VLnative_object.c +./src/H5VLnative_token.c ./src/H5VLnative_private.h ./src/H5VLpassthru.c ./src/H5VLpassthru.h @@ -1184,6 +1187,7 @@ ./test/ttime.c ./test/trefer.c ./test/trefer_deprec.c +./test/trefer_shutdown.c ./test/trefstr.c ./test/tselect.c ./test/tsizeslheap.h5 @@ -3043,10 +3047,10 @@ ./java/src/hdf/hdf5lib/callbacks/H5D_append_t.java ./java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java ./java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java -./java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java ./java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java -./java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java +./java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java ./java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java +./java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java ./java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java ./java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java ./java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java @@ -3099,6 +3103,8 @@ ./java/src/hdf/hdf5lib/structs/H5L_info_t.java ./java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java ./java/src/hdf/hdf5lib/structs/H5O_info_t.java +./java/src/hdf/hdf5lib/structs/H5O_native_info_t.java +./java/src/hdf/hdf5lib/structs/H5O_token_t.java ./java/src/hdf/hdf5lib/H5.java ./java/src/hdf/hdf5lib/HDF5Constants.java diff --git a/bin/h5cc.in b/bin/h5cc.in index 9c4e3ca..d6b7a12 100644 --- a/bin/h5cc.in +++ b/bin/h5cc.in @@ -121,13 +121,6 @@ usage() { echo " -echo Show all the shell commands executed" echo " -prefix=DIR Prefix directory to find HDF5 lib/ and include/" echo " subdirectories [default: $prefix]" - # A wonderfully informative "usage" message. - echo "usage: $prog_name [OPTIONS] <compile line>" - echo " OPTIONS:" - echo " -help This help message." - echo " -echo Show all the shell commands executed" - echo " -prefix=DIR Prefix directory to find HDF5 lib/ and include/" - echo " subdirectories [default: $prefix]" echo " -show Show the commands without executing them" echo " -showconfig Show the HDF5 library configuration summary" echo " -shlib Compile with shared HDF5 libraries [default for hdf5 built" diff --git a/bin/make_vers b/bin/make_vers index c6d2c04..74b0ae2 100755 --- a/bin/make_vers +++ b/bin/make_vers @@ -90,7 +90,8 @@ sub print_checkoptions ($) { my $curr_idx; # Current API version index # Print the option checking - print $fh "\n/* Issue error if contradicting macros have been defined. */\n"; + print $fh "\n\n/* Issue error if contradicting macros have been defined. */\n"; + print $fh "/* (Can't use an older (deprecated) API version if deprecated symbols have been disabled) */\n"; # Print the #ifdef print $fh "#if ("; @@ -119,26 +120,40 @@ sub print_checkoptions ($) { ############################################################################## # Print "global" API version macro settings # -sub print_globalapivers ($) { +sub print_globalapidefvers ($) { my $fh = shift; # File handle for output file my $curr_idx; # Current API version index # Print the descriptive comment - print $fh "\n\n/* If a particular \"global\" version of the library's interfaces is chosen,\n"; - print $fh " * set the versions for the API symbols affected.\n"; + print $fh "\n\n/* If a particular default \"global\" version of the library's interfaces is\n"; + print $fh " * chosen, set the corresponding version macro for API symbols.\n"; print $fh " *\n"; - print $fh " * Note: If an application has already chosen a particular version for an\n"; - print $fh " * API symbol, the individual API version macro takes priority.\n"; print $fh " */\n"; for $curr_idx ($min_sup_idx .. ($max_idx - 1)) { # Print API version ifdef - print $fh "#if defined(H5_USE_1", ($curr_idx * 2), "_API_DEFAULT) && !defined(H5_USE_1", ($curr_idx * 2), "_API)\n"; + print $fh "\n#if defined(H5_USE_1", ($curr_idx * 2), "_API_DEFAULT) && !defined(H5_USE_1", ($curr_idx * 2), "_API)\n"; # Print API version definition print $fh " " x $indent, "#define H5_USE_1", ($curr_idx * 2), "_API 1\n"; # Print API version endif - print $fh "#endif /* H5_USE_1", ($curr_idx * 2), "_API_DEFAULT && !H5_USE_1", ($curr_idx * 2), "_API */\n\n"; + print $fh "#endif /* H5_USE_1", ($curr_idx * 2), "_API_DEFAULT && !H5_USE_1", ($curr_idx * 2), "_API */\n"; } +} + +############################################################################## +# Print "global" API symbol version macro settings +# +sub print_globalapisymbolvers ($) { + my $fh = shift; # File handle for output file + my $curr_idx; # Current API version index + + # Print the descriptive comment + print $fh "\n\n/* If a particular \"global\" version of the library's interfaces is chosen,\n"; + print $fh " * set the versions for the API symbols affected.\n"; + print $fh " *\n"; + print $fh " * Note: If an application has already chosen a particular version for an\n"; + print $fh " * API symbol, the individual API version macro takes priority.\n"; + print $fh " */\n"; # Loop over supported older library APIs and define the appropriate macros for $curr_idx ($min_sup_idx .. ($max_idx - 1)) { @@ -339,7 +354,18 @@ sub parse_line ($) { my $vers_idx; # Index of version in array # Do some validation on the input - if(!( $_ =~ /v1[02468]/ || $_ =~ /v11[02468]/ )) { + # Note: v111 is allowed because H5O functions were prematurely versioned + # in HDF5 1.10. Because users were affected by this, the versioning + # was rescinded but the H5O version 2 functions were kept to be + # called directly. Now that the version macros are added in 1.12, + # along with a 3rd version of the H5O functions, the H5O function + # version for default api=v110 should be version 1 to work correctly + # with 1.10 applications that were using unversioned H5O functions, + # and the H5O function version should be version 3 for default api=v112 + # (the default api version for 1.12). Allowing a v111 entry and + # incrementing its index 13 lines below allows a version 2 that is + # never accessed via the H5O function macros. + if(!( $_ =~ /v1[02468]/ || $_ =~ /v11[02468]/ || $_ =~ /v111/ )) { die "bad version information: $name"; } if(exists($sym_versions{$_})) { @@ -352,6 +378,9 @@ sub parse_line ($) { #print "parse_line: _=$_\n"; # Get the index of the version ($vers_idx) = ($_ =~ /v1(\d+)/); + if($vers_idx == 11) { + $vers_idx++; + } $vers_idx /= 2; #print "parse_line: vers_idx='$vers_idx'\n"; push(@vers_nums, $vers_idx); @@ -444,8 +473,9 @@ sub create_public ($) { print_copyright(*HEADER); print_warning(*HEADER); print_startprotect(*HEADER, $file); + print_globalapidefvers(*HEADER); print_checkoptions(*HEADER); - print_globalapivers(*HEADER); + print_globalapisymbolvers(*HEADER); print_defaultapivers(*HEADER); print_endprotect(*HEADER, $file); @@ -71,6 +71,7 @@ $Source = ""; "uint32_t" => "Iu", "uint64_t" => "UL", "H5I_type_t" => "It", + "H5O_token_t" => "k", "H5G_link_t" => "Ll", #Same as H5L_type_t now "H5L_type_t" => "Ll", "MPI_Comm" => "Mc", @@ -164,12 +165,18 @@ $Source = ""; "H5I_search_func_t" => "x", "H5L_class_t" => "x", "H5L_elink_traverse_t" => "x", - "H5L_iterate_t" => "x", + "H5L_info1_t" => "x", + "H5L_info2_t" => "x", + "H5L_iterate1_t" => "x", + "H5L_iterate2_t" => "x", "H5M_iterate_t" => 'x', "H5MM_allocate_t" => "x", "H5MM_free_t" => "x", - "H5O_info_t" => "x", - "H5O_iterate_t" => "x", + "H5O_info1_t" => "x", + "H5O_info2_t" => "x", + "H5O_native_info_t" => "x", + "H5O_iterate1_t" => "x", + "H5O_iterate2_t" => "x", "H5O_mcdt_search_cb_t" => "x", "H5P_cls_create_func_t" => "x", "H5P_cls_copy_func_t" => "x", @@ -232,6 +239,7 @@ sub argstring ($$$) { # certain type qualifiers, and indirection. $atype =~ s/^\bconst\b//; $atype =~ s/\bH5_ATTR_UNUSED\b//g; + $atype =~ s/\bH5_ATTR_NDEBUG_UNUSED\b//g; $atype =~ s/\s+/ /g; $ptr = length $1 if $atype =~ s/(\*+)//; $atype =~ s/^\s+//; diff --git a/c++/examples/CMakeLists.txt b/c++/examples/CMakeLists.txt index 58d85c1..89d62f1 100644 --- a/c++/examples/CMakeLists.txt +++ b/c++/examples/CMakeLists.txt @@ -68,6 +68,6 @@ foreach (example ${tutr_examples}) set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp) endforeach () -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_CPP AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL) include (CMakeTests.cmake) endif () diff --git a/c++/examples/h5group.cpp b/c++/examples/h5group.cpp index fab54cd..271c538 100644 --- a/c++/examples/h5group.cpp +++ b/c++/examples/h5group.cpp @@ -36,7 +36,7 @@ const H5std_string FILE_NAME( "Group.h5" ); const int RANK = 2; // Operator function -extern "C" herr_t file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, +extern "C" herr_t file_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *opdata); int main(void) @@ -157,7 +157,7 @@ int main(void) * root directory. */ cout << endl << "Iterating over elements in the file" << endl; - herr_t idx = H5Literate(file->getId(), H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL); + herr_t idx = H5Literate2(file->getId(), H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL); cout << endl; /* @@ -175,7 +175,7 @@ int main(void) cout << "\"Data\" is unlinked" << endl; cout << endl << "Iterating over elements in the file again" << endl; - idx = H5Literate(file->getId(), H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL); + idx = H5Literate2(file->getId(), H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL); cout << endl; /* @@ -219,7 +219,7 @@ int main(void) * Operator function. */ herr_t -file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *opdata) +file_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *opdata) { hid_t group; diff --git a/c++/src/C2Cppfunction_map.htm b/c++/src/C2Cppfunction_map.htm index 2d779a3..a9e0a27 100644 --- a/c++/src/C2Cppfunction_map.htm +++ b/c++/src/C2Cppfunction_map.htm @@ -11493,7 +11493,7 @@ normal'><span style='font-size:14.0pt;mso-bidi-font-size:11.0pt;line-height: mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: - normal'>H5L_info_t getLinkInfo(const char* link_name,</p> + normal'>H5L_info2_t getLinkInfo(const char* link_name,</p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><span style='mso-tab-count:1'> </span>const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)</p> @@ -11526,7 +11526,7 @@ normal'><span style='font-size:14.0pt;mso-bidi-font-size:11.0pt;line-height: mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: - normal'>H5L_info_t getLinkInfo(const H5std_string& link_name,</p> + normal'>H5L_info2_t getLinkInfo(const H5std_string& link_name,</p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><span style='mso-tab-count:1'> </span>const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)</p> diff --git a/c++/src/H5Location.cpp b/c++/src/H5Location.cpp index 2641960..764aa12 100644 --- a/c++/src/H5Location.cpp +++ b/c++/src/H5Location.cpp @@ -1404,6 +1404,121 @@ void H5Location::unlink(const H5std_string& name, const LinkAccPropList& lapl) c } //-------------------------------------------------------------------------- +// Function: H5Location::getNativeObjinfo +///\brief Retrieves native information about an HDF5 object. +///\param objinfo - OUT: Struct containing the native object info +///\param fields - IN: Indicates the group of information to be retrieved +///\par Description +/// Valid values of \a fields are as follows: +/// \li \c H5O_INFO_HDR (default) +/// \li \c H5O_INFO_META_SIZE +/// \li \c H5O_INFO_ALL +// July, 2018 +//-------------------------------------------------------------------------- +void H5Location::getNativeObjinfo(H5O_native_info_t& objinfo, unsigned fields) const +{ + + // Use C API to get information of the object + herr_t ret_value = H5Oget_native_info(getId(), &objinfo, fields); + + // Throw exception if C API returns failure + if (ret_value < 0) + throwException(inMemFunc("getNativeObjinfo"), "H5Oget_native_info failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::getNativeObjinfo +///\brief Retrieves native information about an HDF5 object given its name. +///\param name - IN: Name of the object to be queried - \c char * +///\param objinfo - OUT: Struct containing the native object info +///\param fields - IN: Indicates the group of information to be retrieved +/// - default to H5O_INFO_HDR +///\param lapl - IN: Link access property list +///\par Description +/// Valid values of \a fields are as follows: +/// \li \c H5O_INFO_HDR (default) +/// \li \c H5O_INFO_META_SIZE +/// \li \c H5O_INFO_ALL +// July, 2018 +//-------------------------------------------------------------------------- +void H5Location::getNativeObjinfo(const char* name, H5O_native_info_t& objinfo, unsigned fields, const LinkAccPropList& lapl) const +{ + // Use C API to get information of the object + herr_t ret_value = H5Oget_native_info_by_name(getId(), name, &objinfo, fields, lapl.getId()); + + // Throw exception if C API returns failure + if (ret_value < 0) + throwException(inMemFunc("getNativeObjinfo"), "H5Oget_native_info_by_name failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::getNativeObjinfo +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes +/// a reference to an \c H5std_string for \a name. +///\param name - IN: Name of the object to be queried - \c H5std_string +///\param objinfo - OUT: Struct containing the native object info +///\param fields - IN: Indicates the group of information to be retrieved +/// - default to H5O_INFO_HDR +///\param lapl - IN: Link access property list +// July, 2018 +//-------------------------------------------------------------------------- +void H5Location::getNativeObjinfo(const H5std_string& name, H5O_native_info_t& objinfo, unsigned fields, const LinkAccPropList& lapl) const +{ + getNativeObjinfo(name.c_str(), objinfo, fields, lapl); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::getNativeObjinfo +///\brief Retrieves native information about an HDF5 object given its index. +///\param grp_name - IN: Group name where the object belongs - \c char * +///\param idx_type - IN: Type of index +///\param order - IN: Order to traverse +///\param idx - IN: Object position +///\param objinfo - OUT: Struct containing the native object info +///\param fields - IN: Indicates the group of information to be retrieved +/// - default to H5O_INFO_HDR +///\param lapl - IN: Link access property list +///\par Description +/// Valid values of \a fields are as follows: +/// \li \c H5O_INFO_HDR (default) +/// \li \c H5O_INFO_META_SIZE +/// \li \c H5O_INFO_ALL +// July, 2018 +//-------------------------------------------------------------------------- +void H5Location::getNativeObjinfo(const char* grp_name, H5_index_t idx_type, + H5_iter_order_t order, hsize_t idx, H5O_native_info_t& objinfo, unsigned fields, + const LinkAccPropList& lapl) const +{ + // Use C API to get information of the object + herr_t ret_value = H5Oget_native_info_by_idx(getId(), grp_name, idx_type, order, + idx, &objinfo, fields, lapl.getId()); + + // Throw exception if C API returns failure + if (ret_value < 0) + throwException(inMemFunc("getNativeObjinfo"), "H5Oget_native_info_by_idx failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::getObjinfo +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes +/// a reference to an \c H5std_string for \a name. +///\param name - IN: Name of the object to be queried - \c H5std_string +///\param objinfo - OUT: Struct containing the native object info +///\param fields - IN: Indicates a group of information to be retrieved +/// - default to H5O_INFO_HDR +///\param lapl - IN: Link access property list +// July, 2018 +//-------------------------------------------------------------------------- +void H5Location::getNativeObjinfo(const H5std_string& grp_name, H5_index_t idx_type, + H5_iter_order_t order, hsize_t idx, H5O_native_info_t& objinfo, unsigned fields, + const LinkAccPropList& lapl) const +{ + getNativeObjinfo(grp_name.c_str(), idx_type, order, idx, objinfo, fields, lapl); +} + +//-------------------------------------------------------------------------- // Function: H5Location::getObjinfo ///\brief Retrieves information about an HDF5 object. ///\param objinfo - OUT: Struct containing the object info @@ -1418,15 +1533,15 @@ void H5Location::unlink(const H5std_string& name, const LinkAccPropList& lapl) c /// \li \c H5O_INFO_ALL // July, 2018 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(H5O_info_t& objinfo, unsigned fields) const +void H5Location::getObjinfo(H5O_info2_t& objinfo, unsigned fields) const { // Use C API to get information of the object - herr_t ret_value = H5Oget_info2(getId(), &objinfo, fields); + herr_t ret_value = H5Oget_info3(getId(), &objinfo, fields); // Throw exception if C API returns failure if (ret_value < 0) - throwException(inMemFunc("getObjinfo"), "H5Oget_info2 failed"); + throwException(inMemFunc("getObjinfo"), "H5Oget_info3 failed"); } //-------------------------------------------------------------------------- @@ -1447,10 +1562,10 @@ void H5Location::getObjinfo(H5O_info_t& objinfo, unsigned fields) const /// \li \c H5O_INFO_ALL // July, 2018 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(const char* name, H5O_info_t& objinfo, unsigned fields, const LinkAccPropList& lapl) const +void H5Location::getObjinfo(const char* name, H5O_info2_t& objinfo, unsigned fields, const LinkAccPropList& lapl) const { // Use C API to get information of the object - herr_t ret_value = H5Oget_info_by_name2(getId(), name, &objinfo, fields, lapl.getId()); + herr_t ret_value = H5Oget_info_by_name3(getId(), name, &objinfo, fields, lapl.getId()); // Throw exception if C API returns failure if (ret_value < 0) @@ -1469,7 +1584,7 @@ void H5Location::getObjinfo(const char* name, H5O_info_t& objinfo, unsigned fiel ///\param lapl - IN: Link access property list // July, 2018 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(const H5std_string& name, H5O_info_t& objinfo, unsigned fields, const LinkAccPropList& lapl) const +void H5Location::getObjinfo(const H5std_string& name, H5O_info2_t& objinfo, unsigned fields, const LinkAccPropList& lapl) const { getObjinfo(name.c_str(), objinfo, fields, lapl); } @@ -1496,11 +1611,11 @@ void H5Location::getObjinfo(const H5std_string& name, H5O_info_t& objinfo, unsig // July, 2018 //-------------------------------------------------------------------------- void H5Location::getObjinfo(const char* grp_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields, + H5_iter_order_t order, hsize_t idx, H5O_info2_t& objinfo, unsigned fields, const LinkAccPropList& lapl) const { // Use C API to get information of the object - herr_t ret_value = H5Oget_info_by_idx2(getId(), grp_name, idx_type, order, + herr_t ret_value = H5Oget_info_by_idx3(getId(), grp_name, idx_type, order, idx, &objinfo, fields, lapl.getId()); // Throw exception if C API returns failure @@ -1521,7 +1636,7 @@ void H5Location::getObjinfo(const char* grp_name, H5_index_t idx_type, // July, 2018 //-------------------------------------------------------------------------- void H5Location::getObjinfo(const H5std_string& grp_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields, + H5_iter_order_t order, hsize_t idx, H5O_info2_t& objinfo, unsigned fields, const LinkAccPropList& lapl) const { getObjinfo(grp_name.c_str(), idx_type, order, idx, objinfo, fields, lapl); @@ -1596,11 +1711,11 @@ void H5Location::getObjinfo(const H5std_string& name, H5G_stat_t& statbuf) const ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // 2000 //-------------------------------------------------------------------------- -H5L_info_t H5Location::getLinkInfo(const char* link_name, const LinkAccPropList& lapl) const +H5L_info2_t H5Location::getLinkInfo(const char* link_name, const LinkAccPropList& lapl) const { - H5L_info_t linkinfo; // link info structure + H5L_info2_t linkinfo; // link info structure - herr_t ret_value = H5Lget_info(getId(), link_name, &linkinfo, lapl.getId()); + herr_t ret_value = H5Lget_info2(getId(), link_name, &linkinfo, lapl.getId()); if (ret_value < 0) throwException("getLinkInfo", "H5Lget_info to find buffer size failed"); @@ -1613,7 +1728,7 @@ H5L_info_t H5Location::getLinkInfo(const char* link_name, const LinkAccPropList& /// It differs from the above function in that it takes an /// \c H5std_string for \a link_name. //-------------------------------------------------------------------------- -H5L_info_t H5Location::getLinkInfo(const H5std_string& link_name, const LinkAccPropList& lapl) const +H5L_info2_t H5Location::getLinkInfo(const H5std_string& link_name, const LinkAccPropList& lapl) const { return(getLinkInfo(link_name.c_str(), lapl)); } @@ -1629,7 +1744,7 @@ H5L_info_t H5Location::getLinkInfo(const H5std_string& link_name, const LinkAccP //-------------------------------------------------------------------------- H5std_string H5Location::getLinkval(const char* name, size_t size) const { - H5L_info_t linkinfo; + H5L_info2_t linkinfo; char *value_C; // value in C string size_t val_size = size; H5std_string value = ""; @@ -1638,7 +1753,7 @@ H5std_string H5Location::getLinkval(const char* name, size_t size) const // if user doesn't provide buffer size, determine it if (size == 0) { - ret_value = H5Lget_info(getId(), name, &linkinfo, H5P_DEFAULT); + ret_value = H5Lget_info2(getId(), name, &linkinfo, H5P_DEFAULT); if (ret_value < 0) throwException("getLinkval", "H5Lget_info to find buffer size failed"); @@ -1941,11 +2056,11 @@ ssize_t H5Location::getObjnameByIdx(hsize_t idx, H5std_string& name, size_t size //-------------------------------------------------------------------------- H5O_type_t H5Location::childObjType(const char* objname) const { - H5O_info_t objinfo; + H5O_info2_t objinfo; H5O_type_t objtype = H5O_TYPE_UNKNOWN; // Use C API to get information of the object - herr_t ret_value = H5Oget_info_by_name2(getId(), objname, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT); + herr_t ret_value = H5Oget_info_by_name3(getId(), objname, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT); // Throw exception if C API returns failure if (ret_value < 0) @@ -2016,11 +2131,11 @@ H5O_type_t H5Location::childObjType(const H5std_string& objname) const H5O_type_t H5Location::childObjType(hsize_t index, H5_index_t index_type, H5_iter_order_t order, const char* objname) const { herr_t ret_value; - H5O_info_t objinfo; + H5O_info2_t objinfo; H5O_type_t objtype = H5O_TYPE_UNKNOWN; // Use C API to get information of the object - ret_value = H5Oget_info_by_idx2(getId(), objname, index_type, order, index, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret_value = H5Oget_info_by_idx3(getId(), objname, index_type, order, index, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT); // Throw exception if C API returns failure if (ret_value < 0) @@ -2058,11 +2173,11 @@ H5O_type_t H5Location::childObjType(hsize_t index, H5_index_t index_type, H5_ite //-------------------------------------------------------------------------- unsigned H5Location::childObjVersion(const char* objname) const { - H5O_info_t objinfo; + H5O_native_info_t objinfo; unsigned version = 0; // Use C API to get information of the object - herr_t ret_value = H5Oget_info_by_name2(getId(), objname, &objinfo, H5O_INFO_HDR, H5P_DEFAULT); + herr_t ret_value = H5Oget_native_info_by_name(getId(), objname, &objinfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); // Throw exception if C API returns failure if (ret_value < 0) diff --git a/c++/src/H5Location.h b/c++/src/H5Location.h index dc3db75..3bad8bc 100644 --- a/c++/src/H5Location.h +++ b/c++/src/H5Location.h @@ -118,8 +118,8 @@ class H5_DLLCPP H5Location : public IdComponent { DataSet openDataSet(const char* name, const DSetAccPropList& dapl = DSetAccPropList::DEFAULT) const; DataSet openDataSet(const H5std_string& name, const DSetAccPropList& dapl = DSetAccPropList::DEFAULT) const; - H5L_info_t getLinkInfo(const char* link_name, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; - H5L_info_t getLinkInfo(const H5std_string& link_name, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + H5L_info2_t getLinkInfo(const char* link_name, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + H5L_info2_t getLinkInfo(const H5std_string& link_name, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; // Returns the value of a symbolic link. H5std_string getLinkval(const char* link_name, size_t size=0) const; @@ -147,26 +147,47 @@ class H5_DLLCPP H5Location : public IdComponent { unsigned childObjVersion(const H5std_string& objname) const; // Retrieves information about an HDF5 object. - void getObjinfo(H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC) const; + void getObjinfo(H5O_info2_t& objinfo, unsigned fields = H5O_INFO_BASIC) const; // Retrieves information about an HDF5 object, given its name. - void getObjinfo(const char* name, H5O_info_t& objinfo, + void getObjinfo(const char* name, H5O_info2_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; - void getObjinfo(const H5std_string& name, H5O_info_t& objinfo, + void getObjinfo(const H5std_string& name, H5O_info2_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; // Retrieves information about an HDF5 object, given its index. void getObjinfo(const char* grp_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, + H5_iter_order_t order, hsize_t idx, H5O_info2_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; void getObjinfo(const H5std_string& grp_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, + H5_iter_order_t order, hsize_t idx, H5O_info2_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + // Retrieves native native information about an HDF5 object. + void getNativeObjinfo(H5O_native_info_t& objinfo, unsigned fields = H5O_NATIVE_INFO_HDR) const; + + // Retrieves native information about an HDF5 object, given its name. + void getNativeObjinfo(const char* name, H5O_native_info_t& objinfo, + unsigned fields = H5O_NATIVE_INFO_HDR, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + void getNativeObjinfo(const H5std_string& name, H5O_native_info_t& objinfo, + unsigned fields = H5O_NATIVE_INFO_HDR, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + + // Retrieves native information about an HDF5 object, given its index. + void getNativeObjinfo(const char* grp_name, H5_index_t idx_type, + H5_iter_order_t order, hsize_t idx, H5O_native_info_t& objinfo, + unsigned fields = H5O_NATIVE_INFO_HDR, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + void getNativeObjinfo(const H5std_string& grp_name, H5_index_t idx_type, + H5_iter_order_t order, hsize_t idx, H5O_native_info_t& objinfo, + unsigned fields = H5O_NATIVE_INFO_HDR, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + #ifndef H5_NO_DEPRECATED_SYMBOLS // Returns the type of an object in this group, given the // object's index. diff --git a/c++/src/H5Object.cpp b/c++/src/H5Object.cpp index 8d3334b..081cab7 100644 --- a/c++/src/H5Object.cpp +++ b/c++/src/H5Object.cpp @@ -52,9 +52,9 @@ extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name, } // userVisitOpWrpr interfaces between the user's function and the -// C library function H5Ovisit2 +// C library function H5Ovisit3 extern "C" herr_t userVisitOpWrpr(hid_t obj_id, const char *attr_name, - const H5O_info_t *obj_info, void *op_data) + const H5O_info2_t *obj_info, void *op_data) { H5std_string s_attr_name = H5std_string(attr_name); UserData4Visit* myData = reinterpret_cast<UserData4Visit *> (op_data); @@ -250,13 +250,11 @@ int H5Object::iterateAttrs(attr_operator_t user_op, unsigned *_idx, void *op_dat ///\param *op_data - IN: User-defined pointer to data required by the /// application for its processing of the object ///\param fields - IN: Flags specifying the fields to be retrieved -/// to the callback op via the H5O_info_t argument. +/// to the callback op via the H5O_info2_t argument. /// \li \c H5O_INFO_BASIC fileno, addr, type, and rc fields /// \li \c H5O_INFO_TIME atime, mtime, ctime, and btime fields /// \li \c H5O_INFO_NUM_ATTRS num_attrs field -/// \li \c H5O_INFO_HDR hdr field -/// \li \c H5O_INFO_META_SIZE meta_size field -/// \li \c H5O_INFO_ALL H5O_INFO_BASIC | H5O_INFO_TIME | H5O_INFO_NUM_ATTRS | H5O_INFO_HDR | H5O_INFO_META_SIZE +/// \li \c H5O_INFO_ALL H5O_INFO_BASIC | H5O_INFO_TIME | H5O_INFO_NUM_ATTRS ///\return /// \li On success: /// \li the return value of the first operator that returns a positive value @@ -266,7 +264,7 @@ int H5Object::iterateAttrs(attr_operator_t user_op, unsigned *_idx, void *op_dat /// wrong within the library or the operator failed ///\exception H5::Exception ///\par Description -/// For information, please refer to the H5Ovisit2 API in the HDF5 +/// For information, please refer to the H5Ovisit3 API in the HDF5 /// C Reference Manual. // Programmer Binh-Minh Ribler - Feb, 2019 //-------------------------------------------------------------------------- @@ -279,15 +277,15 @@ void H5Object::visit(H5_index_t idx_type, H5_iter_order_t order, visit_operator_ userData->obj = this; // Call the C API passing in op wrapper and info - herr_t ret_value = H5Ovisit2(getId(), idx_type, order, userVisitOpWrpr, static_cast<void *>(userData), fields); + herr_t ret_value = H5Ovisit3(getId(), idx_type, order, userVisitOpWrpr, static_cast<void *>(userData), fields); // Release memory delete userData; - // Throw exception if H5Ovisit2 failed, which could be a failure in + // Throw exception if H5Ovisit3 failed, which could be a failure in // the library or in the call back operator if (ret_value < 0) - throw Exception(inMemFunc("visit"), "H5Ovisit2 failed"); + throw Exception(inMemFunc("visit"), "H5Ovisit3 failed"); } //-------------------------------------------------------------------------- @@ -304,15 +302,15 @@ void H5Object::visit(H5_index_t idx_type, H5_iter_order_t order, visit_operator_ //-------------------------------------------------------------------------- unsigned H5Object::objVersion() const { - H5O_info_t objinfo; + H5O_native_info_t objinfo; unsigned version = 0; // Use C API to get information of the object - herr_t ret_value = H5Oget_info2(getId(), &objinfo, H5O_INFO_HDR); + herr_t ret_value = H5Oget_native_info(getId(), &objinfo, H5O_NATIVE_INFO_HDR); // Throw exception if C API returns failure if (ret_value < 0) - throw Exception(inMemFunc("objVersion"), "H5Oget_info failed"); + throw Exception(inMemFunc("objVersion"), "H5Oget_native_info failed"); // Return a valid version or throw an exception for invalid value else { @@ -332,9 +330,9 @@ unsigned H5Object::objVersion() const //-------------------------------------------------------------------------- int H5Object::getNumAttrs() const { - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ - if(H5Oget_info2(getId(), &oinfo, H5O_INFO_NUM_ATTRS) < 0) + if(H5Oget_info3(getId(), &oinfo, H5O_INFO_NUM_ATTRS) < 0) throw AttributeIException(inMemFunc("getNumAttrs"), "H5Oget_info failed"); else return(static_cast<int>(oinfo.num_attrs)); diff --git a/c++/src/H5Object.h b/c++/src/H5Object.h index 4a4e909..033b1b7 100644 --- a/c++/src/H5Object.h +++ b/c++/src/H5Object.h @@ -44,10 +44,10 @@ typedef void (*attr_operator_t)(H5Object& loc, const H5std_string attr_name, void *operator_data); -// Define the operator function pointer for H5Ovisit2(). +// Define the operator function pointer for H5Ovisit3(). typedef int (*visit_operator_t)(H5Object& obj, const H5std_string attr_name, - const H5O_info_t *oinfo, + const H5O_info2_t *oinfo, void *operator_data); // User data for attribute iteration diff --git a/c++/test/CMakeLists.txt b/c++/test/CMakeLists.txt index 75efc3b..5e7134d 100644 --- a/c++/test/CMakeLists.txt +++ b/c++/test/CMakeLists.txt @@ -56,4 +56,6 @@ else () endif () set_target_properties (cpp_testhdf5 PROPERTIES FOLDER test/cpp) -include (CMakeTests.cmake) +if (HDF5_TEST_CPP AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/c++/test/dsets.cpp b/c++/test/dsets.cpp index 14f1bd4..fc29307 100644 --- a/c++/test/dsets.cpp +++ b/c++/test/dsets.cpp @@ -1116,9 +1116,9 @@ static herr_t test_types(H5File& file) /*------------------------------------------------------------------------- - * Function: test_getObjinfo + * Function: test_getNativeObjinfo * - * Purpose Tests getObjinfo() + * Purpose Tests getNativeObjinfo() * * Return Success: 0 * Failure: -1 @@ -1126,7 +1126,7 @@ static herr_t test_types(H5File& file) * July, 2018 *------------------------------------------------------------------------- */ -static herr_t test_getinfo(H5File& file) +static herr_t test_getnativeinfo(H5File& file) { SUBTEST("Getting object information"); @@ -1142,18 +1142,18 @@ static herr_t test_getinfo(H5File& file) DataSet dataset(file.openDataSet(DSET_CHUNKED_NAME)); // Get dataset header info - H5O_info_t oinfo; - HDmemset(&oinfo, 0, sizeof(oinfo)); - dataset.getObjinfo(oinfo, H5O_INFO_HDR); - verify_val(oinfo.hdr.nchunks, 1, "DataSet::getObjinfo", __LINE__, __FILE__); + H5O_native_info_t ninfo; + HDmemset(&ninfo, 0, sizeof(ninfo)); + dataset.getNativeObjinfo(ninfo, H5O_NATIVE_INFO_HDR); + verify_val(ninfo.hdr.nchunks, 1, "DataSet::getNativeObjinfo", __LINE__, __FILE__); dataset.close(); // Open the dataset we created above and then close it. This is one // way to open an existing dataset for accessing. dataset = file.openDataSet(DSET_DEFAULT_NAME); - HDmemset(&oinfo, 0, sizeof(oinfo)); - dataset.getObjinfo(oinfo, H5O_INFO_ALL); - verify_val(oinfo.hdr.nchunks, 1, "DataSet::getObjinfo", __LINE__, __FILE__); + HDmemset(&ninfo, 0, sizeof(ninfo)); + dataset.getNativeObjinfo(ninfo, H5O_NATIVE_INFO_ALL); + verify_val(ninfo.hdr.nchunks, 1, "DataSet::getNativeObjinfo", __LINE__, __FILE__); dataset.close(); PASSED(); @@ -1169,10 +1169,10 @@ static herr_t test_getinfo(H5File& file) // catch all other exceptions catch (Exception& E) { - issue_fail_msg("test_getinfo", __LINE__, __FILE__); + issue_fail_msg("test_getnativeinfo", __LINE__, __FILE__); return -1; } -} // test_getinfo +} // test_getnativeinfo /*------------------------------------------------------------------------- @@ -1408,7 +1408,7 @@ void test_dset() nerrors += test_create(file) < 0 ? 1:0; nerrors += test_simple_io(file) < 0 ? 1:0; - nerrors += test_getinfo(file) < 0 ? 1:0; + nerrors += test_getnativeinfo(file) < 0 ? 1:0; nerrors += test_tconv(file) < 0 ? 1:0; nerrors += test_compression(file) < 0 ? 1:0; nerrors += test_nbit_compression(file) < 0 ? 1:0; diff --git a/c++/test/tattr.cpp b/c++/test/tattr.cpp index 4734755..9485ec6 100644 --- a/c++/test/tattr.cpp +++ b/c++/test/tattr.cpp @@ -519,7 +519,7 @@ static void test_attr_basic_read() verify_val(num_attrs, 3, "DataSet::getNumAttrs", __LINE__, __FILE__); // Verify the correct number of attributes another way - H5O_info_t oinfo; + H5O_info2_t oinfo; HDmemset(&oinfo, 0, sizeof(oinfo)); dataset.getObjinfo(oinfo, H5O_INFO_NUM_ATTRS); verify_val(oinfo.num_attrs, 3, "DataSet::getObjinfo", __LINE__, __FILE__); @@ -670,7 +670,7 @@ static void test_attr_compound_read() verify_val(num_attrs, 1, "DataSet::getNumAttrs", __LINE__, __FILE__); // Verify the correct number of attributes another way - H5O_info_t oinfo; + H5O_info2_t oinfo; HDmemset(&oinfo, 0, sizeof(oinfo)); dataset.getObjinfo(oinfo, H5O_INFO_NUM_ATTRS); verify_val(oinfo.num_attrs, 1, "DataSet::getObjinfo", __LINE__, __FILE__); diff --git a/c++/test/tfile.cpp b/c++/test/tfile.cpp index 055cf23..a0231a6 100644 --- a/c++/test/tfile.cpp +++ b/c++/test/tfile.cpp @@ -716,10 +716,10 @@ static void test_libver_bounds_real( verify_val(obj_version, oh_vers_create, "H5File::childObjVersion", __LINE__, __FILE__); // Verify object header version another way - H5O_info_t oinfo; - HDmemset(&oinfo, 0, sizeof(oinfo)); - file.getObjinfo(oinfo, H5O_INFO_HDR); - verify_val(oinfo.hdr.version, oh_vers_create, "H5File::getObjinfo", __LINE__, __FILE__); + H5O_native_info_t ninfo; + HDmemset(&ninfo, 0, sizeof(ninfo)); + file.getNativeObjinfo(ninfo, H5O_NATIVE_INFO_HDR); + verify_val(ninfo.hdr.version, oh_vers_create, "H5File::getNativeObjinfo", __LINE__, __FILE__); /* * Reopen the file and make sure the root group still has the correct @@ -744,9 +744,9 @@ static void test_libver_bounds_real( verify_val(obj_version, oh_vers_mod, "Group::objVersion", __LINE__, __FILE__); // Verify object header version another way - HDmemset(&oinfo, 0, sizeof(oinfo)); - group.getObjinfo(oinfo, H5O_INFO_HDR); - verify_val(oinfo.hdr.version, oh_vers_mod, "Group::getObjinfo", __LINE__, __FILE__); + HDmemset(&ninfo, 0, sizeof(ninfo)); + group.getNativeObjinfo(ninfo, H5O_NATIVE_INFO_HDR); + verify_val(ninfo.hdr.version, oh_vers_mod, "Group::getNativeObjinfo", __LINE__, __FILE__); group.close(); // close "/G1" diff --git a/c++/test/titerate.cpp b/c++/test/titerate.cpp index e77ebcc..c689087 100644 --- a/c++/test/titerate.cpp +++ b/c++/test/titerate.cpp @@ -96,7 +96,7 @@ int iter_strcmp(const void *s1, const void *s2) * Purpose Custom link iteration callback routine *------------------------------------------------------------------------- */ -static herr_t liter_cb(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info_t H5_ATTR_UNUSED *link_info, void *op_data) +static herr_t liter_cb(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info2_t H5_ATTR_UNUSED *link_info, void *op_data) { iter_info *info = (iter_info *)op_data; static int count = 0; @@ -158,7 +158,7 @@ static void test_iter_group(FileAccPropList& fapl) /* Test iterating over empty group */ info.command = RET_ZERO; idx = 0; - ret = H5Literate(file.getId(), H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info); + ret = H5Literate2(file.getId(), H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info); verify_val(ret, SUCCEED, "H5Literate", __LINE__, __FILE__); DataType datatype(PredType::NATIVE_INT); @@ -207,7 +207,7 @@ static void test_iter_group(FileAccPropList& fapl) H5std_string obj_name; for (i = 0; i < nobjs; i++) { - //H5O_info_t oinfo; /* Object info */ + //H5O_info2_t oinfo; /* Object info */ obj_name = root_group.getObjnameByIdx(i); //ret = (herr_t)H5Lget_name_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, dataset_name, (size_t)NAMELEN, H5P_DEFAULT); @@ -287,7 +287,7 @@ static void test_iter_group(FileAccPropList& fapl) /* Test all objects in group, when callback always returns 0 */ info.command = RET_ZERO; idx = 0; - if((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0) + if((ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0) TestErrPrintf("Group iteration function didn't return zero correctly!\n"); /* Test all objects in group, when callback always returns 1 */ @@ -295,7 +295,7 @@ static void test_iter_group(FileAccPropList& fapl) info.command = RET_TWO; i = 0; idx = 0; - while((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0) { + while((ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0) { /* Verify return value from iterator gets propagated correctly */ verify_val(ret, 2, "H5Literate", __LINE__, __FILE__); @@ -321,7 +321,7 @@ static void test_iter_group(FileAccPropList& fapl) info.command = new_format ? RET_CHANGE2 : RET_CHANGE; i = 0; idx = 0; - while((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) >= 0) { + while((ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) >= 0) { /* Verify return value from iterator gets propagated correctly */ verify_val(ret, 1, "H5Literate", __LINE__, __FILE__); diff --git a/c++/test/tlinks.cpp b/c++/test/tlinks.cpp index 491cd6a..1bdd442 100644 --- a/c++/test/tlinks.cpp +++ b/c++/test/tlinks.cpp @@ -190,7 +190,7 @@ const H5std_string GROUP2NAME("Second_group"); static void test_lcpl(hid_t fapl_id, hbool_t new_format) { - H5L_info_t linfo; + H5L_info2_t linfo; char filename[1024]; hsize_t dims[2]; @@ -604,7 +604,7 @@ const int RANK = 2; const int DIM1 = 2; // Operator function -static int visit_obj_cb(H5Object& obj, const H5std_string name, const H5O_info_t *oinfo, void *_op_data) +static int visit_obj_cb(H5Object& obj, const H5std_string name, const H5O_info2_t *oinfo, void *_op_data) { ovisit_ud_t *op_data = static_cast <ovisit_ud_t *>(_op_data); diff --git a/c++/test/tobject.cpp b/c++/test/tobject.cpp index 232ece2..fd0f5ce 100644 --- a/c++/test/tobject.cpp +++ b/c++/test/tobject.cpp @@ -542,7 +542,7 @@ const H5std_string GROUP1NAME("group1"); const H5std_string GROUP2NAME("group2"); static void test_getobjectinfo_same_file() { - H5O_info_t oinfo1, oinfo2; /* Object info structs */ + H5O_info2_t oinfo1, oinfo2; /* Object info structs */ // Output message about test being performed SUBTEST("Group::getObjinfo"); diff --git a/c++/test/trefer.cpp b/c++/test/trefer.cpp index 562b127..8a6fb51 100644 --- a/c++/test/trefer.cpp +++ b/c++/test/trefer.cpp @@ -482,7 +482,7 @@ static void test_reference_group() verify_val(fname, FILE1, "H5Group::getFileName",__LINE__,__FILE__); // Check object type using Group::getObjinfo() - H5O_info_t oinfo; + H5O_info2_t oinfo; HDmemset(&oinfo, 0, sizeof(oinfo)); group.getObjinfo(".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, oinfo); verify_val(oinfo.type, H5O_TYPE_DATASET, "Group::getObjinfo",__LINE__,__FILE__); diff --git a/config/cmake/HDFCompilerFlags.cmake b/config/cmake/HDFCompilerFlags.cmake index c803384..99a8f56 100644 --- a/config/cmake/HDFCompilerFlags.cmake +++ b/config/cmake/HDFCompilerFlags.cmake @@ -151,7 +151,12 @@ if (NOT MSVC AND CMAKE_COMPILER_IS_GNUCC) # Append more extra warning flags that only gcc 4.5+ know about if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.5) - set (H5_CFLAGS1 "${H5_CFLAGS1} -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants") + set (H5_CFLAGS1 "${H5_CFLAGS1} -Wstrict-overflow=5 -Wjump-misses-init") + if (HDF5_ENABLE_DEV_WARNINGS) + set (H5_CFLAGS0 "${H5_CFLAGS0} -Wunsuffixed-float-constants") + else () + set (H5_CFLAGS0 "${H5_CFLAGS0} -Wno-unsuffixed-float-constants") + endif () endif () # Append more extra warning flags that only gcc 4.6+ know about diff --git a/config/cmake/jrunTest.cmake b/config/cmake/jrunTest.cmake index ee4517c..0315536 100644 --- a/config/cmake/jrunTest.cmake +++ b/config/cmake/jrunTest.cmake @@ -75,16 +75,19 @@ message (STATUS "COMMAND Result: ${TEST_RESULT}") # if the .err file exists and ERRROR_APPEND is enabled if (EXISTS "${TEST_FOLDER}/${TEST_OUTPUT}.err") file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM) - if (TEST_MASK_FILE) - STRING(REGEX REPLACE "CurrentDir is [^\n]+\n" "CurrentDir is (dir name)\n" TEST_STREAM "${TEST_STREAM}") - endif () + list(LENGTH TEST_STREAM test_len) + if (test_len GREATER 0) + if (TEST_MASK_FILE) + STRING(REGEX REPLACE "CurrentDir is [^\n]+\n" "CurrentDir is (dir name)\n" TEST_STREAM "${TEST_STREAM}") + endif () - if (NOT ERROR_APPEND) - # write back to original .err file - file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT}.err "${TEST_STREAM}") - else () - # append error output to the stdout output file - file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}") + if (NOT ERROR_APPEND) + # write back to original .err file + file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT}.err "${TEST_STREAM}") + else () + # append error output to the stdout output file + file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}") + endif () endif () endif () @@ -122,150 +125,172 @@ endif () message (STATUS "COMMAND Error: ${TEST_ERROR}") # compare output files to references unless this must be skipped +set (TEST_COMPARE_RESULT 0) if (NOT TEST_SKIP_COMPARE) if (EXISTS "${TEST_FOLDER}/${TEST_REFERENCE}") - if (WIN32 OR MINGW) - configure_file(${TEST_FOLDER}/${TEST_REFERENCE} ${TEST_FOLDER}/${TEST_REFERENCE}.tmp NEWLINE_STYLE CRLF) - if (EXISTS "${TEST_FOLDER}/${TEST_REFERENCE}.tmp") - file(RENAME ${TEST_FOLDER}/${TEST_REFERENCE}.tmp ${TEST_FOLDER}/${TEST_REFERENCE}) + file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM) + list(LENGTH TEST_STREAM test_len) + if (test_len GREATER 0) + if (WIN32 OR MINGW) + configure_file(${TEST_FOLDER}/${TEST_REFERENCE} ${TEST_FOLDER}/${TEST_REFERENCE}.tmp NEWLINE_STYLE CRLF) + if (EXISTS "${TEST_FOLDER}/${TEST_REFERENCE}.tmp") + file(RENAME ${TEST_FOLDER}/${TEST_REFERENCE}.tmp ${TEST_FOLDER}/${TEST_REFERENCE}) + endif () + #file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM) + #file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}") endif () - #file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM) - #file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}") - endif () - if (NOT TEST_SORT_COMPARE) - # now compare the output with the reference - execute_process ( - COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE} - RESULT_VARIABLE TEST_RESULT - ) - else () - file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1) - file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2) - list (SORT v1) - list (SORT v2) - if (NOT v1 STREQUAL v2) - set(TEST_RESULT 1) + if (NOT TEST_SORT_COMPARE) + # now compare the output with the reference + execute_process ( + COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE} + RESULT_VARIABLE TEST_COMPARE_RESULT + ) + else () + file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1) + file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2) + list (SORT v1) + list (SORT v2) + if (NOT v1 STREQUAL v2) + set(TEST_COMPARE_RESULT 1) + endif () endif () - endif () - if (TEST_RESULT) - set (TEST_RESULT 0) - file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act) - list (LENGTH test_act len_act) - file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref) - list (LENGTH test_ref len_ref) - if (len_act GREATER 0 AND len_ref GREATER 0) - math (EXPR _FP_LEN "${len_ref} - 1") - foreach (line RANGE 0 ${_FP_LEN}) - list (GET test_act ${line} str_act) - list (GET test_ref ${line} str_ref) - if (NOT str_act STREQUAL str_ref) - if (str_act) - set (TEST_RESULT 1) - message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n") + if (TEST_COMPARE_RESULT) + set (TEST_COMPARE_RESULT 0) + file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act) + list (LENGTH test_act len_act) + file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref) + list (LENGTH test_ref len_ref) + if (len_act GREATER 0 AND len_ref GREATER 0) + math (EXPR _FP_LEN "${len_ref} - 1") + foreach (line RANGE 0 ${_FP_LEN}) + list (GET test_act ${line} str_act) + list (GET test_ref ${line} str_ref) + if (NOT str_act STREQUAL str_ref) + if (str_act) + set (TEST_COMPARE_RESULT 1) + message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n") + endif () endif () + endforeach () + else () + if (len_act EQUAL 0) + message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty") + endif () + if (len_ref EQUAL 0) + message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty") endif () - endforeach () - else () - if (len_act EQUAL 0) - message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty") endif () - if (len_ref EQUAL 0) - message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty") + if (NOT len_act EQUAL len_ref) + set (TEST_COMPARE_RESULT 1) endif () endif () - if (NOT len_act EQUAL len_ref) - set (TEST_RESULT 1) - endif () endif () - message (STATUS "COMPARE Result: ${TEST_RESULT}") + message (STATUS "COMPARE Result: ${TEST_COMPARE_RESULT}") # again, if return value is !=0 scream and shout - if (TEST_RESULT) + if (TEST_COMPARE_RESULT) message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}") endif () endif () # now compare the .err file with the error reference, if supplied + set (TEST_ERRREF_RESULT 0) if (TEST_ERRREF) - if (WIN32 OR MINGW) - configure_file(${TEST_FOLDER}/${TEST_ERRREF} ${TEST_FOLDER}/${TEST_ERRREF}.tmp NEWLINE_STYLE CRLF) - if (EXISTS "${TEST_FOLDER}/${TEST_ERRREF}.tmp") - file(RENAME ${TEST_FOLDER}/${TEST_ERRREF}.tmp ${TEST_FOLDER}/${TEST_ERRREF}) + file (READ ${TEST_FOLDER}/${TEST_ERRREF} TEST_STREAM) + list(LENGTH TEST_STREAM test_len) + if (test_len GREATER 0) + if (WIN32 OR MINGW) + configure_file(${TEST_FOLDER}/${TEST_ERRREF} ${TEST_FOLDER}/${TEST_ERRREF}.tmp NEWLINE_STYLE CRLF) + if (EXISTS "${TEST_FOLDER}/${TEST_ERRREF}.tmp") + file(RENAME ${TEST_FOLDER}/${TEST_ERRREF}.tmp ${TEST_FOLDER}/${TEST_ERRREF}) + endif () + #file (READ ${TEST_FOLDER}/${TEST_ERRREF} TEST_STREAM) + #file (WRITE ${TEST_FOLDER}/${TEST_ERRREF} "${TEST_STREAM}") endif () - #file (READ ${TEST_FOLDER}/${TEST_ERRREF} TEST_STREAM) - #file (WRITE ${TEST_FOLDER}/${TEST_ERRREF} "${TEST_STREAM}") - endif () - # now compare the error output with the error reference - execute_process ( - COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT}.err ${TEST_FOLDER}/${TEST_ERRREF} - RESULT_VARIABLE TEST_RESULT - ) - if (TEST_RESULT) - set (TEST_RESULT 0) - file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT}.err test_act) - list (LENGTH test_act len_act) - file (STRINGS ${TEST_FOLDER}/${TEST_ERRREF} test_ref) - list (LENGTH test_ref len_ref) - math (EXPR _FP_LEN "${len_ref} - 1") - if (len_act GREATER 0 AND len_ref GREATER 0) + # now compare the error output with the error reference + execute_process ( + COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT}.err ${TEST_FOLDER}/${TEST_ERRREF} + RESULT_VARIABLE TEST_ERRREF_RESULT + ) + if (TEST_ERRREF_RESULT) + set (TEST_ERRREF_RESULT 0) + file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT}.err test_act) + list (LENGTH test_act len_act) + file (STRINGS ${TEST_FOLDER}/${TEST_ERRREF} test_ref) + list (LENGTH test_ref len_ref) math (EXPR _FP_LEN "${len_ref} - 1") - foreach (line RANGE 0 ${_FP_LEN}) - list (GET test_act ${line} str_act) - list (GET test_ref ${line} str_ref) - if (NOT str_act STREQUAL str_ref) - if (str_act) - set (TEST_RESULT 1) - message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n") + if (len_act GREATER 0 AND len_ref GREATER 0) + math (EXPR _FP_LEN "${len_ref} - 1") + foreach (line RANGE 0 ${_FP_LEN}) + list (GET test_act ${line} str_act) + list (GET test_ref ${line} str_ref) + if (NOT str_act STREQUAL str_ref) + if (str_act) + set (TEST_ERRREF_RESULT 1) + message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n") + endif () endif () + endforeach () + else () + if (len_act EQUAL 0) + message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT}.err is empty") + endif () + if (len_ref EQUAL 0) + message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_ERRREF} is empty") endif () - endforeach () - else () - if (len_act EQUAL 0) - message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT}.err is empty") endif () - if (len_ref EQUAL 0) - message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_ERRREF} is empty") + if (NOT len_act EQUAL len_ref) + set (TEST_ERRREF_RESULT 1) endif () endif () - if (NOT len_act EQUAL len_ref) - set (TEST_RESULT 1) - endif () endif () - message (STATUS "COMPARE Result: ${TEST_RESULT}") + message (STATUS "COMPARE Result: ${TEST_ERRREF_RESULT}") # again, if return value is !=0 scream and shout - if (TEST_RESULT) + if (TEST_ERRREF_RESULT) message (FATAL_ERROR "Failed: The error output of ${TEST_OUTPUT}.err did not match ${TEST_ERRREF}") endif () endif () endif () +set (TEST_GREP_RESULT 0) if (TEST_GREP_COMPARE) # now grep the output with the reference file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM) + list(LENGTH TEST_STREAM test_len) + if (test_len GREATER 0) + # TEST_REFERENCE should always be matched + string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM}) + string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_GREP_RESULT) + if (NOT TEST_GREP_RESULT) + message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}") + endif () - # TEST_REFERENCE should always be matched - string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM}) - string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT) - if (NOT TEST_RESULT) - message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}") - endif () - - string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM}) - if (TEST_EXPECT) - # TEST_EXPECT (1) interprets TEST_FILTER as; NOT to match - string (LENGTH "${TEST_MATCH}" TEST_RESULT) - if (TEST_RESULT) - message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}") + string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM}) + if (TEST_EXPECT) + # TEST_EXPECT (1) interprets TEST_FILTER as; NOT to match + string (LENGTH "${TEST_MATCH}" TEST_GREP_RESULT) + if (TEST_GREP_RESULT) + message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}") + endif () endif () endif () endif () +# dump the output unless nodisplay option is set +if (TEST_SKIP_COMPARE AND NOT TEST_NO_DISPLAY) + file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM) + execute_process ( + COMMAND ${CMAKE_COMMAND} -E echo ${TEST_STREAM} + RESULT_VARIABLE TEST_RESULT + ) +endif () + # everything went fine... message (STATUS "${TEST_PROGRAM} Passed") diff --git a/config/cmake/vfdTest.cmake b/config/cmake/vfdTest.cmake index 12ee40b..c07d005 100644 --- a/config/cmake/vfdTest.cmake +++ b/config/cmake/vfdTest.cmake @@ -64,7 +64,7 @@ if (NOT TEST_RESULT EQUAL TEST_EXPECT) if (NOT TEST_NOERRDISPLAY) if (EXISTS "${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.out") file (READ ${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.out TEST_STREAM) - message (STATUS "Output USING ${TEST_VFD}:\n${TEST_STREAM}") + message (STATUS "Output USING ${TEST_VFD}:\n${TEST_STREAM}") endif () endif () message (FATAL_ERROR "Failed: Test program ${TEST_PROGRAM} exited != ${TEST_EXPECT}.\n${TEST_ERROR}") diff --git a/config/cmake/volTest.cmake b/config/cmake/volTest.cmake index 1dcd2b1..e735109 100644 --- a/config/cmake/volTest.cmake +++ b/config/cmake/volTest.cmake @@ -64,7 +64,7 @@ if (NOT TEST_RESULT EQUAL TEST_EXPECT) if (NOT TEST_NOERRDISPLAY) if (EXISTS "${TEST_FOLDER}/${TEST_OUTPUT}.out") file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.out TEST_STREAM) - message (STATUS "Output USING ${TEST_VOL}:\n${TEST_STREAM}") + message (STATUS "Output USING ${TEST_VOL}:\n${TEST_STREAM}") endif () endif () message (FATAL_ERROR "Failed: Test program ${TEST_PROGRAM} exited != ${TEST_EXPECT}.\n${TEST_ERROR}") diff --git a/config/cmake_ext_mod/CTestCustom.cmake b/config/cmake_ext_mod/CTestCustom.cmake index 0111bef..4e292a7 100644 --- a/config/cmake_ext_mod/CTestCustom.cmake +++ b/config/cmake_ext_mod/CTestCustom.cmake @@ -2,13 +2,14 @@ set (CTEST_CUSTOM_MAXIMUM_NUMBER_OF_WARNINGS 3000) set (CTEST_CUSTOM_WARNING_EXCEPTION ${CTEST_CUSTOM_WARNING_EXCEPTION} - "note.*expected.*void.*but argument is of type.*volatile" - "SZIP.src.*:[ \t]*warning" - "jpeg.src.*:[ \t]*warning" - "POSIX name for this item is deprecated" - "disabling jobserver mode" - "warning.*implicit declaration of function" - "note: expanded from macro" + ".*note.*expected.*void.*but argument is of type.*volatile.*" + ".*src.SZIP.*:[ \t]*warning.*" + ".*src.ZLIB.*:[ \t]*warning.*" + ".*jpeg.src.*:[ \t]*warning.*" + ".*POSIX name for this item is deprecated.*" + ".*disabling jobserver mode.*" + ".*warning.*implicit declaration of function.*" + ".*note: expanded from macro.*" ) set (CTEST_CUSTOM_MEMCHECK_IGNORE diff --git a/config/cmake_ext_mod/grepTest.cmake b/config/cmake_ext_mod/grepTest.cmake index a6f1c7f..c65c951 100644 --- a/config/cmake_ext_mod/grepTest.cmake +++ b/config/cmake_ext_mod/grepTest.cmake @@ -82,93 +82,102 @@ if (TEST_FIND_RESULT GREATER 0) endif () # if the TEST_ERRREF exists grep the error output with the error reference +set (TEST_ERRREF_RESULT 0) if (TEST_ERRREF) # if the .err file exists grep the error output with the error reference before comparing stdout if (EXISTS "${TEST_FOLDER}/${TEST_OUTPUT}.err") file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_ERR_STREAM) - - # TEST_ERRREF should always be matched - string (REGEX MATCH "${TEST_ERRREF}" TEST_MATCH ${TEST_ERR_STREAM}) - string (COMPARE EQUAL "${TEST_ERRREF}" "${TEST_MATCH}" TEST_RESULT) - if (NOT TEST_RESULT) - message (FATAL_ERROR "Failed: The error output of ${TEST_PROGRAM} did not contain ${TEST_ERRREF}") + list(LENGTH TEST_ERR_STREAM test_len) + if (test_len GREATER 0) + # TEST_ERRREF should always be matched + string (REGEX MATCH "${TEST_ERRREF}" TEST_MATCH ${TEST_ERR_STREAM}) + string (COMPARE EQUAL "${TEST_ERRREF}" "${TEST_MATCH}" TEST_ERRREF_RESULT) + if (NOT TEST_ERRREF_RESULT) + message (FATAL_ERROR "Failed: The error output of ${TEST_PROGRAM} did not contain ${TEST_ERRREF}") + endif () endif () endif () #always compare output file to reference unless this must be skipped + set (TEST_COMPARE_RESULT 0) if (NOT TEST_SKIP_COMPARE) if (EXISTS "${TEST_FOLDER}/${TEST_REFERENCE}") - if (WIN32 OR MINGW) - configure_file(${TEST_FOLDER}/${TEST_REFERENCE} ${TEST_FOLDER}/${TEST_REFERENCE}.tmp NEWLINE_STYLE CRLF) - if (EXISTS "${TEST_FOLDER}/${TEST_REFERENCE}.tmp") - file(RENAME ${TEST_FOLDER}/${TEST_REFERENCE}.tmp ${TEST_FOLDER}/${TEST_REFERENCE}) + file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM) + list(LENGTH TEST_STREAM test_len) + if (test_len GREATER 0) + if (WIN32 OR MINGW) + configure_file(${TEST_FOLDER}/${TEST_REFERENCE} ${TEST_FOLDER}/${TEST_REFERENCE}.tmp NEWLINE_STYLE CRLF) + if (EXISTS "${TEST_FOLDER}/${TEST_REFERENCE}.tmp") + file(RENAME ${TEST_FOLDER}/${TEST_REFERENCE}.tmp ${TEST_FOLDER}/${TEST_REFERENCE}) + endif () + #file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM) + #file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}") endif () - #file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM) - #file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}") - endif () - if (NOT TEST_SORT_COMPARE) - # now compare the output with the reference - execute_process ( - COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE} - RESULT_VARIABLE TEST_RESULT - ) - else () - file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1) - file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2) - list (SORT v1) - list (SORT v2) - if (NOT v1 STREQUAL v2) - set(TEST_RESULT 1) + if (NOT TEST_SORT_COMPARE) + # now compare the output with the reference + execute_process ( + COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE} + RESULT_VARIABLE TEST_COMPARE_RESULT + ) + else () + file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1) + file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2) + list (SORT v1) + list (SORT v2) + if (NOT v1 STREQUAL v2) + set(TEST_COMPARE_RESULT 1) + endif () endif () - endif () - if (TEST_RESULT) - set (TEST_RESULT 0) - file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act) - list (LENGTH test_act len_act) - file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref) - list (LENGTH test_ref len_ref) - if (len_act GREATER 0 AND len_ref GREATER 0) - math (EXPR _FP_LEN "${len_ref} - 1") - foreach (line RANGE 0 ${_FP_LEN}) - list (GET test_act ${line} str_act) - list (GET test_ref ${line} str_ref) - if (NOT str_act STREQUAL str_ref) - if (str_act) - set (TEST_RESULT 1) - message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n") + if (TEST_COMPARE_RESULT) + set (TEST_COMPARE_RESULT 0) + file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act) + list (LENGTH test_act len_act) + file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref) + list (LENGTH test_ref len_ref) + if (len_act GREATER 0 AND len_ref GREATER 0) + math (EXPR _FP_LEN "${len_ref} - 1") + foreach (line RANGE 0 ${_FP_LEN}) + list (GET test_act ${line} str_act) + list (GET test_ref ${line} str_ref) + if (NOT str_act STREQUAL str_ref) + if (str_act) + set (TEST_COMPARE_RESULT 1) + message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n") + endif () endif () + endforeach () + else () + if (len_act EQUAL 0) + message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty") + endif () + if (len_ref EQUAL 0) + message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty") endif () - endforeach () - else () - if (len_act EQUAL 0) - message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty") endif () - if (len_ref EQUAL 0) - message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty") + if (NOT len_act EQUAL len_ref) + set (TEST_COMPARE_RESULT 1) endif () endif () - if (NOT len_act EQUAL len_ref) - set (TEST_RESULT 1) - endif () endif () - message (STATUS "COMPARE Result: ${TEST_RESULT}") + message (STATUS "COMPARE Result: ${TEST_COMPARE_RESULT}") # again, if return value is !=0 scream and shout - if (TEST_RESULT) + if (TEST_COMPARE_RESULT) message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}") endif () endif () endif () else () # else grep the output with the reference + set (TEST_GREP_RESULT 0) file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM) # TEST_REFERENCE should always be matched string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM}) - string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT) - if (NOT TEST_RESULT) + string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_GREP_RESULT) + if (NOT TEST_GREP_RESULT) message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}") endif () endif () @@ -178,8 +187,8 @@ if (TEST_FILTER) string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM}) if (TEST_EXPECT) # TEST_EXPECT (1) interprets TEST_FILTER as; NOT to match - string (LENGTH "${TEST_MATCH}" TEST_RESULT) - if (TEST_RESULT) + string (LENGTH "${TEST_MATCH}" TEST_GREP_RESULT) + if (TEST_GREP_RESULT) message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}") endif () endif () diff --git a/config/cmake_ext_mod/runTest.cmake b/config/cmake_ext_mod/runTest.cmake index 0c4a5a0..6440c81 100644 --- a/config/cmake_ext_mod/runTest.cmake +++ b/config/cmake_ext_mod/runTest.cmake @@ -90,18 +90,21 @@ message (STATUS "COMMAND Result: ${TEST_RESULT}") # if the .err file exists and ERRROR_APPEND is enabled if (EXISTS "${TEST_FOLDER}/${TEST_OUTPUT}.err") file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM) - if (TEST_MASK_FILE) - STRING(REGEX REPLACE "CurrentDir is [^\n]+\n" "CurrentDir is (dir name)\n" TEST_STREAM "${TEST_STREAM}") - endif () - # remove special output - string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}") + list(LENGTH TEST_STREAM test_len) + if (test_len GREATER 0) + if (TEST_MASK_FILE) + STRING(REGEX REPLACE "CurrentDir is [^\n]+\n" "CurrentDir is (dir name)\n" TEST_STREAM "${TEST_STREAM}") + endif () + # remove special output + string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}") - if (NOT ERROR_APPEND) - # write back to original .err file - file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT}.err "${TEST_STREAM}") - else () - # append error output to the stdout output file - file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}") + if (NOT ERROR_APPEND) + # write back to original .err file + file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT}.err "${TEST_STREAM}") + else () + # append error output to the stdout output file + file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}") + endif () endif () endif () @@ -198,151 +201,164 @@ endif () if (TEST_REF_FILTER) #message (STATUS "TEST_REF_FILTER: ${TEST_APPEND}${TEST_REF_FILTER}") file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM) - STRING(REGEX REPLACE "${TEST_REF_APPEND}" "${TEST_REF_FILTER}" TEST_STREAM "${TEST_STREAM}") + string (REGEX REPLACE "${TEST_REF_APPEND}" "${TEST_REF_FILTER}" TEST_STREAM "${TEST_STREAM}") file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}") endif () # compare output files to references unless this must be skipped +set (TEST_COMPARE_RESULT 0) if (NOT TEST_SKIP_COMPARE) if (EXISTS "${TEST_FOLDER}/${TEST_REFERENCE}") - if (WIN32 OR MINGW) - configure_file(${TEST_FOLDER}/${TEST_REFERENCE} ${TEST_FOLDER}/${TEST_REFERENCE}.tmp NEWLINE_STYLE CRLF) - if (EXISTS "${TEST_FOLDER}/${TEST_REFERENCE}.tmp") - file(RENAME ${TEST_FOLDER}/${TEST_REFERENCE}.tmp ${TEST_FOLDER}/${TEST_REFERENCE}) + file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM) + list(LENGTH TEST_STREAM test_len) + if (test_len GREATER 0) + if (WIN32 OR MINGW) + configure_file(${TEST_FOLDER}/${TEST_REFERENCE} ${TEST_FOLDER}/${TEST_REFERENCE}.tmp NEWLINE_STYLE CRLF) + if (EXISTS "${TEST_FOLDER}/${TEST_REFERENCE}.tmp") + file(RENAME ${TEST_FOLDER}/${TEST_REFERENCE}.tmp ${TEST_FOLDER}/${TEST_REFERENCE}) + endif () + #file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM) + #file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}") endif () - #file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM) - #file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}") - endif () - if (NOT TEST_SORT_COMPARE) - # now compare the output with the reference - execute_process ( - COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE} - RESULT_VARIABLE TEST_RESULT - ) - else () - file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1) - file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2) - list (SORT v1) - list (SORT v2) - if (NOT v1 STREQUAL v2) - set(TEST_RESULT 1) + if (NOT TEST_SORT_COMPARE) + # now compare the output with the reference + execute_process ( + COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE} + RESULT_VARIABLE TEST_COMPARE_RESULT + ) + else () + file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1) + file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2) + list (SORT v1) + list (SORT v2) + if (NOT v1 STREQUAL v2) + set(TEST_COMPARE_RESULT 1) + endif () endif () - endif () - if (TEST_RESULT) - set (TEST_RESULT 0) - file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act) - list (LENGTH test_act len_act) - file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref) - list (LENGTH test_ref len_ref) - if (len_act GREATER 0 AND len_ref GREATER 0) - math (EXPR _FP_LEN "${len_ref} - 1") - foreach (line RANGE 0 ${_FP_LEN}) - list (GET test_act ${line} str_act) - list (GET test_ref ${line} str_ref) - if (NOT str_act STREQUAL str_ref) - if (str_act) - set (TEST_RESULT 1) - message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n") + if (TEST_COMPARE_RESULT) + set (TEST_COMPARE_RESULT 0) + file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act) + list (LENGTH test_act len_act) + file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref) + list (LENGTH test_ref len_ref) + if (len_act GREATER 0 AND len_ref GREATER 0) + math (EXPR _FP_LEN "${len_ref} - 1") + foreach (line RANGE 0 ${_FP_LEN}) + list (GET test_act ${line} str_act) + list (GET test_ref ${line} str_ref) + if (NOT str_act STREQUAL str_ref) + if (str_act) + set (TEST_COMPARE_RESULT 1) + message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n") + endif () endif () + endforeach () + else () + if (len_act EQUAL 0) + message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty") + endif () + if (len_ref EQUAL 0) + message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty") endif () - endforeach () - else () - if (len_act EQUAL 0) - message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty") endif () - if (len_ref EQUAL 0) - message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty") + if (NOT len_act EQUAL len_ref) + set (TEST_COMPARE_RESULT 1) endif () endif () - if (NOT len_act EQUAL len_ref) - set (TEST_RESULT 1) - endif () endif () - message (STATUS "COMPARE Result: ${TEST_RESULT}") + message (STATUS "COMPARE Result: ${TEST_COMPARE_RESULT}") # again, if return value is !=0 scream and shout - if (TEST_RESULT) + if (TEST_COMPARE_RESULT) message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}") endif () endif () # now compare the .err file with the error reference, if supplied + set (TEST_ERRREF_RESULT 0) if (TEST_ERRREF) - if (WIN32 OR MINGW) - configure_file(${TEST_FOLDER}/${TEST_ERRREF} ${TEST_FOLDER}/${TEST_ERRREF}.tmp NEWLINE_STYLE CRLF) - if (EXISTS "${TEST_FOLDER}/${TEST_ERRREF}.tmp") - file(RENAME ${TEST_FOLDER}/${TEST_ERRREF}.tmp ${TEST_FOLDER}/${TEST_ERRREF}) + file (READ ${TEST_FOLDER}/${TEST_ERRREF} TEST_STREAM) + list(LENGTH TEST_STREAM test_len) + if (test_len GREATER 0) + if (WIN32 OR MINGW) + configure_file(${TEST_FOLDER}/${TEST_ERRREF} ${TEST_FOLDER}/${TEST_ERRREF}.tmp NEWLINE_STYLE CRLF) + if (EXISTS "${TEST_FOLDER}/${TEST_ERRREF}.tmp") + file(RENAME ${TEST_FOLDER}/${TEST_ERRREF}.tmp ${TEST_FOLDER}/${TEST_ERRREF}) + endif () + #file (READ ${TEST_FOLDER}/${TEST_ERRREF} TEST_STREAM) + #file (WRITE ${TEST_FOLDER}/${TEST_ERRREF} "${TEST_STREAM}") endif () - #file (READ ${TEST_FOLDER}/${TEST_ERRREF} TEST_STREAM) - #file (WRITE ${TEST_FOLDER}/${TEST_ERRREF} "${TEST_STREAM}") - endif () - # now compare the error output with the error reference - execute_process ( - COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT}.err ${TEST_FOLDER}/${TEST_ERRREF} - RESULT_VARIABLE TEST_RESULT - ) - if (TEST_RESULT) - set (TEST_RESULT 0) - file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT}.err test_act) - list (LENGTH test_act len_act) - file (STRINGS ${TEST_FOLDER}/${TEST_ERRREF} test_ref) - list (LENGTH test_ref len_ref) - math (EXPR _FP_LEN "${len_ref} - 1") - if (len_act GREATER 0 AND len_ref GREATER 0) + # now compare the error output with the error reference + execute_process ( + COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT}.err ${TEST_FOLDER}/${TEST_ERRREF} + RESULT_VARIABLE TEST_ERRREF_RESULT + ) + if (TEST_ERRREF_RESULT) + set (TEST_ERRREF_RESULT 0) + file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT}.err test_act) + list (LENGTH test_act len_act) + file (STRINGS ${TEST_FOLDER}/${TEST_ERRREF} test_ref) + list (LENGTH test_ref len_ref) math (EXPR _FP_LEN "${len_ref} - 1") - foreach (line RANGE 0 ${_FP_LEN}) - list (GET test_act ${line} str_act) - list (GET test_ref ${line} str_ref) - if (NOT str_act STREQUAL str_ref) - if (str_act) - set (TEST_RESULT 1) - message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n") + if (len_act GREATER 0 AND len_ref GREATER 0) + math (EXPR _FP_LEN "${len_ref} - 1") + foreach (line RANGE 0 ${_FP_LEN}) + list (GET test_act ${line} str_act) + list (GET test_ref ${line} str_ref) + if (NOT str_act STREQUAL str_ref) + if (str_act) + set (TEST_ERRREF_RESULT 1) + message (STATUS "line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n") + endif () endif () + endforeach () + else () + if (len_act EQUAL 0) + message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT}.err is empty") + endif () + if (len_ref EQUAL 0) + message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_ERRREF} is empty") endif () - endforeach () - else () - if (len_act EQUAL 0) - message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT}.err is empty") endif () - if (len_ref EQUAL 0) - message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_ERRREF} is empty") + if (NOT len_act EQUAL len_ref) + set (TEST_ERRREF_RESULT 1) endif () endif () - if (NOT len_act EQUAL len_ref) - set (TEST_RESULT 1) - endif () endif () - message (STATUS "COMPARE Result: ${TEST_RESULT}") + message (STATUS "COMPARE Result: ${TEST_ERRREF_RESULT}") # again, if return value is !=0 scream and shout - if (TEST_RESULT) + if (TEST_ERRREF_RESULT) message (FATAL_ERROR "Failed: The error output of ${TEST_OUTPUT}.err did not match ${TEST_ERRREF}") endif () endif () endif () +set (TEST_GREP_RESULT 0) if (TEST_GREP_COMPARE) # now grep the output with the reference file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM) + list(LENGTH TEST_STREAM test_len) + if (test_len GREATER 0) + # TEST_REFERENCE should always be matched + string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM}) + string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_GREP_RESULT) + if (NOT TEST_GREP_RESULT) + message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}") + endif () - # TEST_REFERENCE should always be matched - string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM}) - string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT) - if (NOT TEST_RESULT) - message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}") - endif () - - string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM}) - if (TEST_EXPECT) - # TEST_EXPECT (1) interprets TEST_FILTER as; NOT to match - string (LENGTH "${TEST_MATCH}" TEST_RESULT) - if (TEST_RESULT) - message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}") + string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM}) + if (TEST_EXPECT) + # TEST_EXPECT (1) interprets TEST_FILTER as; NOT to match + string (LENGTH "${TEST_MATCH}" TEST_GREP_RESULT) + if (TEST_GREP_RESULT) + message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}") + endif () endif () endif () endif () diff --git a/config/gnu-flags b/config/gnu-flags index a5f3258..eaa30a9 100644 --- a/config/gnu-flags +++ b/config/gnu-flags @@ -235,7 +235,9 @@ if test "X-gcc" = "X-$cc_vendor"; then # gcc 4.5 if test $cc_vers_major -ge 5 -o $cc_vers_major -eq 4 -a $cc_vers_minor -ge 5; then - H5_CFLAGS="$H5_CFLAGS -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants" + H5_CFLAGS="$H5_CFLAGS -Wstrict-overflow=5 -Wjump-misses-init" + DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wunsuffixed-float-constants" + NO_DEVELOPER_WARNING_CFLAGS="$NO_DEVELOPER_WARNING_CFLAGS -Wno-unsuffixed-float-constants" fi # gcc 4.6 diff --git a/config/linux-gnueabihf b/config/linux-gnueabihf new file mode 100644 index 0000000..326edeb --- /dev/null +++ b/config/linux-gnueabihf @@ -0,0 +1,16 @@ +# -*- shell-script -*- +# +# Copyright by The HDF Group. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the COPYING file, which can be found at the root of the source code +# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# If you do not have access to either file, you may request a copy from +# help@hdfgroup.org. + +# ARM for Raspberry Pi, etc. +# This is the same as linux-gnulibc1 + +. $srcdir/config/linux-gnulibc1 diff --git a/examples/CMakeLists.txt b/examples/CMakeLists.txt index 9f42f95..89cafc8 100644 --- a/examples/CMakeLists.txt +++ b/examples/CMakeLists.txt @@ -67,6 +67,6 @@ if (H5_HAVE_PARALLEL) set_target_properties (ph5example PROPERTIES FOLDER examples) endif () -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_EXAMPLES) include (CMakeTests.cmake) endif () diff --git a/examples/CMakeTests.cmake b/examples/CMakeTests.cmake index ea3b2c5..fd7f1dc 100644 --- a/examples/CMakeTests.cmake +++ b/examples/CMakeTests.cmake @@ -64,38 +64,40 @@ set (test_ex_CLEANFILES vds-eiger.h5 ) -# Remove any output file left over from previous test run -add_test ( - NAME EXAMPLES-clear-objects - COMMAND ${CMAKE_COMMAND} -E remove ${test_ex_CLEANFILES} -) -set_tests_properties (EXAMPLES-clear-objects PROPERTIES FIXTURES_SETUP clear_EXAMPLES) +if (HDF5_TEST_SERIAL) + # Remove any output file left over from previous test run + add_test ( + NAME EXAMPLES-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove ${test_ex_CLEANFILES} + ) + set_tests_properties (EXAMPLES-clear-objects PROPERTIES FIXTURES_SETUP clear_EXAMPLES) -foreach (example ${examples}) - if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME EXAMPLES-${example} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:${example}>) - else () - add_test (NAME EXAMPLES-${example} COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:${example}>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=${example}.txt" - #-D "TEST_REFERENCE=${example}.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" - ) - endif () - set_tests_properties (EXAMPLES-${example} PROPERTIES FIXTURES_REQUIRED clear_EXAMPLES) - if (last_test) - set_tests_properties (EXAMPLES-${example} PROPERTIES DEPENDS ${last_test}) - endif () - set (last_test "EXAMPLES-${example}") -endforeach () + foreach (example ${examples}) + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME EXAMPLES-${example} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:${example}>) + else () + add_test (NAME EXAMPLES-${example} COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:${example}>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=${example}.txt" + #-D "TEST_REFERENCE=${example}.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + set_tests_properties (EXAMPLES-${example} PROPERTIES FIXTURES_REQUIRED clear_EXAMPLES) + if (last_test) + set_tests_properties (EXAMPLES-${example} PROPERTIES DEPENDS ${last_test}) + endif () + set (last_test "EXAMPLES-${example}") + endforeach () +endif () ### Windows pops up a modal permission dialog on this test -if (H5_HAVE_PARALLEL AND NOT WIN32) +if (H5_HAVE_PARALLEL AND HDF5_TEST_PARALLEL AND NOT WIN32) if (HDF5_ENABLE_USING_MEMCHECKER) add_test (NAME MPI_TEST_EXAMPLES-ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:ph5example> ${MPIEXEC_POSTFLAGS}) else () diff --git a/examples/h5_attribute.c b/examples/h5_attribute.c index e3b5759..0e275c7 100644 --- a/examples/h5_attribute.c +++ b/examples/h5_attribute.c @@ -60,7 +60,7 @@ main (void) float matrix[ADIM1][ADIM2]; /* Attribute data */ herr_t ret; /* Return value */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ unsigned i, j; /* Counters */ char string_out[80]; /* Buffer to read string attribute back */ int point_out; /* Buffer to read scalar attribute back */ @@ -189,7 +189,7 @@ main (void) /* * Find string attribute by iterating through all attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_ALL); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); for(i = 0; i < (unsigned)oinfo.num_attrs; i++) { attr = H5Aopen_by_idx(dataset, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)i, H5P_DEFAULT, H5P_DEFAULT); atype = H5Aget_type(attr); diff --git a/examples/h5_extlink.c b/examples/h5_extlink.c index 229e465..fea1fa2 100644 --- a/examples/h5_extlink.c +++ b/examples/h5_extlink.c @@ -316,7 +316,7 @@ static void hard_link_example(void) { hid_t file_id; hid_t group_id; - H5L_info_t li; + H5L_info2_t li; /* Define the link class that we'll use to register "user-defined hard * links" using the callbacks we defined above. * A link class can have NULL for any callback except its traverse @@ -361,13 +361,13 @@ static void hard_link_example(void) * the target group's address. We do this by calling H5Lget_info * on a hard link to the object. */ - H5Lget_info(file_id, TARGET_GROUP, &li, H5P_DEFAULT); + H5Lget_info2(file_id, TARGET_GROUP, &li, H5P_DEFAULT); /* Now create a user-defined link. We give it the group's address * as its udata. */ - H5Lcreate_ud(file_id, UD_HARD_LINK_NAME, (H5L_type_t)UD_HARD_CLASS, &(li.u.address), - sizeof(li.u.address), H5P_DEFAULT, H5P_DEFAULT); + H5Lcreate_ud(file_id, UD_HARD_LINK_NAME, (H5L_type_t)UD_HARD_CLASS, &(li.u.token), + sizeof(H5O_token_t), H5P_DEFAULT, H5P_DEFAULT); /* The UD hard link has now incremented the group's reference count * like a normal hard link would. This means that we can unlink the @@ -404,23 +404,23 @@ static void hard_link_example(void) static herr_t UD_hard_create(const char *link_name, hid_t loc_group, const void *udata, size_t udata_size, hid_t lcpl_id) { - haddr_t addr; - hid_t target_obj = -1; + H5O_token_t token; + hid_t target_obj = H5I_INVALID_HID; herr_t ret_value = 0; /* Make sure that the address passed in looks valid */ - if(udata_size != sizeof(haddr_t)) + if(udata_size != sizeof(H5O_token_t)) { ret_value = -1; goto done; } - addr = *((const haddr_t *) udata); + token = *((H5O_token_t *) udata); /* Open the object this link points to so that we can increment - * its reference count. This also ensures that the address passed + * its reference count. This also ensures that the token passed * in points to a real object (although this check is not perfect!) */ - target_obj= H5Oopen_by_addr(loc_group, addr); + target_obj = H5Oopen_by_token(loc_group, token); if(target_obj < 0) { ret_value = -1; @@ -448,23 +448,23 @@ done: static herr_t UD_hard_delete(const char *link_name, hid_t loc_group, const void *udata, size_t udata_size) { - haddr_t addr; - hid_t target_obj = -1; + H5O_token_t token; + hid_t target_obj = H5I_INVALID_HID; herr_t ret_value = 0; /* Sanity check; we have already verified the udata's size in the creation * callback. */ - if(udata_size != sizeof(haddr_t)) + if(udata_size != sizeof(H5O_token_t)) { ret_value = -1; goto done; } - addr = *((const haddr_t *) udata); + token = *((H5O_token_t *) udata); /* Open the object this link points to */ - target_obj= H5Oopen_by_addr(loc_group, addr); + target_obj = H5Oopen_by_token(loc_group, token); if(target_obj < 0) { ret_value = -1; @@ -492,21 +492,21 @@ done: static hid_t UD_hard_traverse(const char *link_name, hid_t cur_group, const void *udata, size_t udata_size, hid_t lapl_id, hid_t dxpl_id) { - haddr_t addr; - hid_t ret_value = -1; + H5O_token_t token; + hid_t ret_value = H5I_INVALID_HID; /* Sanity check; we have already verified the udata's size in the creation * callback. */ - if(udata_size != sizeof(haddr_t)) - return -1; + if(udata_size != sizeof(H5O_token_t)) + return H5I_INVALID_HID; - addr = *((const haddr_t *) udata); + token = *((H5O_token_t *) udata); - /* Open the object by address. If H5Oopen_by_addr fails, ret_value will + /* Open the object by token. If H5Oopen_by_token fails, ret_value will * be negative to indicate that the traversal function failed. */ - ret_value = H5Oopen_by_addr(cur_group, addr); + ret_value = H5Oopen_by_token(cur_group, token); return ret_value; } @@ -621,7 +621,7 @@ static hid_t UD_plist_traverse(const char *link_name, hid_t cur_group, const void *udata, size_t udata_size, hid_t lapl_id, hid_t dxpl_id) { char * path; - hid_t ret_value = -1; + hid_t ret_value = H5I_INVALID_HID; /* If the link property isn't set or can't be found, traversal fails. */ if(H5Pexist(lapl_id, PLIST_LINK_PROP) < 0) @@ -638,7 +638,7 @@ static hid_t UD_plist_traverse(const char *link_name, hid_t cur_group, return ret_value; error: - return -1; + return H5I_INVALID_HID; } diff --git a/examples/h5_group.c b/examples/h5_group.c index 8e89165..75bed91 100644 --- a/examples/h5_group.c +++ b/examples/h5_group.c @@ -26,9 +26,9 @@ #define H5FILE_NAME "group.h5" #define RANK 2 -static herr_t file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, +static herr_t file_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *opdata); /* Link iteration operator function */ -static herr_t group_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, +static herr_t group_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *opdata); /* Link iteration operator function */ int main(void) @@ -135,7 +135,7 @@ main(void) /* * Use iterator to see the names of the objects in the root group. */ - idx_f = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL); + idx_f = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL); /* * Unlink name "Data" and use iterator to see the names @@ -146,13 +146,13 @@ main(void) else printf("\"Data\" is unlinked \n"); - idx_f = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL); + idx_f = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL); /* * Use iterator to see the names of the objects in the group * /Data_new. */ - idx_g = H5Literate_by_name(grp, "/Data_new", H5_INDEX_NAME, H5_ITER_INC, NULL, group_info, NULL, H5P_DEFAULT); + idx_g = H5Literate_by_name2(grp, "/Data_new", H5_INDEX_NAME, H5_ITER_INC, NULL, group_info, NULL, H5P_DEFAULT); /* * Close the file. @@ -168,7 +168,7 @@ main(void) * Operator function. */ static herr_t -file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *opdata) +file_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *opdata) { /* avoid compiler warnings */ loc_id = loc_id; @@ -189,7 +189,7 @@ file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *opdata) * Operator function. */ static herr_t -group_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *opdata) +group_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *opdata) { hid_t did; /* dataset identifier */ hid_t tid; /* datatype identifier */ diff --git a/examples/testh5cc.sh.in b/examples/testh5cc.sh.in index 800d4d4..40ca466 100644 --- a/examples/testh5cc.sh.in +++ b/examples/testh5cc.sh.in @@ -308,8 +308,8 @@ echo "***"Version compatibility tests. # If H5_NO_DEPRECATED_SYMBOLS; # then only v18main works. # else if H5_USE_16_API_DEFAULT; -# then v16main works and -DH5_NO_DEPRECATED_SYMBOLS v18main also works. -# else v18main works and -DH5_USE_16_API_DEFAULT v16main also works. +# then v16main works. +# else v18main works and -DH5_USE_16_API_DEFAULT v16main also works. # if [ -n "$H5_USE_16_API_DEFAULT" ]; then echo "H5_USE_16_API_DEFAULT is defined." @@ -326,7 +326,6 @@ if [ -n "$H5_NO_DEPRECATED_SYMBOLS" ]; then TOOLTEST $v18main elif [ -n "$H5_USE_16_API_DEFAULT" ]; then TOOLTEST $v16main - TOOLTEST -DH5_NO_DEPRECATED_SYMBOLS $v18main else TOOLTEST -DH5_USE_16_API_DEFAULT $v16main TOOLTEST $v18main diff --git a/fortran/examples/CMakeLists.txt b/fortran/examples/CMakeLists.txt index e8dddd3..be98963 100644 --- a/fortran/examples/CMakeLists.txt +++ b/fortran/examples/CMakeLists.txt @@ -173,6 +173,6 @@ if (H5_HAVE_PARALLEL AND MPI_Fortran_FOUND) endif () endif () -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_FORTRAN AND HDF5_TEST_EXAMPLES) include (CMakeTests.cmake) endif () diff --git a/fortran/examples/CMakeTests.cmake b/fortran/examples/CMakeTests.cmake index 5e7dfa8..a52375b 100644 --- a/fortran/examples/CMakeTests.cmake +++ b/fortran/examples/CMakeTests.cmake @@ -16,77 +16,79 @@ ############################################################################## ############################################################################## -set (test_ex_fortran_CLEANFILES - compound.h5 - copy1.h5 - copy2.h5 - dsetf.h5 - extend.h5 - FORTRAN.h5 - groupf.h5 - groupsf.h5 - h5_cmprss.h5 - mount1.h5 - mount2.h5 - sdsf.h5 - subset.h5 - SDScompound.h5 - test.h5 -) +if (HDF5_TEST_SERIAL) + set (test_ex_fortran_CLEANFILES + compound.h5 + copy1.h5 + copy2.h5 + dsetf.h5 + extend.h5 + FORTRAN.h5 + groupf.h5 + groupsf.h5 + h5_cmprss.h5 + mount1.h5 + mount2.h5 + sdsf.h5 + subset.h5 + SDScompound.h5 + test.h5 + ) -# Remove any output file left over from previous test run -add_test ( - NAME f90_ex-clear-objects - COMMAND ${CMAKE_COMMAND} -E remove ${test_ex_fortran_CLEANFILES} -) -set_tests_properties (f90_ex-clear-objects PROPERTIES FIXTURES_SETUP clear_f90_ex) + # Remove any output file left over from previous test run + add_test ( + NAME f90_ex-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove ${test_ex_fortran_CLEANFILES} + ) + set_tests_properties (f90_ex-clear-objects PROPERTIES FIXTURES_SETUP clear_f90_ex) -foreach (example ${examples}) - if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME f90_ex_${example} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:f90_ex_${example}>) - else () - add_test (NAME f90_ex_${example} COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:f90_ex_${example}>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=f90_ex_${example}.txt" - #-D "TEST_REFERENCE=f90_ex_${example}.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" - ) - endif () - set_tests_properties (f90_ex_${example} PROPERTIES FIXTURES_REQUIRED clear_f90_ex) - if (last_test) - set_tests_properties (f90_ex_${example} PROPERTIES DEPENDS ${last_test}) - endif () - set (last_test "f90_ex_${example}") -endforeach () + foreach (example ${examples}) + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME f90_ex_${example} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:f90_ex_${example}>) + else () + add_test (NAME f90_ex_${example} COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:f90_ex_${example}>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=f90_ex_${example}.txt" + #-D "TEST_REFERENCE=f90_ex_${example}.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + set_tests_properties (f90_ex_${example} PROPERTIES FIXTURES_REQUIRED clear_f90_ex) + if (last_test) + set_tests_properties (f90_ex_${example} PROPERTIES DEPENDS ${last_test}) + endif () + set (last_test "f90_ex_${example}") + endforeach () -foreach (example ${F2003_examples}) - if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME f03_ex_${example} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:f03_ex_${example}>) - else () - add_test (NAME f03_ex_${example} COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:f03_ex_${example}>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=f03_ex_${example}.txt" - #-D "TEST_REFERENCE=f03_ex_${example}.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" - ) - endif () - set_tests_properties (f03_ex_${example} PROPERTIES FIXTURES_REQUIRED clear_f90_ex) - if (last_test) - set_tests_properties (f03_ex_${example} PROPERTIES DEPENDS ${last_test}) - endif () - set (last_test "f03_ex_${example}") -endforeach () + foreach (example ${F2003_examples}) + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME f03_ex_${example} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:f03_ex_${example}>) + else () + add_test (NAME f03_ex_${example} COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:f03_ex_${example}>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=f03_ex_${example}.txt" + #-D "TEST_REFERENCE=f03_ex_${example}.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + set_tests_properties (f03_ex_${example} PROPERTIES FIXTURES_REQUIRED clear_f90_ex) + if (last_test) + set_tests_properties (f03_ex_${example} PROPERTIES DEPENDS ${last_test}) + endif () + set (last_test "f03_ex_${example}") + endforeach () +endif () -if (H5_HAVE_PARALLEL AND MPI_Fortran_FOUND) +if (H5_HAVE_PARALLEL AND HDF5_TEST_PARALLEL AND MPI_Fortran_FOUND) add_test (NAME MPI_TEST_f90_ex_ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:f90_ex_ph5example> ${MPIEXEC_POSTFLAGS}) endif () diff --git a/fortran/src/H5Af.c b/fortran/src/H5Af.c index 31a18fc..5e5bcc0 100644 --- a/fortran/src/H5Af.c +++ b/fortran/src/H5Af.c @@ -137,13 +137,13 @@ int_f h5aget_num_attrs_c (hid_t_f *obj_id, int_f *attr_num) /******/ { - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ int_f ret_value = 0; /* Return value */ /* * Call H5Oget_info function. */ - if(H5Oget_info2((hid_t)*obj_id, &oinfo, H5O_INFO_NUM_ATTRS) < 0) + if(H5Oget_info3((hid_t)*obj_id, &oinfo, H5O_INFO_NUM_ATTRS) < 0) HGOTO_DONE(FAIL); /* Set number of attributes */ diff --git a/fortran/src/H5Gf.c b/fortran/src/H5Gf.c index def67e1..770752d 100644 --- a/fortran/src/H5Gf.c +++ b/fortran/src/H5Gf.c @@ -170,7 +170,7 @@ h5gget_obj_info_idx_c(hid_t_f *loc_id, _fcd name, int_f *namelen, int_f *idx, _fcd obj_name, int_f *obj_namelen, int_f *obj_type) /******/ { - H5O_info_t oinfo; + H5O_info2_t oinfo; hid_t c_loc_id = (hid_t)*loc_id; char *c_name = NULL; size_t c_obj_namelen; @@ -200,7 +200,7 @@ h5gget_obj_info_idx_c(hid_t_f *loc_id, _fcd name, int_f *namelen, int_f *idx, /* Query the object's information */ if(H5Lget_name_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, c_idx, c_obj_name, c_obj_namelen, H5P_DEFAULT) < 0) goto DONE; - if(H5Oget_info_by_idx2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, c_idx, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_idx3(gid, ".", H5_INDEX_NAME, H5_ITER_INC, c_idx, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) goto DONE; /* XXX: Switch from using H5Gget_objtype_by_idx() means that this routine won't diff --git a/fortran/src/H5Lf.c b/fortran/src/H5Lf.c index 31fedfd..b5ff7f2 100644 --- a/fortran/src/H5Lf.c +++ b/fortran/src/H5Lf.c @@ -441,7 +441,7 @@ done: * H5L_LINK_SOFT_F - Soft link * H5L_LINK_EXTERNAL_F - External link * H5L_LINK_ERROR_F - Error - * address - If the link is a hard link, address specifies the file address that the link points to + * token - If the link is a hard link, token specifies the token for the object that the link points to * val_size - If the link is a symbolic link, val_size will be the length of the link value * * RETURNS @@ -456,13 +456,12 @@ done: int_f h5lget_info_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, int_f *cset, int_f *corder, int_f *corder_valid, int_f *link_type, - haddr_t_f *address, size_t_f *val_size, - hid_t_f *lapl_id) + H5O_token_t *token, size_t_f *val_size, hid_t_f *lapl_id) /******/ { char *c_link_name = NULL; /* Buffer to hold C string */ int_f ret_value = 0; /* Return value */ - H5L_info_t link_buff; + H5L_info2_t link_buff; /* * Convert FORTRAN name to C name @@ -473,7 +472,7 @@ h5lget_info_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, /* * Call H5Linfo function. */ - if(H5Lget_info((hid_t)*link_loc_id, c_link_name, &link_buff, (hid_t)*lapl_id) < 0) + if(H5Lget_info2((hid_t)*link_loc_id, c_link_name, &link_buff, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); /* Unpack the structure */ @@ -482,7 +481,7 @@ h5lget_info_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, *corder_valid = 0; if(link_buff.corder_valid > 0) *corder_valid = 1; *link_type = (int_f)link_buff.type; - *address = (haddr_t_f)link_buff.u.address; + *token = link_buff.u.token; *val_size = (size_t_f)link_buff.u.val_size; done: @@ -525,14 +524,15 @@ done: int_f h5lget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen, int_f *index_field, int_f *order, hsize_t_f *n, - int_f *link_type, int_f *corder_valid, int_f *corder, int_f *cset, haddr_t_f *address, size_t_f *val_size, hid_t_f *lapl_id) + int_f *link_type, int_f *corder_valid, int_f *corder, + int_f *cset, H5O_token_t *token, size_t_f *val_size, hid_t_f *lapl_id) /******/ { char *c_group_name = NULL; /* Buffer to hold C string */ H5_index_t c_index_field; H5_iter_order_t c_order; int_f ret_value = 0; /* Return value */ - H5L_info_t link_buff; + H5L_info2_t link_buff; /* * Convert FORTRAN name to C name @@ -545,7 +545,7 @@ h5lget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen, /* * Call H5Linfo_by_idx function. */ - if(H5Lget_info_by_idx((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, + if(H5Lget_info_by_idx2((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, &link_buff, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); @@ -557,7 +557,7 @@ h5lget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen, *corder = (int_f)link_buff.corder; *cset = (int_f)link_buff.cset; *link_type = (int_f)link_buff.type; - *address = (haddr_t_f)link_buff.u.address; + *token = link_buff.u.token; *val_size = (size_t_f)link_buff.u.val_size; done: @@ -988,7 +988,7 @@ done: * SOURCE */ int_f -h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate_t op, void *op_data ) +h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate2_t op, void *op_data ) /******/ { int_f ret_value = -1; /* Return value */ @@ -1001,7 +1001,7 @@ h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, * Call H5Linterate */ - func_ret_value = H5Literate( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, &idx_c, op, op_data); + func_ret_value = H5Literate2( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, &idx_c, op, op_data); ret_value = (int_f)func_ret_value; *idx = (hsize_t_f)idx_c; @@ -1038,7 +1038,7 @@ h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, * SOURCE */ int_f -h5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate_t op, void *op_data, hid_t_f *lapl_id) +h5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate2_t op, void *op_data, hid_t_f *lapl_id) /******/ { int_f ret_value = -1; /* Return value */ @@ -1058,7 +1058,7 @@ h5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index * Call H5Linterate */ - func_ret_value = H5Literate_by_name((hid_t)*loc_id, c_name,(H5_index_t)*index_type,(H5_iter_order_t)*order,&idx_c,op,op_data,(hid_t)*lapl_id); + func_ret_value = H5Literate_by_name2((hid_t)*loc_id, c_name,(H5_index_t)*index_type,(H5_iter_order_t)*order,&idx_c,op,op_data,(hid_t)*lapl_id); ret_value = (int_f)func_ret_value; *idx = (hsize_t_f)idx_c; diff --git a/fortran/src/H5Lff.F90 b/fortran/src/H5Lff.F90 index d5bb1d1..f672547 100644 --- a/fortran/src/H5Lff.F90 +++ b/fortran/src/H5Lff.F90 @@ -46,7 +46,7 @@ MODULE H5L ! Fortran2003 Derived Type: ! TYPE, bind(c) :: union_t - INTEGER(haddr_t) :: address + TYPE(H5O_TOKEN_T_F) :: token INTEGER(size_t) :: val_size END TYPE union_t @@ -604,7 +604,7 @@ CONTAINS ! H5L_TYPE_SOFT_F - Soft link ! H5L_TYPE_EXTERNAL_F - External link ! H5L_TYPE_ERROR_ F - Error -! address - If the link is a hard link, address specifies the file address that the link points to +! token - If the link is a hard link, token specifies the object token that the link points to ! val_size - If the link is a symbolic link, val_size will be the length of the link value, e.g., ! the length of the name of the pointed-to object with a null terminator. ! hdferr - Returns 0 if successful and -1 if fails @@ -625,7 +625,7 @@ CONTAINS ! ! SOURCE SUBROUTINE h5lget_info_f(link_loc_id, link_name, & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & hdferr, lapl_id) IMPLICIT NONE @@ -641,7 +641,7 @@ CONTAINS ! H5L_TYPE_SOFT_F - Soft link ! H5L_TYPE_EXTERNAL_F - External link ! H5L_TYPE_ERROR _F - Error - INTEGER(HADDR_T), INTENT(OUT) :: address ! If the link is a hard link, address specifies the file address that the link points to + TYPE(H5O_TOKEN_T_F), INTENT(OUT), TARGET :: token ! If the link is a hard link, token specifies the object token that the link points to INTEGER(SIZE_T), INTENT(OUT) :: val_size ! If the link is a symbolic link, val_size will be the length of the link value, e.g., ! the length of the name of the pointed-to object with a null terminator. INTEGER, INTENT(OUT) :: hdferr ! Error code: @@ -654,17 +654,17 @@ CONTAINS INTERFACE INTEGER FUNCTION h5lget_info_c(link_loc_id, link_name, link_namelen, & - cset, corder, corder_valid, link_type, address, val_size, & + cset, corder, corder_valid, link_type, token, val_size, & lapl_id_default) BIND(C,NAME='h5lget_info_c') IMPORT :: c_char - IMPORT :: HID_T, SIZE_T, HADDR_T + IMPORT :: HID_T, SIZE_T, H5O_TOKEN_T_F IMPLICIT NONE INTEGER(HID_T), INTENT(IN) :: link_loc_id CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: link_name INTEGER, INTENT(OUT) :: cset INTEGER, INTENT(OUT) :: corder INTEGER, INTENT(OUT) :: link_type - INTEGER(HADDR_T), INTENT(OUT) :: address + TYPE(H5O_TOKEN_T_F), INTENT(OUT) :: token INTEGER(SIZE_T), INTENT(OUT) :: val_size INTEGER(HID_T) :: lapl_id_default INTEGER(SIZE_T) :: link_namelen @@ -677,10 +677,8 @@ CONTAINS lapl_id_default = H5P_DEFAULT_F IF(PRESENT(lapl_id)) lapl_id_default = lapl_id - hdferr = h5lget_info_c(link_loc_id, link_name, link_namelen, & - cset, corder, corder_valid, link_type, & - address, val_size, & - lapl_id_default) + hdferr = h5lget_info_c(link_loc_id, link_name, link_namelen, cset, & + corder, corder_valid, link_type, token, val_size, lapl_id_default) f_corder_valid =.FALSE. IF(corder_valid .EQ. 1) f_corder_valid =.TRUE. @@ -708,8 +706,8 @@ CONTAINS ! corder_valid - Indicates whether the creation order data is valid for this attribute ! corder - Is a positive integer containing the creation order of the attribute ! cset - Indicates the character set used for the attribute’s name -! address - If the link is a hard link, address specifies the file address that the link points to -! val_size - If the link is a symbolic link, val_size will be the length of the link value, e.g., +! token - If the link is a hard link, token specifies the object token that the link points to +! val_size - If the link is a symbolic link, val_size will be the length of the link value, e.g., ! the length of the name of the pointed-to object with a null terminator. ! hdferr - Returns 0 if successful and -1 if fails ! @@ -729,7 +727,7 @@ CONTAINS ! ! SOURCE SUBROUTINE h5lget_info_by_idx_f(loc_id, group_name, index_field, order, n, & - link_type, f_corder_valid, corder, cset, address, val_size, hdferr, lapl_id) + link_type, f_corder_valid, corder, cset, token, val_size, hdferr, lapl_id) IMPLICIT NONE INTEGER(HID_T), INTENT(IN) :: loc_id ! File or group identifier specifying location of subject group CHARACTER(LEN=*), INTENT(IN) :: group_name ! Name of subject group @@ -752,7 +750,7 @@ CONTAINS LOGICAL, INTENT(OUT) :: f_corder_valid ! Indicates whether the creation order data is valid for this attribute INTEGER, INTENT(OUT) :: corder ! Is a positive integer containing the creation order of the attribute INTEGER, INTENT(OUT) :: cset ! Indicates the character set used for the attribute’s name - INTEGER(HADDR_T), INTENT(OUT) :: address ! If the link is a hard link, address specifies the file address that the link points to + TYPE(H5O_TOKEN_T_F), INTENT(OUT), TARGET :: token ! If the link is a hard link, token specifies the object token that the link points to INTEGER(SIZE_T), INTENT(OUT) :: val_size ! If the link is a symbolic link, val_size will be the length of the link value, e.g., ! the length of the name of the pointed-to object with a null terminator. INTEGER, INTENT(OUT) :: hdferr ! Error code: @@ -767,10 +765,10 @@ CONTAINS ! INTERFACE INTEGER FUNCTION h5lget_info_by_idx_c(loc_id, group_name, group_namelen, index_field, order, n, & - link_type, corder_valid, corder, cset, address, val_size, lapl_id_default) & + link_type, corder_valid, corder, cset, token, val_size, lapl_id_default) & BIND(C,NAME='h5lget_info_by_idx_c') IMPORT :: c_char - IMPORT :: HID_T, SIZE_T, HSIZE_T, HADDR_T + IMPORT :: HID_T, SIZE_T, HSIZE_T, H5O_TOKEN_T_F IMPLICIT NONE INTEGER(HID_T), INTENT(IN) :: loc_id CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: group_name @@ -779,10 +777,10 @@ CONTAINS INTEGER, INTENT(IN) :: order INTEGER(HSIZE_T), INTENT(IN) :: n INTEGER, INTENT(OUT) :: link_type - INTEGER :: corder_valid + INTEGER :: corder_valid INTEGER, INTENT(OUT) :: corder INTEGER, INTENT(OUT) :: cset - INTEGER(HADDR_T), INTENT(OUT) :: address + TYPE(H5O_TOKEN_T_F), INTENT(OUT) :: token INTEGER(SIZE_T), INTENT(OUT) :: val_size INTEGER(HID_T) :: lapl_id_default END FUNCTION h5lget_info_by_idx_c @@ -794,7 +792,7 @@ CONTAINS IF(PRESENT(lapl_id)) lapl_id_default = lapl_id hdferr = h5lget_info_by_idx_c(loc_id, group_name, group_namelen, index_field, order, n, & - link_type, corder_valid, corder, cset, address, val_size, lapl_id_default) + link_type, corder_valid, corder, cset, token, val_size, lapl_id_default) f_corder_valid =.FALSE. IF (corder_valid .EQ. 1) f_corder_valid =.TRUE. diff --git a/fortran/src/H5Of.c b/fortran/src/H5Of.c index 08305ea..9780814 100644 --- a/fortran/src/H5Of.c +++ b/fortran/src/H5Of.c @@ -22,10 +22,10 @@ #include "H5f90.h" #include "H5Eprivate.h" int_f -fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info); +fill_h5o_info_t_f(H5O_info2_t Oinfo, H5O_info_t_f *object_info); int_f -fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) { +fill_h5o_info_t_f(H5O_info2_t Oinfo, H5O_info_t_f *object_info) { /* This function does not used the field parameter because we want * this function to fill the unfilled fields with C's default values. @@ -34,7 +34,7 @@ fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) { struct tm *ts; object_info->fileno = Oinfo.fileno; - object_info->addr = (haddr_t_f)Oinfo.addr; + object_info->token = Oinfo.token; object_info->type = (int_f)Oinfo.type; object_info->rc = (int_f)Oinfo.rc; @@ -85,24 +85,6 @@ fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) { object_info->num_attrs = (hsize_t_f)Oinfo.num_attrs; - object_info->hdr.version = (int_f)Oinfo.hdr.version; - object_info->hdr.nmesgs = (int_f)Oinfo.hdr.nmesgs; - object_info->hdr.nchunks = (int_f)Oinfo.hdr.nchunks; - object_info->hdr.flags = (int_f)Oinfo.hdr.flags; - - object_info->hdr.space.total = (hsize_t_f)Oinfo.hdr.space.total; - object_info->hdr.space.meta = (hsize_t_f)Oinfo.hdr.space.meta; - object_info->hdr.space.mesg = (hsize_t_f)Oinfo.hdr.space.mesg; - object_info->hdr.space.free = (hsize_t_f)Oinfo.hdr.space.free; - - object_info->hdr.mesg.present = Oinfo.hdr.mesg.present; - object_info->hdr.mesg.shared = Oinfo.hdr.mesg.shared; - - object_info->meta_size.obj.index_size = (hsize_t_f)Oinfo.meta_size.obj.index_size; - object_info->meta_size.obj.heap_size = (hsize_t_f)Oinfo.meta_size.obj.heap_size; - object_info->meta_size.attr.index_size = (hsize_t_f)Oinfo.meta_size.attr.index_size; - object_info->meta_size.attr.heap_size = (hsize_t_f)Oinfo.meta_size.attr.heap_size; - return 0; } @@ -248,34 +230,35 @@ h5oclose_c ( hid_t_f *object_id ) * SOURCE */ int_f -h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data, int_f *fields ) +h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate2_t op, + void *op_data, int_f *fields ) /******/ { int_f ret_value = -1; /* Return value */ herr_t func_ret_value; /* H5Linterate return value */ /* - * Call H5Ovisit2 + * Call H5Ovisit */ - func_ret_value = H5Ovisit2( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, (unsigned)*fields); + func_ret_value = H5Ovisit3( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, (unsigned)*fields); ret_value = (int_f)func_ret_value; return ret_value; } -/****if* H5Of/h5oopen_by_addr_c +/****if* H5Of/h5oopen_by_token_c * NAME - * h5oopen_by_addr_c + * h5oopen_by_token_c * PURPOSE - * Calls H5open_by_addr + * Calls H5open_by_token * INPUTS - * loc_id - File or group identifier - * addr - Object’s address in the file + * loc_id - File or group identifier + * token - Object’s token in the file * * OUTPUTS - * obj_id - Dataset identifier + * obj_id - Object identifier * * RETURNS * 0 on success, -1 on failure @@ -285,15 +268,15 @@ h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, * SOURCE */ int_f -h5oopen_by_addr_c (hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id) +h5oopen_by_token_c(hid_t_f *loc_id, H5O_token_t *token, hid_t_f *obj_id) /******/ { int_f ret_value = 0; /* Return value */ /* - * Call H5Oopen_by_address function. + * Call H5Oopen_by_token function. */ - if((*obj_id = (hid_t_f)H5Oopen_by_addr((hid_t)*loc_id, (haddr_t)*addr)) < 0) + if((*obj_id = (hid_t_f)H5Oopen_by_token((hid_t)*loc_id, *token)) < 0) HGOTO_DONE(FAIL); done: @@ -328,7 +311,7 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l { char *c_name = NULL; /* Buffer to hold C string */ int_f ret_value = 0; /* Return value */ - H5O_info_t Oinfo; + H5O_info2_t Oinfo; /* * Convert FORTRAN name to C name @@ -339,7 +322,7 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l /* * Call H5Oinfo_by_name function. */ - if(H5Oget_info_by_name2((hid_t)*loc_id, c_name, + if(H5Oget_info_by_name3((hid_t)*loc_id, c_name, &Oinfo, (unsigned)*fields, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); @@ -379,10 +362,10 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, { char *c_group_name = NULL; /* Buffer to hold C string */ int_f ret_value = 0; /* Return value */ - H5O_info_t Oinfo; + H5O_info2_t Oinfo; H5_index_t c_index_field; H5_iter_order_t c_order; - + /* * Convert FORTRAN name to C name */ @@ -395,7 +378,7 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, /* * Call H5Oinfo_by_idx function. */ - if(H5Oget_info_by_idx2((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, + if(H5Oget_info_by_idx3((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, &Oinfo, (unsigned)*fields, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); @@ -430,12 +413,12 @@ h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info, int_f *fields) /******/ { int_f ret_value = 0; /* Return value */ - H5O_info_t Oinfo; - + H5O_info2_t Oinfo; + /* * Call H5Oinfo_by_name function. */ - if(H5Oget_info2((hid_t)*object_id, &Oinfo, (unsigned)*fields) < 0) + if(H5Oget_info3((hid_t)*object_id, &Oinfo, (unsigned)*fields) < 0) HGOTO_DONE(FAIL); ret_value = fill_h5o_info_t_f(Oinfo,object_info); @@ -528,7 +511,7 @@ h5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len, */ int_f h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order, - H5O_iterate_t op, void *op_data, hid_t_f *lapl_id, int_f *fields ) + H5O_iterate2_t op, void *op_data, hid_t_f *lapl_id, int_f *fields ) /******/ { int_f ret_value = -1; /* Return value */ @@ -542,9 +525,9 @@ h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f HGOTO_DONE(FAIL); /* - * Call H5Ovisit + * Call H5Ovisit_by_name */ - func_ret_value = H5Ovisit_by_name2( (hid_t)*loc_id, c_object_name, (H5_index_t)*index_type, (H5_iter_order_t)*order, + func_ret_value = H5Ovisit_by_name3( (hid_t)*loc_id, c_object_name, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, (unsigned)*fields, (hid_t)*lapl_id); ret_value = (int_f)func_ret_value; @@ -934,3 +917,41 @@ h5oget_comment_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *name_size, return ret_value; } + +/****if* H5Of/h5otoken_cmp_c + * NAME + * h5otoken_cmp_c + * PURPOSE + * Calls H5Otoken_cmp + * INPUTS + * loc_id - Identifier of an object in the file / container. + * token1 - The first token to compare. + * token2 - The second token to compare. + * cmp_value - Whether the tokens are equal. + * RETURNS + * 0 on success, -1 on failure + * AUTHOR + * Quincey Koziol + * January 10, 2019 + * SOURCE +*/ +int_f +h5otoken_cmp_c(hid_t_f *loc_id, H5O_token_t *token1, H5O_token_t *token2, + int_f *cmp_value_f) +/******/ +{ + int cmp_value; /* Token comparison result */ + int_f ret_value = 0; /* Return value */ + + /* Call H5Otoken_cmp function */ + cmp_value = 0; + if(H5Otoken_cmp((hid_t)*loc_id, token1, token2, &cmp_value) < 0) + HGOTO_DONE(FAIL); + + /* Set the comparison value to return */ + *cmp_value_f = cmp_value; + +done: + return ret_value; +} + diff --git a/fortran/src/H5Off.F90 b/fortran/src/H5Off.F90 index 8c77230..2b025a7 100644 --- a/fortran/src/H5Off.F90 +++ b/fortran/src/H5Off.F90 @@ -44,7 +44,43 @@ MODULE H5O USE H5GLOBAL IMPLICIT NONE -!****t* H5T (F03)/h5o_info_t +!****t* H5O (F03)/h5o_info_t +! +! Fortran2003 Derived Type: +! + TYPE, BIND(C) :: h5o_info_t + INTEGER(C_LONG) :: fileno ! File number that object is located in + TYPE(H5O_TOKEN_T_F) :: token ! Token for object in file + INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) + INTEGER :: rc ! Reference count of object + + INTEGER, DIMENSION(8) :: atime ! Access time ! -- NOTE -- + INTEGER, DIMENSION(8) :: mtime ! Modification time ! Returns an integer array + INTEGER, DIMENSION(8) :: ctime ! Change time ! as specified in the Fortran + INTEGER, DIMENSION(8) :: btime ! Birth time ! intrinsic DATE_AND_TIME(VALUES) + + INTEGER(hsize_t) :: num_attrs ! # of attributes attached to object + END TYPE h5o_info_t + +! C interoperable structure for h5o_info_t. The Fortran derived type returns the time +! values as an integer array as specified in the Fortran intrinsic DATE_AND_TIME(VALUES). +! Whereas, this derived type does not. + + TYPE, BIND(C) :: c_h5o_info_t + INTEGER(C_LONG) :: fileno ! File number that object is located in + TYPE(H5O_TOKEN_T_F) :: token ! Token for object in file + INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) + INTEGER(C_INT) :: rc ! Reference count of object + + INTEGER(KIND=TIME_T) :: atime ! Access time + INTEGER(KIND=TIME_T) :: mtime ! Modify time + INTEGER(KIND=TIME_T) :: ctime ! Create time + INTEGER(KIND=TIME_T) :: btime ! Birth time + + INTEGER(hsize_t) :: num_attrs ! # of attributes attached to object + END TYPE c_h5o_info_t + +!****t* H5O (F03)/h5o_native_info_t ! ! Fortran2003 Derived Type: ! @@ -59,13 +95,13 @@ MODULE H5O INTEGER(c_int64_t) :: present ! Flags to indicate presence of message type in header INTEGER(c_int64_t) :: shared ! Flags to indicate message type is shared in header END TYPE mesg_t - + TYPE, BIND(C) :: hdr_t INTEGER :: version ! Version number of header format in file INTEGER :: nmesgs ! Number of object header messages INTEGER :: nchunks ! Number of object header chunks INTEGER :: flags ! Object header status flags - TYPE(space_t) :: space + TYPE(space_t) :: space TYPE(mesg_t) :: mesg END TYPE hdr_t @@ -74,7 +110,7 @@ MODULE H5O INTEGER(C_INT) :: nmesgs ! Number of object header messages INTEGER(C_INT) :: nchunks ! Number of object header chunks INTEGER(C_INT) :: flags ! Object header status flags - TYPE(space_t) :: space + TYPE(space_t) :: space TYPE(mesg_t) :: mesg END TYPE c_hdr_t @@ -88,46 +124,17 @@ MODULE H5O TYPE(H5_ih_info_t) :: obj ! v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets TYPE(H5_ih_info_t) :: attr ! v2 B-tree & heap for attributes ENDTYPE meta_size_t - - TYPE, BIND(C) :: h5o_info_t - INTEGER(C_LONG) :: fileno ! File number that object is located in - INTEGER(haddr_t) :: addr ! Object address in file - INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) - INTEGER :: rc ! Reference count of object - - INTEGER, DIMENSION(8) :: atime ! Access time ! -- NOTE -- - INTEGER, DIMENSION(8) :: mtime ! Modification time ! Returns an integer array - INTEGER, DIMENSION(8) :: ctime ! Change time ! as specified in the Fortran - INTEGER, DIMENSION(8) :: btime ! Birth time ! intrinsic DATE_AND_TIME(VALUES) - - INTEGER(hsize_t) :: num_attrs ! # of attributes attached to object + TYPE, BIND(C) :: h5o_native_info_t TYPE(hdr_t) :: hdr - TYPE(meta_size_t) :: meta_size - END TYPE h5o_info_t - -! C interoperable structure for h5o_info_t. The Fortran derived type returns the time -! values as an integer array as specified in the Fortran intrinsic DATE_AND_TIME(VALUES). -! Whereas, this derived type does not. - - TYPE, BIND(C) :: c_h5o_info_t - INTEGER(C_LONG) :: fileno ! File number that object is located in - INTEGER(haddr_t) :: addr ! Object address in file - INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) - INTEGER(C_INT) :: rc ! Reference count of object - - INTEGER(KIND=TIME_T) :: atime ! Access time - INTEGER(KIND=TIME_T) :: mtime ! modify time - INTEGER(KIND=TIME_T) :: ctime ! create time - INTEGER(KIND=TIME_T) :: btime ! Access time - - INTEGER(hsize_t) :: num_attrs ! # of attributes attached to object + END TYPE h5o_native_info_t +! C interoperable structure for h5o_native_info_t. + TYPE, BIND(C) :: c_h5o_native_info_t TYPE(c_hdr_t) :: hdr - TYPE(meta_size_t) :: meta_size - END TYPE c_h5o_info_t + END TYPE c_h5o_native_info_t !***** @@ -292,46 +299,46 @@ CONTAINS END SUBROUTINE h5oclose_f ! -!****s* H5O/h5open_by_addr_f -! NAME -! h5oopen_by_addr_f +!****s* H5O/h5oopen_by_token_f +! NAME +! h5oopen_by_token_f ! ! PURPOSE -! Opens an object using its address within an HDF5 file. +! Opens an object using its token within an HDF5 file. ! -! Inputs: +! Inputs: ! loc_id - File or group identifier. -! addr - Object’s address in the file. +! token - Object’s token in the file. ! ! Outputs: ! obj_id - Object identifier for the opened object. ! hdferr - Returns 0 if successful and -1 if fails. ! -! AUTHOR +! AUTHOR ! M. Scot Breitenfeld ! September 14, 2009 -! +! ! Fortran90 Interface: - SUBROUTINE h5oopen_by_addr_f(loc_id, addr, obj_id, hdferr) + SUBROUTINE h5oopen_by_token_f(loc_id, token, obj_id, hdferr) IMPLICIT NONE - INTEGER(HID_T) , INTENT(IN) :: loc_id - INTEGER(HADDR_T), INTENT(IN) :: addr - INTEGER(HID_T) , INTENT(OUT) :: obj_id - INTEGER , INTENT(OUT) :: hdferr + INTEGER(HID_T) , INTENT(IN) :: loc_id + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token + INTEGER(HID_T) , INTENT(OUT) :: obj_id + INTEGER , INTENT(OUT) :: hdferr !***** INTERFACE - INTEGER FUNCTION h5oopen_by_addr_c(loc_id, addr, obj_id) BIND(C,NAME='h5oopen_by_addr_c') - IMPORT :: HID_T, HADDR_T + INTEGER FUNCTION h5oopen_by_token_c(loc_id, token, obj_id) BIND(C,NAME='h5oopen_by_token_c') + IMPORT :: HID_T, H5O_TOKEN_T_F IMPLICIT NONE INTEGER(HID_T), INTENT(IN) :: loc_id - INTEGER(HADDR_T), INTENT(IN) :: addr + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token INTEGER(HID_T), INTENT(OUT) :: obj_id - END FUNCTION h5oopen_by_addr_c + END FUNCTION h5oopen_by_token_c END INTERFACE - hdferr = h5oopen_by_addr_c(loc_id, addr, obj_id) + hdferr = h5oopen_by_token_c(loc_id, token, obj_id) - END SUBROUTINE h5oopen_by_addr_f + END SUBROUTINE h5oopen_by_token_f ! !****s* H5O/h5ocopy_f ! NAME @@ -966,7 +973,7 @@ CONTAINS CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: name INTEGER(SIZE_T) , INTENT(IN) :: namelen INTEGER(HID_T) , INTENT(IN) :: lapl_id_default - TYPE(C_PTR),VALUE :: object_info + TYPE(C_PTR), VALUE :: object_info INTEGER , INTENT(IN) :: fields END FUNCTION h5oget_info_by_name_c END INTERFACE @@ -1212,5 +1219,50 @@ CONTAINS END SUBROUTINE h5ovisit_by_name_f +!****s* H5O/h5otoken_cmp_f +! NAME +! h5otoken_cmp_f +! +! PURPOSE +! Compare two tokens, which must be from the same file / containers. +! +! Inputs: +! loc_id - Identifier of an object in the file / container. +! token1 - The first token to compare. +! token2 - The second token to compare. +! +! Outputs: +! cmp_value - Returns 0 if tokens are equal, non-zero for unequal tokens. +! hdferr - Returns 0 if successful and -1 if fails. +! +! AUTHOR +! Quincey Koziol +! January 10, 2019 +! +! Fortran90 Interface: + SUBROUTINE h5otoken_cmp_f(loc_id, token1, token2, cmp_value, hdferr) + IMPLICIT NONE + INTEGER(HID_T) , INTENT(IN) :: loc_id + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token1 ! First token + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token2 ! First token + INTEGER , INTENT(OUT) :: cmp_value + INTEGER , INTENT(OUT) :: hdferr +!***** + INTERFACE + INTEGER FUNCTION h5otoken_cmp_c(loc_id, token1, token2, cmp_value) BIND(C,NAME='h5otoken_cmp_c') + IMPORT :: HID_T, C_PTR, H5O_TOKEN_T_F + IMPLICIT NONE + INTEGER(HID_T), INTENT(IN) :: loc_id + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token1 ! First token + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token2 ! First token + INTEGER, INTENT(OUT) :: cmp_value + + END FUNCTION h5otoken_cmp_c + END INTERFACE + + hdferr = h5otoken_cmp_c(loc_id, token1, token2, cmp_value) + + END SUBROUTINE h5otoken_cmp_f + END MODULE H5O diff --git a/fortran/src/H5VLff.F90 b/fortran/src/H5VLff.F90 index e21f38f..eea9dfe 100644 --- a/fortran/src/H5VLff.F90 +++ b/fortran/src/H5VLff.F90 @@ -167,10 +167,49 @@ CONTAINS END SUBROUTINE H5VLis_connector_registered_f ! -!****s* H5VL/H5VLis_connector_registered_f +!****s* H5VL/H5VLget_connector_id_f ! ! NAME -! H5VLis_connector_registered_f +! H5VLget_connector_id_f +! +! PURPOSE +! Retrieves the ID for a registered VOL connector. +! +! INPUTS +! obj_id - Object id +! OUTPUTS +! vol_id - Connector id +! hdferr - Returns 0 if successful and -1 if fails +! SOURCE + + SUBROUTINE H5VLget_connector_id_f(obj_id, vol_id, hdferr) + IMPLICIT NONE + INTEGER(HID_T), INTENT(IN) :: obj_id + INTEGER(HID_T), INTENT(OUT) :: vol_id + INTEGER, INTENT(OUT) :: hdferr +!***** + + INTERFACE + INTEGER(HID_T) FUNCTION H5VLget_connector_id(obj_id) BIND(C,NAME='H5VLget_connector_id') + IMPORT :: HID_T + INTEGER(HID_T), INTENT(IN) :: obj_id + END FUNCTION H5VLget_connector_id + END INTERFACE + + vol_id = H5VLget_connector_id(obj_id) + + IF(vol_id.LT.0)THEN + hdferr = -1 + vol_id = H5I_INVALID_HID_F + ENDIF + + END SUBROUTINE H5VLget_connector_id_f + +! +!****s* H5VL/H5VLget_connector_id_by_name_f +! +! NAME +! H5VLget_connector_id_by_name_f ! ! PURPOSE ! Retrieves the ID for a registered VOL connector. @@ -182,7 +221,7 @@ CONTAINS ! hdferr - Returns 0 if successful and -1 if fails ! SOURCE - SUBROUTINE H5VLget_connector_id_f(name, vol_id, hdferr) + SUBROUTINE H5VLget_connector_id_by_name_f(name, vol_id, hdferr) IMPLICIT NONE CHARACTER(LEN=*), INTENT(IN) :: name INTEGER(HID_T), INTENT(OUT) :: vol_id @@ -191,22 +230,23 @@ CONTAINS CHARACTER(LEN=LEN_TRIM(name)+1,KIND=C_CHAR) :: c_name INTERFACE - INTEGER(HID_T) FUNCTION H5VLget_connector_id(name) BIND(C,NAME='H5VLget_connector_id') + INTEGER(HID_T) FUNCTION H5VLget_connector_id_by_name(name) BIND(C,NAME='H5VLget_connector_id_by_name') IMPORT :: C_CHAR IMPORT :: HID_T CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: name - END FUNCTION H5VLget_connector_id + END FUNCTION H5VLget_connector_id_by_name END INTERFACE c_name = TRIM(name)//C_NULL_CHAR - vol_id = H5VLget_connector_id(c_name) - + vol_id = H5VLget_connector_id_by_name(c_name) + + hdferr = 0 IF(vol_id.LT.0)THEN hdferr = -1 vol_id = H5I_INVALID_HID_F ENDIF - END SUBROUTINE H5VLget_connector_id_f + END SUBROUTINE H5VLget_connector_id_by_name_f SUBROUTINE H5VLget_connector_name_f(obj_id, name, hdferr, name_len) IMPLICIT NONE diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c index 2d1c6e7..132da7b 100644 --- a/fortran/src/H5_f.c +++ b/fortran/src/H5_f.c @@ -56,7 +56,6 @@ h5init_types_c( hid_t_f * types, hid_t_f * floatingtypes, hid_t_f * integertypes { int ret_value = -1; hid_t c_type_id; - size_t tmp_val; int i; /* Fortran INTEGER may not be the same as C; do all checking to find @@ -133,8 +132,7 @@ h5init_types_c( hid_t_f * types, hid_t_f * floatingtypes, hid_t_f * integertypes #endif if ((c_type_id = H5Tcopy(H5T_FORTRAN_S1)) < 0) return ret_value; - tmp_val = 1; - if(H5Tset_size(c_type_id, tmp_val) < 0) return ret_value; + if(H5Tset_size(c_type_id, 1) < 0) return ret_value; if(H5Tset_strpad(c_type_id, H5T_STR_SPACEPAD) < 0) return ret_value; types[8] = (hid_t_f)c_type_id; @@ -313,6 +311,7 @@ h5close_types_c( hid_t_f * types, int_f *lentypes, ret_value = 0; return ret_value; } + /****if* H5_f/h5init_flags_c * NAME * h5init_flags_c @@ -370,7 +369,6 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags, haddr_t_f *h5_haddr_generic_flags) /******/ { - int ret_value = -1; /* * H5D flags */ @@ -538,196 +536,201 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags, * but we need to assign each kind of message to a different bit so that * one index can hold multiple types.) */ - h5o_flags[7] = (int_f)H5O_SHMESG_NONE_FLAG; /* No shared messages */ - h5o_flags[8] = (int_f)H5O_SHMESG_SDSPACE_FLAG; /* Simple Dataspace Message. */ - h5o_flags[9] = (int_f)H5O_SHMESG_DTYPE_FLAG; /* Datatype Message. */ - h5o_flags[10] = (int_f)H5O_SHMESG_FILL_FLAG; /* Fill Value Message. */ - h5o_flags[11] = (int_f)H5O_SHMESG_PLINE_FLAG; /* Filter pipeline message. */ - h5o_flags[12] = (int_f)H5O_SHMESG_ATTR_FLAG; /* Attribute Message. */ - h5o_flags[13] = (int_f)H5O_SHMESG_ALL_FLAG; + h5o_flags[7] = (int_f)H5O_SHMESG_NONE_FLAG; /* No shared messages */ + h5o_flags[8] = (int_f)H5O_SHMESG_SDSPACE_FLAG; /* Simple Dataspace Message. */ + h5o_flags[9] = (int_f)H5O_SHMESG_DTYPE_FLAG; /* Datatype Message. */ + h5o_flags[10] = (int_f)H5O_SHMESG_FILL_FLAG; /* Fill Value Message. */ + h5o_flags[11] = (int_f)H5O_SHMESG_PLINE_FLAG; /* Filter pipeline message. */ + h5o_flags[12] = (int_f)H5O_SHMESG_ATTR_FLAG; /* Attribute Message. */ + h5o_flags[13] = (int_f)H5O_SHMESG_ALL_FLAG; /* Object header status flag definitions */ - h5o_flags[14] = (int_f)H5O_HDR_CHUNK0_SIZE; /* 2-bit field indicating # of bytes to store the size of chunk 0's data */ - h5o_flags[15] = (int_f)H5O_HDR_ATTR_CRT_ORDER_TRACKED; /* Attribute creation order is tracked */ - h5o_flags[16] = (int_f)H5O_HDR_ATTR_CRT_ORDER_INDEXED; /* Attribute creation order has index */ - h5o_flags[17] = (int_f)H5O_HDR_ATTR_STORE_PHASE_CHANGE; /* Non-default attribute storage phase change values stored */ - h5o_flags[18] = (int_f)H5O_HDR_STORE_TIMES; /* Store access, modification, change & birth times for object */ - h5o_flags[19] = (int_f)H5O_HDR_ALL_FLAGS; + h5o_flags[14] = (int_f)H5O_HDR_CHUNK0_SIZE; /* 2-bit field indicating # of bytes to store the size of chunk 0's data */ + h5o_flags[15] = (int_f)H5O_HDR_ATTR_CRT_ORDER_TRACKED; /* Attribute creation order is tracked */ + h5o_flags[16] = (int_f)H5O_HDR_ATTR_CRT_ORDER_INDEXED; /* Attribute creation order has index */ + h5o_flags[17] = (int_f)H5O_HDR_ATTR_STORE_PHASE_CHANGE; /* Non-default attribute storage phase change values stored */ + h5o_flags[18] = (int_f)H5O_HDR_STORE_TIMES; /* Store access, modification, change & birth times for object */ + h5o_flags[19] = (int_f)H5O_HDR_ALL_FLAGS; /* Maximum shared message values. Number of indexes is 8 to allow room to add * new types of messages. */ - h5o_flags[20] = (int_f)H5O_SHMESG_MAX_NINDEXES; - h5o_flags[21] = (int_f)H5O_SHMESG_MAX_LIST_SIZE; + h5o_flags[20] = (int_f)H5O_SHMESG_MAX_NINDEXES; + h5o_flags[21] = (int_f)H5O_SHMESG_MAX_LIST_SIZE; /* Types of objects in file */ - h5o_flags[22] = (int_f)H5O_TYPE_UNKNOWN; /* Unknown object type */ - h5o_flags[23] = (int_f)H5O_TYPE_GROUP; /* Object is a group */ - h5o_flags[24] = (int_f)H5O_TYPE_DATASET; /* Object is a dataset */ - h5o_flags[25] = (int_f)H5O_TYPE_NAMED_DATATYPE; /* Object is a named data type */ - h5o_flags[26] = (int_f)H5O_TYPE_NTYPES; /* Number of different object types */ + h5o_flags[22] = (int_f)H5O_TYPE_UNKNOWN; /* Unknown object type */ + h5o_flags[23] = (int_f)H5O_TYPE_GROUP; /* Object is a group */ + h5o_flags[24] = (int_f)H5O_TYPE_DATASET; /* Object is a dataset */ + h5o_flags[25] = (int_f)H5O_TYPE_NAMED_DATATYPE; /* Object is a named data type */ + h5o_flags[26] = (int_f)H5O_TYPE_NTYPES; /* Number of different object types */ /* Flags for H5Oget_info. * These flags determine which fields will be filled in in the H5O_info_t - * struct. + * struct. */ - h5o_flags[27] = (int_f)H5O_INFO_ALL; /* (H5O_INFO_BASIC|H5O_INFO_TIME|H5O_INFO_NUM_ATTRS|H5O_INFO_HDR|H5O_INFO_META_SIZE) */ - h5o_flags[28] = (int_f)H5O_INFO_BASIC; /* Fill in the fileno, addr, type, and rc fields */ - h5o_flags[29] = (int_f)H5O_INFO_TIME; /* Fill in the atime, mtime, ctime, and btime fields */ - h5o_flags[30] = (int_f)H5O_INFO_NUM_ATTRS; /* Fill in the num_attrs field */ - h5o_flags[31] = (int_f)H5O_INFO_HDR; /* Fill in the hdr field */ - h5o_flags[32] = (int_f)H5O_INFO_META_SIZE; /* Fill in the meta_size field */ + h5o_flags[27] = (int_f)H5O_INFO_ALL; /* (H5O_INFO_BASIC|H5O_INFO_TIME|H5O_INFO_NUM_ATTRS) */ + h5o_flags[28] = (int_f)H5O_INFO_BASIC; /* Fill in the fileno, addr, type, and rc fields */ + h5o_flags[29] = (int_f)H5O_INFO_TIME; /* Fill in the atime, mtime, ctime, and btime fields */ + h5o_flags[30] = (int_f)H5O_INFO_NUM_ATTRS; /* Fill in the num_attrs field */ + +/* Flags for H5Oget_native_info. + * These flags determine which fields will be filled in in the H5O_native_info_t + * struct. + */ + h5o_flags[31] = (int_f)H5O_NATIVE_INFO_ALL; /* (H5O_NATIVE_INFO_HDR|H5O_NATIVE_INFO_META_SIZE) */ + h5o_flags[32] = (int_f)H5O_NATIVE_INFO_HDR; /* Fill in the hdr field */ + h5o_flags[33] = (int_f)H5O_NATIVE_INFO_META_SIZE; /* Fill in the meta_size field */ /* * H5P flags */ - h5p_flags[0] = (hid_t_f)H5P_FILE_CREATE; - h5p_flags[1] = (hid_t_f)H5P_FILE_ACCESS; - h5p_flags[2] = (hid_t_f)H5P_DATASET_CREATE; - h5p_flags[3] = (hid_t_f)H5P_DATASET_XFER; - h5p_flags[4] = (hid_t_f)H5P_FILE_MOUNT; - h5p_flags[5] = (hid_t_f)H5P_DEFAULT; - h5p_flags[6] = (hid_t_f)H5P_ROOT; - h5p_flags[7] = (hid_t_f)H5P_OBJECT_CREATE; - h5p_flags[8] = (hid_t_f)H5P_DATASET_ACCESS; - h5p_flags[9] = (hid_t_f)H5P_GROUP_CREATE; - h5p_flags[10] = (hid_t_f)H5P_GROUP_ACCESS; - h5p_flags[11] = (hid_t_f)H5P_DATATYPE_CREATE; - h5p_flags[12] = (hid_t_f)H5P_DATATYPE_ACCESS; - h5p_flags[13] = (hid_t_f)H5P_STRING_CREATE; - h5p_flags[14] = (hid_t_f)H5P_ATTRIBUTE_CREATE; - h5p_flags[15] = (hid_t_f)H5P_OBJECT_COPY; - h5p_flags[16] = (hid_t_f)H5P_LINK_CREATE; - h5p_flags[17] = (hid_t_f)H5P_LINK_ACCESS; + h5p_flags[0] = (hid_t_f)H5P_FILE_CREATE; + h5p_flags[1] = (hid_t_f)H5P_FILE_ACCESS; + h5p_flags[2] = (hid_t_f)H5P_DATASET_CREATE; + h5p_flags[3] = (hid_t_f)H5P_DATASET_XFER; + h5p_flags[4] = (hid_t_f)H5P_FILE_MOUNT; + h5p_flags[5] = (hid_t_f)H5P_DEFAULT; + h5p_flags[6] = (hid_t_f)H5P_ROOT; + h5p_flags[7] = (hid_t_f)H5P_OBJECT_CREATE; + h5p_flags[8] = (hid_t_f)H5P_DATASET_ACCESS; + h5p_flags[9] = (hid_t_f)H5P_GROUP_CREATE; + h5p_flags[10] = (hid_t_f)H5P_GROUP_ACCESS; + h5p_flags[11] = (hid_t_f)H5P_DATATYPE_CREATE; + h5p_flags[12] = (hid_t_f)H5P_DATATYPE_ACCESS; + h5p_flags[13] = (hid_t_f)H5P_STRING_CREATE; + h5p_flags[14] = (hid_t_f)H5P_ATTRIBUTE_CREATE; + h5p_flags[15] = (hid_t_f)H5P_OBJECT_COPY; + h5p_flags[16] = (hid_t_f)H5P_LINK_CREATE; + h5p_flags[17] = (hid_t_f)H5P_LINK_ACCESS; /* * H5P integer flags */ - h5p_flags_int[0] = (int_f)H5P_CRT_ORDER_INDEXED; - h5p_flags_int[1] = (int_f)H5P_CRT_ORDER_TRACKED; + h5p_flags_int[0] = (int_f)H5P_CRT_ORDER_INDEXED; + h5p_flags_int[1] = (int_f)H5P_CRT_ORDER_TRACKED; /* * H5R flags */ - - h5r_flags[0] = (int_f)H5R_OBJECT; - h5r_flags[1] = (int_f)H5R_DATASET_REGION; + h5r_flags[0] = (int_f)H5R_OBJECT; + h5r_flags[1] = (int_f)H5R_DATASET_REGION; /* * H5S flags */ - - h5s_hid_flags[0] = (hid_t_f)H5S_ALL; - - h5s_hsize_flags[0] = (hsize_t_f)H5S_UNLIMITED; - - h5s_flags[0] = (int_f)H5S_SCALAR; - h5s_flags[1] = (int_f)H5S_SIMPLE; - h5s_flags[2] = (int_f)H5S_NULL; - h5s_flags[3] = (int_f)H5S_SELECT_SET; - h5s_flags[4] = (int_f)H5S_SELECT_OR; - - h5s_flags[5] = (int_f)H5S_SELECT_NOOP; - h5s_flags[6] = (int_f)H5S_SELECT_AND; - h5s_flags[7] = (int_f)H5S_SELECT_XOR; - h5s_flags[8] = (int_f)H5S_SELECT_NOTB; - h5s_flags[9] = (int_f)H5S_SELECT_NOTA; - - h5s_flags[10] = (int_f)H5S_SELECT_APPEND; - h5s_flags[11] = (int_f)H5S_SELECT_PREPEND; - h5s_flags[12] = (int_f)H5S_SELECT_INVALID; - h5s_flags[13] = (int_f)H5S_SEL_ERROR; - h5s_flags[14] = (int_f)H5S_SEL_NONE; - - h5s_flags[15] = (int_f)H5S_SEL_POINTS; - h5s_flags[16] = (int_f)H5S_SEL_HYPERSLABS; - h5s_flags[17] = (int_f)H5S_SEL_ALL; + h5s_hid_flags[0] = (hid_t_f)H5S_ALL; + + h5s_hsize_flags[0] = (hsize_t_f)H5S_UNLIMITED; + + h5s_flags[0] = (int_f)H5S_SCALAR; + h5s_flags[1] = (int_f)H5S_SIMPLE; + h5s_flags[2] = (int_f)H5S_NULL; + h5s_flags[3] = (int_f)H5S_SELECT_SET; + h5s_flags[4] = (int_f)H5S_SELECT_OR; + + h5s_flags[5] = (int_f)H5S_SELECT_NOOP; + h5s_flags[6] = (int_f)H5S_SELECT_AND; + h5s_flags[7] = (int_f)H5S_SELECT_XOR; + h5s_flags[8] = (int_f)H5S_SELECT_NOTB; + h5s_flags[9] = (int_f)H5S_SELECT_NOTA; + + h5s_flags[10] = (int_f)H5S_SELECT_APPEND; + h5s_flags[11] = (int_f)H5S_SELECT_PREPEND; + h5s_flags[12] = (int_f)H5S_SELECT_INVALID; + h5s_flags[13] = (int_f)H5S_SEL_ERROR; + h5s_flags[14] = (int_f)H5S_SEL_NONE; + + h5s_flags[15] = (int_f)H5S_SEL_POINTS; + h5s_flags[16] = (int_f)H5S_SEL_HYPERSLABS; + h5s_flags[17] = (int_f)H5S_SEL_ALL; + /* * H5T flags */ - h5t_flags[0] = (int_f)H5T_NO_CLASS; - h5t_flags[1] = (int_f)H5T_INTEGER; - h5t_flags[2] = (int_f)H5T_FLOAT; - h5t_flags[3] = (int_f)H5T_TIME; - h5t_flags[4] = (int_f)H5T_STRING; - h5t_flags[5] = (int_f)H5T_BITFIELD; - h5t_flags[6] = (int_f)H5T_OPAQUE; - h5t_flags[7] = (int_f)H5T_COMPOUND; - h5t_flags[8] = (int_f)H5T_REFERENCE; - h5t_flags[9] = (int_f)H5T_ENUM; - h5t_flags[10] = (int_f)H5T_ORDER_LE; - h5t_flags[11] = (int_f)H5T_ORDER_BE; - h5t_flags[12] = (int_f)H5T_ORDER_MIXED; - h5t_flags[13] = (int_f)H5T_ORDER_VAX; - h5t_flags[14] = (int_f)H5T_ORDER_NONE; - h5t_flags[15] = (int_f)H5T_PAD_ZERO; - h5t_flags[16] = (int_f)H5T_PAD_ONE; - h5t_flags[17] = (int_f)H5T_PAD_BACKGROUND; - h5t_flags[18] = (int_f)H5T_PAD_ERROR; - h5t_flags[19] = (int_f)H5T_SGN_NONE; - h5t_flags[20] = (int_f)H5T_SGN_2; - h5t_flags[21] = (int_f)H5T_SGN_ERROR; - h5t_flags[22] = (int_f)H5T_NORM_IMPLIED; - h5t_flags[23] = (int_f)H5T_NORM_MSBSET; - h5t_flags[24] = (int_f)H5T_NORM_NONE; - h5t_flags[25] = (int_f)H5T_CSET_ASCII; - h5t_flags[26] = (int_f)H5T_CSET_UTF8; - h5t_flags[27] = (int_f)H5T_STR_NULLTERM; - h5t_flags[28] = (int_f)H5T_STR_NULLPAD; - h5t_flags[29] = (int_f)H5T_STR_SPACEPAD; - h5t_flags[30] = (int_f)H5T_STR_ERROR; - h5t_flags[31] = (int_f)H5T_VLEN; - h5t_flags[32] = (int_f)H5T_ARRAY; - h5t_flags[33] = (int_f)H5T_DIR_ASCEND; - h5t_flags[34] = (int_f)H5T_DIR_DESCEND; + h5t_flags[0] = (int_f)H5T_NO_CLASS; + h5t_flags[1] = (int_f)H5T_INTEGER; + h5t_flags[2] = (int_f)H5T_FLOAT; + h5t_flags[3] = (int_f)H5T_TIME; + h5t_flags[4] = (int_f)H5T_STRING; + h5t_flags[5] = (int_f)H5T_BITFIELD; + h5t_flags[6] = (int_f)H5T_OPAQUE; + h5t_flags[7] = (int_f)H5T_COMPOUND; + h5t_flags[8] = (int_f)H5T_REFERENCE; + h5t_flags[9] = (int_f)H5T_ENUM; + h5t_flags[10] = (int_f)H5T_ORDER_LE; + h5t_flags[11] = (int_f)H5T_ORDER_BE; + h5t_flags[12] = (int_f)H5T_ORDER_MIXED; + h5t_flags[13] = (int_f)H5T_ORDER_VAX; + h5t_flags[14] = (int_f)H5T_ORDER_NONE; + h5t_flags[15] = (int_f)H5T_PAD_ZERO; + h5t_flags[16] = (int_f)H5T_PAD_ONE; + h5t_flags[17] = (int_f)H5T_PAD_BACKGROUND; + h5t_flags[18] = (int_f)H5T_PAD_ERROR; + h5t_flags[19] = (int_f)H5T_SGN_NONE; + h5t_flags[20] = (int_f)H5T_SGN_2; + h5t_flags[21] = (int_f)H5T_SGN_ERROR; + h5t_flags[22] = (int_f)H5T_NORM_IMPLIED; + h5t_flags[23] = (int_f)H5T_NORM_MSBSET; + h5t_flags[24] = (int_f)H5T_NORM_NONE; + h5t_flags[25] = (int_f)H5T_CSET_ASCII; + h5t_flags[26] = (int_f)H5T_CSET_UTF8; + h5t_flags[27] = (int_f)H5T_STR_NULLTERM; + h5t_flags[28] = (int_f)H5T_STR_NULLPAD; + h5t_flags[29] = (int_f)H5T_STR_SPACEPAD; + h5t_flags[30] = (int_f)H5T_STR_ERROR; + h5t_flags[31] = (int_f)H5T_VLEN; + h5t_flags[32] = (int_f)H5T_ARRAY; + h5t_flags[33] = (int_f)H5T_DIR_ASCEND; + h5t_flags[34] = (int_f)H5T_DIR_DESCEND; + /* * H5Z flags */ - h5z_flags[0] = (int_f)H5Z_FILTER_ERROR; - h5z_flags[1] = (int_f)H5Z_FILTER_NONE; - h5z_flags[2] = (int_f)H5Z_FILTER_DEFLATE; - h5z_flags[3] = (int_f)H5Z_FILTER_SHUFFLE; - h5z_flags[4] = (int_f)H5Z_FILTER_FLETCHER32; - h5z_flags[5] = (int_f)H5Z_ERROR_EDC; - h5z_flags[6] = (int_f)H5Z_DISABLE_EDC; - h5z_flags[7] = (int_f)H5Z_ENABLE_EDC; - h5z_flags[8] = (int_f)H5Z_NO_EDC; - h5z_flags[9] = (int_f)H5Z_FILTER_SZIP; - h5z_flags[10] = (int_f)H5Z_FLAG_OPTIONAL; - h5z_flags[11] = (int_f)H5Z_FILTER_CONFIG_ENCODE_ENABLED; - h5z_flags[12] = (int_f)H5Z_FILTER_CONFIG_DECODE_ENABLED; - h5z_flags[13] = (int_f)H5Z_FILTER_ALL; - h5z_flags[14] = (int_f)H5Z_FILTER_NBIT; - h5z_flags[15] = (int_f)H5Z_FILTER_SCALEOFFSET; - h5z_flags[16] = (int_f)H5Z_SO_FLOAT_DSCALE; - h5z_flags[17] = (int_f)H5Z_SO_FLOAT_ESCALE; - h5z_flags[18] = (int_f)H5Z_SO_INT; - h5z_flags[19] = (int_f)H5Z_SO_INT_MINBITS_DEFAULT; + h5z_flags[0] = (int_f)H5Z_FILTER_ERROR; + h5z_flags[1] = (int_f)H5Z_FILTER_NONE; + h5z_flags[2] = (int_f)H5Z_FILTER_DEFLATE; + h5z_flags[3] = (int_f)H5Z_FILTER_SHUFFLE; + h5z_flags[4] = (int_f)H5Z_FILTER_FLETCHER32; + h5z_flags[5] = (int_f)H5Z_ERROR_EDC; + h5z_flags[6] = (int_f)H5Z_DISABLE_EDC; + h5z_flags[7] = (int_f)H5Z_ENABLE_EDC; + h5z_flags[8] = (int_f)H5Z_NO_EDC; + h5z_flags[9] = (int_f)H5Z_FILTER_SZIP; + h5z_flags[10] = (int_f)H5Z_FLAG_OPTIONAL; + h5z_flags[11] = (int_f)H5Z_FILTER_CONFIG_ENCODE_ENABLED; + h5z_flags[12] = (int_f)H5Z_FILTER_CONFIG_DECODE_ENABLED; + h5z_flags[13] = (int_f)H5Z_FILTER_ALL; + h5z_flags[14] = (int_f)H5Z_FILTER_NBIT; + h5z_flags[15] = (int_f)H5Z_FILTER_SCALEOFFSET; + h5z_flags[16] = (int_f)H5Z_SO_FLOAT_DSCALE; + h5z_flags[17] = (int_f)H5Z_SO_FLOAT_ESCALE; + h5z_flags[18] = (int_f)H5Z_SO_INT; + h5z_flags[19] = (int_f)H5Z_SO_INT_MINBITS_DEFAULT; /* * H5 Generic flags introduced in version 1.8 */ - /* H5_index_t enum struct */ + /* H5_index_t enum struct */ - h5_generic_flags[0] = (int_f)H5_INDEX_UNKNOWN; /* Unknown index type */ - h5_generic_flags[1] = (int_f)H5_INDEX_NAME; /* Index on names */ - h5_generic_flags[2] = (int_f)H5_INDEX_CRT_ORDER; /* Index on creation order */ - h5_generic_flags[3] = (int_f)H5_INDEX_N; /* Index on creation order */ + h5_generic_flags[0] = (int_f)H5_INDEX_UNKNOWN; /* Unknown index type */ + h5_generic_flags[1] = (int_f)H5_INDEX_NAME; /* Index on names */ + h5_generic_flags[2] = (int_f)H5_INDEX_CRT_ORDER; /* Index on creation order */ + h5_generic_flags[3] = (int_f)H5_INDEX_N; /* Index on creation order */ - /* H5_iter_order_t enum struct */ + /* H5_iter_order_t enum struct */ - h5_generic_flags[4] = (int_f)H5_ITER_UNKNOWN; /* Unknown order */ - h5_generic_flags[5] = (int_f)H5_ITER_INC; /* Increasing order */ - h5_generic_flags[6] = (int_f)H5_ITER_DEC; /* Decreasing order */ - h5_generic_flags[7] = (int_f)H5_ITER_NATIVE; /* No particular order, whatever is fastest */ - h5_generic_flags[8] = (int_f)H5_ITER_N; /* Number of iteration orders */ + h5_generic_flags[4] = (int_f)H5_ITER_UNKNOWN; /* Unknown order */ + h5_generic_flags[5] = (int_f)H5_ITER_INC; /* Increasing order */ + h5_generic_flags[6] = (int_f)H5_ITER_DEC; /* Decreasing order */ + h5_generic_flags[7] = (int_f)H5_ITER_NATIVE; /* No particular order, whatever is fastest */ + h5_generic_flags[8] = (int_f)H5_ITER_N; /* Number of iteration orders */ - h5_haddr_generic_flags[0] = (haddr_t_f)HADDR_UNDEF; /* undefined address */ + h5_haddr_generic_flags[0] = (haddr_t_f)HADDR_UNDEF; /* undefined address */ - ret_value = 0; - return ret_value; + return 0; } int_f diff --git a/fortran/src/H5f90.h b/fortran/src/H5f90.h index eabe3d0..655cb9b 100644 --- a/fortran/src/H5f90.h +++ b/fortran/src/H5f90.h @@ -25,5 +25,8 @@ /* Constants used in H5Gf.c files */ #define OBJECT_NAMELEN_DEFAULT_F -1 + #define H5_MAX(a,b) (((a)>(b)) ? (a) : (b)) + #endif /* _H5f90_H */ + diff --git a/fortran/src/H5f90global.F90 b/fortran/src/H5f90global.F90 index 02e3bc3..dabc0bb 100644 --- a/fortran/src/H5f90global.F90 +++ b/fortran/src/H5f90global.F90 @@ -54,6 +54,7 @@ MODULE H5GLOBAL ! If you change the value of these parameters, do not forget to change corresponding ! values in the H5f90.h file. INTEGER, PARAMETER :: REF_REG_BUF_LEN = 3 + INTEGER, PARAMETER :: H5O_TOKEN_BUF_LEN = 16 ! Matches C defined value in H5public.h ! Parameters used in the function 'h5kind_to_type' located in H5_ff.F90. ! The flag is used to tell the function whether the kind input variable @@ -70,13 +71,17 @@ MODULE H5GLOBAL INTEGER, DIMENSION(1:REF_REG_BUF_LEN) :: ref END TYPE hdset_reg_ref_t_f + TYPE, BIND(C) :: h5o_token_t_f + INTEGER(C_INT8_T), DIMENSION(1:H5O_TOKEN_BUF_LEN) :: token + END TYPE h5o_token_t_f + ! Do not forget to change these values when new predefined ! datatypes are added INTEGER, PARAMETER :: PREDEF_TYPES_LEN = 19 INTEGER, PARAMETER :: FLOATING_TYPES_LEN = 4 INTEGER, PARAMETER :: INTEGER_TYPES_LEN = 27 - ! These arrays need to be global because they are used in + ! These arrays need to be global because they are used in ! both h5open_f and in h5close_f; initialize to fix linking issues ! on OSX and Intel compilers. INTEGER(HID_T), DIMENSION(1:PREDEF_TYPES_LEN) :: predef_types = -1 diff --git a/fortran/src/H5f90i.h b/fortran/src/H5f90i.h index 7d066cd..057edc5 100644 --- a/fortran/src/H5f90i.h +++ b/fortran/src/H5f90i.h @@ -21,8 +21,7 @@ */ #include "H5f90i_gen.h" -/* Define _fcd. These are the same on every system - * but UNICOS. +/* Define _fcd. These are the same on every system but UNICOS. */ #define _fcdtocp(desc) (desc) diff --git a/fortran/src/H5f90proto.h b/fortran/src/H5f90proto.h index 5faf4b4..e6f5dd4 100644 --- a/fortran/src/H5f90proto.h +++ b/fortran/src/H5f90proto.h @@ -23,7 +23,7 @@ H5_FCDLL void HD5packFstring(char *src, char *dest, size_t len); /* - * Storage info struct used by H5O_info_t and H5F_info_t + * Storage info struct used by H5O_info_t and H5F_info_t * interoperable with Fortran. */ typedef struct H5_ih_info_t_f { @@ -31,7 +31,7 @@ typedef struct H5_ih_info_t_f { hsize_t heap_size; } H5_ih_info_t_f; -/* Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) +/* Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) * interoperable with Fortran. */ typedef struct H5O_hdr_info_t_f { @@ -51,12 +51,11 @@ typedef struct H5O_hdr_info_t_f { } mesg; } H5O_hdr_info_t_f; -/* Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) - * interoperable with Fortran. +/* Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) */ typedef struct H5O_info_t_f { unsigned long fileno; /* File number that object is located in */ - haddr_t_f addr; /* Object address in file */ + H5O_token_t token; /* Token of object in file */ int type; /* Basic object type (group, dataset, etc.) */ int_f rc; /* Reference count of object */ int_f atime[8]; /* Access time */ @@ -64,13 +63,18 @@ typedef struct H5O_info_t_f { int_f ctime[8]; /* Change time */ int_f btime[8]; /* Birth time */ hsize_t num_attrs; /* # of attributes attached to object */ +} H5O_info_t_f; + +/* Information struct for native object (for H5Oget_native_info/H5Oget_native_info_by_name/H5Oget_native_info_by_idx) + */ +typedef struct H5O_native_info_t_f { H5O_hdr_info_t_f hdr; /* Object header information */ /* Extra metadata storage for obj & attributes */ struct { H5_ih_info_t_f obj; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */ H5_ih_info_t_f attr; /* v2 B-tree & heap for attributes */ } meta_size; -} H5O_info_t_f; +} H5O_native_info_t_f; /* @@ -312,12 +316,12 @@ H5_FCDLL int_f h5tconvert_c(hid_t_f *src_id, hid_t_f *dst_id, size_t_f *nelmts, H5_FCDLL int_f h5oopen_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id, hid_t_f *obj_id); H5_FCDLL int_f h5oclose_c(hid_t_f *object_id ); -H5_FCDLL int_f h5oopen_by_addr_c(hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id); +H5_FCDLL int_f h5oopen_by_token_c(hid_t_f *loc_id, H5O_token_t *token, hid_t_f *obj_id); H5_FCDLL int_f h5olink_c(hid_t_f *object_id, hid_t_f *new_loc_id, _fcd name, size_t_f *namelen, hid_t_f *lcpl_id, hid_t_f *lapl_id); -H5_FCDLL int_f h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data, int_f *fields); +H5_FCDLL int_f h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate2_t op, void *op_data, int_f *fields); H5_FCDLL int_f h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order, - H5O_iterate_t op, void *op_data, hid_t_f *lapl_id, int_f *fields ); + H5O_iterate2_t op, void *op_data, hid_t_f *lapl_id, int_f *fields ); H5_FCDLL int_f h5oget_info_c(hid_t_f *object_id, H5O_info_t_f *object_info, int_f *fields); H5_FCDLL int_f h5oget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info, int_f *fields); @@ -336,6 +340,8 @@ H5_FCDLL int_f h5oopen_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *gro H5_FCDLL int_f h5oget_comment_c(hid_t_f *object_id, _fcd comment, size_t_f *commentsize, hssize_t_f *bufsize); H5_FCDLL int_f h5oget_comment_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *name_size, _fcd comment, size_t_f *commentsize, size_t_f *bufsize, hid_t_f *lapl_id); +H5_FCDLL int_f h5otoken_cmp_c(hid_t_f *loc_id, H5O_token_t *token1, + H5O_token_t *token2, int_f *cmp_value); /* * Functions from H5Pf.c */ @@ -568,11 +574,11 @@ H5_FCDLL int_f h5ldelete_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *gr H5_FCDLL int_f h5lexists_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id, int_f *link_exists); H5_FCDLL int_f h5lget_info_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, int_f *cset, int_f *corder, int_f *corder_valid, int_f *link_type, - haddr_t_f *address, size_t_f *val_size, - hid_t_f *lapl_id); + H5O_token_t *token, size_t_f *val_size, hid_t_f *lapl_id); H5_FCDLL int_f h5lget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen, int_f *index_field, int_f *order, hsize_t_f *n, - int_f *link_type, int_f *corder_valid, int_f *corder, int_f *cset, haddr_t_f *address, size_t_f *val_size, hid_t_f *lapl_id); + int_f *link_type, int_f *corder_valid, int_f *corder, + int_f *cset, H5O_token_t *token, size_t_f *val_size, hid_t_f *lapl_id); H5_FCDLL int_f h5lis_registered_c(int_f *link_cls_id); H5_FCDLL int_f h5lmove_c(hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_namelen, hid_t_f *dest_loc_id, _fcd dest_name, size_t_f *dest_namelen, hid_t_f *lcpl_id, hid_t_f *lapl_id); @@ -582,8 +588,8 @@ H5_FCDLL int_f h5lget_name_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f * H5_FCDLL int_f h5lget_val_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, size_t_f *size, void *linkval_buff, hid_t_f *lapl_id) ; -H5_FCDLL int_f h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate_t op, void *op_data ); -H5_FCDLL int_f h5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate_t op, void *op_data, hid_t_f *lapl_id); +H5_FCDLL int_f h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate2_t op, void *op_data ); +H5_FCDLL int_f h5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate2_t op, void *op_data, hid_t_f *lapl_id); #endif /* _H5f90proto_H */ diff --git a/fortran/src/H5match_types.c b/fortran/src/H5match_types.c index e39e85a..2a6204d 100644 --- a/fortran/src/H5match_types.c +++ b/fortran/src/H5match_types.c @@ -414,13 +414,19 @@ int main(void) return -1; } - /* Need the buffer size for the fortran derive type 'hdset_reg_ref_t_f03' + /* Need the buffer size for the fortran derived type 'hdset_reg_ref_t_f03' * in order to be interoperable with C's structure, the C buffer size * H5R_DSET_REG_REF_BUF_SIZE is (sizeof(haddr_t)+4) */ - + fprintf(fort_header, " INTEGER, PARAMETER :: H5R_DSET_REG_REF_BUF_SIZE_F = %u\n", H5_SIZEOF_HADDR_T + 4 ); + /* Need the buffer size for the fortran derived type 'h5o_token_t' + * in order to be interoperable with C's structure. + */ + + fprintf(fort_header, " INTEGER, PARAMETER :: H5O_MAX_TOKEN_SIZE_F = %u\n", H5O_MAX_TOKEN_SIZE); + /* Close files */ endCfile(); endFfile(); diff --git a/fortran/src/README b/fortran/src/README index a258e07..f9316b5 100644 --- a/fortran/src/README +++ b/fortran/src/README @@ -87,7 +87,7 @@ Quick overview of the Fortran APIs to the file, a C program will read it as a 6x4 two-dimensional dataset into memory. The HDF5 C utilities h5dump and h5ls display transposed data, if data is written from a Fortran program. - + * Fortran indices are 1 based. ============================ @@ -105,29 +105,29 @@ Procedure to add a new function Procedure for passing C variables to Fortran --------------------------------------------- -(1) Find the C struct name you are interested in: +(1) Find the C struct name you are interested in: (a) src/H5public.h if it is a generic type, i.e. H5_* or - (b) src/H5*public.h if is a specific type, i.e. H5*_ - + (b) src/H5*public.h if is a specific type, i.e. H5*_ + (2) Put that structure into an array that will be passed to fortran in: (a) fortran/src/H5_f.c (add to nh5init_flags_c subroutine) (b) edit fortran/src/H5f90proto.h and edit nh5init_flags_c interface call - + (3) Edit the function call in fortran/src/H5_ff.F90 - (a) edit the call: FUNCTION h5init_flags_c + (a) edit the call: FUNCTION h5init_flags_c (b) edit h5init_flags_c call in h5open_f to match the number of arguments passing - -(4) add the size of the array and array to fortran/src/H5f90global.F90 + +(4) add the size of the array and array to fortran/src/H5f90global.F90 - must match the size found it H5_f.c -NOTE: To just add a default C value argument, do steps (2a) and (4) +NOTE: To just add a default C value argument, do steps (2a) and (4) Procedure for adding a new file to the repository -------------------------------------------------- -Add the name of the file to the: +Add the name of the file to the: (1) Makefile.am located in the same directory as the newfile (2) CMakeLists.txt located in the same directory as the newfile (3) MANIFEST located in the top level directory diff --git a/fortran/src/hdf5_fortrandll.def.in b/fortran/src/hdf5_fortrandll.def.in index e31a582..7e8b611 100644 --- a/fortran/src/hdf5_fortrandll.def.in +++ b/fortran/src/hdf5_fortrandll.def.in @@ -175,7 +175,7 @@ H5O_mp_H5OGET_COMMENT_F H5O_mp_H5OGET_COMMENT_BY_NAME_F H5O_mp_H5OINCR_REFCOUNT_F H5O_mp_H5OLINK_F -H5O_mp_H5OOPEN_BY_ADDR_F +H5O_mp_H5OOPEN_BY_TOKEN_F H5O_mp_H5OOPEN_BY_IDX_F H5O_mp_H5OOPEN_F H5O_mp_H5OSET_COMMENT_F @@ -185,6 +185,7 @@ H5O_mp_H5OGET_INFO_BY_NAME_F H5O_mp_H5OGET_INFO_F H5O_mp_H5OVISIT_BY_NAME_F H5O_mp_H5OVISIT_F +H5O_mp_H5OTOKEN_CMP_F ; H5P H5P_mp_H5PCREATE_F H5P_mp_H5PSET_PRESERVE_F @@ -459,6 +460,7 @@ H5VL_mp_H5VLREGISTER_CONNECTOR_BY_NAME_F H5VL_mp_H5VLREGISTER_CONNECTOR_BY_VALUE_F H5VL_mp_H5VLIS_CONNECTOR_REGISTERED_F H5VL_mp_H5VLGET_CONNECTOR_ID_F +H5VL_mp_H5VLGET_CONNECTOR_ID_BY_NAME_F H5VL_mp_H5VLGET_CONNECTOR_NAME_F H5VL_mp_H5VLCLOSE_F H5VL_mp_H5VLUNREGISTER_CONNECTOR_F diff --git a/fortran/test/CMakeLists.txt b/fortran/test/CMakeLists.txt index 4efd8a8..3c46c9e 100644 --- a/fortran/test/CMakeLists.txt +++ b/fortran/test/CMakeLists.txt @@ -517,4 +517,6 @@ else () add_dependencies (vol_connector ${HDF5_F90_TEST_LIBSH_TARGET}) endif () -include (CMakeTests.cmake) +if (HDF5_TEST_FORTRAN AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/fortran/test/tH5G_1_8.F90 b/fortran/test/tH5G_1_8.F90 index d3be525..58431a1 100644 --- a/fortran/test/tH5G_1_8.F90 +++ b/fortran/test/tH5G_1_8.F90 @@ -665,11 +665,11 @@ SUBROUTINE group_info(cleanup, fapl, total_error) ! H5L_TYPE_SOFT_F - Soft link ! H5L_TYPE_EXTERNAL_F - External link ! H5L_TYPE_ERROR _F - Error - INTEGER(HADDR_T) :: address ! If the link is a hard link, address specifies the file address that the link points to + TYPE(H5O_TOKEN_T_F) :: token ! If the link is a hard link, token specifies the object token that the link points to INTEGER(SIZE_T) :: val_size ! If the link is a symbolic link, val_size will be the length of the link value -! WRITE(*,*) "link creation (w/new group format)" + WRITE(*,*) "link creation (w/new group format)" ! Create a file CALL h5fcreate_f(FileName, H5F_ACC_TRUNC_F, file, error, H5P_DEFAULT_F, fapl) @@ -698,7 +698,7 @@ SUBROUTINE group_info(cleanup, fapl, total_error) CALL check("H5Lcreate_soft_f", error, total_error) CALL H5Lget_info_f(file, "grp1/soft", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error, H5P_DEFAULT_F) CALL check("H5Lget_info_f",error,total_error) @@ -770,7 +770,7 @@ SUBROUTINE group_info(cleanup, fapl, total_error) ! H5L_TYPE_SOFT_F - Soft link ! H5L_TYPE_EXTERNAL_F - External link ! H5L_TYPE_ERROR _F - Error - INTEGER(HADDR_T) :: address ! If the link is a hard link, address specifies the file address that the link points to + TYPE(H5O_TOKEN_T_F) :: token ! If the link is a hard link, token specifies the object token that the link points to INTEGER(SIZE_T) :: val_size ! If the link is a symbolic link, val_size will be the length of the link value INTEGER :: error @@ -816,7 +816,7 @@ SUBROUTINE group_info(cleanup, fapl, total_error) ! Get the group's link's information CALL H5Lget_info_f(file_id, "group", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error, H5P_DEFAULT_F) CALL check("H5Lget_info_f",error,total_error) @@ -1179,7 +1179,7 @@ SUBROUTINE delete_by_idx(cleanup, fapl, total_error) INTEGER :: cset ! Indicates the character set used for the attribute’s name INTEGER(SIZE_T) :: val_size INTEGER :: link_type - INTEGER(HADDR_T) :: address + TYPE(H5O_TOKEN_T_F) :: token INTEGER :: u ! Local index variable INTEGER :: Input1, i @@ -1309,10 +1309,10 @@ SUBROUTINE delete_by_idx(cleanup, fapl, total_error) ! HDmemset(&linfo, 0, sizeof(linfo)); CALL H5Lget_info_by_idx_f(group_id, ".", idx_type, iorder, INT(0,HSIZE_T), & - link_type, f_corder_valid, corder, cset, address, val_size, error) + link_type, f_corder_valid, corder, cset, token, val_size, error) - CALL H5Oopen_by_addr_f(group_id, address, grp, error) - CALL check("H5Oopen_by_addr_f", error, total_error) + CALL H5Oopen_by_token_f(group_id, token, grp, error) + CALL check("H5Oopen_by_token_f", error, total_error) CALL H5Iget_type_f(grp, id_type, error) CALL check("H5Iget_type_f", error, total_error) @@ -1357,11 +1357,11 @@ SUBROUTINE delete_by_idx(cleanup, fapl, total_error) ! Close the group creation property list CALL H5Pclose_f(gcpl_id, error) - CALL check("delete_by_idx.H5Gclose_f", error, total_error) + CALL check("delete_by_idx.H5Pclose_f", error, total_error) ! Close the file CALL H5Fclose_f(file_id, error) - CALL check("delete_by_idx.H5Gclose_f", error, total_error) + CALL check("delete_by_idx.H5Fclose_f", error, total_error) IF(cleanup) CALL h5_cleanup_f("file0", H5P_DEFAULT_F, error) CALL check("h5_cleanup_f", error, total_error) @@ -1407,7 +1407,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & INTEGER :: corder ! Is a positive integer containing the creation order of the attribute INTEGER :: cset ! Indicates the character set used for the attribute’s name INTEGER :: link_type - INTEGER(HADDR_T) :: address + TYPE(H5O_TOKEN_T_F) :: token INTEGER(SIZE_T) :: val_size ! Indicates the size, in the number of characters, of the attribute CHARACTER(LEN=7) :: tmpname ! Temporary link name @@ -1427,14 +1427,14 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & ! Verify the link information for first link, in increasing creation order ! HDmemset(&linfo, 0, sizeof(linfo)); CALL H5Lget_info_by_idx_f(group_id, ".", H5_INDEX_CRT_ORDER_F, H5_ITER_INC_F, INT(0,HSIZE_T), & - link_type, f_corder_valid, corder, cset, address, val_size, error) + link_type, f_corder_valid, corder, cset, token, val_size, error) CALL check("H5Lget_info_by_idx_f", error, total_error) CALL verify("H5Lget_info_by_idx_f", corder, 0, total_error) ! Verify the link information for new link, in increasing creation order ! HDmemset(&linfo, 0, sizeof(linfo)); CALL H5Lget_info_by_idx_f(group_id, ".", H5_INDEX_CRT_ORDER_F, H5_ITER_INC_F, INT(n,HSIZE_T), & - link_type, f_corder_valid, corder, cset, address, val_size, error) + link_type, f_corder_valid, corder, cset, token, val_size, error) CALL check("H5Lget_info_by_idx_f", error, total_error) CALL verify("H5Lget_info_by_idx_f", corder, n, total_error) @@ -1516,7 +1516,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & ! H5L_TYPE_SOFT_F - Soft link ! H5L_TYPE_EXTERNAL_F - External link ! H5L_TYPE_ERROR _F - Error - INTEGER(HADDR_T) :: address ! If the link is a hard link, address specifies the file address that the link points to + TYPE(H5O_TOKEN_T_F) :: token ! If the link is a hard link, token specifies the object token that the link points to INTEGER(SIZE_T) :: val_size ! If the link is a symbolic link, val_size will be the length of the link value CHARACTER(LEN=1024) :: filename = 'tempfile.h5' @@ -1555,7 +1555,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & ! Check that its character encoding is the default CALL H5Lget_info_f(file_id, "group", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error, H5P_DEFAULT_F) ! File-wide default character encoding can not yet be set via the file @@ -1575,7 +1575,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & ! Check that its character encoding is the default CALL H5Lget_info_f(file_id, "type", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("h5tclose_f", error, total_error) @@ -1636,7 +1636,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & ! Check that its character encoding is the default CALL H5Lget_info_f(file_id, "dataset", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("H5Lget_info_f", error, total_error) @@ -1661,7 +1661,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & ! Check that its character encoding is UTF-8 CALL H5Lget_info_f(file_id, "group2", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("H5Lget_info_f", error, total_error) CALL verify("H5Lget_info_f",cset, H5T_CSET_UTF8_F,total_error) @@ -1679,7 +1679,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & ! Check that its character encoding is UTF-8 CALL H5Lget_info_f(file_id, "type2", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("H5Lget_info_f", error, total_error) CALL verify("H5Lget_info_f",cset, H5T_CSET_UTF8_F,total_error) @@ -1697,7 +1697,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & ! Check that its character encoding is UTF-8 CALL H5Lget_info_f(file_id, "dataset2", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("H5Lget_info_f", error, total_error) CALL verify("H5Lget_info_f2",cset, H5T_CSET_UTF8_F,total_error) @@ -1719,7 +1719,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & ! Check that its character encoding is ASCII CALL H5Lget_info_f(file_id, "/dataset2_link", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("H5Lget_info_f", error, total_error) CALL verify("H5Lget_info_f",cset, H5T_CSET_ASCII_F,total_error) @@ -1727,7 +1727,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & ! Check that the first link's encoding hasn't changed CALL H5Lget_info_f(file_id, "/dataset2", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("H5Lget_info_f", error, total_error) CALL verify("H5Lget_info_f3",cset, H5T_CSET_UTF8_F,total_error) @@ -1742,7 +1742,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & CALL check("H5Lcreate_soft_f", error, total_error) CALL H5Lget_info_f(file_id, "slink_to_dset2", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("H5Lget_info_f", error, total_error) CALL verify("H5Lget_info_f",cset, H5T_CSET_UTF8_F,total_error) @@ -1756,7 +1756,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & CALL check("H5Lmove_f",error, total_error) CALL H5Lget_info_f(file_id, "moved_slink", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("H5Lget_info_f", error, total_error) CALL verify("H5Lget_info_f",cset, H5T_CSET_ASCII_F,total_error) @@ -1770,7 +1770,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & CALL H5Lcopy_f(file_id, "moved_slink", file_id, "copied_slink", error, lcpl_id) CALL H5Lget_info_f(file_id, "copied_slink", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("H5Lget_info_f", error, total_error) CALL verify("H5Lget_info_f",cset, H5T_CSET_UTF8_F,total_error) @@ -1782,7 +1782,7 @@ SUBROUTINE link_info_by_idx_check(group_id, linkname, n, & CALL check("H5Lcreate_external_f", error, total_error) CALL H5Lget_info_f(file_id, "extlink", & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & error) CALL check("H5Lget_info_f", error, total_error) CALL verify("H5Lget_info_f",cset, H5T_CSET_UTF8_F,total_error) diff --git a/fortran/test/tH5O_F03.F90 b/fortran/test/tH5O_F03.F90 index 5b446a4..c9ecccc 100644 --- a/fortran/test/tH5O_F03.F90 +++ b/fortran/test/tH5O_F03.F90 @@ -63,27 +63,33 @@ MODULE visit_cb CONTAINS -! Compares the field values of a C h5O_info_t and a Fortran H5O_info_t. +! Compares the field values of a C H5O_info_t and a Fortran H5O_info_t. + + INTEGER FUNCTION compare_h5o_info_t( loc_id, oinfo_f, oinfo_c, field, full_f_field ) RESULT(status) - INTEGER FUNCTION compare_h5o_info_t( oinfo_f, oinfo_c, field, full_f_field ) RESULT(status) - IMPLICIT NONE + INTEGER(HID_T) :: loc_id TYPE(h5o_info_t) :: oinfo_f TYPE(c_h5o_info_t) :: oinfo_c + TYPE(H5O_TOKEN_T_F) :: token_c INTEGER :: field - LOGICAL :: full_f_field ! All the fields of Fortran H5O_info_t where filled + LOGICAL :: full_f_field ! All the fields of Fortran H5O_info_t where filled ! local INTEGER(C_INT), DIMENSION(1:8) :: atime, btime, ctime, mtime + INTEGER :: cmp_value INTEGER :: i + INTEGER :: ierr status = 0 - + IF( (field .EQ. H5O_INFO_BASIC_F).OR.(field .EQ. H5O_INFO_ALL_F) )THEN IF( (oinfo_f%fileno.LE.0) .OR. (oinfo_c%fileno .NE. oinfo_f%fileno) )THEN status = -1 RETURN ENDIF - IF( (oinfo_f%addr.LE.0) .OR. (oinfo_c%addr .NE. oinfo_f%addr) )THEN + token_c%token = oinfo_c%token%token + CALL H5Otoken_cmp_f(loc_id, oinfo_f%token, token_c, cmp_value, ierr); + IF( (ierr .EQ. -1) .OR. (cmp_value .NE. 0) ) THEN status = -1 RETURN ENDIF @@ -131,26 +137,12 @@ CONTAINS ! check other field values are not filled (using only a small subset to check) status = 0 IF( oinfo_c%fileno .NE. oinfo_f%fileno) status = status + 1 - IF( oinfo_c%addr .NE. oinfo_f%addr) status = status + 1 - IF( oinfo_c%type .NE. oinfo_f%type) status = status + 1 - IF( oinfo_c%rc .NE. oinfo_f%rc) status = status + 1 - IF(status.EQ.0) THEN ! There was no difference found, which is only possible if the field was filled. - status = -1 - RETURN - ENDIF - status = 0 ! reset - ENDIF - - IF((field .EQ. H5O_INFO_NUM_ATTRS_F).OR.(field .EQ. H5O_INFO_ALL_F))THEN - IF( (oinfo_f%num_attrs.LT.0) .OR. (oinfo_c%num_attrs .NE. oinfo_f%num_attrs) )THEN + token_c%token = oinfo_c%token%token + CALL H5Otoken_cmp_f(loc_id, oinfo_f%token, token_c, cmp_value, ierr); + IF( (ierr .EQ. -1) .OR. (cmp_value .NE. 0) ) THEN status = -1 RETURN ENDIF - ELSE IF( field .EQ. H5O_INFO_ALL_F.AND.full_f_field)THEN - ! check other field values are not filled (using only a small subset to check) - status = 0 - IF( oinfo_c%fileno .NE. oinfo_f%fileno) status = status + 1 - IF( oinfo_c%addr .NE. oinfo_f%addr) status = status + 1 IF( oinfo_c%type .NE. oinfo_f%type) status = status + 1 IF( oinfo_c%rc .NE. oinfo_f%rc) status = status + 1 IF(status.EQ.0) THEN ! There was no difference found, which is only possible if the field was filled. @@ -158,85 +150,23 @@ CONTAINS RETURN ENDIF status = 0 ! reset - ENDIF - IF((field).EQ.H5O_INFO_HDR_F.OR.(field .EQ. H5O_INFO_ALL_F))THEN - IF( (oinfo_f%hdr%version.LT.0) .OR. (oinfo_c%hdr%version .NE. oinfo_f%hdr%version) )THEN - status = -1 - RETURN - ENDIF - IF( (oinfo_f%hdr%nmesgs.LT.0) .OR. (oinfo_c%hdr%nmesgs .NE. oinfo_f%hdr%nmesgs) )THEN - status = -1 - RETURN - ENDIF - IF( (oinfo_f%hdr%nchunks.LT.0) .OR. (oinfo_c%hdr%nchunks .NE. oinfo_f%hdr%nchunks) )THEN - status = -1 - RETURN - ENDIF - IF( (oinfo_f%hdr%flags.LT.0) .OR. (oinfo_c%hdr%flags .NE. oinfo_f%hdr%flags) )THEN - status = -1 - RETURN - ENDIF - IF( (oinfo_f%hdr%space%total.LT.0) .OR. (oinfo_c%hdr%space%total .NE. oinfo_f%hdr%space%total) )THEN - status = -1 - RETURN - ENDIF - IF( (oinfo_f%hdr%space%meta.LT.0) .OR. (oinfo_c%hdr%space%meta .NE. oinfo_f%hdr%space%meta) )THEN - status = -1 - RETURN - ENDIF - IF( (oinfo_f%hdr%space%mesg.LT.0) .OR. (oinfo_c%hdr%space%mesg .NE. oinfo_f%hdr%space%mesg) )THEN - status = -1 - RETURN - ENDIF - IF( (oinfo_f%hdr%space%free.LT.0) .OR. (oinfo_c%hdr%space%free .NE. oinfo_f%hdr%space%free) )THEN - status = -1 - RETURN - ENDIF - IF( (oinfo_f%hdr%mesg%present.LT.0) .OR. (oinfo_c%hdr%mesg%present .NE. oinfo_f%hdr%mesg%present) )THEN - status = -1 - RETURN - ENDIF - IF( (oinfo_f%hdr%mesg%shared.LT.0) .OR. (oinfo_c%hdr%mesg%shared .NE. oinfo_f%hdr%mesg%shared) )THEN + IF((field .EQ. H5O_INFO_NUM_ATTRS_F).OR.(field .EQ. H5O_INFO_ALL_F))THEN + IF( (oinfo_f%num_attrs.LT.0) .OR. (oinfo_c%num_attrs .NE. oinfo_f%num_attrs) )THEN status = -1 RETURN ENDIF - ELSE IF( field .EQ. H5O_INFO_HDR_F.AND.full_f_field)THEN + ELSE IF( field .EQ. H5O_INFO_ALL_F.AND.full_f_field)THEN ! check other field values are not filled (using only a small subset to check) status = 0 IF( oinfo_c%fileno .NE. oinfo_f%fileno) status = status + 1 - IF( oinfo_c%addr .NE. oinfo_f%addr) status = status + 1 - IF( oinfo_c%type .NE. oinfo_f%type) status = status + 1 - IF( oinfo_c%rc .NE. oinfo_f%rc) status = status + 1 - IF(status.EQ.0) THEN ! There was no difference found, which is only possible if the field was filled. - status = -1 - RETURN - ENDIF - status = 0 ! reset - ENDIF - IF((field).EQ.H5O_INFO_META_SIZE_F.OR.(field .EQ. H5O_INFO_ALL_F))THEN - IF((oinfo_f%meta_size%obj%index_size.LT.0).OR.(oinfo_c%meta_size%obj%index_size.NE.oinfo_f%meta_size%obj%index_size))THEN - status = -1 - RETURN - ENDIF - IF((oinfo_f%meta_size%obj%heap_size.LT.0).OR.(oinfo_c%meta_size%obj%heap_size.NE.oinfo_f%meta_size%obj%heap_size))THEN - status = -1 - RETURN - ENDIF - IF((oinfo_f%meta_size%attr%index_size.LT.0).OR.(oinfo_c%meta_size%attr%index_size.NE.oinfo_f%meta_size%attr%index_size))THEN - status = -1 - RETURN - ENDIF - IF((oinfo_f%meta_size%attr%heap_size.LT.0).OR.(oinfo_c%meta_size%attr%heap_size.NE.oinfo_f%meta_size%attr%heap_size))THEN + token_c%token = oinfo_c%token%token + CALL H5Otoken_cmp_f(loc_id, oinfo_f%token, token_c, cmp_value, ierr); + IF( (ierr .EQ. -1) .OR. (cmp_value .NE. 0) ) THEN status = -1 RETURN ENDIF - ELSE IF( field .EQ. H5O_INFO_META_SIZE_F.AND.full_f_field)THEN - ! check other field values are not filled (using only a small subset to check) - status = 0 - IF( oinfo_c%fileno .NE. oinfo_f%fileno) status = status + 1 - IF( oinfo_c%addr .NE. oinfo_f%addr) status = status + 1 IF( oinfo_c%type .NE. oinfo_f%type) status = status + 1 IF( oinfo_c%rc .NE. oinfo_f%rc) status = status + 1 IF(status.EQ.0) THEN ! There was no difference found, which is only possible if the field was filled. @@ -295,13 +225,13 @@ CONTAINS IF(op_data%field .EQ. H5O_INFO_ALL_F)THEN idx = op_data%idx - + DO i = 1, len IF(op_data%info(idx)%path(i)(1:1) .NE. name(i)(1:1))THEN visit_obj_cb = -1 RETURN ENDIF - + IF(op_data%info(idx)%type_obj .NE. oinfo_c%type)THEN visit_obj_cb = -1 RETURN @@ -310,14 +240,14 @@ CONTAINS ENDIF - ! Check H5Oget_info_by_name_f; if partial field values where filled correctly + ! Check H5Oget_info_by_name_f; if partial field values were filled correctly CALL H5Oget_info_by_name_f(group_id, name2, oinfo_f, ierr); - visit_obj_cb = compare_h5o_info_t( oinfo_f, oinfo_c, op_data%field, .TRUE. ) + visit_obj_cb = compare_h5o_info_t( group_id, oinfo_f, oinfo_c, op_data%field, .TRUE. ) IF(visit_obj_cb.EQ.-1) RETURN ! Check H5Oget_info_by_name_f, only check field values CALL H5Oget_info_by_name_f(group_id, name2, oinfo_f, ierr, fields = op_data%field); - visit_obj_cb = compare_h5o_info_t( oinfo_f, oinfo_c, op_data%field, .FALSE. ) + visit_obj_cb = compare_h5o_info_t(group_id, oinfo_f, oinfo_c, op_data%field, .FALSE. ) IF(visit_obj_cb.EQ.-1) RETURN @@ -325,12 +255,12 @@ CONTAINS ! Check H5Oget_info_f, only check field values CALL H5Oget_info_f(group_id, oinfo_f, ierr, fields = op_data%field); - visit_obj_cb = compare_h5o_info_t( oinfo_f, oinfo_c, op_data%field, .FALSE. ) + visit_obj_cb = compare_h5o_info_t(group_id, oinfo_f, oinfo_c, op_data%field, .FALSE. ) IF(visit_obj_cb.EQ.-1) RETURN ! Check H5Oget_info_f; if partial field values where filled correctly CALL H5Oget_info_f(group_id, oinfo_f, ierr); - visit_obj_cb = compare_h5o_info_t( oinfo_f, oinfo_c, op_data%field, .TRUE. ) + visit_obj_cb = compare_h5o_info_t(group_id, oinfo_f, oinfo_c, op_data%field, .TRUE. ) IF(visit_obj_cb.EQ.-1) RETURN ENDIF @@ -583,20 +513,6 @@ SUBROUTINE test_obj_visit(total_error) IF(ret_val.LT.0)THEN CALL check("h5ovisit_f", -1, total_error) ENDIF - udata%field = H5O_INFO_HDR_F - udata%idx = 1 - CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) - CALL check("h5ovisit_f", error, total_error) - IF(ret_val.LT.0)THEN - CALL check("h5ovisit_f", -1, total_error) - ENDIF - udata%field = H5O_INFO_META_SIZE_F - udata%idx = 1 - CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) - CALL check("h5ovisit_f", error, total_error) - IF(ret_val.LT.0)THEN - CALL check("h5ovisit_f", -1, total_error) - ENDIF ! Test h5ovisit_by_name_f object_name = "/" @@ -630,21 +546,7 @@ SUBROUTINE test_obj_visit(total_error) IF(ret_val.LT.0)THEN CALL check("h5ovisit_by_name_f", -1, total_error) ENDIF - udata%idx = 1 - udata%field = H5O_INFO_HDR_F - CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) - CALL check("h5ovisit_by_name_f", error, total_error) - IF(ret_val.LT.0)THEN - CALL check("h5ovisit_by_name_f", -1, total_error) - ENDIF - udata%idx = 1 - udata%field = H5O_INFO_META_SIZE_F - CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) - CALL check("h5ovisit_by_name_f", error, total_error) - IF(ret_val.LT.0)THEN - CALL check("h5ovisit_by_name_f", -1, total_error) - ENDIF - + CALL h5fclose_f(fid, error) CALL check("h5fclose_f",error, total_error) diff --git a/fortran/test/vol_connector.F90 b/fortran/test/vol_connector.F90 index aabb2b8..cd05cb1 100644 --- a/fortran/test/vol_connector.F90 +++ b/fortran/test/vol_connector.F90 @@ -74,8 +74,8 @@ CONTAINS CALL check("H5VLis_connector_registered_f",error,total_error) CALL VERIFY("H5VLis_connector_registered_f", is_registered, .TRUE., total_error) - CALL H5VLget_connector_id_f(NATIVE_VOL_CONNECTOR_NAME, vol_id_out, error) - CALL check("H5VLget_connector_id_f",error,total_error) + CALL H5VLget_connector_id_by_name_f(NATIVE_VOL_CONNECTOR_NAME, vol_id_out, error) + CALL check("H5VLget_connector_id_by_name_f",error,total_error) CALL H5Fcreate_f("voltest.h5",H5F_ACC_TRUNC_F, file_id, error) CALL check("H5F_create_f",error,total_error) @@ -201,9 +201,9 @@ CONTAINS CALL VERIFY("H5Pget_vol_id_f", vol_id_out, vol_id, total_error) ENDIF - CALL H5VLget_connector_id_f(NATIVE_VOL_CONNECTOR_NAME, vol_id_out, error) - CALL check("H5VLget_connector_id_f",error,total_error) - CALL VERIFY("H5VLget_connector_id_f", vol_id_out, vol_id, total_error) + CALL H5VLget_connector_id_by_name_f(NATIVE_VOL_CONNECTOR_NAME, vol_id_out, error) + CALL check("H5VLget_connector_id_by_name_f",error,total_error) + CALL VERIFY("H5VLget_connector_id_by_name_f", vol_id_out, vol_id, total_error) CALL H5Fcreate_f("voltest.h5",H5F_ACC_TRUNC_F, file_id, error, H5P_DEFAULT_F, fapl_id) CALL check("H5F_create_f",error,total_error) diff --git a/fortran/testpar/CMakeLists.txt b/fortran/testpar/CMakeLists.txt index 0fe641f..17aa6c3 100644 --- a/fortran/testpar/CMakeLists.txt +++ b/fortran/testpar/CMakeLists.txt @@ -45,4 +45,6 @@ set_target_properties (parallel_test PROPERTIES ) endif () -include (CMakeTests.cmake) +if (HDF5_TEST_FORTRAN AND HDF5_TEST_PARALLEL) + include (CMakeTests.cmake) +endif () diff --git a/hl/CMakeLists.txt b/hl/CMakeLists.txt index 2a71b47..bef034c 100644 --- a/hl/CMakeLists.txt +++ b/hl/CMakeLists.txt @@ -19,7 +19,7 @@ endif () #-- Build the Unit testing if requested if (NOT HDF5_EXTERNALLY_CONFIGURED) - if (BUILD_TESTING) + if (BUILD_TESTING AND HDF5_TEST_SERIAL) add_subdirectory (test) endif () endif () diff --git a/hl/c++/examples/CMakeLists.txt b/hl/c++/examples/CMakeLists.txt index 50e08e8..4bd4807 100644 --- a/hl/c++/examples/CMakeLists.txt +++ b/hl/c++/examples/CMakeLists.txt @@ -23,6 +23,6 @@ else () endif () set_target_properties (ptExampleFL PROPERTIES FOLDER examples/hl/cpp) -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_CPP AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL) include (CMakeTests.cmake) endif () diff --git a/hl/c++/test/CMakeLists.txt b/hl/c++/test/CMakeLists.txt index cfb24a8..429e5c7 100644 --- a/hl/c++/test/CMakeLists.txt +++ b/hl/c++/test/CMakeLists.txt @@ -24,4 +24,6 @@ else () endif () set_target_properties (hl_ptableTest PROPERTIES FOLDER test/hl/cpp) -include (CMakeTests.cmake) +if (HDF5_TEST_CPP AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/hl/examples/CMakeLists.txt b/hl/examples/CMakeLists.txt index 86c1770..44115e5 100644 --- a/hl/examples/CMakeLists.txt +++ b/hl/examples/CMakeLists.txt @@ -39,8 +39,6 @@ foreach (example ${examples}) set_target_properties (hl_ex_${example} PROPERTIES FOLDER examples/hl) endforeach () -if (BUILD_TESTING) - +if (BUILD_TESTING AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL) include (CMakeTests.cmake) - endif () diff --git a/hl/fortran/examples/CMakeLists.txt b/hl/fortran/examples/CMakeLists.txt index e41b8fe..449194e 100644 --- a/hl/fortran/examples/CMakeLists.txt +++ b/hl/fortran/examples/CMakeLists.txt @@ -52,6 +52,6 @@ foreach (example ${examples}) endif () endforeach () -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_FORTRAN AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL) include (CMakeTests.cmake) endif () diff --git a/hl/fortran/test/CMakeLists.txt b/hl/fortran/test/CMakeLists.txt index c152142..369692d 100644 --- a/hl/fortran/test/CMakeLists.txt +++ b/hl/fortran/test/CMakeLists.txt @@ -61,4 +61,6 @@ foreach (h5_test ${H5_TESTS}) ADD_H5_FORTRAN_EXE(${h5_test}) endforeach () -include (CMakeTests.cmake) +if (HDF5_TEST_FORTRAN AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/hl/src/H5DS.c b/hl/src/H5DS.c index c91ea1f..63fb461 100644 --- a/hl/src/H5DS.c +++ b/hl/src/H5DS.c @@ -140,10 +140,10 @@ herr_t H5DSattach_scale(hid_t did, hobj_ref_t ref_j; /* iterator reference */ hvl_t *buf = NULL; /* VL buffer to store in the attribute */ hid_t dsid_j; /* DS dataset ID in DIMENSION_LIST */ - H5O_info_t oi1, oi2; + H5O_info2_t oi1, oi2; H5I_type_t it1, it2; int i; - size_t len; + size_t len; int found_ds=0; htri_t is_scale; @@ -156,20 +156,26 @@ herr_t H5DSattach_scale(hid_t did, return FAIL; /* the dataset cannot be a DS dataset */ - if ( is_scale == 1) + if (is_scale == 1) return FAIL; /* get info for the dataset in the parameter list */ - if(H5Oget_info2(did, &oi1, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did, &oi1, H5O_INFO_BASIC) < 0) return FAIL; /* get info for the scale in the parameter list */ - if(H5Oget_info2(dsid, &oi2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(dsid, &oi2, H5O_INFO_BASIC) < 0) return FAIL; /* same object, not valid */ - if(oi1.fileno == oi2.fileno && oi1.addr == oi2.addr) - return FAIL; + if(oi1.fileno == oi2.fileno) { + int token_cmp; + + if(H5Otoken_cmp(did, &oi1.token, &oi2.token, &token_cmp) < 0) + return FAIL; + if(!token_cmp) + return FAIL; + } /* end if */ /* get ID type */ if ((it1 = H5Iget_type(did)) < 0) @@ -324,16 +330,22 @@ herr_t H5DSattach_scale(hid_t did, goto out; /* get info for DS in the parameter list */ - if(H5Oget_info2(dsid, &oi1, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(dsid, &oi1, H5O_INFO_BASIC) < 0) goto out; /* get info for this DS */ - if(H5Oget_info2(dsid_j, &oi2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(dsid_j, &oi2, H5O_INFO_BASIC) < 0) goto out; /* same object, so this DS scale is already in this DIM IDX */ - if(oi1.fileno == oi2.fileno && oi1.addr == oi2.addr) - found_ds = 1; + if(oi1.fileno == oi2.fileno) { + int token_cmp; + + if(H5Otoken_cmp(did, &oi1.token, &oi2.token, &token_cmp) < 0) + goto out; + if(!token_cmp) + found_ds = 1; + } /* end if */ /* close the dereferenced dataset */ if(H5Dclose(dsid_j) < 0) @@ -586,7 +598,7 @@ herr_t H5DSdetach_scale(hid_t did, int i; size_t j; hssize_t ii; - H5O_info_t did_oi, dsid_oi, tmp_oi; + H5O_info2_t did_oi, dsid_oi, tmp_oi; int found_dset = 0, found_ds = 0; int have_ds = 0; htri_t is_scale; @@ -609,16 +621,22 @@ herr_t H5DSdetach_scale(hid_t did, return FAIL; /* get info for the dataset in the parameter list */ - if(H5Oget_info2(did, &did_oi, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did, &did_oi, H5O_INFO_BASIC) < 0) return FAIL; /* get info for the scale in the parameter list */ - if(H5Oget_info2(dsid, &dsid_oi, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(dsid, &dsid_oi, H5O_INFO_BASIC) < 0) return FAIL; /* same object, not valid */ - if(did_oi.fileno == dsid_oi.fileno && did_oi.addr == dsid_oi.addr) - return FAIL; + if(did_oi.fileno == dsid_oi.fileno) { + int token_cmp; + + if(H5Otoken_cmp(did, &did_oi.token, &dsid_oi.token, &token_cmp) < 0) + return FAIL; + if(!token_cmp) + return FAIL; + } /* end if */ /*------------------------------------------------------------------------- @@ -696,7 +714,7 @@ herr_t H5DSdetach_scale(hid_t did, goto out; /* get info for this DS */ - if(H5Oget_info2(dsid_j, &tmp_oi, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(dsid_j, &tmp_oi, H5O_INFO_BASIC) < 0) goto out; /* Close the dereferenced dataset */ @@ -704,30 +722,35 @@ herr_t H5DSdetach_scale(hid_t did, goto out; /* same object, reset */ - if(dsid_oi.fileno == tmp_oi.fileno && dsid_oi.addr == tmp_oi.addr) - { - /* If there are more than one reference in the VL element - and the reference we found is not the last one, - copy the last one to replace the found one since the order - of the references doesn't matter according to the spec; - reduce the size of the VL element by 1; - if the length of the element becomes 0, free the pointer - and reset to NULL */ - - size_t len = buf[idx].len; - - if(j < len - 1) - ((hobj_ref_t *)buf[idx].p)[j] = ((hobj_ref_t *)buf[idx].p)[len-1]; - len = --buf[idx].len; - if(len == 0) { - HDfree(buf[idx].p); - buf[idx].p = NULL; - } - /* Since a reference to a dim. scale can be inserted only once, - we do not need to continue the search if it is found */ - found_ds = 1; - break; - } + if(dsid_oi.fileno == tmp_oi.fileno) { + int token_cmp; + + if(H5Otoken_cmp(did, &dsid_oi.token, &tmp_oi.token, &token_cmp) < 0) + goto out; + if(!token_cmp) { + /* If there are more than one reference in the VL element + and the reference we found is not the last one, + copy the last one to replace the found one since the order + of the references doesn't matter according to the spec; + reduce the size of the VL element by 1; + if the length of the element becomes 0, free the pointer + and reset to NULL */ + + size_t len = buf[idx].len; + + if(j < len - 1) + ((hobj_ref_t *)buf[idx].p)[j] = ((hobj_ref_t *)buf[idx].p)[len-1]; + len = --buf[idx].len; + if(len == 0) { + HDfree(buf[idx].p); + buf[idx].p = NULL; + } + /* Since a reference to a dim. scale can be inserted only once, + we do not need to continue the search if it is found */ + found_ds = 1; + break; + } /* end if */ + } /* end if */ } /* j */ } /* if */ @@ -806,7 +829,7 @@ herr_t H5DSdetach_scale(hid_t did, goto out; /* get info for this dataset */ - if(H5Oget_info2(did_i, &tmp_oi, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did_i, &tmp_oi, H5O_INFO_BASIC) < 0) goto out; /* close the dereferenced dataset */ @@ -814,13 +837,19 @@ herr_t H5DSdetach_scale(hid_t did, goto out; /* same object, reset. we want to detach only for this DIM */ - if(did_oi.fileno == tmp_oi.fileno && did_oi.addr == tmp_oi.addr) { - /* copy the last one to replace the one which is found */ - dsbuf[ii] = dsbuf[nelmts-1]; - nelmts--; - found_dset=1; - break; - } /* if */ + if(did_oi.fileno == tmp_oi.fileno) { + int token_cmp; + + if(H5Otoken_cmp(did, &did_oi.token, &tmp_oi.token, &token_cmp) < 0) + goto out; + if(!token_cmp) { + /* copy the last one to replace the one which is found */ + dsbuf[ii] = dsbuf[nelmts-1]; + nelmts--; + found_dset=1; + break; + } /* end if */ + } /* end if */ } /* if we have the same dimension index */ } /* ii */ @@ -954,7 +983,7 @@ htri_t H5DSis_attached(hid_t did, hvl_t *buf = NULL; /* VL buffer to store in the attribute */ hid_t dsid_j; /* DS dataset ID in DIMENSION_LIST */ hid_t did_i; /* dataset ID in REFERENCE_LIST */ - H5O_info_t oi1, oi2, oi3, oi4; + H5O_info2_t oi1, oi2, oi3, oi4; H5I_type_t it1, it2; int i; int found_dset=0, found_ds=0; @@ -973,16 +1002,22 @@ htri_t H5DSis_attached(hid_t did, return FAIL; /* get info for the dataset in the parameter list */ - if(H5Oget_info2(did, &oi1, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did, &oi1, H5O_INFO_BASIC) < 0) return FAIL; /* get info for the scale in the parameter list */ - if(H5Oget_info2(dsid, &oi2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(dsid, &oi2, H5O_INFO_BASIC) < 0) return FAIL; /* same object, not valid */ - if(oi1.fileno == oi2.fileno && oi1.addr == oi2.addr) - return FAIL; + if(oi1.fileno == oi2.fileno) { + int token_cmp; + + if(H5Otoken_cmp(did, &oi1.token, &oi2.token, &token_cmp) < 0) + return FAIL; + if(!token_cmp) + return FAIL; + } /* end if */ /* get ID type */ if ((it1 = H5Iget_type(did)) < 0) @@ -1054,16 +1089,22 @@ htri_t H5DSis_attached(hid_t did, goto out; /* get info for DS in the parameter list */ - if(H5Oget_info2(dsid, &oi1, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(dsid, &oi1, H5O_INFO_BASIC) < 0) goto out; /* get info for this DS */ - if(H5Oget_info2(dsid_j, &oi2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(dsid_j, &oi2, H5O_INFO_BASIC) < 0) goto out; /* same object */ - if(oi1.fileno == oi2.fileno && oi1.addr == oi2.addr) - found_ds = 1; + if(oi1.fileno == oi2.fileno) { + int token_cmp; + + if(H5Otoken_cmp(did, &oi1.token, &oi2.token, &token_cmp) < 0) + goto out; + if(!token_cmp) + found_ds = 1; + } /* end if */ /* close the dereferenced dataset */ if (H5Dclose(dsid_j) < 0) @@ -1144,16 +1185,22 @@ htri_t H5DSis_attached(hid_t did, goto out; /* get info for dataset in the parameter list */ - if(H5Oget_info2(did, &oi3, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did, &oi3, H5O_INFO_BASIC) < 0) goto out; /* get info for this dataset */ - if(H5Oget_info2(did_i, &oi4, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did_i, &oi4, H5O_INFO_BASIC) < 0) goto out; /* same object */ - if(oi3.fileno == oi4.fileno && oi3.addr == oi4.addr && idx==dsbuf[i].dim_idx) - found_dset=1; + if(oi3.fileno == oi4.fileno) { + int token_cmp; + + if(H5Otoken_cmp(did, &oi3.token, &oi4.token, &token_cmp) < 0) + goto out; + if(!token_cmp && (idx == dsbuf[i].dim_idx)) + found_dset=1; + } /* end if */ /* close the dereferenced dataset */ if (H5Dclose(did_i) < 0) diff --git a/hl/src/H5LT.c b/hl/src/H5LT.c index bb72ce6..3f6c538 100644 --- a/hl/src/H5LT.c +++ b/hl/src/H5LT.c @@ -1360,7 +1360,7 @@ out: */ static herr_t -find_dataset(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *op_data) +find_dataset(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *op_data) { /* Define a default zero value for return. This will cause the iterator to continue if * the dataset is not found yet. @@ -1411,7 +1411,7 @@ find_dataset(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *op_d herr_t H5LTfind_dataset( hid_t loc_id, const char *dset_name ) { - return H5Literate(loc_id, H5_INDEX_NAME, H5_ITER_INC, 0, find_dataset, (void *)dset_name); + return H5Literate2(loc_id, H5_INDEX_NAME, H5_ITER_INC, 0, find_dataset, (void *)dset_name); } diff --git a/hl/test/CMakeLists.txt b/hl/test/CMakeLists.txt index 2959c6c..69f3dae 100644 --- a/hl/test/CMakeLists.txt +++ b/hl/test/CMakeLists.txt @@ -93,4 +93,6 @@ if (HDF5_BUILD_GENERATORS AND NOT ONLY_SHARED_LIBS) set_target_properties (hl_gen_test_ld PROPERTIES FOLDER test/hl/gen) endif () -include (CMakeTests.cmake) +if (HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/hl/tools/gif2h5/CMakeLists.txt b/hl/tools/gif2h5/CMakeLists.txt index 3cd913f..e12588b 100644 --- a/hl/tools/gif2h5/CMakeLists.txt +++ b/hl/tools/gif2h5/CMakeLists.txt @@ -67,7 +67,7 @@ if (BUILD_SHARED_LIBS) ) endif () -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_SERIAL) # -------------------------------------------------------------------- # This executable can generate the actual test files - Currently not # used in the CMake Build system as we rely on the test files that are @@ -83,7 +83,9 @@ if (BUILD_TESTING) # add_test (NAME hl_h52gifgentest COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:hl_h52gifgentest>) endif () - include (CMakeTests.cmake) + if (HDF5_TEST_TOOLS) + include (CMakeTests.cmake) + endif () endif () #----------------------------------------------------------------------------- diff --git a/hl/tools/h5watch/CMakeLists.txt b/hl/tools/h5watch/CMakeLists.txt index b3d65f7..edb78c0 100644 --- a/hl/tools/h5watch/CMakeLists.txt +++ b/hl/tools/h5watch/CMakeLists.txt @@ -26,7 +26,7 @@ if (BUILD_SHARED_LIBS) set (H5_DEP_EXECUTABLES ${H5_DEP_EXECUTABLES} h5watch-shared) endif () -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_SWMR AND HDF5_TEST_SERIAL) #-- Add swmr_check_compat_vfd program set (hl_swmr_check_compat_vfd_SOURCES ${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/swmr_check_compat_vfd.c @@ -68,7 +68,9 @@ if (BUILD_TESTING) endif () set_target_properties (h5watchgentest PROPERTIES FOLDER generator/tools/hl) - include (CMakeTests.cmake) + if (HDF5_TEST_TOOLS) + include (CMakeTests.cmake) + endif () endif () #----------------------------------------------------------------------------- diff --git a/java/examples/datasets/CMakeLists.txt b/java/examples/datasets/CMakeLists.txt index 8849524..02b9fdf 100644 --- a/java/examples/datasets/CMakeLists.txt +++ b/java/examples/datasets/CMakeLists.txt @@ -71,7 +71,7 @@ foreach (HDFJAVA_JAR ${CMAKE_JAVA_INCLUDE_PATH}) set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${HDFJAVA_JAR}") endforeach () -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL) get_property (target_name TARGET ${HDF5_JAVA_JNI_LIB_TARGET} PROPERTY OUTPUT_NAME) set (CMD_ARGS "-Dhdf.hdf5lib.H5.loadLibraryName=${target_name}$<$<CONFIG:Debug>:${CMAKE_DEBUG_POSTFIX}>;") diff --git a/java/examples/datatypes/CMakeLists.txt b/java/examples/datatypes/CMakeLists.txt index b83da0e..f32f645 100644 --- a/java/examples/datatypes/CMakeLists.txt +++ b/java/examples/datatypes/CMakeLists.txt @@ -56,7 +56,7 @@ foreach (HDFJAVA_JAR ${CMAKE_JAVA_INCLUDE_PATH}) set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${HDFJAVA_JAR}") endforeach () -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL) get_property (target_name TARGET ${HDF5_JAVA_JNI_LIB_TARGET} PROPERTY OUTPUT_NAME) set (CMD_ARGS "-Dhdf.hdf5lib.H5.loadLibraryName=${target_name}$<$<CONFIG:Debug>:${CMAKE_DEBUG_POSTFIX}>;") diff --git a/java/examples/datatypes/H5Ex_T_Float.java b/java/examples/datatypes/H5Ex_T_Float.java index f677479..f15f774 100644 --- a/java/examples/datatypes/H5Ex_T_Float.java +++ b/java/examples/datatypes/H5Ex_T_Float.java @@ -22,6 +22,8 @@ package examples.datatypes; import java.text.DecimalFormat; +import java.text.DecimalFormatSymbols; +import java.util.Locale; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; @@ -173,7 +175,7 @@ public class H5Ex_T_Float { } // Output the data to the screen. - DecimalFormat df = new DecimalFormat("#,##0.0000"); + DecimalFormat df = new DecimalFormat("#,##0.0000", new DecimalFormatSymbols(Locale.US)); System.out.println(DATASETNAME + ":"); for (int indx = 0; indx < dims[0]; indx++) { System.out.print(" ["); diff --git a/java/examples/datatypes/H5Ex_T_FloatAttribute.java b/java/examples/datatypes/H5Ex_T_FloatAttribute.java index 2e706d9..12831bc 100644 --- a/java/examples/datatypes/H5Ex_T_FloatAttribute.java +++ b/java/examples/datatypes/H5Ex_T_FloatAttribute.java @@ -22,6 +22,8 @@ package examples.datatypes; import java.text.DecimalFormat; +import java.text.DecimalFormatSymbols; +import java.util.Locale; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; @@ -201,7 +203,7 @@ public class H5Ex_T_FloatAttribute { } // Output the data to the screen. - DecimalFormat df = new DecimalFormat("#,##0.0000"); + DecimalFormat df = new DecimalFormat("#,##0.0000", new DecimalFormatSymbols(Locale.US)); System.out.println(ATTRIBUTENAME + ":"); for (int indx = 0; indx < dims[0]; indx++) { System.out.print(" ["); diff --git a/java/examples/groups/CMakeLists.txt b/java/examples/groups/CMakeLists.txt index 9e43087..e319a7f 100644 --- a/java/examples/groups/CMakeLists.txt +++ b/java/examples/groups/CMakeLists.txt @@ -55,7 +55,7 @@ foreach (h5_file ${HDF_JAVA_TEST_FILES}) endforeach () add_custom_target(H5Ex_G_Visit_files ALL COMMENT "Copying files needed by H5Ex_G_Visit tests" DEPENDS ${H5Ex_G_Visit_files_list}) -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL) get_property (target_name TARGET ${HDF5_JAVA_JNI_LIB_TARGET} PROPERTY OUTPUT_NAME) set (CMD_ARGS "-Dhdf.hdf5lib.H5.loadLibraryName=${target_name}$<$<CONFIG:Debug>:${CMAKE_DEBUG_POSTFIX}>;") diff --git a/java/examples/groups/H5Ex_G_Intermediate.java b/java/examples/groups/H5Ex_G_Intermediate.java index f7d5a50..e97e5f8 100644 --- a/java/examples/groups/H5Ex_G_Intermediate.java +++ b/java/examples/groups/H5Ex_G_Intermediate.java @@ -19,8 +19,8 @@ package examples.groups; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5O_iterate_cb; import hdf.hdf5lib.callbacks.H5O_iterate_t; +import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t; import hdf.hdf5lib.structs.H5O_info_t; import java.util.ArrayList; @@ -53,9 +53,9 @@ public class H5Ex_G_Intermediate { // Print all the objects in the file_ids to show that intermediate group_ids have been created. System.out.println("Objects in the file_id:"); - // H5O_iterate_t iter_data = null; - H5O_iterate_t iter_data = new H5O_iter_data(); - H5O_iterate_cb iter_cb = new H5O_iter_callback(); + // H5O_iterate_opdata_t iter_data = null; + H5O_iterate_opdata_t iter_data = new H5O_iter_data(); + H5O_iterate_t iter_cb = new H5O_iter_callback(); H5.H5Ovisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb, iter_data); } @@ -92,12 +92,12 @@ public class H5Ex_G_Intermediate { } } - private class H5O_iter_data implements H5O_iterate_t { + private class H5O_iter_data implements H5O_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - private class H5O_iter_callback implements H5O_iterate_cb { - public int callback(long group, String name, H5O_info_t info, H5O_iterate_t op_data) { + private class H5O_iter_callback implements H5O_iterate_t { + public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5O_iter_data) op_data).iterdata.add(id); diff --git a/java/examples/groups/H5Ex_G_Iterate.java b/java/examples/groups/H5Ex_G_Iterate.java index 3c9ca82..5acbf65 100644 --- a/java/examples/groups/H5Ex_G_Iterate.java +++ b/java/examples/groups/H5Ex_G_Iterate.java @@ -19,6 +19,7 @@ package examples.groups; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; +import hdf.hdf5lib.structs.H5O_token_t; import java.util.EnumSet; import java.util.HashMap; @@ -75,8 +76,8 @@ public class H5Ex_G_Iterate { String[] oname = new String[count]; int[] otype = new int[count]; int[] ltype = new int[count]; - long[] orefs = new long[count]; - H5.H5Gget_obj_info_all(file_id, DATASETNAME, oname, otype, ltype, orefs, HDF5Constants.H5_INDEX_NAME); + H5O_token_t[] otokens = new H5O_token_t[count]; + H5.H5Gget_obj_info_all(file_id, DATASETNAME, oname, otype, ltype, otokens, HDF5Constants.H5_INDEX_NAME); // Get type of the object and display its name and type. for (int indx = 0; indx < otype.length; indx++) { diff --git a/java/examples/groups/H5Ex_G_Traverse.java b/java/examples/groups/H5Ex_G_Traverse.java index 2a2cba3..6225a9e 100644 --- a/java/examples/groups/H5Ex_G_Traverse.java +++ b/java/examples/groups/H5Ex_G_Traverse.java @@ -25,22 +25,22 @@ package examples.groups; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5L_iterate_cb; import hdf.hdf5lib.callbacks.H5L_iterate_t; +import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t; import hdf.hdf5lib.structs.H5L_info_t; import hdf.hdf5lib.structs.H5O_info_t; import examples.groups.H5Ex_G_Iterate.H5O_type; -class opdata implements H5L_iterate_t { +class opdata implements H5L_iterate_opdata_t { int recurs; opdata prev; - long addr; + H5O_token_t obj_token; } public class H5Ex_G_Traverse { private static String FILE = "h5ex_g_traverse.h5"; - public static H5L_iterate_cb iter_cb = new H5L_iter_callbackT(); + public static H5L_iterate_t iter_cb = new H5L_iter_callbackT(); private static void OpenGroup() { long file_id = -1; @@ -54,7 +54,7 @@ public class H5Ex_G_Traverse { infobuf = H5.H5Oget_info(file_id); od.recurs = 0; od.prev = null; - od.addr = infobuf.addr; + od.obj_token = infobuf.token; } } catch (Exception e) { @@ -64,7 +64,7 @@ public class H5Ex_G_Traverse { // Print the root group and formatting, begin iteration. try { System.out.println("/ {"); - // H5L_iterate_cb iter_cb = new H5L_iter_callbackT(); + // H5L_iterate_t iter_cb = new H5L_iter_callbackT(); H5.H5Literate(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, 0L, iter_cb, od); System.out.println("}"); } @@ -87,8 +87,8 @@ public class H5Ex_G_Traverse { } } -class H5L_iter_callbackT implements H5L_iterate_cb { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data) { +class H5L_iter_callbackT implements H5L_iterate_t { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { H5O_info_t infobuf; int return_val = 0; @@ -105,7 +105,7 @@ class H5L_iter_callbackT implements H5L_iterate_cb { switch (H5O_type.get(infobuf.type)) { case H5O_TYPE_GROUP: System.out.println("Group: " + name + " { "); - // Check group address against linked list of operator + // Check group object token against linked list of operator // data structures. We will always run the check, as the // reference count cannot be relied upon if there are // symbolic links, and H5Oget_info_by_name always follows @@ -114,7 +114,7 @@ class H5L_iter_callbackT implements H5L_iterate_cb { // links, however it could still fail if an object's // reference count was manually manipulated with // H5Odecr_refcount. - if (group_check(od, infobuf.addr)) { + if (group_check(od, infobuf.token)) { for (int i = 0; i < spaces; i++) System.out.print(" "); System.out.println(" Warning: Loop detected!"); @@ -127,8 +127,8 @@ class H5L_iter_callbackT implements H5L_iterate_cb { opdata nextod = new opdata(); nextod.recurs = od.recurs + 1; nextod.prev = od; - nextod.addr = infobuf.addr; - H5L_iterate_cb iter_cb2 = new H5L_iter_callbackT(); + nextod.obj_token = infobuf.token; + H5L_iterate_t iter_cb2 = new H5L_iter_callbackT(); return_val = H5.H5Literate_by_name(group, name, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, 0L, iter_cb2, nextod, HDF5Constants.H5P_DEFAULT); } @@ -153,13 +153,13 @@ class H5L_iter_callbackT implements H5L_iterate_cb { return return_val; } - public boolean group_check(opdata od, long target_addr) { - if (od.addr == target_addr) - return true; // Addresses match + public boolean group_check(opdata od, H5O_token_t target_token) { + if (od.obj_token.equals(target_token)) + return true; // Object tokens match else if (od.recurs == 0) return false; // Root group reached with no matches else - return group_check(od.prev, target_addr); // Recursively examine the next node + return group_check(od.prev, target_token); // Recursively examine the next node } } diff --git a/java/examples/groups/H5Ex_G_Visit.java b/java/examples/groups/H5Ex_G_Visit.java index f91c707..4255316 100644 --- a/java/examples/groups/H5Ex_G_Visit.java +++ b/java/examples/groups/H5Ex_G_Visit.java @@ -23,10 +23,10 @@ package examples.groups; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5L_iterate_cb; import hdf.hdf5lib.callbacks.H5L_iterate_t; -import hdf.hdf5lib.callbacks.H5O_iterate_cb; +import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t; import hdf.hdf5lib.callbacks.H5O_iterate_t; +import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t; import hdf.hdf5lib.structs.H5L_info_t; import hdf.hdf5lib.structs.H5O_info_t; @@ -55,13 +55,13 @@ public class H5Ex_G_Visit { // Begin iteration using H5Ovisit System.out.println("Objects in the file:"); - H5O_iterate_t iter_data = new H5O_iter_data(); - H5O_iterate_cb iter_cb = new H5O_iter_callback(); + H5O_iterate_opdata_t iter_data = new H5O_iter_data(); + H5O_iterate_t iter_cb = new H5O_iter_callback(); H5.H5Ovisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb, iter_data); System.out.println(); // Repeat the same process using H5Lvisit - H5L_iterate_t iter_data2 = new H5L_iter_data(); - H5L_iterate_cb iter_cb2 = new H5L_iter_callback(); + H5L_iterate_opdata_t iter_data2 = new H5L_iter_data(); + H5L_iterate_t iter_cb2 = new H5L_iter_callback(); System.out.println("Links in the file:"); H5.H5Lvisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb2, iter_data2); @@ -91,12 +91,12 @@ public class H5Ex_G_Visit { } } - private class H5L_iter_data implements H5L_iterate_t { + private class H5L_iter_data implements H5L_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - private class H5L_iter_callback implements H5L_iterate_cb { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data) { + private class H5L_iter_callback implements H5L_iterate_t { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data) op_data).iterdata.add(id); @@ -107,8 +107,8 @@ public class H5Ex_G_Visit { // Get type of the object and display its name and type. The name of the object is passed to this // function by the Library. infobuf = H5.H5Oget_info_by_name(group, name, HDF5Constants.H5P_DEFAULT); - H5O_iterate_cb iter_cbO = new H5O_iter_callback(); - H5O_iterate_t iter_dataO = new H5O_iter_data(); + H5O_iterate_t iter_cbO = new H5O_iter_callback(); + H5O_iterate_opdata_t iter_dataO = new H5O_iter_data(); ret = iter_cbO.callback(group, name, infobuf, iter_dataO); } catch (Exception e) { @@ -119,12 +119,12 @@ public class H5Ex_G_Visit { } } - private class H5O_iter_data implements H5O_iterate_t { + private class H5O_iter_data implements H5O_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - private class H5O_iter_callback implements H5O_iterate_cb { - public int callback(long group, String name, H5O_info_t info, H5O_iterate_t op_data) { + private class H5O_iter_callback implements H5O_iterate_t { + public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5O_iter_data) op_data).iterdata.add(id); diff --git a/java/examples/intro/CMakeLists.txt b/java/examples/intro/CMakeLists.txt index b56e3ad..a1ccd6b 100644 --- a/java/examples/intro/CMakeLists.txt +++ b/java/examples/intro/CMakeLists.txt @@ -45,7 +45,7 @@ foreach (HDFJAVA_JAR ${CMAKE_JAVA_INCLUDE_PATH}) set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${HDFJAVA_JAR}") endforeach () -if (BUILD_TESTING) +if (BUILD_TESTING AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL) get_property (target_name TARGET ${HDF5_JAVA_JNI_LIB_TARGET} PROPERTY OUTPUT_NAME) set (CMD_ARGS "-Dhdf.hdf5lib.H5.loadLibraryName=${target_name}$<$<CONFIG:Debug>:${CMAKE_DEBUG_POSTFIX}>;") diff --git a/java/src/Makefile.am b/java/src/Makefile.am index fcdeae9..b7ad4bd 100644 --- a/java/src/Makefile.am +++ b/java/src/Makefile.am @@ -51,10 +51,10 @@ hdf5_java_JAVA = \ ${pkgpath}/callbacks/H5D_iterate_t.java \ ${pkgpath}/callbacks/H5E_walk_cb.java \ ${pkgpath}/callbacks/H5E_walk_t.java \ - ${pkgpath}/callbacks/H5L_iterate_cb.java \ ${pkgpath}/callbacks/H5L_iterate_t.java \ - ${pkgpath}/callbacks/H5O_iterate_cb.java \ + ${pkgpath}/callbacks/H5L_iterate_opdata_t.java \ ${pkgpath}/callbacks/H5O_iterate_t.java \ + ${pkgpath}/callbacks/H5O_iterate_opdata_t.java \ ${pkgpath}/callbacks/H5P_cls_close_func_cb.java \ ${pkgpath}/callbacks/H5P_cls_close_func_t.java \ ${pkgpath}/callbacks/H5P_cls_copy_func_cb.java \ @@ -103,6 +103,8 @@ hdf5_java_JAVA = \ ${pkgpath}/structs/H5G_info_t.java \ ${pkgpath}/structs/H5L_info_t.java \ ${pkgpath}/structs/H5O_info_t.java \ + ${pkgpath}/structs/H5O_native_info_t.java \ + ${pkgpath}/structs/H5O_token_t.java \ ${pkgpath}/structs/H5O_hdr_info_t.java \ ${pkgpath}/structs/H5AC_cache_config_t.java \ ${pkgpath}/H5.java \ diff --git a/java/src/hdf/hdf5lib/CMakeLists.txt b/java/src/hdf/hdf5lib/CMakeLists.txt index be8f60a..b0293fb 100644 --- a/java/src/hdf/hdf5lib/CMakeLists.txt +++ b/java/src/hdf/hdf5lib/CMakeLists.txt @@ -18,10 +18,10 @@ set (HDF5_JAVA_HDF_HDF5_CALLBACKS_SOURCES callbacks/H5D_iterate_t.java callbacks/H5E_walk_cb.java callbacks/H5E_walk_t.java - callbacks/H5L_iterate_cb.java callbacks/H5L_iterate_t.java - callbacks/H5O_iterate_cb.java + callbacks/H5L_iterate_opdata_t.java callbacks/H5O_iterate_t.java + callbacks/H5O_iterate_opdata_t.java callbacks/H5P_cls_close_func_cb.java callbacks/H5P_cls_close_func_t.java callbacks/H5P_cls_copy_func_cb.java @@ -79,6 +79,8 @@ set (HDF5_JAVA_HDF_HDF5_STRUCTS_SOURCES structs/H5L_info_t.java structs/H5O_hdr_info_t.java structs/H5O_info_t.java + structs/H5O_native_info_t.java + structs/H5O_token_t.java ) set (HDF5_JAVA_HDF_HDF5_SOURCES diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java index ba10f5e..5b704dd 100644 --- a/java/src/hdf/hdf5lib/H5.java +++ b/java/src/hdf/hdf5lib/H5.java @@ -24,10 +24,10 @@ import hdf.hdf5lib.callbacks.H5D_iterate_cb; import hdf.hdf5lib.callbacks.H5D_iterate_t; import hdf.hdf5lib.callbacks.H5E_walk_cb; import hdf.hdf5lib.callbacks.H5E_walk_t; -import hdf.hdf5lib.callbacks.H5L_iterate_cb; import hdf.hdf5lib.callbacks.H5L_iterate_t; -import hdf.hdf5lib.callbacks.H5O_iterate_cb; +import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t; import hdf.hdf5lib.callbacks.H5O_iterate_t; +import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t; import hdf.hdf5lib.callbacks.H5P_cls_close_func_cb; import hdf.hdf5lib.callbacks.H5P_cls_close_func_t; import hdf.hdf5lib.callbacks.H5P_cls_copy_func_cb; @@ -55,6 +55,8 @@ import hdf.hdf5lib.structs.H5FD_ros3_fapl_t; import hdf.hdf5lib.structs.H5G_info_t; import hdf.hdf5lib.structs.H5L_info_t; import hdf.hdf5lib.structs.H5O_info_t; +import hdf.hdf5lib.structs.H5O_native_info_t; +import hdf.hdf5lib.structs.H5O_token_t; /** * This class is the Java interface for the HDF5 library. @@ -3577,8 +3579,8 @@ public class H5 implements java.io.Serializable { * OUT: Names of all objects under the group, name. * @param objTypes * OUT: Types of all objects under the group, name. - * @param objRef - * OUT: Reference number of all objects under the group, name. + * @param tokens + * OUT: Object token of all objects under the group, name. * * @return the number of items found * @@ -3588,26 +3590,26 @@ public class H5 implements java.io.Serializable { * - name is null. */ public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes, - long[] objRef) throws HDF5LibraryException, NullPointerException { + H5O_token_t[] tokens) throws HDF5LibraryException, NullPointerException { if (objNames == null) { throw new NullPointerException("H5Gget_obj_info_all(): name array is null"); } - return H5Gget_obj_info_all(loc_id, name, objNames, objTypes, null, null, objRef, HDF5Constants.H5_INDEX_NAME); + return H5Gget_obj_info_all(loc_id, name, objNames, objTypes, null, null, tokens, HDF5Constants.H5_INDEX_NAME); } public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype, - int[] ltype, long[] ref, int indx_type) throws HDF5LibraryException, NullPointerException { - return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, null, ref, indx_type, -1); + int[] ltype, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException { + return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, null, tokens, indx_type, -1); } public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype, - int[] ltype, long[] fno, long[] ref, int indx_type) throws HDF5LibraryException, NullPointerException { - return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, ref, oname.length, indx_type, -1); + int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException { + return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, tokens, oname.length, indx_type, -1); } public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype, - int[] ltype, long[] fno, long[] ref, int indx_type, int indx_order) throws HDF5LibraryException, + int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type, int indx_order) throws HDF5LibraryException, NullPointerException { if (oname == null) { throw new NullPointerException("H5Gget_obj_info_full(): name array is null"); @@ -3629,7 +3631,7 @@ public class H5 implements java.io.Serializable { ltype = new int[otype.length]; if (fno == null) - fno = new long[ref.length]; + fno = new long[tokens.length]; if (indx_type < 0) indx_type = HDF5Constants.H5_INDEX_NAME; @@ -3638,7 +3640,7 @@ public class H5 implements java.io.Serializable { indx_order = HDF5Constants.H5_ITER_INC; log.trace("H5Gget_obj_info_full: oname_len={}", oname.length); - int status = H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, ref, oname.length, indx_type, + int status = H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, tokens, oname.length, indx_type, indx_order); for (int indx = 0; indx < oname.length; indx++) log.trace("H5Gget_obj_info_full: oname={}", oname[indx]); @@ -3646,7 +3648,7 @@ public class H5 implements java.io.Serializable { } private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype, - int[] ltype, long[] fno, long[] ref, int n, int indx_type, int indx_order) throws HDF5LibraryException, + int[] ltype, long[] fno, H5O_token_t[] tokens, int n, int indx_type, int indx_order) throws HDF5LibraryException, NullPointerException; /** @@ -3701,8 +3703,8 @@ public class H5 implements java.io.Serializable { * OUT: Types of all objects under the group, name. * @param lnkTypes * OUT: Types of all links under the group, name. - * @param objRef - * OUT: Reference number of all objects under the group, name. + * @param objToken + * OUT: Object token of all objects under the group, name. * @param objMax * IN: Maximum number of all objects under the group, name. * @@ -3714,7 +3716,7 @@ public class H5 implements java.io.Serializable { * - name is null. */ public synchronized static int H5Gget_obj_info_max(long loc_id, String[] objNames, int[] objTypes, int[] lnkTypes, - long[] objRef, long objMax) throws HDF5LibraryException, NullPointerException { + H5O_token_t[] objToken, long objMax) throws HDF5LibraryException, NullPointerException { if (objNames == null) { throw new NullPointerException("H5Gget_obj_info_max(): name array is null"); } @@ -3739,11 +3741,11 @@ public class H5 implements java.io.Serializable { throw new HDF5LibraryException("H5Gget_obj_info_max(): name and type array sizes are different"); } - return H5Gget_obj_info_max(loc_id, objNames, objTypes, lnkTypes, objRef, objMax, objNames.length); + return H5Gget_obj_info_max(loc_id, objNames, objTypes, lnkTypes, objToken, objMax, objNames.length); } private synchronized static native int H5Gget_obj_info_max(long loc_id, String[] oname, int[] otype, int[] ltype, - long[] ref, long amax, int n) throws HDF5LibraryException, NullPointerException; + H5O_token_t[] tokens, long amax, int n) throws HDF5LibraryException, NullPointerException; /** * H5Gn_members report the number of objects in a Group. The 'objects' include everything that will be visited by @@ -4340,8 +4342,8 @@ public class H5 implements java.io.Serializable { * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native int H5Literate(long grp_id, int idx_type, int order, long idx, H5L_iterate_cb op, - H5L_iterate_t op_data) throws HDF5LibraryException; + public synchronized static native int H5Literate(long grp_id, int idx_type, int order, long idx, H5L_iterate_t op, + H5L_iterate_opdata_t op_data) throws HDF5LibraryException; /** * H5Literate_by_name iterates through links in a group. @@ -4372,7 +4374,7 @@ public class H5 implements java.io.Serializable { * - group_name is null. **/ public synchronized static native int H5Literate_by_name(long grp_id, String group_name, int idx_type, int order, - long idx, H5L_iterate_cb op, H5L_iterate_t op_data, long lapl_id) throws HDF5LibraryException, + long idx, H5L_iterate_t op, H5L_iterate_opdata_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -4419,8 +4421,8 @@ public class H5 implements java.io.Serializable { * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native int H5Lvisit(long grp_id, int idx_type, int order, H5L_iterate_cb op, - H5L_iterate_t op_data) throws HDF5LibraryException; + public synchronized static native int H5Lvisit(long grp_id, int idx_type, int order, H5L_iterate_t op, + H5L_iterate_opdata_t op_data) throws HDF5LibraryException; /** * H5Lvisit_by_name recursively visits all links starting from a specified group. @@ -4449,7 +4451,7 @@ public class H5 implements java.io.Serializable { * - group_name is null. **/ public synchronized static native int H5Lvisit_by_name(long loc_id, String group_name, int idx_type, int order, - H5L_iterate_cb op, H5L_iterate_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException; + H5L_iterate_t op, H5L_iterate_opdata_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -4666,6 +4668,52 @@ public class H5 implements java.io.Serializable { NullPointerException; /** + * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name. + * + * @param loc_id + * IN: File or group identifier specifying location of group in which object is located + * @param name + * IN: Relative name of group + * @param lapl_id + * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as + * H5P_DEFAULT.) + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public static H5O_info_t H5Oget_info_by_name(long loc_id, String name, long lapl_id) + throws HDF5LibraryException, NullPointerException { + return H5Oget_info_by_name(loc_id, name, HDF5Constants.H5O_INFO_ALL, lapl_id); + } + + /** + * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name. + * + * @param loc_id + * IN: File or group identifier specifying location of group in which object is located + * @param name + * IN: Relative name of group + * @param fields + * IN: Object fields to select + * @param lapl_id + * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as + * H5P_DEFAULT.) + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public synchronized static native H5O_info_t H5Oget_info_by_name(long loc_id, String name, int fields, long lapl_id) + throws HDF5LibraryException, NullPointerException; + + /** * H5Oget_info_by_idx retrieves the metadata for an object, identifying the object by an index position. * * @param loc_id @@ -4724,7 +4772,47 @@ public class H5 implements java.io.Serializable { int order, long n, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; /** - * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name. + * H5Oget_native_info retrieves the native HDF5-specific metadata for an HDF5 object specified by an identifier. + * Native HDF5-specific metadata includes things like object header information and object storage layout information. + * + * @param loc_id + * IN: Identifier for target object + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public static H5O_native_info_t H5Oget_native_info(long loc_id) throws HDF5LibraryException, + NullPointerException { + return H5Oget_native_info(loc_id, HDF5Constants.H5O_NATIVE_INFO_ALL); + } + + /** + * H5Oget_native_info retrieves the native HDF5-specific metadata for an HDF5 object specified by an identifier. + * Native HDF5-specific metadata includes things like object header information and object storage layout information. + * + * @param loc_id + * IN: Identifier for target object + * @param fields + * IN: Object fields to select + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public synchronized static native H5O_native_info_t H5Oget_native_info(long loc_id, int fields) throws HDF5LibraryException, + NullPointerException; + + /** + * H5Oget_native_info_by_name retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object + * by location and relative name. Native HDF5-specific metadata includes things like object header information and + * object storage layout information. * * @param loc_id * IN: File or group identifier specifying location of group in which object is located @@ -4741,13 +4829,15 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ - public static H5O_info_t H5Oget_info_by_name(long loc_id, String name, long lapl_id) + public static H5O_native_info_t H5Oget_native_info_by_name(long loc_id, String name, long lapl_id) throws HDF5LibraryException, NullPointerException { - return H5Oget_info_by_name(loc_id, name, HDF5Constants.H5O_INFO_ALL, lapl_id); + return H5Oget_native_info_by_name(loc_id, name, HDF5Constants.H5O_NATIVE_INFO_ALL, lapl_id); } /** - * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name. + * H5Oget_native_info_by_name retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object + * by location and relative name. Native HDF5-specific metadata includes things like object header information and + * object storage layout information. * * @param loc_id * IN: File or group identifier specifying location of group in which object is located @@ -4766,10 +4856,72 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ - public synchronized static native H5O_info_t H5Oget_info_by_name(long loc_id, String name, int fields, long lapl_id) + public synchronized static native H5O_native_info_t H5Oget_native_info_by_name(long loc_id, String name, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; /** + * H5Oget_native_info_by_idx retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object + * by an index position. Native HDF5-specific metadata includes things like object header information and + * object storage layout information. + * + * @param loc_id + * IN: File or group identifier + * @param group_name + * IN: Name of group, relative to loc_id, in which object is located + * @param idx_type + * IN: Type of index by which objects are ordered + * @param order + * IN: Order of iteration within index + * @param n + * IN: Object to open + * @param lapl_id + * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as + * H5P_DEFAULT.) + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public static H5O_native_info_t H5Oget_native_info_by_idx(long loc_id, String group_name, int idx_type, + int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException { + return H5Oget_native_info_by_idx(loc_id, group_name, idx_type, order, n, HDF5Constants.H5O_NATIVE_INFO_ALL, lapl_id); + } + + /** + * H5Oget_native_info_by_idx retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object + * by an index position. Native HDF5-specific metadata includes things like object header information and + * object storage layout information. + * + * @param loc_id + * IN: File or group identifier + * @param group_name + * IN: Name of group, relative to loc_id, in which object is located + * @param idx_type + * IN: Type of index by which objects are ordered + * @param order + * IN: Order of iteration within index + * @param n + * IN: Object to open + * @param fields + * IN: Object fields to select + * @param lapl_id + * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as + * H5P_DEFAULT.) + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public synchronized static native H5O_native_info_t H5Oget_native_info_by_idx(long loc_id, String group_name, int idx_type, + int order, long n, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; + + /** * H5Olink creates a new hard link to an object in an HDF5 file. * * @param obj_id @@ -4843,7 +4995,7 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ - public static int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_cb op, H5O_iterate_t op_data) + public static int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_t op, H5O_iterate_opdata_t op_data) throws HDF5LibraryException, NullPointerException { return H5Ovisit(obj_id, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL); } @@ -4872,8 +5024,8 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ - public synchronized static native int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_cb op, - H5O_iterate_t op_data, int fields) throws HDF5LibraryException, NullPointerException; + public synchronized static native int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_t op, + H5O_iterate_opdata_t op_data, int fields) throws HDF5LibraryException, NullPointerException; /** * H5Ovisit_by_name recursively visits all objects starting from a specified object. @@ -4902,7 +5054,7 @@ public class H5 implements java.io.Serializable { * - name is null. **/ public static int H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order, - H5O_iterate_cb op, H5O_iterate_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException { + H5O_iterate_t op, H5O_iterate_opdata_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException { return H5Ovisit_by_name(loc_id, obj_name, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL, lapl_id); } @@ -4935,7 +5087,7 @@ public class H5 implements java.io.Serializable { * - name is null. **/ public synchronized static native int H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order, - H5O_iterate_cb op, H5O_iterate_t op_data, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; + H5O_iterate_t op, H5O_iterate_opdata_t op_data, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -4977,26 +5129,28 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Oincr_refcount(long object_id) throws HDF5LibraryException; /** - * H5Oopen_by_addr opens a group, dataset, or named datatype using its address within an HDF5 file. + * H5Oopen_by_token opens a group, dataset, or named datatype using its object token within an HDF5 file. * * @param loc_id IN: File or group identifier - * @param addr IN: Object's address in the file + * @param token IN: Object's token in the file * * @return an object identifier for the opened object * * @exception HDF5LibraryException - Error from the HDF-5 Library. **/ - public static long H5Oopen_by_addr(long loc_id, long addr) throws HDF5LibraryException { - long id = _H5Oopen_by_addr(loc_id, addr); + public static long H5Oopen_by_token(long loc_id, H5O_token_t token) throws HDF5LibraryException { + long id = _H5Oopen_by_token(loc_id, token); + if (id > 0) { - log.trace("OPEN_IDS: H5Oopen_by_addr add {}", id); + log.trace("OPEN_IDS: H5Oopen_by_token add {}", id); OPEN_IDS.add(id); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } + return id; } - private synchronized static native long _H5Oopen_by_addr(long loc_id, long addr) + private synchronized static native long _H5Oopen_by_token(long loc_id, H5O_token_t token) throws HDF5LibraryException, NullPointerException; /** @@ -5060,6 +5214,12 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Oenable_mdc_flushes(long object_id); public synchronized static native boolean H5Oare_mdc_flushes_disabled(long object_id); + // /////// unimplemented //////// + // herr_t H5Otoken_cmp(hid_t loc_id, const H5O_token_t *token1, const H5O_token_t *token2, + // int *cmp_value); + // herr_t H5Otoken_to_str(hid_t loc_id, const H5O_token_t *token, char **token_str); + // herr_t H5Otoken_from_str(hid_t loc_id, const char *token_str, H5O_token_t *token); + // //////////////////////////////////////////////////////////// // // // H5P: Property List Interface Functions // @@ -10736,7 +10896,8 @@ public class H5 implements java.io.Serializable { public synchronized static native long H5VLregister_connector_by_name(String connector_name, long vipl_id); public synchronized static native long H5VLregister_connector_by_value(int connector_value, long vipl_id); public synchronized static native boolean H5VLis_connector_registered(String name); - public synchronized static native long H5VLget_connector_id(String name); + public synchronized static native long H5VLget_connector_id(long object_id); + public synchronized static native long H5VLget_connector_id_by_name(String name); public synchronized static native String H5VLget_connector_name(long object_id); public synchronized static native void H5VLclose(long connector_id); public synchronized static native void H5VLunregister_connector(long connector_id); diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java index 4aeeb98..beba1d1 100644 --- a/java/src/hdf/hdf5lib/HDF5Constants.java +++ b/java/src/hdf/hdf5lib/HDF5Constants.java @@ -14,6 +14,8 @@ package hdf.hdf5lib; +import hdf.hdf5lib.structs.H5O_token_t; + /** * /** This class contains C constants and enumerated types of HDF5 library. The * values of these constants are obtained from the library by calling J2C(int @@ -344,9 +346,10 @@ public class HDF5Constants { public static final int H5O_INFO_BASIC = H5O_INFO_BASIC(); public static final int H5O_INFO_TIME = H5O_INFO_TIME(); public static final int H5O_INFO_NUM_ATTRS = H5O_INFO_NUM_ATTRS(); - public static final int H5O_INFO_HDR = H5O_INFO_HDR(); - public static final int H5O_INFO_META_SIZE = H5O_INFO_META_SIZE(); public static final int H5O_INFO_ALL = H5O_INFO_ALL(); + public static final int H5O_NATIVE_INFO_HDR = H5O_NATIVE_INFO_HDR(); + public static final int H5O_NATIVE_INFO_META_SIZE = H5O_NATIVE_INFO_META_SIZE(); + public static final int H5O_NATIVE_INFO_ALL = H5O_NATIVE_INFO_ALL(); public static final int H5O_SHMESG_NONE_FLAG = H5O_SHMESG_NONE_FLAG(); public static final int H5O_SHMESG_SDSPACE_FLAG = H5O_SHMESG_SDSPACE_FLAG(); public static final int H5O_SHMESG_DTYPE_FLAG = H5O_SHMESG_DTYPE_FLAG(); @@ -359,6 +362,8 @@ public class HDF5Constants { public static final int H5O_TYPE_DATASET = H5O_TYPE_DATASET(); public static final int H5O_TYPE_NAMED_DATATYPE = H5O_TYPE_NAMED_DATATYPE(); public static final int H5O_TYPE_NTYPES = H5O_TYPE_NTYPES(); + public static final int H5O_MAX_TOKEN_SIZE = H5O_MAX_TOKEN_SIZE(); + public static final H5O_token_t H5O_TOKEN_UNDEF = H5O_TOKEN_UNDEF(); public static final long H5P_ROOT = H5P_ROOT(); public static final long H5P_OBJECT_CREATE = H5P_OBJECT_CREATE(); @@ -1308,11 +1313,13 @@ public class HDF5Constants { private static native final int H5O_INFO_NUM_ATTRS(); - private static native final int H5O_INFO_HDR(); + private static native final int H5O_INFO_ALL(); - private static native final int H5O_INFO_META_SIZE(); + private static native final int H5O_NATIVE_INFO_HDR(); - private static native final int H5O_INFO_ALL(); + private static native final int H5O_NATIVE_INFO_META_SIZE(); + + private static native final int H5O_NATIVE_INFO_ALL(); private static native final int H5O_SHMESG_NONE_FLAG(); @@ -1338,6 +1345,10 @@ public class HDF5Constants { private static native final int H5O_TYPE_NTYPES(); + private static native final int H5O_MAX_TOKEN_SIZE(); + + private static native final H5O_token_t H5O_TOKEN_UNDEF(); + private static native final long H5P_ROOT(); private static native final long H5P_OBJECT_CREATE(); diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java index ec71911..ad9ad8c 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java @@ -13,9 +13,6 @@ package hdf.hdf5lib.callbacks; -import hdf.hdf5lib.structs.H5L_info_t; +public interface H5L_iterate_opdata_t { -//Information class for link callback(for H5Lvisit/H5Lvisit_by_name) -public interface H5L_iterate_cb extends Callbacks { - int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java index 28ffb8a..f92fbc4 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java @@ -13,8 +13,9 @@ package hdf.hdf5lib.callbacks; -public interface H5L_iterate_t { -/** public ArrayList iterdata = new ArrayList(); - * Any derived interfaces must define the single public variable as above. - */ +import hdf.hdf5lib.structs.H5L_info_t; + +// Information class for link callback (for H5Lvisit/H5Lvisit_by_name). +public interface H5L_iterate_t extends Callbacks { + int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java index 89cf206..e1c47b5 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java @@ -13,9 +13,6 @@ package hdf.hdf5lib.callbacks; -import hdf.hdf5lib.structs.H5O_info_t; +public interface H5O_iterate_opdata_t { -//Information class for link callback(for H5Ovisit/H5Ovisit_by_name) -public interface H5O_iterate_cb extends Callbacks { - int callback(long group, String name, H5O_info_t info, H5O_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java index 1491b09..9a55106 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java @@ -13,8 +13,9 @@ package hdf.hdf5lib.callbacks; -public interface H5O_iterate_t { -/** public ArrayList iterdata = new ArrayList(); - * Any derived interfaces must define the single public variable as above. - */ +import hdf.hdf5lib.structs.H5O_info_t; + +// Information class for link callback(for H5Ovisit/H5Ovisit_by_name) +public interface H5O_iterate_t extends Callbacks { + int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data); } diff --git a/java/src/hdf/hdf5lib/structs/H5L_info_t.java b/java/src/hdf/hdf5lib/structs/H5L_info_t.java index 3bbb189..377e617 100644 --- a/java/src/hdf/hdf5lib/structs/H5L_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5L_info_t.java @@ -15,22 +15,39 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for link (for H5Lget_info/H5Lget_info_by_idx) -public class H5L_info_t implements Serializable{ +import hdf.hdf5lib.HDF5Constants; + +// Information struct for link (for H5Lget_info/H5Lget_info_by_idx) +public class H5L_info_t implements Serializable { private static final long serialVersionUID = -4754320605310155033L; - public int type; - public boolean corder_valid; - public long corder; - public int cset; - public long address_val_size; + public int type; + public boolean corder_valid; + public long corder; + public int cset; + public H5O_token_t token; + public long val_size; + + // Constructor for using object token portion of C union + H5L_info_t (int type, boolean corder_valid, long corder, + int cset, H5O_token_t token) + { + this.type = type; + this.corder_valid = corder_valid; + this.corder = corder; + this.cset = cset; + this.token = token; + this.val_size = -1; + } + // Constructor for using val_size portion of C union H5L_info_t (int type, boolean corder_valid, long corder, - int cset, long address_val_size) + int cset, long val_size) { this.type = type; this.corder_valid = corder_valid; this.corder = corder; this.cset = cset; - this.address_val_size = address_val_size; + this.token = HDF5Constants.H5O_TOKEN_UNDEF; + this.val_size = val_size; } } diff --git a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java index a39c1ed..8d0cc24 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java @@ -16,7 +16,7 @@ package hdf.hdf5lib.structs; import java.io.Serializable; // Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) -public class H5O_hdr_info_t implements Serializable{ +public class H5O_hdr_info_t implements Serializable { private static final long serialVersionUID = 7883826382952577189L; public int version; /* Version number of header format in file */ public int nmesgs; /* Number of object header messages */ @@ -44,4 +44,38 @@ public class H5O_hdr_info_t implements Serializable{ this.mesg_present = mesg_present; this.mesg_shared = mesg_shared; } + + @Override + public boolean equals(Object o) { + if (this == o) + return true; + + if (!(o instanceof H5O_hdr_info_t)) + return false; + + H5O_hdr_info_t info = (H5O_hdr_info_t) o; + + if (this.version != info.version) + return false; + if (this.nmesgs != info.nmesgs) + return false; + if (this.nchunks != info.nchunks) + return false; + if (this.flags != info.flags) + return false; + if (this.space_total != info.space_total) + return false; + if (this.space_meta != info.space_meta) + return false; + if (this.space_mesg != info.space_mesg) + return false; + if (this.space_free != info.space_free) + return false; + if (this.mesg_present != info.mesg_present) + return false; + if (this.mesg_shared != info.mesg_shared) + return false; + + return true; + } } diff --git a/java/src/hdf/hdf5lib/structs/H5O_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_info_t.java index ac32f6a..6a26a10 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_info_t.java @@ -15,38 +15,30 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) -public class H5O_info_t implements Serializable{ +// Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) +public class H5O_info_t implements Serializable { private static final long serialVersionUID = 4691681163544054518L; - public long fileno; /* File number that object is located in */ - public long addr; /* Object address in file */ - public int type; /* Basic object type (group, dataset, etc.) */ - public int rc; /* Reference count of object */ - public long atime; /* Access time */ - public long mtime; /* Modification time */ - public long ctime; /* Change time */ - public long btime; /* Birth time */ - public long num_attrs; /* # of attributes attached to object */ - public H5O_hdr_info_t hdr; /* Object header information */ - /* Extra metadata storage for obj & attributes */ - public H5_ih_info_t meta_size_obj; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */ - public H5_ih_info_t meta_size_attr; /* v2 B-tree & heap for attributes */ + public long fileno; /* File number that object is located in */ + public H5O_token_t token; /* Object token in file */ + public int type; /* Basic object type (group, dataset, etc.) */ + public int rc; /* Reference count of object */ + public long atime; /* Access time */ + public long mtime; /* Modification time */ + public long ctime; /* Change time */ + public long btime; /* Birth time */ + public long num_attrs; /* # of attributes attached to object */ - public H5O_info_t (long fileno, long addr, int type, - int rc, long num_attrs, long atime, long mtime, long ctime, long btime, - H5O_hdr_info_t hdr, H5_ih_info_t meta_size_obj, H5_ih_info_t meta_size_attr) + public H5O_info_t (long fileno, H5O_token_t token, int type, + int rc, long atime, long mtime, long ctime, long btime, long num_attrs) { this.fileno = fileno; - this.addr = addr; + this.token = token; this.type = type; this.rc = rc; - this.num_attrs = num_attrs; this.atime = atime; this.mtime = mtime; this.ctime = ctime; this.btime = btime; - this.hdr = hdr; - this.meta_size_obj = meta_size_obj; - this.meta_size_attr = meta_size_attr; + this.num_attrs = num_attrs; } } diff --git a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java new file mode 100644 index 0000000..4e80849 --- /dev/null +++ b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java @@ -0,0 +1,52 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +package hdf.hdf5lib.structs; + +import java.io.Serializable; + +// Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx). +public class H5O_native_info_t implements Serializable { + private static final long serialVersionUID = 7883826382952577189L; + + public H5O_hdr_info_t hdr_info; /* Object header information */ + + /* Extra metadata storage for obj & attributes */ + public H5_ih_info_t obj_info; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */ + public H5_ih_info_t attr_info; /* v2 B-tree & heap for attributes */ + + H5O_native_info_t (H5O_hdr_info_t oheader_info, H5_ih_info_t obj_info, H5_ih_info_t attr_info) + { + this.hdr_info = oheader_info; + this.obj_info = obj_info; + this.attr_info = attr_info; + } + + @Override + public boolean equals(Object o) { + if (this == o) + return true; + + if (!(o instanceof H5O_native_info_t)) + return false; + + H5O_native_info_t info = (H5O_native_info_t) o; + + if (!this.hdr_info.equals(info.hdr_info) + || !this.obj_info.equals(info.obj_info) + || !this.attr_info.equals(info.attr_info)) + return false; + + return true; + } +}
\ No newline at end of file diff --git a/java/src/hdf/hdf5lib/structs/H5O_token_t.java b/java/src/hdf/hdf5lib/structs/H5O_token_t.java new file mode 100644 index 0000000..8ec0b7f --- /dev/null +++ b/java/src/hdf/hdf5lib/structs/H5O_token_t.java @@ -0,0 +1,45 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +package hdf.hdf5lib.structs; + +import java.io.Serializable; +import java.util.Arrays; + +import hdf.hdf5lib.HDF5Constants; + +// Object token, which is a unique and permanent identifier, for an HDF5 object within a container. +public class H5O_token_t implements Serializable { + private static final long serialVersionUID = -4754320605310155032L; + public byte[] data; + + H5O_token_t (byte[] data) { + this.data = data; + } + + public boolean isUndefined() { + return this.equals(HDF5Constants.H5O_TOKEN_UNDEF); + } + + @Override + public boolean equals(Object o) { + if (this == o) + return true; + + if (!(o instanceof H5O_token_t)) + return false; + + H5O_token_t token = (H5O_token_t) o; + + return Arrays.equals(this.data, token.data); + } +}
\ No newline at end of file diff --git a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java index ea36d85..7159f02 100644 --- a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java @@ -26,4 +26,22 @@ public class H5_ih_info_t implements Serializable { this.index_size = index_size; this.heap_size = heap_size; } + + @Override + public boolean equals(Object o) { + if (this == o) + return true; + + if (!(o instanceof H5_ih_info_t)) + return false; + + H5_ih_info_t info = (H5_ih_info_t) o; + + if (this.index_size != info.index_size) + return false; + if (this.heap_size != info.heap_size) + return false; + + return true; + } } diff --git a/java/src/jni/exceptionImp.c b/java/src/jni/exceptionImp.c index 0faa0cc..c08b67b 100644 --- a/java/src/jni/exceptionImp.c +++ b/java/src/jni/exceptionImp.c @@ -409,7 +409,7 @@ h5libraryError if (msg_size > 0) { if (NULL == (msg_str = (char *) HDcalloc((size_t)msg_size + 1, sizeof(char)))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5libraryerror: failed to allocate buffer for error message"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5libraryerror: failed to allocate buffer for error message"); if ((msg_size = H5Eget_msg(min_num, &error_msg_type, msg_str, (size_t)msg_size + 1)) < 0) goto done; diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c index 05dc2ea..77a5d18 100644 --- a/java/src/jni/h5Constants.c +++ b/java/src/jni/h5Constants.c @@ -684,11 +684,13 @@ Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1TIME(JNIEnv *env, jclass cls) { return JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1NUM_1ATTRS(JNIEnv *env, jclass cls) { return H5O_INFO_NUM_ATTRS; } JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1HDR(JNIEnv *env, jclass cls) { return H5O_INFO_HDR; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1ALL(JNIEnv *env, jclass cls) { return H5O_INFO_ALL; } JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1META_1SIZE(JNIEnv *env, jclass cls) { return H5O_INFO_META_SIZE; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1NATIVE_1INFO_1HDR(JNIEnv *env, jclass cls) { return H5O_NATIVE_INFO_HDR; } JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1ALL(JNIEnv *env, jclass cls) { return H5O_INFO_ALL; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1NATIVE_1INFO_1META_1SIZE(JNIEnv *env, jclass cls) { return H5O_NATIVE_INFO_META_SIZE; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1NATIVE_1INFO_1ALL(JNIEnv *env, jclass cls) { return H5O_NATIVE_INFO_ALL; } JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1NONE_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_NONE_FLAG; } JNIEXPORT jint JNICALL @@ -713,6 +715,16 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1NAMED_1DATATYPE(JNIEnv *env, jclass cls) { return H5O_TYPE_NAMED_DATATYPE; } JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1NTYPES(JNIEnv *env, jclass cls) { return H5O_TYPE_NTYPES; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1MAX_1TOKEN_1SIZE(JNIEnv *env, jclass cls) { return H5O_MAX_TOKEN_SIZE; } +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1TOKEN_1UNDEF(JNIEnv *env, jclass cls) +{ + H5O_token_t undef_token = H5O_TOKEN_UNDEF; + + /* TODO: Can be optimized by keeping a global reference to the undefined token class */ + return create_H5O_token_t(env, &undef_token, FALSE); +} JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1ROOT(JNIEnv *env, jclass cls){return H5P_ROOT;} diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c index 85872b2..fb933ad 100644 --- a/java/src/jni/h5aImp.c +++ b/java/src/jni/h5aImp.c @@ -841,10 +841,10 @@ Java_hdf_hdf5lib_H5_H5Aread_1string H5_LIBRARY_ERROR(ENVONLY); if (NULL == (cstr = (char *) HDmalloc(str_len + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_string: memory allocation failed"); if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_string: memory allocation failed"); if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, c_buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -855,7 +855,7 @@ Java_hdf_hdf5lib_H5_H5Aread_1string if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_string: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, j_buf, i, jstr); @@ -905,7 +905,7 @@ Java_hdf_hdf5lib_H5_H5Awrite_1string H5_LIBRARY_ERROR(ENVONLY); if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Awrite_string: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Awrite_string: memory allocation failed"); for (i = 0; i < (size_t) n; i++) { if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize) i))) { @@ -1037,7 +1037,7 @@ H5AreadVL_str } if (NULL == (strs = (char **) HDcalloc((size_t)n, sizeof(char *)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_str: failed to allocate variable length string read buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadVL_str: failed to allocate variable length string read buffer"); if ((status = H5Aread(aid, tid, strs)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1110,7 +1110,7 @@ H5AreadVL_asstr H5_LIBRARY_ERROR(ENVONLY); if (NULL == (readBuf = HDcalloc((size_t)n, typeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate read buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate read buffer"); if ((status = H5Aread(aid, tid, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1119,7 +1119,7 @@ H5AreadVL_asstr h5str_new(&h5str, 4 * typeSize); if (!h5str.s) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate buffer"); /* Convert each element to a char string */ for (i = 0; i < (size_t) n; i++) { @@ -1243,7 +1243,7 @@ H5AwriteVL_str } if (NULL == (writeBuf = (char **) HDcalloc((size_t)size + 1, sizeof(char *)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate variable length string write buffer") + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate variable length string write buffer"); for (i = 0; i < size; ++i) { jsize length; @@ -1264,7 +1264,7 @@ H5AwriteVL_str PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5AwriteVL_str: string not pinned"); if (NULL == (writeBuf[i] = (char *) HDmalloc((size_t)length + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate string buffer"); HDstrncpy(writeBuf[i], utf8, (size_t)length); writeBuf[i][length] = '\0'; @@ -1325,7 +1325,7 @@ H5AwriteVL_asstr H5_LIBRARY_ERROR(ENVONLY); if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer"); /* * When repeatedly writing a dataset with a large number of strs (e.g., 1,000,000 strings), @@ -1406,7 +1406,7 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref } if (NULL == (ref_data = (H5R_ref_t *) HDcalloc(1, (size_t)n * sizeof(H5R_ref_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate read buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate read buffer"); if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, ref_data)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1414,7 +1414,7 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref h5str_new(&h5str, 1024); if (!h5str.s) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate buffer"); for (i = 0; i < n; i++) { h5str.s[0] = '\0'; @@ -1499,7 +1499,7 @@ Java_hdf_hdf5lib_H5_H5Aget_1name H5_LIBRARY_ERROR(ENVONLY); if (NULL == (attrName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aget_name: failed to allocate attribute name buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aget_name: failed to allocate attribute name buffer"); if (H5Aget_name((hid_t)attr_id, (size_t)buf_size + 1, attrName) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1856,7 +1856,7 @@ Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx H5_LIBRARY_ERROR(ENVONLY); if (NULL == (attrName = (char *) HDmalloc(sizeof(char) * (size_t) status_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aget_name_by_idx: failed to allocate buffer for attribute name"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aget_name_by_idx: failed to allocate buffer for attribute name"); if ((H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t) order, (hsize_t) n, (char *)attrName, (size_t)status_size + 1, (hid_t)lapl_id)) < 0) @@ -2162,7 +2162,7 @@ static herr_t H5A_iterate_cb (hid_t g_id, const char *name, const H5A_info_t *info, void *cb_data) { cb_wrapper *wrapper = (cb_wrapper *)cb_data; - jmethodID constructor, mid; + jmethodID mid; jobject cb_info_t = NULL; jobject visit_callback = wrapper->visit_callback; jstring str; @@ -2191,18 +2191,7 @@ H5A_iterate_cb args[2].i = info->cset; args[3].j = (jlong)info->data_size; - /* Get a reference to your class if you don't have it already */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5A_info_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* Get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(ZJIJ)V"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("FATAL ERROR: hdf/hdf5lib/structs/H5A_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - } + CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args, cb_info_t); status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data); CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c index 352c047..bcefe12 100644 --- a/java/src/jni/h5dImp.c +++ b/java/src/jni/h5dImp.c @@ -975,10 +975,10 @@ Java_hdf_hdf5lib_H5_H5Dread_1string H5_LIBRARY_ERROR(ENVONLY); if (NULL == (cstr = (char *) HDmalloc(str_len + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_string: memory allocation failed"); if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_string: memory allocation failed"); if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf)) < 0) @@ -990,7 +990,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1string if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_string: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, j_buf, i, jstr); @@ -1041,7 +1041,7 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string H5_LIBRARY_ERROR(ENVONLY); if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dwrite_string: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dwrite_string: memory allocation failed"); for (i = 0; i < (size_t) n; i++) { if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize) i))) { @@ -1177,7 +1177,7 @@ H5DreadVL_str } if (NULL == (strs = (char **) HDcalloc((size_t)n, sizeof(char *)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_str: failed to allocate variable length string read buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DreadVL_str: failed to allocate variable length string read buffer"); if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, strs)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1263,7 +1263,7 @@ H5DreadVL_asstr H5_LIBRARY_ERROR(ENVONLY); if (NULL == (readBuf = HDcalloc((size_t)n, typeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate read buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate read buffer"); if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1272,7 +1272,7 @@ H5DreadVL_asstr h5str_new(&h5str, 4 * typeSize); if (!h5str.s) - H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate buffer"); if ((tclass = H5Tget_class(tid)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1442,7 +1442,7 @@ H5DwriteVL_str } if (NULL == (writeBuf = (char **) HDcalloc((size_t)size + 1, sizeof(char *)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate variable length string write buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate variable length string write buffer"); for (i = 0; i < size; ++i) { jsize length; @@ -1463,7 +1463,7 @@ H5DwriteVL_str PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5DwriteVL_str: string not pinned"); if (NULL == (writeBuf[i] = (char *) HDmalloc((size_t)length + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate string buffer"); HDstrncpy(writeBuf[i], utf8, (size_t)length + 1); writeBuf[i][length] = '\0'; @@ -1536,7 +1536,7 @@ H5DwriteVL_asstr H5_LIBRARY_ERROR(ENVONLY); if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer"); for (i = 0; i < (size_t) n; ++i) { if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize) i))) { @@ -1646,7 +1646,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref } if (NULL == (ref_data = (H5R_ref_t *) HDcalloc(1, (size_t)n * sizeof(H5R_ref_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate read buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate read buffer"); if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, xfer_plist_id, ref_data)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1654,7 +1654,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref h5str_new(&h5str, 1024); if (!h5str.s) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate buffer"); for (i = 0; i < n; i++) { h5str.s[0] = '\0'; @@ -1909,7 +1909,7 @@ Java_hdf_hdf5lib_H5_H5Dset_1extent PIN_LONG_ARRAY(ENVONLY, buf, dimsBuf, &isCopy, "H5Dset_extent: buffer not pinned"); if (NULL == (dims = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dset_extent: failed to allocate dataset dimension buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dset_extent: failed to allocate dataset dimension buffer"); for (i = 0; i < rank; i++) dims[i] = (hsize_t)dimsBuf[i]; diff --git a/java/src/jni/h5eImp.c b/java/src/jni/h5eImp.c index 937323e..7ea4223 100644 --- a/java/src/jni/h5eImp.c +++ b/java/src/jni/h5eImp.c @@ -309,7 +309,7 @@ Java_hdf_hdf5lib_H5_H5Eget_1class_1name H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_class_name: no class name"); if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_class_name: malloc failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Eget_class_name: malloc failed"); if ((H5Eget_class_name((hid_t)cls_id, (char *)namePtr, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -464,10 +464,10 @@ Java_hdf_hdf5lib_H5_H5Eget_1msg H5_LIBRARY_ERROR(ENVONLY); if (!buf_size) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_msg: invalid message"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_msg: invalid message"); if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_msg: malloc failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Eget_msg: malloc failed"); PIN_INT_ARRAY(ENVONLY, error_msg_type_list, theArray, NULL, "H5Eget_msg: error_msg_type_list not pinned"); @@ -517,7 +517,6 @@ H5E_walk_cb (int nindx, const H5E_error2_t *info, void *cb_data) { cb_wrapper *wrapper = (cb_wrapper *)cb_data; - jmethodID constructor; jmethodID mid; jobject visit_callback = wrapper->visit_callback; jstring str1, str2, str3; @@ -559,16 +558,7 @@ H5E_walk_cb args[6].l = str3; - /* Get a reference to your class if you don't have it already */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5E_error2_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJJILjava/lang/String;Ljava/lang/String;Ljava/lang/String;)V"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); + CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5E_error2_t", "(JJJILjava/lang/String;Ljava/lang/String;Ljava/lang/String;)V", args, cb_info_t); status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, nindx, cb_info_t, op_data); CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c index 2eb3ad5..3b7b96c 100644 --- a/java/src/jni/h5fImp.c +++ b/java/src/jni/h5fImp.c @@ -131,7 +131,7 @@ Java_hdf_hdf5lib_H5_H5Fget_1name H5_LIBRARY_ERROR(ENVONLY); if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_name: malloc failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Fget_name: malloc failed"); if ((H5Fget_name((hid_t)file_id, namePtr, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -446,7 +446,7 @@ Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids } if (NULL == (id_list = (hid_t *) HDmalloc((size_t)rank * sizeof(hid_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_obj_ids: malloc failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Fget_obj_ids: malloc failed"); if ((ret_val = H5Fget_obj_ids((hid_t)file_id, (unsigned int)types, (size_t)maxObjs, id_list)) < 0) H5_LIBRARY_ERROR(ENVONLY); diff --git a/java/src/jni/h5iImp.c b/java/src/jni/h5iImp.c index a367802..e8030aee 100644 --- a/java/src/jni/h5iImp.c +++ b/java/src/jni/h5iImp.c @@ -71,7 +71,7 @@ Java_hdf_hdf5lib_H5_H5Iget_1name_1long H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Iget_name_long: buf_size < 0"); if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Iget_name_long: malloc failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Iget_name_long: malloc failed"); if ((size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -111,7 +111,7 @@ Java_hdf_hdf5lib_H5_H5Iget_1name H5_LIBRARY_ERROR(ENVONLY); if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Iget_name: malloc failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Iget_name: malloc failed"); if (H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); diff --git a/java/src/jni/h5jni.h b/java/src/jni/h5jni.h index 4a94180..f583630 100644 --- a/java/src/jni/h5jni.h +++ b/java/src/jni/h5jni.h @@ -47,195 +47,6 @@ */ #define UNUSED(o) (void) o -/* Macros for class access */ -/* Calling code must define ret_obj as jobject */ -#define CALL_CONSTRUCTOR(env, classname, classsig, args, ret_obj) \ -{ \ - jmethodID constructor; \ - jclass cls; \ - \ - if (NULL == (cls = ENVPTR->FindClass(env, (classname)))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, "JNI error: GetObjectClass"); \ - } \ - if (NULL == (constructor = ENVPTR->GetMethodID(ENVONLY, cls, "<init>", (classsig)))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, "JNI error: GetMethodID failed"); \ - } \ - if (NULL == (ret_obj = ENVPTR->NewObjectA(ENVONLY, cls, constructor, (args)))) { \ - CHECK_JNI_EXCEPTION(env, JNI_FALSE); \ - } \ -} - -/* - * Macros for pinning/unpinning objects. - */ -#define PIN_BYTE_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetByteArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_BYTE_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jbyte *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_BYTE_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseByteArrayElements(env, pinnedArray, (jbyte *) bufToRelease, freeMode); \ -} - -#define PIN_SHORT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetShortArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_SHORT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jshort *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_SHORT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseShortArrayElements(env, pinnedArray, (jshort *) bufToRelease, freeMode); \ -} - -#define PIN_INT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetIntArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_INT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jint *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_INT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseIntArrayElements(env, pinnedArray, (jint *) bufToRelease, freeMode); \ -} - -#define PIN_LONG_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetLongArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_LONG_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jlong *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_LONG_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseLongArrayElements(env, pinnedArray, (jlong *) bufToRelease, freeMode); \ -} - -#define PIN_FLOAT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetFloatArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_FLOAT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jfloat *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_FLOAT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseFloatArrayElements(env, pinnedArray, (jfloat *) bufToRelease, freeMode); \ -} - -#define PIN_DOUBLE_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetDoubleArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_DOUBLE_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jdouble *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_DOUBLE_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseDoubleArrayElements(env, pinnedArray, (jdouble *) bufToRelease, freeMode); \ -} - -#define PIN_BOOL_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetBooleanArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_BOOL_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jboolean *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_BOOL_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseBooleanArrayElements(env, pinnedArray, (jboolean *) bufToRelease, freeMode); \ -} - -#define UNPIN_ARRAY_CRITICAL(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleasePrimitiveArrayCritical(env, pinnedArray, bufToRelease, freeMode); \ -} - -/* Macros for string access */ -#define PIN_JAVA_STRING(env, stringToPin, outString, isCopy, failErrMsg) \ -{ \ - if (NULL == (outString = ENVPTR->GetStringUTFChars(env, stringToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_JAVA_STRING(env, pinnedString, stringToRelease) \ -{ \ - ENVPTR->ReleaseStringUTFChars(env, pinnedString, stringToRelease); \ -} - /* * Macro to check for a JNI exception after a JNI method is called. * If an exception occurred, the value of 'clearException' will determine @@ -246,15 +57,205 @@ * cleanup+return section of the native method, since at that point * cleaning up and returning is the only safe thing that can be done. */ -#define CHECK_JNI_EXCEPTION(env, clearException) \ -{ \ - if (JNI_TRUE == (*env)->ExceptionCheck(env)) { \ - if (JNI_TRUE == clearException) \ - (*env)->ExceptionClear(env); \ - else \ - goto done; \ - } \ -} +#define CHECK_JNI_EXCEPTION(envptr, clearException) \ +do { \ + if (JNI_TRUE == (*envptr)->ExceptionCheck(envptr)) { \ + if (JNI_TRUE == clearException) \ + (*envptr)->ExceptionClear(envptr); \ + else \ + goto done; \ + } \ +} while(0) + +/* Macros for class access */ +/* Calling code must define ret_obj as jobject */ +#define CALL_CONSTRUCTOR(envptr, classname, classsig, args, ret_obj) \ +do { \ + jmethodID constructor; \ + jclass cls; \ + \ + if (NULL == (cls = (*envptr)->FindClass(envptr, (classname)))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, "JNI error: GetObjectClass"); \ + } \ + if (NULL == (constructor = (*envptr)->GetMethodID(envptr, cls, "<init>", (classsig)))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, "JNI error: GetMethodID failed"); \ + } \ + if (NULL == (ret_obj = (*envptr)->NewObjectA(envptr, cls, constructor, (args)))) { \ + HDprintf("FATAL ERROR: %s: Creation failed\n", classname); \ + CHECK_JNI_EXCEPTION(envptr, JNI_FALSE); \ + } \ +} while(0) + +/* + * Macros for pinning/unpinning objects. + */ +#define PIN_BYTE_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (*envptr)->GetByteArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define PIN_BYTE_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (jbyte *) (*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define UNPIN_BYTE_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ +do { \ + (*envptr)->ReleaseByteArrayElements(envptr, pinnedArray, (jbyte *) bufToRelease, freeMode); \ +} while(0) + +#define PIN_SHORT_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (*envptr)->GetShortArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define PIN_SHORT_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (jshort *) (*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define UNPIN_SHORT_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ +do { \ + (*envptr)->ReleaseShortArrayElements(envptr, pinnedArray, (jshort *) bufToRelease, freeMode); \ +} while(0) + +#define PIN_INT_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (*envptr)->GetIntArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define PIN_INT_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (jint *) (*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define UNPIN_INT_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ +do { \ + (*envptr)->ReleaseIntArrayElements(envptr, pinnedArray, (jint *) bufToRelease, freeMode); \ +} while(0) + +#define PIN_LONG_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (*envptr)->GetLongArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define PIN_LONG_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (jlong *) (*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define UNPIN_LONG_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ +do { \ + (*envptr)->ReleaseLongArrayElements(envptr, pinnedArray, (jlong *) bufToRelease, freeMode); \ +} while(0) + +#define PIN_FLOAT_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (*envptr)->GetFloatArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define PIN_FLOAT_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (jfloat *) (*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define UNPIN_FLOAT_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ +do { \ + (*envptr)->ReleaseFloatArrayElements(envptr, pinnedArray, (jfloat *) bufToRelease, freeMode); \ +} while(0) + +#define PIN_DOUBLE_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (*envptr)->GetDoubleArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define PIN_DOUBLE_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (jdouble *) (*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define UNPIN_DOUBLE_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ +do { \ + (*envptr)->ReleaseDoubleArrayElements(envptr, pinnedArray, (jdouble *) bufToRelease, freeMode); \ +} while(0) + +#define PIN_BOOL_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (*envptr)->GetBooleanArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define PIN_BOOL_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ +do { \ + if (NULL == (outBuf = (jboolean *) (*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define UNPIN_BOOL_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ +do { \ + (*envptr)->ReleaseBooleanArrayElements(envptr, pinnedArray, (jboolean *) bufToRelease, freeMode); \ +} while(0) + +#define UNPIN_ARRAY_CRITICAL(envptr, pinnedArray, bufToRelease, freeMode) \ +do { \ + (*envptr)->ReleasePrimitiveArrayCritical(envptr, pinnedArray, bufToRelease, freeMode); \ +} while(0) + +/* Macros for string access */ +#define PIN_JAVA_STRING(envptr, stringToPin, outString, isCopy, failErrMsg) \ +do { \ + if (NULL == (outString = (*envptr)->GetStringUTFChars(envptr, stringToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ +} while(0) + +#define UNPIN_JAVA_STRING(envptr, pinnedString, stringToRelease) \ +do { \ + (*envptr)->ReleaseStringUTFChars(envptr, pinnedString, stringToRelease); \ +} while(0) #ifdef __cplusplus extern "C" { @@ -279,46 +280,46 @@ extern jboolean h5unimplemented( JNIEnv *env, const char *functName); * then do its own error handling, but we instead opt to immediately return. */ #define H5_JNI_FATAL_ERROR(env, message) \ -{ \ +do { \ h5JNIFatalError(env, message); \ goto done; \ -} +} while(0) #define H5_NULL_ARGUMENT_ERROR(env, message) \ -{ \ +do { \ h5nullArgument(env, message); \ goto done; \ -} +} while(0) #define H5_BAD_ARGUMENT_ERROR(env, message) \ -{ \ +do { \ h5badArgument(env, message); \ goto done; \ -} +} while(0) #define H5_OUT_OF_MEMORY_ERROR(env, message) \ -{ \ +do { \ h5outOfMemory(env, message); \ goto done; \ -} +} while(0) #define H5_LIBRARY_ERROR(env) \ -{ \ +do { \ h5libraryError(env); \ goto done; \ -} +} while(0) #define H5_RAISE_EXCEPTION(env, message, exception) \ -{ \ +do { \ h5raiseException(env, message, exception); \ goto done; \ -} +} while(0) #define H5_UNIMPLEMENTED(env, message) \ -{ \ +do { \ h5unimplemented(env, message); \ goto done; \ -} +} while(0) /* implemented at H5.c */ extern jint get_enum_value(JNIEnv *env, jobject enum_obj); @@ -328,6 +329,9 @@ extern jobject get_enum_object(JNIEnv *env, const char* enum_class_name, /* implemented at H5G.c */ extern jobject create_H5G_info_t(JNIEnv *env, H5G_info_t group_info); +/* implemented at h5oimp.c */ +extern jobject create_H5O_token_t(JNIEnv *env, const H5O_token_t *token, hbool_t is_critical_pinning); + #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5lImp.c b/java/src/jni/h5lImp.c index 7eee3d4..e60e1ab 100644 --- a/java/src/jni/h5lImp.c +++ b/java/src/jni/h5lImp.c @@ -41,7 +41,7 @@ typedef struct _cb_wrapper { /* Local Prototypes */ /********************/ -static herr_t H5L_iterate_cb(hid_t g_id, const char *name, const H5L_info_t *info, void *cb_data); +static herr_t H5L_iterate_cb(hid_t g_id, const char *name, const H5L_info2_t *info, void *cb_data); /* * Class: hdf_hdf5lib_H5 @@ -281,11 +281,11 @@ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Lget_1info (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) { - H5L_info_t infobuf; - const char *linkName = NULL; - jvalue args[5]; - herr_t status = FAIL; - jobject ret_obj = NULL; + H5L_info2_t infobuf; + const char *linkName = NULL; + jvalue args[5]; + herr_t status = FAIL; + jobject ret_obj = NULL; UNUSED(clss); @@ -294,16 +294,38 @@ Java_hdf_hdf5lib_H5_H5Lget_1info PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lget_info: link name not pinned"); - if ((status = H5Lget_info((hid_t)loc_id, linkName, &infobuf, (hid_t)access_id)) < 0) + if ((status = H5Lget_info2((hid_t)loc_id, linkName, &infobuf, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - args[0].i = infobuf.type; - args[1].z = infobuf.corder_valid; - args[2].j = infobuf.corder; - args[3].i = infobuf.cset; - args[4].j = (infobuf.type == H5L_TYPE_HARD) ? (jlong) infobuf.u.address : (jlong) infobuf.u.val_size; + /* + * Set the last argument based upon whether this is a hard link (which returns object tokens) + * or a soft/user-defined link (which returns the link's value size). Then, call the appropriate + * constructor to instantiate an H5L_info_t object. + */ + if (infobuf.type == H5L_TYPE_HARD) { + jobject token; + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.u.token, FALSE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + args[0].i = infobuf.type; + args[1].z = infobuf.corder_valid; + args[2].j = infobuf.corder; + args[3].i = infobuf.cset; + args[4].l = token; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJILhdf/hdf5lib/structs/H5O_token_t;)V", args, ret_obj); + } + else { + args[0].i = infobuf.type; + args[1].z = infobuf.corder_valid; + args[2].j = infobuf.corder; + args[3].i = infobuf.cset; + args[4].j = (jlong)infobuf.u.val_size; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj); + } done: if (linkName) @@ -322,11 +344,11 @@ Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order, jlong link_n, jlong access_id) { - H5L_info_t infobuf; - const char *groupName = NULL; - jvalue args[5]; - herr_t status = FAIL; - jobject ret_obj = NULL; + H5L_info2_t infobuf; + const char *groupName = NULL; + jvalue args[5]; + herr_t status = FAIL; + jobject ret_obj = NULL; UNUSED(clss); @@ -335,16 +357,38 @@ Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Lget_info_by_idx: group name not pinned"); - if ((status = H5Lget_info_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0) + if ((status = H5Lget_info_by_idx2((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - args[0].i = infobuf.type; - args[1].z = infobuf.corder_valid; - args[2].j = infobuf.corder; - args[3].i = infobuf.cset; - args[4].j = (infobuf.type == H5L_TYPE_HARD) ? (jlong) infobuf.u.address : (jlong) infobuf.u.val_size; + /* + * Set the last argument based upon whether this is a hard link (which returns object tokens) + * or a soft/user-defined link (which returns the link's value size). Then, call the appropriate + * constructor to instantiate an H5L_info_t object. + */ + if (infobuf.type == H5L_TYPE_HARD) { + jobject token; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj); + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.u.token, FALSE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + args[0].i = infobuf.type; + args[1].z = infobuf.corder_valid; + args[2].j = infobuf.corder; + args[3].i = infobuf.cset; + args[4].l = token; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJILhdf/hdf5lib/structs/H5O_token_t;)V", args, ret_obj); + } + else { + args[0].i = infobuf.type; + args[1].z = infobuf.corder_valid; + args[2].j = infobuf.corder; + args[3].i = infobuf.cset; + args[4].j = (jlong)infobuf.u.val_size; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj); + } done: if (groupName) @@ -381,7 +425,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx /* add extra space for the null terminator */ if (NULL == (linkName = (char *) HDmalloc(sizeof(char) * (size_t)status_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_name_by_idx: failed to allocate buffer for link name"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_name_by_idx: failed to allocate buffer for link name"); if ((H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char *)linkName, (size_t)status_size + 1, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -408,13 +452,13 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lget_1value (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jobjectArray link_value, jlong access_id) { - H5L_info_t infobuf; - const char *file_name = NULL; - const char *obj_name = NULL; - const char *linkName = NULL; - jstring str; - herr_t status; - char *linkValue = NULL; + H5L_info2_t infobuf; + const char *file_name = NULL; + const char *obj_name = NULL; + const char *linkName = NULL; + jstring str; + herr_t status; + char *linkValue = NULL; UNUSED(clss); @@ -426,14 +470,14 @@ Java_hdf_hdf5lib_H5_H5Lget_1value PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lget_value: link name not pinned"); /* Get the length of the link value */ - if ((status = H5Lget_info((hid_t)loc_id, linkName, &infobuf, H5P_DEFAULT)) < 0) + if ((status = H5Lget_info2((hid_t)loc_id, linkName, &infobuf, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (H5L_TYPE_HARD == infobuf.type) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: hard links are unsupported"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val: hard links are unsupported"); if (NULL == (linkValue = (char *) HDmalloc(sizeof(char) * infobuf.u.val_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: failed to allocate buffer for link value"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_val: failed to allocate buffer for link value"); if ((status = H5Lget_val((hid_t)loc_id, linkName, (void *)linkValue, infobuf.u.val_size + 1, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -475,7 +519,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1value case H5L_TYPE_MAX: case H5L_TYPE_HARD: default: - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: invalid link type"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val: invalid link type"); break; } @@ -498,13 +542,13 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order, jlong link_n, jobjectArray link_value, jlong access_id) { - H5L_info_t infobuf; - const char *file_name = NULL; - const char *obj_name = NULL; - const char *grpName = NULL; - jstring str; - herr_t status; - void *linkValue = NULL; + H5L_info2_t infobuf; + const char *file_name = NULL; + const char *obj_name = NULL; + const char *grpName = NULL; + jstring str; + herr_t status; + void *linkValue = NULL; UNUSED(clss); @@ -516,17 +560,17 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Lget_val_by_idx: group name not pinned"); /* Get the length of the link value */ - if ((status = H5Lget_info_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0) + if ((status = H5Lget_info_by_idx2((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (H5L_TYPE_HARD == infobuf.type) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: hard links are unsupported") + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val_by_idx: hard links are unsupported"); if (!infobuf.u.val_size) H5_LIBRARY_ERROR(ENVONLY); if (NULL == (linkValue = (void *) HDmalloc(infobuf.u.val_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: failed to allocate buffer for link value"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_val_by_idx: failed to allocate buffer for link value"); if ((status = H5Lget_val_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (void *)linkValue, infobuf.u.val_size + 1, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -568,7 +612,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx case H5L_TYPE_MAX: case H5L_TYPE_HARD: default: - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: invalid link type"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val_by_idx: invalid link type"); break; } @@ -615,12 +659,15 @@ done: UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName); } /* end Java_hdf_hdf5lib_H5_H5Lmove */ +/* + * Shim function for link iteration and link visiting which + */ static herr_t H5L_iterate_cb - (hid_t g_id, const char *name, const H5L_info_t *info, void *cb_data) + (hid_t g_id, const char *name, const H5L_info2_t *info, void *cb_data) { cb_wrapper *wrapper = (cb_wrapper *)cb_data; - jmethodID constructor, mid; + jmethodID mid; jobject cb_info_t = NULL; jobject visit_callback = wrapper->visit_callback; jstring str; @@ -635,32 +682,44 @@ H5L_iterate_cb H5_JNI_FATAL_ERROR(CBENVONLY, "H5L_iterate_cb: failed to attach current thread to JVM"); } + /* Get the Method ID for the "callback" function of the H5L_iterate_t class */ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5L_info_t;Lhdf/hdf5lib/callbacks/H5L_iterate_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5L_info_t;Lhdf/hdf5lib/callbacks/H5L_iterate_opdata_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - args[0].i = info->type; - args[1].z = info->corder_valid; - args[2].j = info->corder; - args[3].i = info->cset; - args[4].j = (info->type == H5L_TYPE_HARD) ? (jlong)info->u.address : (jlong)info->u.val_size; - - /* Get a reference to your class if you don't have it already */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5L_info_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* Get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(IZJIJ)V"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("FATAL ERROR: hdf/hdf5lib/structs/H5L_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); + /* + * Set the last argument based upon whether this is a hard link (which returns object tokens) + * or a soft/user-defined link (which returns the link's value size). Then, call the appropriate + * constructor to instantiate an H5L_info_t object. + */ + if (info->type == H5L_TYPE_HARD) { + jobject token; + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(CBENVONLY, &info->u.token, FALSE))) + CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); + + args[0].i = info->type; + args[1].z = info->corder_valid; + args[2].j = info->corder; + args[3].i = info->cset; + args[4].l = token; + + CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJILhdf/hdf5lib/structs/H5O_token_t;)V", args, cb_info_t); + } + else { + args[0].i = info->type; + args[1].z = info->corder_valid; + args[2].j = info->corder; + args[3].i = info->cset; + args[4].j = (jlong)info->u.val_size; + + CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, cb_info_t); } status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data); @@ -696,7 +755,8 @@ Java_hdf_hdf5lib_H5_H5Lvisit if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit: callback_op is NULL"); - if ((status = H5Lvisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper)) < 0) + if ((status = H5Lvisit2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, + H5L_iterate_cb, (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -731,7 +791,8 @@ Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Lvisit_by_name: group name not pinned"); - if ((status = H5Lvisit_by_name((hid_t)grp_id, grpName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper, (hid_t)access_id)) < 0) + if ((status = H5Lvisit_by_name2((hid_t)grp_id, grpName, (H5_index_t)idx_type, (H5_iter_order_t)order, + H5L_iterate_cb, (void *)&wrapper, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -765,7 +826,8 @@ Java_hdf_hdf5lib_H5_H5Literate if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate: callback_op is NULL"); - if ((status = H5Literate((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t *)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper)) < 0) + if ((status = H5Literate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, + &start_idx, H5L_iterate_cb, (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -801,7 +863,8 @@ Java_hdf_hdf5lib_H5_H5Literate_1by_1name PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Literate_by_name: group name not pinned"); - if ((status = H5Literate_by_name((hid_t)grp_id, groupName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper, (hid_t)access_id)) < 0) + if ((status = H5Literate_by_name2((hid_t)grp_id, groupName, (H5_index_t)idx_type, (H5_iter_order_t)order, + &start_idx, H5L_iterate_cb, (void*)&wrapper, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c index b49a3e9..1d828a1 100644 --- a/java/src/jni/h5oImp.c +++ b/java/src/jni/h5oImp.c @@ -40,7 +40,58 @@ typedef struct _cb_wrapper { /* Local Prototypes */ /********************/ -static herr_t H5O_iterate_cb(hid_t g_id, const char *name, const H5O_info_t *info, void *cb_data); +static herr_t H5O_iterate_cb(hid_t g_id, const char *name, const H5O_info2_t *info, void *cb_data); + +/* + * Create a java object of hdf.hdf5lib.structs.H5O_token_t. + */ +jobject +create_H5O_token_t + (JNIEnv *envptr, const H5O_token_t *token, hbool_t is_critical_pinning) +{ + jbyteArray tokenByteBuf; + jboolean token_buf_is_copy; + jvalue constructor_args[1]; + jbyte *token_buf = NULL; + jobject ret_token_obj = NULL; + + if (NULL == (tokenByteBuf = (*envptr)->NewByteArray(envptr, H5O_MAX_TOKEN_SIZE))) + CHECK_JNI_EXCEPTION(envptr, JNI_FALSE); + + if (is_critical_pinning) + PIN_BYTE_ARRAY_CRITICAL(envptr, tokenByteBuf, token_buf, &token_buf_is_copy, "create_H5O_token_t: object token buffer not pinned"); + else + PIN_BYTE_ARRAY(envptr, tokenByteBuf, token_buf, &token_buf_is_copy, "create_H5O_token_t: object token buffer not pinned"); + + HDmemcpy(token_buf, token, sizeof(H5O_token_t)); + + if (is_critical_pinning) + UNPIN_ARRAY_CRITICAL(envptr, tokenByteBuf, token_buf, 0); + else + UNPIN_BYTE_ARRAY(envptr, tokenByteBuf, token_buf, 0); + + token_buf = NULL; + + constructor_args[0].l = tokenByteBuf; + CALL_CONSTRUCTOR(envptr, "hdf/hdf5lib/structs/H5O_token_t", "([B)V", constructor_args, ret_token_obj); + + /* + * If critical pinning is being used, this routine is probably being + * called within a loop, so we'll clean up local references. + */ + if (is_critical_pinning) + (*envptr)->DeleteLocalRef(envptr, tokenByteBuf); + +done: + if (token_buf) { + if (is_critical_pinning) + UNPIN_ARRAY_CRITICAL(envptr, tokenByteBuf, token_buf, JNI_ABORT); + else + UNPIN_BYTE_ARRAY(envptr, tokenByteBuf, token_buf, JNI_ABORT); + } /* end if */ + + return ret_token_obj; +} /* end create_H5O_token_t */ /* * Class: hdf_hdf5lib_H5 @@ -134,17 +185,156 @@ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1info (JNIEnv *env, jclass clss, jlong loc_id, jint fields) { - H5O_info_t infobuf; - jobject hdrinfobuf; - jobject ihinfobuf1; - jobject ihinfobuf2; - jvalue args[12]; - herr_t status = FAIL; - jobject ret_obj = NULL; + H5O_info2_t infobuf; + jobject token; + jvalue args[9]; + herr_t status = FAIL; + jobject ret_obj = NULL; + + UNUSED(clss); + + if ((status = H5Oget_info3((hid_t)loc_id, &infobuf, (unsigned)fields)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, FALSE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + args[0].j = (jlong)infobuf.fileno; + args[1].l = token; + args[2].i = infobuf.type; + args[3].i = (jint)infobuf.rc; + args[4].j = infobuf.atime; + args[5].j = infobuf.mtime; + args[6].j = infobuf.ctime; + args[7].j = infobuf.btime; + args[8].j = (jlong)infobuf.num_attrs; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JLhdf/hdf5lib/structs/H5O_token_t;IIJJJJJ)V", args, ret_obj); + +done: + return ret_obj; +} /* end Java_hdf_hdf5lib_H5_H5Oget_1info */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_info_by_name + * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_info_t; + */ +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name + (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint fields, jlong access_id) +{ + H5O_info2_t infobuf; + const char *objName = NULL; + jobject token; + jvalue args[9]; + herr_t status = FAIL; + jobject ret_obj = NULL; UNUSED(clss); - if ((status = H5Oget_info2((hid_t)loc_id, &infobuf, (unsigned)fields)) < 0) + if (NULL == name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_info_by_name: object name is NULL"); + + PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oget_info_by_name: object name not pinned"); + + if ((status = H5Oget_info_by_name3((hid_t)loc_id, objName, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, FALSE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + args[0].j = (jlong)infobuf.fileno; + args[1].l = token; + args[2].i = infobuf.type; + args[3].i = (jint)infobuf.rc; + args[4].j = infobuf.atime; + args[5].j = infobuf.mtime; + args[6].j = infobuf.ctime; + args[7].j = infobuf.btime; + args[8].j = (jlong)infobuf.num_attrs; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JLhdf/hdf5lib/structs/H5O_token_t;IIJJJJJ)V", args, ret_obj); + +done: + if (objName) + UNPIN_JAVA_STRING(ENVONLY, name, objName); + + return ret_obj; +} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_info_by_idx + * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_info_t; + */ +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx + (JNIEnv *env, jclass clss, jlong loc_id, + jstring name, jint index_field, jint order, jlong link_n, jint fields, jlong access_id) +{ + H5O_info2_t infobuf; + const char *grpName = NULL; + jobject token; + jvalue args[9]; + herr_t status = FAIL; + jobject ret_obj = NULL; + + UNUSED(clss); + + if (NULL == name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_info_by_idx: group name is NULL"); + + PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oget_info_by_idx: group name not pinned"); + + if ((status = H5Oget_info_by_idx3((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, + &infobuf, (unsigned)fields, (hid_t)access_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, FALSE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + args[0].j = (jlong)infobuf.fileno; + args[1].l = token; + args[2].i = infobuf.type; + args[3].i = (jint)infobuf.rc; + args[4].j = infobuf.atime; + args[5].j = infobuf.mtime; + args[6].j = infobuf.ctime; + args[7].j = infobuf.btime; + args[8].j = (jlong)infobuf.num_attrs; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JLhdf/hdf5lib/structs/H5O_token_t;IIJJJJJ)V", args, ret_obj); + +done: + if (grpName) + UNPIN_JAVA_STRING(ENVONLY, name, grpName); + + return ret_obj; +} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_native_info + * Signature: (JI)Lhdf/hdf5lib/structs/H5O_native_info_t; + */ +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5Oget_1native_1info + (JNIEnv *env, jclass clss, jlong loc_id, jint fields) +{ + H5O_native_info_t infobuf; + jobject hdrinfobuf; + jobject obj_ihinfobuf; + jobject attr_ihinfobuf; + jvalue args[10]; + herr_t status = FAIL; + jobject ret_obj = NULL; + + UNUSED(clss); + + if ((status = H5Oget_native_info((hid_t)loc_id, &infobuf, (unsigned)fields)) < 0) H5_LIBRARY_ERROR(ENVONLY); args[0].i = (jint)infobuf.hdr.version; @@ -165,59 +355,50 @@ Java_hdf_hdf5lib_H5_H5Oget_1info args[1].j = (jlong)infobuf.meta_size.obj.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf1 = ret_obj; + obj_ihinfobuf = ret_obj; args[0].j = (jlong)infobuf.meta_size.attr.index_size; args[1].j = (jlong)infobuf.meta_size.attr.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf2 = ret_obj; + attr_ihinfobuf = ret_obj; - args[0].j = (jlong)infobuf.fileno; - args[1].j = (jlong)infobuf.addr; - args[2].i = infobuf.type; - args[3].i = (jint)infobuf.rc; - args[4].j = (jlong)infobuf.num_attrs; - args[5].j = infobuf.atime; - args[6].j = infobuf.mtime; - args[7].j = infobuf.ctime; - args[8].j = infobuf.btime; - args[9].l = hdrinfobuf; - args[10].l = ihinfobuf1; - args[11].l = ihinfobuf2; + args[0].l = hdrinfobuf; + args[1].l = obj_ihinfobuf; + args[2].l = attr_ihinfobuf; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_native_info_t", "(Lhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); done: return ret_obj; -} /* end Java_hdf_hdf5lib_H5_H5Oget_1info */ +} /* end Java_hdf_hdf5lib_H5_H5Oget_1native_1info */ /* * Class: hdf_hdf5lib_H5 - * Method: H5Oget_info_by_name - * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_info_t; + * Method: H5Oget_native_info_by_name + * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_native_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name +Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1name (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint fields, jlong access_id) { - H5O_info_t infobuf; - const char *objName = NULL; - jobject hdrinfobuf; - jobject ihinfobuf1; - jobject ihinfobuf2; - jvalue args[12]; - herr_t status = FAIL; - jobject ret_obj = NULL; + H5O_native_info_t infobuf; + const char *objName = NULL; + jobject hdrinfobuf; + jobject obj_ihinfobuf; + jobject attr_ihinfobuf; + jvalue args[10]; + herr_t status = FAIL; + jobject ret_obj = NULL; UNUSED(clss); if (NULL == name) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_info_by_name: object name is NULL"); + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_native_info_by_name: object name is NULL"); - PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oget_info_by_name: object name not pinned"); + PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oget_native_info_by_name: object name not pinned"); - if ((status = H5Oget_info_by_name2((hid_t)loc_id, objName, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0) + if ((status = H5Oget_native_info_by_name((hid_t)loc_id, objName, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); args[0].i = (jint)infobuf.hdr.version; @@ -238,63 +419,55 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name args[1].j = (jlong)infobuf.meta_size.obj.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf1 = ret_obj; + obj_ihinfobuf = ret_obj; args[0].j = (jlong)infobuf.meta_size.attr.index_size; args[1].j = (jlong)infobuf.meta_size.attr.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf2 = ret_obj; + attr_ihinfobuf = ret_obj; - args[0].j = (jlong)infobuf.fileno; - args[1].j = (jlong)infobuf.addr; - args[2].i = infobuf.type; - args[3].i = (jint)infobuf.rc; - args[4].j = (jlong)infobuf.num_attrs; - args[5].j = infobuf.atime; - args[6].j = infobuf.mtime; - args[7].j = infobuf.ctime; - args[8].j = infobuf.btime; - args[9].l = hdrinfobuf; - args[10].l = ihinfobuf1; - args[11].l = ihinfobuf2; + args[0].l = hdrinfobuf; + args[1].l = obj_ihinfobuf; + args[2].l = attr_ihinfobuf; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_native_info_t", "(Lhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); done: if (objName) UNPIN_JAVA_STRING(ENVONLY, name, objName); return ret_obj; -} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name */ +} /* end Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1name */ /* * Class: hdf_hdf5lib_H5 - * Method: H5Oget_info_by_idx - * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_info_t; + * Method: H5Oget_native_info_by_idx + * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_native_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx +Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1idx (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order, jlong link_n, jint fields, jlong access_id) { - H5O_info_t infobuf; - const char *grpName = NULL; - jobject hdrinfobuf; - jobject ihinfobuf1; - jobject ihinfobuf2; - jvalue args[12]; - herr_t status = FAIL; - jobject ret_obj = NULL; + H5O_native_info_t infobuf; + const char *grpName = NULL; + jobject hdrinfobuf; + jobject obj_ihinfobuf; + jobject attr_ihinfobuf; + jvalue args[10]; + herr_t status = FAIL; + jobject ret_obj = NULL; UNUSED(clss); if (NULL == name) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_info_by_idx: group name is NULL"); + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_native_info_by_idx: group name is NULL"); - PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oget_info_by_idx: group name not pinned"); + PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oget_native_info_by_idx: group name not pinned"); - if ((status = H5Oget_info_by_idx2((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0) + if ((status = H5Oget_native_info_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, + &infobuf, (unsigned)fields, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); args[0].i = (jint)infobuf.hdr.version; @@ -315,35 +488,26 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx args[1].j = (jlong)infobuf.meta_size.obj.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf1 = ret_obj; + obj_ihinfobuf = ret_obj; args[0].j = (jlong)infobuf.meta_size.attr.index_size; args[1].j = (jlong)infobuf.meta_size.attr.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf2 = ret_obj; + attr_ihinfobuf = ret_obj; - args[0].j = (jlong)infobuf.fileno; - args[1].j = (jlong)infobuf.addr; - args[2].i = infobuf.type; - args[3].i = (jint)infobuf.rc; - args[4].j = (jlong)infobuf.num_attrs; - args[5].j = infobuf.atime; - args[6].j = infobuf.mtime; - args[7].j = infobuf.ctime; - args[8].j = infobuf.btime; - args[9].l = hdrinfobuf; - args[10].l = ihinfobuf1; - args[11].l = ihinfobuf2; + args[0].l = hdrinfobuf; + args[1].l = obj_ihinfobuf; + args[2].l = attr_ihinfobuf; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_native_info_t", "(Lhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); done: if (grpName) UNPIN_JAVA_STRING(ENVONLY, name, grpName); return ret_obj; -} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx */ +} /* end Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1idx */ /* * Class: hdf_hdf5lib_H5 @@ -375,15 +539,13 @@ done: static herr_t H5O_iterate_cb - (hid_t g_id, const char *name, const H5O_info_t *info, void *cb_data) + (hid_t g_id, const char *name, const H5O_info2_t *info, void *cb_data) { cb_wrapper *wrapper = (cb_wrapper *)cb_data; - jmethodID constructor, mid; + jmethodID mid; jobject cb_info_t = NULL; jobject visit_callback = wrapper->visit_callback; - jobject hdrinfobuf; - jobject ihinfobuf1; - jobject ihinfobuf2; + jobject token; jstring str; JNIEnv *cbenv = NULL; jclass cls; @@ -399,85 +561,28 @@ H5O_iterate_cb if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5O_info_t;Lhdf/hdf5lib/callbacks/H5O_iterate_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5O_info_t;Lhdf/hdf5lib/callbacks/H5O_iterate_opdata_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - args[0].i = (jint)info->hdr.version; - args[1].i = (jint)info->hdr.nmesgs; - args[2].i = (jint)info->hdr.nchunks; - args[3].i = (jint)info->hdr.flags; - args[4].j = (jlong)info->hdr.space.total; - args[5].j = (jlong)info->hdr.space.meta; - args[6].j = (jlong)info->hdr.space.mesg; - args[7].j = (jlong)info->hdr.space.free; - args[8].j = (jlong)info->hdr.mesg.present; - args[9].j = (jlong)info->hdr.mesg.shared; - - /* Get a reference to the H5_hdr_info_t class */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5O_hdr_info_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* Get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(IIIIJJJJJJ)V"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - if (NULL == (hdrinfobuf = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_hdr_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - } - - args[0].j = (jlong)info->meta_size.obj.index_size; - args[1].j = (jlong)info->meta_size.obj.heap_size; - - /* Get a reference to the H5_ih_info_t class */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* Get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJ)V"))) + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(CBENVONLY, &info->token, FALSE))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (ihinfobuf1 = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - } - - args[0].j = (jlong)info->meta_size.attr.index_size; - args[1].j = (jlong)info->meta_size.attr.heap_size; - - if (NULL == (ihinfobuf2 = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - } - args[0].j = (jlong)info->fileno; - args[1].j = (jlong)info->addr; + args[1].l = token; args[2].i = info->type; args[3].i = (jint)info->rc; - args[4].j = (jlong)info->num_attrs; - args[5].j = info->atime; - args[6].j = info->mtime; - args[7].j = info->ctime; - args[8].j = info->btime; - args[9].l = hdrinfobuf; - args[10].l = ihinfobuf1; - args[11].l = ihinfobuf2; + args[4].j = info->atime; + args[5].j = info->mtime; + args[6].j = info->ctime; + args[7].j = info->btime; + args[8].j = (jlong)info->num_attrs; /* Get a reference to the H5O_info_t class */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5O_info_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* Get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - } + CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JLhdf/hdf5lib/structs/H5O_token_t;IIJJJJJ)V", args, cb_info_t); status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data); CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); @@ -512,7 +617,8 @@ Java_hdf_hdf5lib_H5_H5Ovisit if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit: callback_op is NULL"); - if ((status = H5Ovisit2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void *)&wrapper, (unsigned)fields)) < 0) + if ((status = H5Ovisit3((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, + H5O_iterate_cb, (void *)&wrapper, (unsigned)fields)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -547,7 +653,8 @@ Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Ovisit_by_name: object name not pinned"); - if ((status = H5Ovisit_by_name2((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void *)&wrapper, (unsigned)fields, (hid_t)access_id)) < 0) + if ((status = H5Ovisit_by_name3((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + H5O_iterate_cb, (void *)&wrapper, (unsigned)fields, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -639,7 +746,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1comment if (buf_size) { if (NULL == (oComment = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Oget_comment: failed to allocate object comment buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Oget_comment: failed to allocate object comment buffer"); if ((status = H5Oget_comment((hid_t)loc_id, oComment, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -684,7 +791,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name if (buf_size) { if (NULL == (objComment = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Oget_comment_by_name: failed to allocate buffer for object comment"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Oget_comment_by_name: failed to allocate buffer for object comment"); if ((status = H5Oget_comment_by_name((hid_t)loc_id, objName, objComment, (size_t)buf_size + 1, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -772,23 +879,46 @@ done: /* * Class: hdf_hdf5lib_H5 - * Method: _H5Oopen_by_addr - * Signature: (JJ)J; + * Method: _H5Oopen_by_token + * Signature: (JLhdf/hdf5lib/structs/H5O_token_t;)J; */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Oopen_1by_1addr - (JNIEnv *env, jclass clss, jlong loc_id, jlong addr) +Java_hdf_hdf5lib_H5__1H5Oopen_1by_1token + (JNIEnv *env, jclass clss, jlong loc_id, jobject token) { - hid_t retVal = H5I_INVALID_HID; + H5O_token_t obj_token; + jboolean token_buf_is_copy; + jfieldID token_data_field_id; + jclass token_cls; + jbyte *token_buf = NULL; + jobject token_data; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); - if ((retVal = H5Oopen_by_addr((hid_t)loc_id, (haddr_t)addr)) < 0) + token_cls = ENVPTR->GetObjectClass(ENVONLY, token); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + if (NULL == (token_data_field_id = ENVPTR->GetFieldID(ENVONLY, token_cls, "data", "[B"))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + token_data = ENVPTR->GetObjectField(ENVONLY, token, token_data_field_id); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + PIN_BYTE_ARRAY(ENVONLY, (jbyteArray)token_data, token_buf, &token_buf_is_copy, "H5Oopen_by_token: token buffer not pinned"); + HDmemcpy(&obj_token, token_buf, sizeof(H5O_token_t)); + UNPIN_BYTE_ARRAY(ENVONLY, (jbyteArray)token_data, token_buf, JNI_ABORT); + token_buf = NULL; + + if ((retVal = H5Oopen_by_token((hid_t)loc_id, obj_token)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: + if (token_buf) + UNPIN_BYTE_ARRAY(ENVONLY, (jbyteArray)token_data, token_buf, (retVal < 0) ? JNI_ABORT : 0); + return (jlong)retVal; -} /* end Java_hdf_hdf5lib_H5__1H5Oopen_1by_1addr */ +} /* end Java_hdf_hdf5lib_H5__1H5Oopen_1by_1token */ /* * Class: hdf_hdf5lib_H5 diff --git a/java/src/jni/h5oImp.h b/java/src/jni/h5oImp.h index 5241aba..2b53fd3 100644 --- a/java/src/jni/h5oImp.h +++ b/java/src/jni/h5oImp.h @@ -78,6 +78,33 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx /* * Class: hdf_hdf5lib_H5 + * Method: H5Oget_native_info + * Signature: (JI)Lhdf/hdf5lib/structs/H5O_native_info_t; + */ +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5Oget_1native_1info +(JNIEnv*, jclass, jlong, jint fields); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_native_info_by_name + * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_native_info_t; + */ +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1name +(JNIEnv*, jclass, jlong, jstring, jint fields, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_native_info_by_idx + * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_native_info_t; + */ +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1idx +(JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jint fields, jlong); + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Olink * Signature: (JJLjava/lang/String;JJ)V */ @@ -168,12 +195,12 @@ Java_hdf_hdf5lib_H5_H5Oincr_1refcount /* * Class: hdf_hdf5lib_H5 - * Method: _H5Oopen_by_addr - * Signature: (JJ)J; + * Method: _H5Oopen_by_token + * Signature: (JLhdf/hdf5lib/structs/H5O_token_t;)J; */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Oopen_1by_1addr - (JNIEnv*, jclass, jlong, jlong); +Java_hdf_hdf5lib_H5__1H5Oopen_1by_1token + (JNIEnv*, jclass, jlong, jobject); /* * Class: hdf_hdf5lib_H5 diff --git a/java/src/jni/h5pDAPLImp.c b/java/src/jni/h5pDAPLImp.c index fb39b84..2386df1 100644 --- a/java/src/jni/h5pDAPLImp.c +++ b/java/src/jni/h5pDAPLImp.c @@ -151,7 +151,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix H5_LIBRARY_ERROR(ENVONLY); if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t)prefix_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_efile_prefix: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_efile_prefix: memory allocation failed"); if (H5Pget_efile_prefix((hid_t)dapl_id, (char *)pre, (size_t)prefix_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -159,7 +159,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_efile_prefix: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_efile_prefix: out of memory - unable to construct string from UTF characters"); } done: diff --git a/java/src/jni/h5pDCPLImp.c b/java/src/jni/h5pDCPLImp.c index 7559c3b..c43079f 100644 --- a/java/src/jni/h5pDCPLImp.c +++ b/java/src/jni/h5pDCPLImp.c @@ -109,7 +109,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1chunk PIN_BYTE_ARRAY(ENVONLY, dim, theArray, &isCopy, "H5Pset_chunk: dim array not pinned"); if (NULL == (da = lp = (hsize_t *) HDmalloc(rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_chunk: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pset_chunk: memory allocation failed"); jlp = (jlong *)theArray; for (i = 0; i < rank; i++) { @@ -161,7 +161,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1chunk PIN_LONG_ARRAY(ENVONLY, dims, theArray, &isCopy, "H5Pget_chunk: input dims not pinned"); if (NULL == (da = (hsize_t *) HDmalloc((size_t)max_ndims * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_chunk: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_chunk: memory allocation failed"); if ((status = H5Pget_chunk((hid_t)plist, (int)max_ndims, da)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -595,7 +595,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: cd_values is NULL"); if (NULL == (filter = (char *) HDmalloc(sizeof(char) * (size_t)namelen))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter: flags array not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter: nelmts array not pinned"); @@ -620,7 +620,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, filter))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -632,7 +632,7 @@ done: if (cd_nelmtsArray) UNPIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, (status < 0) ? JNI_ABORT : 0); if (flagsArray) - UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0) + UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0); if (filter) HDfree(filter); @@ -671,7 +671,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter2 H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: filter_config is NULL"); if (NULL == (filter = (char *) HDmalloc(sizeof(char) * (size_t)namelen))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter2: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter2: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter2: flags array not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter2: nelmts array not pinned"); @@ -715,7 +715,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter2 if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, filter))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter2: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter2: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -772,7 +772,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: name is NULL"); if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)bs))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id: flags not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter_by_id: cd_nelms not pinned"); @@ -801,7 +801,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -858,7 +858,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: filter_config is NULL"); if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)bs))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id2: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id2: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id2: flags not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter_by_id2: cd_nelms not pinned"); @@ -882,7 +882,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id2: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id2: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -1122,7 +1122,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1external if (name_size > 0) if (NULL == (file = (char *) HDmalloc(sizeof(char) * (size_t)name_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_external: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_external: memory allocation failed"); if ((status = H5Pget_external((hid_t) plist, (unsigned)idx, (size_t)name_size, file, (off_t *)&o, (hsize_t *)&s)) < 0) @@ -1140,7 +1140,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1external if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_external: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_external: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -1250,7 +1250,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname H5_LIBRARY_ERROR(ENVONLY); if (NULL == (dname = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_dsetname: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_dsetname: memory allocation failed"); if (H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, dname, (size_t)buf_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1258,7 +1258,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, dname))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_dsetname: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_dsetname: out of memory - unable to construct string from UTF characters"); } done: @@ -1288,7 +1288,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename H5_LIBRARY_ERROR(ENVONLY); if (NULL == (fname = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_filename: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_filename: memory allocation failed"); if (H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, fname, (size_t)buf_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1296,7 +1296,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, fname))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_filename: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_filename: out of memory - unable to construct string from UTF characters"); } done: @@ -1392,7 +1392,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix H5_LIBRARY_ERROR(ENVONLY); if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t) prefix_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_prefix: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_prefix: memory allocation failed"); if (H5Pget_virtual_prefix((hid_t)dapl_id, (char *)pre, (size_t) prefix_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1400,7 +1400,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_prefix: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_prefix: out of memory - unable to construct string from UTF characters"); } done: diff --git a/java/src/jni/h5pDXPLImp.c b/java/src/jni/h5pDXPLImp.c index 323fa8c..12e3367 100644 --- a/java/src/jni/h5pDXPLImp.c +++ b/java/src/jni/h5pDXPLImp.c @@ -310,7 +310,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1data_1transform H5_LIBRARY_ERROR(ENVONLY); if (NULL == (express = (char *) HDmalloc(sizeof(char) * (size_t)express_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_data_transform: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_data_transform: memory allocation failed"); if (H5Pget_data_transform((hid_t)plist_id, express, (size_t)express_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -318,7 +318,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1data_1transform if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, express))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_data_transform: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_data_transform: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, expression, 0, str); diff --git a/java/src/jni/h5pFAPLImp.c b/java/src/jni/h5pFAPLImp.c index a627e65..c9844b7 100644 --- a/java/src/jni/h5pFAPLImp.c +++ b/java/src/jni/h5pFAPLImp.c @@ -308,7 +308,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family } if (NULL == (sa = (hsize_t *) HDmalloc((size_t) rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_family: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_family: memory allocation failed"); PIN_LONG_ARRAY(ENVONLY, memb_plist, plistArray, &isCopy, "H5Pget_family: plistArray not pinned"); @@ -398,7 +398,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1hdfs if (NULL != fa.namenode_name) { if (NULL == (j_namenode_name = ENVPTR->NewStringUTF(ENVONLY, fa.namenode_name))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_hdfs: out of memory - can't create namenode_name string"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_hdfs: out of memory - can't create namenode_name string"); } } args[0].l = j_namenode_name; @@ -408,7 +408,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1hdfs if (NULL != fa.user_name) { if (NULL == (j_user_name = ENVPTR->NewStringUTF(ENVONLY, fa.user_name))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_hdfs: out of memory - can't create user_name string"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_hdfs: out of memory - can't create user_name string"); } } args[2].l = j_user_name; @@ -416,7 +416,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1hdfs if (NULL != fa.kerberos_ticket_cache) { if (NULL == (j_kerb_cache_path = ENVPTR->NewStringUTF(ENVONLY, fa.kerberos_ticket_cache))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_hdfs: out of memory - can't create kerberos_ticket_cache string"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_hdfs: out of memory - can't create kerberos_ticket_cache string"); } } args[3].l = j_kerb_cache_path; @@ -651,7 +651,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi str_len = HDstrlen(utf8); if (NULL == (member_name[i] = (char *) HDmalloc(str_len + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_fapl_multi: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pset_fapl_multi: memory allocation failed"); HDstrncpy(member_name[i], utf8, str_len + 1); (member_name[i])[str_len] = '\0'; @@ -678,7 +678,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi if (NULL == (rstring = ENVPTR->NewStringUTF(ENVONLY, member_name[i]))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_fapl_multi: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pset_fapl_multi: out of memory - unable to construct string from UTF characters"); } if (NULL == (o = ENVPTR->GetObjectArrayElement(ENVONLY, memb_name, (jsize) i))) { @@ -750,7 +750,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi PIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, &isCopy, "H5Pget_fapl_multi: memb_addr not pinned"); if (memb_name) if (NULL == (mName = (char **) HDcalloc(H5FD_MEM_NTYPES, sizeof(*mName)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_multi: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_multi: memory allocation failed"); if ((status = H5Pget_fapl_multi((hid_t)tid, (H5FD_mem_t *)themapArray, (hid_t *)thefaplArray, mName, (haddr_t *)theaddrArray, (hbool_t *)&relax)) < 0) @@ -761,7 +761,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi if (mName[i]) { if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, mName[i]))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_multi: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_multi: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, memb_name, (jsize) i, (jobject)str); @@ -823,7 +823,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1ros3 if (NULL != fa.aws_region) { if (NULL == (j_aws = ENVPTR->NewStringUTF(ENVONLY, fa.aws_region))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create aws_region string"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create aws_region string"); } } args[0].l = j_aws; @@ -831,7 +831,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1ros3 if (NULL != fa.secret_id) { if (NULL == (j_id = ENVPTR->NewStringUTF(ENVONLY, fa.secret_id))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create secret_id string"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create secret_id string"); } } args[1].l = j_id; @@ -839,7 +839,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1ros3 if (NULL != fa.secret_key) { if (NULL == (j_key = ENVPTR->NewStringUTF(ENVONLY, fa.secret_key))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create secret_key string"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create secret_key string"); } } args[2].l = j_key; @@ -1688,7 +1688,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config if (NULL != cacheinfo.trace_file_name) { if (NULL == (j_str = ENVPTR->NewStringUTF(ENVONLY, cacheinfo.trace_file_name))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_config: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_mdc_config: out of memory - unable to construct string from UTF characters"); } } @@ -1802,7 +1802,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options location_size++; /* add extra space for the null terminator */ if (NULL == (lname = (char *) HDmalloc(sizeof(char) * location_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_log_options: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_mdc_log_options: memory allocation failed"); if ((status = H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, lname, &location_size, &start_on_access)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1810,7 +1810,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, lname))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_log_options: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_mdc_log_options: out of memory - unable to construct string from UTF characters"); } mdc_log_options_ptr[0] = (jboolean)is_enabled; diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c index 726e08c..9e5b004 100644 --- a/java/src/jni/h5pImp.c +++ b/java/src/jni/h5pImp.c @@ -503,7 +503,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1class_1name if (NULL == (j_str = ENVPTR->NewStringUTF(ENVONLY, c_str))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_class_name: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_class_name: out of memory - unable to construct string from UTF characters"); } done: diff --git a/java/src/jni/h5pLAPLImp.c b/java/src/jni/h5pLAPLImp.c index f2cb80a..754bece 100644 --- a/java/src/jni/h5pLAPLImp.c +++ b/java/src/jni/h5pLAPLImp.c @@ -134,7 +134,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix H5_LIBRARY_ERROR(ENVONLY); if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t) prefix_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_elink_prefix: memory allocation failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_elink_prefix: memory allocation failed"); if (H5Pget_elink_prefix((hid_t)lapl_id, (char *)pre, (size_t) prefix_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -142,7 +142,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_elink_prefix: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_elink_prefix: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, prefix, 0, str); diff --git a/java/src/jni/h5plImp.c b/java/src/jni/h5plImp.c index 90d78fe..b43b532 100644 --- a/java/src/jni/h5plImp.c +++ b/java/src/jni/h5plImp.c @@ -226,7 +226,7 @@ Java_hdf_hdf5lib_H5_H5PLget H5_LIBRARY_ERROR(ENVONLY); if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5PLget: failed to allocate plugin name buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5PLget: failed to allocate plugin name buffer"); if ((H5PLget((unsigned) index, aName, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); diff --git a/java/src/jni/h5rImp.c b/java/src/jni/h5rImp.c index 21ee658..def27f4 100644 --- a/java/src/jni/h5rImp.c +++ b/java/src/jni/h5rImp.c @@ -51,7 +51,7 @@ Java_hdf_hdf5lib_H5_H5Rcreate_1object PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_object: reference name not pinned"); if (NULL == (refBuf = (unsigned char *) HDcalloc((size_t) 1, H5R_REF_BUF_SIZE))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Rcreate_object: failed to allocate reference buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_object: failed to allocate reference buffer"); if ((status = H5Rcreate_object((hid_t)loc_id, refName, (hid_t)aid, (const H5R_ref_t *)refBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -94,7 +94,7 @@ Java_hdf_hdf5lib_H5_H5Rcreate_1region PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_region: reference name not pinned"); if (NULL == (refBuf = (unsigned char *) HDcalloc((size_t) 1, H5R_REF_BUF_SIZE))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Rcreate_region: failed to allocate reference buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_region: failed to allocate reference buffer"); if ((status = H5Rcreate_region((hid_t)loc_id, refName, space_id, (hid_t)aid, (const H5R_ref_t *)refBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -141,7 +141,7 @@ Java_hdf_hdf5lib_H5_H5Rcreate_1attr PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_attr: reference name not pinned"); if (NULL == (refBuf = (unsigned char *) HDcalloc((size_t) 1, H5R_REF_BUF_SIZE))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Rcreate_attr: failed to allocate reference buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_attr: failed to allocate reference buffer"); if ((status = H5Rcreate_attr((hid_t)loc_id, refName, attrName, (hid_t)aid, (const H5R_ref_t *)refBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -315,7 +315,7 @@ Java_hdf_hdf5lib_H5_H5Rcopy PIN_BYTE_ARRAY(ENVONLY, src_ref, src_refBuf, &isCopy, "H5Rcopy: src reference buffer not pinned"); if (NULL == (dst_refBuf = (unsigned char *) HDcalloc((size_t) 1, H5R_REF_BUF_SIZE))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Rcreate_attr: failed to allocate dst reference buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_attr: failed to allocate dst reference buffer"); if ((status = H5Rcopy((const H5R_ref_t *)src_refBuf, (const H5R_ref_t *)dst_refBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -505,7 +505,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1file_1name H5_LIBRARY_ERROR(ENVONLY); if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Rget_file_name: malloc failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_file_name: malloc failed"); if ((check_size = H5Rget_file_name((const H5R_ref_t *)refBuf, namePtr, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -551,7 +551,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1obj_1name H5_LIBRARY_ERROR(ENVONLY); if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Rget_obj_name: malloc failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_obj_name: malloc failed"); if ((check_size = H5Rget_obj_name((const H5R_ref_t *)refBuf, (hid_t)rapl_id, namePtr, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -597,7 +597,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1attr_1name H5_LIBRARY_ERROR(ENVONLY); if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Rget_attr_name: malloc failed"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_attr_name: malloc failed"); if ((check_size = H5Rget_attr_name((const H5R_ref_t *)refBuf, namePtr, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -645,9 +645,9 @@ Java_hdf_hdf5lib_H5_H5Rcreate } if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference input array length != H5R_OBJ_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference input array length != H5R_OBJ_REF_BUF_SIZE"); else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE"); else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type)) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: unknown reference type"); @@ -692,9 +692,9 @@ Java_hdf_hdf5lib_H5__1H5Rdereference } if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: reference input array length != H5R_OBJ_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: reference input array length != H5R_OBJ_REF_BUF_SIZE"); else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE"); else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type)) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: unknown reference type"); @@ -854,16 +854,16 @@ Java_hdf_hdf5lib_H5_H5Rget_1name } if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference input array length != H5R_OBJ_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference input array length != H5R_OBJ_REF_BUF_SIZE"); else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE"); else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type)) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: unknown reference type"); PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_name: reference buffer not pinned"); if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer"); if ((ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, aName, (size_t)size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); diff --git a/java/src/jni/h5sImp.c b/java/src/jni/h5sImp.c index c703e90..74866ed 100644 --- a/java/src/jni/h5sImp.c +++ b/java/src/jni/h5sImp.c @@ -98,7 +98,7 @@ Java_hdf_hdf5lib_H5__1H5Screate_1simple PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Screate_simple: dims not pinned"); if (NULL == (sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Screate_simple: failed to allocate dims buffer") + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Screate_simple: failed to allocate dims buffer"); jlp = (jlong *) dimsP; for (i = 0; i < rank; i++) { @@ -115,7 +115,7 @@ Java_hdf_hdf5lib_H5__1H5Screate_1simple PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Screate_simple: maxdims not pinned"); if (NULL == (msa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Screate_simple: failed to allocate maxdims buffer") + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Screate_simple: failed to allocate maxdims buffer"); jlp = (jlong *) maxdimsP; for (i = 0; i < mrank; i++) { @@ -194,7 +194,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements PIN_LONG_ARRAY(ENVONLY, coords, P, &isCopy, "H5Sselect_elements: coords not pinned"); if (NULL == (sa = (hssize_t *) HDmalloc( (size_t)num_elemn * 2 * sizeof(hssize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer"); for (i = 0; i < (num_elemn * 2); i++) { sa[i] = P[i]; @@ -247,7 +247,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements nlongs = (int)((size_t)size / sizeof(jlong)); if (NULL == (lp = (hsize_t *) HDmalloc((size_t)nlongs * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer"); jlp = (jlong *) P; llp = lp; @@ -444,7 +444,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims } if (NULL == (sa = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate dimension buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate dimension buffer"); } if (NULL == maxdims) { @@ -462,10 +462,10 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims if (rank < 0) rank = mrank; else if (mrank != rank) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims rank not same as dims"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims rank not same as dims"); if (NULL == (msa = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate maximum dimension buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate maximum dimension buffer"); } if ((status = H5Sget_simple_extent_dims(space_id, (hsize_t *)sa, (hsize_t *)msa)) < 0) @@ -564,7 +564,7 @@ Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Sset_extent_simple: dims not pinned"); if (NULL == (sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate dimension buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate dimension buffer"); jlp = (jlong *) dimsP; for (i = 0; i < rank; i++) { @@ -581,7 +581,7 @@ Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Sset_extent_simple: maxdims not pinned"); if (NULL == (msa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate maximum dimension buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate maximum dimension buffer"); jlp = (jlong *) maxdimsP; for (i = 0; i < rank; i++) { @@ -660,7 +660,7 @@ Java_hdf_hdf5lib_H5_H5Soffset_1simple rank = (size_t) i / sizeof(jlong); if (NULL == (sa = lp = (hssize_t *) HDmalloc((size_t)rank * sizeof(hssize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Soffset_simple: failed to allocate offset buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Soffset_simple: failed to allocate offset buffer"); jlp = (jlong *) P; for (i = 0; (size_t) i < rank; i++) { @@ -788,7 +788,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_hyperslab: start not pinned"); if (NULL == (strt = lp = (hsize_t *) HDmalloc((size_t)start_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate start buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate start buffer"); jlp = (jlong *) startP; for (i = 0; i < start_rank; i++) { @@ -800,7 +800,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sselect_hyperslab: count not pinned"); if (NULL == (cnt = lp = (hsize_t *) HDmalloc((size_t)count_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate count buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate count buffer"); jlp = (jlong *) countP; for (i = 0; i < count_rank; i++) { @@ -825,7 +825,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sselect_hyperslab: stride not pinned"); if (NULL == (strd = lp = (hsize_t *) HDmalloc((size_t)stride_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate stride buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate stride buffer"); jlp = (jlong *) strideP; for (i = 0; i < stride_rank; i++) { @@ -851,7 +851,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sselect_hyperslab: block not pinned"); if (NULL == (blk = lp = (hsize_t *) HDmalloc((size_t)block_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate block buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate block buffer"); jlp = (jlong *) blockP; for (i = 0; i < block_rank; i++) { @@ -988,7 +988,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist buf_size = (size_t) numblocks * (size_t) 2 * (size_t) rank * sizeof(hsize_t); if (NULL == (ba = (hsize_t *) HDmalloc(buf_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: failed to allocate block list buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: failed to allocate block list buffer"); if ((status = H5Sget_select_hyper_blocklist((hid_t)spaceid, (hsize_t) startblock, (hsize_t) numblocks, (hsize_t *)ba)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1044,7 +1044,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_elem_pointlist: buffer not pinned"); if (NULL == (ba = (hsize_t *) HDmalloc(((size_t)numpoints * (size_t)rank) * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: failed to allocate point list buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: failed to allocate point list buffer"); if ((status = H5Sget_select_elem_pointlist((hid_t)spaceid, (hsize_t)startpoint, (hsize_t)numpoints, (hsize_t *)ba)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1094,12 +1094,12 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds } if (NULL == (strt = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate start buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate start buffer"); PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sget_select_bounds: end not pinned"); if (NULL == (en = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate end buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate end buffer"); if ((status = H5Sget_select_bounds((hid_t) spaceid, (hsize_t *) strt, (hsize_t *) en)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1148,7 +1148,7 @@ Java_hdf_hdf5lib_H5_H5Sencode H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sencode: buf_size = 0"); if (NULL == (bufPtr = (unsigned char *) HDcalloc((size_t) 1, buf_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sencode: failed to allocate encoding buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sencode: failed to allocate encoding buffer"); if ((status = H5Sencode2((hid_t) obj_id, bufPtr, &buf_size, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1258,7 +1258,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sget_regular_hyperslab: start not pinned"); if (NULL == (strt = (hsize_t *) HDmalloc((size_t)start_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate start buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate start buffer"); } if (NULL == stride) { @@ -1277,7 +1277,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sget_regular_hyperslab: stride not pinned"); if (NULL == (strd = (hsize_t *) HDmalloc((size_t)stride_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate stride buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate stride buffer"); } if (NULL == count) { @@ -1296,7 +1296,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sget_regular_hyperslab: count not pinned"); if (NULL == (cnt = (hsize_t *) HDmalloc((size_t)count_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate count buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate count buffer"); } if (NULL == block) { @@ -1315,7 +1315,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sget_regular_hyperslab: block not pinned"); if (NULL == (blk = (hsize_t *) HDmalloc((size_t)block_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate block buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate block buffer"); } if ((status = H5Sget_regular_hyperslab(space_id, (hsize_t *) strt, (hsize_t *) strd, (hsize_t *) cnt, (hsize_t *) blk)) < 0) diff --git a/java/src/jni/h5tImp.c b/java/src/jni/h5tImp.c index 1adff3c..1cbf1a5 100644 --- a/java/src/jni/h5tImp.c +++ b/java/src/jni/h5tImp.c @@ -1239,7 +1239,7 @@ Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof_int: name size < 0"); if (NULL == (nameP = (char *) HDmalloc(sizeof(char) * (size_t)size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tenum_nameof_int: failed to allocate name buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tenum_nameof_int: failed to allocate name buffer"); PIN_INT_ARRAY(ENVONLY, value, intP, &isCopy, "H5Tenum_nameof_int: value not pinned"); @@ -1285,7 +1285,7 @@ Java_hdf_hdf5lib_H5_H5Tenum_1nameof H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof: value is NULL"); if (NULL == (nameP = (char *) HDmalloc(sizeof(char) * (size_t)size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tenum_nameof: failed to allocate name buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tenum_nameof: failed to allocate name buffer"); PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Tenum_nameof: value not pinned"); @@ -1485,7 +1485,7 @@ Java_hdf_hdf5lib_H5_H5Tget_1array_1dims } if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tget_array_dims: failed to allocate dimension buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tget_array_dims: failed to allocate dimension buffer"); if ((ndims = H5Tget_array_dims2((hid_t)type_id, cdims)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1626,10 +1626,10 @@ Java_hdf_hdf5lib_H5__1H5Tarray_1create2 } if (dlen != rank) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_create: dimension array length != array rank"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_create: dimension array length != array rank"); if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_create: failed to allocate dimension buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tarray_create: failed to allocate dimension buffer"); for (i = 0; i < (size_t) dlen; i++) { cdims[i] = (hsize_t)dimsP[i]; @@ -1676,7 +1676,7 @@ Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2 } if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_get_dims2: failed to allocate dimension buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tarray_get_dims2: failed to allocate dimension buffer"); if ((ndims = H5Tget_array_dims2((hid_t)type_id, (hsize_t*)cdims)) < 0) H5_LIBRARY_ERROR(ENVONLY); diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c index 5c82edc..55f7571 100644 --- a/java/src/jni/h5util.c +++ b/java/src/jni/h5util.c @@ -515,7 +515,7 @@ h5str_convert total_elmts *= dims[i]; if (NULL == (cptr = (char *) HDcalloc((size_t)total_elmts, baseTypeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to allocate array buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_convert: failed to allocate array buffer"); for (i = 0; i < total_elmts; i++) { if (!(h5str_convert(ENVONLY, &this_str, container, mtid, out_buf, i * baseTypeSize))) { @@ -556,7 +556,7 @@ h5str_convert H5_LIBRARY_ERROR(ENVONLY); if (NULL == (vl_buf->p = HDmalloc(baseTypeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to allocate vlen buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_convert: failed to allocate vlen buffer"); vl_buf->len = 1; /* Skip whitespace and vlen indicators */ @@ -570,7 +570,7 @@ h5str_convert char *tmp_realloc; if (NULL == (tmp_realloc = (char *) HDrealloc(vl_buf->p, vl_buf->len * 2 * baseTypeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to reallocate vlen buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_convert: failed to reallocate vlen buffer"); vl_buf->len *= 2; vl_buf->p = tmp_realloc; } @@ -733,9 +733,9 @@ h5str_sprintf /* Build default formats for long long types */ if (!fmt_llong[0]) { if (HDsnprintf(fmt_llong, sizeof(fmt_llong), "%%%sd", H5_PRINTF_LL_WIDTH) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); if (HDsnprintf(fmt_ullong, sizeof(fmt_ullong), "%%%su", H5_PRINTF_LL_WIDTH) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } /* end if */ switch (tclass) { @@ -749,7 +749,7 @@ h5str_sprintf HDmemcpy(&tmp_float, cptr, sizeof(float)); if (NULL == (this_str = (char *) HDmalloc(25))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%g", tmp_float) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -764,7 +764,7 @@ h5str_sprintf HDmemcpy(&tmp_double, cptr, sizeof(double)); if (NULL == (this_str = (char *) HDmalloc(25))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%g", tmp_double) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -779,7 +779,7 @@ h5str_sprintf HDmemcpy(&tmp_ldouble, cptr, sizeof(long double)); if (NULL == (this_str = (char *) HDmalloc(27))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%Lf", tmp_ldouble) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -819,13 +819,13 @@ h5str_sprintf /* Check for NULL pointer for string */ if (!tmp_str) { if (NULL == (this_str = (char *) HDmalloc(5))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); HDstrncpy(this_str, "NULL", 5); } else { if (typeSize > 0) { if (NULL == (this_str = (char *) HDmalloc(typeSize + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); HDstrncpy(this_str, tmp_str, typeSize); this_str[typeSize] = '\0'; @@ -851,7 +851,7 @@ h5str_sprintf HDmemcpy(&tmp_uchar, cptr, sizeof(unsigned char)); if (NULL == (this_str = (char *) HDmalloc(7))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%hhu", tmp_uchar) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -860,7 +860,7 @@ h5str_sprintf HDmemcpy(&tmp_char, cptr, sizeof(char)); if (NULL == (this_str = (char *) HDmalloc(7))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%hhd", tmp_char) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -878,7 +878,7 @@ h5str_sprintf HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short)); if (NULL == (this_str = (char *) HDmalloc(9))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%hu", tmp_ushort) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -887,7 +887,7 @@ h5str_sprintf HDmemcpy(&tmp_short, cptr, sizeof(short)); if (NULL == (this_str = (char *) HDmalloc(9))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%hd", tmp_short) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -905,7 +905,7 @@ h5str_sprintf HDmemcpy(&tmp_uint, cptr, sizeof(unsigned int)); if (NULL == (this_str = (char *) HDmalloc(14))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%u", tmp_uint) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -914,7 +914,7 @@ h5str_sprintf HDmemcpy(&tmp_int, cptr, sizeof(int)); if (NULL == (this_str = (char *) HDmalloc(14))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%d", tmp_int) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -932,7 +932,7 @@ h5str_sprintf HDmemcpy(&tmp_ulong, cptr, sizeof(unsigned long)); if (NULL == (this_str = (char *) HDmalloc(23))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%lu", tmp_ulong) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -941,7 +941,7 @@ h5str_sprintf HDmemcpy(&tmp_long, cptr, sizeof(long)); if (NULL == (this_str = (char *) HDmalloc(23))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%ld", tmp_long) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -960,7 +960,7 @@ h5str_sprintf HDmemcpy(&tmp_ullong, cptr, sizeof(unsigned long long)); if (NULL == (this_str = (char *) HDmalloc(25))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, fmt_ullong, tmp_ullong) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -969,7 +969,7 @@ h5str_sprintf HDmemcpy(&tmp_llong, cptr, sizeof(long long)); if (NULL == (this_str = (char *) HDmalloc(25))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, fmt_llong, tmp_llong) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); @@ -1034,7 +1034,7 @@ h5str_sprintf size_t i; if (NULL == (this_str = (char *) HDmalloc(4 * (typeSize + 1)))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (1 == typeSize) { if (HDsprintf(this_str, "%#02x", ucptr[0]) < 0) @@ -1069,10 +1069,10 @@ h5str_sprintf case H5R_OBJECT1: { /* Object references -- show the type and OID of the referenced object. */ - H5O_info_t oi; + H5O_info2_t oi; if((obj = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - H5Oget_info2(obj, &oi, H5O_INFO_BASIC); + H5Oget_info3(obj, &oi, H5O_INFO_BASIC); if(H5Oclose(obj) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } @@ -1080,7 +1080,7 @@ h5str_sprintf CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (this_str = (char *) HDmalloc(14))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (HDsprintf(this_str, "%u-", (unsigned) oi.type) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); if (!h5str_append(out_str, this_str)) @@ -1114,10 +1114,19 @@ h5str_sprintf h5str_sprint_reference(ENVONLY, out_str, container, ref_vp); /* Print OID */ - if (NULL == (this_str = (char *) HDmalloc(64))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%lu:"H5_PRINTF_HADDR_FMT" ", oi.fileno, oi.addr) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + { + char *token_str; + + H5Otoken_to_str(tid, &oi.token, &token_str); + + if (NULL == (this_str = (char *) HDmalloc(64 + strlen(token_str) + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (HDsprintf(this_str, "%lu:%s", oi.fileno, token_str) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + + H5free_memory(token_str); + } + } break; @@ -1273,7 +1282,7 @@ h5str_sprintf /* All other types get printed as hexadecimal */ if (NULL == (this_str = (char *) HDmalloc(4 * (typeSize + 1)))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (1 == typeSize) { if (HDsprintf(this_str, "%#02x", ucptr[0]) < 0) @@ -1346,7 +1355,7 @@ h5str_print_region_data_blocks /* Allocate space for the dimension array */ if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate dimension array buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate dimension array buffer"); /* Find the dimensions of each data space from the block coordinates */ for (jndx = 0, numelem = 1; jndx < (size_t) ndims; jndx++) { @@ -1362,15 +1371,15 @@ h5str_print_region_data_blocks H5_LIBRARY_ERROR(ENVONLY); if (NULL == (region_buf = HDmalloc(type_size * (size_t)numelem))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate region buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate region buffer"); /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */ /* 1 2 n 1 2 n */ if (NULL == (start = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate hyperslab start buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate hyperslab start buffer"); if (NULL == (count = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate hyperslab count buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate hyperslab count buffer"); for (blkndx = 0; blkndx < (hsize_t) nblocks; blkndx++) { for (indx = 0; indx < (unsigned) ndims; indx++) { @@ -1445,7 +1454,7 @@ h5str_dump_region_blocks_data alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]); if (alloc_size == (hsize_t)((size_t) alloc_size)) { if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks_data: failed to allocate region block buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_region_blocks_data: failed to allocate region block buffer"); if (H5Sget_select_hyper_blocklist(region, (hsize_t) 0, (hsize_t) nblocks, ptdata) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1505,7 +1514,7 @@ h5str_dump_region_blocks int i; if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: failed to allocate region block buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_region_blocks: failed to allocate region block buffer"); if (H5Sget_select_hyper_blocklist(region, (hsize_t) 0, (hsize_t) nblocks, ptdata) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1590,7 +1599,7 @@ h5str_print_region_data_points /* Allocate space for the dimension array */ if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate dimension array buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate dimension array buffer"); dims1[0] = (hsize_t)npoints; @@ -1602,7 +1611,7 @@ h5str_print_region_data_points H5_LIBRARY_ERROR(ENVONLY); if (NULL == (region_buf = HDmalloc(type_size * (size_t)npoints))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate region buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate region buffer"); if (H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1662,7 +1671,7 @@ h5str_dump_region_points_data alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); if (alloc_size == (hsize_t)((size_t) alloc_size)) { if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points_data: failed to allocate region point data buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_region_points_data: failed to allocate region point data buffer"); if (H5Sget_select_elem_pointlist(region, (hsize_t) 0, (hsize_t) npoints, ptdata) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1725,7 +1734,7 @@ h5str_dump_region_points alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); if (alloc_size == (hsize_t)((size_t) alloc_size)) { if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: failed to allocate region point buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_region_points: failed to allocate region point buffer"); if (H5Sget_select_elem_pointlist(region, (hsize_t) 0, (hsize_t) npoints, ptdata) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -2833,7 +2842,7 @@ h5str_dump_simple_dset if (sm_nbytes > 0) { if (NULL == (sm_buf = (unsigned char *) HDmalloc((size_t)sm_nbytes))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf"); sm_nelmts = sm_nbytes / p_type_nbytes; @@ -2964,7 +2973,7 @@ h5tools_dump_simple_data h5str_new(&buffer, 32 * size); if (!buffer.s) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5tools_dump_simple_data: failed to allocate buffer"); if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 0, 1))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); @@ -3035,7 +3044,7 @@ Java_hdf_hdf5lib_H5_H5AreadComplex } if (NULL == (readBuf = (char *) HDmalloc((size_t)n * size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadComplex: failed to allocate read buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadComplex: failed to allocate read buffer"); if ((status = H5Aread(attr_id, mem_type_id, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -3043,7 +3052,7 @@ Java_hdf_hdf5lib_H5_H5AreadComplex h5str_new(&h5str, 4 * size); if (!h5str.s) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadComplex: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadComplex: failed to allocate string buffer"); for (i = 0; i < (size_t) n; i++) { h5str.s[0] = '\0'; @@ -3104,7 +3113,7 @@ Java_hdf_hdf5lib_H5_H5Acopy total_size = (hsize_t)npoints * (hsize_t)type_size; if (NULL == (buf = (jbyte *) HDmalloc((size_t)total_size * sizeof(jbyte)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Acopy: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Acopy: failed to allocate buffer"); if ((retVal = H5Aread((hid_t)src_id, tid, buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -3151,7 +3160,7 @@ Java_hdf_hdf5lib_H5_H5Dcopy UNUSED(clss); if (!(total_allocated_size = H5Dget_storage_size((hid_t)src_id))) - return 0; // nothing to write + return 0; /* nothing to write */ if ((sid = H5Dget_space((hid_t)src_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -3166,7 +3175,7 @@ Java_hdf_hdf5lib_H5_H5Dcopy total_size = (hsize_t)npoints * (hsize_t)type_size; if (NULL == (buf = (jbyte *) HDmalloc((size_t)total_size * sizeof(jbyte)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dcopy: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dcopy: failed to allocate buffer"); if ((retVal = H5Dread((hid_t)src_id, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -3204,15 +3213,15 @@ done: */ #ifdef __cplusplus - herr_t obj_info_all(hid_t g_id, const char *name, const H5L_info_t *linfo, void *op_data); - herr_t obj_info_max(hid_t g_id, const char *name, const H5L_info_t *linfo, void *op_data); - int H5Gget_obj_info_max(hid_t, char **, int *, int *, unsigned long *, long); - int H5Gget_obj_info_full( hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, unsigned long *objno, int indexType, int indexOrder); + herr_t obj_info_all(hid_t g_id, const char *name, const H5L_info2_t *linfo, void *op_data); + herr_t obj_info_max(hid_t g_id, const char *name, const H5L_info2_t *linfo, void *op_data); + int H5Gget_obj_info_max(hid_t, char **, int *, int *, H5O_token_t *, long); + int H5Gget_obj_info_full( hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, H5O_token_t *obj_token, int indexType, int indexOrder); #else - static herr_t obj_info_all(hid_t g_id, const char *name, const H5L_info_t *linfo, void *op_data); - static herr_t obj_info_max(hid_t g_id, const char *name, const H5L_info_t *linfo, void *op_data); - static int H5Gget_obj_info_max(hid_t, char **, int *, int *, unsigned long *, long); - static int H5Gget_obj_info_full( hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, unsigned long *objno, int indexType, int indexOrder); + static herr_t obj_info_all(hid_t g_id, const char *name, const H5L_info2_t *linfo, void *op_data); + static herr_t obj_info_max(hid_t g_id, const char *name, const H5L_info2_t *linfo, void *op_data); + static int H5Gget_obj_info_max(hid_t, char **, int *, int *, H5O_token_t *, long); + static int H5Gget_obj_info_full( hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, H5O_token_t *obj_token, int indexType, int indexOrder); #endif typedef struct info_all @@ -3220,7 +3229,7 @@ typedef struct info_all char **objname; int *otype; int *ltype; - unsigned long *objno; + H5O_token_t *obj_token; unsigned long *fno; unsigned long idxnum; int count; @@ -3241,17 +3250,17 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full (JNIEnv *env, jclass clss, jlong loc_id, jstring group_name, jobjectArray objName, jintArray oType, jintArray lType, jlongArray fNo, - jlongArray oRef, jint n, jint indx_type, jint indx_order) + jobjectArray oToken, jint n, jint indx_type, jint indx_order) { - unsigned long *refs = NULL; unsigned long *fnos = NULL; + H5O_token_t *tokens = NULL; const char *gName = NULL; char **oName = NULL; jboolean isCopy; jstring str; + jobject token; jint *otarr = NULL; jint *ltarr = NULL; - jlong *refP = NULL; jlong *fnoP = NULL; hid_t gid = (hid_t)loc_id; int i; @@ -3265,24 +3274,23 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: oType is NULL"); if (NULL == lType) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: lType is NULL"); - if (NULL == oRef) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: oRef is NULL"); + if (NULL == oToken) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: oToken is NULL"); if (NULL == fNo) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: fNo is NULL"); PIN_INT_ARRAY(ENVONLY, oType, otarr, &isCopy, "H5Gget_obj_info_full: oType not pinned"); PIN_INT_ARRAY(ENVONLY, lType, ltarr, &isCopy, "H5Gget_obj_info_full: lType not pinned"); - PIN_LONG_ARRAY(ENVONLY, oRef, refP, &isCopy, "H5Gget_obj_info_full: oRef not pinned"); PIN_LONG_ARRAY(ENVONLY, fNo, fnoP, &isCopy, "H5Gget_obj_info_full: fNo not pinned"); if (NULL == (oName = (char **) HDcalloc((size_t)n, sizeof(*oName)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for object name"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for object name"); - if (NULL == (refs = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for ref. info"); + if (NULL == (tokens = (H5O_token_t *) HDcalloc((size_t)n, sizeof(H5O_token_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for object tokens"); if (NULL == (fnos = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for file number info"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for file number info"); if (group_name) { PIN_JAVA_STRING(ENVONLY, group_name, gName, &isCopy, "H5Gget_obj_info_full: group_name not pinned"); @@ -3291,11 +3299,10 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full H5_LIBRARY_ERROR(ENVONLY); } - if ((ret_val = H5Gget_obj_info_full(gid, oName, (int *)otarr, (int *)ltarr, fnos, refs, indexType, indexOrder)) < 0) + if ((ret_val = H5Gget_obj_info_full(gid, oName, (int *)otarr, (int *)ltarr, fnos, tokens, indexType, indexOrder)) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: retrieval of object info failed"); for (i = 0; i < n; i++) { - refP[i] = (jlong)refs[i]; fnoP[i] = (jlong)fnos[i]; if (oName[i]) { @@ -3307,6 +3314,15 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full ENVPTR->DeleteLocalRef(ENVONLY, str); } /* end if */ + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &tokens[i], TRUE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->SetObjectArrayElement(ENVONLY, oToken, i, token); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->DeleteLocalRef(ENVONLY, token); } done: @@ -3316,14 +3332,12 @@ done: } if (fnos) HDfree(fnos); - if (refs) - HDfree(refs); + if (tokens) + HDfree(tokens); if (oName) h5str_array_free(oName, (size_t)n); if (fnoP) UNPIN_LONG_ARRAY(ENVONLY, fNo, fnoP, (ret_val < 0) ? JNI_ABORT : 0); - if (refP) - UNPIN_LONG_ARRAY(ENVONLY, oRef, refP, (ret_val < 0) ? JNI_ABORT : 0); if (ltarr) UNPIN_INT_ARRAY(ENVONLY, lType, ltarr, (ret_val < 0) ? JNI_ABORT : 0); if (otarr) @@ -3345,17 +3359,17 @@ done: JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max (JNIEnv *env, jclass clss, jlong loc_id, jobjectArray objName, - jintArray oType, jintArray lType, jlongArray oRef, jlong maxnum, jint n) + jintArray oType, jintArray lType, jobjectArray oToken, jlong maxnum, jint n) { - unsigned long *refs = NULL; - jboolean isCopy; - jstring str; - jlong *refP = NULL; - char **oName = NULL; - jint *otarr = NULL; - jint *ltarr = NULL; - int i; - herr_t ret_val = FAIL; + H5O_token_t *tokens = NULL; + jboolean isCopy; + jstring str; + jobject token; + char **oName = NULL; + jint *otarr = NULL; + jint *ltarr = NULL; + int i; + herr_t ret_val = FAIL; UNUSED(clss); @@ -3363,25 +3377,22 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: oType is NULL"); if (NULL == lType) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: lType is NULL"); - if (NULL == oRef) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: oRef is NULL"); + if (NULL == oToken) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: oToken is NULL"); PIN_INT_ARRAY(ENVONLY, oType, otarr, &isCopy, "H5Gget_obj_info_max: oType not pinned"); PIN_INT_ARRAY(ENVONLY, lType, ltarr, &isCopy, "H5Gget_obj_info_max: lType not pinned"); - PIN_LONG_ARRAY(ENVONLY, oRef, refP, &isCopy, "H5Gget_obj_info_max: oRef not pinned"); if (NULL == (oName = (char **) HDcalloc((size_t)n, sizeof(*oName)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for object name"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for object name"); - if (NULL == (refs = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for ref. info"); + if (NULL == (tokens = (H5O_token_t *) HDcalloc((size_t)n, sizeof(H5O_token_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for object tokens"); - if ((ret_val = H5Gget_obj_info_max((hid_t)loc_id, oName, (int *)otarr, (int *)ltarr, refs, maxnum)) < 0) + if ((ret_val = H5Gget_obj_info_max((hid_t)loc_id, oName, (int *)otarr, (int *)ltarr, tokens, maxnum)) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: retrieval of object info failed"); for (i = 0; i < n; i++) { - refP[i] = (jlong) refs[i]; - if (oName[i]) { if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, oName[i]))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); @@ -3391,15 +3402,22 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max ENVPTR->DeleteLocalRef(ENVONLY, str); } + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &tokens[i], TRUE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->SetObjectArrayElement(ENVONLY, oToken, i, token); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->DeleteLocalRef(ENVONLY, token); } /* end for */ done: - if (refs) - HDfree(refs); + if (tokens) + HDfree(tokens); if (oName) h5str_array_free(oName, (size_t)n); - if (refP) - UNPIN_LONG_ARRAY(ENVONLY, oRef, refP, (ret_val < 0) ? JNI_ABORT : 0); if (ltarr) UNPIN_INT_ARRAY(ENVONLY, lType, ltarr, (ret_val < 0) ? JNI_ABORT : 0); if (otarr) @@ -3410,7 +3428,7 @@ done: int H5Gget_obj_info_full - (hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, unsigned long *objno, int indexType, int indexOrder) + (hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, H5O_token_t *obj_token, int indexType, int indexOrder) { info_all_t info; @@ -3419,10 +3437,10 @@ H5Gget_obj_info_full info.ltype = ltype; info.idxnum = 0; info.fno = fno; - info.objno = objno; + info.obj_token = obj_token; info.count = 0; - if (H5Literate(loc_id, (H5_index_t)indexType, (H5_iter_order_t)indexOrder, NULL, obj_info_all, (void *)&info) < 0) { + if (H5Literate2(loc_id, (H5_index_t)indexType, (H5_iter_order_t)indexOrder, NULL, obj_info_all, (void *)&info) < 0) { /* * Reset info stats; most importantly, reset the count. */ @@ -3431,11 +3449,11 @@ H5Gget_obj_info_full info.ltype = ltype; info.idxnum = 0; info.fno = fno; - info.objno = objno; + info.obj_token = obj_token; info.count = 0; /* Iteration failed, try normal alphabetical order */ - if (H5Literate(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, obj_info_all, (void *)&info) < 0) + if (H5Literate2(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, obj_info_all, (void *)&info) < 0) return -1; } @@ -3444,7 +3462,7 @@ H5Gget_obj_info_full int H5Gget_obj_info_max - (hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *objno, long maxnum) + (hid_t loc_id, char **objname, int *otype, int *ltype, H5O_token_t *obj_token, long maxnum) { info_all_t info; @@ -3452,10 +3470,10 @@ H5Gget_obj_info_max info.otype = otype; info.ltype = ltype; info.idxnum = (unsigned long)maxnum; - info.objno = objno; + info.obj_token = obj_token; info.count = 0; - if (H5Lvisit(loc_id, H5_INDEX_NAME, H5_ITER_NATIVE, obj_info_max, (void *)&info) < 0) + if (H5Lvisit2(loc_id, H5_INDEX_NAME, H5_ITER_NATIVE, obj_info_max, (void *)&info) < 0) return -1; return info.count; @@ -3463,16 +3481,16 @@ H5Gget_obj_info_max herr_t obj_info_all - (hid_t loc_id, const char *name, const H5L_info_t *info, void *op_data) + (hid_t loc_id, const char *name, const H5L_info2_t *info, void *op_data) { - info_all_t *datainfo = (info_all_t *)op_data; - H5O_info_t object_info; - htri_t object_exists; - size_t str_len; + info_all_t *datainfo = (info_all_t *)op_data; + H5O_info2_t object_info; + htri_t object_exists; + size_t str_len; datainfo->otype[datainfo->count] = -1; datainfo->ltype[datainfo->count] = -1; - datainfo->objno[datainfo->count] = (unsigned long)-1; + datainfo->obj_token[datainfo->count] = H5O_TOKEN_UNDEF; str_len = HDstrlen(name); if (NULL == (datainfo->objname[datainfo->count] = (char *) HDmalloc(str_len + 1))) @@ -3485,21 +3503,15 @@ obj_info_all goto done; if (object_exists) { - if (H5Oget_info_by_name2(loc_id, name, &object_info, H5O_INFO_ALL, H5P_DEFAULT) < 0) + if (H5Oget_info_by_name3(loc_id, name, &object_info, H5O_INFO_ALL, H5P_DEFAULT) < 0) goto done; datainfo->otype[datainfo->count] = object_info.type; datainfo->ltype[datainfo->count] = info->type; datainfo->fno[datainfo->count] = object_info.fileno; - datainfo->objno[datainfo->count] = (unsigned long)object_info.addr; - } - /* - if (info->type == H5L_TYPE_HARD) - datainfo->objno[datainfo->count] = (unsigned long)info->u.address; - else - datainfo->objno[datainfo->count] = info->u.val_size; - */ + HDmemcpy(&datainfo->obj_token[datainfo->count], &object_info.token, sizeof(object_info.token)); + } done: datainfo->count++; @@ -3509,16 +3521,16 @@ done: herr_t obj_info_max - (hid_t loc_id, const char *name, const H5L_info_t *info, void *op_data) + (hid_t loc_id, const char *name, const H5L_info2_t *info, void *op_data) { - info_all_t *datainfo = (info_all_t *)op_data; - H5O_info_t object_info; - size_t str_len; + info_all_t *datainfo = (info_all_t *)op_data; + H5O_info2_t object_info; + size_t str_len; datainfo->otype[datainfo->count] = -1; datainfo->ltype[datainfo->count] = -1; datainfo->objname[datainfo->count] = NULL; - datainfo->objno[datainfo->count] = (unsigned long)-1; + datainfo->obj_token[datainfo->count] = H5O_TOKEN_UNDEF; /* This will be freed by h5str_array_free(oName, n) */ str_len = HDstrlen(name); @@ -3528,16 +3540,13 @@ obj_info_max HDstrncpy(datainfo->objname[datainfo->count], name, str_len); (datainfo->objname[datainfo->count])[str_len] = '\0'; - if (H5Oget_info2(loc_id, &object_info, H5O_INFO_ALL) < 0) + if (H5Oget_info3(loc_id, &object_info, H5O_INFO_ALL) < 0) goto done; datainfo->otype[datainfo->count] = object_info.type; datainfo->ltype[datainfo->count] = info->type; - if (info->type == H5L_TYPE_HARD) - datainfo->objno[datainfo->count] = (unsigned long)info->u.address; - else - datainfo->objno[datainfo->count] = info->u.val_size; + HDmemcpy(&datainfo->obj_token[datainfo->count], &object_info.token, sizeof(object_info.token)); done: datainfo->count++; diff --git a/java/src/jni/h5util.h b/java/src/jni/h5util.h index c26cd5d..51b6594 100644 --- a/java/src/jni/h5util.h +++ b/java/src/jni/h5util.h @@ -96,7 +96,7 @@ Java_hdf_hdf5lib_H5_H5Dcopy */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full - (JNIEnv*, jclass, jlong, jstring, jobjectArray, jintArray, jintArray, jlongArray, jlongArray, jint, jint, jint); + (JNIEnv*, jclass, jlong, jstring, jobjectArray, jintArray, jintArray, jlongArray, jobjectArray, jint, jint, jint); /* * Class: hdf_hdf5lib_H5 diff --git a/java/src/jni/h5vlImp.c b/java/src/jni/h5vlImp.c index 92e456e..0fee343 100644 --- a/java/src/jni/h5vlImp.c +++ b/java/src/jni/h5vlImp.c @@ -110,10 +110,30 @@ done: /* * Class: hdf_hdf5lib_H5 * Method: H5VLget_connector_id - * Signature: (Ljava/lang/String;)J + * Signature: (J)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5VLget_1connector_1id + (JNIEnv *env, jclass clss, jlong obj_id) +{ + hid_t status = H5I_INVALID_HID; + + UNUSED(clss); + + if ((status = H5VLget_connector_id((hid_t)obj_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + return (jlong)status; +} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLget_connector_id_by_name + * Signature: (Ljava/lang/String;)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5VLget_1connector_1id_1by_1name (JNIEnv *env, jclass clss, jobject connector_name) { const char *volName = NULL; @@ -122,11 +142,11 @@ Java_hdf_hdf5lib_H5_H5VLget_1connector_1id UNUSED(clss); if (NULL == connector_name) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5VLget_connector_id: VOL connector name is NULL"); + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5VLget_connector_id_by_name: VOL connector name is NULL"); - PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLget_connector_id: VOL connector name not pinned"); + PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLget_connector_id_by_name: VOL connector name not pinned"); - if ((status = H5VLget_connector_id(volName)) < 0) + if ((status = H5VLget_connector_id_by_name(volName)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -134,7 +154,7 @@ done: UNPIN_JAVA_STRING(ENVONLY, connector_name, volName); return (jlong)status; -} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id */ +} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id_1by_1name */ /* * Class: hdf_hdf5lib_H5 @@ -158,7 +178,7 @@ Java_hdf_hdf5lib_H5_H5VLget_1connector_1name if (buf_size > 0) { if (NULL == (volName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5VLget_connector_name: failed to allocated VOL connector name buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5VLget_connector_name: failed to allocated VOL connector name buffer"); if ((status = H5VLget_connector_name((hid_t)object_id, volName, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); diff --git a/java/src/jni/h5vlImp.h b/java/src/jni/h5vlImp.h index 207efa5..6dd7529 100644 --- a/java/src/jni/h5vlImp.h +++ b/java/src/jni/h5vlImp.h @@ -50,10 +50,19 @@ Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered /* * Class: hdf_hdf5lib_H5 * Method: H5VLget_connector_id - * Signature: (Ljava/lang/String;)J + * Signature: (J)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5VLget_1connector_1id + (JNIEnv *, jclass, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLget_connector_id_by_name + * Signature: (Ljava/lang/String;)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5VLget_1connector_1id_1by_1name (JNIEnv *, jclass, jobject); /* diff --git a/java/src/jni/nativeData.c b/java/src/jni/nativeData.c index ad01b01..3c3d3d5 100644 --- a/java/src/jni/nativeData.c +++ b/java/src/jni/nativeData.c @@ -327,7 +327,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B } if ((start < 0) || ((int)(start + (len * (int)sizeof(jint))) > blen)) - H5_JNI_FATAL_ERROR(ENVONLY, "byteToInt: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToInt: start < 0 or len exceeded buffer length"); bp = (char *)barr + start; @@ -379,7 +379,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToShort__II_3B } if ((start < 0) || ((int)(start + (len * (int)sizeof(jshort))) > blen)) - H5_JNI_FATAL_ERROR(ENVONLY, "byteToShort: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToShort: start < 0 or len exceeded buffer length"); bp = (char *)barr + start; @@ -431,7 +431,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToFloat__II_3B } if ((start < 0) || ((int)(start + (len * (int)sizeof(jfloat))) > blen)) - H5_JNI_FATAL_ERROR(ENVONLY, "byteToFloat: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToFloat: start < 0 or len exceeded buffer length"); bp = (char *)barr + start; @@ -483,7 +483,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToLong__II_3B } if ((start < 0) || ((int)(start + (len * (int)sizeof(jlong))) > blen)) - H5_JNI_FATAL_ERROR(ENVONLY, "byteToLong: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToLong: start < 0 or len exceeded buffer length"); bp = (char *)barr + start; @@ -535,7 +535,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToDouble__II_3B } if ((start < 0) || ((int)(start + (len * (int)sizeof(jdouble))) > blen)) - H5_JNI_FATAL_ERROR(ENVONLY, "byteToDouble: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToDouble: start < 0 or len exceeded buffer length"); bp = (char *)barr + start; @@ -593,7 +593,7 @@ Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I } if ((start < 0) || (((start + len)) > ilen)) - H5_JNI_FATAL_ERROR(ENVONLY, "intToByte: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "intToByte: start < 0 or len exceeded buffer length"); ip = iarr + start; @@ -655,7 +655,7 @@ Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S } if ((start < 0) || (((start + len)) > ilen)) - H5_JNI_FATAL_ERROR(ENVONLY, "shortToByte: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "shortToByte: start < 0 or len exceeded buffer length"); ip = sarr + start; @@ -717,7 +717,7 @@ Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F } if ((start < 0) || (((start + len)) > ilen)) - H5_JNI_FATAL_ERROR(ENVONLY, "floatToByte: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "floatToByte: start < 0 or len exceeded buffer length"); ip = farr + start; @@ -779,7 +779,7 @@ Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D } if ((start < 0) || (((start + len)) > ilen)) - H5_JNI_FATAL_ERROR(ENVONLY, "doubleToByte: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "doubleToByte: start < 0 or len exceeded buffer length"); ip = darr + start; @@ -841,7 +841,7 @@ Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J } if ((start < 0) || (((start + len)) > ilen)) - H5_JNI_FATAL_ERROR(ENVONLY, "longToByte: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "longToByte: start < 0 or len exceeded buffer length"); ip = larr + start; diff --git a/java/test/CMakeLists.txt b/java/test/CMakeLists.txt index dfb6e72..de7dc62 100644 --- a/java/test/CMakeLists.txt +++ b/java/test/CMakeLists.txt @@ -105,39 +105,41 @@ endif () get_property (target_name TARGET ${HDF5_JAVA_JNI_LIB_TARGET} PROPERTY OUTPUT_NAME) set (CMD_ARGS "-Dhdf.hdf5lib.H5.loadLibraryName=${target_name}$<$<CONFIG:Debug>:${CMAKE_DEBUG_POSTFIX}>;") -foreach (test_file ${HDF5_JAVA_TEST_SOURCES}) - set (CMAKE_JAVA_CLASSPATH ".") - foreach (CMAKE_INCLUDE_PATH ${CMAKE_JAVA_INCLUDE_PATH}) - set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${CMAKE_INCLUDE_PATH}") +if (HDF5_TEST_JAVA AND HDF5_TEST_SERIAL) + foreach (test_file ${HDF5_JAVA_TEST_SOURCES}) + set (CMAKE_JAVA_CLASSPATH ".") + foreach (CMAKE_INCLUDE_PATH ${CMAKE_JAVA_INCLUDE_PATH}) + set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${CMAKE_INCLUDE_PATH}") + endforeach () + set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${${HDF5_JAVA_TEST_LIB_TARGET}_${test_file}_JAR_FILE}") + + add_test ( + NAME JUnit-${test_file}-clearall-objects + COMMAND ${CMAKE_COMMAND} -E remove + JUnit-${test_file}.out + JUnit-${test_file}.out.err + ) + add_test ( + NAME JUnit-${test_file} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_TESTER=${CMAKE_Java_RUNTIME};${CMAKE_Java_RUNTIME_FLAGS}" + -D "TEST_CLASSPATH:STRING=${CMAKE_JAVA_CLASSPATH}" + -D "TEST_ARGS:STRING=${CMD_ARGS}-ea;org.junit.runner.JUnitCore" + -D "TEST_PROGRAM=test.${test_file}" + -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_OUTPUT_DIRECTORY}" + -D "TEST_FOLDER=${HDF5_BINARY_DIR}/java/test" + -D "TEST_OUTPUT=JUnit-${test_file}.out" +# -D "TEST_LOG_LEVEL=trace" + -D "TEST_EXPECT=0" + -D "SKIP_APPEND=1" + -D "TEST_MASK_ERROR=TRUE" +# -D "TEST_FILTER:STRING=${testfilter}" + -D "TEST_REFERENCE=JUnit-${test_file}.txt" + -P "${HDF_RESOURCES_DIR}/jrunTest.cmake" + ) + set_tests_properties (JUnit-${test_file} PROPERTIES + ENVIRONMENT "HDF5_PLUGIN_PATH=${CMAKE_BINARY_DIR}/testdir2" + DEPENDS "JUnit-${test_file}-clearall-objects" + ) endforeach () - set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${${HDF5_JAVA_TEST_LIB_TARGET}_${test_file}_JAR_FILE}") - - add_test ( - NAME JUnit-${test_file}-clearall-objects - COMMAND ${CMAKE_COMMAND} -E remove - JUnit-${test_file}.out - JUnit-${test_file}.out.err - ) - add_test ( - NAME JUnit-${test_file} - COMMAND "${CMAKE_COMMAND}" - -D "TEST_TESTER=${CMAKE_Java_RUNTIME};${CMAKE_Java_RUNTIME_FLAGS}" - -D "TEST_CLASSPATH:STRING=${CMAKE_JAVA_CLASSPATH}" - -D "TEST_ARGS:STRING=${CMD_ARGS}-ea;org.junit.runner.JUnitCore" - -D "TEST_PROGRAM=test.${test_file}" - -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_OUTPUT_DIRECTORY}" - -D "TEST_FOLDER=${HDF5_BINARY_DIR}/java/test" - -D "TEST_OUTPUT=JUnit-${test_file}.out" -# -D "TEST_LOG_LEVEL=trace" - -D "TEST_EXPECT=0" - -D "SKIP_APPEND=1" - -D "TEST_MASK_ERROR=TRUE" -# -D "TEST_FILTER:STRING=${testfilter}" - -D "TEST_REFERENCE=JUnit-${test_file}.txt" - -P "${HDF_RESOURCES_DIR}/jrunTest.cmake" - ) - set_tests_properties (JUnit-${test_file} PROPERTIES - ENVIRONMENT "HDF5_PLUGIN_PATH=${CMAKE_BINARY_DIR}/testdir2" - DEPENDS "JUnit-${test_file}-clearall-objects" - ) -endforeach () +endif () diff --git a/java/test/TestH5E.java b/java/test/TestH5E.java index fd015c0..6f4f473 100644 --- a/java/test/TestH5E.java +++ b/java/test/TestH5E.java @@ -74,7 +74,6 @@ public class TestH5E { @Test public void testH5Eget_msg_major() { - try { H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } @@ -90,8 +89,17 @@ public class TestH5E { fail("H5.H5Eget_msg(Throwable): " + err); } assertNotNull("H5.H5Eget_msg: " + msg, msg); - assertEquals("H5.H5Eget_msg: ", "File accessibility", msg); assertEquals("H5.H5Eget_msg: ", HDF5Constants.H5E_MAJOR, error_msg_type[0]); + + /* + * If HDF5_VOL_CONNECTOR is set, this might not be the + * native connector and the error string might be different. + * Only check for the specific error message if the native + * connector is being used. + */ + String connector = System.getenv("HDF5_VOL_CONNECTOR"); + if (connector == null) + assertEquals("H5.H5Eget_msg: ", "File accessibility", msg); } catch (Throwable err) { err.printStackTrace(); @@ -116,8 +124,17 @@ public class TestH5E { fail("H5.H5Eget_msg: " + err); } assertNotNull("H5.H5Eget_msg: " + msg, msg); - assertEquals("H5.H5Eget_msg: ", "Unable to open file", msg); assertEquals("H5.H5Eget_msg: ", HDF5Constants.H5E_MINOR, error_msg_type[0]); + + /* + * If HDF5_VOL_CONNECTOR is set, this might not be the + * native connector and the error string might be different. + * Only check for the specific error message if the native + * connector is being used. + */ + String connector = System.getenv("HDF5_VOL_CONNECTOR"); + if (connector == null) + assertEquals("H5.H5Eget_msg: ", "Unable to open file", msg); } catch (Throwable err) { err.printStackTrace(); diff --git a/java/test/TestH5Edefault.java b/java/test/TestH5Edefault.java index 6f968b1..0e55bcc 100644 --- a/java/test/TestH5Edefault.java +++ b/java/test/TestH5Edefault.java @@ -24,6 +24,7 @@ import org.junit.After; import org.junit.Before; import org.junit.Rule; import org.junit.Test; +import org.junit.Ignore; import org.junit.rules.TestName; public class TestH5Edefault { @@ -55,20 +56,29 @@ public class TestH5Edefault { H5.H5Eprint2(-1, null); } - @Test + @Ignore public void testH5Eprint() { - try { - H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - } - try { - H5.H5Eprint2(HDF5Constants.H5E_DEFAULT, null); - } - catch (Throwable err) { - err.printStackTrace(); - fail("H5.H5Eprint: " + err); - } + /* + * If HDF5_VOL_CONNECTOR is set, this might not be the + * native connector and the error stack might be different. + * Only check for the specific error stack if the native + * connector is being used. + */ + String connector = System.getenv("HDF5_VOL_CONNECTOR"); + if (connector == null) { + try { + H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + } + try { + H5.H5Eprint2(HDF5Constants.H5E_DEFAULT, null); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Eprint: " + err); + } + } } @Test @@ -427,20 +437,29 @@ public class TestH5Edefault { H5.H5Eprint2(-1, null); } - @Test + @Ignore public void testH5EprintInt() { - try { - H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - } - try { - H5.H5Eprint2(HDF5Constants.H5E_DEFAULT, null); - } - catch (Throwable err) { - err.printStackTrace(); - fail("H5.H5EprintInt: " + err); - } + /* + * If HDF5_VOL_CONNECTOR is set, this might not be the + * native connector and the error stack might be different. + * Only check for the specific error stack if the native + * connector is being used. + */ + String connector = System.getenv("HDF5_VOL_CONNECTOR"); + if (connector == null) { + try { + H5.H5Fopen("test", HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + } + try { + H5.H5Eprint2(HDF5Constants.H5E_DEFAULT, null); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5EprintInt: " + err); + } + } } @Test diff --git a/java/test/TestH5G.java b/java/test/TestH5G.java index 6c30187..4b6d470 100644 --- a/java/test/TestH5G.java +++ b/java/test/TestH5G.java @@ -24,6 +24,7 @@ import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5G_info_t; +import hdf.hdf5lib.structs.H5O_token_t; import org.junit.After; import org.junit.Before; @@ -286,12 +287,12 @@ public class TestH5G { String objNames[] = new String[(int) info.nlinks]; int objTypes[] = new int[(int) info.nlinks]; int lnkTypes[] = new int[(int) info.nlinks]; - long objRefs[] = new long[(int) info.nlinks]; + H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_all(H5fid, GROUPS[0], objNames, - objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_NAME); + objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); @@ -317,14 +318,14 @@ public class TestH5G { assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: ", info); assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number of links is empty", info.nlinks > 0); String objNames[] = new String[(int) info.nlinks]; - long objRefs[] = new long[(int) info.nlinks]; + H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; int lnkTypes[] = new int[(int) info.nlinks]; int objTypes[] = new int[(int) info.nlinks]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, - objRefs, HDF5Constants.H5_INDEX_NAME); + objTokens, HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); @@ -358,14 +359,14 @@ public class TestH5G { assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: ", info); assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number of links is empty", info.nlinks > 0); String objNames[] = new String[(int) info.nlinks]; - long objRefs[] = new long[(int) info.nlinks]; + H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; int lnkTypes[] = new int[(int) info.nlinks]; int objTypes[] = new int[(int) info.nlinks]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, - objRefs, HDF5Constants.H5_INDEX_NAME); + objTokens, HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); @@ -395,12 +396,12 @@ public class TestH5G { String objNames[] = new String[(int)groups_max_size]; int objTypes[] = new int[(int)groups_max_size]; int lnkTypes[] = new int[(int)groups_max_size]; - long objRefs[] = new long[(int)groups_max_size]; + H5O_token_t objTokens[] = new H5O_token_t[(int)groups_max_size]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, - objRefs, groups_max_size); + objTokens, groups_max_size); } catch (Throwable err) { err.printStackTrace(); @@ -426,12 +427,12 @@ public class TestH5G { String objNames[] = new String[(int)groups_max_size]; int objTypes[] = new int[(int)groups_max_size]; int lnkTypes[] = new int[(int)groups_max_size]; - long objRefs[] = new long[(int)groups_max_size]; + H5O_token_t objTokens[] = new H5O_token_t[(int)groups_max_size]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, - objRefs, groups_max_size); + objTokens, groups_max_size); } catch (Throwable err) { err.printStackTrace(); @@ -471,11 +472,11 @@ public class TestH5G { String objNames[] = new String[(int) info.nlinks]; int objTypes[] = new int[(int) info.nlinks]; int lnkTypes[] = new int[(int) info.nlinks]; - long objRefs[] = new long[(int) info.nlinks]; + H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; try { H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, - objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_CRT_ORDER); + objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_CRT_ORDER); } catch (Throwable err) { err.printStackTrace(); @@ -488,7 +489,7 @@ public class TestH5G { try { H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, - objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_NAME); + objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); diff --git a/java/test/TestH5Giterate.java b/java/test/TestH5Giterate.java index 06c59e7..9514837 100644 --- a/java/test/TestH5Giterate.java +++ b/java/test/TestH5Giterate.java @@ -20,6 +20,7 @@ import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5G_info_t; +import hdf.hdf5lib.structs.H5O_token_t; import org.junit.After; import org.junit.Before; @@ -93,12 +94,12 @@ public class TestH5Giterate { String objNames[] = new String[(int) info.nlinks]; int objTypes[] = new int[(int) info.nlinks]; int lnkTypes[] = new int[(int) info.nlinks]; - long objRefs[] = new long[(int) info.nlinks]; + H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_all(H5fid, "/", objNames, - objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_NAME); + objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); diff --git a/java/test/TestH5Lbasic.java b/java/test/TestH5Lbasic.java index 0a836c1..3bea1ee 100644 --- a/java/test/TestH5Lbasic.java +++ b/java/test/TestH5Lbasic.java @@ -21,8 +21,8 @@ import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5L_iterate_cb; import hdf.hdf5lib.callbacks.H5L_iterate_t; +import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5L_info_t; @@ -119,9 +119,8 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertFalse("H5Lget_info ",link_info==null); + assertFalse("H5Lget_info",link_info==null); assertTrue("H5Lget_info link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); - assertTrue("Link Address ",link_info.address_val_size>0); } @Test(expected = HDF5LibraryException.class) @@ -155,7 +154,7 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("H5Lget_info_by_idx ",link_info==null); + assertFalse("H5Lget_info_by_idx",link_info==null); assertTrue("H5Lget_info_by_idx link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); try { link_info2 = H5.H5Lget_info(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); @@ -164,7 +163,7 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertTrue("Link Address ",link_info.address_val_size==link_info2.address_val_size); + assertTrue("Link Value Size", link_info.val_size == link_info2.val_size); } @Test @@ -178,7 +177,7 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } - assertFalse("H5Lget_info_by_idx ",link_info==null); + assertFalse("H5Lget_info_by_idx",link_info==null); assertTrue("H5Lget_info_by_idx link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); try { link_info2 = H5.H5Lget_info(H5fid, "L1", HDF5Constants.H5P_DEFAULT); @@ -187,7 +186,7 @@ public class TestH5Lbasic { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertTrue("Link Address ",link_info.address_val_size==link_info2.address_val_size); + assertTrue("Link Value Size", link_info.val_size == link_info2.val_size); } @Test(expected = HDF5LibraryException.class) @@ -233,18 +232,18 @@ public class TestH5Lbasic { this.link_type = type; } } - class H5L_iter_data implements H5L_iterate_t { + class H5L_iter_data implements H5L_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - H5L_iterate_t iter_data = new H5L_iter_data(); - class H5L_iter_callback implements H5L_iterate_cb { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data) { + H5L_iterate_opdata_t iter_data = new H5L_iter_data(); + class H5L_iter_callback implements H5L_iterate_t { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; } } - H5L_iterate_cb iter_cb = new H5L_iter_callback(); + H5L_iterate_t iter_cb = new H5L_iter_callback(); try { H5.H5Lvisit(H5fid, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data); } @@ -271,18 +270,18 @@ public class TestH5Lbasic { this.link_type = type; } } - class H5L_iter_data implements H5L_iterate_t { + class H5L_iter_data implements H5L_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - H5L_iterate_t iter_data = new H5L_iter_data(); - class H5L_iter_callback implements H5L_iterate_cb { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data) { + H5L_iterate_opdata_t iter_data = new H5L_iter_data(); + class H5L_iter_callback implements H5L_iterate_t { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; } } - H5L_iterate_cb iter_cb = new H5L_iter_callback(); + H5L_iterate_t iter_cb = new H5L_iter_callback(); try { H5.H5Lvisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); } @@ -305,18 +304,18 @@ public class TestH5Lbasic { this.link_type = type; } } - class H5L_iter_data implements H5L_iterate_t { + class H5L_iter_data implements H5L_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - H5L_iterate_t iter_data = new H5L_iter_data(); - class H5L_iter_callback implements H5L_iterate_cb { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data) { + H5L_iterate_opdata_t iter_data = new H5L_iter_data(); + class H5L_iter_callback implements H5L_iterate_t { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; } } - H5L_iterate_cb iter_cb = new H5L_iter_callback(); + H5L_iterate_t iter_cb = new H5L_iter_callback(); try { H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data); } @@ -342,18 +341,18 @@ public class TestH5Lbasic { this.link_type = type; } } - class H5L_iter_data implements H5L_iterate_t { + class H5L_iter_data implements H5L_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - H5L_iterate_t iter_data = new H5L_iter_data(); - class H5L_iter_callback implements H5L_iterate_cb { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data) { + H5L_iterate_opdata_t iter_data = new H5L_iter_data(); + class H5L_iter_callback implements H5L_iterate_t { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; } } - H5L_iterate_cb iter_cb = new H5L_iter_callback(); + H5L_iterate_t iter_cb = new H5L_iter_callback(); try { H5.H5Literate_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); } diff --git a/java/test/TestH5Lcreate.java b/java/test/TestH5Lcreate.java index 06c4ac1..c8f2348 100644 --- a/java/test/TestH5Lcreate.java +++ b/java/test/TestH5Lcreate.java @@ -22,8 +22,8 @@ import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5L_iterate_cb; import hdf.hdf5lib.callbacks.H5L_iterate_t; +import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5L_info_t; @@ -320,9 +320,9 @@ public class TestH5Lcreate { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertFalse("H5Lget_info ", link_info==null); + assertFalse("H5Lget_info", link_info==null); assertTrue("H5Lget_info link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT); - assertTrue("Link Address ", link_info.address_val_size>0); + assertTrue("Link Value Size", link_info.val_size > 0); } @Test @@ -383,9 +383,9 @@ public class TestH5Lcreate { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertFalse("H5Lget_info ", link_info==null); + assertFalse("H5Lget_info", link_info==null); assertTrue("H5Lget_info link type", link_info.type==HDF5Constants.H5L_TYPE_SOFT); - assertTrue("Link Address ", link_info.address_val_size>0); + assertTrue("Link Value Size", link_info.val_size > 0); } @Test @@ -431,9 +431,9 @@ public class TestH5Lcreate { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } - assertFalse("H5Lget_info ", link_info==null); + assertFalse("H5Lget_info", link_info==null); assertTrue("H5Lget_info link type", link_info.type==HDF5Constants.H5L_TYPE_EXTERNAL); - assertTrue("Link Address ", link_info.address_val_size>0); + assertTrue("Link Value Size", link_info.val_size > 0); } @Test @@ -740,18 +740,18 @@ public class TestH5Lcreate { this.link_type = type; } } - class H5L_iter_data implements H5L_iterate_t { + class H5L_iter_data implements H5L_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - H5L_iterate_t iter_data = new H5L_iter_data(); - class H5L_iter_callback implements H5L_iterate_cb { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data) { + H5L_iterate_opdata_t iter_data = new H5L_iter_data(); + class H5L_iter_callback implements H5L_iterate_t { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; } } - H5L_iterate_cb iter_cb = new H5L_iter_callback(); + H5L_iterate_t iter_cb = new H5L_iter_callback(); try { H5.H5Lvisit(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, iter_cb, iter_data); } @@ -792,18 +792,18 @@ public class TestH5Lcreate { this.link_type = type; } } - class H5L_iter_data implements H5L_iterate_t { + class H5L_iter_data implements H5L_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - H5L_iterate_t iter_data = new H5L_iter_data(); - class H5L_iter_callback implements H5L_iterate_cb { - public int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data) { + H5L_iterate_opdata_t iter_data = new H5L_iter_data(); + class H5L_iter_callback implements H5L_iterate_t { + public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; } } - H5L_iterate_cb iter_cb = new H5L_iter_callback(); + H5L_iterate_t iter_cb = new H5L_iter_callback(); try { H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, iter_cb, iter_data); } diff --git a/java/test/TestH5Obasic.java b/java/test/TestH5Obasic.java index 8c6689f..20ffc41 100644 --- a/java/test/TestH5Obasic.java +++ b/java/test/TestH5Obasic.java @@ -21,10 +21,14 @@ import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5O_iterate_cb; import hdf.hdf5lib.callbacks.H5O_iterate_t; +import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5O_info_t; +import hdf.hdf5lib.structs.H5O_native_info_t; +import hdf.hdf5lib.structs.H5O_token_t; +import hdf.hdf5lib.structs.H5O_hdr_info_t; +import hdf.hdf5lib.structs.H5_ih_info_t; import org.junit.After; import org.junit.Before; @@ -35,10 +39,8 @@ import org.junit.rules.TestName; public class TestH5Obasic { @Rule public TestName testname = new TestName(); private static final String H5_FILE = "h5ex_g_iterateO1.hdf"; - private static long H5la_ds1 = -1; - private static long H5la_l1 = -1; - private static long H5la_dt1 = -1; - private static long H5la_g1 = -1; + private static H5O_token_t H5la_ds1 = null; + private static H5O_token_t H5la_l1 = null; long H5fid = -1; @Before @@ -242,7 +244,7 @@ public class TestH5Obasic { err.printStackTrace(); fail("testH5Oget_info_by_idx_n0:H5.H5Oget_info: " + err); } - H5la_ds1 = obj_info.addr; + H5la_ds1 = obj_info.token; try {H5.H5Oclose(oid);} catch (Exception ex) {} try { obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); @@ -253,7 +255,7 @@ public class TestH5Obasic { } assertFalse("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx ",obj_info==null); assertTrue("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); - assertTrue("testH5Oget_info_by_idx_n0:Link Address ",obj_info.addr==H5la_ds1); + assertTrue("testH5Oget_info_by_idx_n0:Link Object token", obj_info.token.equals(H5la_ds1)); } @Test @@ -268,7 +270,7 @@ public class TestH5Obasic { err.printStackTrace(); fail("testH5Oget_info_by_idx_n3:H5.H5Oget_info: " + err); } - H5la_l1 = obj_info.addr; + H5la_l1 = obj_info.token; try {H5.H5Oclose(oid);} catch (Exception ex) {} try { obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); @@ -279,7 +281,263 @@ public class TestH5Obasic { } assertFalse("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx ",obj_info==null); assertTrue("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); - assertTrue("testH5Oget_info_by_idx_n3:Link Address ",obj_info.addr==H5la_l1); + assertTrue("testH5Oget_info_by_idx_n3:Link Object Token", obj_info.token.equals(H5la_l1)); + } + + @Test + public void testH5Oget_native_info_dataset() { + long oid = -1; + H5O_native_info_t native_info = null; + + try { + oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); + native_info = H5.H5Oget_native_info(oid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Oget_native_info: " + err); + } + assertFalse("H5Oget_native_info ", native_info == null); + assertFalse("H5Oget_native_info ", native_info.hdr_info == null); + assertFalse("H5Oget_native_info ", native_info.obj_info == null); + assertFalse("H5Oget_native_info ", native_info.attr_info == null); + try {H5.H5Oclose(oid);} catch (Exception ex) {} + } + + @Test + public void testH5Oget_native_info_hardlink() { + long oid = -1; + H5O_native_info_t native_info = null; + + try { + oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); + native_info = H5.H5Oget_native_info(oid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Oget_native_info: " + err); + } + assertFalse("H5Oget_native_info ", native_info == null); + assertFalse("H5Oget_native_info ", native_info.hdr_info == null); + assertFalse("H5Oget_native_info ", native_info.obj_info == null); + assertFalse("H5Oget_native_info ", native_info.attr_info == null); + try {H5.H5Oclose(oid);} catch (Exception ex) {} + } + + @Test + public void testH5Oget_native_info_group() { + long oid = -1; + H5O_native_info_t native_info = null; + + try { + oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT); + native_info = H5.H5Oget_native_info(oid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Oget_native_info: " + err); + } + assertFalse("H5Oget_native_info ", native_info == null); + assertFalse("H5Oget_native_info ", native_info.hdr_info == null); + assertFalse("H5Oget_native_info ", native_info.obj_info == null); + assertFalse("H5Oget_native_info ", native_info.attr_info == null); + try {H5.H5Oclose(oid);} catch (Exception ex) {} + } + + @Test + public void testH5Oget_native_info_datatype() { + long oid = -1; + H5O_native_info_t native_info = null; + + try { + oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT); + native_info = H5.H5Oget_native_info(oid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Oget_native_info: " + err); + } + assertFalse("H5Oget_native_info ", native_info == null); + assertFalse("H5Oget_native_info ", native_info.hdr_info == null); + assertFalse("H5Oget_native_info ", native_info.obj_info == null); + assertFalse("H5Oget_native_info ", native_info.attr_info == null); + try {H5.H5Oclose(oid);} catch (Exception ex) {} + } + + @Test(expected = HDF5LibraryException.class) + public void testH5Oget_native_info_by_name_not_exist_name() throws Throwable { + H5.H5Oget_native_info_by_name(H5fid, "None", HDF5Constants.H5P_DEFAULT); + } + + @Test(expected = HDF5LibraryException.class) + public void testH5Oget_native_info_by_name_not_exists() throws Throwable { + H5.H5Oget_native_info_by_name(H5fid, "Bogus", HDF5Constants.H5P_DEFAULT); + } + + @Test + public void testH5Oget_native_info_by_name_dataset() { + H5O_native_info_t native_info = null; + + try { + native_info = H5.H5Oget_native_info_by_name(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Oget_native_info_by_name: " + err); + } + assertFalse("H5Oget_native_info_by_name ", native_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.hdr_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.obj_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.attr_info == null); + } + + @Test + public void testH5Oget_native_info_by_name_hardlink() { + H5O_native_info_t native_info = null; + + try { + native_info = H5.H5Oget_native_info_by_name(H5fid, "L1", HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Oget_native_info_by_name: " + err); + } + assertFalse("H5Oget_native_info_by_name ", native_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.hdr_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.obj_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.attr_info == null); + } + + @Test + public void testH5Oget_native_info_by_name_group() { + H5O_native_info_t native_info = null; + + try { + native_info = H5.H5Oget_native_info_by_name(H5fid, "G1", HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Oget_native_info_by_name: " + err); + } + assertFalse("H5Oget_native_info_by_name ", native_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.hdr_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.obj_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.attr_info == null); + } + + @Test + public void testH5Oget_native_info_by_name_datatype() { + H5O_native_info_t native_info = null; + + try { + native_info = H5.H5Oget_native_info_by_name(H5fid, "DT1", HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Oget_native_info_by_name: " + err); + } + assertFalse("H5Oget_native_info_by_name ", native_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.hdr_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.obj_info == null); + assertFalse("H5Oget_native_info_by_name ", native_info.attr_info == null); + } + + @Test(expected = HDF5LibraryException.class) + public void testH5Oget_native_info_by_idx_name_not_exist_name() throws Throwable { + H5.H5Oget_native_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + } + + @Test(expected = HDF5LibraryException.class) + public void testH5Oget_native_info_by_idx_name_not_exist_create() throws Throwable { + H5.H5Oget_native_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + } + + @Test(expected = HDF5LibraryException.class) + public void testH5Oget_native_info_by_idx_not_exist_name() throws Throwable { + H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); + } + + @Test(expected = HDF5LibraryException.class) + public void testH5Oget_native_info_by_idx_not_exist_create() throws Throwable { + H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); + } + + @Test + public void testH5Oget_native_info_by_idx_n0() { + long oid = -1; + H5O_native_info_t native_info = null; + H5O_hdr_info_t ohdr; + H5_ih_info_t oinfo; + H5_ih_info_t ainfo; + + try { + oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); + native_info = H5.H5Oget_native_info(oid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Oget_native_info_by_idx_n0:H5.H5Oget_native_info: " + err); + } + + ohdr = native_info.hdr_info; + oinfo = native_info.obj_info; + ainfo = native_info.attr_info; + + try {H5.H5Oclose(oid);} catch (Exception ex) {} + + try { + native_info = H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Oget_native_info_by_idx_n0:H5.H5Oget_native_info_by_idx: " + err); + } + assertFalse("H5Oget_native_info_by_idx ", native_info == null); + assertFalse("H5Oget_native_info_by_idx ", native_info.hdr_info == null); + assertFalse("H5Oget_native_info_by_idx ", native_info.obj_info == null); + assertFalse("H5Oget_native_info_by_idx ", native_info.attr_info == null); + assertTrue("testH5Oget_native_info_by_idx_n0:Object Header Info", native_info.hdr_info.equals(ohdr)); + assertTrue("testH5Oget_native_info_by_idx_n0:Object Info", native_info.obj_info.equals(oinfo)); + assertTrue("testH5Oget_native_info_by_idx_n0:Attribute Info", native_info.attr_info.equals(ainfo)); + } + + @Test + public void testH5Oget_native_info_by_idx_n3() { + long oid = -1; + H5O_native_info_t native_info = null; + H5O_hdr_info_t ohdr; + H5_ih_info_t oinfo; + H5_ih_info_t ainfo; + + try { + oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); + native_info = H5.H5Oget_native_info(oid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Oget_native_info_by_idx_n3:H5.H5Oget_native_info: " + err); + } + + ohdr = native_info.hdr_info; + oinfo = native_info.obj_info; + ainfo = native_info.attr_info; + + try {H5.H5Oclose(oid);} catch (Exception ex) {} + + try { + native_info = H5.H5Oget_native_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Oget_native_info_by_idx_n3:H5.H5Oget_native_info_by_idx: " + err); + } + assertFalse("H5Oget_native_info_by_idx ", native_info == null); + assertFalse("H5Oget_native_info_by_idx ", native_info.hdr_info == null); + assertFalse("H5Oget_native_info_by_idx ", native_info.obj_info == null); + assertFalse("H5Oget_native_info_by_idx ", native_info.attr_info == null); + assertTrue("testH5Oget_native_info_by_idx_n3:Object Header Info", native_info.hdr_info.equals(ohdr)); + assertTrue("testH5Oget_native_info_by_idx_n3:Object Info", native_info.obj_info.equals(oinfo)); + assertTrue("testH5Oget_native_info_by_idx_n3:Attribute Info", native_info.attr_info.equals(ainfo)); } @Test @@ -292,18 +550,18 @@ public class TestH5Obasic { this.link_type = type; } } - class H5O_iter_data implements H5O_iterate_t { + class H5O_iter_data implements H5O_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - H5O_iterate_t iter_data = new H5O_iter_data(); - class H5O_iter_callback implements H5O_iterate_cb { - public int callback(long group, String name, H5O_info_t info, H5O_iterate_t op_data) { + H5O_iterate_opdata_t iter_data = new H5O_iter_data(); + class H5O_iter_callback implements H5O_iterate_t { + public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5O_iter_data)op_data).iterdata.add(id); return 0; } } - H5O_iterate_cb iter_cb = new H5O_iter_callback(); + H5O_iterate_t iter_cb = new H5O_iter_callback(); try { H5.H5Ovisit(H5fid, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data); } @@ -331,18 +589,18 @@ public class TestH5Obasic { this.link_type = type; } } - class H5O_iter_data implements H5O_iterate_t { + class H5O_iter_data implements H5O_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - H5O_iterate_t iter_data = new H5O_iter_data(); - class H5O_iter_callback implements H5O_iterate_cb { - public int callback(long group, String name, H5O_info_t info, H5O_iterate_t op_data) { + H5O_iterate_opdata_t iter_data = new H5O_iter_data(); + class H5O_iter_callback implements H5O_iterate_t { + public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5O_iter_data)op_data).iterdata.add(id); return 0; } } - H5O_iterate_cb iter_cb = new H5O_iter_callback(); + H5O_iterate_t iter_cb = new H5O_iter_callback(); try { H5.H5Ovisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); } @@ -371,7 +629,7 @@ public class TestH5Obasic { } @Test - public void testH5Oopen_by_addr() { + public void testH5Oopen_by_token() { long oid = -1; H5O_info_t obj_info = null; try { @@ -381,32 +639,32 @@ public class TestH5Obasic { } catch (Throwable err) { err.printStackTrace(); - fail("testH5Oopen_by_addr: H5.H5Oget_info: " + err); + fail("testH5Oopen_by_token: H5.H5Oget_info: " + err); } - H5la_ds1 = obj_info.addr; + H5la_ds1 = obj_info.token; try {H5.H5Oclose(oid);} catch (Exception ex) {} try { - oid = H5.H5Oopen_by_addr(H5fid, H5la_ds1); + oid = H5.H5Oopen_by_token(H5fid, H5la_ds1); } catch (Throwable err) { err.printStackTrace(); - fail("testH5Oopen_by_addr: H5.H5Oopen_by_addr: " + err); + fail("testH5Oopen_by_token: H5.H5Oopen_by_token: " + err); } try { obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); - fail("testH5Oopen_by_addr: H5.H5Oget_info: " + err); + fail("testH5Oopen_by_token: H5.H5Oget_info: " + err); } - assertFalse("testH5Oopen_by_addr: H5Oget_info ",obj_info==null); - assertTrue("testH5Oopen_by_addr: H5Oget_info link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); - assertTrue("testH5Oopen_by_addr: Link Address ",obj_info.addr==H5la_ds1); + assertFalse("testH5Oopen_by_token: H5Oget_info ",obj_info==null); + assertTrue("testH5Oopen_by_token: H5Oget_info link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); + assertTrue("testH5Oopen_by_token: Link Object Token", obj_info.token.equals(H5la_ds1)); } finally { try{H5.H5Oclose(oid);} catch (Exception ex) {} } - } + } @Test public void testH5Oopen_by_idx_n0() { @@ -421,14 +679,14 @@ public class TestH5Obasic { err.printStackTrace(); fail("testH5Oopen_by_idx_n0: H5.H5Oget_info: " + err); } - H5la_ds1 = obj_info.addr; + H5la_ds1 = obj_info.token; try {H5.H5Oclose(oid);} catch (Exception ex) {} try { oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); - fail("testH5Oopen_by_addr: H5.H5Oopen_by_addr: " + err); + fail("testH5Oopen_by_idx_n0: H5.H5Oopen_by_idx: " + err); } try { obj_info = H5.H5Oget_info(oid); @@ -439,7 +697,7 @@ public class TestH5Obasic { } assertFalse("testH5Oopen_by_idx_n0: H5Oget_info_by_idx ",obj_info==null); assertTrue("testH5Oopen_by_idx_n0: H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); - assertTrue("testH5Oopen_by_idx_n0: Link Address ",obj_info.addr==H5la_ds1); + assertTrue("testH5Oopen_by_idx_n0: Link Object Token", obj_info.token.equals(H5la_ds1)); } finally { try{H5.H5Oclose(oid);} catch (Exception ex) {} @@ -459,14 +717,14 @@ public class TestH5Obasic { err.printStackTrace(); fail("testH5Oopen_by_idx_n3:H5.H5Oget_info: " + err); } - H5la_l1 = obj_info.addr; + H5la_l1 = obj_info.token; try {H5.H5Oclose(oid);} catch (Exception ex) {} try { oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); - fail("testH5Oopen_by_addr: H5.H5Oopen_by_addr: " + err); + fail("testH5Oopen_by_idx_n3: H5.H5Oopen_by_idx: " + err); } try { obj_info = H5.H5Oget_info(oid); @@ -477,7 +735,7 @@ public class TestH5Obasic { } assertFalse("testH5Oopen_by_idx_n3:H5Oget_info_by_idx ",obj_info==null); assertTrue("testH5Oopen_by_idx_n3:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); - assertTrue("testH5Oopen_by_idx_n3:Link Address ",obj_info.addr==H5la_l1); + assertTrue("testH5Oopen_by_idx_n3:Link Object Token", obj_info.token.equals(H5la_l1)); } finally { try{H5.H5Oclose(oid);} catch (Exception ex) {} diff --git a/java/test/TestH5Ocreate.java b/java/test/TestH5Ocreate.java index de17d8b..5e9fdf2 100644 --- a/java/test/TestH5Ocreate.java +++ b/java/test/TestH5Ocreate.java @@ -22,8 +22,8 @@ import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; -import hdf.hdf5lib.callbacks.H5O_iterate_cb; import hdf.hdf5lib.callbacks.H5O_iterate_t; +import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5O_info_t; @@ -264,9 +264,9 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info ", obj_info==null); + assertFalse("H5Oget_info", obj_info==null); assertTrue("H5Oget_info link type", obj_info.type==HDF5Constants.H5O_TYPE_DATASET); - assertTrue("Link Address ", obj_info.addr>0); + assertTrue("Link Object Token", obj_info.token != null); } @Test(expected = HDF5LibraryException.class) @@ -286,9 +286,9 @@ public class TestH5Ocreate { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } - assertFalse("H5Oget_info ", obj_info==null); + assertFalse("H5Oget_info", obj_info==null); assertTrue("H5Oget_info link type", obj_info.type==HDF5Constants.H5O_TYPE_NAMED_DATATYPE); - assertTrue("Link Address ", obj_info.addr>0); + assertTrue("Link Object Token", obj_info.token != null); } @Test @@ -351,18 +351,18 @@ public class TestH5Ocreate { this.link_type = type; } } - class H5O_iter_data implements H5O_iterate_t { + class H5O_iter_data implements H5O_iterate_opdata_t { public ArrayList<idata> iterdata = new ArrayList<idata>(); } - H5O_iterate_t iter_data = new H5O_iter_data(); - class H5O_iter_callback implements H5O_iterate_cb { - public int callback(long group, String name, H5O_info_t info, H5O_iterate_t op_data) { + H5O_iterate_opdata_t iter_data = new H5O_iter_data(); + class H5O_iter_callback implements H5O_iterate_t { + public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data) { idata id = new idata(name, info.type); ((H5O_iter_data)op_data).iterdata.add(id); return 0; } } - H5O_iterate_cb iter_cb = new H5O_iter_callback(); + H5O_iterate_t iter_cb = new H5O_iter_callback(); try { H5.H5Ovisit(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, iter_cb, iter_data); } diff --git a/java/test/TestH5Oparams.java b/java/test/TestH5Oparams.java index cac3dcd..1f379d3 100644 --- a/java/test/TestH5Oparams.java +++ b/java/test/TestH5Oparams.java @@ -95,6 +95,31 @@ public class TestH5Oparams { } @Test(expected = HDF5LibraryException.class) + public void testH5Oget_native_info_invalid() throws Throwable { + H5.H5Oget_native_info(-1, 0); + } + + @Test(expected = NullPointerException.class) + public void testH5Oget_native_info_by_name_null() throws Throwable { + H5.H5Oget_native_info_by_name(-1, null, 0, HDF5Constants.H5P_DEFAULT); + } + + @Test(expected = HDF5LibraryException.class) + public void testH5Oget_native_info_by_name_invalid() throws Throwable { + H5.H5Oget_native_info_by_name(-1, "/testH5Gcreate", 0, HDF5Constants.H5P_DEFAULT); + } + + @Test(expected = HDF5LibraryException.class) + public void testH5Oget_native_info_by_idx_invalid() throws Throwable { + H5.H5Oget_native_info_by_idx(-1, "Bogus", -1, -1, -1L, 0, -1); + } + + @Test(expected = NullPointerException.class) + public void testH5Oget_native_info_by_idx_null() throws Throwable { + H5.H5Oget_native_info_by_idx(-1, null, 0, 0, 0L, 0, 0); + } + + @Test(expected = HDF5LibraryException.class) public void testH5Olink_invalid() throws Throwable { H5.H5Olink(-1, -1, "Bogus", -1, -1); } diff --git a/java/test/TestH5VL.java b/java/test/TestH5VL.java index 0397be1..d774dbb 100644 --- a/java/test/TestH5VL.java +++ b/java/test/TestH5VL.java @@ -69,14 +69,46 @@ public class TestH5VL { @Test public void testH5VLget_connector_id() { + String H5_FILE = "testFvl.h5"; + + long H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + + try { + long native_id = H5.H5VLget_connector_id(H5fid); + assertTrue("H5.H5VLget_connector_id", native_id >= 0); + + /* + * If HDF5_VOL_CONNECTOR is set, this might not be the + * native connector. Only check for the native connector + * if this isn't set. + */ + String connector = System.getenv("HDF5_VOL_CONNECTOR"); + if (connector == null) + assertEquals(HDF5Constants.H5VL_NATIVE, native_id); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5VLget_connector_id " + err); + } + finally { + if (H5fid > 0) { + try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + } + _deleteFile(H5_FILE); + } + } + + @Test + public void testH5VLget_connector_id_by_name() { try { - long native_id = H5.H5VLget_connector_id(HDF5Constants.H5VL_NATIVE_NAME); - assertTrue("H5.H5VLget_connector_id H5VL_NATIVE_NAME", native_id >= 0); + long native_id = H5.H5VLget_connector_id_by_name(HDF5Constants.H5VL_NATIVE_NAME); + assertTrue("H5.H5VLget_connector_id_by_name H5VL_NATIVE_NAME", native_id >= 0); assertEquals(HDF5Constants.H5VL_NATIVE, native_id); } catch (Throwable err) { err.printStackTrace(); - fail("H5.H5VLget_connector_id " + err); + fail("H5.H5VLget_connector_id_by_name " + err); } } @@ -90,7 +122,15 @@ public class TestH5VL { try { String native_name = H5.H5VLget_connector_name(H5fid); - assertTrue("H5.H5VLget_connector_name H5VL_NATIVE", native_name.compareToIgnoreCase(HDF5Constants.H5VL_NATIVE_NAME)==0); + + /* + * If HDF5_VOL_CONNECTOR is set, this might not be the + * native connector. Only check for the native connector + * if this isn't set. + */ + String connector = System.getenv("HDF5_VOL_CONNECTOR"); + if (connector == null) + assertTrue("H5.H5VLget_connector_name H5VL_NATIVE", native_name.compareToIgnoreCase(HDF5Constants.H5VL_NATIVE_NAME)==0); } catch (Throwable err) { err.printStackTrace(); diff --git a/java/test/junit.sh.in b/java/test/junit.sh.in index ac09db7..598b3d2 100644 --- a/java/test/junit.sh.in +++ b/java/test/junit.sh.in @@ -330,7 +330,7 @@ TESTING JUnit-TestH5 # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5.ext > JUnit-TestH5.out @@ -351,7 +351,7 @@ TESTING JUnit-TestH5Eparams # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Eparams.ext > JUnit-TestH5Eparams.out @@ -372,7 +372,7 @@ TESTING JUnit-TestH5Eregister # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Eregister.ext > JUnit-TestH5Eregister.out @@ -393,7 +393,7 @@ TESTING JUnit-TestH5Fparams # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Fparams.ext > JUnit-TestH5Fparams.out @@ -414,7 +414,7 @@ TESTING JUnit-TestH5Fbasic # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Fbasic.ext > JUnit-TestH5Fbasic.out @@ -435,7 +435,7 @@ TESTING JUnit-TestH5F # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5F.ext > JUnit-TestH5F.out @@ -456,7 +456,7 @@ TESTING JUnit-TestH5Fswmr # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Fswmr.ext > JUnit-TestH5Fswmr.out @@ -477,7 +477,7 @@ TESTING JUnit-TestH5Gbasic # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Gbasic.ext > JUnit-TestH5Gbasic.out @@ -498,7 +498,7 @@ TESTING JUnit-TestH5G # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5G.ext > JUnit-TestH5G.out @@ -519,7 +519,7 @@ TESTING JUnit-TestH5Sbasic # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Sbasic.ext > JUnit-TestH5Sbasic.out @@ -540,7 +540,7 @@ TESTING JUnit-TestH5S # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5S.ext > JUnit-TestH5S.out @@ -561,7 +561,7 @@ TESTING JUnit-TestH5Tparams # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Tparams.ext > JUnit-TestH5Tparams.out @@ -582,7 +582,7 @@ TESTING JUnit-TestH5Tbasic # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Tbasic.ext > JUnit-TestH5Tbasic.out @@ -603,7 +603,7 @@ TESTING JUnit-TestH5T # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5T.ext > JUnit-TestH5T.out @@ -624,7 +624,7 @@ TESTING JUnit-TestH5Dparams # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Dparams.ext > JUnit-TestH5Dparams.out @@ -645,7 +645,7 @@ TESTING JUnit-TestH5D # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5D.ext > JUnit-TestH5D.out @@ -666,7 +666,7 @@ TESTING JUnit-TestH5Dplist # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Dplist.ext > JUnit-TestH5Dplist.out @@ -687,7 +687,7 @@ TESTING JUnit-TestH5Lparams # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Lparams.ext > JUnit-TestH5Lparams.out @@ -708,7 +708,7 @@ TESTING JUnit-TestH5Lbasic # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Lbasic.ext > JUnit-TestH5Lbasic.out @@ -729,7 +729,7 @@ TESTING JUnit-TestH5Lcreate # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Lcreate.ext > JUnit-TestH5Lcreate.out @@ -750,7 +750,7 @@ TESTING JUnit-TestH5R # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5R.ext > JUnit-TestH5R.out @@ -771,7 +771,7 @@ TESTING JUnit-TestH5P # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5P.ext > JUnit-TestH5P.out @@ -792,7 +792,7 @@ TESTING JUnit-TestH5PData # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5PData.ext > JUnit-TestH5PData.out @@ -813,7 +813,7 @@ TESTING JUnit-TestH5Pfapl # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Pfapl.ext > JUnit-TestH5Pfapl.out @@ -834,7 +834,7 @@ TESTING JUnit-TestH5Pvirtual # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Pvirtual.ext > JUnit-TestH5Pvirtual.out @@ -855,7 +855,7 @@ TESTING JUnit-TestH5Plist # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Plist.ext > JUnit-TestH5Plist.out @@ -876,7 +876,7 @@ TESTING JUnit-TestH5A # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5A.ext > JUnit-TestH5A.out @@ -897,7 +897,7 @@ TESTING JUnit-TestH5Oparams # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Oparams.ext > JUnit-TestH5Oparams.out @@ -918,7 +918,7 @@ TESTING JUnit-TestH5Obasic # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Obasic.ext > JUnit-TestH5Obasic.out @@ -939,7 +939,7 @@ TESTING JUnit-TestH5Ocreate # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Ocreate.ext > JUnit-TestH5Ocreate.out @@ -960,7 +960,7 @@ TESTING JUnit-TestH5Ocopy # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Ocopy.ext > JUnit-TestH5Ocopy.out @@ -981,7 +981,7 @@ TESTING JUnit-TestH5PL # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5PL.ext > JUnit-TestH5PL.out @@ -1002,7 +1002,7 @@ TESTING JUnit-TestH5VL # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5VL.ext > JUnit-TestH5VL.out @@ -1023,7 +1023,7 @@ TESTING JUnit-TestH5Z # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Z.ext > JUnit-TestH5Z.out @@ -1044,7 +1044,7 @@ TESTING JUnit-TestH5E # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5E.ext > JUnit-TestH5E.out @@ -1065,7 +1065,7 @@ TESTING JUnit-TestH5Edefault # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Edefault.ext > JUnit-TestH5Edefault.out @@ -1087,7 +1087,7 @@ if test $USE_FILTER_SZIP = "yes"; then # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.[0-9]*]*/Time: XXXX/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Giterate.ext > JUnit-TestH5Giterate.out @@ -1109,7 +1109,7 @@ if test "X$ROS3_VFD" = "Xyes"; then # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/Time: [0-9]*\.,[0-9]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Pfapls3.ext > JUnit-TestH5Pfapls3.out @@ -1131,7 +1131,7 @@ if test "X$HAVE_LIBHDFS" = "Xyes"; then # Extract file name, line number, version and thread IDs because they may be different sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*\.[0-9]*/Time: XXXX/' \ + -e 's/Time: [0-9]*\.,[0-9]*/Time: XXXX/' \ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ JUnit-TestH5Pfaplhdfs.ext > JUnit-TestH5Pfaplhdfs.out diff --git a/java/test/testfiles/JUnit-TestH5Edefault.txt b/java/test/testfiles/JUnit-TestH5Edefault.txt index 48c6254..bb43c64 100644 --- a/java/test/testfiles/JUnit-TestH5Edefault.txt +++ b/java/test/testfiles/JUnit-TestH5Edefault.txt @@ -1,10 +1,8 @@ JUnit version 4.11 -.testH5EprintInt .testH5Eset_current_stack_invalid_stkid .testH5Eset_current_stack .testH5Eget_num .testH5Eclear -.testH5Eprint .testH5Epush_null_name .testH5Eget_num_with_msg .testH5Eclear2_with_msg @@ -30,49 +28,5 @@ JUnit version 4.11 Time: XXXX -OK (28 tests) +OK (26 tests) -HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Fopen(): unable to open file - major: File accessibility - minor: Unable to open file - #001: (file name) line (number) in H5VL_file_open(): open failed - major: Virtual Object Layer - minor: Can't open object - #002: (file name) line (number) in H5VL__file_open(): open failed - major: Virtual Object Layer - minor: Can't open object - #003: (file name) line (number) in H5VL__native_file_open(): unable to open file - major: File accessibility - minor: Unable to open file - #004: (file name) line (number) in H5F_open(): unable to open file: name = 'test', tent_flags = 1 - major: File accessibility - minor: Unable to open file - #005: (file name) line (number) in H5FD_open(): open failed - major: Virtual File Layer - minor: Unable to initialize object - #006: (file name) line (number) in H5FD_sec2_open(): unable to open file: name = 'test', errno = 2, error message = 'No such file or directory', flags = 1, o_flags = 2 - major: File accessibility - minor: Unable to open file -HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Fopen(): unable to open file - major: File accessibility - minor: Unable to open file - #001: (file name) line (number) in H5VL_file_open(): open failed - major: Virtual Object Layer - minor: Can't open object - #002: (file name) line (number) in H5VL__file_open(): open failed - major: Virtual Object Layer - minor: Can't open object - #003: (file name) line (number) in H5VL__native_file_open(): unable to open file - major: File accessibility - minor: Unable to open file - #004: (file name) line (number) in H5F_open(): unable to open file: name = 'test', tent_flags = 1 - major: File accessibility - minor: Unable to open file - #005: (file name) line (number) in H5FD_open(): open failed - major: Virtual File Layer - minor: Unable to initialize object - #006: (file name) line (number) in H5FD_sec2_open(): unable to open file: name = 'test', errno = 2, error message = 'No such file or directory', flags = 1, o_flags = 2 - major: File accessibility - minor: Unable to open file diff --git a/java/test/testfiles/JUnit-TestH5Obasic.txt b/java/test/testfiles/JUnit-TestH5Obasic.txt index d015bdd..c39c01d 100644 --- a/java/test/testfiles/JUnit-TestH5Obasic.txt +++ b/java/test/testfiles/JUnit-TestH5Obasic.txt @@ -1,29 +1,45 @@ JUnit version 4.11 .testH5Oexists_by_name +.testH5Oget_native_info_dataset +.testH5Oopen_by_token .testH5Oget_info_by_idx_n0 .testH5Oget_info_by_idx_n3 +.testH5Oget_native_info_datatype .testH5Oget_info_by_name_not_exist_name .testH5Ovisit_by_name +.testH5Oget_native_info_by_name_datatype .testH5Oget_info_by_idx_name_not_exist_name .testH5Oget_info_datatype .testH5Oget_info_by_idx_not_exist_name .testH5Oopen_by_idx_n0 .testH5Oopen_by_idx_n3 +.testH5Oget_native_info_by_name_not_exist_name .testH5Oopen_not_exists .testH5Ovisit .testH5Oget_info_by_idx_not_exist_create +.testH5Oget_native_info_by_idx_not_exist_name .testH5Oget_info_by_name_hardlink .testH5Oget_info_by_name_group -.testH5Oopen_by_addr .testH5Oget_info_by_name_not_exists +.testH5Oget_native_info_by_idx_not_exist_create .testH5Oget_info_by_name_dataset .testH5Oget_info_group +.testH5Oget_native_info_hardlink +.testH5Oget_native_info_by_name_hardlink +.testH5Oget_native_info_by_idx_name_not_exist_name .testH5Oget_info_by_name_datatype .testH5Oget_info_hardlink +.testH5Oget_native_info_group +.testH5Oget_native_info_by_name_not_exists +.testH5Oget_native_info_by_name_dataset .testH5Oget_info_by_idx_name_not_exist_create +.testH5Oget_native_info_by_idx_n0 +.testH5Oget_native_info_by_idx_n3 .testH5Oget_info_dataset +.testH5Oget_native_info_by_name_group +.testH5Oget_native_info_by_idx_name_not_exist_create Time: XXXX -OK (23 tests) +OK (39 tests) diff --git a/java/test/testfiles/JUnit-TestH5Oparams.txt b/java/test/testfiles/JUnit-TestH5Oparams.txt index bc23695..b756bcf 100644 --- a/java/test/testfiles/JUnit-TestH5Oparams.txt +++ b/java/test/testfiles/JUnit-TestH5Oparams.txt @@ -1,22 +1,27 @@ JUnit version 4.11 .testH5Oget_comment_by_name_null +.testH5Oget_native_info_by_name_invalid .testH5Ovisit_by_name_nullname .testH5Oget_info_invalid .testH5Ovisit_by_name_null .testH5Odisable_mdc_flushes .testH5Oget_comment_invalid +.testH5Oget_native_info_invalid .testH5Oset_comment_by_name_invalid .testH5Oare_mdc_flushes_disabled .testH5Oopen_null .testH5Oclose_invalid .testH5Oflush_invalid +.testH5Oget_native_info_by_name_null .testH5Oget_comment_by_name_invalid .testH5Orefresh_invalid .testH5Ocopy_null_dest +.testH5Oget_native_info_by_idx_null .testH5Olink_invalid .testH5Oget_info_by_idx_invalid .testH5Oget_info_by_idx_null .testH5Olink_null_dest +.testH5Oget_native_info_by_idx_invalid .testH5Oget_info_by_name_invalid .testH5Oget_info_by_name_null .testH5Ocopy_invalid @@ -29,5 +34,5 @@ JUnit version 4.11 Time: XXXX -OK (27 tests) +OK (32 tests) diff --git a/java/test/testfiles/JUnit-TestH5VL.txt b/java/test/testfiles/JUnit-TestH5VL.txt index caadf26..f646009 100644 --- a/java/test/testfiles/JUnit-TestH5VL.txt +++ b/java/test/testfiles/JUnit-TestH5VL.txt @@ -1,4 +1,5 @@ JUnit version 4.11 +.testH5VLget_connector_id_by_name .testH5VLget_connector_id .testH5VLnative_init .testH5VLget_connector_name @@ -7,5 +8,5 @@ JUnit version 4.11 Time: XXXX -OK (5 tests) +OK (6 tests) diff --git a/release_docs/INSTALL_Warnings.txt b/release_docs/INSTALL_Warnings.txt index 5fde45f..97b3f76 100644 --- a/release_docs/INSTALL_Warnings.txt +++ b/release_docs/INSTALL_Warnings.txt @@ -88,11 +88,13 @@ Autotools UNIX warnings added to H5_CFLAGS -Waggregate-return -Wmissing-format-attribute -Wmissing-noreturn + -Wunsuffixed-float-constants (gcc 4.5+) enable-developer-warnings=OFF -Wno-inline -Wno-aggregate-return -Wno-missing-format-attribute -Wno-missing-noreturn + -Wno-unsuffixed-float-constants (gcc 4.5+) IF GCC <= 4.3 -Wno-long-long @@ -128,7 +130,6 @@ IF GCC <= 4.6 -Wstrict-aliasing -Wstrict-overflow=5 -Wjump-misses-init - -Wunsuffixed-float-constants IF GCC <= 4.7 -Wno-long-long @@ -141,7 +142,6 @@ IF GCC <= 4.7 -Wstrict-aliasing -Wstrict-overflow=5 -Wjump-misses-init - -Wunsuffixed-float-constants -Wdouble-promotion -Wtrampolines enable-developer-warnings=ON: @@ -158,7 +158,6 @@ IF GCC <= 4.8 -Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init - -Wunsuffixed-float-constants -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 @@ -205,7 +204,6 @@ IF GCC < 5 -Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init - -Wunsuffixed-float-constants -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 @@ -231,7 +229,6 @@ IF GCC < 6 -Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init - -Wunsuffixed-float-constants -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 @@ -259,7 +256,6 @@ IF GCC < 7 -Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init - -Wunsuffixed-float-constants -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 @@ -322,10 +318,12 @@ IF GNU GCC HDF5_ENABLE_DEV_WARNINGS=ON -Winline -Waggregate-return + -Wunsuffixed-float-constants (gcc 4.5+) HDF5_ENABLE_DEV_WARNINGS=OFF -Wno-unused-parameter -Wno-inline -Wno-aggregate-return + -Wno-unsuffixed-float-constants (gcc 4.5+) ======================================================================== @@ -383,7 +381,6 @@ HDF5_ENABLE_GROUPONE_WARNINGS:BOOL=ON IF GCC >= 4.5 -Wstrict-overflow=5 -Wjump-misses-init - -Wunsuffixed-float-constants ======================================================================== diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index 055229b..3cc0dea 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -48,6 +48,20 @@ New Features Configuration: ------------- + - Added new options to CMake for control of testing + + Added CMake options (default ON); + HDF5_TEST_SERIAL AND/OR HDF5_TEST_PARALLEL + combined with: + HDF5_TEST_TOOLS + HDF5_TEST_EXAMPLES + HDF5_TEST_SWMR + HDF5_TEST_FORTRAN + HDF5_TEST_CPP + HDF5_TEST_JAVA + + (ADB - 2020/01/15, HDFFV-11001) + - Added Clang sanitizers to CMake for analyzer support Added CMake code and files to execute the Clang sanitizers. @@ -368,6 +382,14 @@ New Features Java Library: ---------------- + - Tests fail for non-English locale. + + In the JUnit tests with a non-English locale, only the part before + the decimal comma is replaced by XXXX and this leads to a comparison + error. Changed the regex for the Time substitution. + + (ADB - 2020/01/09, HDFFV-10995) + - Fix a failure in JUnit-TestH5P on 32-bit architectures (JTH - 2019/04/30) diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt index 4b020fa..070cf62 100644 --- a/src/CMakeLists.txt +++ b/src/CMakeLists.txt @@ -386,6 +386,7 @@ IDE_GENERATED_PROPERTIES ("H5I" "${H5I_HDRS}" "${H5I_SOURCES}" ) set (H5L_SOURCES ${HDF5_SRC_DIR}/H5L.c + ${HDF5_SRC_DIR}/H5Ldeprec.c ${HDF5_SRC_DIR}/H5Lexternal.c ) set (H5L_HDRS @@ -659,6 +660,7 @@ set (H5VL_SOURCES ${HDF5_SRC_DIR}/H5VLnative_link.c ${HDF5_SRC_DIR}/H5VLnative_introspect.c ${HDF5_SRC_DIR}/H5VLnative_object.c + ${HDF5_SRC_DIR}/H5VLnative_token.c ${HDF5_SRC_DIR}/H5VLpassthru.c ) set (H5VL_HDRS @@ -276,7 +276,7 @@ H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id) { void *attr = NULL; /* Attribute created */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -360,8 +360,8 @@ H5Acreate_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id, hid_t lapl_id) { - void *attr = NULL; /* attr token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *attr = NULL; /* attr object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -437,8 +437,8 @@ done: hid_t H5Aopen(hid_t loc_id, const char *attr_name, hid_t aapl_id) { - void *attr = NULL; /* attr token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *attr = NULL; /* attr object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; @@ -508,8 +508,8 @@ hid_t H5Aopen_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t aapl_id, hid_t lapl_id) { - void *attr = NULL; /* attr token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *attr = NULL; /* attr object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; @@ -587,7 +587,7 @@ H5Aopen_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t aapl_id, hid_t lapl_id) { void *attr = NULL; /* Attribute opened */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -1328,7 +1328,7 @@ herr_t H5Aiterate2(hid_t loc_id, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value; /* Return value */ @@ -1407,7 +1407,7 @@ H5Aiterate_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5ACmpio.c b/src/H5ACmpio.c index e4b81fa..fadde28 100644 --- a/src/H5ACmpio.c +++ b/src/H5ACmpio.c @@ -498,7 +498,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5AC__construct_candidate_list(H5AC_t *cache_ptr, H5AC_aux_t *aux_ptr, +H5AC__construct_candidate_list(H5AC_t *cache_ptr, H5AC_aux_t H5_ATTR_NDEBUG_UNUSED *aux_ptr, int sync_point_op) { herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5Adeprec.c b/src/H5Adeprec.c index 5fc2823..e0a0f55 100644 --- a/src/H5Adeprec.c +++ b/src/H5Adeprec.c @@ -116,8 +116,8 @@ hid_t H5Acreate1(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t acpl_id) { - void *attr = NULL; /* attr token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + void *attr = NULL; /* attr object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -190,8 +190,8 @@ done: hid_t H5Aopen_name(hid_t loc_id, const char *name) { - void *attr = NULL; /* attr token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + void *attr = NULL; /* attr object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -256,8 +256,8 @@ done: hid_t H5Aopen_idx(hid_t loc_id, unsigned idx) { - void *attr = NULL; /* attr token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + void *attr = NULL; /* attr object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -321,9 +321,9 @@ done: int H5Aget_num_attrs(hid_t loc_id) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; - H5O_info_t oinfo; + H5O_info2_t oinfo; int ret_value = -1; FUNC_ENTER_API((-1)) @@ -337,7 +337,7 @@ H5Aget_num_attrs(hid_t loc_id) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, (-1), "invalid location identifier") /* Get the number of attributes for the object */ - if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, &oinfo, H5O_INFO_ALL) < 0) + if(H5VL_object_get(vol_obj, &loc_params, H5VL_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &oinfo, H5O_INFO_NUM_ATTRS) < 0) HGOTO_ERROR(H5E_ATTR, H5E_CANTGET, (-1), "unable to get attribute count for object") H5_CHECKED_ASSIGN(ret_value, int, oinfo.num_attrs, hsize_t); @@ -387,7 +387,7 @@ done: herr_t H5Aiterate1(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op, void *op_data) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ herr_t ret_value; /* Return value */ FUNC_ENTER_API(H5_ITER_ERROR) diff --git a/src/H5Aint.c b/src/H5Aint.c index 90fb5c8..fc5ea34 100644 --- a/src/H5Aint.c +++ b/src/H5Aint.c @@ -2063,7 +2063,7 @@ done: */ H5A_t * H5A__attr_copy_file(const H5A_t *attr_src, H5F_t *file_dst, hbool_t *recompute_size, - H5O_copy_t *cpy_info) + H5O_copy_t H5_ATTR_NDEBUG_UNUSED *cpy_info) { H5A_t *attr_dst = NULL; /* Destination attribute */ hid_t tid_src = -1; /* Datatype ID for source datatype */ @@ -2020,7 +2020,6 @@ H5B_valid(H5F_t *f, const H5B_class_t *type, haddr_t addr) { H5B_t *bt = NULL; /* The B-tree */ H5UC_t *rc_shared; /* Ref-counted shared info */ - H5B_shared_t *shared; /* Pointer to shared B-tree info */ H5B_cache_ud_t cache_udata; /* User-data for metadata cache callback */ htri_t ret_value = SUCCEED; /* Return value */ @@ -2038,8 +2037,7 @@ H5B_valid(H5F_t *f, const H5B_class_t *type, haddr_t addr) /* Get shared info for B-tree */ if(NULL == (rc_shared = (type->get_shared)(f, NULL))) HGOTO_ERROR(H5E_BTREE, H5E_CANTGET, FAIL, "can't retrieve B-tree's shared ref. count object") - shared = (H5B_shared_t *)H5UC_GET_OBJ(rc_shared); - HDassert(shared); + HDassert((H5B_shared_t *)H5UC_GET_OBJ(rc_shared)); /* * Load the tree node. diff --git a/src/H5B2cache.c b/src/H5B2cache.c index 65286e6..80cb6c5 100644 --- a/src/H5B2cache.c +++ b/src/H5B2cache.c @@ -654,6 +654,7 @@ H5B2__cache_int_deserialize(const void *_image, size_t H5_ATTR_UNUSED len, uint32_t stored_chksum; /* Stored metadata checksum value */ unsigned u; /* Local index variable */ H5B2_internal_t *ret_value = NULL; /* Return value */ + int node_nrec = 0; FUNC_ENTER_STATIC @@ -716,7 +717,8 @@ H5B2__cache_int_deserialize(const void *_image, size_t H5_ATTR_UNUSED len, for(u = 0; u < (unsigned)(internal->nrec + 1); u++) { /* Decode node pointer */ H5F_addr_decode(udata->f, (const uint8_t **)&image, &(int_node_ptr->addr)); - UINT64DECODE_VAR(image, int_node_ptr->node_nrec, udata->hdr->max_nrec_size); + UINT64DECODE_VAR(image, node_nrec, udata->hdr->max_nrec_size); + H5_CHECKED_ASSIGN(int_node_ptr->node_nrec, uint16_t, node_nrec, int); if(udata->depth > 1) UINT64DECODE_VAR(image, int_node_ptr->all_nrec, udata->hdr->node_info[udata->depth - 1].cum_max_nrec_size) else diff --git a/src/H5B2dbg.c b/src/H5B2dbg.c index 0e3ebd5..b5b1c03 100644 --- a/src/H5B2dbg.c +++ b/src/H5B2dbg.c @@ -87,7 +87,7 @@ */ herr_t H5B2__hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, - const H5B2_class_t *type, haddr_t obj_addr) + const H5B2_class_t H5_ATTR_NDEBUG_UNUSED *type, haddr_t H5_ATTR_NDEBUG_UNUSED obj_addr) { H5B2_hdr_t *hdr = NULL; /* B-tree header info */ unsigned u; /* Local index variable */ @@ -182,7 +182,7 @@ done: */ herr_t H5B2__int_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, - const H5B2_class_t *type, haddr_t hdr_addr, unsigned nrec, unsigned depth, haddr_t obj_addr) + const H5B2_class_t *type, haddr_t hdr_addr, unsigned nrec, unsigned depth, haddr_t H5_ATTR_NDEBUG_UNUSED obj_addr) { H5B2_hdr_t *hdr = NULL; /* B-tree header */ H5B2_internal_t *internal = NULL; /* B-tree internal node */ @@ -294,7 +294,7 @@ done: */ herr_t H5B2__leaf_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, - const H5B2_class_t *type, haddr_t hdr_addr, unsigned nrec, haddr_t obj_addr) + const H5B2_class_t *type, haddr_t hdr_addr, unsigned nrec, haddr_t H5_ATTR_NDEBUG_UNUSED obj_addr) { H5B2_hdr_t *hdr = NULL; /* B-tree header */ H5B2_leaf_t *leaf = NULL; /* B-tree leaf node */ diff --git a/src/H5B2internal.c b/src/H5B2internal.c index 7f6b80a..92c802e 100644 --- a/src/H5B2internal.c +++ b/src/H5B2internal.c @@ -1355,7 +1355,7 @@ done: *------------------------------------------------------------------------- */ H5_ATTR_PURE herr_t -H5B2__assert_internal(hsize_t parent_all_nrec, const H5B2_hdr_t *hdr, const H5B2_internal_t *internal) +H5B2__assert_internal(hsize_t parent_all_nrec, const H5B2_hdr_t H5_ATTR_NDEBUG_UNUSED *hdr, const H5B2_internal_t *internal) { hsize_t tot_all_nrec; /* Total number of records at or below this node */ uint16_t u, v; /* Local index variables */ @@ -1396,7 +1396,7 @@ H5B2__assert_internal(hsize_t parent_all_nrec, const H5B2_hdr_t *hdr, const H5B2 *------------------------------------------------------------------------- */ H5_ATTR_PURE herr_t -H5B2__assert_internal2(hsize_t parent_all_nrec, const H5B2_hdr_t *hdr, const H5B2_internal_t *internal, const H5B2_internal_t *internal2) +H5B2__assert_internal2(hsize_t parent_all_nrec, const H5B2_hdr_t H5_ATTR_NDEBUG_UNUSED *hdr, const H5B2_internal_t *internal, const H5B2_internal_t *internal2) { hsize_t tot_all_nrec; /* Total number of records at or below this node */ uint16_t u, v; /* Local index variables */ diff --git a/src/H5B2leaf.c b/src/H5B2leaf.c index beca40c..7ed0468 100644 --- a/src/H5B2leaf.c +++ b/src/H5B2leaf.c @@ -1027,7 +1027,8 @@ done: *------------------------------------------------------------------------- */ H5_ATTR_PURE herr_t -H5B2__assert_leaf(const H5B2_hdr_t *hdr, const H5B2_leaf_t *leaf) +H5B2__assert_leaf(const H5B2_hdr_t H5_ATTR_NDEBUG_UNUSED *hdr, + const H5B2_leaf_t H5_ATTR_NDEBUG_UNUSED *leaf) { /* General sanity checking on node */ HDassert(leaf->nrec <= hdr->node_info->split_nrec); @@ -1056,7 +1056,6 @@ H5C_flush_cache(H5F_t *f, unsigned flags) H5C_ring_t ring; H5C_t * cache_ptr; hbool_t destroy; - hbool_t ignore_protected; herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI(FAIL) @@ -1101,9 +1100,8 @@ H5C_flush_cache(H5F_t *f, unsigned flags) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "an extreme sanity check failed on entry") #endif /* H5C_DO_EXTREME_SANITY_CHECKS */ - ignore_protected = ( (flags & H5C__FLUSH_IGNORE_PROTECTED_FLAG) != 0 ); destroy = ( (flags & H5C__FLUSH_INVALIDATE_FLAG) != 0 ); - HDassert( ! ( destroy && ignore_protected ) ); + HDassert( ! ( destroy && ( (flags & H5C__FLUSH_IGNORE_PROTECTED_FLAG) != 0 )) ); HDassert( ! ( cache_ptr->flush_in_progress ) ); cache_ptr->flush_in_progress = TRUE; @@ -3856,7 +3854,11 @@ H5C__unpin_entry_real(H5C_t *cache_ptr, H5C_cache_entry_t *entry_ptr, { herr_t ret_value = SUCCEED; /* Return value */ +#if H5C_DO_SANITY_CHECKS FUNC_ENTER_STATIC +#else + FUNC_ENTER_STATIC_NOERR +#endif /* Sanity checking */ HDassert(cache_ptr); @@ -3873,7 +3875,9 @@ H5C__unpin_entry_real(H5C_t *cache_ptr, H5C_cache_entry_t *entry_ptr, /* Update the stats for an unpin operation */ H5C__UPDATE_STATS_FOR_UNPIN(cache_ptr, entry_ptr) +#if H5C_DO_SANITY_CHECKS done: +#endif FUNC_LEAVE_NOAPI(ret_value) } /* H5C__unpin_entry_real() */ @@ -105,7 +105,7 @@ } /* end if */ #endif /* H5_HAVE_PARALLEL */ -#ifdef H5_HAVE_PARALLEL +#if defined(H5_HAVE_PARALLEL) && defined(H5_HAVE_INSTRUMENTED_LIBRARY) /* Macro for the duplicated code to test and set properties for a property list */ #define H5CX_TEST_SET_PROP(PROP_NAME, PROP_FIELD) \ { \ @@ -127,7 +127,9 @@ (*head)->ctx.H5_GLUE(PROP_FIELD,_set) = TRUE; \ } /* end if */ \ } +#endif /* defined(H5_HAVE_PARALLEL) && defined(H5_HAVE_INSTRUMENTED_LIBRARY) */ +#ifdef H5_HAVE_PARALLEL /* Macro for the duplicated code to test and set properties for a property list */ #define H5CX_SET_PROP(PROP_NAME, PROP_FIELD) \ if((*head)->ctx.H5_GLUE(PROP_FIELD,_set)) { \ diff --git a/src/H5Clog_json.c b/src/H5Clog_json.c index dd9e9b2..5ac354d 100644 --- a/src/H5Clog_json.c +++ b/src/H5Clog_json.c @@ -1281,7 +1281,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5C__json_write_set_cache_config_log_msg(void *udata, const H5AC_cache_config_t *config, +H5C__json_write_set_cache_config_log_msg(void *udata, const H5AC_cache_config_t H5_ATTR_NDEBUG_UNUSED *config, herr_t fxn_ret_value) { H5C_log_json_udata_t *json_udata = (H5C_log_json_udata_t *)(udata); diff --git a/src/H5Cmpio.c b/src/H5Cmpio.c index e784487..2c176e4 100644 --- a/src/H5Cmpio.c +++ b/src/H5Cmpio.c @@ -174,13 +174,13 @@ H5C_apply_candidate_list(H5F_t * f, int mpi_size) { int i; - int m; - int n; - unsigned first_entry_to_flush; - unsigned last_entry_to_flush; - unsigned total_entries_to_clear = 0; - unsigned total_entries_to_flush = 0; - int * candidate_assignment_table = NULL; + int m; + unsigned n; + unsigned first_entry_to_flush; + unsigned last_entry_to_flush; + unsigned total_entries_to_clear = 0; + unsigned total_entries_to_flush = 0; + unsigned * candidate_assignment_table = NULL; unsigned entries_to_flush[H5C_RING_NTYPES]; unsigned entries_to_clear[H5C_RING_NTYPES]; haddr_t addr; @@ -231,17 +231,18 @@ H5C_apply_candidate_list(H5F_t * f, HGOTO_ERROR(H5E_DATASET, H5E_CANTCREATE, FAIL, "can't create skip list for entries") } /* end if */ - n = num_candidates / mpi_size; - m = num_candidates % mpi_size; - HDassert(n >= 0); - if(NULL == (candidate_assignment_table = (int *)H5MM_malloc(sizeof(int) * (size_t)(mpi_size + 1)))) + n = num_candidates / (unsigned)mpi_size; + if(num_candidates % (unsigned)mpi_size > INT_MAX) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "m overflow") + m = (int)(num_candidates % (unsigned)mpi_size); + + if(NULL == (candidate_assignment_table = (unsigned *)H5MM_malloc(sizeof(unsigned) * (size_t)(mpi_size + 1)))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for candidate assignment table") candidate_assignment_table[0] = 0; candidate_assignment_table[mpi_size] = num_candidates; if(m == 0) { /* mpi_size is an even divisor of num_candidates */ - HDassert(n > 0); for(i = 1; i < mpi_size; i++) candidate_assignment_table[i] = candidate_assignment_table[i - 1] + n; } /* end if */ @@ -249,7 +250,7 @@ H5C_apply_candidate_list(H5F_t * f, for(i = 1; i <= m; i++) candidate_assignment_table[i] = candidate_assignment_table[i - 1] + n + 1; - if(num_candidates < mpi_size) { + if(num_candidates < (unsigned)mpi_size) { for(i = m + 1; i < mpi_size; i++) candidate_assignment_table[i] = num_candidates; } /* end if */ @@ -263,7 +264,7 @@ H5C_apply_candidate_list(H5F_t * f, #if H5C_DO_SANITY_CHECKS /* Verify that the candidate assignment table has the expected form */ for(i = 1; i < mpi_size - 1; i++) { - int a, b; + unsigned a, b; a = candidate_assignment_table[i] - candidate_assignment_table[i - 1]; b = candidate_assignment_table[i + 1] - candidate_assignment_table[i]; @@ -282,7 +283,7 @@ H5C_apply_candidate_list(H5F_t * f, tbl_buf[i] = '\0'; HDsprintf(&(tbl_buf[0]), "candidate assignment table = "); for(i = 0; i <= mpi_size; i++) - HDsprintf(&(tbl_buf[HDstrlen(tbl_buf)]), " %d", candidate_assignment_table[i]); + HDsprintf(&(tbl_buf[HDstrlen(tbl_buf)]), " %u", candidate_assignment_table[i]); HDsprintf(&(tbl_buf[HDstrlen(tbl_buf)]), "\n"); HDfprintf(stdout, "%s", tbl_buf); @@ -359,11 +360,11 @@ H5C_apply_candidate_list(H5F_t * f, n = 0; for(i = 0; i < H5C_RING_NTYPES; i++) { m += (int)entries_to_flush[i]; - n += (int)entries_to_clear[i]; + n += entries_to_clear[i]; } /* end if */ HDassert((unsigned)m == total_entries_to_flush); - HDassert((unsigned)n == total_entries_to_clear); + HDassert(n == total_entries_to_clear); #endif /* H5C_DO_SANITY_CHECKS */ #if H5C_APPLY_CANDIDATE_LIST__DEBUG @@ -397,7 +398,7 @@ H5C_apply_candidate_list(H5F_t * f, done: if(candidate_assignment_table != NULL) - candidate_assignment_table = (int *)H5MM_xfree((void *)candidate_assignment_table); + candidate_assignment_table = (unsigned *)H5MM_xfree((void *)candidate_assignment_table); if(cache_ptr->coll_write_list) { if(H5SL_close(cache_ptr->coll_write_list) < 0) HDONE_ERROR(H5E_CACHE, H5E_CANTFREE, FAIL, "failed to destroy skip list") diff --git a/src/H5Cpkg.h b/src/H5Cpkg.h index 9156c0d..cafc6d5 100644 --- a/src/H5Cpkg.h +++ b/src/H5Cpkg.h @@ -4923,7 +4923,7 @@ H5_DLL herr_t H5C__untag_entry(H5C_t *cache, H5C_cache_entry_t *entry); /* Testing functions */ #ifdef H5C_TESTING -H5_DLL herr_t H5C__verify_cork_tag_test(hid_t fid, haddr_t tag, hbool_t status); +H5_DLL herr_t H5C__verify_cork_tag_test(hid_t fid, H5O_token_t tag_token, hbool_t status); #endif /* H5C_TESTING */ #endif /* _H5Cpkg_H */ diff --git a/src/H5Ctest.c b/src/H5Ctest.c index 340071a..7f24302 100644 --- a/src/H5Ctest.c +++ b/src/H5Ctest.c @@ -35,12 +35,13 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Cpkg.h" /* Cache */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fpkg.h" /* Files */ -#include "H5Iprivate.h" /* IDs */ +#include "H5private.h" /* Generic Functions */ +#include "H5Cpkg.h" /* Cache */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* Files */ +#include "H5Iprivate.h" /* IDs */ #include "H5VLprivate.h" /* Virtual Object Layer */ +#include "H5VLnative_private.h" /* Native VOL connector */ /****************/ @@ -132,11 +133,12 @@ done: *------------------------------------------------------------------------- */ herr_t -H5C__verify_cork_tag_test(hid_t fid, haddr_t tag, hbool_t status) +H5C__verify_cork_tag_test(hid_t fid, H5O_token_t tag_token, hbool_t status) { H5F_t * f; /* File Pointer */ H5C_t * cache; /* Cache Pointer */ H5C_tag_iter_vct_ctx_t ctx; /* Context for iterator callback */ + haddr_t tag; /* Tagged address */ herr_t ret_value = SUCCEED; /* Return value */ /* Function enter macro */ @@ -146,6 +148,11 @@ H5C__verify_cork_tag_test(hid_t fid, haddr_t tag, hbool_t status) if(NULL == (f = (H5F_t *)H5VL_object_verify(fid, H5I_FILE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") + /* Convert token to address */ + tag = HADDR_UNDEF; + if(H5VL_native_token_to_addr(f, H5I_FILE, tag_token, &tag) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "can't get address for token") + /* Get cache pointer */ cache = f->shared->cache; @@ -100,7 +100,7 @@ H5Dcreate2(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id) { void *dset = NULL; /* New dataset's info */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -199,8 +199,8 @@ hid_t H5Dcreate_anon(hid_t loc_id, hid_t type_id, hid_t space_id, hid_t dcpl_id, hid_t dapl_id) { - void *dset = NULL; /* dset token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *dset = NULL; /* dset object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -265,8 +265,8 @@ done: hid_t H5Dopen2(hid_t loc_id, const char *name, hid_t dapl_id) { - void *dset = NULL; /* dset token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *dset = NULL; /* dset object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ diff --git a/src/H5Dbtree.c b/src/H5Dbtree.c index c13c36a..098e01b 100644 --- a/src/H5Dbtree.c +++ b/src/H5Dbtree.c @@ -253,7 +253,7 @@ H5D__btree_get_shared(const H5F_t H5_ATTR_UNUSED *f, const void *_udata) *------------------------------------------------------------------------- */ static herr_t -H5D__btree_new_node(H5F_t *f, H5B_ins_t op, void *_lt_key, void *_udata, +H5D__btree_new_node(H5F_t H5_ATTR_NDEBUG_UNUSED *f, H5B_ins_t op, void *_lt_key, void *_udata, void *_rt_key, haddr_t *addr_p/*out*/) { H5D_btree_key_t *lt_key = (H5D_btree_key_t *) _lt_key; @@ -536,7 +536,7 @@ done: *------------------------------------------------------------------------- */ static H5B_ins_t -H5D__btree_insert(H5F_t *f, haddr_t addr, void *_lt_key, hbool_t *lt_key_changed, +H5D__btree_insert(H5F_t H5_ATTR_NDEBUG_UNUSED *f, haddr_t H5_ATTR_NDEBUG_UNUSED addr, void *_lt_key, hbool_t *lt_key_changed, void *_md_key, void *_udata, void *_rt_key, hbool_t H5_ATTR_UNUSED *rt_key_changed, haddr_t *new_node_p/*out*/) { diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index 17b0d16..33950a4 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -1683,7 +1683,7 @@ H5D__create_chunk_file_map_all(H5D_chunk_map_t *fm, const H5D_io_info_t /* Iterate through each chunk in the dataset */ while(sel_points) { H5D_chunk_info_t *new_chunk_info; /* chunk information to insert into skip list */ - hssize_t schunk_points; /* Number of elements in chunk selection */ + hsize_t chunk_points; /* Number of elements in chunk selection */ /* Add temporary chunk to the list of chunks */ @@ -1727,12 +1727,11 @@ H5D__create_chunk_file_map_all(H5D_chunk_map_t *fm, const H5D_io_info_t } /* end if */ /* Get number of elements selected in chunk */ - if((schunk_points = H5S_GET_SELECT_NPOINTS(new_chunk_info->fspace)) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get file selection # of elements") - H5_CHECKED_ASSIGN(new_chunk_info->chunk_points, uint32_t, schunk_points, hssize_t); + chunk_points = H5S_GET_SELECT_NPOINTS(new_chunk_info->fspace); + H5_CHECKED_ASSIGN(new_chunk_info->chunk_points, uint32_t, chunk_points, hsize_t); /* Decrement # of points left in file selection */ - sel_points -= (hsize_t)schunk_points; + sel_points -= chunk_points; /* Advance to next chunk if we are not done */ if(sel_points > 0) { @@ -1870,7 +1869,7 @@ H5D__create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t /* (Casting away const OK - QAK) */ if(TRUE == H5S_SELECT_INTERSECT_BLOCK(fm->file_space, coords, end)) { H5D_chunk_info_t *new_chunk_info; /* chunk information to insert into skip list */ - hssize_t schunk_points; /* Number of elements in chunk selection */ + hsize_t chunk_points; /* Number of elements in chunk selection */ /* Create dataspace for chunk, 'AND'ing the overall selection with * the current chunk. @@ -1923,12 +1922,11 @@ H5D__create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t } /* end if */ /* Get number of elements selected in chunk */ - if((schunk_points = H5S_GET_SELECT_NPOINTS(new_chunk_info->fspace)) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get file selection # of elements") - H5_CHECKED_ASSIGN(new_chunk_info->chunk_points, uint32_t, schunk_points, hssize_t); + chunk_points = H5S_GET_SELECT_NPOINTS(new_chunk_info->fspace); + H5_CHECKED_ASSIGN(new_chunk_info->chunk_points, uint32_t, chunk_points, hsize_t); /* Decrement # of points left in file selection */ - sel_points -= (hsize_t)schunk_points; + sel_points -= chunk_points; /* Leave if we are done */ if(sel_points == 0) @@ -2131,7 +2129,7 @@ H5D__create_chunk_mem_map_1d(const H5D_chunk_map_t *fm) { H5D_chunk_info_t *chunk_info; /* Pointer to chunk information */ H5SL_node_t *curr_node; /* Current node in skip list */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -4983,12 +4981,12 @@ H5D__chunk_collective_fill(const H5D_t *dset, H5D_chunk_coll_info_t *chunk_info, /* Distribute evenly the number of blocks between processes. */ if(mpi_size == 0) HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "Resulted in division by zero") - num_blocks = chunk_info->num_io / mpi_size; /* value should be the same on all procs */ + num_blocks = (size_t)(chunk_info->num_io / (size_t)mpi_size); /* value should be the same on all procs */ /* after evenly distributing the blocks between processes, are there any leftover blocks for each individual process (round-robin) */ - leftover_blocks = chunk_info->num_io % mpi_size; + leftover_blocks = (size_t)(chunk_info->num_io % (size_t)mpi_size); /* Cast values to types needed by MPI */ H5_CHECKED_ASSIGN(blocks, int, num_blocks, size_t); @@ -4997,9 +4995,9 @@ H5D__chunk_collective_fill(const H5D_t *dset, H5D_chunk_coll_info_t *chunk_info, /* Allocate buffers */ /* (MSC - should not need block_lens if MPI_type_create_hindexed_block is working) */ - if(NULL == (block_lens = (int *)H5MM_malloc((blocks + 1) * sizeof(int)))) + if(NULL == (block_lens = (int *)H5MM_malloc((size_t)(blocks + 1) * sizeof(int)))) HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate chunk lengths buffer") - if(NULL == (chunk_disp_array = (MPI_Aint *)H5MM_malloc((blocks + 1) * sizeof(MPI_Aint)))) + if(NULL == (chunk_disp_array = (MPI_Aint *)H5MM_malloc((size_t)(blocks + 1) * sizeof(MPI_Aint)))) HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate chunk file displacement buffer") for(i = 0 ; i < blocks ; i++) { @@ -5104,7 +5102,7 @@ H5D__chunk_prune_fill(H5D_chunk_it_ud1_t *udata, hbool_t new_unfilt_chunk) const hsize_t *scaled = udata->common.scaled; /* Scaled chunk offset */ H5S_sel_iter_t *chunk_iter = NULL; /* Memory selection iteration info */ hbool_t chunk_iter_init = FALSE; /* Whether the chunk iterator has been initialized */ - hssize_t sel_nelmts; /* Number of elements in selection */ + hsize_t sel_nelmts; /* Number of elements in selection */ hsize_t count[H5O_LAYOUT_NDIMS]; /* Element count of hyperslab */ size_t chunk_size; /*size of a chunk */ void *chunk; /* The file chunk */ @@ -5165,8 +5163,7 @@ H5D__chunk_prune_fill(H5D_chunk_it_ud1_t *udata, hbool_t new_unfilt_chunk) /* Get the number of elements in the selection */ sel_nelmts = H5S_GET_SELECT_NPOINTS(udata->chunk_space); - HDassert(sel_nelmts >= 0); - H5_CHECK_OVERFLOW(sel_nelmts, hssize_t, size_t); + H5_CHECK_OVERFLOW(sel_nelmts, hsize_t, size_t); /* Check for VL datatype & non-default fill value */ if(udata->fb_info.has_vlen_fill_type) diff --git a/src/H5Ddeprec.c b/src/H5Ddeprec.c index 2b50559..f4f4223 100644 --- a/src/H5Ddeprec.c +++ b/src/H5Ddeprec.c @@ -113,8 +113,8 @@ hid_t H5Dcreate1(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t dcpl_id) { - void *dset = NULL; /* dset token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *dset = NULL; /* dset object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -186,8 +186,8 @@ done: hid_t H5Dopen1(hid_t loc_id, const char *name) { - void *dset = NULL; /* dset token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *dset = NULL; /* dset object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ diff --git a/src/H5Dfill.c b/src/H5Dfill.c index 3ccee90..f5a5238 100644 --- a/src/H5Dfill.c +++ b/src/H5Dfill.c @@ -249,12 +249,11 @@ H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, * of the VL data. */ if(TRUE == H5T_detect_class(fill_type, H5T_VLEN, FALSE)) { - hssize_t nelmts; /* Number of data elements */ + hsize_t nelmts; /* Number of data elements */ /* Get the number of elements in the selection */ nelmts = H5S_GET_SELECT_NPOINTS(space); - HDassert(nelmts >= 0); - H5_CHECK_OVERFLOW(nelmts, hssize_t, size_t); + H5_CHECK_OVERFLOW(nelmts, hsize_t, size_t); /* Allocate a temporary buffer */ if(NULL == (tmp_buf = H5FL_BLK_MALLOC(type_conv, (size_t)nelmts * buf_size))) diff --git a/src/H5Dint.c b/src/H5Dint.c index c3e0c0d..436a507 100644 --- a/src/H5Dint.c +++ b/src/H5Dint.c @@ -89,7 +89,7 @@ static herr_t H5D__init_storage(const H5D_io_info_t *io_info, hbool_t full_overw hsize_t old_dim[]); static herr_t H5D__append_flush_setup(H5D_t *dset, hid_t dapl_id); static herr_t H5D__close_cb(H5VL_object_t *dset_vol_obj); -static herr_t H5D__use_minimized_dset_headers(H5F_t *file, H5D_t *dset, hbool_t *minimize); +static herr_t H5D__use_minimized_dset_headers(H5F_t *file, hbool_t *minimize); static herr_t H5D__prepare_minimized_oh(H5F_t *file, H5D_t *dset, H5O_loc_t *oloc); static size_t H5D__calculate_minimum_header_size(H5F_t *file, H5D_t *dset, H5O_t *ohdr); static void *H5D__vlen_get_buf_size_alloc(size_t size, void *info); @@ -737,14 +737,13 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5D__use_minimized_dset_headers(H5F_t *file, H5D_t *dset, hbool_t *minimize) +H5D__use_minimized_dset_headers(H5F_t *file, hbool_t *minimize) { herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI_NOINIT; HDassert(file); - HDassert(dset); HDassert(minimize); /* Get the dataset object header minimize flag for this call */ @@ -1015,7 +1014,7 @@ H5D__update_oh_info(H5F_t *file, H5D_t *dset, hid_t dapl_id) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set fill value info") } /* end if */ - if(H5D__use_minimized_dset_headers(file, dset, &minimize_header) == FAIL) + if(H5D__use_minimized_dset_headers(file, &minimize_header) == FAIL) HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get minimize settings") if(TRUE == minimize_header) { diff --git a/src/H5Dio.c b/src/H5Dio.c index 6b02b68..0f4e703 100644 --- a/src/H5Dio.c +++ b/src/H5Dio.c @@ -409,9 +409,8 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, /* Note that if this variable is used, the */ /* projected mem space must be discarded at the */ /* end of the function to avoid a memory leak. */ - H5D_storage_t store; /*union of EFL and chunk pointer in file space */ - hssize_t snelmts; /*total number of elmts (signed) */ - hsize_t nelmts; /*total number of elmts */ + H5D_storage_t store; /* union of EFL and chunk pointer in file space */ + hsize_t nelmts; /* total number of elmts */ hbool_t io_op_init = FALSE; /* Whether the I/O op has been initialized */ char fake_char; /* Temporary variable for NULL buffer pointers */ herr_t ret_value = SUCCEED; /* Return value */ @@ -425,9 +424,7 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, file_space = dataset->shared->space; if(!mem_space) mem_space = file_space; - if((snelmts = H5S_GET_SELECT_NPOINTS(mem_space)) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dst dataspace has invalid selection") - H5_CHECKED_ASSIGN(nelmts, hsize_t, snelmts, hssize_t); + nelmts = H5S_GET_SELECT_NPOINTS(mem_space); /* Set up datatype info for operation */ if(H5D__typeinfo_init(dataset, mem_type_id, FALSE, &type_info) < 0) @@ -450,7 +447,7 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, #endif /*H5_HAVE_PARALLEL*/ /* Make certain that the number of elements in each selection is the same */ - if(nelmts != (hsize_t)H5S_GET_SELECT_NPOINTS(file_space)) + if(nelmts != H5S_GET_SELECT_NPOINTS(file_space)) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "src and dest dataspaces have different number of elements selected") /* Check for a NULL buffer, after the H5S_ALL dataspace selection has been handled */ @@ -623,9 +620,8 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, /* Note that if this variable is used, the */ /* projected mem space must be discarded at the */ /* end of the function to avoid a memory leak. */ - H5D_storage_t store; /*union of EFL and chunk pointer in file space */ - hssize_t snelmts; /*total number of elmts (signed) */ - hsize_t nelmts; /*total number of elmts */ + H5D_storage_t store; /* union of EFL and chunk pointer in file space */ + hsize_t nelmts; /* total number of elmts */ hbool_t io_op_init = FALSE; /* Whether the I/O op has been initialized */ char fake_char; /* Temporary variable for NULL buffer pointers */ herr_t ret_value = SUCCEED; /* Return value */ @@ -680,12 +676,10 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, if(!mem_space) mem_space = file_space; - if((snelmts = H5S_GET_SELECT_NPOINTS(mem_space)) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "src dataspace has invalid selection") - H5_CHECKED_ASSIGN(nelmts, hsize_t, snelmts, hssize_t); + nelmts = H5S_GET_SELECT_NPOINTS(mem_space); /* Make certain that the number of elements in each selection is the same */ - if(nelmts != (hsize_t)H5S_GET_SELECT_NPOINTS(file_space)) + if(nelmts != H5S_GET_SELECT_NPOINTS(file_space)) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "src and dest dataspaces have different number of elements selected") /* Check for a NULL buffer, after the H5S_ALL dataspace selection has been handled */ diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c index 0dbbe9f..91557c3 100644 --- a/src/H5Dmpio.c +++ b/src/H5Dmpio.c @@ -2524,7 +2524,9 @@ H5D__obtain_mpio_mode(H5D_io_info_t* io_info, H5D_chunk_map_t *fm, } /* end if */ /* Broadcasting the MPI_IO option info. and chunk address info. */ - if(MPI_SUCCESS != (mpi_code = MPI_Bcast(mergebuf, ((sizeof(haddr_t) + 1) * total_chunks), MPI_BYTE, root, comm))) + if((sizeof(haddr_t) + 1) * total_chunks > INT_MAX) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "result overflow") + if(MPI_SUCCESS != (mpi_code = MPI_Bcast(mergebuf, (int)((sizeof(haddr_t) + 1) * total_chunks), MPI_BYTE, root, comm))) HMPI_GOTO_ERROR(FAIL, "MPI_BCast failed", mpi_code) H5MM_memcpy(assign_io_mode, mergebuf, total_chunks); @@ -2606,7 +2608,7 @@ H5D__construct_filtered_io_info_list(const H5D_io_info_t *io_info, const H5D_typ H5D_chunk_info_t *chunk_info; H5D_chunk_ud_t udata; H5SL_node_t *chunk_node; - hssize_t select_npoints; + hsize_t select_npoints; hssize_t chunk_npoints; if(NULL == (local_info_array = (H5D_filtered_collective_io_info_t *) H5MM_malloc(num_chunks_selected * sizeof(H5D_filtered_collective_io_info_t)))) @@ -2632,8 +2634,7 @@ H5D__construct_filtered_io_info_list(const H5D_io_info_t *io_info, const H5D_typ H5MM_memcpy(local_info_array[i].scaled, chunk_info->scaled, sizeof(chunk_info->scaled)); - if ((select_npoints = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid") + select_npoints = H5S_GET_SELECT_NPOINTS(chunk_info->mspace); local_info_array[i].io_size = (size_t) select_npoints * type_info->src_type_size; /* Currently the full overwrite status of a chunk is only obtained on a per-process @@ -2841,7 +2842,7 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty if (mpi_rank != chunk_entry->owners.new_owner) { H5D_chunk_info_t *chunk_info = NULL; unsigned char *mod_data_p = NULL; - hssize_t iter_nelmts; + hsize_t iter_nelmts; size_t mod_data_size; /* Look up the chunk and get its file and memory dataspaces */ @@ -2854,9 +2855,9 @@ H5D__chunk_redistribute_shared_chunks(const H5D_io_info_t *io_info, const H5D_ty if(H5S_encode(chunk_info->fspace, &mod_data_p, &mod_data_size) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "unable to get encoded dataspace size") - if((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid") + iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace); + H5_CHECK_OVERFLOW(iter_nelmts, hsize_t, size_t); mod_data_size += (size_t) iter_nelmts * type_info->src_type_size; if(NULL == (mod_data[num_send_requests] = (unsigned char *) H5MM_malloc(mod_data_size))) @@ -3088,7 +3089,7 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk H5Z_EDC_t err_detect; /* Error detection info */ H5Z_cb_t filter_cb; /* I/O filter callback function */ unsigned filter_mask = 0; - hssize_t iter_nelmts; /* Number of points to iterate over for the chunk IO operation */ + hsize_t iter_nelmts; /* Number of points to iterate over for the chunk IO operation */ hssize_t extent_npoints; hsize_t true_chunk_size; hbool_t mem_iter_init = FALSE; @@ -3193,17 +3194,15 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize memory selection information") file_iter_init = TRUE; - if((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->fspace)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid") + iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->fspace); - if(NULL == (tmp_gath_buf = H5MM_malloc((hsize_t) iter_nelmts * type_info->src_type_size))) + if(NULL == (tmp_gath_buf = H5MM_malloc(iter_nelmts * type_info->src_type_size))) HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate temporary gather buffer") if(!H5D__gather_mem(chunk_entry->buf, file_iter, (size_t) iter_nelmts, tmp_gath_buf)) HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "couldn't gather from chunk buffer") - if((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid") + iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace); if(H5D__scatter_mem(tmp_gath_buf, mem_iter, (size_t) iter_nelmts, io_info->u.rbuf) < 0) HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "couldn't scatter to read buffer") @@ -3211,10 +3210,9 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk break; case H5D_IO_OP_WRITE: - if((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid") + iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->mspace); - if(NULL == (tmp_gath_buf = H5MM_malloc((hsize_t) iter_nelmts * type_info->src_type_size))) + if(NULL == (tmp_gath_buf = H5MM_malloc(iter_nelmts * type_info->src_type_size))) HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "couldn't allocate temporary gather buffer") /* Gather modification data from the application write buffer into a temporary buffer */ @@ -3230,8 +3228,7 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize file selection information") mem_iter_init = TRUE; - if((iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->fspace)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid") + iter_nelmts = H5S_GET_SELECT_NPOINTS(chunk_info->fspace); /* Scatter the owner's modification data into the chunk data buffer according to * the file space. @@ -3262,8 +3259,7 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize memory selection information") mem_iter_init = TRUE; - if((iter_nelmts = H5S_GET_SELECT_NPOINTS(dataspace)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "dataspace is invalid") + iter_nelmts = H5S_GET_SELECT_NPOINTS(dataspace); /* Update the chunk data with the received modification data */ if(H5D__scatter_mem(mod_data_p, mem_iter, (size_t) iter_nelmts, chunk_entry->buf) < 0) diff --git a/src/H5Dnone.c b/src/H5Dnone.c index 9346220..2093512 100644 --- a/src/H5Dnone.c +++ b/src/H5Dnone.c @@ -378,7 +378,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5D__none_idx_copy_setup(const H5D_chk_idx_info_t *idx_info_src, +H5D__none_idx_copy_setup(const H5D_chk_idx_info_t H5_ATTR_NDEBUG_UNUSED *idx_info_src, const H5D_chk_idx_info_t *idx_info_dst) { herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5Dsingle.c b/src/H5Dsingle.c index 4510a03..8efa771 100644 --- a/src/H5Dsingle.c +++ b/src/H5Dsingle.c @@ -437,7 +437,7 @@ H5D__single_idx_delete(const H5D_chk_idx_info_t *idx_info) *------------------------------------------------------------------------- */ static herr_t -H5D__single_idx_copy_setup(const H5D_chk_idx_info_t *idx_info_src, +H5D__single_idx_copy_setup(const H5D_chk_idx_info_t H5_ATTR_NDEBUG_UNUSED *idx_info_src, const H5D_chk_idx_info_t *idx_info_dst) { herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5EAcache.c b/src/H5EAcache.c index 1fd9c44..1d182a4 100644 --- a/src/H5EAcache.c +++ b/src/H5EAcache.c @@ -1543,7 +1543,7 @@ END_FUNC(STATIC) /* end H5EA__cache_sblock_verify_chksum() */ */ BEGIN_FUNC(STATIC, ERR, void *, NULL, NULL, -H5EA__cache_dblock_deserialize(const void *_image, size_t len, +H5EA__cache_dblock_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_udata, hbool_t H5_ATTR_UNUSED *dirty)) /* Local variables */ @@ -2080,7 +2080,7 @@ END_FUNC(STATIC) /* end H5EA__cache_dblk_page_image_len() */ */ BEGIN_FUNC(STATIC, ERR, herr_t, SUCCEED, FAIL, -H5EA__cache_dblk_page_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_UNUSED len, +H5EA__cache_dblk_page_serialize(const H5F_t H5_ATTR_NDEBUG_UNUSED *f, void *_image, size_t H5_ATTR_UNUSED len, void *_thing)) /* Local variables */ diff --git a/src/H5EAtest.c b/src/H5EAtest.c index 814e64f..58e255a 100644 --- a/src/H5EAtest.c +++ b/src/H5EAtest.c @@ -279,7 +279,7 @@ END_FUNC(STATIC) /* end H5EA__test_encode() */ */ BEGIN_FUNC(STATIC, NOERR, herr_t, SUCCEED, -, -H5EA__test_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx)) +H5EA__test_decode(const void *_raw, void *_elmt, size_t nelmts, void H5_ATTR_NDEBUG_UNUSED *_ctx)) /* Local variables */ #ifndef NDEBUG diff --git a/src/H5Epkg.h b/src/H5Epkg.h index ac98496..86b5b73 100644 --- a/src/H5Epkg.h +++ b/src/H5Epkg.h @@ -77,7 +77,7 @@ typedef struct { } H5E_auto_op_t; #else /* H5_NO_DEPRECATED_SYMBOLS */ typedef struct { - H5E_auto_t func2; /* Only the new style callback function is available. */ + H5E_auto2_t func2; /* Only the new style callback function is available. */ } H5E_auto_op_t; #endif /* H5_NO_DEPRECATED_SYMBOLS */ diff --git a/src/H5Epublic.h b/src/H5Epublic.h index 3eae2da..ed14217 100644 --- a/src/H5Epublic.h +++ b/src/H5Epublic.h @@ -100,14 +100,14 @@ H5_DLLVAR hid_t H5E_ERR_CLS_g; } #else /* H5_NO_DEPRECATED_SYMBOLS */ #define H5E_BEGIN_TRY { \ - H5E_auto_t saved_efunc; \ + H5E_auto2_t saved_efunc; \ void *H5E_saved_edata; \ \ - (void)H5Eget_auto(H5E_DEFAULT, &saved_efunc, &H5E_saved_edata); \ - (void)H5Eset_auto(H5E_DEFAULT, NULL, NULL); + (void)H5Eget_auto2(H5E_DEFAULT, &saved_efunc, &H5E_saved_edata); \ + (void)H5Eset_auto2(H5E_DEFAULT, NULL, NULL); #define H5E_END_TRY \ - (void)H5Eset_auto(H5E_DEFAULT, saved_efunc, H5E_saved_edata); \ + (void)H5Eset_auto2(H5E_DEFAULT, saved_efunc, H5E_saved_edata); \ } #endif /* H5_NO_DEPRECATED_SYMBOLS */ diff --git a/src/H5FAcache.c b/src/H5FAcache.c index 2f0d1b4..922153c 100644 --- a/src/H5FAcache.c +++ b/src/H5FAcache.c @@ -253,7 +253,7 @@ END_FUNC(STATIC) /* end H5FA__cache_hdr_verify_chksum() */ */ BEGIN_FUNC(STATIC, ERR, void *, NULL, NULL, -H5FA__cache_hdr_deserialize(const void *_image, size_t len, +H5FA__cache_hdr_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_udata, hbool_t H5_ATTR_UNUSED *dirty)) /* Local variables */ @@ -651,7 +651,7 @@ END_FUNC(STATIC) /* end H5FA__cache_dblock_verify_chksum() */ */ BEGIN_FUNC(STATIC, ERR, void *, NULL, NULL, -H5FA__cache_dblock_deserialize(const void *_image, size_t len, +H5FA__cache_dblock_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_udata, hbool_t H5_ATTR_UNUSED *dirty)) /* Local variables */ @@ -1178,7 +1178,7 @@ END_FUNC(STATIC) /* end H5FA__cache_dblk_page_image_len() */ */ BEGIN_FUNC(STATIC, ERR, herr_t, SUCCEED, FAIL, -H5FA__cache_dblk_page_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_UNUSED len, +H5FA__cache_dblk_page_serialize(const H5F_t H5_ATTR_NDEBUG_UNUSED *f, void *_image, size_t H5_ATTR_UNUSED len, void *_thing)) /* Local variables */ @@ -665,14 +665,13 @@ done: *------------------------------------------------------------------------- */ herr_t -H5FS_size(const H5F_t *f, const H5FS_t *fspace, hsize_t *meta_size) +H5FS_size(const H5FS_t *fspace, hsize_t *meta_size) { FUNC_ENTER_NOAPI_NOINIT_NOERR /* * Check arguments. */ - HDassert(f); HDassert(fspace); HDassert(meta_size); diff --git a/src/H5FScache.c b/src/H5FScache.c index cb0abe9..d5f2817 100644 --- a/src/H5FScache.c +++ b/src/H5FScache.c @@ -241,7 +241,7 @@ H5FS__cache_hdr_verify_chksum(const void *_image, size_t len, void H5_ATTR_UNUSE *------------------------------------------------------------------------- */ static void * -H5FS__cache_hdr_deserialize(const void *_image, size_t len, void *_udata, +H5FS__cache_hdr_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_udata, hbool_t H5_ATTR_UNUSED *dirty) { H5FS_t *fspace = NULL; /* Free space header info */ @@ -404,8 +404,8 @@ H5FS__cache_hdr_image_len(const void *_thing, size_t *image_len) */ static herr_t H5FS__cache_hdr_pre_serialize(H5F_t *f, void *_thing, - haddr_t addr, size_t H5_ATTR_UNUSED len, haddr_t *new_addr, size_t *new_len, - unsigned *flags) + haddr_t addr, size_t H5_ATTR_UNUSED len, haddr_t H5_ATTR_NDEBUG_UNUSED *new_addr, + size_t H5_ATTR_NDEBUG_UNUSED *new_len, unsigned *flags) { H5FS_t *fspace = (H5FS_t *)_thing; /* Pointer to the object */ H5AC_ring_t orig_ring = H5AC_RING_INV; /* Original ring value */ @@ -694,7 +694,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5FS__cache_hdr_serialize(const H5F_t *f, void *_image, size_t len, +H5FS__cache_hdr_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_thing) { H5FS_t *fspace = (H5FS_t *)_thing; /* Pointer to the object */ @@ -979,8 +979,8 @@ H5FS__cache_sinfo_verify_chksum(const void *_image, size_t len, void H5_ATTR_UNU *------------------------------------------------------------------------- */ static void * -H5FS__cache_sinfo_deserialize(const void *_image, size_t len, void *_udata, - hbool_t *dirty) +H5FS__cache_sinfo_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_udata, + hbool_t H5_ATTR_NDEBUG_UNUSED *dirty) { H5FS_sinfo_cache_ud_t *udata = (H5FS_sinfo_cache_ud_t *)_udata; /* User data for callback */ H5FS_t *fspace; /* free space manager */ @@ -1025,11 +1025,11 @@ H5FS__cache_sinfo_deserialize(const void *_image, size_t len, void *_udata, /* Check for any serialized sections */ if(fspace->serial_sect_count > 0) { - hsize_t old_tot_sect_count; /* Total section count from header */ - hsize_t old_serial_sect_count; /* Total serializable section count from header */ - hsize_t old_ghost_sect_count; /* Total ghost section count from header */ - hsize_t old_tot_space; /* Total space managed from header */ - unsigned sect_cnt_size; /* The size of the section size counts */ + hsize_t old_tot_sect_count; /* Total section count from header */ + hsize_t H5_ATTR_NDEBUG_UNUSED old_serial_sect_count; /* Total serializable section count from header */ + hsize_t H5_ATTR_NDEBUG_UNUSED old_ghost_sect_count; /* Total ghost section count from header */ + hsize_t H5_ATTR_NDEBUG_UNUSED old_tot_space; /* Total space managed from header */ + unsigned sect_cnt_size; /* The size of the section size counts */ /* Compute the size of the section counts */ sect_cnt_size = H5VM_limit_enc_size((uint64_t)fspace->serial_sect_count); @@ -1141,7 +1141,6 @@ static herr_t H5FS__cache_sinfo_image_len(const void *_thing, size_t *image_len) { const H5FS_sinfo_t *sinfo = (const H5FS_sinfo_t *)_thing; /* Pointer to the object */ - const H5FS_t *fspace; /* Free space header */ FUNC_ENTER_STATIC_NOERR @@ -1149,10 +1148,9 @@ H5FS__cache_sinfo_image_len(const void *_thing, size_t *image_len) HDassert(sinfo); HDassert(sinfo->cache_info.magic == H5C__H5C_CACHE_ENTRY_T_MAGIC); HDassert(sinfo->cache_info.type == H5AC_FSPACE_SINFO); - fspace = sinfo->fspace; - HDassert(fspace); - HDassert(fspace->cache_info.magic == H5C__H5C_CACHE_ENTRY_T_MAGIC); - HDassert(fspace->cache_info.type == H5AC_FSPACE_HDR); + HDassert(sinfo->fspace); + HDassert(sinfo->fspace->cache_info.magic == H5C__H5C_CACHE_ENTRY_T_MAGIC); + HDassert(sinfo->fspace->cache_info.type == H5AC_FSPACE_HDR); HDassert(image_len); /* Set the image length size */ @@ -1180,7 +1178,8 @@ H5FS__cache_sinfo_image_len(const void *_thing, size_t *image_len) */ static herr_t H5FS__cache_sinfo_pre_serialize(H5F_t *f, void *_thing, haddr_t addr, - size_t len, haddr_t *new_addr, size_t *new_len, unsigned *flags) + size_t H5_ATTR_NDEBUG_UNUSED len, haddr_t *new_addr, size_t H5_ATTR_NDEBUG_UNUSED *new_len, + unsigned *flags) { H5FS_sinfo_t *sinfo = (H5FS_sinfo_t *)_thing; /* Pointer to the object */ H5FS_t *fspace; /* Free space header */ @@ -1267,7 +1266,6 @@ H5FS__cache_sinfo_serialize(const H5F_t *f, void *_image, size_t len, void *_thing) { H5FS_sinfo_t *sinfo = (H5FS_sinfo_t *)_thing; /* Pointer to the object */ - H5FS_t *fspace; /* Free space header */ H5FS_iter_ud_t udata; /* User data for callbacks */ uint8_t *image = (uint8_t *)_image; /* Pointer into raw data buffer */ uint8_t *chksum_image = NULL; /* Points to chksum location */ @@ -1283,12 +1281,11 @@ H5FS__cache_sinfo_serialize(const H5F_t *f, void *_image, size_t len, HDassert(sinfo); HDassert(sinfo->cache_info.magic == H5C__H5C_CACHE_ENTRY_T_MAGIC); HDassert(sinfo->cache_info.type == H5AC_FSPACE_SINFO); - fspace = sinfo->fspace; - HDassert(fspace->cache_info.magic == H5C__H5C_CACHE_ENTRY_T_MAGIC); - HDassert(fspace->cache_info.type == H5AC_FSPACE_HDR); - HDassert(fspace->cache_info.is_pinned); - HDassert(fspace->sect_size == len); - HDassert(fspace->sect_cls); + HDassert(sinfo->fspace->cache_info.magic == H5C__H5C_CACHE_ENTRY_T_MAGIC); + HDassert(sinfo->fspace->cache_info.type == H5AC_FSPACE_HDR); + HDassert(sinfo->fspace->cache_info.is_pinned); + HDassert(sinfo->fspace->sect_size == len); + HDassert(sinfo->fspace->sect_cls); /* Magic number */ H5MM_memcpy(image, H5FS_SINFO_MAGIC, (size_t)H5_SIZEOF_MAGIC); @@ -1418,7 +1415,6 @@ static herr_t H5FS__cache_sinfo_free_icr(void *_thing) { H5FS_sinfo_t *sinfo = (H5FS_sinfo_t *)_thing; /* Pointer to the object */ - H5FS_t *fspace; /* Free space header */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1427,10 +1423,9 @@ H5FS__cache_sinfo_free_icr(void *_thing) HDassert(sinfo); HDassert(sinfo->cache_info.magic == H5C__H5C_CACHE_ENTRY_T_BAD_MAGIC); HDassert(sinfo->cache_info.type == H5AC_FSPACE_SINFO); - fspace = sinfo->fspace; - HDassert(fspace->cache_info.magic == H5C__H5C_CACHE_ENTRY_T_MAGIC); - HDassert(fspace->cache_info.type == H5AC_FSPACE_HDR); - HDassert(fspace->cache_info.is_pinned); + HDassert(sinfo->fspace->cache_info.magic == H5C__H5C_CACHE_ENTRY_T_MAGIC); + HDassert(sinfo->fspace->cache_info.type == H5AC_FSPACE_HDR); + HDassert(sinfo->fspace->cache_info.is_pinned); /* Destroy free space info */ if(H5FS__sinfo_dest(sinfo) < 0) diff --git a/src/H5FSprivate.h b/src/H5FSprivate.h index 31fc63c..d2e1f90 100644 --- a/src/H5FSprivate.h +++ b/src/H5FSprivate.h @@ -182,7 +182,7 @@ H5_DLL H5FS_t *H5FS_create(H5F_t *f, haddr_t *fs_addr, const H5FS_create_t *fs_c H5_DLL H5FS_t *H5FS_open(H5F_t *f, haddr_t fs_addr, uint16_t nclasses, const H5FS_section_class_t *classes[], void *cls_init_udata, hsize_t alignment, hsize_t threshold); -H5_DLL herr_t H5FS_size(const H5F_t *f, const H5FS_t *fspace, hsize_t *meta_size); +H5_DLL herr_t H5FS_size(const H5FS_t *fspace, hsize_t *meta_size); H5_DLL herr_t H5FS_delete(H5F_t *f, haddr_t fs_addr); H5_DLL herr_t H5FS_close(H5F_t *f, H5FS_t *fspace); H5_DLL herr_t H5FS_alloc_hdr(H5F_t *f, H5FS_t *fspace, haddr_t *fs_addr); diff --git a/src/H5Fint.c b/src/H5Fint.c index 8b3d927..74189c1 100644 --- a/src/H5Fint.c +++ b/src/H5Fint.c @@ -1509,8 +1509,8 @@ H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id) H5P_genplist_t *a_plist; /*file access property list */ H5F_close_degree_t fc_degree; /*file close degree */ size_t page_buf_size; - unsigned page_buf_min_meta_perc; - unsigned page_buf_min_raw_perc; + unsigned page_buf_min_meta_perc = 0; + unsigned page_buf_min_raw_perc = 0; hbool_t set_flag = FALSE; /*set the status_flags in the superblock */ hbool_t clear = FALSE; /*clear the status_flags */ hbool_t evict_on_close; /* evict on close value from plist */ @@ -3581,78 +3581,6 @@ done: } /* H5F__format_convert() */ -/*--------------------------------------------------------------------------- - * Function: H5F__get_file - * - * Purpose: Utility routine to get file struct for an object - * - * Returns: SUCCESS: A pointer to the H5F_t struct for the file - * associated with the object. - * FAILURE: NULL - * - *--------------------------------------------------------------------------- - */ -H5F_t * -H5F__get_file(void *obj, H5I_type_t type) -{ - H5F_t *ret_value = NULL; /* File pointer */ - H5O_loc_t *oloc = NULL; /* Object location for ID */ - - FUNC_ENTER_PACKAGE - - switch(type) { - case H5I_FILE: - ret_value = (H5F_t *)obj; - break; - - case H5I_GROUP: - oloc = H5G_oloc((H5G_t *)obj); - break; - - case H5I_DATATYPE: - oloc = H5T_oloc((H5T_t *)obj); - break; - - case H5I_DATASET: - oloc = H5D_oloc((H5D_t *)obj); - break; - - case H5I_ATTR: - oloc = H5A_oloc((H5A_t *)obj); - break; - - case H5I_MAP: - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "maps not supported in native VOL connector") - - case H5I_UNINIT: - case H5I_BADID: - case H5I_DATASPACE: - case H5I_VFL: - case H5I_VOL: - case H5I_GENPROP_CLS: - case H5I_GENPROP_LST: - case H5I_ERROR_CLASS: - case H5I_ERROR_MSG: - case H5I_ERROR_STACK: - case H5I_SPACE_SEL_ITER: - case H5I_NTYPES: - default: - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file or file object") - } /* end switch */ - - /* Set return value for objects (not files) */ - if(oloc) - ret_value = oloc->file; - - /* Couldn't find a file struct */ - if(!ret_value) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "object is not associated with a file") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* H5F__get_file */ - - /*------------------------------------------------------------------------- * Function: H5F_get_file_id * diff --git a/src/H5Fpkg.h b/src/H5Fpkg.h index 6e2c994..b85305e 100644 --- a/src/H5Fpkg.h +++ b/src/H5Fpkg.h @@ -411,7 +411,6 @@ H5_DLL herr_t H5F__format_convert(H5F_t *f); H5_DLL herr_t H5F__start_swmr_write(H5F_t *f); H5_DLL herr_t H5F__close(H5F_t *f); H5_DLL herr_t H5F__set_libver_bounds(H5F_t *f, H5F_libver_t low, H5F_libver_t high); -H5_DLL H5F_t *H5F__get_file(void *obj, H5I_type_t type); H5_DLL herr_t H5F__get_cont_info(const H5F_t *f, H5VL_file_cont_info_t *info); /* File mount related routines */ diff --git a/src/H5Fsuper_cache.c b/src/H5Fsuper_cache.c index 125d6cf..f95f13d 100644 --- a/src/H5Fsuper_cache.c +++ b/src/H5Fsuper_cache.c @@ -344,7 +344,7 @@ H5F__cache_superblock_get_initial_load_size(void H5_ATTR_UNUSED *_udata, size_t *------------------------------------------------------------------------- */ static herr_t -H5F__cache_superblock_get_final_load_size(const void *_image, size_t image_len, +H5F__cache_superblock_get_final_load_size(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED image_len, void *_udata, size_t *actual_len) { const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */ @@ -434,7 +434,7 @@ H5F__cache_superblock_verify_chksum(const void *_image, size_t len, void *_udata *------------------------------------------------------------------------- */ static void * -H5F__cache_superblock_deserialize(const void *_image, size_t len, void *_udata, +H5F__cache_superblock_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_udata, hbool_t H5_ATTR_UNUSED *dirty) { H5F_super_t *sblock = NULL; /* File's superblock */ @@ -867,7 +867,7 @@ H5F__cache_drvrinfo_get_initial_load_size(void H5_ATTR_UNUSED *_udata, size_t *i *------------------------------------------------------------------------- */ static herr_t -H5F__cache_drvrinfo_get_final_load_size(const void *_image, size_t image_len, +H5F__cache_drvrinfo_get_final_load_size(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED image_len, void *_udata, size_t *actual_len) { const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */ @@ -911,7 +911,7 @@ done: *------------------------------------------------------------------------- */ static void * -H5F__cache_drvrinfo_deserialize(const void *_image, size_t len, void *_udata, +H5F__cache_drvrinfo_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_udata, hbool_t H5_ATTR_UNUSED *dirty) { H5O_drvinfo_t *drvinfo = NULL; /* Driver info */ @@ -1006,7 +1006,7 @@ H5F__cache_drvrinfo_image_len(const void *_thing, size_t *image_len) *------------------------------------------------------------------------- */ static herr_t -H5F__cache_drvrinfo_serialize(const H5F_t *f, void *_image, size_t len, +H5F__cache_drvrinfo_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_thing) { H5O_drvinfo_t *drvinfo = (H5O_drvinfo_t *)_thing; /* Pointer to the object */ @@ -341,7 +341,7 @@ H5Gcreate2(hid_t loc_id, const char *name, hid_t lcpl_id, hid_t gcpl_id, hid_t gapl_id) { void *grp = NULL; /* Structure for new group */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -436,7 +436,7 @@ hid_t H5Gcreate_anon(hid_t loc_id, hid_t gcpl_id, hid_t gapl_id) { void *grp = NULL; /* Structure for new group */ - H5VL_object_t *vol_obj = NULL; /* Object token for loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object for loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -498,8 +498,8 @@ done: hid_t H5Gopen2(hid_t loc_id, const char *name, hid_t gapl_id) { - void *grp = NULL; /* Group opened */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *grp = NULL; /* Group opened */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ diff --git a/src/H5Gdeprec.c b/src/H5Gdeprec.c index 830b0eb..126456b 100644 --- a/src/H5Gdeprec.c +++ b/src/H5Gdeprec.c @@ -173,7 +173,7 @@ hid_t H5Gcreate1(hid_t loc_id, const char *name, size_t size_hint) { void *grp = NULL; /* New group created */ - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; hid_t tmp_gcpl = H5I_INVALID_HID; /* Temporary group creation property list */ hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -269,7 +269,7 @@ hid_t H5Gopen1(hid_t loc_id, const char *name) { void *grp = NULL; /* Group opened */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -334,10 +334,10 @@ H5Glink(hid_t cur_loc_id, H5G_link_t type, const char *cur_name, const char *new /* Create link */ if(type == H5L_TYPE_HARD) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params1; H5VL_loc_params_t loc_params2; - H5VL_object_t tmp_vol_obj; /* Temporary object token of */ + H5VL_object_t tmp_vol_obj; /* Temporary object */ loc_params1.type = H5VL_OBJECT_BY_NAME; loc_params1.obj_type = H5I_get_type(cur_loc_id); @@ -362,7 +362,7 @@ H5Glink(hid_t cur_loc_id, H5G_link_t type, const char *cur_name, const char *new HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to create link") } /* end if */ else if(type == H5L_TYPE_SOFT) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; loc_params.type = H5VL_OBJECT_BY_NAME; @@ -416,8 +416,8 @@ H5Glink2(hid_t cur_loc_id, const char *cur_name, H5G_link_t type, /* Create the appropriate kind of link */ if(type == H5L_TYPE_HARD) { - H5VL_object_t *vol_obj1; /* Object token of loc_id */ - H5VL_object_t *vol_obj2; /* Object token of loc_id */ + H5VL_object_t *vol_obj1; /* Object of loc_id */ + H5VL_object_t *vol_obj2; /* Object of loc_id */ H5VL_loc_params_t loc_params1; H5VL_loc_params_t loc_params2; @@ -443,7 +443,7 @@ H5Glink2(hid_t cur_loc_id, const char *cur_name, H5G_link_t type, HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to create link") } /* end if */ else if(type == H5L_TYPE_SOFT) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; /* Soft links only need one location, the new_loc_id, but it's possible that @@ -483,7 +483,7 @@ done: herr_t H5Gmove(hid_t src_loc_id, const char *src_name, const char *dst_name) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params1; H5VL_loc_params_t loc_params2; herr_t ret_value = SUCCEED; /* Return value */ @@ -529,9 +529,9 @@ herr_t H5Gmove2(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name) { - H5VL_object_t *vol_obj1 = NULL; /* Object token of src_id */ + H5VL_object_t *vol_obj1 = NULL; /* Object of src_id */ H5VL_loc_params_t loc_params1; - H5VL_object_t *vol_obj2 = NULL; /* Object token of dst_id */ + H5VL_object_t *vol_obj2 = NULL; /* Object of dst_id */ H5VL_loc_params_t loc_params2; herr_t ret_value = SUCCEED; /* Return value */ @@ -583,7 +583,7 @@ done: herr_t H5Gunlink(hid_t loc_id, const char *name) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -627,7 +627,7 @@ done: herr_t H5Gget_linkval(hid_t loc_id, const char *name, size_t size, char *buf/*out*/) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -680,7 +680,7 @@ done: herr_t H5Gset_comment(hid_t loc_id, const char *name, const char *comment) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -739,7 +739,7 @@ done: int H5Gget_comment(hid_t loc_id, const char *name, size_t bufsize, char *buf) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; ssize_t op_ret; /* Return value from operation */ int ret_value; /* Return value */ @@ -806,7 +806,7 @@ herr_t H5Giterate(hid_t loc_id, const char *name, int *idx_p, H5G_iterate_t op, void *op_data) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; H5G_link_iterate_t lnk_op; /* Link operator */ hsize_t last_obj; /* Index of last object looked at */ @@ -874,7 +874,7 @@ done: herr_t H5Gget_num_objs(hid_t loc_id, hsize_t *num_objs) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5I_type_t id_type; /* Type of ID */ H5VL_loc_params_t loc_params; H5G_info_t grp_info; /* Group information */ @@ -931,7 +931,7 @@ herr_t H5Gget_objinfo(hid_t loc_id, const char *name, hbool_t follow_link, H5G_stat_t *statbuf/*out*/) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -1003,38 +1003,45 @@ H5G__get_objinfo_cb(H5G_loc_t H5_ATTR_UNUSED *grp_loc/*in*/, const char *name, c /* Info for soft and UD links is gotten by H5L_get_info. If we have * a hard link, follow it and get info on the object */ - if (udata->follow_link || !lnk || (lnk->type == H5L_TYPE_HARD)) { - H5O_info_t oinfo; /* Object information */ + if(udata->follow_link || !lnk || (lnk->type == H5L_TYPE_HARD)) { + H5O_info2_t dm_info; /* Data model information */ + H5O_native_info_t nat_info; /* Native information */ + haddr_t obj_addr; /* Address of object */ - /* Go retrieve the object information */ + /* Go retrieve the data model & native object information */ /* (don't need index & heap info) */ HDassert(obj_loc); - if (H5O_get_info(obj_loc->oloc, &oinfo, H5O_INFO_BASIC|H5O_INFO_TIME|H5O_INFO_HDR) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to get object info"); + if(H5O_get_info(obj_loc->oloc, &dm_info, H5O_INFO_BASIC | H5O_INFO_TIME) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to get data model object info") + if(H5O_get_native_info(obj_loc->oloc, &nat_info, H5O_INFO_HDR) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to get native object info") /* Get mapped object type */ - statbuf->type = H5G_map_obj_type(oinfo.type); + statbuf->type = H5G_map_obj_type(dm_info.type); /* Get object number (i.e. address) for object */ - statbuf->objno[0] = (unsigned long)(oinfo.addr); + if(H5VL_native_token_to_addr(obj_loc->oloc->file, H5I_FILE, dm_info.token, &obj_addr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") + + statbuf->objno[0] = (unsigned long)(obj_addr); #if H5_SIZEOF_UINT64_T > H5_SIZEOF_LONG - statbuf->objno[1] = (unsigned long)(oinfo.addr >> 8 * sizeof(long)); + statbuf->objno[1] = (unsigned long)(obj_addr >> 8 * sizeof(long)); #else statbuf->objno[1] = 0; #endif /* Get # of hard links pointing to object */ - statbuf->nlink = oinfo.rc; + statbuf->nlink = dm_info.rc; /* Get modification time for object */ - statbuf->mtime = oinfo.ctime; + statbuf->mtime = dm_info.ctime; /* Retrieve the object header information */ - statbuf->ohdr.size = oinfo.hdr.space.total; - statbuf->ohdr.free = oinfo.hdr.space.free; - statbuf->ohdr.nmesgs = oinfo.hdr.nmesgs; - statbuf->ohdr.nchunks = oinfo.hdr.nchunks; - } - } + statbuf->ohdr.size = nat_info.hdr.space.total; + statbuf->ohdr.free = nat_info.hdr.space.free; + statbuf->ohdr.nmesgs = nat_info.hdr.nmesgs; + statbuf->ohdr.nchunks = nat_info.hdr.nchunks; + } /* end if */ + } /* end if */ done: /* Indicate that this callback didn't take ownership of the group * @@ -1089,7 +1096,7 @@ H5G__get_objinfo(const H5G_loc_t *loc, const char *name, hbool_t follow_link, /* If we're pointing at a soft or UD link, get the real link length and type */ if (statbuf && follow_link == 0) { - H5L_info_t linfo; /* Link information buffer */ + H5L_info2_t linfo; /* Link information buffer */ herr_t ret; /* Get information about link to the object. If this fails, e.g. @@ -1142,7 +1149,7 @@ done: ssize_t H5Gget_objname_by_idx(hid_t loc_id, hsize_t idx, char *name, size_t size) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; ssize_t ret_value; /* Return value */ @@ -1193,10 +1200,9 @@ done: H5G_obj_t H5Gget_objtype_by_idx(hid_t loc_id, hsize_t idx) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; - H5O_info_t oinfo; /* Object info (contains object type) */ - unsigned fields; /* Which fields in object info to populate */ + H5O_info2_t oinfo; /* Object info (contains object type) */ H5G_obj_t ret_value; /* Return value */ FUNC_ENTER_API(H5G_UNKNOWN) @@ -1216,8 +1222,7 @@ H5Gget_objtype_by_idx(hid_t loc_id, hsize_t idx) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5G_UNKNOWN, "invalid location identifier") /* Retrieve the object's basic information (which includes its type) */ - fields = H5O_INFO_BASIC; - if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, &oinfo, fields) < 0) + if(H5VL_object_get(vol_obj, &loc_params, H5VL_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &oinfo, H5O_INFO_BASIC) < 0) HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, H5G_UNKNOWN, "can't get object info") /* Map to group object type */ diff --git a/src/H5Gint.c b/src/H5Gint.c index 049c696..e0b8bd7 100644 --- a/src/H5Gint.c +++ b/src/H5Gint.c @@ -58,6 +58,7 @@ typedef struct { /* User data for application-style iteration over links in a group */ typedef struct { hid_t gid; /* The group ID for the application callback */ + H5O_loc_t *link_loc; /* The object location for the link */ H5G_link_iterate_t lnk_op; /* Application callback */ void *op_data; /* Application's op data */ } H5G_iter_appcall_ud_t; @@ -72,7 +73,7 @@ typedef struct { char *path; /* Path name of the link */ size_t curr_path_len; /* Current length of the path in the buffer */ size_t path_buf_size; /* Size of path buffer */ - H5L_iterate_t op; /* Application callback */ + H5L_iterate2_t op; /* Application callback */ void *op_data; /* Application's op data */ } H5G_iter_visit_ud_t; @@ -752,10 +753,10 @@ H5G_iterate_cb(const H5O_link_t *lnk, void *_udata) case H5G_LINK_OP_NEW: { - H5L_info_t info; /* Link info */ + H5L_info2_t info; /* Link info */ /* Retrieve the info for the link */ - if(H5G_link_to_info(lnk, &info) < 0) + if(H5G_link_to_info(udata->link_loc, lnk, &info) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5_ITER_ERROR, "unable to get info for link") /* Make the application callback */ @@ -812,6 +813,7 @@ H5G_iterate(H5G_loc_t *loc, const char *group_name, /* Set up user data for callback */ udata.gid = gid; + udata.link_loc = &grp->oloc; udata.lnk_op = *lnk_op; udata.op_data = op_data; @@ -872,7 +874,7 @@ static herr_t H5G_visit_cb(const H5O_link_t *lnk, void *_udata) { H5G_iter_visit_ud_t *udata = (H5G_iter_visit_ud_t *)_udata; /* User data for callback */ - H5L_info_t info; /* Link info */ + H5L_info2_t info; /* Link info */ H5G_loc_t obj_loc; /* Location of object */ H5G_name_t obj_path; /* Object's group hier. path */ H5O_loc_t obj_oloc; /* Object's object location */ @@ -908,7 +910,7 @@ H5G_visit_cb(const H5O_link_t *lnk, void *_udata) udata->curr_path_len += link_name_len; /* Construct the link info from the link message */ - if(H5G_link_to_info(lnk, &info) < 0) + if(H5G_link_to_info(udata->curr_loc->oloc, lnk, &info) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5_ITER_ERROR, "unable to get info for link") /* Make the application callback */ @@ -1044,7 +1046,7 @@ done: */ herr_t H5G_visit(H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, - H5_iter_order_t order, H5L_iterate_t op, void *op_data) + H5_iter_order_t order, H5L_iterate2_t op, void *op_data) { H5G_iter_visit_ud_t udata; /* User data for callback */ H5O_linfo_t linfo; /* Link info message */ diff --git a/src/H5Glink.c b/src/H5Glink.c index 04ccbc5..6c42f1d 100644 --- a/src/H5Glink.c +++ b/src/H5Glink.c @@ -41,6 +41,8 @@ #include "H5MMprivate.h" /* Memory management */ #include "H5Ppublic.h" /* Property Lists */ +#include "H5VLnative_private.h" /* Native VOL connector */ + /****************/ /* Local Macros */ @@ -290,13 +292,14 @@ done: *------------------------------------------------------------------------- */ herr_t -H5G_link_to_info(const H5O_link_t *lnk, H5L_info_t *info) +H5G_link_to_info(const H5O_loc_t *link_loc, const H5O_link_t *lnk, H5L_info2_t *info) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) /* Sanity check */ + HDassert(link_loc); HDassert(lnk); /* Get information from the link */ @@ -308,7 +311,9 @@ H5G_link_to_info(const H5O_link_t *lnk, H5L_info_t *info) switch(lnk->type) { case H5L_TYPE_HARD: - info->u.address = lnk->u.hard.addr; + /* Serialize the address into a VOL token */ + if(H5VL_native_addr_to_token(link_loc->file, H5I_FILE, lnk->u.hard.addr, &info->u.token) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTSERIALIZE, FAIL, "can't serialize address into object token") break; case H5L_TYPE_SOFT: diff --git a/src/H5Gloc.c b/src/H5Gloc.c index 56608e2..4d89abb 100644 --- a/src/H5Gloc.c +++ b/src/H5Gloc.c @@ -73,15 +73,24 @@ typedef struct { H5G_loc_t *loc; /* Group location to set */ } H5G_loc_fbi_t; -/* User data for getting an object's info in a group */ +/* User data for getting an object's data model info in a group */ typedef struct { /* downward */ - unsigned fields; /* which fields in H5O_info_t struct to fill in */ + unsigned fields; /* which fields in H5O_info2_t struct to fill in */ /* upward */ - H5O_info_t *oinfo; /* Object information to retrieve */ + H5O_info2_t *oinfo; /* Object information to retrieve */ } H5G_loc_info_t; +/* User data for getting an object's native info in a group */ +typedef struct { + /* downward */ + unsigned fields; /* which fields in H5O_native_info_t struct to fill in */ + + /* upward */ + H5O_native_info_t *oinfo; /* Object information to retrieve */ +} H5G_loc_native_info_t; + /* User data for setting an object's comment in a group */ typedef struct { /* downward */ @@ -116,6 +125,8 @@ static herr_t H5G__loc_addr_cb(H5G_loc_t *grp_loc, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata, H5G_own_loc_t *own_loc); static herr_t H5G__loc_info_cb(H5G_loc_t *grp_loc, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata, H5G_own_loc_t *own_loc); +static herr_t H5G__loc_native_info_cb(H5G_loc_t *grp_loc, const char *name, + const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata, H5G_own_loc_t *own_loc); static herr_t H5G__loc_set_comment_cb(H5G_loc_t *grp_loc, const char *name, const H5O_link_t *lnk, H5G_loc_t *obj_loc, void *_udata, H5G_own_loc_t *own_loc); @@ -762,7 +773,7 @@ done: /*------------------------------------------------------------------------- * Function: H5G__loc_info_cb * - * Purpose: Callback for retrieving object info for an object in a group + * Purpose: Callback for retrieving data model info for an object in a group * * Return: Non-negative on success/Negative on failure * @@ -800,7 +811,7 @@ done: /*------------------------------------------------------------------------- * Function: H5G_loc_info * - * Purpose: Retrieve the information for an object from a group location + * Purpose: Retrieve the data model information for an object from a group location * and path to that object * * Return: Non-negative on success/Negative on failure @@ -811,7 +822,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5G_loc_info(const H5G_loc_t *loc, const char *name, H5O_info_t *oinfo/*out*/, unsigned fields) +H5G_loc_info(const H5G_loc_t *loc, const char *name, H5O_info2_t *oinfo/*out*/, unsigned fields) { H5G_loc_info_t udata; /* User data for traversal callback */ herr_t ret_value = SUCCEED; /* Return value */ @@ -837,6 +848,84 @@ done: /*------------------------------------------------------------------------- + * Function: H5G__loc_native_info_cb + * + * Purpose: Callback for retrieving native info for an object in a group + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Quincey Koziol + * Thursday, November 23, 2006 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5G__loc_native_info_cb(H5G_loc_t H5_ATTR_UNUSED *grp_loc/*in*/, const char H5_ATTR_UNUSED *name, const H5O_link_t H5_ATTR_UNUSED *lnk, + H5G_loc_t *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/) +{ + H5G_loc_native_info_t *udata = (H5G_loc_native_info_t *)_udata; /* User data passed in */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Check if the name in this group resolved to a valid link */ + if(obj_loc == NULL) + HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "name doesn't exist") + + /* Query object information */ + if(H5O_get_native_info(obj_loc->oloc, udata->oinfo, udata->fields) < 0) + HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't get object info") + +done: + /* Indicate that this callback didn't take ownership of the group * + * location for the object */ + *own_loc = H5G_OWN_NONE; + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5G__loc_native_info_cb() */ + + +/*------------------------------------------------------------------------- + * Function: H5G_loc_native_info + * + * Purpose: Retrieve the native information for an object from a group location + * and path to that object + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Quincey Koziol + * Thursday, November 23, 2006 + * + *------------------------------------------------------------------------- + */ +herr_t +H5G_loc_native_info(const H5G_loc_t *loc, const char *name, H5O_native_info_t *oinfo/*out*/, + unsigned fields) +{ + H5G_loc_native_info_t udata; /* User data for traversal callback */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Check args. */ + HDassert(loc); + HDassert(name && *name); + HDassert(oinfo); + + /* Set up user data for locating object */ + udata.fields = fields; + udata.oinfo = oinfo; + + /* Traverse group hierarchy to locate object */ + if(H5G_traverse(loc, name, H5G_TARGET_NORMAL, H5G__loc_native_info_cb, &udata) < 0) + HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't find object") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5G_loc_native_info() */ + + +/*------------------------------------------------------------------------- * Function: H5G__loc_set_comment_cb * * Purpose: Callback for (re)setting object comment for an object in a group diff --git a/src/H5Gname.c b/src/H5Gname.c index ab8ddf4..4b0f04c 100644 --- a/src/H5Gname.c +++ b/src/H5Gname.c @@ -42,6 +42,8 @@ #include "H5Lprivate.h" /* Links */ #include "H5MMprivate.h" /* Memory wrappers */ +#include "H5VLnative_private.h" /* Native VOL connector */ + /****************/ /* Local Macros */ @@ -1204,7 +1206,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5G_get_name_by_addr_cb(hid_t gid, const char *path, const H5L_info_t *linfo, +H5G_get_name_by_addr_cb(hid_t gid, const char *path, const H5L_info2_t *linfo, void *_udata) { H5G_gnba_iter_t *udata = (H5G_gnba_iter_t *)_udata; /* User data for iteration */ @@ -1212,7 +1214,7 @@ H5G_get_name_by_addr_cb(hid_t gid, const char *path, const H5L_info_t *linfo, H5G_name_t obj_path; /* Object's group hier. path */ H5O_loc_t obj_oloc; /* Object's object location */ hbool_t obj_found = FALSE; /* Object at 'path' found */ - herr_t ret_value = H5_ITER_CONT; /* Return value */ + herr_t ret_value = H5_ITER_CONT; /* Return value */ FUNC_ENTER_NOAPI_NOINIT @@ -1223,31 +1225,39 @@ H5G_get_name_by_addr_cb(hid_t gid, const char *path, const H5L_info_t *linfo, HDassert(udata->path == NULL); /* Check for hard link with correct address */ - if(linfo->type == H5L_TYPE_HARD && udata->loc->addr == linfo->u.address) { - H5G_loc_t grp_loc; /* Location of group */ - - /* Get group's location */ - if(H5G_loc(gid, &grp_loc) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5_ITER_ERROR, "bad group location") - - /* Set up opened object location to fill in */ - obj_loc.oloc = &obj_oloc; - obj_loc.path = &obj_path; - H5G_loc_reset(&obj_loc); - - /* Find the object */ - if(H5G_loc_find(&grp_loc, path, &obj_loc/*out*/) < 0) - HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, H5_ITER_ERROR, "object not found") - obj_found = TRUE; - - /* Check for object in same file (handles mounted files) */ - /* (re-verify address, in case we traversed a file mount) */ - if(udata->loc->addr == obj_loc.oloc->addr && udata->loc->file == obj_loc.oloc->file) { - if(NULL == (udata->path = H5MM_strdup(path))) - HGOTO_ERROR(H5E_SYM, H5E_CANTALLOC, H5_ITER_ERROR, "can't duplicate path string") - - /* We found a match so we return immediately */ - HGOTO_DONE(H5_ITER_STOP) + if(linfo->type == H5L_TYPE_HARD) { + haddr_t link_addr; + + /* Retrieve hard link address from VOL token */ + if(H5VL_native_token_to_addr(udata->loc->file, H5I_FILE, linfo->u.token, &link_addr) < 0) + HGOTO_ERROR(H5E_SYM, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") + + if(udata->loc->addr == link_addr) { + H5G_loc_t grp_loc; /* Location of group */ + + /* Get group's location */ + if(H5G_loc(gid, &grp_loc) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5_ITER_ERROR, "bad group location") + + /* Set up opened object location to fill in */ + obj_loc.oloc = &obj_oloc; + obj_loc.path = &obj_path; + H5G_loc_reset(&obj_loc); + + /* Find the object */ + if(H5G_loc_find(&grp_loc, path, &obj_loc/*out*/) < 0) + HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, H5_ITER_ERROR, "object not found") + obj_found = TRUE; + + /* Check for object in same file (handles mounted files) */ + /* (re-verify address, in case we traversed a file mount) */ + if(udata->loc->addr == obj_loc.oloc->addr && udata->loc->file == obj_loc.oloc->file) { + if(NULL == (udata->path = H5MM_strdup(path))) + HGOTO_ERROR(H5E_SYM, H5E_CANTALLOC, H5_ITER_ERROR, "can't duplicate path string") + + /* We found a match so we return immediately */ + HGOTO_DONE(H5_ITER_STOP) + } /* end if */ } /* end if */ } /* end if */ diff --git a/src/H5Gnode.c b/src/H5Gnode.c index d11d7a0..35b90f3 100644 --- a/src/H5Gnode.c +++ b/src/H5Gnode.c @@ -762,12 +762,11 @@ done: *------------------------------------------------------------------------- */ static H5B_ins_t -H5G_node_remove(H5F_t *f, haddr_t addr, void *_lt_key/*in,out*/, +H5G_node_remove(H5F_t *f, haddr_t addr, void H5_ATTR_NDEBUG_UNUSED *_lt_key/*in,out*/, hbool_t H5_ATTR_UNUSED *lt_key_changed/*out*/, void *_udata/*in,out*/, void *_rt_key/*in,out*/, hbool_t *rt_key_changed/*out*/) { - H5G_node_key_t *lt_key = (H5G_node_key_t *)_lt_key; H5G_node_key_t *rt_key = (H5G_node_key_t *)_rt_key; H5G_bt_rm_t *udata = (H5G_bt_rm_t *)_udata; H5G_node_t *sn = NULL; @@ -781,7 +780,7 @@ H5G_node_remove(H5F_t *f, haddr_t addr, void *_lt_key/*in,out*/, /* Check arguments */ HDassert(f); HDassert(H5F_addr_defined(addr)); - HDassert(lt_key); + HDassert((H5G_node_key_t *)_lt_key); HDassert(rt_key); HDassert(udata && udata->common.heap); diff --git a/src/H5Gprivate.h b/src/H5Gprivate.h index b735dbd..19b120c 100644 --- a/src/H5Gprivate.h +++ b/src/H5Gprivate.h @@ -174,7 +174,7 @@ typedef struct { #ifndef H5_NO_DEPRECATED_SYMBOLS H5G_iterate_t op_old; /* "Old" application callback for each link */ #endif /* H5_NO_DEPRECATED_SYMBOLS */ - H5L_iterate_t op_new; /* "New" application callback for each link */ + H5L_iterate2_t op_new; /* "New" application callback for each link */ } op_func; } H5G_link_iterate_t; @@ -214,12 +214,12 @@ H5_DLL herr_t H5G_iterate(H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t skip, hsize_t *last_lnk, const H5G_link_iterate_t *lnk_op, void *op_data); H5_DLL herr_t H5G_visit(H5G_loc_t *loc, const char *group_name, - H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op, void *op_data); + H5_index_t idx_type, H5_iter_order_t order, H5L_iterate2_t op, void *op_data); /* * Functions that understand links in groups */ -H5_DLL herr_t H5G_link_to_info(const struct H5O_link_t *lnk, H5L_info_t *linfo); +H5_DLL herr_t H5G_link_to_info(const struct H5O_loc_t *link_loc, const struct H5O_link_t *lnk, H5L_info2_t *linfo); /* * Functions that understand group objects @@ -279,7 +279,9 @@ H5_DLL herr_t H5G_loc_find_by_idx(const H5G_loc_t *loc, const char *group_name, H5G_loc_t *obj_loc/*out*/); H5_DLL htri_t H5G_loc_exists(const H5G_loc_t *loc, const char *name); H5_DLL herr_t H5G_loc_info(const H5G_loc_t *loc, const char *name, - H5O_info_t *oinfo/*out*/, unsigned fields); + H5O_info2_t *oinfo/*out*/, unsigned fields); +H5_DLL herr_t H5G_loc_native_info(const H5G_loc_t *loc, const char *name, + H5O_native_info_t *oinfo/*out*/, unsigned fields); H5_DLL herr_t H5G_loc_set_comment(const H5G_loc_t *loc, const char *name, const char *comment); H5_DLL ssize_t H5G_loc_get_comment(const H5G_loc_t *loc, const char *name, diff --git a/src/H5Gtraverse.c b/src/H5Gtraverse.c index 492b5b9..7482e27 100644 --- a/src/H5Gtraverse.c +++ b/src/H5Gtraverse.c @@ -201,11 +201,15 @@ H5G__traverse_ud(const H5G_loc_t *grp_loc/*in,out*/, const H5O_link_t *lnk, HGOTO_ERROR(H5E_SYM, H5E_CANTREGISTER, FAIL, "unable to register group") /* User-defined callback function */ +#ifndef H5_NO_DEPRECATED_SYMBOLS /* (Backwardly compatible with v0 H5L_class_t traverssal callback) */ if(link_class->version == H5L_LINK_CLASS_T_VERS_0) cb_return = (((const H5L_class_0_t *)link_class)->trav_func)(lnk->name, cur_grp, lnk->u.ud.udata, lnk->u.ud.size, H5CX_get_lapl()); else cb_return = (link_class->trav_func)(lnk->name, cur_grp, lnk->u.ud.udata, lnk->u.ud.size, H5CX_get_lapl(), H5CX_get_dxpl()); +#else /* H5_NO_DEPRECATED_SYMBOLS */ + cb_return = (link_class->trav_func)(lnk->name, cur_grp, lnk->u.ud.udata, lnk->u.ud.size, H5CX_get_lapl(), H5CX_get_dxpl()); +#endif /* H5_NO_DEPRECATED_SYMBOLS */ /* Check for failing to locate the object */ if(cb_return < 0) { diff --git a/src/H5HFcache.c b/src/H5HFcache.c index 2d1c1f2..4a2ff91 100644 --- a/src/H5HFcache.c +++ b/src/H5HFcache.c @@ -403,7 +403,7 @@ H5HF__cache_hdr_get_initial_load_size(void *_udata, size_t *image_len) *------------------------------------------------------------------------- */ static herr_t -H5HF__cache_hdr_get_final_load_size(const void *_image, size_t image_len, +H5HF__cache_hdr_get_final_load_size(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED image_len, void *_udata, size_t *actual_len) { H5HF_hdr_t hdr; /* Temporary fractal heap header */ @@ -749,7 +749,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5HF__cache_hdr_serialize(const H5F_t *f, void *_image, size_t len, +H5HF__cache_hdr_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_thing) { H5HF_hdr_t *hdr = (H5HF_hdr_t *)_thing; /* Fractal heap info */ @@ -979,8 +979,8 @@ H5HF__cache_iblock_verify_chksum(const void *_image, size_t len, void H5_ATTR_UN *------------------------------------------------------------------------- */ static void * -H5HF__cache_iblock_deserialize(const void *_image, size_t len, void *_udata, - hbool_t H5_ATTR_UNUSED *dirty) +H5HF__cache_iblock_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, + void *_udata, hbool_t H5_ATTR_UNUSED *dirty) { H5HF_hdr_t *hdr; /* Shared fractal heap information */ H5HF_iblock_cache_ud_t *udata = (H5HF_iblock_cache_ud_t *)_udata; /* User data for callback */ @@ -1326,7 +1326,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5HF__cache_iblock_serialize(const H5F_t *f, void *_image, size_t len, +H5HF__cache_iblock_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_thing) { H5HF_hdr_t *hdr; /* Shared fractal heap information */ @@ -1471,8 +1471,8 @@ H5HF__cache_iblock_notify(H5AC_notify_action_t action, void *_thing) else { /* if this is a child iblock, verify that the pointers are */ /* either uninitialized or set up correctly. */ - H5HF_indirect_t *par_iblock = iblock->parent; - unsigned indir_idx; /* Index in parent's child iblock pointer array */ + H5HF_indirect_t H5_ATTR_NDEBUG_UNUSED *par_iblock = iblock->parent; + unsigned H5_ATTR_NDEBUG_UNUSED indir_idx; /* Index in parent's child iblock pointer array */ /* Sanity check */ HDassert(par_iblock->child_iblocks); @@ -2438,8 +2438,8 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5HF__cache_dblock_serialize(const H5F_t *f, void *image, size_t len, - void *_thing) +H5HF__cache_dblock_serialize(const H5F_t H5_ATTR_NDEBUG_UNUSED *f, void *image, + size_t H5_ATTR_NDEBUG_UNUSED len, void *_thing) { H5HF_direct_t *dblock = (H5HF_direct_t *)_thing; /* Direct block info */ herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5HFsection.c b/src/H5HFsection.c index f5ac8e5..c11bc34 100644 --- a/src/H5HFsection.c +++ b/src/H5HFsection.c @@ -1185,9 +1185,9 @@ H5HF__sect_single_valid(const H5FS_section_class_t H5_ATTR_UNUSED *cls, const H5 H5HF_indirect_t *iblock; /* Indirect block that section's direct block resides in */ haddr_t dblock_addr; /* Direct block address */ size_t dblock_size; /* Direct block size */ - size_t dblock_overhead; /* Direct block's overhead */ unsigned dblock_status = 0; /* Direct block's status in the metadata cache */ - herr_t status; /* Generic status value */ + size_t H5_ATTR_NDEBUG_UNUSED dblock_overhead; /* Direct block's overhead */ + herr_t H5_ATTR_NDEBUG_UNUSED status; /* Generic status value */ /* Sanity check settings for section's direct block's parent */ iblock = sect->u.single.parent; @@ -2038,7 +2038,7 @@ H5HF__sect_row_valid(const H5FS_section_class_t *cls, const H5FS_section_info_t const H5HF_hdr_t *hdr; /* Fractal heap header */ const H5HF_free_section_t *sect = (const H5HF_free_section_t *)_sect; /* Pointer to section to check */ const H5HF_free_section_t *indir_sect; /* Pointer to underlying indirect section */ - unsigned indir_idx; /* Index of row in underlying indirect section's row array */ + unsigned H5_ATTR_NDEBUG_UNUSED indir_idx; /* Index of row in underlying indirect section's row array */ FUNC_ENTER_STATIC_NOERR @@ -4125,7 +4125,7 @@ H5HF_sect_indirect_valid(const H5HF_hdr_t *hdr, const H5HF_free_section_t *sect) dir_nrows = (max_dir_row - start_row) + 1; HDassert(dir_nrows == sect->u.indirect.dir_nrows); for(u = 0; u < dir_nrows; u++) { - const H5HF_free_section_t *tmp_row_sect; /* Pointer to row section */ + const H5HF_free_section_t H5_ATTR_NDEBUG_UNUSED *tmp_row_sect; /* Pointer to row section */ tmp_row_sect = sect->u.indirect.dir_rows[u]; HDassert(tmp_row_sect->sect_info.type == H5HF_FSPACE_SECT_FIRST_ROW @@ -4133,7 +4133,7 @@ H5HF_sect_indirect_valid(const H5HF_hdr_t *hdr, const H5HF_free_section_t *sect) HDassert(tmp_row_sect->u.row.under == sect); HDassert(tmp_row_sect->u.row.row == (start_row + u)); if(u > 0) { - const H5HF_free_section_t *tmp_row_sect2; /* Pointer to row section */ + const H5HF_free_section_t H5_ATTR_NDEBUG_UNUSED *tmp_row_sect2; /* Pointer to row section */ tmp_row_sect2 = sect->u.indirect.dir_rows[u - 1]; HDassert(tmp_row_sect2->u.row.row < tmp_row_sect->u.row.row); @@ -4160,7 +4160,7 @@ H5HF_sect_indirect_valid(const H5HF_hdr_t *hdr, const H5HF_free_section_t *sect) HDassert(tmp_child_sect->sect_info.type == H5HF_FSPACE_SECT_INDIRECT); HDassert(tmp_child_sect->u.indirect.parent == sect); if(u > 0) { - const H5HF_free_section_t *tmp_child_sect2; /* Pointer to child indirect section */ + const H5HF_free_section_t H5_ATTR_NDEBUG_UNUSED *tmp_child_sect2; /* Pointer to child indirect section */ tmp_child_sect2 = sect->u.indirect.indir_ents[u - 1]; HDassert(H5F_addr_lt(tmp_child_sect2->sect_info.addr, tmp_child_sect->sect_info.addr)); diff --git a/src/H5HFspace.c b/src/H5HFspace.c index 37a0502..ad5ff0f 100644 --- a/src/H5HFspace.c +++ b/src/H5HFspace.c @@ -447,7 +447,7 @@ H5HF__space_size(H5HF_hdr_t *hdr, hsize_t *fs_size) /* Get free space metadata size */ if(hdr->fspace) { - if(H5FS_size(hdr->f, hdr->fspace, fs_size) < 0) + if(H5FS_size(hdr->fspace, fs_size) < 0) HGOTO_ERROR(H5E_FSPACE, H5E_CANTGET, FAIL, "can't retrieve FS meta storage info") } /* end if */ else diff --git a/src/H5HGcache.c b/src/H5HGcache.c index 29e88df..18625cc 100644 --- a/src/H5HGcache.c +++ b/src/H5HGcache.c @@ -202,7 +202,7 @@ H5HG__cache_heap_get_initial_load_size(void H5_ATTR_UNUSED *_udata, size_t *imag *------------------------------------------------------------------------- */ static herr_t -H5HG__cache_heap_get_final_load_size(const void *image, size_t image_len, +H5HG__cache_heap_get_final_load_size(const void *image, size_t H5_ATTR_NDEBUG_UNUSED image_len, void *udata, size_t *actual_len) { H5HG_heap_t heap; /* Global heap */ @@ -432,7 +432,7 @@ H5HG__cache_heap_image_len(const void *_thing, size_t *image_len) *------------------------------------------------------------------------- */ static herr_t -H5HG__cache_heap_serialize(const H5F_t *f, void *image, size_t len, +H5HG__cache_heap_serialize(const H5F_t H5_ATTR_NDEBUG_UNUSED *f, void *image, size_t len, void *_thing) { H5HG_heap_t *heap = (H5HG_heap_t *)_thing; diff --git a/src/H5HLcache.c b/src/H5HLcache.c index 8b04b47..b0ac05f 100644 --- a/src/H5HLcache.c +++ b/src/H5HLcache.c @@ -364,7 +364,7 @@ H5HL__cache_prefix_get_initial_load_size(void H5_ATTR_UNUSED *_udata, size_t *im *------------------------------------------------------------------------- */ static herr_t -H5HL__cache_prefix_get_final_load_size(const void *_image, size_t image_len, +H5HL__cache_prefix_get_final_load_size(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED image_len, void *_udata, size_t *actual_len) { const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */ @@ -415,8 +415,8 @@ done: *------------------------------------------------------------------------- */ static void * -H5HL__cache_prefix_deserialize(const void *_image, size_t len, void *_udata, - hbool_t H5_ATTR_UNUSED *dirty) +H5HL__cache_prefix_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, + void *_udata, hbool_t H5_ATTR_UNUSED *dirty) { H5HL_t *heap = NULL; /* Local heap */ H5HL_prfx_t *prfx = NULL; /* Heap prefix deserialized */ @@ -555,7 +555,7 @@ H5HL__cache_prefix_image_len(const void *_thing, size_t *image_len) *------------------------------------------------------------------------- */ static herr_t -H5HL__cache_prefix_serialize(const H5F_t *f, void *_image, size_t len, +H5HL__cache_prefix_serialize(const H5_ATTR_NDEBUG_UNUSED H5F_t *f, void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_thing) { H5HL_prfx_t *prfx = (H5HL_prfx_t *)_thing; /* Pointer to local heap prefix to query */ @@ -826,8 +826,8 @@ H5HL__cache_datablock_image_len(const void *_thing, size_t *image_len) *------------------------------------------------------------------------- */ static herr_t -H5HL__cache_datablock_serialize(const H5F_t *f, void *image, size_t len, - void *_thing) +H5HL__cache_datablock_serialize(const H5F_t H5_ATTR_NDEBUG_UNUSED *f, void *image, + size_t H5_ATTR_NDEBUG_UNUSED len, void *_thing) { H5HL_t *heap; /* Pointer to the local heap */ H5HL_dblk_t *dblk = (H5HL_dblk_t *)_thing; /* Pointer to the local heap data block */ @@ -2219,7 +2219,7 @@ done: ssize_t H5Iget_name(hid_t id, char *name/*out*/, size_t size) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; ssize_t ret_value; /* Return value */ @@ -2269,7 +2269,7 @@ H5Iget_file_id(hid_t obj_id) /* Call internal function */ if(H5I_FILE == type || H5I_DATATYPE == type || H5I_GROUP == type || H5I_DATASET == type || H5I_ATTR == type) { - H5VL_object_t *vol_obj; /* Object token of obj_id */ + H5VL_object_t *vol_obj; /* Object of obj_id */ /* Get the VOL object */ if(NULL == (vol_obj = H5VL_vol_object(obj_id))) diff --git a/src/H5Itest.c b/src/H5Itest.c index 7415303..07c1965 100644 --- a/src/H5Itest.c +++ b/src/H5Itest.c @@ -78,7 +78,7 @@ ssize_t H5I__get_name_test(hid_t id, char *name/*out*/, size_t size, hbool_t *cached) { - H5VL_object_t *vol_obj; /* Object token of id */ + H5VL_object_t *vol_obj; /* Object of id */ H5G_loc_t loc; /* Object location */ hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ hbool_t vol_wrapper_set = FALSE;/* Whether the VOL object wrapping context was set up */ @@ -34,7 +34,7 @@ #include "H5Oprivate.h" /* File objects */ #include "H5Pprivate.h" /* Property lists */ #include "H5VLprivate.h" /* Virtual Object Layer */ - +#include "H5VLnative_private.h" /* Native VOL */ /****************/ /* Local Macros */ @@ -49,7 +49,7 @@ /* User data for path traversal routine for getting link info by name */ typedef struct { - H5L_info_t *linfo; /* Buffer to return to user */ + H5L_info2_t *linfo; /* Buffer to return to user */ } H5L_trav_gi_t; /* User data for path traversal callback to creating a link */ @@ -93,6 +93,7 @@ typedef struct { void *buf; /* User buffer */ } H5L_trav_gv_t; + /********************/ /* Local Prototypes */ /********************/ @@ -274,11 +275,11 @@ herr_t H5Lmove(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name, hid_t lcpl_id, hid_t lapl_id) { - H5VL_object_t *vol_obj1 = NULL; /* Object token of src_id */ + H5VL_object_t *vol_obj1 = NULL; /* Object of src_id */ H5VL_loc_params_t loc_params1; - H5VL_object_t *vol_obj2 = NULL; /* Object token of dst_id */ + H5VL_object_t *vol_obj2 = NULL; /* Object of dst_id */ H5VL_loc_params_t loc_params2; - H5VL_object_t tmp_vol_obj; /* Temporary object token */ + H5VL_object_t tmp_vol_obj; /* Temporary object */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -364,11 +365,11 @@ herr_t H5Lcopy(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name, hid_t lcpl_id, hid_t lapl_id) { - H5VL_object_t *vol_obj1 = NULL; /* Object token of src_id */ + H5VL_object_t *vol_obj1 = NULL; /* Object of src_id */ H5VL_loc_params_t loc_params1; - H5VL_object_t *vol_obj2 = NULL; /* Object token of dst_id */ + H5VL_object_t *vol_obj2 = NULL; /* Object of dst_id */ H5VL_loc_params_t loc_params2; - H5VL_object_t tmp_vol_obj; /* Temporary object token */ + H5VL_object_t tmp_vol_obj; /* Temporary object */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -458,7 +459,7 @@ herr_t H5Lcreate_soft(const char *link_target, hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -529,9 +530,9 @@ herr_t H5Lcreate_hard(hid_t cur_loc_id, const char *cur_name, hid_t new_loc_id, const char *new_name, hid_t lcpl_id, hid_t lapl_id) { - H5VL_object_t *vol_obj1 = NULL; /* Object token of cur_loc_id */ - H5VL_object_t *vol_obj2 = NULL; /* Object token of new_loc_id */ - H5VL_object_t tmp_vol_obj; /* Temporary object token of */ + H5VL_object_t *vol_obj1 = NULL; /* Object of cur_loc_id */ + H5VL_object_t *vol_obj2 = NULL; /* Object of new_loc_id */ + H5VL_object_t tmp_vol_obj; /* Temporary object */ H5VL_loc_params_t loc_params1; H5VL_loc_params_t loc_params2; herr_t ret_value = SUCCEED; /* Return value */ @@ -631,7 +632,7 @@ herr_t H5Lcreate_ud(hid_t link_loc_id, const char *link_name, H5L_type_t link_type, const void *udata, size_t udata_size, hid_t lcpl_id, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -696,7 +697,7 @@ done: herr_t H5Ldelete(hid_t loc_id, const char *name, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -753,7 +754,7 @@ herr_t H5Ldelete_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -816,7 +817,7 @@ herr_t H5Lget_val(hid_t loc_id, const char *name, void *buf/*out*/, size_t size, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -872,7 +873,7 @@ H5Lget_val_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, void *buf/*out*/, size_t size, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -928,7 +929,7 @@ done: htri_t H5Lexists(hid_t loc_id, const char *name, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; htri_t ret_value = FAIL; /* Return value */ @@ -965,13 +966,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5Lget_info - * - * Purpose: Gets metadata for a link. + * Function: H5Lget_info2 * - * Return: Success: Non-negative with information in LINFO + * Purpose: Gets metadata for a link. * - * Failure: Negative + * Return: Success: Non-negative with information in LINFO + * Failure: Negative * * Programmer: James Laird * Wednesday, June 21, 2006 @@ -979,10 +979,10 @@ done: *------------------------------------------------------------------------- */ herr_t -H5Lget_info(hid_t loc_id, const char *name, H5L_info_t *linfo /*out*/, +H5Lget_info2(hid_t loc_id, const char *name, H5L_info2_t *linfo /*out*/, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -1012,11 +1012,11 @@ H5Lget_info(hid_t loc_id, const char *name, H5L_info_t *linfo /*out*/, done: FUNC_LEAVE_API(ret_value) -} /* end H5Lget_info() */ +} /* end H5Lget_info2() */ /*------------------------------------------------------------------------- - * Function: H5Lget_info_by_idx + * Function: H5Lget_info_by_idx2 * * Purpose: Gets metadata for a link, according to the order within an * index. @@ -1030,11 +1030,11 @@ done: *------------------------------------------------------------------------- */ herr_t -H5Lget_info_by_idx(hid_t loc_id, const char *group_name, +H5Lget_info_by_idx2(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, - H5L_info_t *linfo /*out*/, hid_t lapl_id) + H5L_info2_t *linfo /*out*/, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -1072,7 +1072,7 @@ H5Lget_info_by_idx(hid_t loc_id, const char *group_name, done: FUNC_LEAVE_API(ret_value) -} /* end H5Lget_info_by_idx() */ +} /* end H5Lget_info_by_idx2() */ /*------------------------------------------------------------------------- @@ -1115,6 +1115,10 @@ H5Lregister(const H5L_class_t *cls) */ if(cls->version > H5L_LINK_CLASS_T_VERS) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid H5L_class_t version number") +#ifdef H5_NO_DEPRECATED_SYMBOLS + if(cls->version < H5L_LINK_CLASS_T_VERS) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "deprecated H5L_class_t version number (%d) and library built without deprecated symbol support", cls->version) +#endif /* H5_NO_DEPRECATED_SYMBOLS */ if(cls->id < H5L_TYPE_UD_MIN || cls->id > H5L_TYPE_MAX) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid link identification number") @@ -1229,7 +1233,7 @@ H5Lget_name_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, char *name /*out*/, size_t size, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; ssize_t ret_value = -1; /* Return value */ @@ -1272,7 +1276,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5Literate + * Function: H5Literate2 * * Purpose: Iterates over links in a group, with user callback routine, * according to the order within an index. @@ -1290,10 +1294,10 @@ done: *------------------------------------------------------------------------- */ herr_t -H5Literate(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, - hsize_t *idx_p, H5L_iterate_t op, void *op_data) +H5Literate2(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, + hsize_t *idx_p, H5L_iterate2_t op, void *op_data) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; H5I_type_t id_type; /* Type of ID */ herr_t ret_value; /* Return value */ @@ -1321,16 +1325,17 @@ H5Literate(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, loc_params.obj_type = H5I_get_type(group_id); /* Iterate over the links */ - if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, (unsigned)FALSE, (int)idx_type, (int)order, idx_p, op, op_data)) < 0) + if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, (unsigned)FALSE, (int)idx_type, (int)order, idx_p, + op, op_data)) < 0) HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link iteration failed") done: FUNC_LEAVE_API(ret_value) -} /* end H5Literate() */ +} /* end H5Literate2() */ /*------------------------------------------------------------------------- - * Function: H5Literate_by_name + * Function: H5Literate_by_name2 * * Purpose: Iterates over links in a group, with user callback routine, * according to the order within an index. @@ -1352,11 +1357,11 @@ done: *------------------------------------------------------------------------- */ herr_t -H5Literate_by_name(hid_t loc_id, const char *group_name, +H5Literate_by_name2(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx_p, - H5L_iterate_t op, void *op_data, hid_t lapl_id) + H5L_iterate2_t op, void *op_data, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value; /* Return value */ @@ -1391,7 +1396,8 @@ H5Literate_by_name(hid_t loc_id, const char *group_name, loc_params.loc_data.loc_by_name.lapl_id = lapl_id; /* Iterate over the links */ - if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, FALSE, idx_type, order, idx_p, op, op_data)) < 0) + if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, FALSE, idx_type, order, idx_p, + op, op_data)) < 0) HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link iteration failed") done: @@ -1400,7 +1406,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5Lvisit + * Function: H5Lvisit2 * * Purpose: Recursively visit all the links in a group and all * the groups that are linked to from that group. Links within @@ -1423,15 +1429,15 @@ done: * of the operators. * * Programmer: Quincey Koziol - * November 24 2007 + * November 24 2007 * *------------------------------------------------------------------------- */ herr_t -H5Lvisit(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, - H5L_iterate_t op, void *op_data) +H5Lvisit2(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, + H5L_iterate2_t op, void *op_data) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; H5I_type_t id_type; /* Type of ID */ herr_t ret_value; /* Return value */ @@ -1459,16 +1465,17 @@ H5Lvisit(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Iterate over the links */ - if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, TRUE, idx_type, order, NULL, op, op_data)) < 0) + if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, TRUE, idx_type, order, NULL, + op, op_data)) < 0) HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link visitation failed") done: FUNC_LEAVE_API(ret_value) -} /* end H5Lvisit() */ +} /* end H5Lvisit2() */ /*------------------------------------------------------------------------- - * Function: H5Lvisit_by_name + * Function: H5Lvisit_by_name2 * * Purpose: Recursively visit all the links in a group and all * the groups that are linked to from that group. Links within @@ -1496,10 +1503,10 @@ done: *------------------------------------------------------------------------- */ herr_t -H5Lvisit_by_name(hid_t loc_id, const char *group_name, H5_index_t idx_type, - H5_iter_order_t order, H5L_iterate_t op, void *op_data, hid_t lapl_id) +H5Lvisit_by_name2(hid_t loc_id, const char *group_name, H5_index_t idx_type, + H5_iter_order_t order, H5L_iterate2_t op, void *op_data, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value; /* Return value */ @@ -1534,12 +1541,13 @@ H5Lvisit_by_name(hid_t loc_id, const char *group_name, H5_index_t idx_type, loc_params.loc_data.loc_by_name.lapl_id = lapl_id; /* Visit the links */ - if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, TRUE, idx_type, order, NULL, op, op_data)) < 0) + if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, TRUE, idx_type, order, NULL, + op, op_data)) < 0) HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link visitation failed") done: FUNC_LEAVE_API(ret_value) -} /* end H5Lvisit_by_name() */ +} /* end H5Lvisit_by_name2() */ /* *------------------------------------------------------------------------- @@ -3143,7 +3151,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5L__get_info_cb(H5G_loc_t H5_ATTR_UNUSED *grp_loc/*in*/, const char H5_ATTR_UNUSED *name, +H5L__get_info_cb(H5G_loc_t *grp_loc/*in*/, const char H5_ATTR_UNUSED *name, const H5O_link_t *lnk, H5G_loc_t H5_ATTR_UNUSED *obj_loc, void *_udata/*in,out*/, H5G_own_loc_t *own_loc/*out*/) { @@ -3157,7 +3165,7 @@ H5L__get_info_cb(H5G_loc_t H5_ATTR_UNUSED *grp_loc/*in*/, const char H5_ATTR_UNU HGOTO_ERROR(H5E_LINK, H5E_NOTFOUND, FAIL, "name doesn't exist") /* Get information from the link */ - if(H5G_link_to_info(lnk, udata->linfo) < 0) + if(H5G_link_to_info(grp_loc->oloc, lnk, udata->linfo) < 0) HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "can't get link info") done: @@ -3172,7 +3180,7 @@ done: /*------------------------------------------------------------------------- * Function: H5L_get_info * - * Purpose: Returns metadata about a link. + * Purpose: Returns metadata about a link. * * Return: Non-negative on success/Negative on failure * @@ -3182,7 +3190,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5L_get_info(const H5G_loc_t *loc, const char *name, H5L_info_t *linfo/*out*/) +H5L_get_info(const H5G_loc_t *loc, const char *name, H5L_info2_t *linfo/*out*/) { H5L_trav_gi_t udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ @@ -3235,7 +3243,7 @@ H5L__get_info_by_idx_cb(H5G_loc_t H5_ATTR_UNUSED *grp_loc/*in*/, const char H5_A lnk_copied = TRUE; /* Get information from the link */ - if(H5G_link_to_info(&fnd_lnk, udata->linfo) < 0) + if(H5G_link_to_info(obj_loc->oloc, &fnd_lnk, udata->linfo) < 0) HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "can't get link info") done: @@ -3263,7 +3271,7 @@ done: */ herr_t H5L_get_info_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t n, H5L_info_t *linfo /*out*/) + H5_iter_order_t order, hsize_t n, H5L_info2_t *linfo /*out*/) { H5L_trav_gibi_t udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ @@ -3516,7 +3524,7 @@ done: */ herr_t H5L_iterate(H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t *idx_p, H5L_iterate_t op, void *op_data) + H5_iter_order_t order, hsize_t *idx_p, H5L_iterate2_t op, void *op_data) { H5G_link_iterate_t lnk_op; /* Link operator */ hsize_t last_lnk; /* Index of last object looked at */ diff --git a/src/H5Ldeprec.c b/src/H5Ldeprec.c new file mode 100644 index 0000000..8b83230 --- /dev/null +++ b/src/H5Ldeprec.c @@ -0,0 +1,628 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/*------------------------------------------------------------------------- + * + * Purpose: Deprecated functions from the H5L interface. These + * functions are here for compatibility purposes and may be + * removed in the future. Applications should switch to the + * newer APIs. + * + *------------------------------------------------------------------------- + */ + +/****************/ +/* Module Setup */ +/****************/ + +#include "H5Lmodule.h" /* This source code file is part of the H5L module */ + + +/***********/ +/* Headers */ +/***********/ +#include "H5private.h" /* Generic Functions */ +#include "H5CXprivate.h" /* API Contexts */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Lpkg.h" /* Links */ + +#include "H5VLnative_private.h" + +#ifndef H5_NO_DEPRECATED_SYMBOLS + +/****************/ +/* Local Macros */ +/****************/ + + +/******************/ +/* Local Typedefs */ +/******************/ + +/* Shim data for using native H5Literate/visit callbacks with the VOL */ +typedef struct H5L_shim_data_t { + H5L_iterate1_t real_op; + void *real_op_data; +} H5L_shim_data_t; + + +/********************/ +/* Package Typedefs */ +/********************/ + + +/********************/ +/* Local Prototypes */ +/********************/ + + +/*********************/ +/* Package Variables */ +/*********************/ + + +/*****************************/ +/* Library Private Variables */ +/*****************************/ + + +/*******************/ +/* Local Variables */ +/*******************/ + + + +/*------------------------------------------------------------------------- + * Function: H5L__iterate2_shim + * + * Purpose: Shim function for translating between H5L_info2_t and + * H5L_info1_t structures, as used by H5Literate2/H5Lvisit2 + * and H5Literate1/H5Lvisit1, respectively. + * + * Return: Success: H5_ITER_CONT or H5_ITER_STOP + * Failure: H5_ITER_ERROR + * + *------------------------------------------------------------------------- + */ +static herr_t +H5L__iterate2_shim(hid_t group_id, const char *name, const H5L_info2_t *linfo2, void *op_data) +{ + H5L_shim_data_t *shim_data = (H5L_shim_data_t *)op_data; + H5L_info1_t linfo; + herr_t ret_value = H5_ITER_CONT; + + FUNC_ENTER_STATIC + + /* Copy the new-style members into the old-style struct */ + if (linfo2) { + linfo.type = linfo2->type; + linfo.corder_valid = linfo2->corder_valid; + linfo.corder = linfo2->corder; + linfo.cset = linfo2->cset; + if (H5L_TYPE_HARD == linfo2->type) { + if(H5VLnative_token_to_addr(group_id, linfo2->u.token, &linfo.u.address) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTUNSERIALIZE, H5_ITER_ERROR, "can't deserialize object token into address") + } + else + linfo.u.val_size = linfo2->u.val_size; + } + + /* Invoke the real callback */ + ret_value = shim_data->real_op(group_id, name, &linfo, shim_data->real_op_data); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5L__iterate2_shim() */ + + +/*------------------------------------------------------------------------- + * Function: H5Literate1 + * + * Purpose: Iterates over links in a group, with user callback routine, + * according to the order within an index. + * + * Same pattern of behavior as H5Giterate. + * + * Note: Deprecated in favor of H5Literate2 + * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. + * + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. + * + *------------------------------------------------------------------------- + */ +herr_t +H5Literate1(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, + hsize_t *idx_p, H5L_iterate1_t op, void *op_data) +{ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + H5I_type_t id_type; /* Type of ID */ + H5L_shim_data_t shim_data; + hbool_t is_native_vol_obj; + herr_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE6("e", "iIiIo*hx*x", group_id, idx_type, order, idx_p, op, op_data); + + /* Check arguments */ + id_type = H5I_get_type(group_id); + if (!(H5I_GROUP == id_type || H5I_FILE == id_type)) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid argument") + if (idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if (order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if (!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no operator specified") + + /* Get the location object */ + if (NULL == (vol_obj = (H5VL_object_t *)H5I_object(group_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_LINK, H5E_BADVALUE, FAIL, "H5Literate1 is only meant to be used with the native VOL connector") + + /* Set location struct fields */ + loc_params.type = H5VL_OBJECT_BY_SELF; + loc_params.obj_type = H5I_get_type(group_id); + + /* Set up shim */ + shim_data.real_op = op; + shim_data.real_op_data = op_data; + + /* Iterate over the links */ + if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, (unsigned)FALSE, (int)idx_type, (int)order, idx_p, + H5L__iterate2_shim, (void *)&shim_data)) < 0) + HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link iteration failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Literate1() */ + + +/*------------------------------------------------------------------------- + * Function: H5Literate_by_name1 + * + * Purpose: Iterates over links in a group, with user callback routine, + * according to the order within an index. + * + * Same pattern of behavior as H5Giterate. + * + * Note: Deprecated in favor of H5Literate_by_name2 + * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. + * + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. + * + * + * Programmer: Quincey Koziol + * Thursday, November 16, 2006 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Literate_by_name1(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx_p, + H5L_iterate1_t op, void *op_data, hid_t lapl_id) +{ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + H5L_shim_data_t shim_data; + hbool_t is_native_vol_obj; + herr_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE8("e", "i*sIiIo*hx*xi", loc_id, group_name, idx_type, order, idx_p, op, + op_data, lapl_id); + + /* Check arguments */ + if(!group_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "group_name parameter cannot be NULL") + if(!*group_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "group_name parameter cannot be an empty string") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no operator specified") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTSET, FAIL, "can't set access property list info") + + /* Get the location object */ + if(NULL == (vol_obj = (H5VL_object_t *)H5I_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_LINK, H5E_BADVALUE, FAIL, "H5Literate_by_name1 is only meant to be used with the native VOL connector") + + /* Set location struct fields */ + loc_params.type = H5VL_OBJECT_BY_NAME; + loc_params.obj_type = H5I_get_type(loc_id); + loc_params.loc_data.loc_by_name.name = group_name; + loc_params.loc_data.loc_by_name.lapl_id = lapl_id; + + /* Set up shim */ + shim_data.real_op = op; + shim_data.real_op_data = op_data; + + /* Iterate over the links */ + if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, FALSE, idx_type, order, idx_p, + H5L__iterate2_shim, (void *)&shim_data)) < 0) + HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link iteration failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Literate_by_name1() */ + + +/*------------------------------------------------------------------------- + * Function: H5Lget_info1 + * + * Purpose: Gets metadata for a link. + * + * Note: Deprecated in favor of H5Lget_info2 + * + * Return: Success: Non-negative with information in LINFO + * Failure: Negative + * + * Programmer: James Laird + * Wednesday, June 21, 2006 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Lget_info1(hid_t loc_id, const char *name, H5L_info1_t *linfo /*out*/, + hid_t lapl_id) +{ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ + H5VL_loc_params_t loc_params; + H5L_info2_t linfo2; /* New-style link info */ + hbool_t is_native_vol_obj; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE4("e", "i*sxi", loc_id, name, linfo, lapl_id); + + /* Check arguments */ + if(!name || !*name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, TRUE) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTSET, FAIL, "can't set access property list info") + + loc_params.type = H5VL_OBJECT_BY_NAME; + loc_params.obj_type = H5I_get_type(loc_id); + loc_params.loc_data.loc_by_name.name = name; + loc_params.loc_data.loc_by_name.lapl_id = lapl_id; + + /* get the location object */ + if(NULL == (vol_obj = (H5VL_object_t *)H5I_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_LINK, H5E_BADVALUE, FAIL, "H5Lget_info1 is only meant to be used with the native VOL connector") + + /* Get the link information */ + if(H5VL_link_get(vol_obj, &loc_params, H5VL_LINK_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &linfo2) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link info") + + /* Copy the new-style members into the old-style struct */ + if(linfo) { + linfo->type = linfo2.type; + linfo->corder_valid = linfo2.corder_valid; + linfo->corder = linfo2.corder; + linfo->cset = linfo2.cset; + if(H5L_TYPE_HARD == linfo2.type) { + void *vol_obj_data; + + if(NULL == (vol_obj_data = H5VL_object_data(vol_obj))) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get underlying VOL object") + + if(H5VL_native_token_to_addr(vol_obj_data, loc_params.obj_type, linfo2.u.token, &linfo->u.address) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") + } /* end if */ + else + linfo->u.val_size = linfo2.u.val_size; + } /* end if */ + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Lget_info1() */ + + +/*------------------------------------------------------------------------- + * Function: H5Lget_info_by_idx1 + * + * Purpose: Gets metadata for a link, according to the order within an + * index. + * + * Note: Deprecated in favor of H5Lget_info_by_idx2 + * + * Return: Success: Non-negative with information in LINFO + * Failure: Negative + * + * Programmer: Quincey Koziol + * Monday, November 6, 2006 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Lget_info_by_idx1(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, hsize_t n, + H5L_info1_t *linfo /*out*/, hid_t lapl_id) +{ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ + H5VL_loc_params_t loc_params; + H5L_info2_t linfo2; /* New-style link info */ + hbool_t is_native_vol_obj; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE7("e", "i*sIiIohxi", loc_id, group_name, idx_type, order, n, linfo, + lapl_id); + + /* Check arguments */ + if(!group_name || !*group_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTSET, FAIL, "can't set access property list info") + + loc_params.type = H5VL_OBJECT_BY_IDX; + loc_params.loc_data.loc_by_idx.name = group_name; + loc_params.loc_data.loc_by_idx.idx_type = idx_type; + loc_params.loc_data.loc_by_idx.order = order; + loc_params.loc_data.loc_by_idx.n = n; + loc_params.loc_data.loc_by_idx.lapl_id = lapl_id; + loc_params.obj_type = H5I_get_type(loc_id); + + /* get the location object */ + if(NULL == (vol_obj = (H5VL_object_t *)H5I_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_LINK, H5E_BADVALUE, FAIL, "H5Lget_info_by_idx1 is only meant to be used with the native VOL connector") + + /* Get the link information */ + if(H5VL_link_get(vol_obj, &loc_params, H5VL_LINK_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &linfo2) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "unable to get link info") + + /* Copy the new-style members into the old-style struct */ + if(linfo) { + linfo->type = linfo2.type; + linfo->corder_valid = linfo2.corder_valid; + linfo->corder = linfo2.corder; + linfo->cset = linfo2.cset; + if(H5L_TYPE_HARD == linfo2.type) { + void *vol_obj_data; + + if(NULL == (vol_obj_data = H5VL_object_data(vol_obj))) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get underlying VOL object") + + if(H5VL_native_token_to_addr(vol_obj_data, loc_params.obj_type, linfo2.u.token, &linfo->u.address) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") + } /* end if */ + else + linfo->u.val_size = linfo2.u.val_size; + } /* end if */ + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Lget_info_by_idx1() */ + + +/*------------------------------------------------------------------------- + * Function: H5Lvisit1 + * + * Purpose: Recursively visit all the links in a group and all + * the groups that are linked to from that group. Links within + * each group are visited according to the order within the + * specified index (unless the specified index does not exist for + * a particular group, then the "name" index is used). + * + * NOTE: Each _link_ reachable from the initial group will only be + * visited once. However, because an object may be reached from + * more than one link, the visitation may call the application's + * callback with more than one link that points to a particular + * _object_. + * + * Note: Deprecated in favor of H5Lvisit2 + * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. + * + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. + * + * Programmer: Quincey Koziol + * November 24 2007 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Lvisit1(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, + H5L_iterate1_t op, void *op_data) +{ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + H5I_type_t id_type; /* Type of ID */ + H5L_shim_data_t shim_data; + hbool_t is_native_vol_obj; + herr_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE5("e", "iIiIox*x", group_id, idx_type, order, op, op_data); + + /* Check args */ + id_type = H5I_get_type(group_id); + if(!(H5I_GROUP == id_type || H5I_FILE == id_type)) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid argument") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") + + /* Set location struct fields */ + loc_params.type = H5VL_OBJECT_BY_SELF; + loc_params.obj_type = H5I_get_type(group_id); + + /* Get the location object */ + if(NULL == (vol_obj = (H5VL_object_t *)H5I_object(group_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_LINK, H5E_BADVALUE, FAIL, "H5Lvisit1 is only meant to be used with the native VOL connector") + + /* Set up shim */ + shim_data.real_op = op; + shim_data.real_op_data = op_data; + + /* Iterate over the links */ + if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, + H5_REQUEST_NULL, TRUE, idx_type, order, NULL, H5L__iterate2_shim, (void *)&shim_data)) < 0) + HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link visitation failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Lvisit1() */ + + +/*------------------------------------------------------------------------- + * Function: H5Lvisit_by_name1 + * + * Purpose: Recursively visit all the links in a group and all + * the groups that are linked to from that group. Links within + * each group are visited according to the order within the + * specified index (unless the specified index does not exist for + * a particular group, then the "name" index is used). + * + * NOTE: Each _link_ reachable from the initial group will only be + * visited once. However, because an object may be reached from + * more than one link, the visitation may call the application's + * callback with more than one link that points to a particular + * _object_. + * + * Note: Deprecated in favor of H5Lvisit_by_name2 + * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. + * + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. + * + * Programmer: Quincey Koziol + * November 3 2007 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Lvisit_by_name1(hid_t loc_id, const char *group_name, H5_index_t idx_type, + H5_iter_order_t order, H5L_iterate1_t op, void *op_data, hid_t lapl_id) +{ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + H5L_shim_data_t shim_data; + hbool_t is_native_vol_obj; + herr_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE7("e", "i*sIiIox*xi", loc_id, group_name, idx_type, order, op, op_data, + lapl_id); + + /* Check args */ + if(!group_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "group_name parameter cannot be NULL") + if(!*group_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "group_name parameter cannot be an empty string") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTSET, FAIL, "can't set access property list info") + + /* get the location object */ + if(NULL == (vol_obj = (H5VL_object_t *)H5I_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_LINK, H5E_CANTGET, FAIL, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_LINK, H5E_BADVALUE, FAIL, "H5Lvisit_by_name1 is only meant to be used with the native VOL connector") + + /* Set location struct fields */ + loc_params.type = H5VL_OBJECT_BY_NAME; + loc_params.obj_type = H5I_get_type(loc_id); + loc_params.loc_data.loc_by_name.name = group_name; + loc_params.loc_data.loc_by_name.lapl_id = lapl_id; + + /* Set up shim */ + shim_data.real_op = op; + shim_data.real_op_data = op_data; + + /* Visit the links */ + if((ret_value = H5VL_link_specific(vol_obj, &loc_params, H5VL_LINK_ITER, H5P_DATASET_XFER_DEFAULT, + H5_REQUEST_NULL, TRUE, idx_type, order, NULL, H5L__iterate2_shim, (void *)&shim_data)) < 0) + HGOTO_ERROR(H5E_LINK, H5E_BADITER, FAIL, "link visitation failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Lvisit_by_name1() */ + +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + diff --git a/src/H5Lexternal.c b/src/H5Lexternal.c index dc104d7..1b007b6 100644 --- a/src/H5Lexternal.c +++ b/src/H5Lexternal.c @@ -341,7 +341,7 @@ herr_t H5Lcreate_external(const char *file_name, const char *obj_name, hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; char *norm_obj_name = NULL; /* Pointer to normalized current name */ void *ext_link_buf = NULL; /* Buffer to contain external link */ diff --git a/src/H5Lprivate.h b/src/H5Lprivate.h index 6652352..ab68b84 100644 --- a/src/H5Lprivate.h +++ b/src/H5Lprivate.h @@ -68,7 +68,7 @@ typedef struct { hsize_t n; /* Offset of link within index */ /* Out */ - H5L_info_t *linfo; /* Buffer to return to user */ + H5L_info2_t *linfo; /* Buffer to return to user */ } H5L_trav_gibi_t; /* User data for path traversal routine for getting name by index */ @@ -98,7 +98,6 @@ typedef struct H5L_elink_cb_t { void *user_data; } H5L_elink_cb_t; - /*****************************/ /* Library Private Variables */ /*****************************/ @@ -124,13 +123,13 @@ H5_DLL herr_t H5L_move(const H5G_loc_t *src_loc, const char *src_name, H5_DLL htri_t H5L_exists_tolerant(const H5G_loc_t *loc, const char *name); H5_DLL htri_t H5L_exists(const H5G_loc_t *loc, const char *name); H5_DLL herr_t H5L_get_info(const H5G_loc_t *loc, const char *name, - H5L_info_t *linkbuf/*out*/); + H5L_info2_t *linkbuf/*out*/); H5_DLL herr_t H5L_delete(const H5G_loc_t *loc, const char *name); H5_DLL herr_t H5L_delete_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n); H5_DLL herr_t H5L_get_info_by_idx(const H5G_loc_t *loc, const char *name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, - H5L_info_t *linfo /*out*/); + H5L_info2_t *linfo /*out*/); H5_DLL ssize_t H5L_get_name_by_idx(const H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, char *name /*out*/, size_t size); @@ -142,7 +141,7 @@ H5_DLL herr_t H5L_get_val_by_idx(const H5G_loc_t *loc, const char *name, H5_DLL herr_t H5L_register_external(void); H5_DLL herr_t H5L_iterate(H5G_loc_t *loc, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx_p, - H5L_iterate_t op, void *op_data); + H5L_iterate2_t op, void *op_data); /* User-defined link functions */ H5_DLL herr_t H5L_register(const H5L_class_t *cls); diff --git a/src/H5Lpublic.h b/src/H5Lpublic.h index 7bdb001..3bac5ac 100644 --- a/src/H5Lpublic.h +++ b/src/H5Lpublic.h @@ -27,6 +27,7 @@ /* Public headers needed by this file */ #include "H5public.h" /* Generic Functions */ #include "H5Ipublic.h" /* IDs */ +#include "H5Opublic.h" /* Object Headers */ #include "H5Tpublic.h" /* Datatypes */ /*****************/ @@ -43,9 +44,6 @@ /* Current version of the H5L_class_t struct */ #define H5L_LINK_CLASS_T_VERS 1 -/* Previous versions of the H5L_class_t struct */ -#define H5L_LINK_CLASS_T_VERS_0 0 - #ifdef __cplusplus extern "C" { #endif @@ -72,17 +70,19 @@ typedef enum { #define H5L_TYPE_BUILTIN_MAX H5L_TYPE_SOFT /* Maximum value link value for "built-in" link types */ #define H5L_TYPE_UD_MIN H5L_TYPE_EXTERNAL /* Link ids at or above this value are "user-defined" link types. */ -/* Information struct for link (for H5Lget_info/H5Lget_info_by_idx) */ +/* Information struct for link (for H5Lget_info2/H5Lget_info_by_idx2) + * H5O_token_t version used in VOL layer and future public API calls + */ typedef struct { H5L_type_t type; /* Type of link */ hbool_t corder_valid; /* Indicate if creation order is valid */ int64_t corder; /* Creation order */ H5T_cset_t cset; /* Character set of link name */ union { - haddr_t address; /* Address hard link points to */ + H5O_token_t token; /* Token of location that hard link points to */ size_t val_size; /* Size of a soft link or UD link value */ } u; -} H5L_info_t; +} H5L_info2_t; /* The H5L_class_t struct can be used to override the behavior of a * "user-defined" link class. Users should populate the struct with callback @@ -102,8 +102,6 @@ typedef herr_t (*H5L_copy_func_t)(const char *new_name, hid_t new_loc, const void *lnkdata, size_t lnkdata_size); /* Callback during link traversal */ -typedef hid_t (*H5L_traverse_0_func_t)(const char *link_name, hid_t cur_group, - const void *lnkdata, size_t lnkdata_size, hid_t lapl_id); typedef hid_t (*H5L_traverse_func_t)(const char *link_name, hid_t cur_group, const void *lnkdata, size_t lnkdata_size, hid_t lapl_id, hid_t dxpl_id); @@ -116,19 +114,6 @@ typedef herr_t (*H5L_delete_func_t)(const char *link_name, hid_t file, typedef ssize_t (*H5L_query_func_t)(const char *link_name, const void *lnkdata, size_t lnkdata_size, void *buf /*out*/, size_t buf_size); -/* User-defined link types */ -typedef struct { - int version; /* Version number of this struct */ - H5L_type_t id; /* Link type ID */ - const char *comment; /* Comment for debugging */ - H5L_create_func_t create_func; /* Callback during link creation */ - H5L_move_func_t move_func; /* Callback after moving link */ - H5L_copy_func_t copy_func; /* Callback after copying link */ - H5L_traverse_0_func_t trav_func; /* Callback during link traversal */ - H5L_delete_func_t del_func; /* Callback for link deletion */ - H5L_query_func_t query_func; /* Callback for queries */ -} H5L_class_0_t; - typedef struct { int version; /* Version number of this struct */ H5L_type_t id; /* Link type ID */ @@ -141,8 +126,10 @@ typedef struct { H5L_query_func_t query_func; /* Callback for queries */ } H5L_class_t; -/* Prototype for H5Literate/H5Literate_by_name() operator */ -typedef herr_t (*H5L_iterate_t)(hid_t group, const char *name, const H5L_info_t *info, +/* Prototype for H5Literate2/H5Literate_by_name2() operator + * H5O_token_t version used in VOL layer and future public API calls + */ +typedef herr_t (*H5L_iterate2_t)(hid_t group, const char *name, const H5L_info2_t *info, void *op_data); /* Callback for external link traversal */ @@ -177,23 +164,23 @@ H5_DLL herr_t H5Lget_val_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, void *buf/*out*/, size_t size, hid_t lapl_id); H5_DLL htri_t H5Lexists(hid_t loc_id, const char *name, hid_t lapl_id); -H5_DLL herr_t H5Lget_info(hid_t loc_id, const char *name, - H5L_info_t *linfo /*out*/, hid_t lapl_id); -H5_DLL herr_t H5Lget_info_by_idx(hid_t loc_id, const char *group_name, +H5_DLL herr_t H5Lget_info2(hid_t loc_id, const char *name, + H5L_info2_t *linfo /*out*/, hid_t lapl_id); +H5_DLL herr_t H5Lget_info_by_idx2(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, - H5L_info_t *linfo /*out*/, hid_t lapl_id); + H5L_info2_t *linfo /*out*/, hid_t lapl_id); H5_DLL ssize_t H5Lget_name_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, char *name /*out*/, size_t size, hid_t lapl_id); -H5_DLL herr_t H5Literate(hid_t grp_id, H5_index_t idx_type, - H5_iter_order_t order, hsize_t *idx, H5L_iterate_t op, void *op_data); -H5_DLL herr_t H5Literate_by_name(hid_t loc_id, const char *group_name, +H5_DLL herr_t H5Literate2(hid_t grp_id, H5_index_t idx_type, + H5_iter_order_t order, hsize_t *idx, H5L_iterate2_t op, void *op_data); +H5_DLL herr_t H5Literate_by_name2(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, - H5L_iterate_t op, void *op_data, hid_t lapl_id); -H5_DLL herr_t H5Lvisit(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, - H5L_iterate_t op, void *op_data); -H5_DLL herr_t H5Lvisit_by_name(hid_t loc_id, const char *group_name, - H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op, + H5L_iterate2_t op, void *op_data, hid_t lapl_id); +H5_DLL herr_t H5Lvisit2(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, + H5L_iterate2_t op, void *op_data); +H5_DLL herr_t H5Lvisit_by_name2(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, H5L_iterate2_t op, void *op_data, hid_t lapl_id); /* UD link functions */ @@ -210,6 +197,73 @@ H5_DLL herr_t H5Lunpack_elink_val(const void *ext_linkval/*in*/, size_t link_siz H5_DLL herr_t H5Lcreate_external(const char *file_name, const char *obj_name, hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id); +/* Symbols defined for compatibility with previous versions of the HDF5 API. + * + * Use of these symbols is deprecated. + */ +#ifndef H5_NO_DEPRECATED_SYMBOLS + +/* Macros */ + +/* Previous versions of the H5L_class_t struct */ +#define H5L_LINK_CLASS_T_VERS_0 0 + + +/* Typedefs */ + +/* Information struct for link (for H5Lget_info1/H5Lget_info_by_idx1) */ +typedef struct { + H5L_type_t type; /* Type of link */ + hbool_t corder_valid; /* Indicate if creation order is valid */ + int64_t corder; /* Creation order */ + H5T_cset_t cset; /* Character set of link name */ + union { + haddr_t address; /* Address hard link points to */ + size_t val_size; /* Size of a soft link or UD link value */ + } u; +} H5L_info1_t; + +/* Callback during link traversal */ +typedef hid_t (*H5L_traverse_0_func_t)(const char *link_name, hid_t cur_group, + const void *lnkdata, size_t lnkdata_size, hid_t lapl_id); + +/* User-defined link types */ +typedef struct { + int version; /* Version number of this struct */ + H5L_type_t id; /* Link type ID */ + const char *comment; /* Comment for debugging */ + H5L_create_func_t create_func; /* Callback during link creation */ + H5L_move_func_t move_func; /* Callback after moving link */ + H5L_copy_func_t copy_func; /* Callback after copying link */ + H5L_traverse_0_func_t trav_func; /* Callback during link traversal */ + H5L_delete_func_t del_func; /* Callback for link deletion */ + H5L_query_func_t query_func; /* Callback for queries */ +} H5L_class_0_t; + +/* Prototype for H5Literate1/H5Literate_by_name1() operator */ +typedef herr_t (*H5L_iterate1_t)(hid_t group, const char *name, const H5L_info1_t *info, + void *op_data); + + +/* Function prototypes */ +H5_DLL herr_t H5Lget_info1(hid_t loc_id, const char *name, + H5L_info1_t *linfo /*out*/, hid_t lapl_id); +H5_DLL herr_t H5Lget_info_by_idx1(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, hsize_t n, + H5L_info1_t *linfo /*out*/, hid_t lapl_id); +H5_DLL herr_t H5Literate1(hid_t grp_id, H5_index_t idx_type, + H5_iter_order_t order, hsize_t *idx, H5L_iterate1_t op, void *op_data); +H5_DLL herr_t H5Literate_by_name1(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, + H5L_iterate1_t op, void *op_data, hid_t lapl_id); +H5_DLL herr_t H5Lvisit1(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, + H5L_iterate1_t op, void *op_data); +H5_DLL herr_t H5Lvisit_by_name1(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, H5L_iterate1_t op, + void *op_data, hid_t lapl_id); + +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + #ifdef __cplusplus } #endif @@ -256,7 +256,7 @@ H5Mcreate(hid_t loc_id, const char *name, hid_t key_type_id, hid_t val_type_id, hid_t lcpl_id, hid_t mcpl_id, hid_t mapl_id) { void *map = NULL; /* New map's info */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -343,8 +343,8 @@ hid_t H5Mcreate_anon(hid_t loc_id, hid_t key_type_id, hid_t val_type_id, hid_t mcpl_id, hid_t mapl_id) { - void *map = NULL; /* map token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *map = NULL; /* map object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -407,8 +407,8 @@ done: hid_t H5Mopen(hid_t loc_id, const char *name, hid_t mapl_id) { - void *map = NULL; /* map token from VOL connector */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *map = NULL; /* map object from VOL connector */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -2290,7 +2290,7 @@ H5MF_get_freespace(H5F_t *f, hsize_t *tot_space, hsize_t *meta_size) /* Retrieve free space size from free space manager */ if(H5FS_sect_stats(f->shared->fs_man[type], &type_fs_size, NULL) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query free space stats") - if(H5FS_size(f, f->shared->fs_man[type], &type_meta_size) < 0) + if(H5FS_size(f->shared->fs_man[type], &type_meta_size) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query free space metadata stats") /* Increment total free space for types */ @@ -102,7 +102,7 @@ hid_t H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5I_type_t opened_type; void *opened_obj = NULL; H5VL_loc_params_t loc_params; @@ -171,7 +171,7 @@ hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5I_type_t opened_type; void *opened_obj = NULL; H5VL_loc_params_t loc_params; @@ -217,57 +217,34 @@ done: /*------------------------------------------------------------------------- - * Function: H5Oopen_by_addr + * Function: H5Oopen_by_token * - * Purpose: Warning! This function is EXTREMELY DANGEROUS! - * Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA, - * and other VERY BAD THINGS! - * - * This function opens an object using its address within the - * HDF5 file, similar to an HDF5 hard link. The open object - * is identical to an object opened with H5Oopen() and should - * be closed with H5Oclose() or a type-specific closing - * function (such as H5Gclose() ). - * - * This function is very dangerous if called on an invalid - * address. For this reason, H5Oincr_refcount() should be - * used to prevent HDF5 from deleting any object that is - * referenced by address (e.g. by a user-defined link). - * H5Odecr_refcount() should be used when the object is - * no longer being referenced by address (e.g. when the UD link - * is deleted). - * - * The address of the HDF5 file on disk has no effect on - * H5Oopen_by_addr(), nor does the use of any unusual file - * drivers. The "address" is really the offset within the - * HDF5 file, and HDF5's file drivers will transparently - * map this to an address on disk for the filesystem. + * Purpose: Same as H5Oopen_by_addr, but uses VOL-independent tokens. * - * Return: Success: An open object identifier - * Failure: H5I_INVALID_HID + * Return: Success: An open object identifier + * Failure: H5I_INVALID_HID * - * Programmer: James Laird - * July 14 2006 + * Programmer: Dana Robinson + * Winter 2019 * *------------------------------------------------------------------------- */ hid_t -H5Oopen_by_addr(hid_t loc_id, haddr_t addr) +H5Oopen_by_token(hid_t loc_id, H5O_token_t token) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5I_type_t vol_obj_type = H5I_BADID;/* Object type of loc_id */ H5I_type_t opened_type; /* Opened object type */ void *opened_obj = NULL; /* Opened object */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ - hid_t file_id = H5I_INVALID_HID; /* File ID */ - void *vol_obj_file = NULL; /* Object token of file_id */ - H5F_t *f = NULL; - uint8_t *p = NULL; hid_t ret_value = H5I_INVALID_HID; /* Return value */ FUNC_ENTER_API(H5I_INVALID_HID) - H5TRACE2("i", "ia", loc_id, addr); + H5TRACE2("i", "ik", loc_id, token); + + /* Check args */ + if(H5O_IS_TOKEN_UNDEF(token)) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "can't open H5O_TOKEN_UNDEF") /* Get the location object */ if(NULL == (vol_obj = (H5VL_object_t *)H5I_object(loc_id))) @@ -277,39 +254,21 @@ H5Oopen_by_addr(hid_t loc_id, haddr_t addr) if((vol_obj_type = H5I_get_type(loc_id)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier") - /* Get the file for the object */ - if((file_id = H5F_get_file_id(vol_obj, vol_obj_type, FALSE)) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a file or file object") - - /* Retrieve VOL object */ - if(NULL == (vol_obj_file = H5VL_vol_object(file_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier") - - /* Retrieve file from VOL object */ - if(NULL == (f = (H5F_t *)H5VL_object_data((const H5VL_object_t *)vol_obj_file))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid VOL object") - - /* This is a native specific routine that requires serialization of the token */ - p = (uint8_t *)&obj_token; - H5F_addr_encode(f, &p, addr); - loc_params.type = H5VL_OBJECT_BY_TOKEN; - loc_params.loc_data.loc_by_token.token = &obj_token; + loc_params.loc_data.loc_by_token.token = &token; loc_params.obj_type = vol_obj_type; /* Open the object */ if(NULL == (opened_obj = H5VL_object_open(vol_obj, &loc_params, &opened_type, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL))) HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, H5I_INVALID_HID, "unable to open object") - /* Register the dataset ID */ + /* Register the object's ID */ if((ret_value = H5VL_register(opened_type, opened_obj, vol_obj->connector, TRUE)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to atomize object handle") done: - if(file_id != H5I_INVALID_HID && H5I_dec_ref(file_id) < 0) - HDONE_ERROR(H5E_REFERENCE, H5E_CANTDEC, H5I_INVALID_HID, "unable to decrement refcount on file") FUNC_LEAVE_API(ret_value) -} /* end H5Oopen_by_addr() */ +} /* end H5Oopen_by_token() */ /*------------------------------------------------------------------------- @@ -337,9 +296,9 @@ herr_t H5Olink(hid_t obj_id, hid_t new_loc_id, const char *new_name, hid_t lcpl_id, hid_t lapl_id) { - H5VL_object_t *vol_obj1 = NULL; /* object token of obj_id */ - H5VL_object_t *vol_obj2 = NULL; /* object token of new_loc_id */ - H5VL_object_t tmp_vol_obj; /* Temporary object token of */ + H5VL_object_t *vol_obj1 = NULL; /* object of obj_id */ + H5VL_object_t *vol_obj2 = NULL; /* object of new_loc_id */ + H5VL_object_t tmp_vol_obj; /* Temporary object */ H5VL_loc_params_t loc_params1; H5VL_loc_params_t loc_params2; herr_t ret_value = SUCCEED; /* Return value */ @@ -429,7 +388,7 @@ done: herr_t H5Oincr_refcount(hid_t object_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; @@ -479,7 +438,7 @@ done: herr_t H5Odecr_refcount(hid_t object_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -522,7 +481,7 @@ done: htri_t H5Oexists_by_name(hid_t loc_id, const char *name, hid_t lapl_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; htri_t ret_value = FAIL; /* Return value */ @@ -559,23 +518,21 @@ done: /*------------------------------------------------------------------------- - * Function: H5Oget_info2 + * Function: H5Oget_info3 * * Purpose: Retrieve information about an object. * - * NOTE: Add a parameter "fields" to indicate selection of object info. - * * Return: SUCCEED/FAIL * - * Programmer: Neil Fortner - * July 7 2010 + * Programmer: Dana Robinson + * Fall 2019 * *------------------------------------------------------------------------- */ herr_t -H5Oget_info2(hid_t loc_id, H5O_info_t *oinfo, unsigned fields) +H5Oget_info3(hid_t loc_id, H5O_info2_t *oinfo, unsigned fields) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -597,33 +554,31 @@ H5Oget_info2(hid_t loc_id, H5O_info_t *oinfo, unsigned fields) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Retrieve the object's information */ - if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, oinfo, fields) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") + if(H5VL_object_get(vol_obj, &loc_params, H5VL_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get data model info for object") done: FUNC_LEAVE_API(ret_value) -} /* end H5Oget_info2() */ +} /* end H5Oget_info3() */ /*------------------------------------------------------------------------- - * Function: H5Oget_info_by_name2 + * Function: H5Oget_info_by_name3 * * Purpose: Retrieve information about an object * - * NOTE: Add a parameter "fields" to indicate selection of object info. - * * Return: SUCCEED/FAIL * - * Programmer: Neil Fortner - * July 7 2010 + * Programmer: Dana Robinson + * Fall 2019 * *------------------------------------------------------------------------- */ herr_t -H5Oget_info_by_name2(hid_t loc_id, const char *name, H5O_info_t *oinfo, - unsigned fields, hid_t lapl_id) +H5Oget_info_by_name3(hid_t loc_id, const char *name, + H5O_info2_t *oinfo, unsigned fields, hid_t lapl_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -655,35 +610,33 @@ H5Oget_info_by_name2(hid_t loc_id, const char *name, H5O_info_t *oinfo, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Retrieve the object's information */ - if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, oinfo, fields) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object: '%s'", name) + if(H5VL_object_get(vol_obj, &loc_params, H5VL_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get data model info for object") done: FUNC_LEAVE_API(ret_value) -} /* end H5Oget_info_by_name2() */ +} /* end H5Oget_info_by_name3() */ /*------------------------------------------------------------------------- - * Function: H5Oget_info_by_idx2 - * - * Purpose: Retrieve information about an object, according to the order - * of an index. + * Function: H5Oget_info_by_idx3 * - * NOTE: Add a parameter "fields" to indicate selection of object info. + * Purpose: Retrieve information about an object, according to + * the order of an index. * * Return: Success: Non-negative * Failure: Negative * - * Programmer: Quincey Koziol - * November 26 2006 + * Programmer: Dana Robinson + * Fall 2019 * *------------------------------------------------------------------------- */ herr_t -H5Oget_info_by_idx2(hid_t loc_id, const char *group_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, unsigned fields, hid_t lapl_id) +H5Oget_info_by_idx3(hid_t loc_id, const char *group_name, H5_index_t idx_type, + H5_iter_order_t order, hsize_t n, H5O_info2_t *oinfo, unsigned fields, hid_t lapl_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -720,12 +673,176 @@ H5Oget_info_by_idx2(hid_t loc_id, const char *group_name, H5_index_t idx_type, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Retrieve the object's information */ - if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, oinfo, fields) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") + if(H5VL_object_get(vol_obj, &loc_params, H5VL_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get data model info for object") done: FUNC_LEAVE_API(ret_value) -} /* end H5Oget_info_by_idx2() */ +} /* end H5Oget_info_by_idx3() */ + + +/*------------------------------------------------------------------------- + * Function: H5Oget_native_info + * + * Purpose: Retrieve native file format information about an object. + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2019 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_native_info(hid_t loc_id, H5O_native_info_t *oinfo, unsigned fields) +{ + H5VL_object_t *vol_obj; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE3("e", "i*xIu", loc_id, oinfo, fields); + + /* Check args */ + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "oinfo parameter cannot be NULL") + if(fields & ~H5O_NATIVE_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") + + /* Set location struct fields */ + loc_params.type = H5VL_OBJECT_BY_SELF; + loc_params.obj_type = H5I_get_type(loc_id); + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Retrieve the object's information */ + if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_NATIVE_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get native file format info for object") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_native_info() */ + + +/*------------------------------------------------------------------------- + * Function: H5Oget_native_info_by_name + * + * Purpose: Retrieve native file format information about an object + * + * Return: SUCCEED/FAIL + * + * Programmer: Dana Robinson + * Fall 2019 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_native_info_by_name(hid_t loc_id, const char *name, H5O_native_info_t *oinfo, + unsigned fields, hid_t lapl_id) +{ + H5VL_object_t *vol_obj; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE5("e", "i*s*xIui", loc_id, name, oinfo, fields, lapl_id); + + /* Check args */ + if(!name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "name parameter cannot be NULL") + if(!*name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "name parameter cannot be an empty string") + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "oinfo parameter cannot be NULL") + if(fields & ~H5O_NATIVE_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + /* Fill out location struct */ + loc_params.type = H5VL_OBJECT_BY_NAME; + loc_params.loc_data.loc_by_name.name = name; + loc_params.loc_data.loc_by_name.lapl_id = lapl_id; + loc_params.obj_type = H5I_get_type(loc_id); + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Retrieve the object's information */ + if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_NATIVE_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get native file format info for object: '%s'", name) + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_native_info_by_name() */ + + +/*------------------------------------------------------------------------- + * Function: H5Oget_native_info_by_idx + * + * Purpose: Retrieve native file format information about an object, + * according to the order of an index. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Dana Robinson + * Fall 2019 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_native_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, + H5_iter_order_t order, hsize_t n, H5O_native_info_t *oinfo, unsigned fields, hid_t lapl_id) +{ + H5VL_object_t *vol_obj; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE8("e", "i*sIiIoh*xIui", loc_id, group_name, idx_type, order, n, oinfo, + fields, lapl_id); + + /* Check args */ + if(!group_name || !*group_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + if(fields & ~H5O_NATIVE_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + loc_params.type = H5VL_OBJECT_BY_IDX; + loc_params.loc_data.loc_by_idx.name = group_name; + loc_params.loc_data.loc_by_idx.idx_type = idx_type; + loc_params.loc_data.loc_by_idx.order = order; + loc_params.loc_data.loc_by_idx.n = n; + loc_params.loc_data.loc_by_idx.lapl_id = lapl_id; + loc_params.obj_type = H5I_get_type(loc_id); + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Retrieve the object's information */ + if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_NATIVE_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get native file format info for object") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_native_info_by_idx() */ /*------------------------------------------------------------------------- @@ -748,7 +865,7 @@ done: herr_t H5Oset_comment(hid_t obj_id, const char *comment) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -797,7 +914,7 @@ herr_t H5Oset_comment_by_name(hid_t loc_id, const char *name, const char *comment, hid_t lapl_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -850,9 +967,9 @@ done: ssize_t H5Oget_comment(hid_t obj_id, char *comment, size_t bufsize) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; - ssize_t ret_value = -1; /* Return value */ + ssize_t ret_value = -1; /* Return value */ FUNC_ENTER_API((-1)) H5TRACE3("Zs", "i*sz", obj_id, comment, bufsize); @@ -894,9 +1011,9 @@ ssize_t H5Oget_comment_by_name(hid_t loc_id, const char *name, char *comment, size_t bufsize, hid_t lapl_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; - ssize_t ret_value = -1; /* Return value */ + ssize_t ret_value = -1; /* Return value */ FUNC_ENTER_API((-1)) H5TRACE5("Zs", "i*s*szi", loc_id, name, comment, bufsize, lapl_id); @@ -929,7 +1046,7 @@ done: /*------------------------------------------------------------------------- - * Function: H5Ovisit2 + * Function: H5Ovisit3 * * Purpose: Recursively visit an object and all the objects reachable * from it. If the starting object is a group, all the objects @@ -964,12 +1081,12 @@ done: *------------------------------------------------------------------------- */ herr_t -H5Ovisit2(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, - H5O_iterate_t op, void *op_data, unsigned fields) +H5Ovisit3(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, + H5O_iterate2_t op, void *op_data, unsigned fields) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; - herr_t ret_value; /* Return value */ + herr_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE6("e", "iIiIox*xIu", obj_id, idx_type, order, op, op_data, fields); @@ -998,11 +1115,11 @@ H5Ovisit2(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, done: FUNC_LEAVE_API(ret_value) -} /* end H5Ovisit2() */ +} /* end H5Ovisit3() */ /*------------------------------------------------------------------------- - * Function: H5Ovisit_by_name2 + * Function: H5Ovisit_by_name3 * * Purpose: Recursively visit an object and all the objects reachable * from it. If the starting object is a group, all the objects @@ -1037,12 +1154,12 @@ done: *------------------------------------------------------------------------- */ herr_t -H5Ovisit_by_name2(hid_t loc_id, const char *obj_name, H5_index_t idx_type, - H5_iter_order_t order, H5O_iterate_t op, void *op_data, unsigned fields, hid_t lapl_id) +H5Ovisit_by_name3(hid_t loc_id, const char *obj_name, H5_index_t idx_type, + H5_iter_order_t order, H5O_iterate2_t op, void *op_data, unsigned fields, hid_t lapl_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ - H5VL_loc_params_t loc_params; - herr_t ret_value; /* Return value */ + H5VL_object_t *vol_obj; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + herr_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE8("e", "i*sIiIox*xIui", loc_id, obj_name, idx_type, order, op, op_data, @@ -1082,7 +1199,7 @@ H5Ovisit_by_name2(hid_t loc_id, const char *obj_name, H5_index_t idx_type, done: FUNC_LEAVE_API(ret_value) -} /* end H5Ovisit_by_name2() */ +} /* end H5Ovisit_by_name3() */ /*------------------------------------------------------------------------- @@ -1187,7 +1304,7 @@ done: herr_t H5Odisable_mdc_flushes(hid_t object_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1256,7 +1373,7 @@ done: herr_t H5Oenable_mdc_flushes(hid_t object_id) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1330,7 +1447,7 @@ done: herr_t H5Oare_mdc_flushes_disabled(hid_t object_id, hbool_t *are_disabled) { - H5VL_object_t *vol_obj; /* Object token of loc_id */ + H5VL_object_t *vol_obj; /* Object of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1361,3 +1478,125 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Oare_mdc_flushes_disabled() */ + +/*--------------------------------------------------------------------------- + * Function: H5Otoken_cmp + * + * Purpose: Compares two VOL connector object tokens + * + * Note: Both object tokens must be from the same VOL connector class + * + * Return: Success: Non-negative, with *cmp_value set to positive if + * token1 is greater than token2, negative if token2 + * is greater than token1 and zero if token1 and + * token2 are equal. + * Failure: Negative + * + *--------------------------------------------------------------------------- + */ +herr_t +H5Otoken_cmp(hid_t loc_id, const H5O_token_t *token1, const H5O_token_t *token2, + int *cmp_value) +{ + H5VL_object_t *vol_obj; /* VOL object for ID */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE4("e", "i*k*k*Is", loc_id, token1, token2, cmp_value); + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + if(NULL == cmp_value) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid cmp_value pointer") + + /* Compare the two tokens */ + if(H5VL_token_cmp(vol_obj, token1, token2, cmp_value) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTCOMPARE, FAIL, "object token comparison failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Otoken_cmp() */ + + +/*--------------------------------------------------------------------------- + * Function: H5Otoken_to_str + * + * Purpose: Serialize a connector's object token into a string + * + * Return: Success: Non-negative + * Failure: Negative + * + *--------------------------------------------------------------------------- + */ +herr_t +H5Otoken_to_str(hid_t loc_id, const H5O_token_t *token, char **token_str) +{ + H5VL_object_t *vol_obj; /* VOL object for ID */ + H5I_type_t vol_obj_type; /* VOL object's type */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE3("e", "i*k**s", loc_id, token, token_str); + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + if(NULL == token) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid token pointer") + if(NULL == token_str) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid token string pointer") + + /* Get object type */ + if((vol_obj_type = H5I_get_type(loc_id)) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get underlying VOL object type") + + /* Serialize the token */ + if(H5VL_token_to_str(vol_obj, vol_obj_type, token, token_str) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTSERIALIZE, FAIL, "object token serialization failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Otoken_to_str() */ + + +/*--------------------------------------------------------------------------- + * Function: H5Otoken_from_str + * + * Purpose: Deserialize a string into a connector object token + * + * Return: Success: Non-negative + * Failure: Negative + * + *--------------------------------------------------------------------------- + */ +herr_t +H5Otoken_from_str(hid_t loc_id, const char *token_str, H5O_token_t *token) +{ + H5VL_object_t *vol_obj; /* VOL object for ID */ + H5I_type_t vol_obj_type; /* VOL object's type */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE3("e", "i*s*k", loc_id, token_str, token); + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + if(NULL == token) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid token pointer") + if(NULL == token_str) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid token string pointer") + + /* Get object type */ + if((vol_obj_type = H5I_get_type(loc_id)) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get underlying VOL object type") + + /* Deserialize the token */ + if(H5VL_token_from_str(vol_obj, vol_obj_type, token_str, token) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTUNSERIALIZE, FAIL, "object token deserialization failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Otoken_from_str() */ + diff --git a/src/H5Oainfo.c b/src/H5Oainfo.c index 23aba09..2d95ee9 100644 --- a/src/H5Oainfo.c +++ b/src/H5Oainfo.c @@ -334,7 +334,7 @@ H5O__ainfo_free(void *mesg) *------------------------------------------------------------------------- */ static herr_t -H5O__ainfo_delete(H5F_t *f, H5O_t *open_oh, void *_mesg) +H5O__ainfo_delete(H5F_t *f, H5O_t H5_ATTR_NDEBUG_UNUSED *open_oh, void *_mesg) { H5O_ainfo_t *ainfo = (H5O_ainfo_t *)_mesg; herr_t ret_value = SUCCEED; /* Return value */ @@ -405,9 +405,9 @@ H5O_ainfo_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void H5_ATTR_UNUSE *------------------------------------------------------------------------- */ static void * -H5O__ainfo_copy_file(H5F_t *file_src, void *mesg_src, H5F_t *file_dst, +H5O__ainfo_copy_file(H5F_t H5_ATTR_NDEBUG_UNUSED *file_src, void *mesg_src, H5F_t *file_dst, hbool_t H5_ATTR_UNUSED *recompute_size, unsigned H5_ATTR_UNUSED *mesg_flags, - H5O_copy_t *cpy_info, void H5_ATTR_UNUSED *udata) + H5O_copy_t H5_ATTR_NDEBUG_UNUSED *cpy_info, void H5_ATTR_UNUSED *udata) { H5O_ainfo_t *ainfo_src = (H5O_ainfo_t *)mesg_src; H5O_ainfo_t *ainfo_dst = NULL; diff --git a/src/H5Oalloc.c b/src/H5Oalloc.c index c1f90cb..8850ef6 100644 --- a/src/H5Oalloc.c +++ b/src/H5Oalloc.c @@ -111,7 +111,7 @@ H5FL_EXTERN(H5O_cont_t); *------------------------------------------------------------------------- */ static herr_t -H5O__add_gap(H5F_t *f, H5O_t *oh, unsigned chunkno, hbool_t *chk_dirtied, +H5O__add_gap(H5F_t H5_ATTR_NDEBUG_UNUSED *f, H5O_t *oh, unsigned chunkno, hbool_t *chk_dirtied, size_t idx, uint8_t *new_gap_loc, size_t new_gap_size) { hbool_t merged_with_null; /* Whether the gap was merged with a null message */ diff --git a/src/H5Oattribute.c b/src/H5Oattribute.c index 71cbc1d..a4a746e 100644 --- a/src/H5Oattribute.c +++ b/src/H5Oattribute.c @@ -86,19 +86,6 @@ typedef struct { hbool_t found; /* Whether the attribute was found */ } H5O_iter_ren_t; -/* User data for iteration when iterating over attributes */ -typedef struct { - /* down */ - H5F_t *f; /* Pointer to file attribute is in */ - hid_t loc_id; /* ID of object being iterated over */ - unsigned skip; /* # of attributes to skip over */ - H5A_operator_t op; /* Callback routine for each attribute */ - void *op_data; /* User data for callback */ - - /* up */ - unsigned count; /* Count of attributes examined */ -} H5O_iter_itr_t; - /* User data for iteration when removing an attribute */ typedef struct { /* down */ @@ -109,15 +96,6 @@ typedef struct { hbool_t found; /* Found attribute to delete */ } H5O_iter_rm_t; -/* User data for iteration when checking if an attribute exists */ -typedef struct { - /* down */ - const char *name; /* Name of attribute to open */ - - /* up */ - hbool_t found; /* Found attribute */ -} H5O_iter_xst_t; - /********************/ /* Package Typedefs */ diff --git a/src/H5Ocache.c b/src/H5Ocache.c index 683d155..8bad181 100644 --- a/src/H5Ocache.c +++ b/src/H5Ocache.c @@ -201,7 +201,7 @@ H5O__cache_get_initial_load_size(void H5_ATTR_UNUSED *_udata, size_t *image_len) *------------------------------------------------------------------------- */ static herr_t -H5O__cache_get_final_load_size(const void *image, size_t image_len, +H5O__cache_get_final_load_size(const void *image, size_t H5_ATTR_NDEBUG_UNUSED image_len, void *_udata, size_t *actual_len) { H5O_cache_ud_t *udata = (H5O_cache_ud_t *)_udata; /* User data for callback */ @@ -306,7 +306,7 @@ H5O__cache_verify_chksum(const void *_image, size_t len, void *_udata) *------------------------------------------------------------------------- */ static void * -H5O__cache_deserialize(const void *image, size_t len, void *_udata, +H5O__cache_deserialize(const void *image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_udata, hbool_t *dirty) { H5O_t *oh = NULL; /* Object header read in */ @@ -763,7 +763,7 @@ H5O__cache_chk_verify_chksum(const void *_image, size_t len, void *_udata) *------------------------------------------------------------------------- */ static void * -H5O__cache_chk_deserialize(const void *image, size_t len, void *_udata, +H5O__cache_chk_deserialize(const void *image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_udata, hbool_t *dirty) { H5O_chunk_proxy_t *chk_proxy = NULL; /* Chunk proxy object */ diff --git a/src/H5Ocopy.c b/src/H5Ocopy.c index 55013c9..469a9e0 100644 --- a/src/H5Ocopy.c +++ b/src/H5Ocopy.c @@ -88,7 +88,7 @@ static herr_t H5O__copy_obj(H5G_loc_t *src_loc, H5G_loc_t *dst_loc, static herr_t H5O__copy_free_comm_dt_cb(void *item, void *key, void *op_data); static int H5O__copy_comm_dt_cmp(const void *dt1, const void *dt2); static herr_t H5O__copy_search_comm_dt_cb(hid_t group, const char *name, - const H5L_info_t *linfo, void *udata); + const H5L_info2_t *linfo, void *udata); static htri_t H5O__copy_search_comm_dt(H5F_t *file_src, H5O_t *oh_src, H5O_loc_t *oloc_dst/*in, out*/, H5O_copy_t *cpy_info); static herr_t H5O__copy_insert_comm_dt(H5F_t *file_src, H5O_t *oh_src, @@ -197,9 +197,9 @@ herr_t H5Ocopy(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name, hid_t ocpypl_id, hid_t lcpl_id) { - H5VL_object_t *vol_obj1 = NULL; /* object token of src_id */ + H5VL_object_t *vol_obj1 = NULL; /* object of src_id */ H5VL_loc_params_t loc_params1; - H5VL_object_t *vol_obj2 = NULL; /* object token of dst_id */ + H5VL_object_t *vol_obj2 = NULL; /* object of dst_id */ H5VL_loc_params_t loc_params2; herr_t ret_value = SUCCEED; /* Return value */ @@ -1523,7 +1523,7 @@ done: */ static herr_t H5O__copy_search_comm_dt_cb(hid_t H5_ATTR_UNUSED group, const char *name, - const H5L_info_t *linfo, void *_udata) + const H5L_info2_t *linfo, void *_udata) { H5O_copy_search_comm_dt_ud_t *udata = (H5O_copy_search_comm_dt_ud_t *)_udata; /* Skip list of dtypes in dest file */ H5G_loc_t obj_loc; /* Location of object */ diff --git a/src/H5Ocopy_ref.c b/src/H5Ocopy_ref.c index b835f8e..0de661f 100644 --- a/src/H5Ocopy_ref.c +++ b/src/H5Ocopy_ref.c @@ -38,6 +38,8 @@ #include "H5Opkg.h" /* Object headers */ #include "H5Rpkg.h" /* References */ +#include "H5VLnative_private.h" /* Native VOL connector */ + /****************/ /* Local Macros */ @@ -165,7 +167,7 @@ H5O__copy_expand_ref_object1(H5O_loc_t *src_oloc, const void *buf_src, size_t buf_size = H5R_OBJ_REF_BUF_SIZE; size_t i; /* Local index variable */ size_t token_size = H5F_SIZEOF_ADDR(src_oloc->file); - herr_t ret_value = SUCCEED; + herr_t ret_value = SUCCEED; FUNC_ENTER_STATIC @@ -173,8 +175,7 @@ H5O__copy_expand_ref_object1(H5O_loc_t *src_oloc, const void *buf_src, for(i = 0; i < ref_count; i++) { const unsigned char *src_buf = (const unsigned char *)&src_ref[i]; unsigned char *dst_buf = (unsigned char *)&dst_ref[i]; - H5VL_token_t tmp_token = { 0 }; - uint8_t *p; + H5O_token_t tmp_token = { 0 }; /* If data is not initialized, copy zeros and skip */ if(0 == HDmemcmp(src_buf, zeros, buf_size)) { @@ -185,8 +186,9 @@ H5O__copy_expand_ref_object1(H5O_loc_t *src_oloc, const void *buf_src, /* Set up for the object copy for the reference */ if(H5R__decode_token_obj_compat(src_buf, &buf_size, &tmp_token, token_size) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to decode src object address") - p = (uint8_t *)&tmp_token; - H5F_addr_decode(src_oloc->file, (const uint8_t **)&p, &src_oloc->addr); + if(H5VL_native_token_to_addr(src_oloc->file, H5I_FILE, tmp_token, &src_oloc->addr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") + if(!H5F_addr_defined(src_oloc->addr) || src_oloc->addr == 0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "undefined reference pointer") dst_oloc->addr = HADDR_UNDEF; @@ -196,9 +198,9 @@ H5O__copy_expand_ref_object1(H5O_loc_t *src_oloc, const void *buf_src, HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to copy object") /* Set the object reference info for the destination file */ - p = (uint8_t *)&tmp_token; - H5F_addr_encode(dst_oloc->file, &p, dst_oloc->addr); - if(H5R__encode_token_obj_compat((const H5VL_token_t *)&tmp_token, token_size, dst_buf, &buf_size) < 0) + if(H5VL_native_addr_to_token(dst_oloc->file, H5I_FILE, dst_oloc->addr, &tmp_token) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSERIALIZE, FAIL, "can't serialize address into object token") + if(H5R__encode_token_obj_compat((const H5O_token_t *)&tmp_token, token_size, dst_buf, &buf_size) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to encode dst object address") } /* end for */ @@ -365,25 +367,25 @@ H5O__copy_expand_ref_object2(H5O_loc_t *src_oloc, hid_t tid_src, H5T_t *dt_src, for(i = 0; i < ref_count; i++) { H5R_ref_t *ref_ptr = (H5R_ref_t *)conv_buf; H5R_ref_priv_t *ref = (H5R_ref_priv_t *)&ref_ptr[i]; - H5VL_token_t tmp_token = { 0 }; - uint8_t *p; + H5O_token_t tmp_token = { 0 }; /* Get src object address */ if(H5R__get_obj_token(ref, &tmp_token, &token_size) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to get object token") - p = (uint8_t *)&tmp_token; - H5F_addr_decode(src_oloc->file, (const uint8_t **)&p, &src_oloc->addr); + if(H5VL_native_token_to_addr(src_oloc->file, H5I_FILE, tmp_token, &src_oloc->addr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") /* Attempt to copy object from source to destination file */ if(H5O__copy_obj_by_ref(src_oloc, dst_oloc, dst_root_loc, cpy_info) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to copy object") /* Set dst object address */ - p = (uint8_t *)&tmp_token; - H5F_addr_encode(dst_oloc->file, &p, dst_oloc->addr); - if(H5R__set_obj_token(ref, (const H5VL_token_t *)&tmp_token, token_size) < 0) + if(H5VL_native_addr_to_token(dst_oloc->file, H5I_FILE, dst_oloc->addr, &tmp_token) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSERIALIZE, FAIL, "can't serialize address into object token") + if(H5R__set_obj_token(ref, (const H5O_token_t *)&tmp_token, token_size) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "unable to set object token") - if(H5R__set_loc_id(ref, dst_loc_id, TRUE) < 0) + /* Do not set app_ref since references are released once the copy is done */ + if(H5R__set_loc_id(ref, dst_loc_id, TRUE, FALSE) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "unable to set destination loc id") } /* end for */ diff --git a/src/H5Odeprec.c b/src/H5Odeprec.c index e4e8f96..e43213d 100644 --- a/src/H5Odeprec.c +++ b/src/H5Odeprec.c @@ -39,6 +39,7 @@ #include "H5VLnative_private.h" /* Native VOL connector */ +#ifndef H5_NO_DEPRECATED_SYMBOLS /****************/ /* Local Macros */ @@ -49,6 +50,13 @@ /* Local Typedefs */ /******************/ +/* Adapter for using deprecated H5Ovisit1 callbacks with the VOL */ +typedef struct H5O_visit1_adapter_t { + H5O_iterate1_t real_op; /* Application callback to invoke */ + unsigned fields; /* Original fields passed to H5Ovisit */ + void *real_op_data; /* Application op_data */ +} H5O_visit1_adapter_t; + /********************/ /* Package Typedefs */ @@ -58,7 +66,10 @@ /********************/ /* Local Prototypes */ /********************/ - +static herr_t H5O__reset_info1(H5O_info1_t *oinfo); +static herr_t H5O__iterate1_adapter(hid_t obj_id, const char *name, const H5O_info2_t *oinfo2, void *op_data); +static herr_t H5O__get_info_old(H5VL_object_t *vol_obj, H5VL_loc_params_t *loc_params, + H5O_info1_t *oinfo, unsigned fields); /*********************/ /* Package Variables */ @@ -75,7 +86,295 @@ /*******************/ -#ifndef H5_NO_DEPRECATED_SYMBOLS +/*------------------------------------------------------------------------- + * Function: H5O__reset_info1 + * + * Purpose: Resets/initializes an H5O_info1_t struct. + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +static herr_t +H5O__reset_info1(H5O_info1_t *oinfo) +{ + FUNC_ENTER_STATIC_NOERR; + + /* Reset the passed-in info struct */ + HDmemset(oinfo, 0, sizeof(H5O_info1_t)); + oinfo->type = H5O_TYPE_UNKNOWN; + oinfo->addr = HADDR_UNDEF; + + FUNC_LEAVE_NOAPI(SUCCEED); +} /* end H5O__reset_info1() */ + + +/*------------------------------------------------------------------------- + * Function: H5O__iterate1_adapter + * + * Purpose: Retrieve information about an object, according to the order + * of an index. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Quincey Koziol + * November 26 2006 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5O__iterate1_adapter(hid_t obj_id, const char *name, const H5O_info2_t *oinfo2, + void *op_data) +{ + H5O_visit1_adapter_t *shim_data = (H5O_visit1_adapter_t *)op_data; + H5O_info1_t oinfo; /* Deprecated object info struct */ + unsigned dm_fields; /* Fields for data model query */ + unsigned nat_fields; /* Fields for native query */ + H5VL_object_t *vol_obj; /* Object of obj_id */ + H5VL_loc_params_t loc_params; /* Location parameters for VOL callback */ + herr_t ret_value = H5_ITER_CONT; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity check */ + HDassert(oinfo2); + HDassert(op_data); + + /* Reset the legacy info struct */ + if(H5O__reset_info1(&oinfo) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't reset object data struct") + + /* Check for retrieving data model information */ + dm_fields = shim_data->fields & (H5O_INFO_BASIC | H5O_INFO_TIME | H5O_INFO_NUM_ATTRS); + if(dm_fields) { + /* Set the data model fields */ + if(shim_data->fields & H5O_INFO_BASIC) { + oinfo.fileno = oinfo2->fileno; + oinfo.type = oinfo2->type; + oinfo.rc = oinfo2->rc; + + /* Deserialize VOL object token into object address */ + if(H5VLnative_token_to_addr(obj_id, oinfo2->token, &oinfo.addr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") + } + if(shim_data->fields & H5O_INFO_TIME) { + oinfo.atime = oinfo2->atime; + oinfo.mtime = oinfo2->mtime; + oinfo.ctime = oinfo2->ctime; + oinfo.btime = oinfo2->btime; + } + if(shim_data->fields & H5O_INFO_NUM_ATTRS) + oinfo.num_attrs = oinfo2->num_attrs; + } + + /* Fill out location struct */ + loc_params.type = H5VL_OBJECT_BY_NAME; + loc_params.loc_data.loc_by_name.name = name; + loc_params.loc_data.loc_by_name.lapl_id = H5P_LINK_ACCESS_DEFAULT; + loc_params.obj_type = H5I_get_type(obj_id); + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(obj_id))) + HGOTO_ERROR(H5E_OHDR, H5E_BADTYPE, H5_ITER_ERROR, "invalid location identifier") + + /* Check for retrieving native information */ + nat_fields = shim_data->fields & (H5O_INFO_HDR | H5O_INFO_META_SIZE); + if(nat_fields) { + H5O_native_info_t nat_info; /* Native object info */ + + /* Retrieve the object's native information */ + if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_NATIVE_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, &nat_info, nat_fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get native info for object") + + /* Set the native fields */ + if(shim_data->fields & H5O_INFO_HDR) + HDmemcpy(&(oinfo.hdr), &(nat_info.hdr), sizeof(H5O_hdr_info_t)); + if(shim_data->fields & H5O_INFO_META_SIZE) { + HDmemcpy(&(oinfo.meta_size.obj), &(nat_info.meta_size.obj), sizeof(H5_ih_info_t)); + HDmemcpy(&(oinfo.meta_size.attr), &(nat_info.meta_size.attr), sizeof(H5_ih_info_t)); + } + } + + /* Invoke the application callback */ + ret_value = (shim_data->real_op)(obj_id, name, &oinfo, shim_data->real_op_data); + +done: + FUNC_LEAVE_NOAPI(ret_value); +} /* end H5O__iterate1_adapter() */ + + +/*------------------------------------------------------------------------- + * Function: H5O__get_info_old + * + * Purpose: Retrieve deprecated info about an object. + * + * Return: SUCCEED/FAIL + * + * Programmer: Quincey Koziol + * December 21 2019 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5O__get_info_old(H5VL_object_t *vol_obj, H5VL_loc_params_t *loc_params, + H5O_info1_t *oinfo, unsigned fields) +{ + unsigned dm_fields; /* Fields for data model query */ + unsigned nat_fields; /* Fields for native query */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity check */ + HDassert(vol_obj); + HDassert(loc_params); + + /* Reset the passed-in info struct */ + if(H5O__reset_info1(oinfo) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't reset object data struct") + + /* Check for retrieving data model information */ + dm_fields = fields & (H5O_INFO_BASIC | H5O_INFO_TIME | H5O_INFO_NUM_ATTRS); + if(dm_fields) { + H5O_info2_t dm_info; /* Data model object info */ + + /* Retrieve the object's data model information */ + if(H5VL_object_get(vol_obj, loc_params, H5VL_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &dm_info, dm_fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get data model info for object") + + /* Set the data model fields */ + if(fields & H5O_INFO_BASIC) { + void *vol_obj_data; + + if(NULL == (vol_obj_data = H5VL_object_data(vol_obj))) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get underlying VOL object") + + oinfo->fileno = dm_info.fileno; + oinfo->type = dm_info.type; + oinfo->rc = dm_info.rc; + + /* Deserialize VOL object token into object address */ + if(H5VL_native_token_to_addr(vol_obj_data, loc_params->obj_type, dm_info.token, &oinfo->addr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") + } /* end if */ + if(fields & H5O_INFO_TIME) { + oinfo->atime = dm_info.atime; + oinfo->mtime = dm_info.mtime; + oinfo->ctime = dm_info.ctime; + oinfo->btime = dm_info.btime; + } /* end if */ + if(fields & H5O_INFO_NUM_ATTRS) + oinfo->num_attrs = dm_info.num_attrs; + } /* end if */ + + /* Check for retrieving native information */ + nat_fields = fields & (H5O_INFO_HDR | H5O_INFO_META_SIZE); + if(nat_fields) { + H5O_native_info_t nat_info; /* Native object info */ + + /* Retrieve the object's native information */ + if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_NATIVE_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, loc_params, &nat_info, nat_fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get native info for object") + + /* Set the native fields */ + if(fields & H5O_INFO_HDR) + HDmemcpy(&(oinfo->hdr), &(nat_info.hdr), sizeof(H5O_hdr_info_t)); + if(fields & H5O_INFO_META_SIZE) { + HDmemcpy(&(oinfo->meta_size.obj), &(nat_info.meta_size.obj), sizeof(H5_ih_info_t)); + HDmemcpy(&(oinfo->meta_size.attr), &(nat_info.meta_size.attr), sizeof(H5_ih_info_t)); + } /* end if */ + } /* end if */ + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5O__get_info_old() */ + + +/*------------------------------------------------------------------------- + * Function: H5Oopen_by_addr + * + * Purpose: Warning! This function is EXTREMELY DANGEROUS! + * Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA, + * and other VERY BAD THINGS! + * + * This function opens an object using its address within the + * HDF5 file, similar to an HDF5 hard link. The open object + * is identical to an object opened with H5Oopen() and should + * be closed with H5Oclose() or a type-specific closing + * function (such as H5Gclose() ). + * + * This function is very dangerous if called on an invalid + * address. For this reason, H5Oincr_refcount() should be + * used to prevent HDF5 from deleting any object that is + * referenced by address (e.g. by a user-defined link). + * H5Odecr_refcount() should be used when the object is + * no longer being referenced by address (e.g. when the UD link + * is deleted). + * + * The address of the HDF5 file on disk has no effect on + * H5Oopen_by_addr(), nor does the use of any unusual file + * drivers. The "address" is really the offset within the + * HDF5 file, and HDF5's file drivers will transparently + * map this to an address on disk for the filesystem. + * + * Return: Success: An open object identifier + * Failure: H5I_INVALID_HID + * + * Programmer: James Laird + * July 14 2006 + * + *------------------------------------------------------------------------- + */ +hid_t +H5Oopen_by_addr(hid_t loc_id, haddr_t addr) +{ + H5VL_object_t *vol_obj; /* Object of loc_id */ + H5I_type_t vol_obj_type = H5I_BADID;/* Object type of loc_id */ + H5I_type_t opened_type; /* Opened object type */ + void *opened_obj = NULL; /* Opened object */ + H5VL_loc_params_t loc_params; /* Location parameters */ + H5O_token_t obj_token = {0}; /* Object token */ + hbool_t is_native_vol_obj; + hid_t ret_value = H5I_INVALID_HID; /* Return value */ + + FUNC_ENTER_API(H5I_INVALID_HID) + H5TRACE2("i", "ia", loc_id, addr); + + /* Get the location object */ + if(NULL == (vol_obj = (H5VL_object_t *)H5I_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier") + + /* Get object type */ + if((vol_obj_type = H5I_get_type(loc_id)) < 0) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, H5I_INVALID_HID, "can't determine if VOL object is native connector object") + if(is_native_vol_obj) { + /* This is a native-specific routine that requires serialization of the token */ + if(H5VLnative_addr_to_token(loc_id, addr, &obj_token) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSERIALIZE, H5I_INVALID_HID, "can't serialize address into object token") + } /* end if */ + else + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, H5I_INVALID_HID, "H5Oopen_by_addr is only meant to be used with the native VOL connector") + + loc_params.type = H5VL_OBJECT_BY_TOKEN; + loc_params.loc_data.loc_by_token.token = &obj_token; + loc_params.obj_type = vol_obj_type; + + /* Open the object */ + if(NULL == (opened_obj = H5VL_object_open(vol_obj, &loc_params, &opened_type, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL))) + HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, H5I_INVALID_HID, "unable to open object") + + /* Register the object's ID */ + if((ret_value = H5VL_register(opened_type, opened_obj, vol_obj->connector, TRUE)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to atomize object handle") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oopen_by_addr() */ /*------------------------------------------------------------------------- @@ -89,9 +388,9 @@ *------------------------------------------------------------------------- */ herr_t -H5Oget_info1(hid_t loc_id, H5O_info_t *oinfo) +H5Oget_info1(hid_t loc_id, H5O_info1_t *oinfo) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -111,8 +410,8 @@ H5Oget_info1(hid_t loc_id, H5O_info_t *oinfo) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Retrieve the object's information */ - if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, oinfo, H5O_INFO_ALL) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") + if(H5O__get_info_old(vol_obj, &loc_params, oinfo, H5O_INFO_ALL) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get deprecated info for object") done: FUNC_LEAVE_API(ret_value) @@ -130,9 +429,9 @@ done: *------------------------------------------------------------------------- */ herr_t -H5Oget_info_by_name1(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id) +H5Oget_info_by_name1(hid_t loc_id, const char *name, H5O_info1_t *oinfo, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -162,8 +461,8 @@ H5Oget_info_by_name1(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t la HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Retrieve the object's information */ - if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, oinfo, H5O_INFO_ALL) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object: '%s'", name) + if(H5O__get_info_old(vol_obj, &loc_params, oinfo, H5O_INFO_ALL) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get deprecated info for object") done: FUNC_LEAVE_API(ret_value) @@ -186,9 +485,9 @@ done: */ herr_t H5Oget_info_by_idx1(hid_t loc_id, const char *group_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, hid_t lapl_id) + H5_iter_order_t order, hsize_t n, H5O_info1_t *oinfo, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -223,8 +522,8 @@ H5Oget_info_by_idx1(hid_t loc_id, const char *group_name, H5_index_t idx_type, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Retrieve the object's information */ - if(H5VL_object_optional(vol_obj, H5VL_NATIVE_OBJECT_GET_INFO, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &loc_params, oinfo, H5O_INFO_ALL) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get info for object") + if(H5O__get_info_old(vol_obj, &loc_params, oinfo, H5O_INFO_ALL) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get deprecated info for object") done: FUNC_LEAVE_API(ret_value) @@ -232,6 +531,197 @@ done: /*------------------------------------------------------------------------- + * Function: H5Oget_info2 + * + * Purpose: Retrieve information about an object. + * + * NOTE: Add a parameter "fields" to indicate selection of object info. + * + * Return: SUCCEED/FAIL + * + * Programmer: Neil Fortner + * July 7 2010 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_info2(hid_t loc_id, H5O_info1_t *oinfo, unsigned fields) +{ + H5VL_object_t *vol_obj; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + hbool_t is_native_vol_obj; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE3("e", "i*xIu", loc_id, oinfo, fields); + + /* Check args */ + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "oinfo parameter cannot be NULL") + if(fields & ~H5O_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") + + /* Set location struct fields */ + loc_params.type = H5VL_OBJECT_BY_SELF; + loc_params.obj_type = H5I_get_type(loc_id); + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, H5I_INVALID_HID, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, H5I_INVALID_HID, "H5Oget_info2 is only meant to be used with the native VOL connector") + + /* Retrieve deprecated info struct */ + if(H5O__get_info_old(vol_obj, &loc_params, oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get deprecated info for object") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_info2() */ + + +/*------------------------------------------------------------------------- + * Function: H5Oget_info_by_name2 + * + * Purpose: Retrieve information about an object + * + * NOTE: Add a parameter "fields" to indicate selection of object info. + * + * Return: SUCCEED/FAIL + * + * Programmer: Neil Fortner + * July 7 2010 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_info_by_name2(hid_t loc_id, const char *name, H5O_info1_t *oinfo, + unsigned fields, hid_t lapl_id) +{ + H5VL_object_t *vol_obj; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + hbool_t is_native_vol_obj; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE5("e", "i*s*xIui", loc_id, name, oinfo, fields, lapl_id); + + /* Check args */ + if(!name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "name parameter cannot be NULL") + if(!*name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "name parameter cannot be an empty string") + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "oinfo parameter cannot be NULL") + if(fields & ~H5O_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + /* Fill out location struct */ + loc_params.type = H5VL_OBJECT_BY_NAME; + loc_params.loc_data.loc_by_name.name = name; + loc_params.loc_data.loc_by_name.lapl_id = lapl_id; + loc_params.obj_type = H5I_get_type(loc_id); + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, H5I_INVALID_HID, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, H5I_INVALID_HID, "H5Oget_info_by_name2 is only meant to be used with the native VOL connector") + + /* Retrieve deprecated info struct */ + if(H5O__get_info_old(vol_obj, &loc_params, oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get deprecated info for object") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_info_by_name2() */ + + +/*------------------------------------------------------------------------- + * Function: H5Oget_info_by_idx2 + * + * Purpose: Retrieve information about an object, according to the order + * of an index. + * + * NOTE: Add a parameter "fields" to indicate selection of object info. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Quincey Koziol + * November 26 2006 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Oget_info_by_idx2(hid_t loc_id, const char *group_name, H5_index_t idx_type, + H5_iter_order_t order, hsize_t n, H5O_info1_t *oinfo, unsigned fields, hid_t lapl_id) +{ + H5VL_object_t *vol_obj; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + hbool_t is_native_vol_obj; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE8("e", "i*sIiIoh*xIui", loc_id, group_name, idx_type, order, n, oinfo, + fields, lapl_id); + + /* Check args */ + if(!group_name || !*group_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!oinfo) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") + if(fields & ~H5O_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + loc_params.type = H5VL_OBJECT_BY_IDX; + loc_params.loc_data.loc_by_idx.name = group_name; + loc_params.loc_data.loc_by_idx.idx_type = idx_type; + loc_params.loc_data.loc_by_idx.order = order; + loc_params.loc_data.loc_by_idx.n = n; + loc_params.loc_data.loc_by_idx.lapl_id = lapl_id; + loc_params.obj_type = H5I_get_type(loc_id); + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, H5I_INVALID_HID, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, H5I_INVALID_HID, "H5Oget_info_by_idx2 is only meant to be used with the native VOL connector") + + /* Retrieve deprecated info struct */ + if(H5O__get_info_old(vol_obj, &loc_params, oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't get deprecated info for object") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Oget_info_by_idx2() */ + + +/*------------------------------------------------------------------------- * Function: H5Ovisit1 * * Purpose: Recursively visit an object and all the objects reachable @@ -265,10 +755,11 @@ done: */ herr_t H5Ovisit1(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, - H5O_iterate_t op, void *op_data) + H5O_iterate1_t op, void *op_data) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; + H5O_visit1_adapter_t shim_data; /* Adapter for passing app callback & user data */ herr_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) @@ -290,8 +781,13 @@ H5Ovisit1(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, loc_params.type = H5VL_OBJECT_BY_SELF; loc_params.obj_type = H5I_get_type(obj_id); + /* Set up adapter */ + shim_data.real_op = op; + shim_data.fields = H5O_INFO_ALL; + shim_data.real_op_data = op_data; + /* Visit the objects */ - if((ret_value = H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_VISIT, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, (int)idx_type, (int)order, op, op_data, H5O_INFO_ALL)) < 0) + if((ret_value = H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_VISIT, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, (int)idx_type, (int)order, H5O__iterate1_adapter, (void *)&shim_data, H5O_INFO_ALL)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object visitation failed") done: @@ -333,10 +829,11 @@ done: */ herr_t H5Ovisit_by_name1(hid_t loc_id, const char *obj_name, H5_index_t idx_type, - H5_iter_order_t order, H5O_iterate_t op, void *op_data, hid_t lapl_id) + H5_iter_order_t order, H5O_iterate1_t op, void *op_data, hid_t lapl_id) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ - H5VL_loc_params_t loc_params; + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + H5O_visit1_adapter_t shim_data; /* Adapter for passing app callback & user data */ herr_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) @@ -369,13 +866,203 @@ H5Ovisit_by_name1(hid_t loc_id, const char *obj_name, H5_index_t idx_type, loc_params.loc_data.loc_by_name.lapl_id = lapl_id; loc_params.obj_type = H5I_get_type(loc_id); + /* Set up adapter */ + shim_data.real_op = op; + shim_data.fields = H5O_INFO_ALL; + shim_data.real_op_data = op_data; + /* Visit the objects */ - if((ret_value = H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_VISIT, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, (int)idx_type, (int)order, op, op_data, H5O_INFO_ALL)) < 0) + if((ret_value = H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_VISIT, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, (int)idx_type, (int)order, H5O__iterate1_adapter, (void *)&shim_data, H5O_INFO_ALL)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object visitation failed") done: FUNC_LEAVE_API(ret_value) } /* end H5Ovisit_by_name1() */ + +/*------------------------------------------------------------------------- + * Function: H5Ovisit2 + * + * Purpose: Recursively visit an object and all the objects reachable + * from it. If the starting object is a group, all the objects + * linked to from that group will be visited. Links within + * each group are visited according to the order within the + * specified index (unless the specified index does not exist for + * a particular group, then the "name" index is used). + * + * NOTE: Soft links and user-defined links are ignored during + * this operation. + * + * NOTE: Each _object_ reachable from the initial group will only + * be visited once. If multiple hard links point to the same + * object, the first link to the object's path (according to the + * iteration index and iteration order given) will be used to in + * the callback about the object. + * + * NOTE: Add a a parameter "fields" to indicate selection of + * object info to be retrieved to the callback "op". + * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. + * + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. + * + * Programmer: Quincey Koziol + * November 25 2007 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Ovisit2(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, + H5O_iterate1_t op, void *op_data, unsigned fields) +{ + H5VL_object_t *vol_obj; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + H5O_visit1_adapter_t shim_data; /* Adapter for passing app callback & user data */ + hbool_t is_native_vol_obj; + herr_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE6("e", "iIiIox*xIu", obj_id, idx_type, order, op, op_data, fields); + + /* Check args */ + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") + if(fields & ~H5O_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(obj_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, H5I_INVALID_HID, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, H5I_INVALID_HID, "H5Ovisit2 is only meant to be used with the native VOL connector") + + /* Set location parameters */ + loc_params.type = H5VL_OBJECT_BY_SELF; + loc_params.obj_type = H5I_get_type(obj_id); + + /* Set up adapter */ + shim_data.real_op = op; + shim_data.fields = fields; + shim_data.real_op_data = op_data; + + /* Visit the objects */ + if((ret_value = H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_VISIT, H5P_DATASET_XFER_DEFAULT, + H5_REQUEST_NULL, (int)idx_type, (int)order, H5O__iterate1_adapter, (void *)&shim_data, fields)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object iteration failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Ovisit2() */ + + +/*------------------------------------------------------------------------- + * Function: H5Ovisit_by_name2 + * + * Purpose: Recursively visit an object and all the objects reachable + * from it. If the starting object is a group, all the objects + * linked to from that group will be visited. Links within + * each group are visited according to the order within the + * specified index (unless the specified index does not exist for + * a particular group, then the "name" index is used). + * + * NOTE: Soft links and user-defined links are ignored during + * this operation. + * + * NOTE: Each _object_ reachable from the initial group will only + * be visited once. If multiple hard links point to the same + * object, the first link to the object's path (according to the + * iteration index and iteration order given) will be used to in + * the callback about the object. + * + * NOTE: Add a a parameter "fields" to indicate selection of + * object info to be retrieved to the callback "op". + * + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. + * + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. + * + * Programmer: Quincey Koziol + * November 24 2007 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Ovisit_by_name2(hid_t loc_id, const char *obj_name, H5_index_t idx_type, + H5_iter_order_t order, H5O_iterate1_t op, void *op_data, unsigned fields, hid_t lapl_id) +{ + H5VL_object_t *vol_obj; /* Object of loc_id */ + H5VL_loc_params_t loc_params; + H5O_visit1_adapter_t shim_data; /* Adapter for passing app callback & user data */ + hbool_t is_native_vol_obj; + herr_t ret_value; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE8("e", "i*sIiIox*xIui", loc_id, obj_name, idx_type, order, op, op_data, + fields, lapl_id); + + /* Check args */ + if(!obj_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "obj_name parameter cannot be NULL") + if(!*obj_name) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "obj_name parameter cannot be an empty string") + if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") + if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") + if(!op) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback operator specified") + if(fields & ~H5O_INFO_ALL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid fields") + + /* Verify access property list and set up collective metadata if appropriate */ + if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set access property list info") + + /* Get the location object */ + if(NULL == (vol_obj = H5VL_vol_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Check if the VOL object is a native VOL connector object */ + if(H5VL_object_is_native(vol_obj, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, H5I_INVALID_HID, "can't determine if VOL object is native connector object") + if(!is_native_vol_obj) + HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, H5I_INVALID_HID, "H5Ovisit_by_name2 is only meant to be used with the native VOL connector") + + /* Set location parameters */ + loc_params.type = H5VL_OBJECT_BY_NAME; + loc_params.loc_data.loc_by_name.name = obj_name; + loc_params.loc_data.loc_by_name.lapl_id = lapl_id; + loc_params.obj_type = H5I_get_type(loc_id); + + /* Set up adapter */ + shim_data.real_op = op; + shim_data.fields = fields; + shim_data.real_op_data = op_data; + + /* Visit the objects */ + if((ret_value = H5VL_object_specific(vol_obj, &loc_params, H5VL_OBJECT_VISIT, H5P_DATASET_XFER_DEFAULT, + H5_REQUEST_NULL, (int)idx_type, (int)order, H5O__iterate1_adapter, (void *)&shim_data, fields)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "object iteration failed") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Ovisit_by_name2() */ + #endif /* H5_NO_DEPRECATED_SYMBOLS */ diff --git a/src/H5Oflush.c b/src/H5Oflush.c index a03cfa1..b441840 100644 --- a/src/H5Oflush.c +++ b/src/H5Oflush.c @@ -72,7 +72,7 @@ static herr_t H5O__refresh_metadata_close(hid_t oid, H5O_loc_t oloc, herr_t H5Oflush(hid_t obj_id) { - H5VL_object_t *vol_obj = NULL; /* Object token */ + H5VL_object_t *vol_obj = NULL; /* Object of obj_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -236,7 +236,7 @@ done: herr_t H5Orefresh(hid_t oid) { - H5VL_object_t *vol_obj = NULL; /* Object token */ + H5VL_object_t *vol_obj = NULL; /* Object of oid */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5Oint.c b/src/H5Oint.c index a16102a..d5a3a71 100644 --- a/src/H5Oint.c +++ b/src/H5Oint.c @@ -43,6 +43,8 @@ #include "H5Opkg.h" /* Object headers */ #include "H5VLprivate.h" /* Virtual Object Layer */ +#include "H5VLnative_private.h" /* Native VOL connector */ + /****************/ /* Local Macros */ @@ -58,7 +60,7 @@ typedef struct { hid_t obj_id; /* The ID for the starting group */ H5G_loc_t *start_loc; /* Location of starting group */ H5SL_t *visited; /* Skip list for tracking visited nodes */ - H5O_iterate_t op; /* Application callback */ + H5O_iterate2_t op; /* Application callback */ void *op_data; /* Application's op data */ unsigned fields; /* Selection of object info */ } H5O_iter_visit_ud_t; @@ -78,9 +80,11 @@ static herr_t H5O__obj_type_real(const H5O_t *oh, H5O_type_t *obj_type); static herr_t H5O__get_hdr_info_real(const H5O_t *oh, H5O_hdr_info_t *hdr); static herr_t H5O__free_visit_visited(void *item, void *key, void *operator_data/*in,out*/); -static herr_t H5O__visit_cb(hid_t group, const char *name, const H5L_info_t *linfo, +static herr_t H5O__visit_cb(hid_t group, const char *name, const H5L_info2_t *linfo, void *_udata); static const H5O_obj_class_t *H5O__obj_class_real(const H5O_t *oh); +static herr_t H5O__reset_info2(H5O_info2_t *oinfo); + /*********************/ /* Package Variables */ @@ -151,6 +155,13 @@ H5FL_BLK_DEFINE(chunk_image); /* Declare external the free list for H5O_cont_t sequences */ H5FL_SEQ_EXTERN(H5O_cont_t); +/* The canonical 'undefined' token */ +const H5O_token_t H5O_TOKEN_UNDEF_g = {{ + 255, 255, 255, 255, + 255, 255, 255, 255, + 255, 255, 255, 255, + 255, 255, 255, 255}}; + /*****************************/ /* Library Private Variables */ @@ -2155,9 +2166,7 @@ H5O__get_hdr_info_real(const H5O_t *oh, H5O_hdr_info_t *hdr) /*------------------------------------------------------------------------- * Function: H5O_get_info * - * Purpose: Retrieve the information for an object - * - * Note: Add a parameter "fields" to indicate selection of object info. + * Purpose: Retrieve the data model information for an object * * Return: Success: Non-negative * Failure: Negative @@ -2168,7 +2177,7 @@ H5O__get_hdr_info_real(const H5O_t *oh, H5O_hdr_info_t *hdr) *------------------------------------------------------------------------- */ herr_t -H5O_get_info(const H5O_loc_t *loc, H5O_info_t *oinfo, unsigned fields) +H5O_get_info(const H5O_loc_t *loc, H5O_info2_t *oinfo, unsigned fields) { const H5O_obj_class_t *obj_class; /* Class of object for header */ H5O_t *oh = NULL; /* Object header */ @@ -2189,15 +2198,17 @@ H5O_get_info(const H5O_loc_t *loc, H5O_info_t *oinfo, unsigned fields) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to determine object class") /* Reset the object info structure */ - HDmemset(oinfo, 0, sizeof(*oinfo)); + if(H5O__reset_info2(oinfo) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't reset object data struct") /* Get basic information, if requested */ if(fields & H5O_INFO_BASIC) { /* Retrieve the file's fileno */ H5F_GET_FILENO(loc->file, oinfo->fileno); - /* Set the object's address */ - oinfo->addr = loc->addr; + /* Set the object's address into the token */ + if(H5VL_native_addr_to_token(loc->file, H5I_FILE, loc->addr, &oinfo->token) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSERIALIZE, FAIL, "can't serialize address into object token") /* Retrieve the type of the object */ oinfo->type = obj_class->type; @@ -2249,18 +2260,63 @@ H5O_get_info(const H5O_loc_t *loc, H5O_info_t *oinfo, unsigned fields) } /* end else */ } /* end if */ - /* Get the information for the object header, if requested */ - if(fields & H5O_INFO_HDR) - if(H5O__get_hdr_info_real(oh, &oinfo->hdr) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object header info") - /* Retrieve # of attributes */ if(fields & H5O_INFO_NUM_ATTRS) if(H5O__attr_count_real(loc->file, oh, &oinfo->num_attrs) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve attribute count") +done: + if(oh && H5O_unprotect(loc, oh, H5AC__NO_FLAGS_SET) < 0) + HDONE_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, FAIL, "unable to release object header") + + FUNC_LEAVE_NOAPI_TAG(ret_value) +} /* end H5O_get_info() */ + + +/*------------------------------------------------------------------------- + * Function: H5O_get_native_info + * + * Purpose: Retrieve the native file-format information for an object + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Quincey Koziol + * November 21 2006 + * + *------------------------------------------------------------------------- + */ +herr_t +H5O_get_native_info(const H5O_loc_t *loc, H5O_native_info_t *oinfo, unsigned fields) +{ + const H5O_obj_class_t *obj_class; /* Class of object for header */ + H5O_t *oh = NULL; /* Object header */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI_TAG(loc->addr, FAIL) + + /* Check args */ + HDassert(loc); + HDassert(oinfo); + + /* Get the object header */ + if(NULL == (oh = H5O_protect(loc, H5AC__READ_ONLY_FLAG, FALSE))) + HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, FAIL, "unable to load object header") + + /* Get class for object */ + if(NULL == (obj_class = H5O__obj_class_real(oh))) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to determine object class") + + /* Reset the object info structure */ + HDmemset(oinfo, 0, sizeof(*oinfo)); + + /* Get the information for the object header, if requested */ + if(fields & H5O_NATIVE_INFO_HDR) + if(H5O__get_hdr_info_real(oh, &oinfo->hdr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object header info") + /* Get B-tree & heap metadata storage size, if requested */ - if(fields & H5O_INFO_META_SIZE) { + if(fields & H5O_NATIVE_INFO_META_SIZE) { /* Check for 'bh_info' callback for this type of object */ if(obj_class->bh_info) /* Call the object's class 'bh_info' routine */ @@ -2268,10 +2324,8 @@ H5O_get_info(const H5O_loc_t *loc, H5O_info_t *oinfo, unsigned fields) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object's btree & heap info") /* Get B-tree & heap info for any attributes */ - if(!(fields & H5O_INFO_NUM_ATTRS) || oinfo->num_attrs > 0) { - if(H5O__attr_bh_info(loc->file, oh, &oinfo->meta_size.attr) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve attribute btree & heap info") - } /* end if */ + if(H5O__attr_bh_info(loc->file, oh, &oinfo->meta_size.attr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve attribute btree & heap info") } /* end if */ done: @@ -2279,7 +2333,7 @@ done: HDONE_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, FAIL, "unable to release object header") FUNC_LEAVE_NOAPI_TAG(ret_value) -} /* end H5O_get_info() */ +} /* end H5O_get_native_info() */ /*------------------------------------------------------------------------- @@ -2593,7 +2647,7 @@ H5O__free_visit_visited(void *item, void H5_ATTR_UNUSED *key, void H5_ATTR_UNUSE *------------------------------------------------------------------------- */ static herr_t -H5O__visit_cb(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info_t *linfo, +H5O__visit_cb(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info2_t *linfo, void *_udata) { H5O_iter_visit_ud_t *udata = (H5O_iter_visit_ud_t *)_udata; /* User data for callback */ @@ -2631,7 +2685,7 @@ H5O__visit_cb(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info_t *li /* Check if we've seen the object the link references before */ if(NULL == H5SL_search(udata->visited, &obj_pos)) { - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ /* Get the object's info */ if(H5O_get_info(&obj_oloc, &oinfo, udata->fields) < 0) @@ -2707,14 +2761,14 @@ done: */ herr_t H5O__visit(H5G_loc_t *loc, const char *obj_name, H5_index_t idx_type, - H5_iter_order_t order, H5O_iterate_t op, void *op_data, unsigned fields) + H5_iter_order_t order, H5O_iterate2_t op, void *op_data, unsigned fields) { H5O_iter_visit_ud_t udata; /* User data for callback */ H5G_loc_t obj_loc; /* Location used to open object */ H5G_name_t obj_path; /* Opened object group hier. path */ H5O_loc_t obj_oloc; /* Opened object object location */ hbool_t loc_found = FALSE; /* Entry at 'name' found */ - H5O_info_t oinfo; /* Object info struct */ + H5O_info2_t oinfo; /* Object info struct */ void *obj = NULL; /* Object */ H5I_type_t opened_type; /* ID type of object */ hid_t obj_id = H5I_INVALID_HID; /* ID of object */ @@ -2790,7 +2844,10 @@ H5O__visit(H5G_loc_t *loc, const char *obj_name, H5_index_t idx_type, /* Construct unique "position" for this object */ obj_pos->fileno = oinfo.fileno; - obj_pos->addr = oinfo.addr; + + /* De-serialize object token into an object address */ + if(H5VL_native_token_to_addr(loc->oloc->file, H5I_FILE, oinfo.token, &(obj_pos->addr)) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") /* Add to list of visited objects */ if(H5SL_insert(udata.visited, obj_pos, obj_pos) < 0) @@ -3027,3 +3084,25 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O__free() */ +/*------------------------------------------------------------------------- + * Function: H5O__reset_info2 + * + * Purpose: Resets/initializes an H5O_info2_t struct. + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +static herr_t +H5O__reset_info2(H5O_info2_t *oinfo) +{ + FUNC_ENTER_STATIC_NOERR; + + /* Reset the passed-in info struct */ + HDmemset(oinfo, 0, sizeof(H5O_info2_t)); + oinfo->type = H5O_TYPE_UNKNOWN; + oinfo->token = H5O_TOKEN_UNDEF; + + FUNC_LEAVE_NOAPI(SUCCEED); +} /* end H5O__reset_info2() */ + diff --git a/src/H5Omessage.c b/src/H5Omessage.c index 18f3706..d66ea69 100644 --- a/src/H5Omessage.c +++ b/src/H5Omessage.c @@ -1686,17 +1686,14 @@ done: *------------------------------------------------------------------------- */ herr_t -H5O_msg_reset_share(unsigned type_id, void *mesg) +H5O_msg_reset_share(unsigned H5_ATTR_NDEBUG_UNUSED type_id, void *mesg) { - const H5O_msg_class_t *type; /* Actual H5O class type for the ID */ - FUNC_ENTER_NOAPI_NOINIT_NOERR /* Check args */ HDassert(type_id < NELMTS(H5O_msg_class_g)); - type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */ - HDassert(type); - HDassert(type->share_flags & H5O_SHARE_IS_SHARABLE); + HDassert(H5O_msg_class_g[type_id]); /* map the type ID to the actual type object */ + HDassert(H5O_msg_class_g[type_id]->share_flags & H5O_SHARE_IS_SHARABLE); HDassert(mesg); /* Reset the shared component in the message to zero. */ diff --git a/src/H5Opkg.h b/src/H5Opkg.h index c7167c7..fb08f7d 100644 --- a/src/H5Opkg.h +++ b/src/H5Opkg.h @@ -557,7 +557,7 @@ H5_DLLVAR const H5O_obj_class_t H5O_OBJ_DATATYPE[1]; H5_DLL const H5O_obj_class_t *H5O__obj_class(const H5O_loc_t *loc); H5_DLL int H5O__link_oh(H5F_t *f, int adjust, H5O_t *oh, hbool_t *deleted); H5_DLL herr_t H5O__visit(H5G_loc_t *loc, const char *obj_name, H5_index_t idx_type, - H5_iter_order_t order, H5O_iterate_t op, void *op_data, unsigned fields); + H5_iter_order_t order, H5O_iterate2_t op, void *op_data, unsigned fields); H5_DLL herr_t H5O__inc_rc(H5O_t *oh); H5_DLL herr_t H5O__dec_rc(H5O_t *oh); H5_DLL herr_t H5O__free(H5O_t *oh); diff --git a/src/H5Oprivate.h b/src/H5Oprivate.h index 5965fc6..52a72b2 100644 --- a/src/H5Oprivate.h +++ b/src/H5Oprivate.h @@ -907,7 +907,8 @@ H5_DLL herr_t H5O_bogus_oh(H5F_t *f, H5O_t *oh, unsigned mesg_id, unsigned mesg_ #endif /* H5O_ENABLE_BOGUS */ H5_DLL herr_t H5O_delete(H5F_t *f, haddr_t addr); H5_DLL herr_t H5O_get_hdr_info(const H5O_loc_t *oloc, H5O_hdr_info_t *hdr); -H5_DLL herr_t H5O_get_info(const H5O_loc_t *oloc, H5O_info_t *oinfo, unsigned fields); +H5_DLL herr_t H5O_get_info(const H5O_loc_t *oloc, H5O_info2_t *oinfo, unsigned fields); +H5_DLL herr_t H5O_get_native_info(const H5O_loc_t *oloc, H5O_native_info_t *oinfo, unsigned fields); H5_DLL herr_t H5O_obj_type(const H5O_loc_t *loc, H5O_type_t *obj_type); H5_DLL herr_t H5O_get_create_plist(const H5O_loc_t *loc, struct H5P_genplist_t *oc_plist); H5_DLL void *H5O_open_name(const H5G_loc_t *loc, const char *name, H5I_type_t *opened_type/*out*/); diff --git a/src/H5Opublic.h b/src/H5Opublic.h index cda446b..d0f8ab3 100644 --- a/src/H5Opublic.h +++ b/src/H5Opublic.h @@ -80,9 +80,19 @@ #define H5O_INFO_BASIC 0x0001u /* Fill in the fileno, addr, type, and rc fields */ #define H5O_INFO_TIME 0x0002u /* Fill in the atime, mtime, ctime, and btime fields */ #define H5O_INFO_NUM_ATTRS 0x0004u /* Fill in the num_attrs field */ -#define H5O_INFO_HDR 0x0008u /* Fill in the hdr field */ -#define H5O_INFO_META_SIZE 0x0010u /* Fill in the meta_size field */ -#define H5O_INFO_ALL (H5O_INFO_BASIC | H5O_INFO_TIME | H5O_INFO_NUM_ATTRS | H5O_INFO_HDR | H5O_INFO_META_SIZE) +#define H5O_INFO_ALL (H5O_INFO_BASIC | H5O_INFO_TIME | H5O_INFO_NUM_ATTRS) + +/* Flags for H5Oget_native_info. + * Theses flags determine which fields will be filled in in the H5O_native_info_t + * struct. + */ +#define H5O_NATIVE_INFO_HDR 0x0008u /* Fill in the hdr field */ +#define H5O_NATIVE_INFO_META_SIZE 0x0010u /* Fill in the meta_size field */ +#define H5O_NATIVE_INFO_ALL (H5O_NATIVE_INFO_HDR | H5O_NATIVE_INFO_META_SIZE) + +/* Convenience macro to check if the token is the 'undefined' token value */ +#define H5O_IS_TOKEN_UNDEF(token) (!HDmemcmp(&(token), &(H5O_TOKEN_UNDEF), sizeof(H5O_token_t))) + /*******************/ /* Public Typedefs */ @@ -116,30 +126,36 @@ typedef struct H5O_hdr_info_t { } mesg; } H5O_hdr_info_t; -/* Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) */ -typedef struct H5O_info_t { - unsigned long fileno; /* File number that object is located in */ - haddr_t addr; /* Object address in file */ - H5O_type_t type; /* Basic object type (group, dataset, etc.) */ - unsigned rc; /* Reference count of object */ - time_t atime; /* Access time */ - time_t mtime; /* Modification time */ - time_t ctime; /* Change time */ - time_t btime; /* Birth time */ - hsize_t num_attrs; /* # of attributes attached to object */ +/* Data model information struct for objects */ +/* (For H5Oget_info / H5Oget_info_by_name / H5Oget_info_by_idx version 3) */ +typedef struct H5O_info2_t { + unsigned long fileno; /* File number that object is located in */ + H5O_token_t token; /* Token representing the object */ + H5O_type_t type; /* Basic object type (group, dataset, etc.) */ + unsigned rc; /* Reference count of object */ + time_t atime; /* Access time */ + time_t mtime; /* Modification time */ + time_t ctime; /* Change time */ + time_t btime; /* Birth time */ + hsize_t num_attrs; /* # of attributes attached to object */ +} H5O_info2_t; + +/* Native file format information struct for objects */ +/* (For H5Oget_native_info / H5Oget_native_info_by_name / H5Oget_native_info_by_idx) */ +typedef struct H5O_native_info_t { H5O_hdr_info_t hdr; /* Object header information */ /* Extra metadata storage for obj & attributes */ struct { H5_ih_info_t obj; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */ H5_ih_info_t attr; /* v2 B-tree & heap for attributes */ } meta_size; -} H5O_info_t; +} H5O_native_info_t; /* Typedef for message creation indexes */ typedef uint32_t H5O_msg_crt_idx_t; -/* Prototype for H5Ovisit/H5Ovisit_by_name() operator */ -typedef herr_t (*H5O_iterate_t)(hid_t obj, const char *name, const H5O_info_t *info, +/* Prototype for H5Ovisit/H5Ovisit_by_name() operator (version 3) */ +typedef herr_t (*H5O_iterate2_t)(hid_t obj, const char *name, const H5O_info2_t *info, void *op_data); typedef enum H5O_mcdt_search_ret_t { @@ -165,15 +181,21 @@ extern "C" { #endif H5_DLL hid_t H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id); -H5_DLL hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr); +H5_DLL hid_t H5Oopen_by_token(hid_t loc_id, H5O_token_t token); H5_DLL hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); H5_DLL htri_t H5Oexists_by_name(hid_t loc_id, const char *name, hid_t lapl_id); -H5_DLL herr_t H5Oget_info2(hid_t loc_id, H5O_info_t *oinfo, unsigned fields); -H5_DLL herr_t H5Oget_info_by_name2(hid_t loc_id, const char *name, H5O_info_t *oinfo, +H5_DLL herr_t H5Oget_info3(hid_t loc_id, H5O_info2_t *oinfo, unsigned fields); +H5_DLL herr_t H5Oget_info_by_name3(hid_t loc_id, const char *name, H5O_info2_t *oinfo, unsigned fields, hid_t lapl_id); -H5_DLL herr_t H5Oget_info_by_idx2(hid_t loc_id, const char *group_name, - H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, +H5_DLL herr_t H5Oget_info_by_idx3(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info2_t *oinfo, + unsigned fields, hid_t lapl_id); +H5_DLL herr_t H5Oget_native_info(hid_t loc_id, H5O_native_info_t *oinfo, unsigned fields); +H5_DLL herr_t H5Oget_native_info_by_name(hid_t loc_id, const char *name, H5O_native_info_t *oinfo, + unsigned fields, hid_t lapl_id); +H5_DLL herr_t H5Oget_native_info_by_idx(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_native_info_t *oinfo, unsigned fields, hid_t lapl_id); H5_DLL herr_t H5Olink(hid_t obj_id, hid_t new_loc_id, const char *new_name, hid_t lcpl_id, hid_t lapl_id); @@ -187,10 +209,10 @@ H5_DLL herr_t H5Oset_comment_by_name(hid_t loc_id, const char *name, H5_DLL ssize_t H5Oget_comment(hid_t obj_id, char *comment, size_t bufsize); H5_DLL ssize_t H5Oget_comment_by_name(hid_t loc_id, const char *name, char *comment, size_t bufsize, hid_t lapl_id); -H5_DLL herr_t H5Ovisit2(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, - H5O_iterate_t op, void *op_data, unsigned fields); -H5_DLL herr_t H5Ovisit_by_name2(hid_t loc_id, const char *obj_name, - H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, +H5_DLL herr_t H5Ovisit3(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, + H5O_iterate2_t op, void *op_data, unsigned fields); +H5_DLL herr_t H5Ovisit_by_name3(hid_t loc_id, const char *obj_name, + H5_index_t idx_type, H5_iter_order_t order, H5O_iterate2_t op, void *op_data, unsigned fields, hid_t lapl_id); H5_DLL herr_t H5Oclose(hid_t object_id); H5_DLL herr_t H5Oflush(hid_t obj_id); @@ -198,6 +220,14 @@ H5_DLL herr_t H5Orefresh(hid_t oid); H5_DLL herr_t H5Odisable_mdc_flushes(hid_t object_id); H5_DLL herr_t H5Oenable_mdc_flushes(hid_t object_id); H5_DLL herr_t H5Oare_mdc_flushes_disabled(hid_t object_id, hbool_t *are_disabled); +H5_DLL herr_t H5Otoken_cmp(hid_t loc_id, const H5O_token_t *token1, const H5O_token_t *token2, + int *cmp_value); +H5_DLL herr_t H5Otoken_to_str(hid_t loc_id, const H5O_token_t *token, char **token_str); +H5_DLL herr_t H5Otoken_from_str(hid_t loc_id, const char *token_str, H5O_token_t *token); + +/* The canonical 'undefined' token value */ +#define H5O_TOKEN_UNDEF (H5OPEN H5O_TOKEN_UNDEF_g) +H5_DLLVAR const H5O_token_t H5O_TOKEN_UNDEF_g; /* Symbols defined for compatibility with previous versions of the HDF5 API. * @@ -207,6 +237,12 @@ H5_DLL herr_t H5Oare_mdc_flushes_disabled(hid_t object_id, hbool_t *are_disabled /* Macros */ +/* Deprecated flags for earlier versions of H5Oget_info* */ +#define H5O_INFO_HDR 0x0008u /* Fill in the hdr field */ +#define H5O_INFO_META_SIZE 0x0010u /* Fill in the meta_size field */ +#undef H5O_INFO_ALL +#define H5O_INFO_ALL (H5O_INFO_BASIC | H5O_INFO_TIME | H5O_INFO_NUM_ATTRS | H5O_INFO_HDR | H5O_INFO_META_SIZE) + /* Typedefs */ /* A struct that's part of the H5G_stat_t structure (deprecated) */ @@ -217,19 +253,56 @@ typedef struct H5O_stat_t { unsigned nchunks; /* Number of object header chunks */ } H5O_stat_t; +/* Information struct for object */ +/* (For H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx versions 1 & 2) */ +typedef struct H5O_info1_t { + unsigned long fileno; /* File number that object is located in */ + haddr_t addr; /* Object address in file */ + H5O_type_t type; /* Basic object type (group, dataset, etc.) */ + unsigned rc; /* Reference count of object */ + time_t atime; /* Access time */ + time_t mtime; /* Modification time */ + time_t ctime; /* Change time */ + time_t btime; /* Birth time */ + hsize_t num_attrs; /* # of attributes attached to object */ + H5O_hdr_info_t hdr; /* Object header information */ + /* Extra metadata storage for obj & attributes */ + struct { + H5_ih_info_t obj; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */ + H5_ih_info_t attr; /* v2 B-tree & heap for attributes */ + } meta_size; +} H5O_info1_t; + +/* Prototype for H5Ovisit/H5Ovisit_by_name() operator (versions 1 & 2) */ +typedef herr_t (*H5O_iterate1_t)(hid_t obj, const char *name, const H5O_info1_t *info, + void *op_data); + + /* Function prototypes */ -H5_DLL herr_t H5Oget_info1(hid_t loc_id, H5O_info_t *oinfo); -H5_DLL herr_t H5Oget_info_by_name1(hid_t loc_id, const char *name, H5O_info_t *oinfo, +H5_DLL hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr); +H5_DLL herr_t H5Oget_info1(hid_t loc_id, H5O_info1_t *oinfo); +H5_DLL herr_t H5Oget_info_by_name1(hid_t loc_id, const char *name, H5O_info1_t *oinfo, hid_t lapl_id); H5_DLL herr_t H5Oget_info_by_idx1(hid_t loc_id, const char *group_name, - H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, + H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info1_t *oinfo, hid_t lapl_id); - +H5_DLL herr_t H5Oget_info2(hid_t loc_id, H5O_info1_t *oinfo, unsigned fields); +H5_DLL herr_t H5Oget_info_by_name2(hid_t loc_id, const char *name, H5O_info1_t *oinfo, + unsigned fields, hid_t lapl_id); +H5_DLL herr_t H5Oget_info_by_idx2(hid_t loc_id, const char *group_name, + H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info1_t *oinfo, + unsigned fields, hid_t lapl_id); H5_DLL herr_t H5Ovisit1(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, - H5O_iterate_t op, void *op_data); + H5O_iterate1_t op, void *op_data); H5_DLL herr_t H5Ovisit_by_name1(hid_t loc_id, const char *obj_name, - H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, + H5_index_t idx_type, H5_iter_order_t order, H5O_iterate1_t op, void *op_data, hid_t lapl_id); +H5_DLL herr_t H5Ovisit2(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, + H5O_iterate1_t op, void *op_data, unsigned fields); +H5_DLL herr_t H5Ovisit_by_name2(hid_t loc_id, const char *obj_name, + H5_index_t idx_type, H5_iter_order_t order, H5O_iterate1_t op, + void *op_data, unsigned fields, hid_t lapl_id); + #endif /* H5_NO_DEPRECATED_SYMBOLS */ #ifdef __cplusplus diff --git a/src/H5Oshared.c b/src/H5Oshared.c index 67ca76f..b49e501 100644 --- a/src/H5Oshared.c +++ b/src/H5Oshared.c @@ -589,9 +589,9 @@ done: *------------------------------------------------------------------------- */ herr_t -H5O__shared_copy_file(H5F_t *file_src, H5F_t *file_dst, +H5O__shared_copy_file(H5F_t H5_ATTR_NDEBUG_UNUSED *file_src, H5F_t *file_dst, const H5O_msg_class_t *mesg_type, const void *_native_src, void *_native_dst, - hbool_t H5_ATTR_UNUSED *recompute_size, unsigned *mesg_flags, H5O_copy_t *cpy_info, + hbool_t H5_ATTR_UNUSED *recompute_size, unsigned *mesg_flags, H5O_copy_t H5_ATTR_NDEBUG_UNUSED *cpy_info, void H5_ATTR_UNUSED *udata) { const H5O_shared_t *shared_src = (const H5O_shared_t *)_native_src; /* Alias to shared info in native source */ diff --git a/src/H5Oshared.h b/src/H5Oshared.h index 8040a6a..e4ad980 100644 --- a/src/H5Oshared.h +++ b/src/H5Oshared.h @@ -381,7 +381,7 @@ done: *------------------------------------------------------------------------- */ static H5_INLINE herr_t -H5O_SHARED_POST_COPY_FILE(const H5O_loc_t *oloc_src, const void *mesg_src, +H5O_SHARED_POST_COPY_FILE(const H5O_loc_t H5_ATTR_NDEBUG_UNUSED *oloc_src, const void *mesg_src, H5O_loc_t *oloc_dst, void *mesg_dst, unsigned *mesg_flags, H5O_copy_t *cpy_info) { diff --git a/src/H5Pfapl.c b/src/H5Pfapl.c index 22252d3..3668229 100644 --- a/src/H5Pfapl.c +++ b/src/H5Pfapl.c @@ -5753,10 +5753,10 @@ H5P__facc_vol_cmp(const void *_info1, const void *_info2, size_t H5_ATTR_UNUSED { const H5VL_connector_prop_t *info1 = (const H5VL_connector_prop_t *)_info1; /* Create local aliases for values */ const H5VL_connector_prop_t *info2 = (const H5VL_connector_prop_t *)_info2; - H5VL_class_t *cls1, *cls2; /* connector class for each property */ - int cmp_value = 0; /* Value from comparison */ - herr_t status; /* Status from info comparison */ - int ret_value = 0; /* Return value */ + H5VL_class_t *cls1, *cls2; /* connector class for each property */ + int cmp_value = 0; /* Value from comparison */ + herr_t H5_ATTR_NDEBUG_UNUSED status; /* Status from info comparison */ + int ret_value = 0; /* Return value */ FUNC_ENTER_STATIC_NOERR diff --git a/src/H5Pint.c b/src/H5Pint.c index 2911eef..0810427 100644 --- a/src/H5Pint.c +++ b/src/H5Pint.c @@ -2780,8 +2780,8 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5P__poke_plist_cb(H5P_genplist_t *plist, const char *name, H5P_genprop_t *prop, - void *_udata) +H5P__poke_plist_cb(H5P_genplist_t H5_ATTR_NDEBUG_UNUSED *plist, const char H5_ATTR_NDEBUG_UNUSED *name, + H5P_genprop_t *prop, void *_udata) { H5P_prop_set_ud_t *udata = (H5P_prop_set_ud_t *)_udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ @@ -2827,7 +2827,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5P__poke_pclass_cb(H5P_genplist_t *plist, const char *name, H5P_genprop_t *prop, +H5P__poke_pclass_cb(H5P_genplist_t *plist, const char H5_ATTR_NDEBUG_UNUSED *name, H5P_genprop_t *prop, void *_udata) { H5P_prop_set_ud_t *udata = (H5P_prop_set_ud_t *)_udata; /* User data for callback */ @@ -4260,10 +4260,9 @@ property list class. REVISION LOG --------------------------------------------------------------------------*/ static int -H5P__iterate_pclass_cb(void *_item, void *_key, void *_udata) +H5P__iterate_pclass_cb(void *_item, void H5_ATTR_NDEBUG_UNUSED *_key, void *_udata) { H5P_genprop_t *item = (H5P_genprop_t *)_item; /* Pointer to the property */ - char *key = (char *)_key; /* Pointer to the property's name */ H5P_iter_pclass_ud_t *udata = (H5P_iter_pclass_ud_t *)_udata; /* Pointer to user data */ int ret_value = 0; /* Return value */ @@ -4271,7 +4270,7 @@ H5P__iterate_pclass_cb(void *_item, void *_key, void *_udata) /* Sanity check */ HDassert(item); - HDassert(key); + HDassert((char *)_key); /* Check if we've found the correctly indexed property */ if(*udata->curr_idx_ptr >= udata->prev_idx) { @@ -4397,8 +4396,8 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5P__peek_cb(H5P_genplist_t *plist, const char *name, H5P_genprop_t *prop, - void *_udata) +H5P__peek_cb(H5P_genplist_t H5_ATTR_NDEBUG_UNUSED *plist, const char H5_ATTR_NDEBUG_UNUSED *name, + H5P_genprop_t *prop, void *_udata) { H5P_prop_get_ud_t *udata = (H5P_prop_get_ud_t *)_udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5Plapl.c b/src/H5Plapl.c index d899fa9..6e582fb 100644 --- a/src/H5Plapl.c +++ b/src/H5Plapl.c @@ -567,7 +567,7 @@ H5P__lacc_elink_fapl_cmp(const void *value1, const void *value2, size_t H5_ATTR_ if(obj1 == NULL && obj2 != NULL) HGOTO_DONE(1); if(obj1 != NULL && obj2 == NULL) HGOTO_DONE(-1); if(obj1 && obj2) { - herr_t status; + herr_t H5_ATTR_NDEBUG_UNUSED status; status = H5P__cmp_plist(obj1, obj2, &ret_value); HDassert(status >= 0); diff --git a/src/H5Pmapl.c b/src/H5Pmapl.c index fe5be0f..3a3f619 100644 --- a/src/H5Pmapl.c +++ b/src/H5Pmapl.c @@ -137,6 +137,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__macc_reg_prop() */ +#ifdef H5_HAVE_MAP_API /*------------------------------------------------------------------------- * Function: H5Pset_map_iterate_hints @@ -214,4 +215,4 @@ H5Pget_map_iterate_hints(hid_t mapl_id, size_t *key_prefetch_size, size_t *key_a done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_map_iterate_hints() */ - +#endif @@ -66,22 +66,22 @@ /*------------------------------------------------------------------------- * Function: H5Rcreate_object * - * Purpose: Creates an object reference. The LOC_ID and NAME are used to locate - * the object pointed to. + * Purpose: Creates an object reference. The LOC_ID and NAME are used + * to locate the object pointed to. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success / Negative on failure * *------------------------------------------------------------------------- */ herr_t H5Rcreate_object(hid_t loc_id, const char *name, hid_t oapl_id, H5R_ref_t *ref_ptr) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5I_type_t obj_type; /* Object type of loc_id */ hid_t file_id = H5I_INVALID_HID;/* File ID */ - H5VL_object_t *vol_obj_file = NULL; /* Object token of file_id */ + H5VL_object_t *vol_obj_file = NULL; /* Object of file_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ H5VL_file_cont_info_t cont_info = {H5VL_CONTAINER_INFO_VERSION, 0, 0, 0}; herr_t ret_value = SUCCEED; /* Return value */ @@ -135,11 +135,11 @@ H5Rcreate_object(hid_t loc_id, const char *name, hid_t oapl_id, H5R_ref_t *ref_p /* Create the reference (do not pass filename, since file_id is attached) */ HDmemset(ref_ptr, 0, H5R_REF_BUF_SIZE); - if(H5R__create_object((const H5VL_token_t *)&obj_token, cont_info.token_size, (H5R_ref_priv_t *)ref_ptr) < 0) + if(H5R__create_object((const H5O_token_t *)&obj_token, cont_info.token_size, (H5R_ref_priv_t *)ref_ptr) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCREATE, FAIL, "unable to create object reference") /* Attach loc_id to reference and hold reference to it */ - if(H5R__set_loc_id((H5R_ref_priv_t *)ref_ptr, file_id, TRUE) < 0) + if(H5R__set_loc_id((H5R_ref_priv_t *)ref_ptr, file_id, TRUE, TRUE) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTSET, FAIL, "unable to attach location id to reference") done: @@ -152,11 +152,11 @@ done: /*------------------------------------------------------------------------- * Function: H5Rcreate_region * - * Purpose: Creates a region reference. The LOC_ID and NAME are used to locate - * the object pointed to and the SPACE_ID is used to choose the region pointed - * to. + * Purpose: Creates a region reference. The LOC_ID and NAME are used to + * locate the object pointed to and the SPACE_ID is used to + * choose the region pointed to. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success / Negative on failure * *------------------------------------------------------------------------- */ @@ -164,12 +164,12 @@ herr_t H5Rcreate_region(hid_t loc_id, const char *name, hid_t space_id, hid_t oapl_id, H5R_ref_t *ref_ptr) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5I_type_t obj_type; /* Object type of loc_id */ hid_t file_id = H5I_INVALID_HID;/* File ID */ - H5VL_object_t *vol_obj_file = NULL; /* Object token of file_id */ + H5VL_object_t *vol_obj_file = NULL; /* Object of file_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ H5VL_file_cont_info_t cont_info = {H5VL_CONTAINER_INFO_VERSION, 0, 0, 0}; struct H5S_t *space = NULL; /* Pointer to dataspace containing region */ herr_t ret_value = SUCCEED; /* Return value */ @@ -228,11 +228,11 @@ H5Rcreate_region(hid_t loc_id, const char *name, hid_t space_id, /* Create the reference (do not pass filename, since file_id is attached) */ HDmemset(ref_ptr, 0, H5R_REF_BUF_SIZE); - if(H5R__create_region((const H5VL_token_t *)&obj_token, cont_info.token_size, space, (H5R_ref_priv_t *)ref_ptr) < 0) + if(H5R__create_region((const H5O_token_t *)&obj_token, cont_info.token_size, space, (H5R_ref_priv_t *)ref_ptr) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCREATE, FAIL, "unable to create region reference") /* Attach loc_id to reference and hold reference to it */ - if(H5R__set_loc_id((H5R_ref_priv_t *)ref_ptr, file_id, TRUE) < 0) + if(H5R__set_loc_id((H5R_ref_priv_t *)ref_ptr, file_id, TRUE, TRUE) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTSET, FAIL, "unable to attach location id to reference") done: @@ -245,10 +245,10 @@ done: /*------------------------------------------------------------------------- * Function: H5Rcreate_attr * - * Purpose: Creates an attribute reference. The LOC_ID, NAME and ATTR_NAME are - * used to locate the attribute pointed to. + * Purpose: Creates an attribute reference. The LOC_ID, NAME and + * ATTR_NAME are used to locate the attribute pointed to. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success / Negative on failure * *------------------------------------------------------------------------- */ @@ -256,12 +256,12 @@ herr_t H5Rcreate_attr(hid_t loc_id, const char *name, const char *attr_name, hid_t oapl_id, H5R_ref_t *ref_ptr) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5I_type_t obj_type; /* Object type of loc_id */ hid_t file_id = H5I_INVALID_HID;/* File ID */ - H5VL_object_t *vol_obj_file = NULL; /* Object token of file_id */ + H5VL_object_t *vol_obj_file = NULL; /* Object of file_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ H5VL_file_cont_info_t cont_info = {H5VL_CONTAINER_INFO_VERSION, 0, 0, 0}; herr_t ret_value = SUCCEED; /* Return value */ @@ -317,11 +317,11 @@ H5Rcreate_attr(hid_t loc_id, const char *name, const char *attr_name, /* Create the reference (do not pass filename, since file_id is attached) */ HDmemset(ref_ptr, 0, H5R_REF_BUF_SIZE); - if(H5R__create_attr((const H5VL_token_t *)&obj_token, cont_info.token_size, attr_name, (H5R_ref_priv_t *)ref_ptr) < 0) + if(H5R__create_attr((const H5O_token_t *)&obj_token, cont_info.token_size, attr_name, (H5R_ref_priv_t *)ref_ptr) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCREATE, FAIL, "unable to create attribute reference") /* Attach loc_id to reference and hold reference to it */ - if(H5R__set_loc_id((H5R_ref_priv_t *)ref_ptr, file_id, TRUE) < 0) + if(H5R__set_loc_id((H5R_ref_priv_t *)ref_ptr, file_id, TRUE, TRUE) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTSET, FAIL, "unable to attach location id to reference") done: @@ -334,9 +334,10 @@ done: /*------------------------------------------------------------------------- * Function: H5Rdestroy * - * Purpose: Destroy reference and free resources allocated during H5Rcreate. + * Purpose: Destroy reference and free resources allocated during + * H5Rcreate. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success / Negative on failure * *------------------------------------------------------------------------- */ @@ -367,9 +368,10 @@ done: /*------------------------------------------------------------------------- * Function: H5Rget_type * - * Purpose: Given a reference to some object, return the type of that reference. + * Purpose: Given a reference to some object, return the type of that + * reference. * - * Return: Reference type/H5R_BADTYPE on failure + * Return: Reference type / H5R_BADTYPE on failure * *------------------------------------------------------------------------- */ @@ -398,9 +400,9 @@ done: /*------------------------------------------------------------------------- * Function: H5Requal * - * Purpose: Compare two references + * Purpose: Compare two references * - * Return: TRUE if equal, FALSE if unequal, FAIL if error + * Return: TRUE if equal, FALSE if unequal, FAIL if error * *------------------------------------------------------------------------- */ @@ -428,9 +430,9 @@ done: /*------------------------------------------------------------------------- * Function: H5Rcopy * - * Purpose: Copy a reference + * Purpose: Copy a reference * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success / Negative on failure * *------------------------------------------------------------------------- */ @@ -458,20 +460,20 @@ done: /*------------------------------------------------------------------------- * Function: H5Ropen_object * - * Purpose: Given a reference to some object, open that object and return an - * ID for that object. + * Purpose: Given a reference to some object, open that object and + * return an ID for that object. * - * Return: Valid ID on success/Negative on failure + * Return: Valid ID on success / H5I_INVALID_HID on failure * *------------------------------------------------------------------------- */ hid_t -H5Ropen_object(const H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id) +H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id) { hid_t loc_id; /* Reference location ID */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ H5I_type_t opened_type; /* Opened object type */ void *opened_obj = NULL; /* Opened object */ hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -530,21 +532,21 @@ done: /*------------------------------------------------------------------------- * Function: H5Ropen_region * - * Purpose: Given a reference to some object, creates a copy of the dataset - * pointed to's dataspace and defines a selection in the copy which is the - * region pointed to. + * Purpose: Given a reference to some object, creates a copy of the dataset + * pointed to's dataspace and defines a selection in the copy + * which is the region pointed to. * - * Return: Valid ID on success/Negative on failure + * Return: Valid ID on success / H5I_INVALID_HID on failure * *------------------------------------------------------------------------- */ hid_t -H5Ropen_region(const H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id) +H5Ropen_region(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id) { hid_t loc_id; /* Reference location ID */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ H5I_type_t opened_type; /* Opened object type */ void *opened_obj = NULL; /* Opened object */ hid_t opened_obj_id = H5I_INVALID_HID; /* Opened object ID */ @@ -625,20 +627,20 @@ done: /*------------------------------------------------------------------------- * Function: H5Ropen_attr * - * Purpose: Given a reference to some attribute, open that attribute and - * return an ID for that attribute. + * Purpose: Given a reference to some attribute, open that attribute and + * return an ID for that attribute. * - * Return: Valid ID on success/Negative on failure + * Return: Valid ID on success / H5I_INVALID_HID on failure * *------------------------------------------------------------------------- */ hid_t -H5Ropen_attr(const H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t aapl_id) +H5Ropen_attr(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t aapl_id) { hid_t loc_id; /* Reference location ID */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ H5I_type_t opened_type; /* Opened object type */ void *opened_obj = NULL; /* Opened object */ hid_t opened_obj_id = H5I_INVALID_HID; /* Opened object ID */ @@ -720,20 +722,20 @@ done: /*------------------------------------------------------------------------- * Function: H5Rget_obj_type3 * - * Purpose: Given a reference to some object, this function returns the type - * of object pointed to. + * Purpose: Given a reference to some object, this function returns the + * type of object pointed to. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success / Negative on failure * *------------------------------------------------------------------------- */ herr_t -H5Rget_obj_type3(const H5R_ref_t *ref_ptr, hid_t rapl_id, H5O_type_t *obj_type) +H5Rget_obj_type3(H5R_ref_t *ref_ptr, hid_t rapl_id, H5O_type_t *obj_type) { hid_t loc_id; /* Reference location ID */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -780,10 +782,10 @@ done: /*------------------------------------------------------------------------- * Function: H5Rget_file_name * - * Purpose: Given a reference to some object, determine a file name of the - * object located into. + * Purpose: Given a reference to some object, determine a file name of the + * object located into. * - * Return: Non-negative length of the path on success/Negative on failure + * Return: Non-negative length of the path on success / -1 on failure * *------------------------------------------------------------------------- */ @@ -809,8 +811,9 @@ H5Rget_file_name(const H5R_ref_t *ref_ptr, char *buf, size_t size) * copy of the filename */ if((ret_value = H5R__get_file_name((const H5R_ref_priv_t *)ref_ptr, buf, size)) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, (-1), "unable to retrieve file name") - } else { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + } + else { + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ /* Retrieve VOL file object */ if(NULL == (vol_obj = H5VL_vol_object(loc_id))) @@ -828,21 +831,21 @@ done: /*------------------------------------------------------------------------- * Function: H5Rget_obj_name * - * Purpose: Given a reference to some object, determine a path to the object - * referenced in the file. + * Purpose: Given a reference to some object, determine a path to the + * object referenced in the file. * - * Return: Non-negative length of the path on success/Negative on failure + * Return: Non-negative length of the path on success / -1 on failure * *------------------------------------------------------------------------- */ ssize_t -H5Rget_obj_name(const H5R_ref_t *ref_ptr, hid_t rapl_id, char *buf, size_t size) +H5Rget_obj_name(H5R_ref_t *ref_ptr, hid_t rapl_id, char *buf, size_t size) { hid_t loc_id; /* Reference location ID */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ - ssize_t ret_value; /* Return value */ + H5O_token_t obj_token = {0}; /* Object token */ + ssize_t ret_value = 0; /* Return value */ FUNC_ENTER_API((-1)) H5TRACE4("Zs", "*Rri*sz", ref_ptr, rapl_id, buf, size); @@ -864,7 +867,7 @@ H5Rget_obj_name(const H5R_ref_t *ref_ptr, hid_t rapl_id, char *buf, size_t size) } /* Get object token */ - if((ret_value = H5R__get_obj_token((const H5R_ref_priv_t *)ref_ptr, &obj_token, NULL)) < 0) + if(H5R__get_obj_token((const H5R_ref_priv_t *)ref_ptr, &obj_token, NULL) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, (-1), "unable to get object token") /* Get the VOL object */ @@ -888,9 +891,9 @@ done: /*------------------------------------------------------------------------- * Function: H5Rget_attr_name * - * Purpose: Given a reference to some attribute, determine its name. + * Purpose: Given a reference to some attribute, determine its name. * - * Return: Non-negative length of the path on success/Negative on failure + * Return: Non-negative length of the path on success / -1 on failure * *------------------------------------------------------------------------- */ diff --git a/src/H5Rdeprec.c b/src/H5Rdeprec.c index 256c930..4e44683 100644 --- a/src/H5Rdeprec.c +++ b/src/H5Rdeprec.c @@ -87,20 +87,20 @@ /*------------------------------------------------------------------------- * Function: H5Rget_obj_type1 * - * Purpose: Retrieves the type of the object that a reference points to. + * Purpose: Retrieves the type of the object that a reference points to. * - * Return: Object type (as defined in H5Gpublic.h) on success - * H5G_UNKNOWN on failure + * Return: Success: Object type (as defined in H5Gpublic.h) + * Failure: H5G_UNKNOWN * *------------------------------------------------------------------------- */ H5G_obj_t H5Rget_obj_type1(hid_t id, H5R_type_t ref_type, const void *ref) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5I_type_t vol_obj_type = H5I_BADID;/* Object type of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ H5O_type_t obj_type; /* Object type */ const unsigned char *buf = (const unsigned char *)ref; /* Reference buffer */ H5G_obj_t ret_value; /* Return value */ @@ -146,20 +146,21 @@ done: /*------------------------------------------------------------------------- * Function: H5Rdereference1 * - * Purpose: Given a reference to some object, open that object and return an - * ID for that object. + * Purpose: Given a reference to some object, open that object and return + * an ID for that object. * - * Return: Valid ID on success/Negative on failure + * Return: Success: Valid ID + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ hid_t H5Rdereference1(hid_t obj_id, H5R_type_t ref_type, const void *ref) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5I_type_t vol_obj_type = H5I_BADID;/* Object type of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ H5I_type_t opened_type; /* Opened object type */ void *opened_obj = NULL; /* Opened object */ const unsigned char *buf = (const unsigned char *)ref; /* Reference buffer */ @@ -209,12 +210,12 @@ done: /*------------------------------------------------------------------------- * Function: H5Rcreate * - * Purpose: Creates a particular type of reference specified with REF_TYPE, - * in the space pointed to by REF. The LOC_ID and NAME are used to locate the - * object pointed to and the SPACE_ID is used to choose the region pointed to - * (for Dataset Region references). + * Purpose: Creates a particular type of reference specified with REF_TYPE, + * in the space pointed to by REF. The LOC_ID and NAME are used to + * locate the object pointed to and the SPACE_ID is used to choose + * the region pointed to (for Dataset Region references). * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success / negative on failure * *------------------------------------------------------------------------- */ @@ -222,10 +223,10 @@ herr_t H5Rcreate(void *ref, hid_t loc_id, const char *name, H5R_type_t ref_type, hid_t space_id) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5I_type_t vol_obj_type = H5I_BADID;/* Object type of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ H5VL_file_cont_info_t cont_info = {H5VL_CONTAINER_INFO_VERSION, 0, 0, 0}; hid_t file_id = H5I_INVALID_HID; /* File ID for region reference */ void *vol_obj_file = NULL; @@ -294,7 +295,7 @@ H5Rcreate(void *ref, hid_t loc_id, const char *name, H5R_type_t ref_type, if(ref_type == H5R_OBJECT1) { size_t buf_size = H5R_OBJ_REF_BUF_SIZE; - if((ret_value = H5R__encode_token_obj_compat((const H5VL_token_t *)&obj_token, cont_info.token_size, buf, &buf_size)) < 0) + if((ret_value = H5R__encode_token_obj_compat((const H5O_token_t *)&obj_token, cont_info.token_size, buf, &buf_size)) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTENCODE, FAIL, "unable to encode object reference") } /* end if */ else { @@ -313,7 +314,7 @@ H5Rcreate(void *ref, hid_t loc_id, const char *name, H5R_type_t ref_type, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid VOL object") /* Encode dataset region */ - if((ret_value = H5R__encode_token_region_compat(f, (const H5VL_token_t *)&obj_token, cont_info.token_size, space, buf, &buf_size)) < 0) + if((ret_value = H5R__encode_token_region_compat(f, (const H5O_token_t *)&obj_token, cont_info.token_size, space, buf, &buf_size)) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTENCODE, FAIL, "unable to encode region reference") } /* end else */ @@ -327,10 +328,10 @@ done: /*------------------------------------------------------------------------- * Function: H5Rget_obj_type2 * - * Purpose: Given a reference to some object, this function returns the type - * of object pointed to. + * Purpose: Given a reference to some object, this function returns the + * type of object pointed to. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success / negative on failure * *------------------------------------------------------------------------- */ @@ -338,10 +339,10 @@ herr_t H5Rget_obj_type2(hid_t id, H5R_type_t ref_type, const void *ref, H5O_type_t *obj_type) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5I_type_t vol_obj_type = H5I_BADID;/* Object type of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ const unsigned char *buf = (const unsigned char *)ref; /* Reference pointer */ herr_t ret_value = SUCCEED; /* Return value */ @@ -383,10 +384,11 @@ done: /*------------------------------------------------------------------------- * Function: H5Rdereference2 * - * Purpose: Given a reference to some object, open that object and return an - * ID for that object. + * Purpose: Given a reference to some object, open that object and return + * an ID for that object. * - * Return: Valid ID on success/Negative on failure + * Return: Success: Valid ID + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ @@ -394,10 +396,10 @@ hid_t H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type, const void *ref) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5I_type_t vol_obj_type = H5I_BADID;/* Object type of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ H5I_type_t opened_type; /* Opened object type */ void *opened_obj = NULL; /* Opened object */ const unsigned char *buf = (const unsigned char *)ref; /* Reference pointer */ @@ -451,18 +453,19 @@ done: /*------------------------------------------------------------------------- * Function: H5Rget_region * - * Purpose: Given a reference to some object, creates a copy of the dataset - * pointed to's dataspace and defines a selection in the copy which is the - * region pointed to. + * Purpose: Given a reference to some object, creates a copy of the dataset + * pointed to's dataspace and defines a selection in the copy + * which is the region pointed to. * - * Return: Valid ID on success/Negative on failure + * Return: Success: Valid ID + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ hid_t H5Rget_region(hid_t id, H5R_type_t ref_type, const void *ref) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5I_type_t vol_obj_type = H5I_BADID;/* Object type of loc_id */ void *vol_obj_file = NULL; /* VOL file */ H5VL_file_cont_info_t cont_info = {H5VL_CONTAINER_INFO_VERSION, 0, 0, 0}; @@ -537,10 +540,11 @@ done: /*------------------------------------------------------------------------- * Function: H5Rget_name * - * Purpose: Given a reference to some object, determine a path to the object - * referenced in the file. + * Purpose: Given a reference to some object, determine a path to the + * object referenced in the file. * - * Return: Non-negative length of the path on success/Negative on failure + * Return: Success: Non-negative length of the path + * Failure: -1 * *------------------------------------------------------------------------- */ @@ -548,10 +552,10 @@ ssize_t H5Rget_name(hid_t id, H5R_type_t ref_type, const void *ref, char *name, size_t size) { - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5I_type_t vol_obj_type = H5I_BADID;/* Object type of loc_id */ H5VL_loc_params_t loc_params; /* Location parameters */ - H5VL_token_t obj_token = {0}; /* Object token */ + H5O_token_t obj_token = {0}; /* Object token */ const unsigned char *buf = (const unsigned char *)ref; /* Reference pointer */ ssize_t ret_value = -1; /* Return value */ @@ -588,3 +592,4 @@ H5Rget_name(hid_t id, H5R_type_t ref_type, const void *ref, char *name, done: FUNC_LEAVE_API(ret_value) } /* end H5Rget_name() */ + diff --git a/src/H5Rint.c b/src/H5Rint.c index 46e4c0c..1df8a20 100644 --- a/src/H5Rint.c +++ b/src/H5Rint.c @@ -35,6 +35,8 @@ #include "H5Sprivate.h" /* Dataspaces */ #include "H5Tprivate.h" /* Datatypes */ +#include "H5VLnative_private.h" /* Native VOL connector */ + /****************/ /* Local Macros */ /****************/ @@ -93,9 +95,29 @@ HDfflush(stdout); \ } while (0) static const char * -H5R__print_token(const H5VL_token_t token) { +H5R__print_token(const H5O_token_t token) { static char string[64]; - HDsnprintf(string, 64, "%zu", *(haddr_t *)token); + + /* Print the raw token. */ + HDsnprintf(string, 64, "%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X", + (unsigned char)token.__data[15], + (unsigned char)token.__data[14], + (unsigned char)token.__data[13], + (unsigned char)token.__data[12], + (unsigned char)token.__data[11], + (unsigned char)token.__data[10], + (unsigned char)token.__data[9], + (unsigned char)token.__data[8], + (unsigned char)token.__data[7], + (unsigned char)token.__data[6], + (unsigned char)token.__data[5], + (unsigned char)token.__data[4], + (unsigned char)token.__data[3], + (unsigned char)token.__data[2], + (unsigned char)token.__data[1], + (unsigned char)token.__data[0] + ); + return string; } #else @@ -110,8 +132,8 @@ H5R__print_token(const H5VL_token_t token) { /* Local Prototypes */ /********************/ -static herr_t H5R__encode_obj_token(const H5VL_token_t *obj_token, size_t token_size, unsigned char *buf, size_t *nalloc); -static herr_t H5R__decode_obj_token(const unsigned char *buf, size_t *nbytes, H5VL_token_t *obj_token, uint8_t *token_size); +static herr_t H5R__encode_obj_token(const H5O_token_t *obj_token, size_t token_size, unsigned char *buf, size_t *nalloc); +static herr_t H5R__decode_obj_token(const unsigned char *buf, size_t *nbytes, H5O_token_t *obj_token, uint8_t *token_size); static herr_t H5R__encode_region(H5S_t *space, unsigned char *buf, size_t *nalloc); static herr_t H5R__decode_region(const unsigned char *buf, size_t *nbytes, H5S_t **space_ptr); static herr_t H5R__encode_string(const char *string, unsigned char *buf, size_t *nalloc); @@ -240,14 +262,14 @@ H5R_term_package(void) /*------------------------------------------------------------------------- * Function: H5R__create_object * - * Purpose: Creates an object reference. + * Purpose: Creates an object reference * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t -H5R__create_object(const H5VL_token_t *obj_token, size_t token_size, +H5R__create_object(const H5O_token_t *obj_token, size_t token_size, H5R_ref_priv_t *ref) { size_t encode_size; @@ -258,11 +280,11 @@ H5R__create_object(const H5VL_token_t *obj_token, size_t token_size, HDassert(ref); /* Create new reference */ - H5MM_memcpy(&ref->ref.obj.token, obj_token, token_size); - ref->ref.obj.filename = NULL; + ref->info.obj.filename = NULL; ref->loc_id = H5I_INVALID_HID; ref->type = (uint8_t)H5R_OBJECT2; - ref->token_size = (uint8_t)token_size; + if(H5R__set_obj_token(ref, obj_token, token_size) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTSET, FAIL, "unable to set object token") /* Cache encoding size (assume no external reference) */ if(H5R__encode(NULL, ref, NULL, &encode_size, 0) < 0) @@ -270,7 +292,7 @@ H5R__create_object(const H5VL_token_t *obj_token, size_t token_size, ref->encode_size = (uint32_t)encode_size; H5R_LOG_DEBUG("Created object reference, %d, filename=%s, obj_addr=%s, encode size=%u", - (int)sizeof(H5R_ref_priv_t), ref->ref.obj.filename, H5R__print_token(ref->ref.obj.token), + (int)sizeof(H5R_ref_priv_t), ref->info.obj.filename, H5R__print_token(ref->info.obj.token), ref->encode_size); done: @@ -281,14 +303,14 @@ done: /*------------------------------------------------------------------------- * Function: H5R__create_region * - * Purpose: Creates a region reference. + * Purpose: Creates a region reference * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t -H5R__create_region(const H5VL_token_t *obj_token, size_t token_size, +H5R__create_region(const H5O_token_t *obj_token, size_t token_size, H5S_t *space, H5R_ref_priv_t *ref) { size_t encode_size; @@ -300,14 +322,14 @@ H5R__create_region(const H5VL_token_t *obj_token, size_t token_size, HDassert(ref); /* Create new reference */ - H5MM_memcpy(&ref->ref.obj.token, obj_token, token_size); - ref->ref.obj.filename = NULL; - if(NULL == (ref->ref.reg.space = H5S_copy(space, FALSE, TRUE))) + ref->info.obj.filename = NULL; + if(NULL == (ref->info.reg.space = H5S_copy(space, FALSE, TRUE))) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "unable to copy dataspace") ref->loc_id = H5I_INVALID_HID; ref->type = (uint8_t)H5R_DATASET_REGION2; - ref->token_size = (uint8_t)token_size; + if(H5R__set_obj_token(ref, obj_token, token_size) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTSET, FAIL, "unable to set object token") /* Cache encoding size (assume no external reference) */ if(H5R__encode(NULL, ref, NULL, &encode_size, 0) < 0) @@ -315,14 +337,14 @@ H5R__create_region(const H5VL_token_t *obj_token, size_t token_size, ref->encode_size = (uint32_t)encode_size; H5R_LOG_DEBUG("Created region reference, %d, filename=%s, obj_addr=%s, encode size=%u", - (int)sizeof(H5R_ref_priv_t), ref->ref.obj.filename, H5R__print_token(ref->ref.obj.token), + (int)sizeof(H5R_ref_priv_t), ref->info.obj.filename, H5R__print_token(ref->info.obj.token), ref->encode_size); done: if(ret_value < 0) - if(ref->ref.reg.space) { - H5S_close(ref->ref.reg.space); - ref->ref.reg.space = NULL; + if(ref->info.reg.space) { + H5S_close(ref->info.reg.space); + ref->info.reg.space = NULL; } /* end if */ FUNC_LEAVE_NOAPI(ret_value) @@ -332,14 +354,14 @@ done: /*------------------------------------------------------------------------- * Function: H5R__create_attr * - * Purpose: Creates an attribute reference. + * Purpose: Creates an attribute reference * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t -H5R__create_attr(const H5VL_token_t *obj_token, size_t token_size, +H5R__create_attr(const H5O_token_t *obj_token, size_t token_size, const char *attr_name, H5R_ref_priv_t *ref) { size_t encode_size; @@ -355,14 +377,14 @@ H5R__create_attr(const H5VL_token_t *obj_token, size_t token_size, HGOTO_ERROR(H5E_REFERENCE, H5E_ARGS, FAIL, "attribute name too long (%d > %d)", (int)HDstrlen(attr_name), H5R_MAX_STRING_LEN) /* Create new reference */ - H5MM_memcpy(&ref->ref.obj.token, obj_token, token_size); - ref->ref.obj.filename = NULL; - if(NULL == (ref->ref.attr.name = HDstrdup(attr_name))) + ref->info.obj.filename = NULL; + if(NULL == (ref->info.attr.name = HDstrdup(attr_name))) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "Cannot copy attribute name") ref->loc_id = H5I_INVALID_HID; ref->type = (uint8_t)H5R_ATTR; - ref->token_size = (uint8_t)token_size; + if(H5R__set_obj_token(ref, obj_token, token_size) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTSET, FAIL, "unable to set object token") /* Cache encoding size (assume no external reference) */ if(H5R__encode(NULL, ref, NULL, &encode_size, 0) < 0) @@ -370,13 +392,13 @@ H5R__create_attr(const H5VL_token_t *obj_token, size_t token_size, ref->encode_size = (uint32_t)encode_size; H5R_LOG_DEBUG("Created attribute reference, %d, filename=%s, obj_addr=%s, attr name=%s, encode size=%u", - (int)sizeof(H5R_ref_priv_t), ref->ref.obj.filename, H5R__print_token(ref->ref.obj.token), - ref->ref.attr.name, ref->encode_size); + (int)sizeof(H5R_ref_priv_t), ref->info.obj.filename, H5R__print_token(ref->info.obj.token), + ref->info.attr.name, ref->encode_size); done: if(ret_value < 0) { - H5MM_xfree(ref->ref.attr.name); - ref->ref.attr.name = NULL; + H5MM_xfree(ref->info.attr.name); + ref->info.attr.name = NULL; } /* end if */ FUNC_LEAVE_NOAPI(ret_value) @@ -386,9 +408,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__destroy * - * Purpose: Destroy reference. + * Purpose: Destroy a reference * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -401,22 +423,22 @@ H5R__destroy(H5R_ref_priv_t *ref) HDassert(ref != NULL); - H5MM_xfree(ref->ref.obj.filename); - ref->ref.obj.filename = NULL; + H5MM_xfree(ref->info.obj.filename); + ref->info.obj.filename = NULL; switch(ref->type) { case H5R_OBJECT2: break; case H5R_DATASET_REGION2: - if(H5S_close(ref->ref.reg.space) < 0) + if(H5S_close(ref->info.reg.space) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTFREE, FAIL, "Cannot close dataspace") - ref->ref.reg.space = NULL; + ref->info.reg.space = NULL; break; case H5R_ATTR: - H5MM_xfree(ref->ref.attr.name); - ref->ref.attr.name = NULL; + H5MM_xfree(ref->info.attr.name); + ref->info.attr.name = NULL; break; case H5R_OBJECT1: @@ -433,8 +455,15 @@ H5R__destroy(H5R_ref_priv_t *ref) } /* end switch */ /* Decrement refcount of attached loc_id */ - if(ref->type && (ref->loc_id != H5I_INVALID_HID) && (H5I_dec_ref(ref->loc_id) < 0)) - HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDEC, FAIL, "decrementing location ID failed") + if(ref->type && (ref->loc_id != H5I_INVALID_HID)) { + if(ref->app_ref) { + if(H5I_dec_app_ref(ref->loc_id) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDEC, FAIL, "decrementing location ID failed") + } else { + if(H5I_dec_ref(ref->loc_id) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDEC, FAIL, "decrementing location ID failed") + } + } done: FUNC_LEAVE_NOAPI(ret_value) @@ -444,14 +473,14 @@ done: /*------------------------------------------------------------------------- * Function: H5R__set_loc_id * - * Purpose: Attach location ID to reference and increment location refcount. + * Purpose: Attach location ID to reference and increment location refcount. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t -H5R__set_loc_id(H5R_ref_priv_t *ref, hid_t id, hbool_t inc_ref) +H5R__set_loc_id(H5R_ref_priv_t *ref, hid_t id, hbool_t inc_ref, hbool_t app_ref) { herr_t ret_value = SUCCEED; /* Return value */ @@ -460,14 +489,26 @@ H5R__set_loc_id(H5R_ref_priv_t *ref, hid_t id, hbool_t inc_ref) HDassert(ref != NULL); HDassert(id != H5I_INVALID_HID); - /* If a location ID was previously assigned, decrement refcount and assign new one */ - if((ref->loc_id != H5I_INVALID_HID) && (H5I_dec_ref(ref->loc_id) < 0)) - HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDEC, FAIL, "decrementing location ID failed") + /* If a location ID was previously assigned, decrement refcount and + * assign new one */ + if((ref->loc_id != H5I_INVALID_HID)) { + if(ref->app_ref) { + if(H5I_dec_app_ref(ref->loc_id) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDEC, FAIL, "decrementing location ID failed") + } else { + if(H5I_dec_ref(ref->loc_id) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDEC, FAIL, "decrementing location ID failed") + } + } ref->loc_id = id; - /* Prevent location ID from being freed until reference is destroyed */ - if(inc_ref && H5I_inc_ref(ref->loc_id, FALSE) < 0) + /* Prevent location ID from being freed until reference is destroyed, + * set app_ref if necessary as references are exposed to users and are + * expected to be destroyed, this allows the loc_id to be cleanly released + * on shutdown if users fail to call H5Rdestroy(). */ + if(inc_ref && H5I_inc_ref(ref->loc_id, app_ref) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTINC, FAIL, "incrementing location ID failed") + ref->app_ref = app_ref; done: FUNC_LEAVE_NOAPI(ret_value) @@ -477,9 +518,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__get_loc_id * - * Purpose: Retrieve location ID attached to existing reference. + * Purpose: Retrieve location ID attached to existing reference. * - * Return: Valid ID on success/Negative on failure + * Return: Valid ID on success / H5I_INVALID_HID on failure * *------------------------------------------------------------------------- */ @@ -501,9 +542,9 @@ H5R__get_loc_id(const H5R_ref_priv_t *ref) /*------------------------------------------------------------------------- * Function: H5R__reopen_file * - * Purpose: Re-open referenced file using file access property list. + * Purpose: Re-open referenced file using file access property list. * - * Return: Valid ID on success/Negative on failure + * Return: Valid ID on success / H5I_INVALID_HID on failure * *------------------------------------------------------------------------- */ @@ -559,7 +600,7 @@ H5R__reopen_file(H5R_ref_priv_t *ref, hid_t fapl_id) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTINIT, H5I_INVALID_HID, "unable to make file 'post open' callback") /* Attach loc_id to reference */ - if(H5R__set_loc_id((H5R_ref_priv_t *)ref, ret_value, FALSE) < 0) + if(H5R__set_loc_id((H5R_ref_priv_t *)ref, ret_value, FALSE, TRUE) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTSET, H5I_INVALID_HID, "unable to attach location id to reference") done: @@ -570,9 +611,10 @@ done: /*------------------------------------------------------------------------- * Function: H5R__get_type * - * Purpose: Given a reference to some object, return the type of that reference. + * Purpose: Given a reference to some object, return the type of that + * reference. * - * Return: Type of the reference + * Return: Type of the reference * *------------------------------------------------------------------------- */ @@ -593,9 +635,9 @@ H5R__get_type(const H5R_ref_priv_t *ref) /*------------------------------------------------------------------------- * Function: H5R__equal * - * Purpose: Compare two references + * Purpose: Compare two references * - * Return: TRUE if equal, FALSE if unequal, FAIL if error + * Return: TRUE if equal, FALSE if unequal, FAIL if error * *------------------------------------------------------------------------- */ @@ -616,27 +658,27 @@ H5R__equal(const H5R_ref_priv_t *ref1, const H5R_ref_priv_t *ref2) /* Compare object addresses */ if(ref1->token_size != ref2->token_size) HGOTO_DONE(FALSE); - if(0 != HDmemcmp(&ref1->ref.obj.token, &ref2->ref.obj.token, ref1->token_size)) + if(0 != HDmemcmp(&ref1->info.obj.token, &ref2->info.obj.token, ref1->token_size)) HGOTO_DONE(FALSE); /* Compare filenames */ - if((ref1->ref.obj.filename && (NULL == ref2->ref.obj.filename)) - || ((NULL == ref1->ref.obj.filename) && ref2->ref.obj.filename)) + if((ref1->info.obj.filename && (NULL == ref2->info.obj.filename)) + || ((NULL == ref1->info.obj.filename) && ref2->info.obj.filename)) HGOTO_DONE(FALSE); - if(ref1->ref.obj.filename && ref1->ref.obj.filename - && (0 != HDstrcmp(ref1->ref.obj.filename, ref2->ref.obj.filename))) + if(ref1->info.obj.filename && ref1->info.obj.filename + && (0 != HDstrcmp(ref1->info.obj.filename, ref2->info.obj.filename))) HGOTO_DONE(FALSE); switch(ref1->type) { case H5R_OBJECT2: break; case H5R_DATASET_REGION2: - if((ret_value = H5S_extent_equal(ref1->ref.reg.space, ref2->ref.reg.space)) < 0) + if((ret_value = H5S_extent_equal(ref1->info.reg.space, ref2->info.reg.space)) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOMPARE, FAIL, "cannot compare dataspace extents") break; case H5R_ATTR: - HDassert(ref1->ref.attr.name && ref2->ref.attr.name); - if(0 != HDstrcmp(ref1->ref.attr.name, ref2->ref.attr.name)) + HDassert(ref1->info.attr.name && ref2->info.attr.name); + if(0 != HDstrcmp(ref1->info.attr.name, ref2->info.attr.name)) HGOTO_DONE(FALSE); break; case H5R_OBJECT1: @@ -658,9 +700,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__copy * - * Purpose: Copy a reference + * Purpose: Copy a reference * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -673,7 +715,7 @@ H5R__copy(const H5R_ref_priv_t *src_ref, H5R_ref_priv_t *dst_ref) HDassert((src_ref != NULL) && (dst_ref != NULL)); - H5MM_memcpy(&dst_ref->ref.obj.token, &src_ref->ref.obj.token, src_ref->token_size); + H5MM_memcpy(&dst_ref->info.obj.token, &src_ref->info.obj.token, sizeof(H5O_token_t)); dst_ref->encode_size = src_ref->encode_size; dst_ref->type = src_ref->type; dst_ref->token_size = src_ref->token_size; @@ -682,11 +724,11 @@ H5R__copy(const H5R_ref_priv_t *src_ref, H5R_ref_priv_t *dst_ref) case H5R_OBJECT2: break; case H5R_DATASET_REGION2: - if(NULL == (dst_ref->ref.reg.space = H5S_copy(src_ref->ref.reg.space, FALSE, TRUE))) + if(NULL == (dst_ref->info.reg.space = H5S_copy(src_ref->info.reg.space, FALSE, TRUE))) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "unable to copy dataspace") break; case H5R_ATTR: - if(NULL == (dst_ref->ref.attr.name = HDstrdup(src_ref->ref.attr.name))) + if(NULL == (dst_ref->info.attr.name = HDstrdup(src_ref->info.attr.name))) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "Cannot copy attribute name") break; case H5R_OBJECT1: @@ -702,16 +744,17 @@ H5R__copy(const H5R_ref_priv_t *src_ref, H5R_ref_priv_t *dst_ref) /* We only need to keep a copy of the filename if we don't have the loc_id */ if(src_ref->loc_id == H5I_INVALID_HID) { - HDassert(src_ref->ref.obj.filename); + HDassert(src_ref->info.obj.filename); - if(NULL == (dst_ref->ref.obj.filename = HDstrdup(src_ref->ref.obj.filename))) + if(NULL == (dst_ref->info.obj.filename = HDstrdup(src_ref->info.obj.filename))) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "Cannot copy filename") dst_ref->loc_id = H5I_INVALID_HID; - } else { - dst_ref->ref.obj.filename = NULL; + } + else { + dst_ref->info.obj.filename = NULL; /* Set location ID and hold reference to it */ - if(H5R__set_loc_id(dst_ref, src_ref->loc_id, TRUE) < 0) + if(H5R__set_loc_id(dst_ref, src_ref->loc_id, TRUE, TRUE) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTSET, FAIL, "cannot set reference location ID") } @@ -723,14 +766,14 @@ done: /*------------------------------------------------------------------------- * Function: H5R__get_obj_token * - * Purpose: Given a reference to some object, get the encoded object addr. + * Purpose: Given a reference to some object, get the encoded token. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t -H5R__get_obj_token(const H5R_ref_priv_t *ref, H5VL_token_t *obj_token, +H5R__get_obj_token(const H5R_ref_priv_t *ref, H5O_token_t *obj_token, size_t *token_size) { herr_t ret_value = SUCCEED; /* Return value */ @@ -738,12 +781,12 @@ H5R__get_obj_token(const H5R_ref_priv_t *ref, H5VL_token_t *obj_token, FUNC_ENTER_PACKAGE HDassert(ref != NULL); - HDassert(ref->token_size <= H5VL_MAX_TOKEN_SIZE); + HDassert(ref->token_size <= H5O_MAX_TOKEN_SIZE); if(obj_token) { if(0 == ref->token_size) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "NULL token size") - H5MM_memcpy(obj_token, &ref->ref.obj.token, ref->token_size); + H5MM_memcpy(obj_token, &ref->info.obj.token, sizeof(H5O_token_t)); } if(token_size) *token_size = ref->token_size; @@ -756,14 +799,14 @@ done: /*------------------------------------------------------------------------- * Function: H5R__set_obj_token * - * Purpose: Given a reference to some object, set the encoded object addr. + * Purpose: Given a reference to some object, set the encoded token. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t -H5R__set_obj_token(H5R_ref_priv_t *ref, const H5VL_token_t *obj_token, +H5R__set_obj_token(H5R_ref_priv_t *ref, const H5O_token_t *obj_token, size_t token_size) { herr_t ret_value = SUCCEED; /* Return value */ @@ -773,9 +816,10 @@ H5R__set_obj_token(H5R_ref_priv_t *ref, const H5VL_token_t *obj_token, HDassert(ref != NULL); HDassert(obj_token); HDassert(token_size); - HDassert(token_size <= H5VL_MAX_TOKEN_SIZE); + HDassert(token_size <= H5O_MAX_TOKEN_SIZE); - H5MM_memcpy(&ref->ref.obj.token, obj_token, ref->token_size); + H5MM_memcpy(&ref->info.obj.token, obj_token, sizeof(H5O_token_t)); + HDassert(token_size <= 255); ref->token_size = (uint8_t)token_size; FUNC_LEAVE_NOAPI(ret_value) @@ -785,11 +829,11 @@ H5R__set_obj_token(H5R_ref_priv_t *ref, const H5VL_token_t *obj_token, /*------------------------------------------------------------------------- * Function: H5R__get_region * - * Purpose: Given a reference to some object, creates a copy of the dataset - * pointed to's dataspace and defines a selection in the copy which is the - * region pointed to. + * Purpose: Given a reference to some object, creates a copy of the + * dataset pointed to's dataspace and defines a selection in + * the copy which is the region pointed to. * - * Return: Pointer to the dataspace on success/NULL on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -805,7 +849,7 @@ H5R__get_region(const H5R_ref_priv_t *ref, H5S_t *space) HDassert(space); /* Copy reference selection to destination */ - if(H5S_select_copy(space, ref->ref.reg.space, FALSE) < 0) + if(H5S_select_copy(space, ref->info.reg.space, FALSE) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "unable to copy selection") done: @@ -816,10 +860,10 @@ done: /*------------------------------------------------------------------------- * Function: H5R__get_file_name * - * Purpose: Given a reference to some object, determine a file name of the - * object located into. + * Purpose: Given a reference to some object, determine a file name of + * the object located into. * - * Return: Non-negative length of the path on success/Negative on failure + * Return: Non-negative length of the path on success / -1 on failure * *------------------------------------------------------------------------- */ @@ -835,17 +879,17 @@ H5R__get_file_name(const H5R_ref_priv_t *ref, char *buf, size_t size) HDassert(ref != NULL); /* Return if that reference has no filename set */ - if(!ref->ref.obj.filename) + if(!ref->info.obj.filename) HGOTO_ERROR(H5E_REFERENCE, H5E_ARGS, (-1), "no filename available for that reference") /* Get the file name length */ - copy_len = HDstrlen(ref->ref.obj.filename); + copy_len = HDstrlen(ref->info.obj.filename); HDassert(copy_len <= H5R_MAX_STRING_LEN); /* Copy the file name */ if(buf) { copy_len = MIN(copy_len, size - 1); - H5MM_memcpy(buf, ref->ref.obj.filename, copy_len); + H5MM_memcpy(buf, ref->info.obj.filename, copy_len); buf[copy_len] = '\0'; } ret_value = (ssize_t)(copy_len + 1); @@ -858,9 +902,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__get_attr_name * - * Purpose: Given a reference to some attribute, determine its name. + * Purpose: Given a reference to some attribute, determine its name. * - * Return: Non-negative length of the path on success/Negative on failure + * Return: Non-negative length of the path on success / -1 on failure * *------------------------------------------------------------------------- */ @@ -877,13 +921,13 @@ H5R__get_attr_name(const H5R_ref_priv_t *ref, char *buf, size_t size) HDassert(ref->type == H5R_ATTR); /* Get the attribute name length */ - attr_name_len = HDstrlen(ref->ref.attr.name); + attr_name_len = HDstrlen(ref->info.attr.name); HDassert(attr_name_len <= H5R_MAX_STRING_LEN); /* Get the attribute name */ if(buf) { size_t copy_len = MIN(attr_name_len, size - 1); - H5MM_memcpy(buf, ref->ref.attr.name, copy_len); + H5MM_memcpy(buf, ref->info.attr.name, copy_len); buf[copy_len] = '\0'; } @@ -896,9 +940,9 @@ H5R__get_attr_name(const H5R_ref_priv_t *ref, char *buf, size_t size) /*------------------------------------------------------------------------- * Function: H5R__encode * - * Purpose: Private function for H5Rencode. + * Purpose: Private function for H5Rencode * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -940,7 +984,7 @@ H5R__encode(const char *filename, const H5R_ref_priv_t *ref, unsigned char *buf, encode_size += H5R_ENCODE_HEADER_SIZE; /* Encode object token */ - H5R_ENCODE_VAR(H5R__encode_obj_token, &ref->ref.obj.token, ref->token_size, + H5R_ENCODE_VAR(H5R__encode_obj_token, &ref->info.obj.token, ref->token_size, p, buf_size, encode_size, "Cannot encode object address"); /** @@ -962,13 +1006,13 @@ H5R__encode(const char *filename, const H5R_ref_priv_t *ref, unsigned char *buf, case H5R_DATASET_REGION2: /* Encode dataspace */ - H5R_ENCODE(H5R__encode_region, ref->ref.reg.space, p, buf_size, + H5R_ENCODE(H5R__encode_region, ref->info.reg.space, p, buf_size, encode_size, "Cannot encode region"); break; case H5R_ATTR: /* Encode attribute name */ - H5R_ENCODE(H5R__encode_string, ref->ref.attr.name, p, buf_size, + H5R_ENCODE(H5R__encode_string, ref->info.attr.name, p, buf_size, encode_size, "Cannot encode attribute name"); break; @@ -994,9 +1038,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__decode * - * Purpose: Private function for H5Rdecode. + * Purpose: Private function for H5Rdecode * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -1031,28 +1075,29 @@ H5R__decode(const unsigned char *buf, size_t *nbytes, H5R_ref_priv_t *ref) decode_size += H5R_ENCODE_HEADER_SIZE; /* Decode object token */ - H5R_DECODE_VAR(H5R__decode_obj_token, &ref->ref.obj.token, &ref->token_size, + H5R_DECODE_VAR(H5R__decode_obj_token, &ref->info.obj.token, &ref->token_size, p, buf_size, decode_size, "Cannot decode object address"); /* We do not need to store the filename if the reference is internal */ if(flags & H5R_IS_EXTERNAL) { /* Decode file name */ - H5R_DECODE(H5R__decode_string, &ref->ref.obj.filename, p, buf_size, + H5R_DECODE(H5R__decode_string, &ref->info.obj.filename, p, buf_size, decode_size, "Cannot decode filename"); - } else - ref->ref.obj.filename = NULL; + } + else + ref->info.obj.filename = NULL; switch(ref->type) { case H5R_OBJECT2: break; case H5R_DATASET_REGION2: /* Decode dataspace */ - H5R_DECODE(H5R__decode_region, &ref->ref.reg.space, p, buf_size, + H5R_DECODE(H5R__decode_region, &ref->info.reg.space, p, buf_size, decode_size, "Cannot decode region"); break; case H5R_ATTR: /* Decode attribute name */ - H5R_DECODE(H5R__decode_string, &ref->ref.attr.name, p, buf_size, + H5R_DECODE(H5R__decode_string, &ref->info.attr.name, p, buf_size, decode_size, "Cannot decode attribute name"); break; case H5R_OBJECT1: @@ -1073,7 +1118,7 @@ H5R__decode(const unsigned char *buf, size_t *nbytes, H5R_ref_priv_t *ref) ref->encode_size = (uint32_t)decode_size; H5R_LOG_DEBUG("Decoded reference, filename=%s, obj_addr=%s, encode size=%u", - ref->ref.obj.filename, H5R__print_token(ref->ref.obj.token), + ref->info.obj.filename, H5R__print_token(ref->info.obj.token), ref->encode_size); *nbytes = decode_size; @@ -1086,14 +1131,14 @@ done: /*------------------------------------------------------------------------- * Function: H5R__encode_obj_token * - * Purpose: Encode an object address. + * Purpose: Encode an object address. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ static herr_t -H5R__encode_obj_token(const H5VL_token_t *obj_token, size_t token_size, +H5R__encode_obj_token(const H5O_token_t *obj_token, size_t token_size, unsigned char *buf, size_t *nalloc) { herr_t ret_value = SUCCEED; @@ -1121,15 +1166,15 @@ H5R__encode_obj_token(const H5VL_token_t *obj_token, size_t token_size, /*------------------------------------------------------------------------- * Function: H5R__decode_obj_token * - * Purpose: Decode an object address. + * Purpose: Decode an object address. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ static herr_t H5R__decode_obj_token(const unsigned char *buf, size_t *nbytes, - H5VL_token_t *obj_token, uint8_t *token_size) + H5O_token_t *obj_token, uint8_t *token_size) { const uint8_t *p = (const uint8_t *)buf; herr_t ret_value = SUCCEED; @@ -1147,13 +1192,16 @@ H5R__decode_obj_token(const unsigned char *buf, size_t *nbytes, /* Get token size */ *token_size = *p++; - if(*token_size > sizeof(H5VL_token_t)) + if(*token_size > sizeof(H5O_token_t)) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDECODE, FAIL, "Invalid token size (%u)", *token_size) + /* Make sure that token is initialized */ + HDmemset(obj_token, 0, sizeof(H5O_token_t)); + /* Decode token */ H5MM_memcpy(obj_token, p, *token_size); - *nbytes = (size_t)*token_size + H5_SIZEOF_UINT8_T; + *nbytes = (size_t)(*token_size + H5_SIZEOF_UINT8_T); done: FUNC_LEAVE_NOAPI(ret_value) @@ -1163,9 +1211,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__encode_region * - * Purpose: Encode a selection. + * Purpose: Encode a selection. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -1212,9 +1260,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__decode_region * - * Purpose: Decode a selection. + * Purpose: Decode a selection. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -1268,9 +1316,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__encode_string * - * Purpose: Encode a string. + * Purpose: Encode a string. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -1310,9 +1358,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__decode_string * - * Purpose: Decode a string. + * Purpose: Decode a string. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -1357,9 +1405,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__encode_heap * - * Purpose: Encode data and insert into heap (native only). + * Purpose: Encode data and insert into heap (native only). * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -1398,9 +1446,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__decode_heap * - * Purpose: Decode data inserted into heap (native only). + * Purpose: Decode data inserted into heap (native only). * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -1445,9 +1493,9 @@ done: /*------------------------------------------------------------------------- * Function: H5R__free_heap * - * Purpose: Remove data previously inserted into heap (native only). + * Purpose: Remove data previously inserted into heap (native only). * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -1490,15 +1538,15 @@ done: /*------------------------------------------------------------------------- * Function: H5R__decode_token_compat * - * Purpose: Decode an object token. (native only) + * Purpose: Decode an object token. (native only) * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t H5R__decode_token_compat(H5VL_object_t *vol_obj, H5I_type_t type, H5R_type_t ref_type, - const unsigned char *buf, H5VL_token_t *obj_token) + const unsigned char *buf, H5O_token_t *obj_token) { hid_t file_id = H5I_INVALID_HID; /* File ID for region reference */ H5VL_object_t *vol_obj_file = NULL; @@ -1562,14 +1610,14 @@ done: /*------------------------------------------------------------------------- * Function: H5R__encode_token_obj_compat * - * Purpose: Encode an object token. (native only) + * Purpose: Encode an object token. (native only) * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t -H5R__encode_token_obj_compat(const H5VL_token_t *obj_token, size_t token_size, +H5R__encode_token_obj_compat(const H5O_token_t *obj_token, size_t token_size, unsigned char *buf, size_t *nalloc) { herr_t ret_value = SUCCEED; @@ -1593,15 +1641,15 @@ H5R__encode_token_obj_compat(const H5VL_token_t *obj_token, size_t token_size, /*------------------------------------------------------------------------- * Function: H5R__decode_token_obj_compat * - * Purpose: Decode an object token. (native only) + * Purpose: Decode an object token. (native only) * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t H5R__decode_token_obj_compat(const unsigned char *buf, size_t *nbytes, - H5VL_token_t *obj_token, size_t token_size) + H5O_token_t *obj_token, size_t token_size) { herr_t ret_value = SUCCEED; @@ -1628,14 +1676,15 @@ done: /*------------------------------------------------------------------------- * Function: H5R__encode_token_region_compat * - * Purpose: Encode dataset selection and insert data into heap (native only). + * Purpose: Encode dataset selection and insert data into heap + * (native only). * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t -H5R__encode_token_region_compat(H5F_t *f, const H5VL_token_t *obj_token, +H5R__encode_token_region_compat(H5F_t *f, const H5O_token_t *obj_token, size_t token_size, H5S_t *space, unsigned char *buf, size_t *nalloc) { size_t buf_size; @@ -1703,19 +1752,20 @@ done: /*------------------------------------------------------------------------- * Function: H5R__decode_token_region_compat * - * Purpose: Decode dataset selection from data inserted into heap (native only). + * Purpose: Decode dataset selection from data inserted into heap + * (native only). * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ herr_t H5R__decode_token_region_compat(H5F_t *f, const unsigned char *buf, - size_t *nbytes, H5VL_token_t *obj_token, size_t token_size, + size_t *nbytes, H5O_token_t *obj_token, size_t token_size, H5S_t **space_ptr) { unsigned char *data = NULL; - H5VL_token_t token = { 0 }; + H5O_token_t token = { 0 }; size_t data_size; const uint8_t *p; herr_t ret_value = SUCCEED; @@ -1739,12 +1789,13 @@ H5R__decode_token_region_compat(H5F_t *f, const unsigned char *buf, if(space_ptr) { H5O_loc_t oloc; /* Object location */ H5S_t *space = NULL; - const uint8_t *q = (const uint8_t *)&token; /* Initialize the object location */ H5O_loc_reset(&oloc); oloc.file = f; - H5F_addr_decode(f, &q, &oloc.addr); + + if(H5VL_native_token_to_addr(f, H5I_FILE, token, &oloc.addr) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") /* Open and copy the dataset's dataspace */ if(NULL == (space = H5S_read(&oloc))) @@ -1757,9 +1808,10 @@ H5R__decode_token_region_compat(H5F_t *f, const unsigned char *buf, *space_ptr = space; } if(obj_token) - H5MM_memcpy(obj_token, &token, token_size); + H5MM_memcpy(obj_token, &token, sizeof(H5O_token_t)); done: H5MM_free(data); FUNC_LEAVE_NOAPI(ret_value) } /* end H5R__decode_token_region_compat() */ + diff --git a/src/H5Rpkg.h b/src/H5Rpkg.h index 7471487..36cf805 100644 --- a/src/H5Rpkg.h +++ b/src/H5Rpkg.h @@ -40,8 +40,8 @@ #define H5R_IS_EXTERNAL 0x1 /* Set when encoding reference to external file */ /* Macros for convenience */ -#define H5R_REF_FILENAME(x) ((x)->ref.obj.filename) -#define H5R_REF_ATTRNAME(x) ((x)->ref.attr.name) +#define H5R_REF_FILENAME(x) ((x)->info.obj.filename) +#define H5R_REF_ATTRNAME(x) ((x)->info.attr.name) /* Header size */ #define H5R_ENCODE_HEADER_SIZE (2 * H5_SIZEOF_UINT8_T) @@ -52,7 +52,7 @@ /* Object reference */ typedef struct H5R_ref_priv_obj_t { - H5VL_token_t token; /* Object token */ + H5O_token_t token; /* Object token */ char *filename; /* File name */ } H5R_ref_priv_obj_t; @@ -74,12 +74,12 @@ typedef struct H5R_ref_priv_t { H5R_ref_priv_obj_t obj;/* Object reference */ H5R_ref_priv_reg_t reg;/* Region reference */ H5R_ref_priv_attr_t attr;/* Attribute Reference */ - } ref; + } info; hid_t loc_id; /* Cached location identifier */ uint32_t encode_size; /* Cached encoding size */ int8_t type; /* Reference type */ uint8_t token_size; /* Cached token size */ - char unused[18]; /* Unused */ + hbool_t app_ref; /* App ref on loc_id */ } H5R_ref_priv_t; /*****************************/ @@ -90,12 +90,12 @@ typedef struct H5R_ref_priv_t { /******************************/ /* Package Private Prototypes */ /******************************/ -H5_DLL herr_t H5R__create_object(const H5VL_token_t *obj_token, size_t token_size, H5R_ref_priv_t *ref); -H5_DLL herr_t H5R__create_region(const H5VL_token_t *obj_token, size_t token_size, H5S_t *space, H5R_ref_priv_t *ref); -H5_DLL herr_t H5R__create_attr(const H5VL_token_t *obj_token, size_t token_size, const char *attr_name, H5R_ref_priv_t *ref); +H5_DLL herr_t H5R__create_object(const H5O_token_t *obj_token, size_t token_size, H5R_ref_priv_t *ref); +H5_DLL herr_t H5R__create_region(const H5O_token_t *obj_token, size_t token_size, H5S_t *space, H5R_ref_priv_t *ref); +H5_DLL herr_t H5R__create_attr(const H5O_token_t *obj_token, size_t token_size, const char *attr_name, H5R_ref_priv_t *ref); H5_DLL herr_t H5R__destroy(H5R_ref_priv_t *ref); -H5_DLL herr_t H5R__set_loc_id(H5R_ref_priv_t *ref, hid_t id, hbool_t inc_ref); +H5_DLL herr_t H5R__set_loc_id(H5R_ref_priv_t *ref, hid_t id, hbool_t inc_ref, hbool_t app_ref); H5_DLL hid_t H5R__get_loc_id(const H5R_ref_priv_t *ref); H5_DLL hid_t H5R__reopen_file(H5R_ref_priv_t *ref, hid_t fapl_id); @@ -103,8 +103,8 @@ H5_DLL H5R_type_t H5R__get_type(const H5R_ref_priv_t *ref); H5_DLL htri_t H5R__equal(const H5R_ref_priv_t *ref1, const H5R_ref_priv_t *ref2); H5_DLL herr_t H5R__copy(const H5R_ref_priv_t *src_ref, H5R_ref_priv_t *dst_ref); -H5_DLL herr_t H5R__get_obj_token(const H5R_ref_priv_t *ref, H5VL_token_t *obj_token, size_t *token_size); -H5_DLL herr_t H5R__set_obj_token(H5R_ref_priv_t *ref, const H5VL_token_t *obj_token, size_t token_size); +H5_DLL herr_t H5R__get_obj_token(const H5R_ref_priv_t *ref, H5O_token_t *obj_token, size_t *token_size); +H5_DLL herr_t H5R__set_obj_token(H5R_ref_priv_t *ref, const H5O_token_t *obj_token, size_t token_size); H5_DLL herr_t H5R__get_region(const H5R_ref_priv_t *ref, H5S_t *space); H5_DLL ssize_t H5R__get_file_name(const H5R_ref_priv_t *ref, char *buf, size_t size); @@ -118,13 +118,13 @@ H5_DLL herr_t H5R__encode_heap(H5F_t *f, unsigned char *buf, size_t *nalloc, c H5_DLL herr_t H5R__decode_heap(H5F_t *f, const unsigned char *buf, size_t *nbytes, unsigned char **data_ptr, size_t *data_size); H5_DLL herr_t H5R__free_heap(H5F_t *f, const unsigned char *buf, size_t nbytes); -H5_DLL herr_t H5R__decode_token_compat(H5VL_object_t *vol_obj, H5I_type_t type, H5R_type_t ref_type, const unsigned char *buf, H5VL_token_t *obj_token); +H5_DLL herr_t H5R__decode_token_compat(H5VL_object_t *vol_obj, H5I_type_t type, H5R_type_t ref_type, const unsigned char *buf, H5O_token_t *obj_token); -H5_DLL herr_t H5R__encode_token_obj_compat(const H5VL_token_t *obj_token, size_t token_size, unsigned char *buf, size_t *nalloc); -H5_DLL herr_t H5R__decode_token_obj_compat(const unsigned char *buf, size_t *nbytes, H5VL_token_t *obj_token, size_t token_size); +H5_DLL herr_t H5R__encode_token_obj_compat(const H5O_token_t *obj_token, size_t token_size, unsigned char *buf, size_t *nalloc); +H5_DLL herr_t H5R__decode_token_obj_compat(const unsigned char *buf, size_t *nbytes, H5O_token_t *obj_token, size_t token_size); -H5_DLL herr_t H5R__encode_token_region_compat(H5F_t *f, const H5VL_token_t *obj_token, size_t token_size, H5S_t *space, unsigned char *buf, size_t *nalloc); -H5_DLL herr_t H5R__decode_token_region_compat(H5F_t *f, const unsigned char *buf, size_t *nbytes, H5VL_token_t *obj_token, size_t token_size, H5S_t **space_ptr); +H5_DLL herr_t H5R__encode_token_region_compat(H5F_t *f, const H5O_token_t *obj_token, size_t token_size, H5S_t *space, unsigned char *buf, size_t *nalloc); +H5_DLL herr_t H5R__decode_token_region_compat(H5F_t *f, const unsigned char *buf, size_t *nbytes, H5O_token_t *obj_token, size_t token_size, H5S_t **space_ptr); #endif /* _H5Rpkg_H */ diff --git a/src/H5Rpublic.h b/src/H5Rpublic.h index cfbf3c8..13d82d7 100644 --- a/src/H5Rpublic.h +++ b/src/H5Rpublic.h @@ -80,7 +80,10 @@ typedef struct { * should always be used with the current reference API. */ typedef struct { - uint8_t __data[H5R_REF_BUF_SIZE]; + union { + uint8_t __data[H5R_REF_BUF_SIZE]; /* opaque data */ + int64_t align; /* ensures alignment */ + } u; } H5R_ref_t; /********************/ @@ -108,16 +111,16 @@ H5_DLL htri_t H5Requal(const H5R_ref_t *ref1_ptr, const H5R_ref_t *ref2_ptr); H5_DLL herr_t H5Rcopy(const H5R_ref_t *src_ref_ptr, H5R_ref_t *dst_ref_ptr); /* Dereference */ -H5_DLL hid_t H5Ropen_object(const H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); -H5_DLL hid_t H5Ropen_region(const H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); -H5_DLL hid_t H5Ropen_attr(const H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t aapl_id); +H5_DLL hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); +H5_DLL hid_t H5Ropen_region(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); +H5_DLL hid_t H5Ropen_attr(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t aapl_id); /* Get type */ -H5_DLL herr_t H5Rget_obj_type3(const H5R_ref_t *ref_ptr, hid_t rapl_id, H5O_type_t *obj_type); +H5_DLL herr_t H5Rget_obj_type3(H5R_ref_t *ref_ptr, hid_t rapl_id, H5O_type_t *obj_type); /* Get name */ H5_DLL ssize_t H5Rget_file_name(const H5R_ref_t *ref_ptr, char *buf, size_t size); -H5_DLL ssize_t H5Rget_obj_name(const H5R_ref_t *ref_ptr, hid_t rapl_id, char *buf, size_t size); +H5_DLL ssize_t H5Rget_obj_name(H5R_ref_t *ref_ptr, hid_t rapl_id, char *buf, size_t size); H5_DLL ssize_t H5Rget_attr_name(const H5R_ref_t *ref_ptr, char *buf, size_t size); /* Symbols defined for compatibility with previous versions of the HDF5 API. @@ -652,7 +652,7 @@ int H5SL_term_package(void) /* Terminate all the factories */ if(H5SL_fac_nused_g > 0) { size_t i; - herr_t ret; + herr_t H5_ATTR_NDEBUG_UNUSED ret; for(i = 0; i < H5SL_fac_nused_g; i++) { ret = H5FL_fac_term(H5SL_fac_g[i]); diff --git a/src/H5SMcache.c b/src/H5SMcache.c index ee28fa4..6d0f2b0 100644 --- a/src/H5SMcache.c +++ b/src/H5SMcache.c @@ -212,8 +212,8 @@ H5SM__cache_table_verify_chksum(const void *_image, size_t len, void H5_ATTR_UNU *------------------------------------------------------------------------- */ static void * -H5SM__cache_table_deserialize(const void *_image, size_t len, void *_udata, - hbool_t H5_ATTR_UNUSED *dirty) +H5SM__cache_table_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, + void *_udata, hbool_t H5_ATTR_UNUSED *dirty) { H5F_t *f; /* File pointer -- from user data */ H5SM_master_table_t *table = NULL; /* Shared message table that we deserializing */ @@ -364,7 +364,7 @@ H5SM__cache_table_image_len(const void *_thing, size_t *image_len) *------------------------------------------------------------------------- */ static herr_t -H5SM__cache_table_serialize(const H5F_t *f, void *_image, size_t len, +H5SM__cache_table_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_thing) { H5SM_master_table_t *table = (H5SM_master_table_t *)_thing; /* Shared message table to encode */ @@ -568,8 +568,8 @@ H5SM__cache_list_verify_chksum(const void *_image, size_t H5_ATTR_UNUSED len, vo *------------------------------------------------------------------------- */ static void * -H5SM__cache_list_deserialize(const void *_image, size_t len, void *_udata, - hbool_t H5_ATTR_UNUSED *dirty) +H5SM__cache_list_deserialize(const void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, + void *_udata, hbool_t H5_ATTR_UNUSED *dirty) { H5SM_list_t *list = NULL; /* The SOHM list being read in */ H5SM_list_cache_ud_t *udata = (H5SM_list_cache_ud_t *)_udata; /* User data for callback */ @@ -687,7 +687,7 @@ H5SM__cache_list_image_len(const void *_thing, size_t *image_len) *------------------------------------------------------------------------- */ static herr_t -H5SM__cache_list_serialize(const H5F_t *f, void *_image, size_t len, +H5SM__cache_list_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_NDEBUG_UNUSED len, void *_thing) { H5SM_list_t *list = (H5SM_list_t *)_thing ; /* Instance being serialized */ diff --git a/src/H5Smpio.c b/src/H5Smpio.c index 800913f..6397f4b 100644 --- a/src/H5Smpio.c +++ b/src/H5Smpio.c @@ -293,8 +293,8 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points, for(i = 0; i < num_big_types; i++) { #if MPI_VERSION >= 3 - if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block(bigio_count, - 1, &disp[i*bigio_count], elmt_type, &inner_types[i]))) + if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block((int)bigio_count, + 1, &disp[(hsize_t)i*bigio_count], elmt_type, &inner_types[i]))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code) #else if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)bigio_count, @@ -308,7 +308,7 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points, if(remaining_points) { #if MPI_VERSION >= 3 if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block(remaining_points, - 1, &disp[num_big_types*bigio_count], elmt_type, &inner_types[num_big_types]))) + 1, &disp[(hsize_t)num_big_types*bigio_count], elmt_type, &inner_types[num_big_types]))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code) #else if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)remaining_points, @@ -403,8 +403,11 @@ H5S__mpio_point_type(const H5S_t *space, size_t elmt_size, MPI_Datatype *new_typ curr = space->select.sel_info.pnt_lst->head; for(u = 0 ; u < num_points ; u++) { /* Calculate the displacement of the current point */ - disp[u] = H5VM_array_offset(space->extent.rank, space->extent.size, curr->pnt); - disp[u] *= elmt_size; + hsize_t disp_tmp = H5VM_array_offset(space->extent.rank, space->extent.size, curr->pnt); + if(disp_tmp > LONG_MAX) /* Maximum value of type long */ + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "disp overflow") + disp[u] = (MPI_Aint)disp_tmp; + disp[u] *= (MPI_Aint)elmt_size; /* This is a File Space used to set the file view, so adjust the displacements * to have them monotonically non-decreasing. @@ -423,7 +426,7 @@ H5S__mpio_point_type(const H5S_t *space, size_t elmt_size, MPI_Datatype *new_typ */ if(do_permute) { if(u > 0 && disp[u] < disp[u - 1]) { - unsigned s = 0, l = u, m = u / 2; + hsize_t s = 0, l = u, m = u / 2; *is_permuted = TRUE; do { @@ -565,7 +568,9 @@ H5S__mpio_permute_type(const H5S_t *space, size_t elmt_size, hsize_t **permute, /* Loop, while bytes left in sequence */ while(curr_len > 0) { /* Set the displacement of the current point */ - disp[u] = curr_off; + if(curr_off > LONG_MAX) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "curr_off overflow") + disp[u] = (MPI_Aint)curr_off; /* This is a memory displacement, so for each point selected, * apply the map that was generated by the file selection */ @@ -893,8 +898,14 @@ if(H5DEBUG(S)) ****************************************/ /* Calculate start and extent values of this dimension */ - start_disp = d[i].start * offset[i] * elmt_size; - new_extent = (MPI_Aint)elmt_size * max_xtent[i]; + /* Check if value overflow to cast to type MPI_Aint */ + if(d[i].start > LONG_MAX || offset[i] > LONG_MAX || elmt_size > LONG_MAX) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "result overflow") + start_disp = (MPI_Aint)d[i].start * (MPI_Aint)offset[i] * (MPI_Aint)elmt_size; + + if(max_xtent[i] > LONG_MAX) + HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "max_xtent overflow") + new_extent = (MPI_Aint)elmt_size * (MPI_Aint)max_xtent[i]; if(MPI_SUCCESS != (mpi_code = MPI_Type_get_extent(outer_type, &lb, &extent_len))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_get_extent failed", mpi_code) @@ -1161,7 +1172,7 @@ H5S__obtain_datatype(H5S_hyper_span_info_t *spans, const hsize_t *down, nelmts = (span->high - span->low) + 1; /* Store displacement & block length */ - disp[outercount] = (MPI_Aint)elmt_size * span->low; + disp[outercount] = (MPI_Aint)elmt_size * (MPI_Aint)span->low; H5_CHECK_OVERFLOW(nelmts, hsize_t, int) blocklen[outercount] = (int)nelmts; @@ -1183,7 +1194,7 @@ H5S__obtain_datatype(H5S_hyper_span_info_t *spans, const hsize_t *down, /* create the block type from elmt_type while checking the 32 bit int limit */ if((hsize_t)(blocklen[u]) > bigio_count) { - if(H5_mpio_create_large_type(blocklen[u], 0, *elmt_type, &temp_type) < 0) + if(H5_mpio_create_large_type((hsize_t)blocklen[u], 0, *elmt_type, &temp_type) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large element datatype in span_hyper selection") } /* end if */ else @@ -1219,7 +1230,7 @@ H5S__obtain_datatype(H5S_hyper_span_info_t *spans, const hsize_t *down, HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate array of inner MPI datatypes") /* Calculate the total bytes of the lower dimension */ - stride = (*down) * elmt_size; + stride = (MPI_Aint)(*down) * (MPI_Aint)elmt_size; /* Loop over span nodes */ outercount = 0; @@ -1251,7 +1262,7 @@ H5S__obtain_datatype(H5S_hyper_span_info_t *spans, const hsize_t *down, /* Displacement should be in byte and should have dimension information */ /* First using MPI Type vector to build derived data type for this span only */ /* Need to calculate the disp in byte for this dimension. */ - disp[outercount] = span->low * stride; + disp[outercount] = (MPI_Aint)span->low * stride; blocklen[outercount] = 1; /* Generate MPI datatype for next dimension down */ diff --git a/src/H5Sselect.c b/src/H5Sselect.c index 9814e38..13233ce 100644 --- a/src/H5Sselect.c +++ b/src/H5Sselect.c @@ -2601,9 +2601,9 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, { H5S_t *new_space = NULL; /* New dataspace constructed */ H5S_t *tmp_src_intersect_space = NULL; /* Temporary SIS converted from points->hyperslabs */ - H5S_sel_iter_t ss_iter; /* Selection iterator for src_space */ + H5S_sel_iter_t *ss_iter = NULL; /* Selection iterator for src_space */ hbool_t ss_iter_init = FALSE; /* Whether ss_iter has been initialized */ - H5S_sel_iter_t ds_iter; /* Selection iterator for dst_space */ + H5S_sel_iter_t *ds_iter = NULL; /* Selection iterator for dst_space */ hbool_t ds_iter_init = FALSE; /* Whether ds_iter has been initialized */ herr_t ret_value = SUCCEED; /* Return value */ @@ -2617,6 +2617,11 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, HDassert(H5S_GET_SELECT_NPOINTS(src_space) == H5S_GET_SELECT_NPOINTS(dst_space)); HDassert(H5S_GET_EXTENT_NDIMS(src_space) == H5S_GET_EXTENT_NDIMS(src_intersect_space)); + if(NULL == (ss_iter = H5FL_CALLOC(H5S_sel_iter_t))) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate selection iterator") + if(NULL == (ds_iter = H5FL_CALLOC(H5S_sel_iter_t))) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate selection iterator") + /* Create new space, using dst extent. Start with "all" selection. */ if(NULL == (new_space = H5S_create(H5S_SIMPLE))) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "unable to create output dataspace") @@ -2717,20 +2722,20 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") /* Initialize iterators */ - if(H5S_select_iter_init(&ss_iter, src_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0) + if(H5S_select_iter_init(ss_iter, src_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize source space selection iterator") ss_iter_init = TRUE; - if(H5S_select_iter_init(&ds_iter, dst_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0) + if(H5S_select_iter_init(ds_iter, dst_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize destination space selection iterator") ds_iter_init = TRUE; /* Iterate over points */ do { - HDassert(ss_iter.elmt_left > 0); - HDassert(ss_iter.elmt_left > 0); + HDassert(ss_iter->elmt_left > 0); + HDassert(ss_iter->elmt_left > 0); /* Get SS coords */ - if(H5S_SELECT_ITER_COORDS(&ss_iter, coords) < 0) + if(H5S_SELECT_ITER_COORDS(ss_iter, coords) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get source selection coordinates") /* Check for intersection */ @@ -2740,7 +2745,7 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, /* Add point if it intersects */ if(intersect) { /* Get DS coords */ - if(H5S_SELECT_ITER_COORDS(&ds_iter, coords) < 0) + if(H5S_SELECT_ITER_COORDS(ds_iter, coords) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get destination selection coordinates") /* Add point to new_space */ @@ -2749,14 +2754,14 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, } /* end if */ /* Advance iterators */ - if(H5S_SELECT_ITER_NEXT(&ss_iter, 1) < 0) + if(H5S_SELECT_ITER_NEXT(ss_iter, 1) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne source selection iterator") - ss_iter.elmt_left--; - if(H5S_SELECT_ITER_NEXT(&ds_iter, 1) < 0) + ss_iter->elmt_left--; + if(H5S_SELECT_ITER_NEXT(ds_iter, 1) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne destination selection iterator") - ds_iter.elmt_left--; - } while(ss_iter.elmt_left > 0); - HDassert(H5S_SELECT_ITER_NELMTS(&ds_iter) == 0); + ds_iter->elmt_left--; + } while(ss_iter->elmt_left > 0); + HDassert(H5S_SELECT_ITER_NELMTS(ds_iter) == 0); } /* end if */ else { HDassert(H5S_GET_SELECT_TYPE(src_space) != H5S_SEL_NONE); @@ -2783,11 +2788,14 @@ done: /* General cleanup */ if(tmp_src_intersect_space && H5S_close(tmp_src_intersect_space) < 0) HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release temporary dataspace") - if(ss_iter_init && H5S_SELECT_ITER_RELEASE(&ss_iter) < 0) + if(ss_iter_init && H5S_SELECT_ITER_RELEASE(ss_iter) < 0) HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release source selection iterator") - if(ds_iter_init && H5S_SELECT_ITER_RELEASE(&ds_iter) < 0) + if(ds_iter_init && H5S_SELECT_ITER_RELEASE(ds_iter) < 0) HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release destination selection iterator") + ss_iter = H5FL_FREE(H5S_sel_iter_t, ss_iter); + ds_iter = H5FL_FREE(H5S_sel_iter_t, ds_iter); + FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_select_project_intersection() */ diff --git a/src/H5Tcommit.c b/src/H5Tcommit.c index 5c848c2..1b922d5 100644 --- a/src/H5Tcommit.c +++ b/src/H5Tcommit.c @@ -106,7 +106,7 @@ H5Tcommit2(hid_t loc_id, const char *name, hid_t type_id, hid_t lcpl_id, void *data = NULL; /* VOL-managed datatype data */ H5VL_object_t *new_obj = NULL; /* VOL object that holds the datatype object and the VOL info */ H5T_t *dt = NULL; /* High level datatype object that wraps the VOL object */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -273,7 +273,7 @@ H5Tcommit_anon(hid_t loc_id, hid_t type_id, hid_t tcpl_id, hid_t tapl_id) void *dt = NULL; /* datatype object created by VOL connector */ H5VL_object_t *new_obj = NULL; /* VOL object that holds the datatype object and the VOL info */ H5T_t *type = NULL; /* Datatype created */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -568,8 +568,8 @@ done: hid_t H5Topen2(hid_t loc_id, const char *name, hid_t tapl_id) { - void *dt = NULL; /* datatype token created by VOL connector */ - H5VL_object_t *vol_obj = NULL; /* object token of loc_id */ + void *dt = NULL; /* datatype object created by VOL connector */ + H5VL_object_t *vol_obj = NULL; /* object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -1096,7 +1096,7 @@ H5T_construct_datatype(H5VL_object_t *vol_obj) { ssize_t nalloc; void *buf = NULL; - H5T_t *dt = NULL; /* datatype token from VOL connector */ + H5T_t *dt = NULL; /* datatype object from VOL connector */ H5T_t *ret_value = NULL; FUNC_ENTER_NOAPI(NULL) diff --git a/src/H5Tconv.c b/src/H5Tconv.c index 8a0c562..29fd582 100644 --- a/src/H5Tconv.c +++ b/src/H5Tconv.c @@ -1848,7 +1848,7 @@ H5T_conv_struct_free(H5T_conv_struct_t *priv) for(i = 0; i < priv->src_nmembs; i++) if(src2dst[i] >= 0) { - int status; + int H5_ATTR_NDEBUG_UNUSED status; status = H5I_dec_ref(src_memb_id[i]); HDassert(status >= 0); diff --git a/src/H5Tdeprec.c b/src/H5Tdeprec.c index 9998317..2c98dc0 100644 --- a/src/H5Tdeprec.c +++ b/src/H5Tdeprec.c @@ -110,7 +110,7 @@ H5Tcommit1(hid_t loc_id, const char *name, hid_t type_id) void *data = NULL; /* VOL-managed datatype data */ H5VL_object_t *new_obj = NULL; /* VOL object that holds the datatype object and the VOL info */ H5T_t *dt = NULL; /* High level datatype object that wraps the VOL object */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; herr_t ret_value = SUCCEED; /* Return value */ @@ -175,8 +175,8 @@ done: hid_t H5Topen1(hid_t loc_id, const char *name) { - void *dt = NULL; /* Datatype token created by VOL connector */ - H5VL_object_t *vol_obj = NULL; /* Object token of loc_id */ + void *dt = NULL; /* Datatype object created by VOL connector */ + H5VL_object_t *vol_obj = NULL; /* Object of loc_id */ H5VL_loc_params_t loc_params; hid_t ret_value = H5I_INVALID_HID; /* Return value */ diff --git a/src/H5Tref.c b/src/H5Tref.c index f31fecf..f97b78a 100644 --- a/src/H5Tref.c +++ b/src/H5Tref.c @@ -46,7 +46,7 @@ /* For region compatibility support */ struct H5Tref_dsetreg { - H5VL_token_t token; /* Object token */ + H5O_token_t token; /* Object token */ H5S_t *space; /* Dataspace */ }; @@ -578,7 +578,7 @@ H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size { size_t token_size = H5F_SIZEOF_ADDR(src_f); - if(H5R__create_object((const H5VL_token_t *)src_buf, token_size, dst_ref) < 0) + if(H5R__create_object((const H5O_token_t *)src_buf, token_size, dst_ref) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCREATE, FAIL, "unable to create object reference") } break; @@ -622,8 +622,9 @@ H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size if((file_id = H5F_get_file_id(src_file, H5I_FILE, FALSE)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") - /* Attach loc ID to reference and hold reference to it */ - if(H5R__set_loc_id(dst_ref, file_id, TRUE) < 0) + /* Attach loc ID to reference and hold reference to it, this is a + * user exposed reference so set app_ref to TRUE. */ + if(H5R__set_loc_id(dst_ref, file_id, TRUE, TRUE) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTSET, FAIL, "unable to attach location id to reference") } /* end if */ @@ -783,7 +784,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5T__ref_disk_read(H5VL_object_t *src_file, const void *src_buf, size_t src_size, +H5T__ref_disk_read(H5VL_object_t *src_file, const void *src_buf, size_t H5_ATTR_NDEBUG_UNUSED src_size, H5VL_object_t H5_ATTR_UNUSED *dst_file, void *dst_buf, size_t dst_size) { const uint8_t *p = (const uint8_t *)src_buf; @@ -1023,7 +1024,7 @@ H5T__ref_obj_disk_read(H5VL_object_t *src_file, const void *src_buf, size_t src_ /* Get object address */ if(H5R__decode_token_obj_compat((const unsigned char *)src_buf, &src_size, - (H5VL_token_t *)dst_buf, H5F_SIZEOF_ADDR(src_f)) < 0) + (H5O_token_t *)dst_buf, H5F_SIZEOF_ADDR(src_f)) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDECODE, FAIL, "unable to get object address") done: @@ -1100,7 +1101,11 @@ H5T__ref_dsetreg_disk_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, { size_t ret_value = sizeof(struct H5Tref_dsetreg); +#ifndef NDEBUG FUNC_ENTER_STATIC +#else + FUNC_ENTER_STATIC_NOERR +#endif HDassert(src_buf); @@ -1124,7 +1129,9 @@ H5T__ref_dsetreg_disk_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, } #endif /* NDEBUG */ +#ifndef NDEBUG done: +#endif FUNC_LEAVE_NOAPI(ret_value) } /* end H5T__ref_dsetreg_disk_getsize() */ @@ -249,6 +249,38 @@ done: /*------------------------------------------------------------------------- * Function: H5VLget_connector_id * + * Purpose: Retrieves the VOL connector ID for a given object ID. + * + * Return: A valid VOL connector ID. This ID will need to be closed + * using H5VLclose(). + * + * H5I_INVALID_HID on error. + * + * Programmer: Dana Robinson + * June 17, 2017 + * + *------------------------------------------------------------------------- + */ +hid_t +H5VLget_connector_id(hid_t obj_id) +{ + hid_t ret_value = H5I_INVALID_HID; /* Return value */ + + FUNC_ENTER_API(H5I_INVALID_HID) + H5TRACE1("i", "i", obj_id); + + /* Get connector ID */ + if((ret_value = H5VL__get_connector_id(obj_id, TRUE)) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, H5I_INVALID_HID, "can't get VOL id") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5VLget_connector_id() */ + + +/*------------------------------------------------------------------------- + * Function: H5VLget_connector_id_by_name + * * Purpose: Retrieves the ID for a registered VOL connector. * * Return: A valid VOL connector ID if a connector by that name has @@ -264,7 +296,7 @@ done: *------------------------------------------------------------------------- */ hid_t -H5VLget_connector_id(const char *name) +H5VLget_connector_id_by_name(const char *name) { hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -272,12 +304,12 @@ H5VLget_connector_id(const char *name) H5TRACE1("i", "*s", name); /* Get connector ID with this name */ - if((ret_value = H5VL__get_connector_id(name, TRUE)) < 0) + if((ret_value = H5VL__get_connector_id_by_name(name, TRUE)) < 0) HGOTO_ERROR(H5E_VOL, H5E_CANTGET, H5I_INVALID_HID, "can't get VOL id") done: FUNC_LEAVE_API(ret_value) -} /* end H5VLget_connector_id() */ +} /* end H5VLget_connector_id_by_name() */ /*------------------------------------------------------------------------- @@ -411,7 +443,7 @@ H5VLunregister_connector(hid_t vol_id) HGOTO_ERROR(H5E_VOL, H5E_BADTYPE, FAIL, "not a VOL connector ID") /* For the time being, we disallow unregistering the native VOL connector */ - if(H5I_INVALID_HID == (native_id = H5VL__get_connector_id(H5VL_NATIVE_NAME, FALSE))) + if(H5I_INVALID_HID == (native_id = H5VL__get_connector_id_by_name(H5VL_NATIVE_NAME, FALSE))) HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "unable to find the native VOL connector ID") if(vol_id == native_id) HGOTO_ERROR(H5E_VOL, H5E_BADVALUE, FAIL, "unregistering the native VOL connector is not allowed") diff --git a/src/H5VLcallback.c b/src/H5VLcallback.c index 30cbae1..e4ebb95 100644 --- a/src/H5VLcallback.c +++ b/src/H5VLcallback.c @@ -189,6 +189,12 @@ static herr_t H5VL__blob_specific(void *obj, const H5VL_class_t *cls, void *blob_id, H5VL_blob_specific_t specific_type, va_list arguments); static herr_t H5VL__blob_optional(void *obj, const H5VL_class_t *cls, void *blob_id, H5VL_blob_optional_t opt_type, va_list arguments); +static herr_t H5VL__token_cmp(void *obj, const H5VL_class_t *cls, + const H5O_token_t *token1, const H5O_token_t *token2, int *cmp_value); +static herr_t H5VL__token_to_str(void *obj, H5I_type_t obj_type, const H5VL_class_t *cls, + const H5O_token_t *token, char **token_str); +static herr_t H5VL__token_from_str(void *obj, H5I_type_t obj_type, const H5VL_class_t *cls, + const char *token_str, H5O_token_t *token); static herr_t H5VL__optional(void *obj, const H5VL_class_t *cls, int op_type, hid_t dxpl_id, void **req, va_list arguments); @@ -4713,7 +4719,7 @@ H5VL_link_create(H5VL_link_create_type_t create_type, const H5VL_object_t *vol_o const H5VL_loc_params_t *loc_params, hid_t lcpl_id, hid_t lapl_id, hid_t dxpl_id, void **req, ...) { - H5VL_object_t tmp_vol_obj; /* Temporary object token of */ + H5VL_object_t tmp_vol_obj; /* Temporary object */ va_list arguments; /* Argument list passed from the API call */ hbool_t arg_started = FALSE; /* Whether the va_list has been started */ hbool_t vol_wrapper_set = FALSE; /* Whether the VOL object wrapping context was set up */ @@ -7280,6 +7286,383 @@ done: /*------------------------------------------------------------------------- + * Function: H5VL__token_cmp + * + * Purpose: Compares two VOL connector object tokens. Sets *cmp_value + * to positive if token1 is greater than token2, negative if + * token2 is greater than token1 and zero if token1 and + * token2 are equal. + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +static herr_t +H5VL__token_cmp(void *obj, const H5VL_class_t *cls, + const H5O_token_t *token1, const H5O_token_t *token2, int *cmp_value) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(obj); + HDassert(cls); + HDassert(cmp_value); + + /* Take care of cases where one or both pointers is NULL */ + if(token1 == NULL && token2 != NULL) + *cmp_value = -1; + else if(token1 != NULL && token2 == NULL) + *cmp_value = 1; + else if(token1 == NULL && token2 == NULL) + *cmp_value = 0; + else { + /* Use the class's token comparison routine to compare the tokens, + * if there is a callback, otherwise just compare the tokens as + * memory buffers. + */ + if(cls->token_cls.cmp) { + if((cls->token_cls.cmp)(obj, token1, token2, cmp_value) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTCOMPARE, FAIL, "can't compare object tokens") + } /* end if */ + else + *cmp_value = HDmemcmp(token1, token2, sizeof(H5O_token_t)); + } /* end else */ + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL__token_cmp() */ + + +/*------------------------------------------------------------------------- + * Function: H5VL_token_cmp + * + * Purpose: Compares two VOL connector object tokens. Sets *cmp_value + * to positive if token1 is greater than token2, negative if + * token2 is greater than token1 and zero if token1 and + * token2 are equal. + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +herr_t +H5VL_token_cmp(const H5VL_object_t *vol_obj, const H5O_token_t *token1, + const H5O_token_t *token2, int *cmp_value) +{ + hbool_t vol_wrapper_set = FALSE; /* Whether the VOL object wrapping context was set up */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(vol_obj); + HDassert(cmp_value); + + /* Set wrapper info in API context */ + if(H5VL_set_vol_wrapper(vol_obj) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTSET, FAIL, "can't set VOL wrapper info") + vol_wrapper_set = TRUE; + + /* Call the corresponding internal VOL routine */ + if((ret_value = H5VL__token_cmp(vol_obj->data, vol_obj->connector->cls, token1, token2, cmp_value)) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTCOMPARE, FAIL, "token compare failed") + +done: + /* Reset object wrapping info in API context */ + if(vol_wrapper_set && H5VL_reset_vol_wrapper() < 0) + HDONE_ERROR(H5E_VOL, H5E_CANTRESET, FAIL, "can't reset VOL wrapper info") + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL_token_cmp() */ + + +/*--------------------------------------------------------------------------- + * Function: H5VLtoken_cmp + * + * Purpose: Compares two VOL connector object tokens + * + * Note: Both object tokens must be from the same VOL connector class + * + * Return: Success: Non-negative, with *cmp_value set to positive if + * token1 is greater than token2, negative if token2 + * is greater than token1 and zero if token1 and + * token2 are equal. + * Failure: Negative + * + *--------------------------------------------------------------------------- + */ +herr_t +H5VLtoken_cmp(void *obj, hid_t connector_id, const H5O_token_t *token1, + const H5O_token_t *token2, int *cmp_value) +{ + H5VL_class_t *cls; /* VOL connector's class struct */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API_NOINIT + H5TRACE5("e", "*xi*k*k*Is", obj, connector_id, token1, token2, cmp_value); + + /* Check args and get class pointer */ + if(NULL == obj) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid object") + if(NULL == (cls = (H5VL_class_t *)H5I_object_verify(connector_id, H5I_VOL))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a VOL connector ID") + if(NULL == cmp_value) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid cmp_value pointer") + + /* Call the corresponding internal VOL routine */ + if(H5VL__token_cmp(obj, cls, token1, token2, cmp_value) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTCOMPARE, FAIL, "object token comparison failed") + +done: + FUNC_LEAVE_API_NOINIT(ret_value) +} /* end H5VLtoken_cmp() */ + + +/*------------------------------------------------------------------------- + * Function: H5VL__token_to_str + * + * Purpose: Serialize a connector's object token into a string + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +static herr_t +H5VL__token_to_str(void *obj, H5I_type_t obj_type, const H5VL_class_t *cls, + const H5O_token_t *token, char **token_str) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(obj); + HDassert(cls); + HDassert(token); + HDassert(token_str); + + /* Use the class's token serialization routine on the token if there is a + * callback, otherwise just set the token_str to NULL. + */ + if(cls->token_cls.to_str) { + if((cls->token_cls.to_str)(obj, obj_type, token, token_str) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTSERIALIZE, FAIL, "can't serialize object token") + } /* end if */ + else + *token_str = NULL; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL__token_to_str() */ + + +/*------------------------------------------------------------------------- + * Function: H5VL_token_to_str + * + * Purpose: Serialize a connector's object token into a string + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +herr_t +H5VL_token_to_str(const H5VL_object_t *vol_obj, H5I_type_t obj_type, + const H5O_token_t *token, char **token_str) +{ + hbool_t vol_wrapper_set = FALSE; /* Whether the VOL object wrapping context was set up */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(vol_obj); + HDassert(token); + HDassert(token_str); + + /* Set wrapper info in API context */ + if(H5VL_set_vol_wrapper(vol_obj) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTSET, FAIL, "can't set VOL wrapper info") + vol_wrapper_set = TRUE; + + /* Call the corresponding internal VOL routine */ + if((ret_value = H5VL__token_to_str(vol_obj->data, obj_type, vol_obj->connector->cls, token, token_str)) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTSERIALIZE, FAIL, "token serialization failed") + +done: + /* Reset object wrapping info in API context */ + if(vol_wrapper_set && H5VL_reset_vol_wrapper() < 0) + HDONE_ERROR(H5E_VOL, H5E_CANTRESET, FAIL, "can't reset VOL wrapper info") + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL_token_to_str() */ + + +/*--------------------------------------------------------------------------- + * Function: H5VLtoken_to_str + * + * Purpose: Serialize a connector's object token into a string + * + * Return: Success: Non-negative + * Failure: Negative + * + *--------------------------------------------------------------------------- + */ +herr_t +H5VLtoken_to_str(void *obj, H5I_type_t obj_type, hid_t connector_id, + const H5O_token_t *token, char **token_str) +{ + H5VL_class_t *cls; /* VOL connector's class struct */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API_NOINIT + H5TRACE5("e", "*xIti*k**s", obj, obj_type, connector_id, token, token_str); + + /* Check args and get class pointer */ + if(NULL == obj) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid object") + if(NULL == (cls = (H5VL_class_t *)H5I_object_verify(connector_id, H5I_VOL))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a VOL connector ID") + if(NULL == token) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid token pointer") + if(NULL == token_str) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid token_str pointer") + + /* Call the corresponding internal VOL routine */ + if(H5VL__token_to_str(obj, obj_type, cls, token, token_str) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTSERIALIZE, FAIL, "object token to string failed") + +done: + FUNC_LEAVE_API_NOINIT(ret_value) +} /* end H5VLtoken_to_str() */ + + +/*------------------------------------------------------------------------- + * Function: H5VL__token_from_str + * + * Purpose: Deserialize a string into a connector object token + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +static herr_t +H5VL__token_from_str(void *obj, H5I_type_t obj_type, const H5VL_class_t *cls, + const char *token_str, H5O_token_t *token) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Sanity checks */ + HDassert(obj); + HDassert(cls); + HDassert(token_str); + HDassert(token); + + /* Use the class's token deserialization routine on the token if there is a + * callback, otherwise just set the token to H5_TOKEN_UNDEF. + */ + if(cls->token_cls.from_str) { + if((cls->token_cls.from_str)(obj, obj_type, token_str, token) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token string") + } /* end if */ + else + *token = H5O_TOKEN_UNDEF; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL__token_from_str() */ + + +/*------------------------------------------------------------------------- + * Function: H5VL_token_from_str + * + * Purpose: Deserialize a string into a connector object token + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +herr_t +H5VL_token_from_str(const H5VL_object_t *vol_obj, H5I_type_t obj_type, + const char *token_str, H5O_token_t *token) +{ + hbool_t vol_wrapper_set = FALSE; /* Whether the VOL object wrapping context was set up */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity checks */ + HDassert(vol_obj); + HDassert(token); + HDassert(token_str); + + /* Set wrapper info in API context */ + if(H5VL_set_vol_wrapper(vol_obj) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTSET, FAIL, "can't set VOL wrapper info") + vol_wrapper_set = TRUE; + + /* Call the corresponding internal VOL routine */ + if((ret_value = H5VL__token_from_str(vol_obj->data, obj_type, vol_obj->connector->cls, token_str, token)) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTUNSERIALIZE, FAIL, "token deserialization failed") + +done: + /* Reset object wrapping info in API context */ + if(vol_wrapper_set && H5VL_reset_vol_wrapper() < 0) + HDONE_ERROR(H5E_VOL, H5E_CANTRESET, FAIL, "can't reset VOL wrapper info") + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL_token_from_str() */ + + +/*--------------------------------------------------------------------------- + * Function: H5VLtoken_from_str + * + * Purpose: Deserialize a string into a connector object token + * + * Return: Success: Non-negative + * Failure: Negative + * + *--------------------------------------------------------------------------- + */ +herr_t +H5VLtoken_from_str(void *obj, H5I_type_t obj_type, hid_t connector_id, + const char *token_str, H5O_token_t *token) +{ + H5VL_class_t *cls; /* VOL connector's class struct */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API_NOINIT + H5TRACE5("e", "*xIti*s*k", obj, obj_type, connector_id, token_str, token); + + /* Check args and get class pointer */ + if(NULL == obj) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid object") + if(NULL == (cls = (H5VL_class_t *)H5I_object_verify(connector_id, H5I_VOL))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a VOL connector ID") + if(NULL == token) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid token pointer") + if(NULL == token_str) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid token_str pointer") + + /* Call the corresponding internal VOL routine */ + if(H5VL__token_from_str(obj, obj_type, cls, token_str, token) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTUNSERIALIZE, FAIL, "object token from string failed") + +done: + FUNC_LEAVE_API_NOINIT(ret_value) +} /* end H5VLtoken_from_str() */ + + +/*------------------------------------------------------------------------- * Function: H5VL__optional * * Purpose: Optional operation specific to connectors. diff --git a/src/H5VLconnector.h b/src/H5VLconnector.h index 4ce6bb1..9bc3a7b 100644 --- a/src/H5VLconnector.h +++ b/src/H5VLconnector.h @@ -43,8 +43,6 @@ /* The maximum size allowed for blobs */ #define H5VL_MAX_BLOB_ID_SIZE (16) /* Allow for 128-bits blob IDs */ -/* The maximum size allowed for tokens */ -#define H5VL_MAX_TOKEN_SIZE (16) /* Allow for 128-bits tokens */ /*******************/ /* Public Typedefs */ @@ -64,15 +62,10 @@ typedef enum H5VL_subclass_t { H5VL_SUBCLS_LINK, /* 'Link' subclass */ H5VL_SUBCLS_OBJECT, /* 'Object' subclass */ H5VL_SUBCLS_REQUEST, /* 'Request' subclass */ - H5VL_SUBCLS_BLOB /* 'Blob' subclass */ + H5VL_SUBCLS_BLOB, /* 'Blob' subclass */ + H5VL_SUBCLS_TOKEN /* 'Token' subclass */ } H5VL_subclass_t; -/* type for tokens. Token are unique and permanent identifiers that are - * used to reference HDF5 objects. */ -typedef struct { - char __data[H5VL_MAX_TOKEN_SIZE]; -} H5VL_token_t; - /* types for attribute GET callback */ typedef enum H5VL_attr_get_t { H5VL_ATTR_GET_ACPL, /* creation property list */ @@ -201,7 +194,8 @@ typedef int H5VL_link_optional_t; typedef enum H5VL_object_get_t { H5VL_OBJECT_GET_FILE, /* object file */ H5VL_OBJECT_GET_NAME, /* object name */ - H5VL_OBJECT_GET_TYPE /* object type */ + H5VL_OBJECT_GET_TYPE, /* object type */ + H5VL_OBJECT_GET_INFO /* H5Oget_info(_by_idx|name)3 */ } H5VL_object_get_t; /* types for object SPECIFIC callback */ @@ -262,7 +256,7 @@ typedef struct H5VL_loc_by_idx { } H5VL_loc_by_idx_t; typedef struct H5VL_loc_by_token { - H5VL_token_t *token; + H5O_token_t *token; } H5VL_loc_by_token_t; /* Structure to hold parameters for object locations. @@ -459,6 +453,13 @@ typedef struct H5VL_blob_class_t { herr_t (*optional)(void *obj, void *blob_id, H5VL_blob_optional_t opt_type, va_list arguments); } H5VL_blob_class_t; +/* Object token routines */ +typedef struct H5VL_token_class_t { + herr_t (*cmp)(void *obj, const H5O_token_t *token1, const H5O_token_t *token2, int *cmp_value); + herr_t (*to_str)(void *obj, H5I_type_t obj_type, const H5O_token_t *token, char **token_str); + herr_t (*from_str)(void *obj, H5I_type_t obj_type, const char *token_str, H5O_token_t *token); +} H5VL_token_class_t; + /* Class information for each VOL connector */ typedef struct H5VL_class_t { /* Overall connector fields & callbacks */ @@ -486,6 +487,7 @@ typedef struct H5VL_class_t { H5VL_introspect_class_t introspect_cls; /* Container/connector introspection class callbacks */ H5VL_request_class_t request_cls; /* Asynchronous request class callbacks */ H5VL_blob_class_t blob_cls; /* 'Blob' class callbacks */ + H5VL_token_class_t token_cls; /* VOL connector object token class callbacks */ /* Catch-all */ herr_t (*optional)(void *obj, int op_type, hid_t dxpl_id, void **req, va_list arguments); /* Optional callback */ diff --git a/src/H5VLconnector_passthru.h b/src/H5VLconnector_passthru.h index 5a937bf..b04f5eb 100644 --- a/src/H5VLconnector_passthru.h +++ b/src/H5VLconnector_passthru.h @@ -170,6 +170,11 @@ H5_DLL herr_t H5VLblob_get(void *obj, hid_t connector_id, const void *blob_id, v H5_DLL herr_t H5VLblob_specific(void *obj, hid_t connector_id, void *blob_id, H5VL_blob_specific_t specific_type, va_list arguments); H5_DLL herr_t H5VLblob_optional(void *obj, hid_t connector_id, void *blob_id, H5VL_blob_optional_t opt_type, va_list arguments); +/* Public wrappers for token callbacks */ +H5_DLL herr_t H5VLtoken_cmp(void *obj, hid_t connector_id, const H5O_token_t *token1, const H5O_token_t *token2, int *cmp_value); +H5_DLL herr_t H5VLtoken_to_str(void *obj, H5I_type_t obj_type, hid_t connector_id, const H5O_token_t *token, char **token_str); +H5_DLL herr_t H5VLtoken_from_str(void *obj, H5I_type_t obj_type, hid_t connector_id, const char *token_str, H5O_token_t *token); + /* Public wrappers for generic 'optional' callback */ H5_DLL herr_t H5VLoptional(void *obj, hid_t connector_id, int op_type, hid_t dxpl_id, void **req, va_list arguments); diff --git a/src/H5VLint.c b/src/H5VLint.c index 242b1c7..9038d38 100644 --- a/src/H5VLint.c +++ b/src/H5VLint.c @@ -425,7 +425,7 @@ H5VL__set_def_conn(void) HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't check if VOL connector already registered") else if(connector_is_registered) { /* Retrieve the ID of the already-registered VOL connector */ - if((connector_id = H5VL__get_connector_id(tok, FALSE)) < 0) + if((connector_id = H5VL__get_connector_id_by_name(tok, FALSE)) < 0) HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get VOL connector ID") } /* end else-if */ else { @@ -1366,6 +1366,41 @@ done: /*------------------------------------------------------------------------- * Function: H5VL__get_connector_id * + * Purpose: Retrieves the VOL connector ID for a given object ID. + * + * Return: Positive if the VOL class has been registered + * Negative on error (if the class is not a valid class or not registered) + * + * Programmer: Dana Robinson + * June 17, 2017 + * + *------------------------------------------------------------------------- + */ +hid_t +H5VL__get_connector_id(hid_t obj_id, hbool_t is_api) +{ + H5VL_object_t *vol_obj = NULL; + hid_t ret_value = H5I_INVALID_HID; /* Return value */ + + FUNC_ENTER_PACKAGE + + /* Get the underlying VOL object for the object ID */ + if(NULL == (vol_obj = H5VL_vol_object(obj_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier") + + /* Return the VOL object's VOL class ID */ + ret_value = vol_obj->connector->id; + if(H5I_inc_ref(ret_value, is_api) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTINC, H5I_INVALID_HID, "unable to increment ref count on VOL connector") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL__get_connector_id() */ + + +/*------------------------------------------------------------------------- + * Function: H5VL__get_connector_id_by_name + * * Purpose: Retrieves the ID for a registered VOL connector. * * Return: Positive if the VOL class has been registered @@ -1377,7 +1412,7 @@ done: *------------------------------------------------------------------------- */ hid_t -H5VL__get_connector_id(const char *name, hbool_t is_api) +H5VL__get_connector_id_by_name(const char *name, hbool_t is_api) { hid_t ret_value = H5I_INVALID_HID; /* Return value */ @@ -1393,7 +1428,7 @@ H5VL__get_connector_id(const char *name, hbool_t is_api) done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5VL__get_connector_id() */ +} /* end H5VL__get_connector_id_by_name() */ /*------------------------------------------------------------------------- diff --git a/src/H5VLnative.c b/src/H5VLnative.c index dfa57ef..616ca60 100644 --- a/src/H5VLnative.c +++ b/src/H5VLnative.c @@ -16,9 +16,15 @@ */ #include "H5private.h" /* Generic Functions */ +#include "H5Aprivate.h" /* Attributes */ +#include "H5Dprivate.h" /* Datasets */ #include "H5Eprivate.h" /* Error handling */ +#include "H5Fprivate.h" /* Files */ +#include "H5Gprivate.h" /* Groups */ #include "H5Iprivate.h" /* IDs */ +#include "H5Oprivate.h" /* Object headers */ #include "H5Pprivate.h" /* Property lists */ +#include "H5Tprivate.h" /* Datatypes */ #include "H5VLprivate.h" /* Virtual Object Layer */ #include "H5VLnative_private.h" /* Native VOL connector */ @@ -130,6 +136,11 @@ static const H5VL_class_t H5VL_native_cls_g = { H5VL__native_blob_specific, /* specific */ NULL /* optional */ }, + { /* token_cls */ + H5VL__native_token_cmp, /* cmp */ + H5VL__native_token_to_str, /* to_str */ + H5VL__native_str_to_token /* from_str */ + }, NULL /* optional */ }; @@ -212,3 +223,337 @@ H5VL__native_introspect_get_conn_cls(void H5_ATTR_UNUSED *obj, FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5VL__native_introspect_get_conn_cls() */ + +/*------------------------------------------------------------------------- + * Function: H5VL_native_get_file_addr_len + * + * Purpose: Convenience function to get a file's address length from a + * location ID. Useful when you have to encode/decode addresses + * to/from tokens. + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +herr_t +H5VL_native_get_file_addr_len(hid_t loc_id, size_t *addr_len) +{ + H5I_type_t vol_obj_type = H5I_BADID; /* Object type of loc_id */ + void *vol_obj = NULL; /* VOL Object of loc_id */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* check arguments */ + HDassert(addr_len); + + /* Get object type */ + if((vol_obj_type = H5I_get_type(loc_id)) < 0) + HGOTO_ERROR(H5E_VOL, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Retrieve underlying VOL object */ + if(NULL == (vol_obj = H5VL_object(loc_id))) + HGOTO_ERROR(H5E_VOL, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Retrieve file address length */ + if(H5VL__native_get_file_addr_len(vol_obj, vol_obj_type, addr_len) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get file address length") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL_native_get_file_addr_len() */ + + +/*------------------------------------------------------------------------- + * Function: H5VL__native_get_file_addr_len + * + * Purpose: Convenience function to get a file's address length from a + * VOL object. Useful when you have to encode/decode addresses + * to/from tokens. + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +herr_t +H5VL__native_get_file_addr_len(void *obj, H5I_type_t obj_type, size_t *addr_len) +{ + H5F_t *file = NULL; /* File stuct pointer */ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* check arguments */ + HDassert(obj); + HDassert(addr_len); + + /* Retrieve file from the VOL object */ + if(H5VL_native_get_file_struct(obj, obj_type, &file) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "couldn't get file from VOL object") + + /* Get the length of an address in this file */ + *addr_len = H5F_SIZEOF_ADDR(file); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL__native_get_file_addr_len() */ + + +/*------------------------------------------------------------------------- + * Function: H5VLnative_addr_to_token + * + * Purpose: Converts a native VOL haddr_t address to an abstract VOL token. + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +herr_t +H5VLnative_addr_to_token(hid_t loc_id, haddr_t addr, H5O_token_t *token) +{ + H5I_type_t vol_obj_type = H5I_BADID; /* Object type of loc_id */ + void *vol_obj = NULL; /* VOL Object of loc_id */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE3("e", "ia*k", loc_id, addr, token); + + /* Check args */ + if(NULL == token) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "token pointer can't be NULL") + + /* Get object type */ + if((vol_obj_type = H5I_get_type(loc_id)) < 0) + HGOTO_ERROR(H5E_VOL, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Retrieve underlying VOL object */ + if(NULL == (vol_obj = H5VL_object(loc_id))) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get underlying VOL object") + +#ifndef NDEBUG + { + H5VL_object_t *vol_obj_container; + hbool_t is_native_vol_obj; + + /* Get the location object */ + if(NULL == (vol_obj_container = (H5VL_object_t *)H5I_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Make sure that the VOL object is a native connector object */ + if(H5VL_object_is_native(vol_obj_container, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't determine if VOL object is native connector object") + + HDassert(is_native_vol_obj && "not a native VOL connector object"); + } +#endif + + /* Convert the haddr_t to an object token */ + if(H5VL_native_addr_to_token(vol_obj, vol_obj_type, addr, token) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTSERIALIZE, FAIL, "couldn't serialize haddr_t into object token") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5VLnative_addr_to_token() */ + + +/*------------------------------------------------------------------------- + * Function: H5VL_native_addr_to_token + * + * Purpose: Converts a native VOL haddr_t address to an abstract VOL token. + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +herr_t +H5VL_native_addr_to_token(void *obj, H5I_type_t obj_type, haddr_t addr, H5O_token_t *token) +{ + uint8_t *p; + size_t addr_len = 0; /* Size of haddr_t */ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Check args */ + HDassert(obj); + HDassert(token); + + /* Get the length of an haddr_t in the file */ + if(H5VL__native_get_file_addr_len(obj, obj_type, &addr_len) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "couldn't get length of haddr_t from VOL object") + + /* Ensure that token is initialized */ + HDmemset(token, 0, sizeof(H5O_token_t)); + + /* Encode token */ + p = (uint8_t *)token; + H5F_addr_encode_len(addr_len, &p, addr); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL_native_addr_to_token() */ + + +/*------------------------------------------------------------------------- + * Function: H5VLnative_token_to_addr + * + * Purpose: Converts an abstract VOL token to a native VOL haddr_t address. + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +herr_t +H5VLnative_token_to_addr(hid_t loc_id, H5O_token_t token, haddr_t *addr) +{ + H5I_type_t vol_obj_type = H5I_BADID; /* Object type of loc_id */ + void *vol_obj = NULL; /* VOL Object of loc_id */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE3("e", "ik*a", loc_id, token, addr); + + /* Check args */ + if(NULL == addr) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "addr pointer can't be NULL") + + /* Get object type */ + if((vol_obj_type = H5I_get_type(loc_id)) < 0) + HGOTO_ERROR(H5E_VOL, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Retrieve underlying VOL object */ + if(NULL == (vol_obj = H5VL_object(loc_id))) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get underlying VOL object") + +#ifndef NDEBUG + { + H5VL_object_t *vol_obj_container; + hbool_t is_native_vol_obj; + + /* Get the location object */ + if(NULL == (vol_obj_container = (H5VL_object_t *)H5I_object(loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") + + /* Make sure that the VOL object is a native connector object */ + if(H5VL_object_is_native(vol_obj_container, &is_native_vol_obj) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't determine if VOL object is native connector object") + + HDassert(is_native_vol_obj && "not a native VOL connector object"); + } +#endif + + /* Convert the object token to an haddr_t */ + if(H5VL_native_token_to_addr(vol_obj, vol_obj_type, token, addr) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTUNSERIALIZE, FAIL, "couldn't deserialize object token into haddr_t") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5VLnative_token_to_addr() */ + + +/*------------------------------------------------------------------------- + * Function: H5VL_native_token_to_addr + * + * Purpose: Converts an abstract VOL token to a native VOL haddr_t address. + * + * Return: SUCCEED/FAIL + * + *------------------------------------------------------------------------- + */ +herr_t +H5VL_native_token_to_addr(void *obj, H5I_type_t obj_type, H5O_token_t token, haddr_t *addr) +{ + const uint8_t *p; + size_t addr_len = 0; /* Size of haddr_t */ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Check args */ + HDassert(obj); + HDassert(addr); + + /* Get the length of an haddr_t in the file */ + if(H5VL__native_get_file_addr_len(obj, obj_type, &addr_len) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "couldn't get length of haddr_t from VOL object") + + /* Decode token */ + p = (const uint8_t *)&token; + H5F_addr_decode_len(addr_len, &p, addr); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL_native_token_to_addr() */ + + +/*--------------------------------------------------------------------------- + * Function: H5VL_native_get_file_struct + * + * Purpose: Utility routine to get file struct for an object + * + * Returns: SUCCEED/FAIL + * + *--------------------------------------------------------------------------- + */ +herr_t +H5VL_native_get_file_struct(void *obj, H5I_type_t type, H5F_t **file) +{ + H5O_loc_t *oloc = NULL; /* Object location for ID */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL); + + *file = NULL; + + switch(type) { + case H5I_FILE: + *file = (H5F_t *)obj; + break; + + case H5I_GROUP: + oloc = H5G_oloc((H5G_t *)obj); + break; + + case H5I_DATATYPE: + oloc = H5T_oloc((H5T_t *)obj); + break; + + case H5I_DATASET: + oloc = H5D_oloc((H5D_t *)obj); + break; + + case H5I_ATTR: + oloc = H5A_oloc((H5A_t *)obj); + break; + + case H5I_MAP: + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "maps not supported in native VOL connector") + + case H5I_UNINIT: + case H5I_BADID: + case H5I_DATASPACE: + case H5I_VFL: + case H5I_VOL: + case H5I_GENPROP_CLS: + case H5I_GENPROP_LST: + case H5I_ERROR_CLASS: + case H5I_ERROR_MSG: + case H5I_ERROR_STACK: + case H5I_SPACE_SEL_ITER: + case H5I_NTYPES: + default: + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") + } /* end switch */ + + /* Set return value for objects (not files) */ + if(oloc) + *file = oloc->file; + + /* Couldn't find a file struct */ + if(!*file) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "object is not associated with a file") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5VL_native_get_file_struct */ + diff --git a/src/H5VLnative.h b/src/H5VLnative.h index 44ed670..e1f3f93 100644 --- a/src/H5VLnative.h +++ b/src/H5VLnative.h @@ -88,11 +88,23 @@ /* Values for native VOL connector object optional VOL operations */ #define H5VL_NATIVE_OBJECT_GET_COMMENT 0 /* H5G|H5Oget_comment, H5Oget_comment_by_name */ -#define H5VL_NATIVE_OBJECT_GET_INFO 1 /* H5Oget_info(_by_idx, _by_name)(2) */ -#define H5VL_NATIVE_OBJECT_SET_COMMENT 2 /* H5G|H5Oset_comment, H5Oset_comment_by_name */ -#define H5VL_NATIVE_OBJECT_DISABLE_MDC_FLUSHES 3 /* H5Odisable_mdc_flushes */ -#define H5VL_NATIVE_OBJECT_ENABLE_MDC_FLUSHES 4 /* H5Oenable_mdc_flushes */ -#define H5VL_NATIVE_OBJECT_ARE_MDC_FLUSHES_DISABLED 5 /* H5Oare_mdc_flushes_disabled */ +#define H5VL_NATIVE_OBJECT_SET_COMMENT 1 /* H5G|H5Oset_comment, H5Oset_comment_by_name */ +#define H5VL_NATIVE_OBJECT_DISABLE_MDC_FLUSHES 2 /* H5Odisable_mdc_flushes */ +#define H5VL_NATIVE_OBJECT_ENABLE_MDC_FLUSHES 3 /* H5Oenable_mdc_flushes */ +#define H5VL_NATIVE_OBJECT_ARE_MDC_FLUSHES_DISABLED 4 /* H5Oare_mdc_flushes_disabled */ +#define H5VL_NATIVE_OBJECT_GET_NATIVE_INFO 5 /* H5Oget_native_info(_by_idx, _by_name) */ + +/*******************/ +/* Public Typedefs */ +/*******************/ + +/********************/ +/* Public Variables */ +/********************/ + +/*********************/ +/* Public Prototypes */ +/*********************/ /*******************/ /* Public Typedefs */ @@ -110,7 +122,11 @@ extern "C" { #endif -/* Private functions */ +/* Token <--> address converters */ +H5_DLL herr_t H5VLnative_addr_to_token(hid_t loc_id, haddr_t addr, H5O_token_t *token); +H5_DLL herr_t H5VLnative_token_to_addr(hid_t loc_id, H5O_token_t token, haddr_t *addr); + +/* Not really public but must be included here */ H5_DLL hid_t H5VL_native_register(void); #ifdef __cplusplus diff --git a/src/H5VLnative_file.c b/src/H5VLnative_file.c index 005859d..23ea37b 100644 --- a/src/H5VLnative_file.c +++ b/src/H5VLnative_file.c @@ -226,7 +226,7 @@ H5VL__native_file_get(void *obj, H5VL_file_get_t get_type, ssize_t *ret = HDva_arg(arguments, ssize_t *); size_t len; - if(NULL == (f = H5F__get_file(obj, type))) + if(H5VL_native_get_file_struct(obj, type, &f) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") len = HDstrlen(H5F_OPEN_NAME(f)); @@ -313,7 +313,7 @@ H5VL__native_file_specific(void *obj, H5VL_file_specific_t specific_type, H5F_t *f = NULL; /* File to flush */ /* Get the file for the object */ - if(NULL == (f = H5F__get_file(obj, type))) + if(H5VL_native_get_file_struct(obj, type, &f) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") /* Nothing to do if the file is read only. This determination is @@ -519,7 +519,7 @@ H5VL__native_file_optional(void *obj, H5VL_file_optional_t optional_type, /* Get the file struct. This call is careful to not return the file pointer * for the top file in a mount hierarchy. */ - if(NULL == (f = H5F__get_file(obj, type))) + if(H5VL_native_get_file_struct(obj, type, &f) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "could not get a file struct") /* Get the file info */ diff --git a/src/H5VLnative_link.c b/src/H5VLnative_link.c index 9a633ac..051de19 100644 --- a/src/H5VLnative_link.c +++ b/src/H5VLnative_link.c @@ -241,16 +241,16 @@ H5VL__native_link_get(void *obj, const H5VL_loc_params_t *loc_params, H5VL_link_ /* H5Lget_info/H5Lget_info_by_idx */ case H5VL_LINK_GET_INFO: { - H5L_info_t *linfo = HDva_arg(arguments, H5L_info_t *); + H5L_info2_t *linfo2 = HDva_arg(arguments, H5L_info2_t *); /* Get the link information */ if(loc_params->type == H5VL_OBJECT_BY_NAME) { /* H5Lget_info */ - if(H5L_get_info(&loc, loc_params->loc_data.loc_by_name.name, linfo) < 0) + if(H5L_get_info(&loc, loc_params->loc_data.loc_by_name.name, linfo2) < 0) HGOTO_ERROR(H5E_LINK, H5E_NOTFOUND, FAIL, "unable to get link info") } /* end if */ else if(loc_params->type == H5VL_OBJECT_BY_IDX) { /* H5Lget_info_by_idx */ if(H5L_get_info_by_idx(&loc, loc_params->loc_data.loc_by_idx.name, loc_params->loc_data.loc_by_idx.idx_type, - loc_params->loc_data.loc_by_idx.order, loc_params->loc_data.loc_by_idx.n, linfo) < 0) + loc_params->loc_data.loc_by_idx.order, loc_params->loc_data.loc_by_idx.n, linfo2) < 0) HGOTO_ERROR(H5E_LINK, H5E_NOTFOUND, FAIL, "unable to get link info") } /* end else-if */ else @@ -341,12 +341,12 @@ H5VL__native_link_specific(void *obj, const H5VL_loc_params_t *loc_params, H5VL_ case H5VL_LINK_ITER: { H5G_loc_t loc; - hbool_t recursive = (hbool_t)HDva_arg(arguments, unsigned); - H5_index_t idx_type = (H5_index_t)HDva_arg(arguments, int); /* enum work-around */ - H5_iter_order_t order = (H5_iter_order_t)HDva_arg(arguments, int); /* enum work-around */ - hsize_t *idx_p = HDva_arg(arguments, hsize_t *); - H5L_iterate_t op = HDva_arg(arguments, H5L_iterate_t); - void *op_data = HDva_arg(arguments, void *); + hbool_t recursive = (hbool_t)HDva_arg(arguments, unsigned); + H5_index_t idx_type = (H5_index_t)HDva_arg(arguments, int); /* enum work-around */ + H5_iter_order_t order = (H5_iter_order_t)HDva_arg(arguments, int); /* enum work-around */ + hsize_t *idx_p = HDva_arg(arguments, hsize_t *); + H5L_iterate2_t op = HDva_arg(arguments, H5L_iterate2_t); + void *op_data = HDva_arg(arguments, void *); /* Get the location */ if(H5G_loc_real(obj, loc_params->obj_type, &loc) < 0) diff --git a/src/H5VLnative_object.c b/src/H5VLnative_object.c index e6b3295..3a29b6c 100644 --- a/src/H5VLnative_object.c +++ b/src/H5VLnative_object.c @@ -72,11 +72,12 @@ H5VL__native_object_open(void *obj, const H5VL_loc_params_t *loc_params, H5I_typ case H5VL_OBJECT_BY_TOKEN: { - const uint8_t *p = (const uint8_t *)loc_params->loc_data.loc_by_token.token; + H5O_token_t token = *loc_params->loc_data.loc_by_token.token; haddr_t addr; /* Decode token */ - H5F_addr_decode(loc.oloc->file, &p, &addr); + if(H5VL_native_token_to_addr(loc.oloc->file, H5I_FILE, token, &addr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTUNSERIALIZE, NULL, "can't deserialize object token into address") /* Open the object */ if(NULL == (ret_value = H5O_open_by_addr(&loc, addr, opened_type))) @@ -184,13 +185,15 @@ H5VL__native_object_get(void *obj, const H5VL_loc_params_t *loc_params, H5VL_obj } /* end if */ else if(loc_params->type == H5VL_OBJECT_BY_TOKEN) { H5O_loc_t obj_oloc; /* Object location */ - const uint8_t *p = (const uint8_t *)loc_params->loc_data.loc_by_token.token; + H5O_token_t token = *loc_params->loc_data.loc_by_token.token; /* Initialize the object location */ H5O_loc_reset(&obj_oloc); obj_oloc.file = loc.oloc->file; + /* Decode token */ - H5F_addr_decode(obj_oloc.file, &p, &obj_oloc.addr); + if(H5VL_native_token_to_addr(obj_oloc.file, H5I_FILE, token, &obj_oloc.addr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") /* Retrieve object's name */ if((*ret = H5G_get_name_by_addr(loc.oloc->file, &obj_oloc, name, size)) < 0) @@ -209,13 +212,15 @@ H5VL__native_object_get(void *obj, const H5VL_loc_params_t *loc_params, H5VL_obj if(loc_params->type == H5VL_OBJECT_BY_TOKEN) { H5O_loc_t obj_oloc; /* Object location */ unsigned rc; /* Reference count of object */ - const uint8_t *p = (const uint8_t *)loc_params->loc_data.loc_by_token.token; + H5O_token_t token = *loc_params->loc_data.loc_by_token.token; /* Initialize the object location */ H5O_loc_reset(&obj_oloc); obj_oloc.file = loc.oloc->file; + /* Decode token */ - H5F_addr_decode(obj_oloc.file, &p, &obj_oloc.addr); + if(H5VL_native_token_to_addr(obj_oloc.file, H5I_FILE, token, &obj_oloc.addr) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTUNSERIALIZE, FAIL, "can't deserialize object token into address") /* Get the # of links for object, and its type */ /* (To check to make certain that this object hasn't been deleted) */ @@ -226,6 +231,56 @@ H5VL__native_object_get(void *obj, const H5VL_loc_params_t *loc_params, H5VL_obj break; } + /* H5Oget_info(_name|_by_idx)3 */ + case H5VL_OBJECT_GET_INFO: + { + H5O_info2_t *oinfo = HDva_arg(arguments, H5O_info2_t *); + unsigned fields = HDva_arg(arguments, unsigned); + + /* Use the original H5Oget_info code to get the data */ + + if(loc_params->type == H5VL_OBJECT_BY_SELF) { /* H5Oget_info */ + /* Retrieve the object's information */ + if(H5G_loc_info(&loc, ".", oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "object not found") + } /* end if */ + else if(loc_params->type == H5VL_OBJECT_BY_NAME) { /* H5Oget_info_by_name */ + /* Retrieve the object's information */ + if(H5G_loc_info(&loc, loc_params->loc_data.loc_by_name.name, oinfo, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "object not found") + } /* end else-if */ + else if(loc_params->type == H5VL_OBJECT_BY_IDX) { /* H5Oget_info_by_idx */ + H5G_loc_t obj_loc; /* Location used to open group */ + H5G_name_t obj_path; /* Opened object group hier. path */ + H5O_loc_t obj_oloc; /* Opened object object location */ + + /* Set up opened group location to fill in */ + obj_loc.oloc = &obj_oloc; + obj_loc.path = &obj_path; + H5G_loc_reset(&obj_loc); + + /* Find the object's location, according to the order in the index */ + if(H5G_loc_find_by_idx(&loc, loc_params->loc_data.loc_by_idx.name, + loc_params->loc_data.loc_by_idx.idx_type, + loc_params->loc_data.loc_by_idx.order, + loc_params->loc_data.loc_by_idx.n, &obj_loc/*out*/) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "group not found") + + /* Retrieve the object's information */ + if(H5O_get_info(obj_loc.oloc, oinfo, fields) < 0) { + H5G_loc_free(&obj_loc); + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object info") + } /* end if */ + + /* Release the object location */ + if(H5G_loc_free(&obj_loc) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "can't free location") + } /* end else-if */ + else + HGOTO_ERROR(H5E_OHDR, H5E_UNSUPPORTED, FAIL, "unknown get info parameters") + break; + } + default: HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get this type of information from object") } /* end switch */ @@ -287,7 +342,7 @@ H5VL__native_object_specific(void *obj, const H5VL_loc_params_t *loc_params, H5V /* Lookup object */ case H5VL_OBJECT_LOOKUP: { - H5VL_token_t *token = va_arg(arguments, H5VL_token_t *); + H5O_token_t *token = va_arg(arguments, H5O_token_t *); HDassert(token); @@ -295,7 +350,6 @@ H5VL__native_object_specific(void *obj, const H5VL_loc_params_t *loc_params, H5V H5G_loc_t obj_loc; /* Group hier. location of object */ H5G_name_t obj_path; /* Object group hier. path */ H5O_loc_t obj_oloc; /* Object object location */ - uint8_t *p = (uint8_t *)token; /* Pointer to token */ /* Set up opened group location to fill in */ obj_loc.oloc = &obj_oloc; @@ -307,7 +361,8 @@ H5VL__native_object_specific(void *obj, const H5VL_loc_params_t *loc_params, H5V HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "object not found") /* Encode token */ - H5F_addr_encode(obj_oloc.file, &p, obj_loc.oloc->addr); + if(H5VL_native_addr_to_token(loc.oloc->file, H5I_FILE, obj_loc.oloc->addr, token) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSERIALIZE, FAIL, "can't serialize address into object token") /* Release the object location */ if(H5G_loc_free(&obj_loc) < 0) @@ -322,7 +377,7 @@ H5VL__native_object_specific(void *obj, const H5VL_loc_params_t *loc_params, H5V { H5_index_t idx_type = (H5_index_t)HDva_arg(arguments, int); /* enum work-around */ H5_iter_order_t order = (H5_iter_order_t)HDva_arg(arguments, int); /* enum work-around */ - H5O_iterate_t op = HDva_arg(arguments, H5O_iterate_t); + H5O_iterate2_t op = HDva_arg(arguments, H5O_iterate2_t); void *op_data = HDva_arg(arguments, void *); unsigned fields = HDva_arg(arguments, unsigned); @@ -397,54 +452,6 @@ H5VL__native_object_optional(void *obj, H5VL_object_optional_t optional_type, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") switch(optional_type) { - /* H5Oget_info / H5Oget_info_by_name / H5Oget_info_by_idx */ - case H5VL_NATIVE_OBJECT_GET_INFO: - { - H5O_info_t *obj_info = HDva_arg(arguments, H5O_info_t *); - unsigned fields = HDva_arg(arguments, unsigned); - - if(loc_params->type == H5VL_OBJECT_BY_SELF) { /* H5Oget_info */ - /* Retrieve the object's information */ - if(H5G_loc_info(&loc, ".", obj_info, fields) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "object not found") - } /* end if */ - else if(loc_params->type == H5VL_OBJECT_BY_NAME) { /* H5Oget_info_by_name */ - /* Retrieve the object's information */ - if(H5G_loc_info(&loc, loc_params->loc_data.loc_by_name.name, obj_info, fields) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "object not found") - } /* end else-if */ - else if(loc_params->type == H5VL_OBJECT_BY_IDX) { /* H5Oget_info_by_idx */ - H5G_loc_t obj_loc; /* Location used to open group */ - H5G_name_t obj_path; /* Opened object group hier. path */ - H5O_loc_t obj_oloc; /* Opened object object location */ - - /* Set up opened group location to fill in */ - obj_loc.oloc = &obj_oloc; - obj_loc.path = &obj_path; - H5G_loc_reset(&obj_loc); - - /* Find the object's location, according to the order in the index */ - if(H5G_loc_find_by_idx(&loc, loc_params->loc_data.loc_by_idx.name, - loc_params->loc_data.loc_by_idx.idx_type, - loc_params->loc_data.loc_by_idx.order, - loc_params->loc_data.loc_by_idx.n, &obj_loc/*out*/) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "group not found") - - /* Retrieve the object's information */ - if(H5O_get_info(obj_loc.oloc, obj_info, fields) < 0) { - H5G_loc_free(&obj_loc); - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object info") - } /* end if */ - - /* Release the object location */ - if(H5G_loc_free(&obj_loc) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "can't free location") - } /* end else-if */ - else - HGOTO_ERROR(H5E_OHDR, H5E_UNSUPPORTED, FAIL, "unknown get info parameters") - break; - } - /* H5Oget_comment / H5Oget_comment_by_name */ case H5VL_NATIVE_OBJECT_GET_COMMENT: { @@ -520,6 +527,57 @@ H5VL__native_object_optional(void *obj, H5VL_object_optional_t optional_type, break; } + /* H5Oget_native_info(_name|_by_idx) */ + case H5VL_NATIVE_OBJECT_GET_NATIVE_INFO: + { + H5O_native_info_t *native_info = HDva_arg(arguments, H5O_native_info_t *); + unsigned fields = HDva_arg(arguments, unsigned); + + /* Use the original H5Oget_info code to get the data */ + + if(loc_params->type == H5VL_OBJECT_BY_SELF) { /* H5Oget_info */ + /* Retrieve the object's information */ + if(H5G_loc_native_info(&loc, ".", native_info, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "object not found") + } /* end if */ + else if(loc_params->type == H5VL_OBJECT_BY_NAME) { /* H5Oget_info_by_name */ + /* Retrieve the object's information */ + if(H5G_loc_native_info(&loc, loc_params->loc_data.loc_by_name.name, native_info, fields) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "object not found") + } /* end else-if */ + else if(loc_params->type == H5VL_OBJECT_BY_IDX) { /* H5Oget_info_by_idx */ + H5G_loc_t obj_loc; /* Location used to open group */ + H5G_name_t obj_path; /* Opened object group hier. path */ + H5O_loc_t obj_oloc; /* Opened object object location */ + + /* Set up opened group location to fill in */ + obj_loc.oloc = &obj_oloc; + obj_loc.path = &obj_path; + H5G_loc_reset(&obj_loc); + + /* Find the object's location, according to the order in the index */ + if(H5G_loc_find_by_idx(&loc, loc_params->loc_data.loc_by_idx.name, + loc_params->loc_data.loc_by_idx.idx_type, + loc_params->loc_data.loc_by_idx.order, + loc_params->loc_data.loc_by_idx.n, &obj_loc/*out*/) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "group not found") + + /* Retrieve the object's information */ + if(H5O_get_native_info(obj_loc.oloc, native_info, fields) < 0) { + H5G_loc_free(&obj_loc); + HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't retrieve object info") + } /* end if */ + + /* Release the object location */ + if(H5G_loc_free(&obj_loc) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "can't free location") + } /* end else-if */ + else + HGOTO_ERROR(H5E_OHDR, H5E_UNSUPPORTED, FAIL, "unknown get info parameters") + + break; + } + default: HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't perform this operation on object"); } /* end switch */ diff --git a/src/H5VLnative_private.h b/src/H5VLnative_private.h index ad9a496..30bddb6 100644 --- a/src/H5VLnative_private.h +++ b/src/H5VLnative_private.h @@ -18,7 +18,8 @@ #define _H5VLnative_private_H /* Private headers needed by this file */ -#include "H5VLnative.h" /* Native VOL connector */ +#include "H5Fprivate.h" /* Files */ +#include "H5VLnative.h" /* Native VOL connector */ /**************************/ @@ -110,6 +111,18 @@ H5_DLL herr_t H5VL__native_blob_put(void *obj, const void *buf, size_t size, voi H5_DLL herr_t H5VL__native_blob_get(void *obj, const void *blob_id, void *buf, size_t size, void *ctx); H5_DLL herr_t H5VL__native_blob_specific(void *obj, void *blob_id, H5VL_blob_specific_t specific_type, va_list arguments); +/* Token callbacks */ +H5_DLL herr_t H5VL__native_token_cmp(void *obj, const H5O_token_t *token1, const H5O_token_t *token2, int *cmp_value); +H5_DLL herr_t H5VL__native_token_to_str(void *obj, H5I_type_t obj_type, const H5O_token_t *token, char **token_str); +H5_DLL herr_t H5VL__native_str_to_token(void *obj, H5I_type_t obj_type, const char *token_str, H5O_token_t *token); + +/* Helper functions */ +H5_DLL herr_t H5VL_native_get_file_addr_len(hid_t loc_id, size_t *addr_len); +H5_DLL herr_t H5VL__native_get_file_addr_len(void *obj, H5I_type_t obj_type, size_t *addr_len); +H5_DLL herr_t H5VL_native_addr_to_token(void *obj, H5I_type_t obj_type, haddr_t addr, H5O_token_t *token); +H5_DLL herr_t H5VL_native_token_to_addr(void *obj, H5I_type_t obj_type, H5O_token_t token, haddr_t *addr); +H5_DLL herr_t H5VL_native_get_file_struct(void *obj, H5I_type_t type, H5F_t **file); + #ifdef __cplusplus } #endif diff --git a/src/H5VLnative_token.c b/src/H5VLnative_token.c new file mode 100644 index 0000000..2b5429e --- /dev/null +++ b/src/H5VLnative_token.c @@ -0,0 +1,157 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * Purpose: Object token callbacks for the native VOL connector + */ + +/***********/ +/* Headers */ +/***********/ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5MMprivate.h" /* Memory handling */ +#include "H5VLnative_private.h" /* Native VOL connector */ + +/****************/ +/* Local Macros */ +/****************/ + + +/******************/ +/* Local Typedefs */ +/******************/ + + +/********************/ +/* Local Prototypes */ +/********************/ + + +/*********************/ +/* Package Variables */ +/*********************/ + + +/*****************************/ +/* Library Private Variables */ +/*****************************/ + + +/*******************/ +/* Local Variables */ +/*******************/ + + + +/*--------------------------------------------------------------------------- + * Function: H5VL__native_token_cmp + * + * Purpose: Compare two of the connector's object tokens, setting + * *cmp_value, following the same rules as strcmp(). + * + * Return: Success: 0 + * Failure: (can't fail) + * + *--------------------------------------------------------------------------- + */ +herr_t +H5VL__native_token_cmp(void H5_ATTR_UNUSED *obj, + const H5O_token_t *token1, const H5O_token_t *token2, int *cmp_value) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_PACKAGE_NOERR + + /* Check parameters */ + HDassert(token1); + HDassert(token2); + + *cmp_value = HDmemcmp(token1, token2, sizeof(H5O_token_t)); + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL__native_token_cmp() */ + + +/*--------------------------------------------------------------------------- + * Function: H5VL__native_token_to_str + * + * Purpose: Serialize an object token into a string + * + * Return: Success: 0 + * Failure: -1 + * + *--------------------------------------------------------------------------- + */ +herr_t +H5VL__native_token_to_str(void *obj, H5I_type_t obj_type, const H5O_token_t *token, + char **token_str) +{ + haddr_t addr; + size_t addr_ndigits; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_PACKAGE + + /* Check parameters */ + HDassert(obj); + HDassert(token); + + if(H5VL_native_token_to_addr(obj, obj_type, *token, &addr) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTDECODE, FAIL, "can't convert object token to address") + + if(addr == 0) + addr_ndigits = 1; + else + addr_ndigits = (size_t)(HDfloor(HDlog10((double)addr)) + 1); + + if(NULL == (*token_str = H5MM_malloc(addr_ndigits + 1))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate buffer for token string") + + HDsnprintf(*token_str, addr_ndigits + 1, H5_PRINTF_HADDR_FMT, addr); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL__native_token_to_str() */ + + +/*--------------------------------------------------------------------------- + * Function: H5VL__native_str_to_token + * + * Purpose: Deserialize a string into an object token + * + * Return: Success: 0 + * Failure: -1 + * + *--------------------------------------------------------------------------- + */ +herr_t +H5VL__native_str_to_token(void *obj, H5I_type_t obj_type, + const char *token_str, H5O_token_t *token) +{ + haddr_t addr; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_PACKAGE + + /* Check parameters */ + HDassert(token_str); + + HDsscanf(token_str, H5_PRINTF_HADDR_FMT, &addr); + + if(H5VL_native_addr_to_token(obj, obj_type, addr, token) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTDECODE, FAIL, "can't convert address to object token") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL__native_str_to_token() */ + diff --git a/src/H5VLpassthru.c b/src/H5VLpassthru.c index 076d6de..5c9f28c 100644 --- a/src/H5VLpassthru.c +++ b/src/H5VLpassthru.c @@ -188,6 +188,11 @@ static herr_t H5VL_pass_through_blob_get(void *obj, const void *blob_id, void *b static herr_t H5VL_pass_through_blob_specific(void *obj, void *blob_id, H5VL_blob_specific_t specific_type, va_list arguments); static herr_t H5VL_pass_through_blob_optional(void *obj, void *blob_id, H5VL_blob_optional_t opt_type, va_list arguments); +/* Token callbacks */ +static herr_t H5VL_pass_through_token_cmp(void *obj, const H5O_token_t *token1, const H5O_token_t *token2, int *cmp_value); +static herr_t H5VL_pass_through_token_to_str(void *obj, H5I_type_t obj_type, const H5O_token_t *token, char **token_str); +static herr_t H5VL_pass_through_token_from_str(void *obj, H5I_type_t obj_type, const char *token_str, H5O_token_t *token); + /* Generic optional callback */ static herr_t H5VL_pass_through_optional(void *obj, int op_type, hid_t dxpl_id, void **req, va_list arguments); @@ -296,6 +301,11 @@ static const H5VL_class_t H5VL_pass_through_g = { H5VL_pass_through_blob_specific, /* specific */ H5VL_pass_through_blob_optional /* optional */ }, + { /* token_cls */ + H5VL_pass_through_token_cmp, /* cmp */ + H5VL_pass_through_token_to_str, /* to_str */ + H5VL_pass_through_token_from_str /* from_str */ + }, H5VL_pass_through_optional /* optional */ }; @@ -3028,6 +3038,104 @@ H5VL_pass_through_blob_optional(void *obj, void *blob_id, } /* end H5VL_pass_through_blob_optional() */ +/*--------------------------------------------------------------------------- + * Function: H5VL_pass_through_token_cmp + * + * Purpose: Compare two of the connector's object tokens, setting + * *cmp_value, following the same rules as strcmp(). + * + * Return: Success: 0 + * Failure: -1 + * + *--------------------------------------------------------------------------- + */ +static herr_t +H5VL_pass_through_token_cmp(void *obj, const H5O_token_t *token1, + const H5O_token_t *token2, int *cmp_value) +{ + H5VL_pass_through_t *o = (H5VL_pass_through_t *)obj; + herr_t ret_value; + +#ifdef ENABLE_PASSTHRU_LOGGING + printf("------- PASS THROUGH VOL TOKEN Compare\n"); +#endif + + /* Sanity checks */ + assert(obj); + assert(token1); + assert(token2); + assert(cmp_value); + + ret_value = H5VLtoken_cmp(o->under_object, o->under_vol_id, token1, token2, cmp_value); + + return ret_value; +} /* end H5VL_pass_through_token_cmp() */ + + +/*--------------------------------------------------------------------------- + * Function: H5VL_pass_through_token_to_str + * + * Purpose: Serialize the connector's object token into a string. + * + * Return: Success: 0 + * Failure: -1 + * + *--------------------------------------------------------------------------- + */ +static herr_t +H5VL_pass_through_token_to_str(void *obj, H5I_type_t obj_type, + const H5O_token_t *token, char **token_str) +{ + H5VL_pass_through_t *o = (H5VL_pass_through_t *)obj; + herr_t ret_value; + +#ifdef ENABLE_PASSTHRU_LOGGING + printf("------- PASS THROUGH VOL TOKEN To string\n"); +#endif + + /* Sanity checks */ + assert(obj); + assert(token); + assert(token_str); + + ret_value = H5VLtoken_to_str(o->under_object, obj_type, o->under_vol_id, token, token_str); + + return ret_value; +} /* end H5VL_pass_through_token_to_str() */ + + +/*--------------------------------------------------------------------------- + * Function: H5VL_pass_through_token_from_str + * + * Purpose: Deserialize the connector's object token from a string. + * + * Return: Success: 0 + * Failure: -1 + * + *--------------------------------------------------------------------------- + */ +static herr_t +H5VL_pass_through_token_from_str(void *obj, H5I_type_t obj_type, + const char *token_str, H5O_token_t *token) +{ + H5VL_pass_through_t *o = (H5VL_pass_through_t *)obj; + herr_t ret_value; + +#ifdef ENABLE_PASSTHRU_LOGGING + printf("------- PASS THROUGH VOL TOKEN From string\n"); +#endif + + /* Sanity checks */ + assert(obj); + assert(token); + assert(token_str); + + ret_value = H5VLtoken_from_str(o->under_object, obj_type, o->under_vol_id, token_str, token); + + return ret_value; +} /* end H5VL_pass_through_token_from_str() */ + + /*------------------------------------------------------------------------- * Function: H5VL_pass_through_optional * diff --git a/src/H5VLpkg.h b/src/H5VLpkg.h index fc3088d..5965adc 100644 --- a/src/H5VLpkg.h +++ b/src/H5VLpkg.h @@ -54,7 +54,8 @@ H5_DLL hid_t H5VL__register_connector_by_name(const char *name, hbool_t app_ref, H5_DLL hid_t H5VL__register_connector_by_value(H5VL_class_value_t value, hbool_t app_ref, hid_t vipl_id); H5_DLL htri_t H5VL__is_connector_registered(const char *name); -H5_DLL hid_t H5VL__get_connector_id(const char *name, hbool_t is_api); +H5_DLL hid_t H5VL__get_connector_id(hid_t obj_id, hbool_t is_api); +H5_DLL hid_t H5VL__get_connector_id_by_name(const char *name, hbool_t is_api); H5_DLL hid_t H5VL__peek_connector_id(const char *name); H5_DLL herr_t H5VL__connector_str_to_info(const char *str, hid_t connector_id, void **info); diff --git a/src/H5VLprivate.h b/src/H5VLprivate.h index 18d6825..24ae1f3 100644 --- a/src/H5VLprivate.h +++ b/src/H5VLprivate.h @@ -209,6 +209,14 @@ H5_DLL herr_t H5VL_blob_get(const H5VL_object_t *vol_obj, const void *blob_id, v H5_DLL herr_t H5VL_blob_specific(const H5VL_object_t *vol_obj, void *blob_id, H5VL_blob_specific_t specific_type, ...); H5_DLL herr_t H5VL_blob_optional(const H5VL_object_t *vol_obj, void *blob_id, H5VL_blob_optional_t opt_type, ...); +/* Token functions */ +H5_DLL herr_t H5VL_token_cmp(const H5VL_object_t *vol_obj, const H5O_token_t *token1, + const H5O_token_t *token2, int *cmp_value); +H5_DLL herr_t H5VL_token_to_str(const H5VL_object_t *vol_obj, H5I_type_t obj_type, + const H5O_token_t *token, char **token_str); +H5_DLL herr_t H5VL_token_from_str(const H5VL_object_t *vol_obj, H5I_type_t obj_type, + const char *token_str, H5O_token_t *token); + /* Generic functions */ H5_DLL herr_t H5VL_optional(const H5VL_object_t *vol_obj, int op_type, hid_t dxpl_id, void **req, ...); diff --git a/src/H5VLpublic.h b/src/H5VLpublic.h index 34a642e..883aac8 100644 --- a/src/H5VLpublic.h +++ b/src/H5VLpublic.h @@ -66,7 +66,8 @@ extern "C" { H5_DLL hid_t H5VLregister_connector_by_name(const char *connector_name, hid_t vipl_id); H5_DLL hid_t H5VLregister_connector_by_value(H5VL_class_value_t connector_value, hid_t vipl_id); H5_DLL htri_t H5VLis_connector_registered(const char *name); -H5_DLL hid_t H5VLget_connector_id(const char *name); +H5_DLL hid_t H5VLget_connector_id(hid_t obj_id); +H5_DLL hid_t H5VLget_connector_id_by_name(const char *name); H5_DLL ssize_t H5VLget_connector_name(hid_t id, char *name/*out*/, size_t size); H5_DLL herr_t H5VLclose(hid_t connector_id); H5_DLL herr_t H5VLunregister_connector(hid_t connector_id); diff --git a/src/H5Ztrans.c b/src/H5Ztrans.c index 2245bd3..6d07513 100644 --- a/src/H5Ztrans.c +++ b/src/H5Ztrans.c @@ -324,7 +324,7 @@ static void H5Z_print(H5Z_node *tree, FILE *stream); #define H5Z_XFORM_DO_OP5(TYPE, SIZE) \ { \ - TYPE val = (TYPE)((tree->type == H5Z_XFORM_INTEGER) ? tree->value.int_val : tree->value.float_val); \ + TYPE val = ((tree->type == H5Z_XFORM_INTEGER) ? (TYPE)tree->value.int_val : (TYPE)tree->value.float_val); \ H5VM_array_fill(array, &val, sizeof(TYPE), (SIZE)); \ } diff --git a/src/H5mpi.c b/src/H5mpi.c index f529b3d..4e1bc95 100644 --- a/src/H5mpi.c +++ b/src/H5mpi.c @@ -75,7 +75,7 @@ H5_mpi_set_bigio_count(hsize_t new_count) *------------------------------------------------------------------------- */ hsize_t -H5_mpi_get_bigio_count() +H5_mpi_get_bigio_count(void) { return bigio_count; } @@ -482,7 +482,7 @@ H5_mpio_create_large_type(hsize_t num_elements, MPI_Aint stride_bytes, /* Calculate how many Big MPI datatypes are needed to represent the buffer */ num_big_types = (int)(num_elements/bigio_count); - leftover = num_elements - num_big_types * (hsize_t)bigio_count; + leftover = (hsize_t)num_elements - (hsize_t)num_big_types * bigio_count; H5_CHECKED_ASSIGN(remaining_bytes, int, leftover, hsize_t); /* Create a contiguous datatype of size equal to the largest @@ -491,11 +491,11 @@ H5_mpio_create_large_type(hsize_t num_elements, MPI_Aint stride_bytes, * use type_hvector to create the type with the displacement provided */ if (0 == stride_bytes) { - if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous(bigio_count, old_type, &inner_type))) + if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)bigio_count, old_type, &inner_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code) } /* end if */ else - if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hvector(bigio_count, 1, stride_bytes, old_type, &inner_type))) + if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hvector((int)bigio_count, 1, stride_bytes, old_type, &inner_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hvector failed", mpi_code) /* Create a contiguous datatype of the buffer (minus the remaining < 2GB part) diff --git a/src/H5overflow.txt b/src/H5overflow.txt index a9e5099..9fb3b89 100644 --- a/src/H5overflow.txt +++ b/src/H5overflow.txt @@ -29,7 +29,9 @@ # Creation Date: 2009/04/09 unsigned, UNSIGNED; +int8_t, SIGNED; int, SIGNED; +long, SIGNED; int64_t, SIGNED; uint8_t, UNSIGNED; uint16_t, UNSIGNED; diff --git a/src/H5private.h b/src/H5private.h index 5ab9daf..fbea9b8 100644 --- a/src/H5private.h +++ b/src/H5private.h @@ -305,15 +305,21 @@ */ #ifdef __cplusplus # define H5_ATTR_FORMAT(X,Y,Z) /*void*/ -# define H5_ATTR_UNUSED /*void*/ -# define H5_ATTR_NORETURN /*void*/ -# define H5_ATTR_CONST /*void*/ -# define H5_ATTR_PURE /*void*/ -# define H5_ATTR_FALLTHROUGH /*void*/ +# define H5_ATTR_UNUSED /*void*/ +# define H5_ATTR_NDEBUG_UNUSED /*void*/ +# define H5_ATTR_NORETURN /*void*/ +# define H5_ATTR_CONST /*void*/ +# define H5_ATTR_PURE /*void*/ +# define H5_ATTR_FALLTHROUGH /*void*/ #else /* __cplusplus */ #if defined(H5_HAVE_ATTRIBUTE) && !defined(__SUNPRO_C) # define H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) # define H5_ATTR_UNUSED __attribute__((unused)) +#ifndef NDEBUG +#define H5_ATTR_NDEBUG_UNUSED /*void*/ +#else /* NDEBUG */ +#define H5_ATTR_NDEBUG_UNUSED H5_ATTR_UNUSED +#endif /* NDEBUG */ # define H5_ATTR_NORETURN __attribute__((noreturn)) # define H5_ATTR_CONST __attribute__((const)) # define H5_ATTR_PURE __attribute__((pure)) @@ -324,11 +330,12 @@ #endif #else # define H5_ATTR_FORMAT(X,Y,Z) /*void*/ -# define H5_ATTR_UNUSED /*void*/ -# define H5_ATTR_NORETURN /*void*/ -# define H5_ATTR_CONST /*void*/ -# define H5_ATTR_PURE /*void*/ -# define H5_ATTR_FALLTHROUGH /*void*/ +# define H5_ATTR_UNUSED /*void*/ +# define H5_ATTR_NDEBUG_UNUSED /*void*/ +# define H5_ATTR_NORETURN /*void*/ +# define H5_ATTR_CONST /*void*/ +# define H5_ATTR_PURE /*void*/ +# define H5_ATTR_FALLTHROUGH /*void*/ #endif #endif /* __cplusplus */ @@ -527,28 +534,6 @@ #define H5_REQUEST_NULL NULL /* - * A macro to portably decrement enumerated types. - */ -#ifndef H5_DEC_ENUM -# define H5_DEC_ENUM(TYPE,VAR) (VAR)=((TYPE)((VAR)-1)) -#endif - -/* Double constant wrapper - * - * Quiets gcc warnings from -Wunsuffixed-float-constants. - * - * This is a really annoying warning since the standard specifies that - * constants of type double do NOT get a suffix so there's no way - * to specify a constant of type double. To quiet gcc, we specify floating - * point constants as type long double and cast to double. - * - * Note that this macro only needs to be used where using a double - * is important. For most code, suffixing constants with F will quiet the - * compiler and not produce erroneous code. - */ -#define H5_DOUBLE(S) ((double) S ## L) - -/* * Methods to compare the equality of floating-point values: * * 1. H5_XXX_ABS_EQUAL - check if the difference is smaller than the diff --git a/src/H5public.h b/src/H5public.h index 8021027..86a1fbb 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -328,6 +328,18 @@ typedef struct H5_ih_info_t { hsize_t heap_size; } H5_ih_info_t; +/* Tokens are unique and permanent identifiers that are + * used to reference HDF5 objects in a container. */ + +/* The maximum size allowed for tokens */ +#define H5O_MAX_TOKEN_SIZE (16) /* Allows for 128-bit tokens */ + +/* Type for object tokens */ +/* (Hoisted here, since it's used by both the H5Lpublic.h and H5Opublic.h headers) */ +typedef struct H5O_token_t { + uint8_t __data[H5O_MAX_TOKEN_SIZE]; +} H5O_token_t; + /* Functions in H5.c */ H5_DLL herr_t H5open(void); H5_DLL herr_t H5close(void); diff --git a/src/H5system.c b/src/H5system.c index 4b5e290..9310243 100644 --- a/src/H5system.c +++ b/src/H5system.c @@ -90,6 +90,8 @@ static hbool_t H5_ntzset = FALSE; * * The conversion 't' refers to an htri_t type. * + * The conversion 'k' refers to an H5O_token_t type. + * * Return: Success: Number of characters printed * * Failure: -1 @@ -416,6 +418,32 @@ HDfprintf(FILE *stream, const char *fmt, ...) } break; + case 'k': + { + H5O_token_t token = HDva_arg(ap, H5O_token_t); + + /* Print the raw token. */ + n = fprintf(stream, "%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X:%02X", + (unsigned char)token.__data[15], + (unsigned char)token.__data[14], + (unsigned char)token.__data[13], + (unsigned char)token.__data[12], + (unsigned char)token.__data[11], + (unsigned char)token.__data[10], + (unsigned char)token.__data[9], + (unsigned char)token.__data[8], + (unsigned char)token.__data[7], + (unsigned char)token.__data[6], + (unsigned char)token.__data[5], + (unsigned char)token.__data[4], + (unsigned char)token.__data[3], + (unsigned char)token.__data[2], + (unsigned char)token.__data[1], + (unsigned char)token.__data[0] + ); + } + break; + default: HDfputs(format_templ, stream); n = (int)HDstrlen(format_templ); diff --git a/src/H5trace.c b/src/H5trace.c index 83f0ac7..ec5c6a2 100644 --- a/src/H5trace.c +++ b/src/H5trace.c @@ -155,7 +155,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) } /* end if */ /* Get time for event */ - if(H5_DBL_ABS_EQUAL(first_time.etime, H5_DOUBLE(0.0))) + if(H5_DBL_ABS_EQUAL(first_time.etime, 0.0)) H5_timer_begin(&first_time); if(H5_debug_g.ttimes) H5_timer_begin(&event_time); @@ -1630,6 +1630,22 @@ H5_trace(const double *returning, const char *func, const char *type, ...) } /* end switch */ break; + case 'k': + if(ptr) { + if(vp) + HDfprintf(out, "0x%lx", (unsigned long)vp); + else + HDfprintf(out, "NULL"); + } /* end if */ + else { + H5O_token_t token = HDva_arg(ap, H5O_token_t); + int j; + + for (j = 0; j < H5O_MAX_TOKEN_SIZE; j++) + HDfprintf(out, "%02x", token.__data[j]); + } /* end else */ + break; + case 'L': switch(type[1]) { case 'l': @@ -3069,6 +3085,9 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case H5VL_OBJECT_GET_TYPE: HDfprintf(out, "H5VL_OBJECT_GET_TYPE"); break; + case H5VL_OBJECT_GET_INFO: + HDfprintf(out, "H5VL_OBJECT_GET_INFO"); + break; default: HDfprintf(out, "%ld", (long)get); break; @@ -3209,6 +3228,9 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case H5VL_SUBCLS_BLOB: HDfprintf(out, "H5VL_SUBCLS_BLOB"); break; + case H5VL_SUBCLS_TOKEN: + HDfprintf(out, "H5VL_SUBCLS_TOKEN"); + break; default: HDfprintf(out, "%ld", (long)subclass); break; @@ -3442,9 +3464,6 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case H5VL_NATIVE_OBJECT_GET_COMMENT: HDfprintf(out, "H5VL_NATIVE_OBJECT_GET_COMMENT"); break; - case H5VL_NATIVE_OBJECT_GET_INFO: - HDfprintf(out, "H5VL_NATIVE_OBJECT_GET_INFO"); - break; case H5VL_NATIVE_OBJECT_SET_COMMENT: HDfprintf(out, "H5VL_NATIVE_OBJECT_SET_COMMENT"); break; @@ -3457,6 +3476,9 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case H5VL_NATIVE_OBJECT_ARE_MDC_FLUSHES_DISABLED: HDfprintf(out, "H5VL_NATIVE_OBJECT_ARE_MDC_FLUSHES_DISABLED"); break; + case H5VL_NATIVE_OBJECT_GET_NATIVE_INFO: + HDfprintf(out, "H5VL_NATIVE_OBJECT_GET_NATIVE_INFO"); + break; default: HDfprintf(out, "%ld", (long)optional); break; diff --git a/src/H5vers.txt b/src/H5vers.txt index 4b2f222..ae1d600 100644 --- a/src/H5vers.txt +++ b/src/H5vers.txt @@ -56,11 +56,26 @@ FUNCTION: H5Ewalk; H5E_walk, H5E_error; v10, v18 FUNCTION: H5Fget_info; H5F_info; v18, v110 FUNCTION: H5Gcreate; ; v10, v18 FUNCTION: H5Gopen; ; v10, v18 -FUNCTION: H5Oget_info; ; v18, v112 -FUNCTION: H5Oget_info_by_name; ; v18, v112 -FUNCTION: H5Oget_info_by_idx; ; v18, v112 -FUNCTION: H5Ovisit; ; v18, v112 -FUNCTION: H5Ovisit_by_name; ; v18, v112 +FUNCTION: H5Lget_info; H5L_info; v18, v112 +FUNCTION: H5Lget_info_by_idx; H5L_info; v18, v112 +FUNCTION: H5Literate; H5L_iterate; v18, v112 +FUNCTION: H5Literate_by_name; H5L_iterate; v18, v112 +FUNCTION: H5Lvisit; H5L_iterate; v18, v112 +FUNCTION: H5Lvisit_by_name; H5L_iterate; v18, v112 +# Note: v111 is allowed in make_vers because H5O functions were prematurely +# versioned in HDF5 1.10. Because users were affected by this, the +# versioning was rescinded but the H5O version 2 functions were kept +# to be called directly. Now that the version macros are added in 1.12, +# along with a 3rd version of the H5O functions, the H5O function +# version for default api=v110 should be version 1 to work correctly +# with 1.10 applications that were using unversioned H5O functions, +# and the H5O function version should be version 3 for default api=v112 +# (the default api version for 1.12). +FUNCTION: H5Oget_info; ; v18, v111, v112 +FUNCTION: H5Oget_info_by_name; ; v18, v111, v112 +FUNCTION: H5Oget_info_by_idx; ; v18, v111, v112 +FUNCTION: H5Ovisit; ; v18, v111, v112 +FUNCTION: H5Ovisit_by_name; ; v18, v111, v112 FUNCTION: H5Pencode; ; v110, v112 FUNCTION: H5Pget_filter; ; v10, v18 FUNCTION: H5Pget_filter_by_id; ; v16, v18 @@ -78,5 +93,7 @@ FUNCTION: H5Topen; ; v10, v18 # (although not required, it's easier to compare this file with the headers # generated if the list below is in alphanumeric sort order - QAK) TYPEDEF: H5E_auto; v10, v18 +TYPEDEF: H5O_info; v18, v112 +TYPEDEF: H5O_iterate; v18, v112 TYPEDEF: H5Z_class; v16, v18 diff --git a/src/Makefile.am b/src/Makefile.am index 8a4afbc..0c07c1b 100644 --- a/src/Makefile.am +++ b/src/Makefile.am @@ -38,7 +38,8 @@ MOSTLYCLEANFILES=H5Tinit.c H5lib_settings.c DISTCLEANFILES=H5pubconf.h # library sources -libhdf5_la_SOURCES= H5.c H5checksum.c H5dbg.c H5system.c H5timer.c H5trace.c \ +libhdf5_la_SOURCES= H5.c H5checksum.c H5dbg.c H5lib_settings.c H5system.c \ + H5timer.c H5trace.c \ H5A.c H5Abtree2.c H5Adense.c H5Adeprec.c H5Aint.c H5Atest.c \ H5AC.c H5ACdbg.c H5ACproxy_entry.c \ H5B.c H5Bcache.c H5Bdbg.c \ @@ -48,59 +49,49 @@ libhdf5_la_SOURCES= H5.c H5checksum.c H5dbg.c H5system.c H5timer.c H5trace.c \ H5Cprefetched.c H5Cquery.c H5Ctag.c H5Ctest.c \ H5CS.c \ H5CX.c \ - H5D.c H5Dbtree.c H5Dbtree2.c H5Dchunk.c H5Dcompact.c H5Dcontig.c H5Ddbg.c \ - H5Ddeprec.c H5Dearray.c H5Defl.c H5Dfarray.c H5Dfill.c H5Dint.c \ - H5Dio.c H5Dlayout.c H5Dnone.c \ - H5Doh.c H5Dscatgath.c H5Dselect.c \ - H5Dsingle.c H5Dtest.c H5Dvirtual.c \ + H5D.c H5Dbtree.c H5Dbtree2.c H5Dchunk.c H5Dcompact.c H5Dcontig.c \ + H5Ddbg.c H5Ddeprec.c H5Dearray.c H5Defl.c H5Dfarray.c H5Dfill.c \ + H5Dint.c H5Dio.c H5Dlayout.c H5Dnone.c H5Doh.c H5Dscatgath.c \ + H5Dselect.c H5Dsingle.c H5Dtest.c H5Dvirtual.c \ H5E.c H5Edeprec.c H5Eint.c \ H5EA.c H5EAcache.c H5EAdbg.c H5EAdblkpage.c H5EAdblock.c H5EAhdr.c \ H5EAiblock.c H5EAint.c H5EAsblock.c H5EAstat.c H5EAtest.c \ - H5F.c H5Faccum.c H5Fcwfs.c \ - H5Fdbg.c H5Fdeprec.c H5Fefc.c H5Ffake.c H5Fint.c H5Fio.c \ - H5Fmount.c H5Fquery.c \ - H5Fsfile.c H5Fspace.c H5Fsuper.c H5Fsuper_cache.c H5Ftest.c \ + H5F.c H5Faccum.c H5Fcwfs.c H5Fdbg.c H5Fdeprec.c H5Fefc.c H5Ffake.c \ + H5Fint.c H5Fio.c H5Fmount.c H5Fquery.c H5Fsfile.c H5Fspace.c \ + H5Fsuper.c H5Fsuper_cache.c H5Ftest.c \ H5FA.c H5FAcache.c H5FAdbg.c H5FAdblock.c H5FAdblkpage.c H5FAhdr.c \ H5FAint.c H5FAstat.c H5FAtest.c \ H5FD.c H5FDcore.c H5FDfamily.c H5FDhdfs.c H5FDint.c H5FDlog.c \ H5FDmulti.c H5FDsec2.c H5FDspace.c H5FDstdio.c H5FDtest.c \ H5FL.c H5FO.c H5FS.c H5FScache.c H5FSdbg.c H5FSint.c H5FSsection.c \ H5FSstat.c H5FStest.c \ - H5G.c H5Gbtree2.c H5Gcache.c \ - H5Gcompact.c H5Gdense.c H5Gdeprec.c H5Gent.c \ - H5Gint.c H5Glink.c \ - H5Gloc.c H5Gname.c H5Gnode.c H5Gobj.c H5Goh.c H5Groot.c H5Gstab.c H5Gtest.c \ - H5Gtraverse.c \ + H5G.c H5Gbtree2.c H5Gcache.c H5Gcompact.c H5Gdense.c H5Gdeprec.c \ + H5Gent.c H5Gint.c H5Glink.c H5Gloc.c H5Gname.c H5Gnode.c H5Gobj.c \ + H5Goh.c H5Groot.c H5Gstab.c H5Gtest.c H5Gtraverse.c \ H5HF.c H5HFbtree2.c H5HFcache.c H5HFdbg.c H5HFdblock.c H5HFdtable.c \ H5HFhdr.c H5HFhuge.c H5HFiblock.c H5HFiter.c H5HFman.c H5HFsection.c \ H5HFspace.c H5HFstat.c H5HFtest.c H5HFtiny.c \ H5HG.c H5HGcache.c H5HGdbg.c H5HGquery.c \ - H5HL.c H5HLcache.c H5HLdbg.c H5HLint.c H5HLprfx.c H5HLdblk.c\ - H5HP.c H5I.c H5Itest.c H5L.c H5Lexternal.c H5lib_settings.c \ + H5HL.c H5HLcache.c H5HLdbg.c H5HLint.c H5HLprfx.c H5HLdblk.c \ + H5HP.c \ + H5I.c H5Itest.c \ + H5L.c H5Ldeprec.c H5Lexternal.c \ H5M.c \ H5MF.c H5MFaggr.c H5MFdbg.c H5MFsection.c \ H5MM.c H5MP.c H5MPtest.c \ - H5O.c H5Odeprec.c H5Oainfo.c H5Oalloc.c H5Oattr.c \ - H5Oattribute.c H5Obogus.c H5Obtreek.c H5Ocache.c H5Ocache_image.c \ - H5Ochunk.c \ - H5Ocont.c H5Ocopy.c H5Ocopy_ref.c H5Odbg.c H5Odrvinfo.c H5Odtype.c H5Oefl.c \ - H5Ofill.c H5Oflush.c H5Ofsinfo.c H5Oginfo.c \ - H5Oint.c H5Olayout.c \ - H5Olinfo.c H5Olink.c H5Omessage.c H5Omtime.c \ - H5Oname.c H5Onull.c H5Opline.c H5Orefcount.c \ - H5Osdspace.c H5Oshared.c \ - H5Oshmesg.c \ - H5Ostab.c \ - H5Otest.c H5Ounknown.c \ - H5P.c H5Pacpl.c H5Pdapl.c H5Pdcpl.c \ - H5Pdeprec.c H5Pdxpl.c H5Pencdec.c \ - H5Pfapl.c H5Pfcpl.c H5Pfmpl.c \ - H5Pgcpl.c H5Pint.c H5Plapl.c H5Plcpl.c \ - H5Pmapl.c H5Pmcpl.c H5Pocpl.c H5Pocpypl.c H5Pstrcpl.c \ - H5Ptest.c \ + H5O.c H5Odeprec.c H5Oainfo.c H5Oalloc.c H5Oattr.c H5Oattribute.c \ + H5Obogus.c H5Obtreek.c H5Ocache.c H5Ocache_image.c H5Ochunk.c \ + H5Ocont.c H5Ocopy.c H5Ocopy_ref.c H5Odbg.c H5Odrvinfo.c H5Odtype.c \ + H5Oefl.c H5Ofill.c H5Oflush.c H5Ofsinfo.c H5Oginfo.c H5Oint.c \ + H5Olayout.c H5Olinfo.c H5Olink.c H5Omessage.c H5Omtime.c H5Oname.c \ + H5Onull.c H5Opline.c H5Orefcount.c H5Osdspace.c H5Oshared.c \ + H5Oshmesg.c H5Ostab.c H5Otest.c H5Ounknown.c \ + H5P.c H5Pacpl.c H5Pdapl.c H5Pdcpl.c H5Pdeprec.c H5Pdxpl.c H5Pencdec.c \ + H5Pfapl.c H5Pfcpl.c H5Pfmpl.c H5Pgcpl.c H5Pint.c H5Plapl.c H5Plcpl.c \ + H5Pmapl.c H5Pmcpl.c H5Pocpl.c H5Pocpypl.c H5Pstrcpl.c H5Ptest.c \ H5PB.c \ H5PL.c H5PLint.c H5PLpath.c H5PLplugin_cache.c \ - H5R.c H5Rint.c H5Rdeprec.c \ + H5R.c H5Rdeprec.c H5Rint.c \ H5UC.c \ H5RS.c \ H5S.c H5Sall.c H5Sdbg.c H5Sdeprec.c H5Shyper.c H5Snone.c H5Spoint.c \ @@ -109,21 +100,20 @@ libhdf5_la_SOURCES= H5.c H5checksum.c H5dbg.c H5system.c H5timer.c H5trace.c \ H5SM.c H5SMbtree2.c H5SMcache.c H5SMmessage.c H5SMtest.c \ H5ST.c \ H5T.c H5Tarray.c H5Tbit.c H5Tcommit.c H5Tcompound.c H5Tconv.c \ - H5Tcset.c H5Tdbg.c H5Tdeprec.c H5Tenum.c H5Tfields.c \ - H5Tfixed.c \ - H5Tfloat.c H5Tinit.c H5Tnative.c H5Toffset.c H5Toh.c \ - H5Topaque.c \ - H5Torder.c \ - H5Tref.c \ - H5Tpad.c H5Tprecis.c H5Tstrpad.c H5Tvisit.c H5Tvlen.c H5TS.c \ + H5Tcset.c H5Tdbg.c H5Tdeprec.c H5Tenum.c H5Tfields.c H5Tfixed.c \ + H5Tfloat.c H5Tinit.c H5Tnative.c H5Toffset.c H5Toh.c H5Topaque.c \ + H5Torder.c H5Tref.c H5Tpad.c H5Tprecis.c H5Tstrpad.c H5Tvisit.c \ + H5Tvlen.c \ + H5TS.c \ H5VL.c H5VLcallback.c H5VLint.c H5VLnative.c \ H5VLnative_attr.c H5VLnative_blob.c H5VLnative_dataset.c \ H5VLnative_datatype.c H5VLnative_file.c H5VLnative_group.c \ H5VLnative_link.c H5VLnative_introspect.c H5VLnative_object.c \ + H5VLnative_token.c \ H5VLpassthru.c \ H5VM.c H5WB.c H5Z.c \ - H5Zdeflate.c H5Zfletcher32.c H5Znbit.c H5Zshuffle.c \ - H5Zscaleoffset.c H5Zszip.c H5Ztrans.c + H5Zdeflate.c H5Zfletcher32.c H5Znbit.c H5Zshuffle.c H5Zscaleoffset.c \ + H5Zszip.c H5Ztrans.c # Only compile parallel sources if necessary if BUILD_PARALLEL_CONDITIONAL diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt index c7a945e..77f9191 100644 --- a/test/CMakeLists.txt +++ b/test/CMakeLists.txt @@ -525,4 +525,6 @@ else () endif () set_target_properties (use_disable_mdc_flushes PROPERTIES FOLDER test) -include (CMakeTests.cmake) +if (HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/test/CMakeVFDTests.cmake b/test/CMakeVFDTests.cmake index cf938f5..d4a5ddc 100644 --- a/test/CMakeVFDTests.cmake +++ b/test/CMakeVFDTests.cmake @@ -15,7 +15,7 @@ ### T E S T I N G ### ############################################################################## ############################################################################## -# included from CMakeTEsts.cmake +# included from CMakeTests.cmake set (VFD_LIST sec2 diff --git a/test/cache.c b/test/cache.c index a90f12b..349d048 100644 --- a/test/cache.c +++ b/test/cache.c @@ -19914,7 +19914,7 @@ check_auto_cache_resize(hbool_t cork_ageout, unsigned paged) /* NOTE: upper_hr_threshold MUST be type double (not float) * or the cache test will fail on 64-bit systems. */ - auto_size_ctl.upper_hr_threshold = H5_DOUBLE(0.999); /* for ease of testing */ + auto_size_ctl.upper_hr_threshold = 0.999; /* for ease of testing */ auto_size_ctl.decrement = 0.5f; diff --git a/test/cache_api.c b/test/cache_api.c index 87d0025..ca2e0ca 100644 --- a/test/cache_api.c +++ b/test/cache_api.c @@ -1664,7 +1664,7 @@ init_invalid_configs(void) { configs[13].lower_hr_threshold = 1.00000001f; /* 14 -- increment too small */ - configs[14].increment = H5_DOUBLE(0.999999999999); + configs[14].increment = 0.999999999999; /* 15 -- invalid flash_incr_mode */ configs[15].flash_incr_mode = (enum H5C_cache_flash_incr_mode)-1; @@ -1697,7 +1697,7 @@ init_invalid_configs(void) { /* 23 -- decrement too big */ configs[23].decr_mode = H5C_decr__threshold; - configs[23].decrement = H5_DOUBLE(1.0000000001); + configs[23].decrement = 1.0000000001; /* 24 -- epochs_before_eviction too small */ configs[24].epochs_before_eviction = 0; @@ -1709,13 +1709,13 @@ init_invalid_configs(void) { configs[26].empty_reserve = -0.0000000001f; /* 27 -- empty_reserve too big */ - configs[27].empty_reserve = H5_DOUBLE(1.00000000001); + configs[27].empty_reserve = 1.00000000001; /* 28 -- upper_hr_threshold too small */ configs[28].upper_hr_threshold = -0.000000001f; /* 29 -- upper_hr_threshold too big */ - configs[29].upper_hr_threshold = H5_DOUBLE(1.00000001); + configs[29].upper_hr_threshold = 1.00000001; /* 30 -- upper_hr_threshold <= lower_hr_threshold */ configs[30].lower_hr_threshold = 0.9f; diff --git a/test/cache_common.c b/test/cache_common.c index f977c3c..038a0ed 100644 --- a/test/cache_common.c +++ b/test/cache_common.c @@ -17,6 +17,7 @@ * This file contains common code for tests of the cache * implemented in H5C.c */ +#include "H5private.h" #include "H5CXprivate.h" /* API Contexts */ #include "H5MMprivate.h" @@ -553,7 +554,7 @@ addr_to_type_and_index(haddr_t addr, *------------------------------------------------------------------------- */ static herr_t -get_initial_load_size(void *udata, size_t *image_length, int32_t entry_type) +get_initial_load_size(void *udata, size_t *image_length, int32_t H5_ATTR_NDEBUG_UNUSED entry_type) { test_entry_t *entry; test_entry_t *base_addr; @@ -663,7 +664,7 @@ notify_get_initial_load_size(void *udata, size_t *image_length) */ static herr_t get_final_load_size(const void H5_ATTR_UNUSED *image, size_t H5_ATTR_UNUSED image_len, - void *udata, size_t *actual_len, int32_t entry_type) + void *udata, size_t *actual_len, int32_t H5_ATTR_NDEBUG_UNUSED entry_type) { test_entry_t *entry; test_entry_t *base_addr; @@ -723,7 +724,8 @@ variable_get_final_load_size(const void *image, size_t image_len, */ static htri_t -verify_chksum(const void H5_ATTR_UNUSED *image, size_t H5_ATTR_UNUSED len, void *udata, int32_t entry_type) +verify_chksum(const void H5_ATTR_UNUSED *image, size_t H5_ATTR_UNUSED len, void *udata, + int32_t H5_ATTR_NDEBUG_UNUSED entry_type) { test_entry_t *entry; test_entry_t *base_addr; @@ -776,8 +778,8 @@ variable_verify_chksum(const void *image, size_t len, void *udata) *------------------------------------------------------------------------- */ static void * -deserialize(const void *image, size_t len, void *udata, hbool_t *dirty, - int32_t entry_type) +deserialize(const void *image, size_t H5_ATTR_NDEBUG_UNUSED len, void *udata, hbool_t *dirty, + int32_t H5_ATTR_NDEBUG_UNUSED entry_type) { test_entry_t *entry; test_entry_t *base_addr; @@ -933,12 +935,10 @@ notify_deserialize(const void *image, size_t len, void *udata, hbool_t *dirty) *------------------------------------------------------------------------- */ herr_t -image_len(const void *thing, size_t *image_length, int32_t entry_type) +image_len(const void *thing, size_t *image_length, int32_t H5_ATTR_NDEBUG_UNUSED entry_type) { const test_entry_t *entry; - test_entry_t *base_addr; int32_t type; - int32_t idx; HDassert(thing); HDassert(image_length); @@ -948,14 +948,12 @@ image_len(const void *thing, size_t *image_length, int32_t entry_type) HDassert(entry->self == entry); type = entry->type; - idx = entry->index; HDassert((type >= 0) && (type < NUMBER_OF_ENTRY_TYPES)); HDassert(type == entry_type); - HDassert((idx >= 0) && (idx <= max_indices[type])); + HDassert((entry->index >= 0) && (entry->index <= max_indices[type])); - base_addr = entries[type]; - HDassert(entry == &(base_addr[idx])); + HDassert(entry == &(entries[type][entry->index])); if(type != VARIABLE_ENTRY_TYPE) HDassert(entry->size == entry_sizes[type]); @@ -1055,18 +1053,15 @@ notify_image_len(const void *thing, size_t *image_length) *------------------------------------------------------------------------- */ herr_t -pre_serialize(H5F_t *f, +pre_serialize(H5F_t H5_ATTR_NDEBUG_UNUSED *f, void *thing, - haddr_t addr, - size_t len, + haddr_t H5_ATTR_NDEBUG_UNUSED addr, + size_t H5_ATTR_NDEBUG_UNUSED len, haddr_t *new_addr_ptr, size_t *new_len_ptr, unsigned *flags_ptr) { test_entry_t *entry; - test_entry_t *base_addr; - int32_t type; - int32_t idx; int32_t i; HDassert(f); @@ -1086,16 +1081,9 @@ pre_serialize(H5F_t *f, /* shouldn't serialize the entry unless it is dirty */ HDassert(entry->is_dirty); - - type = entry->type; - idx = entry->index; - - HDassert((type >= 0) && (type < NUMBER_OF_ENTRY_TYPES)); - HDassert((idx >= 0) && (idx <= max_indices[type])); - - base_addr = entries[type]; - - HDassert(entry == &(base_addr[idx])); + HDassert((entry->type >= 0) && (entry->type < NUMBER_OF_ENTRY_TYPES)); + HDassert((entry->index >= 0) && (entry->index <= max_indices[entry->type])); + HDassert(entry == &(entries[entry->type][entry->index])); HDassert(entry->num_flush_ops >= 0); HDassert(entry->num_flush_ops < MAX_FLUSH_OPS); @@ -1307,9 +1295,7 @@ herr_t serialize(const H5F_t H5_ATTR_UNUSED *f, void *image_ptr, size_t len, void *thing) { test_entry_t *entry; - test_entry_t *base_addr; int32_t type; - int32_t idx; HDassert(image_ptr); HDassert(thing); @@ -1323,14 +1309,11 @@ serialize(const H5F_t H5_ATTR_UNUSED *f, void *image_ptr, size_t len, void *thin HDassert(entry->is_dirty); type = entry->type; - idx = entry->index; HDassert((type >= 0) && (type < NUMBER_OF_ENTRY_TYPES)); - HDassert((idx >= 0) && (idx <= max_indices[type])); + HDassert((entry->index >= 0) && (entry->index <= max_indices[type])); - base_addr = entries[type]; - - HDassert(entry == &(base_addr[idx])); + HDassert(entry == &(entries[type][entry->index])); HDassert(entry->num_flush_ops >= 0); HDassert(entry->num_flush_ops < MAX_FLUSH_OPS); @@ -1461,21 +1444,19 @@ notify_serialize(const H5F_t H5_ATTR_UNUSED *f, void *image_ptr, size_t len, *------------------------------------------------------------------------- */ static herr_t -notify(H5C_notify_action_t action, void *thing, int32_t entry_type) +notify(H5C_notify_action_t action, void *thing, int32_t H5_ATTR_NDEBUG_UNUSED entry_type) { test_entry_t *entry; - test_entry_t *base_addr; HDassert(thing); entry = (test_entry_t *)thing; - base_addr = entries[entry->type]; HDassert(entry->index >= 0); HDassert(entry->index <= max_indices[entry->type]); HDassert((entry->type >= 0) && (entry->type < NUMBER_OF_ENTRY_TYPES)); HDassert(entry->type == entry_type); - HDassert(entry == &(base_addr[entry->index])); + HDassert(entry == &(entries[entry->type][entry->index])); HDassert(entry == entry->self); if(!(action == H5C_NOTIFY_ACTION_ENTRY_DIRTIED && entry->action == TEST_ENTRY_ACTION_MOVE)) HDassert(entry->header.addr == entry->addr); @@ -1540,18 +1521,14 @@ notify_notify(H5C_notify_action_t action, void *thing) *------------------------------------------------------------------------- */ herr_t -free_icr(test_entry_t *entry, int32_t entry_type) +free_icr(test_entry_t *entry, int32_t H5_ATTR_NDEBUG_UNUSED entry_type) { - test_entry_t *base_addr; - HDassert(entry); - base_addr = entries[entry->type]; - HDassert(entry->type == entry_type); HDassert(entry->index >= 0); HDassert(entry->index <= max_indices[entry->type]); - HDassert(entry == &(base_addr[entry->index])); + HDassert(entry == &(entries[entry->type][entry->index])); HDassert(entry == entry->self); HDassert(entry->cache_ptr != NULL); HDassert(entry->cache_ptr->magic == H5C__H5C_T_MAGIC); diff --git a/test/cache_tagging.c b/test/cache_tagging.c index 7ce4e88..cf0cd8d 100644 --- a/test/cache_tagging.c +++ b/test/cache_tagging.c @@ -24,6 +24,7 @@ #include "H5CXprivate.h" /* API Contexts */ #include "H5HLprivate.h" +#include "H5VLnative_private.h" /* Native VOL connector */ /* ============ */ /* Test Defines */ @@ -374,14 +375,15 @@ error: static int get_object_header_tag(hid_t loc_id, haddr_t *tag) { - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ /* Retrieve the info for the object */ - if(H5Oget_info2(loc_id, &oinfo, H5O_INFO_ALL) < 0) + if(H5Oget_info3(loc_id, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR; /* Set the tag to return */ - *tag = oinfo.addr; + if(H5VLnative_token_to_addr(loc_id, oinfo.token, tag) < 0) + TEST_ERROR; return 0; @@ -439,7 +441,9 @@ check_file_creation_tags(hid_t fcpl_id, int type) { /* Variable Declarations */ hid_t fid = -1; /* File Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose test outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t fapl = -1; /* File access prop list */ haddr_t root_tag = 0; haddr_t sbe_tag = 0; @@ -526,7 +530,9 @@ check_file_open_tags(hid_t fcpl, int type) { /* Variable Declarations */ hid_t fid = -1; /* File Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t fapl = -1; /* File access prop list */ haddr_t root_tag; /* Root Group Tag */ haddr_t sbe_tag; /* Sblock Extension Tag */ @@ -639,7 +645,9 @@ check_group_creation_tags(void) /* Variable Declarations */ hid_t fid = -1; /* File Identifier */ hid_t gid = -1; /* Group Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t fapl = -1; /* File access prop list */ haddr_t root_tag = HADDR_UNDEF; /* Root Group Tag */ haddr_t g_tag; /* Group Tag */ @@ -740,7 +748,9 @@ check_multi_group_creation_tags(void) /* Variable Declarations */ hid_t fid = -1; /* File Identifier */ hid_t gid = -1; /* Group Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ char gname[16]; /* group name buffer */ int i = 0; /* iterator */ hid_t fapl = -1; /* File access prop list */ @@ -869,7 +879,9 @@ check_link_iteration_tags(void) hid_t fid = -1; /* File Identifier */ hid_t sid = -1; /* Group Identifier */ hid_t did = -1; /* Group Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ int i = 0; /* iterator */ haddr_t root_tag = 0; /* Root Group Tag Value */ char dsetname[500]; /* Name of dataset */ @@ -989,7 +1001,9 @@ check_dense_attribute_tags(void) hid_t sid = -1; /* Group Identifier */ hid_t did = -1; /* Group Identifier */ hid_t dcpl = -1; /* Group Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ int i = 0; /* iterator */ hid_t fapl = -1; /* File access property list */ haddr_t d_tag = 0; /* Dataset tag value */ @@ -1171,7 +1185,9 @@ check_group_open_tags(void) /* Variable Declarations */ hid_t fid = -1; /* File Identifier */ hid_t gid = -1; /* Group Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file output */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t fapl = -1; /* File access prop list */ haddr_t root_tag = HADDR_UNDEF; haddr_t g_tag; @@ -1280,7 +1296,9 @@ check_attribute_creation_tags(hid_t fcpl, int type) hid_t aid = -1; /* Attribute Identifier */ hid_t gid = -1; /* Group Identifier */ hid_t sid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t fapl = -1; /* File access prop list */ haddr_t root_tag = 0; /* Root group tag */ haddr_t g_tag = 0; @@ -1414,7 +1432,9 @@ check_attribute_open_tags(hid_t fcpl, int type) hid_t aid = -1; /* Attribute Identifier */ hid_t gid = -1; /* Group Identifier */ hid_t sid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t fapl = -1; /* File access prop list */ haddr_t root_tag = 0; haddr_t g_tag = 0; @@ -1551,7 +1571,9 @@ check_attribute_rename_tags(hid_t fcpl, int type) hid_t gid = -1; /* Group Identifier */ hid_t aid = -1; /* Attribute Identifier */ hid_t sid = -1; /* Dataset Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ int *data = NULL; /* data buffer */ int i,j,k = 0; /* iterators */ hid_t fapl = -1; /* File access prop list */ @@ -1726,7 +1748,9 @@ check_attribute_delete_tags(hid_t fcpl, int type) hid_t gid = -1; /* Group Identifier */ hid_t aid = -1; /* Attribute Identifier */ hid_t sid = -1; /* Dataset Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ int *data = NULL; /* data buffer */ int i,j,k = 0; /* iterators */ hid_t fapl = -1; /* File access prop list */ @@ -1892,7 +1916,9 @@ check_dataset_creation_tags(hid_t fcpl, int type) hid_t fid = -1; /* File Identifier */ hid_t did = -1; /* Dataset Identifier */ hid_t sid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t dcpl = -1; /* dataset creation pl */ hsize_t cdims[2] = {1,1}; /* chunk dimensions */ int fillval = 0; @@ -2025,7 +2051,9 @@ check_dataset_creation_earlyalloc_tags(hid_t fcpl, int type) hid_t fid = -1; /* File Identifier */ hid_t did = -1; /* Dataset Identifier */ hid_t sid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t dcpl = -1; /* dataset creation pl */ hsize_t cdims[2] = {1,1}; /* chunk dimensions */ int fillval = 0; @@ -2162,7 +2190,9 @@ check_dataset_open_tags(void) hid_t fid = -1; /* File Identifier */ hid_t did = -1; /* Dataset Identifier */ hid_t sid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t dcpl = -1; /* dataset creation pl */ hsize_t cdims[2] = {1,1}; /* chunk dimensions */ int fillval = 0; @@ -2288,7 +2318,9 @@ check_dataset_write_tags(void) hid_t fid = -1; /* File Identifier */ hid_t did = -1; /* Dataset Identifier */ hid_t sid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t dcpl = -1; /* dataset creation pl */ hsize_t cdims[2] = {1,1}; /* chunk dimensions */ int fillval = 0; @@ -2430,7 +2462,9 @@ check_attribute_write_tags(hid_t fcpl, int type) hid_t gid = -1; /* Group Identifier */ hid_t aid = -1; /* Attribute Identifier */ hid_t sid = -1; /* Dataset Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ int *data = NULL; /* data buffer */ int i,j,k = 0; /* iterators */ hid_t fapl = -1; /* File access prop list */ @@ -2583,7 +2617,9 @@ check_dataset_read_tags(void) hid_t fid = -1; /* File Identifier */ hid_t did = -1; /* Dataset Identifier */ hid_t sid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t dcpl = -1; /* dataset creation pl */ hsize_t cdims[2] = {1,1}; /* chunk dimensions */ int fillval = 0; @@ -2720,7 +2756,9 @@ check_dataset_size_retrieval(void) hid_t fid = -1; /* File Identifier */ hid_t did = -1; /* Dataset Identifier */ hid_t sid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t dcpl = -1; /* dataset creation pl */ hsize_t cdims[2] = {1,1}; /* chunk dimensions */ int fillval = 0; @@ -2859,7 +2897,9 @@ check_dataset_extend_tags(void) hid_t fid = -1; /* File Identifier */ hid_t did = -1; /* Dataset Identifier */ hid_t sid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t dcpl = -1; /* dataset creation pl */ hsize_t cdims[2] = {1,1}; /* chunk dimensions */ int fillval = 0; @@ -2996,11 +3036,13 @@ check_object_info_tags(void) /* Variable Declarations */ hid_t fid = -1; /* File Identifier */ hid_t gid = -1; /* Group Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file output */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t fapl = -1; /* File access prop list */ haddr_t root_tag = HADDR_UNDEF; haddr_t g_tag; - H5O_info_t oinfo; /* Object info struct */ + H5O_native_info_t ninfo; /* Native object info struct */ /* Testing Macro */ TESTING("tag application during object info retrieval"); @@ -3040,7 +3082,10 @@ check_object_info_tags(void) /* Get information on an object by name */ /* ===================================== */ - if ( H5Oget_info_by_name2(fid, GROUPNAME, &oinfo, H5O_INFO_ALL, H5P_DEFAULT) < 0 ) TEST_ERROR; + /* Even though we do nothing with this, touching the internal + * data structures is needed for the test to pass. + */ + if ( H5Oget_native_info_by_name(fid, GROUPNAME, &ninfo, H5O_NATIVE_INFO_ALL, H5P_DEFAULT) < 0 ) TEST_ERROR; /* =================================== */ /* Verification of Metadata Tag Values */ @@ -3105,7 +3150,9 @@ check_object_copy_tags(void) /* Variable Declarations */ hid_t fid = -1; /* File Identifier */ hid_t gid = -1; /* Group Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file output */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t fapl = -1; /* File access prop list */ haddr_t root_tag = HADDR_UNDEF; haddr_t g_tag; @@ -3226,7 +3273,9 @@ check_link_removal_tags(hid_t fcpl, int type) hid_t did = -1; /* Dataset Identifier */ hid_t sid = -1; /* Dataspace Identifier */ hid_t gid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t dcpl = -1; /* dataset creation pl */ hsize_t cdims[2] = {1,1}; /* chunk dimensions */ int fillval = 0; @@ -3385,7 +3434,9 @@ check_link_getname_tags(void) hid_t did = -1; /* Dataset Identifier */ hid_t sid = -1; /* Dataspace Identifier */ hid_t gid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t dcpl = -1; /* dataset creation pl */ hsize_t cdims[2] = {1,1}; /* chunk dimensions */ int fillval = 0; @@ -3534,7 +3585,9 @@ check_external_link_creation_tags(void) hid_t fid = -1; /* File Identifier */ hid_t fid2 = -1; /* File Identifier */ hid_t gid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ hid_t fapl = -1; /* File access prop list */ haddr_t root_tag = 0; @@ -3640,7 +3693,10 @@ check_external_link_open_tags(void) hid_t fid2 = -1; /* File Identifier */ hid_t gid = -1; /* Dataspace Identifier */ hid_t xid = -1; /* Dataspace Identifier */ +#ifndef NDEBUG int verbose = FALSE; /* verbose file outout */ +#endif /* NDEBUG */ /* end debugging functions */ + H5O_native_info_t ninfo; /* Native object info struct */ hid_t fapl = -1; /* File access prop list */ haddr_t root_tag = 0; haddr_t root2_tag = 0; @@ -3694,6 +3750,11 @@ check_external_link_open_tags(void) if ( (fid2 = H5Iget_file_id(xid)) < 0) TEST_ERROR; if ( get_object_header_tag(xid, &link_tag) < 0 ) TEST_ERROR; + /* Even though we do nothing with this, touching the internal + * data structures is needed for the test to pass. + */ + if ( H5Oget_native_info(xid, &ninfo, H5O_NATIVE_INFO_ALL) < 0 ) TEST_ERROR; + /* =================================== */ /* Verification of Metadata Tag Values */ /* =================================== */ @@ -3836,12 +3897,13 @@ check_invalid_tag_application(void) return 0; -error: #if H5C_DO_TAGGING_SANITY_CHECKS +error: if(api_ctx_pushed) H5CX_pop(); -#endif /* H5C_DO_TAGGING_SANITY_CHECKS */ return 1; +#endif /* H5C_DO_TAGGING_SANITY_CHECKS */ + } /* check_invalid_tag_application */ diff --git a/test/chunk_info.c b/test/chunk_info.c index 057991c..0afff66 100644 --- a/test/chunk_info.c +++ b/test/chunk_info.c @@ -119,7 +119,7 @@ const char *FILENAME[] = { #define INVALID_CHK_INDEX 5 /* For compressed data */ -#define DEFLATE_SIZE_ADJUST(s) (ceil(((double)(s))*1.001)+12) +#define DEFLATE_SIZE_ADJUST(s) (ceil(((double)(s))*1.001)+12.0) /* For use in error reporting */ #define MSG_CHK_ADDR "Chunk address should not be HADDR_UNDEF because of H5D_ALLOC_TIME_EARLY." diff --git a/test/cork.c b/test/cork.c index 78b6b01..125c53e 100644 --- a/test/cork.c +++ b/test/cork.c @@ -102,7 +102,7 @@ verify_old_dset_cork(void) int **buf = NULL; /* Data bufer (pointers to fake 2D array) */ int *buf_data = NULL; /* Data buffer (actual data) */ int i = 0, j = 0; /* Local index variables */ - H5O_info_t oinfo, oinfo2, oinfo3; /* Object metadata information */ + H5O_info2_t oinfo, oinfo2, oinfo3; /* Object metadata information */ hsize_t dims2[2] = {8, 16}; /* Dataset dimension sizes */ /* Testing Macro */ @@ -127,7 +127,7 @@ verify_old_dset_cork(void) TEST_ERROR /* Get dataset object header address: DSET_BT1 */ - if(H5Oget_info2(did, &oinfo, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_BT1 */ @@ -135,7 +135,7 @@ verify_old_dset_cork(void) TEST_ERROR /* Verify cork status */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, TRUE) < 0) TEST_ERROR /* Set up data array */ @@ -156,7 +156,7 @@ verify_old_dset_cork(void) TEST_ERROR /* Verify the cork status for DSET_BT1 */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, TRUE) < 0) TEST_ERROR /* Create compact dataset: DSET_COMPACT */ @@ -172,7 +172,7 @@ verify_old_dset_cork(void) FAIL_STACK_ERROR /* Get dataset object address */ - if(H5Oget_info2(did2, &oinfo2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_COMPACT */ @@ -180,7 +180,7 @@ verify_old_dset_cork(void) TEST_ERROR /* Verify cork status */ - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, TRUE) < 0) TEST_ERROR /* Closing */ @@ -220,7 +220,7 @@ verify_old_dset_cork(void) FAIL_STACK_ERROR /* Get dataset object address: DSET_CONTIG */ - if(H5Oget_info2(did3, &oinfo3, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did3, &oinfo3, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_CONTIG */ @@ -228,11 +228,11 @@ verify_old_dset_cork(void) TEST_ERROR /* Verify the cork status for DSET_CONTIG */ - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, TRUE) < 0) TEST_ERROR /* Verify the cork status for DSET_BT1 */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, FALSE) < 0) TEST_ERROR /* Un-cork the dataset: DSET_CONTIG */ @@ -240,7 +240,7 @@ verify_old_dset_cork(void) TEST_ERROR /* Verify the cork status for DSET_CONTIG */ - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, FALSE) < 0) TEST_ERROR /* Closing */ @@ -307,7 +307,7 @@ verify_obj_dset_cork(hbool_t swmr) int i = 0; /* Local index variable */ hsize_t dim[1] = {100}; /* Dataset dimension size */ hsize_t chunk_dim[1] = {7}; /* Dataset chunk dimension size */ - H5O_info_t oinfo, oinfo2; /* Object metadata information */ + H5O_info2_t oinfo, oinfo2; /* Object metadata information */ char attrname[500]; /* Name of attribute */ unsigned flags; /* File access flags */ @@ -340,11 +340,11 @@ verify_obj_dset_cork(hbool_t swmr) TEST_ERROR /* Get dataset object header address */ - if(H5Oget_info2(did, &oinfo, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR /* Verify cork status of the dataset: DSET */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, FALSE) < 0) TEST_ERROR /* Cork the dataset: DSET */ @@ -356,7 +356,7 @@ verify_obj_dset_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the dataset: DSET */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, TRUE) < 0) TEST_ERROR /* Close the attribute */ @@ -364,7 +364,7 @@ verify_obj_dset_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the dataset: DSET */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, TRUE) < 0) TEST_ERROR /* Create dcpl */ @@ -383,7 +383,7 @@ verify_obj_dset_cork(hbool_t swmr) TEST_ERROR /* Get dataset object header address */ - if(H5Oget_info2(did2, &oinfo2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_NONE */ @@ -402,7 +402,7 @@ verify_obj_dset_cork(hbool_t swmr) } /* end for */ /* Verify cork status of the dataset: DSET_NONE */ - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, TRUE) < 0) TEST_ERROR /* Closing */ @@ -431,7 +431,7 @@ verify_obj_dset_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the dataset: DSET */ - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, FALSE) < 0) TEST_ERROR /* Open the attribute attached to the dataset object: DSET_NONE */ @@ -443,7 +443,7 @@ verify_obj_dset_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the dataset: DSET_NONE */ - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, TRUE) < 0) TEST_ERROR /* Close the attribute */ @@ -451,7 +451,7 @@ verify_obj_dset_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the dataset: DSET */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, TRUE) < 0) TEST_ERROR /* Closing */ @@ -510,8 +510,8 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) int **buf = NULL; /* Data bufer (pointers to fake 2D array) */ int *buf_data = NULL; /* Data buffer (actual data) */ int i = 0, j = 0; /* Local index variables */ - H5O_info_t oinfo, oinfo2, oinfo3; /* Object metadata information */ - unsigned flags; /* File access flags */ + H5O_info2_t oinfo, oinfo2, oinfo3; /* Object metadata information */ + unsigned flags; /* File access flags */ /* Testing Macro */ if(swmr) { @@ -559,7 +559,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Get dataset object header address: DSET_EA */ - if(H5Oget_info2(did, &oinfo, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_EA */ @@ -567,7 +567,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Verify cork status */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, TRUE) < 0) TEST_ERROR /* Create chunked dataset with fixed array indexing: DSET_FA */ @@ -577,7 +577,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Get dataset object header address: DSET_FA */ - if(H5Oget_info2(did2, &oinfo2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_FA */ @@ -589,11 +589,11 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Verify the cork status for DSET_FA */ - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, TRUE) < 0) TEST_ERROR /* Verify the cork status for DSET_EA */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, FALSE) < 0) TEST_ERROR /* Create chunked dataset with v2-Btree indexing */ @@ -604,7 +604,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Get dataset object header address: DSET_BT2 */ - if(H5Oget_info2(did3, &oinfo3, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did3, &oinfo3, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET_BT2 */ @@ -612,7 +612,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Verify the cork status for DSET_BT2 */ - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, TRUE) < 0) TEST_ERROR /* Closing */ @@ -663,7 +663,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Verify the cork status for DSET_EA */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, FALSE) < 0) TEST_ERROR /* Open and write to the dataset: DSET_FA */ @@ -677,7 +677,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Verify the cork status for DSET_FA */ - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, TRUE) < 0) TEST_ERROR /* Open and write to the dataset: DSET_BT2 */ @@ -687,7 +687,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Verify the cork status for DSET_BT2 */ - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, FALSE) < 0) TEST_ERROR /* Cork the dataset: DSET_BT2 */ @@ -695,7 +695,7 @@ verify_dset_cork(hbool_t swmr, hbool_t new_format) TEST_ERROR /* Verify the cork status for DSET_BT2 */ - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, TRUE) < 0) TEST_ERROR /* Closing */ @@ -757,11 +757,11 @@ verify_group_cork(hbool_t swmr) hid_t fid = -1; /* File ID */ hid_t fapl = -1; /* File access property list */ hid_t gid = -1, gid2 = -1, gid3 = -1; /* Group IDs */ - H5O_info_t oinfo, oinfo2, oinfo3; /* Object metadata information */ - hid_t aid; /* Attribute ID */ - hid_t sid; /* Dataspace ID */ + H5O_info2_t oinfo, oinfo2, oinfo3; /* Object metadata information */ + hid_t aid; /* Attribute ID */ + hid_t sid; /* Dataspace ID */ char attrname[500]; /* Name of attribute */ - unsigned flags; /* File access flags */ + unsigned flags; /* File access flags */ int i = 0; /* Local index variable */ /* Testing Macro */ @@ -798,19 +798,19 @@ verify_group_cork(hbool_t swmr) TEST_ERROR /* Get group object header addresses */ - if(H5Oget_info2(gid, &oinfo, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(gid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info2(gid2, &oinfo2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(gid2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info2(gid3, &oinfo3, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(gid3, &oinfo3, H5O_INFO_BASIC) < 0) TEST_ERROR /* Verify cork status of the groups */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, FALSE) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, TRUE) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, FALSE) < 0) TEST_ERROR /* Close the second group: GRP2 */ @@ -822,7 +822,7 @@ verify_group_cork(hbool_t swmr) FAIL_STACK_ERROR /* Verify cork status of the second group: GRP2 */ - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, FALSE) < 0) TEST_ERROR /* Closing */ @@ -863,7 +863,7 @@ verify_group_cork(hbool_t swmr) if(i == 3) { if(H5Odisable_mdc_flushes(gid3) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, TRUE) < 0) TEST_ERROR } if(H5Aclose(aid) < 0) @@ -871,7 +871,7 @@ verify_group_cork(hbool_t swmr) } /* end for */ /* Verify cork status of the third group: GRP3 */ - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, TRUE) < 0) TEST_ERROR /* Closing */ @@ -925,12 +925,12 @@ verify_named_cork(hbool_t swmr) hid_t fapl = -1; /* File access property list */ hid_t tid = -1, tid2 = -1, tid3 = -1; /* Datatype IDs */ hid_t gid = -1, gid2 = -1; /* Group IDs */ - H5O_info_t oinfo, oinfo2, oinfo3, oinfo4; /* Object metadata information */ - hid_t aid = -1; /* Attribute ID */ - hid_t sid; /* Dataspace ID */ - hid_t did; /* Dataset ID */ + H5O_info2_t oinfo, oinfo2, oinfo3, oinfo4; /* Object metadata information */ + hid_t aid = -1; /* Attribute ID */ + hid_t sid; /* Dataspace ID */ + hid_t did; /* Dataset ID */ char attrname[500]; /* Name of attribute */ - unsigned flags; /* File access flags */ + unsigned flags; /* File access flags */ int i = 0; /* Local index variable */ /* Testing Macro */ @@ -987,19 +987,19 @@ verify_named_cork(hbool_t swmr) TEST_ERROR /* Get named datatype object header addresses */ - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info2(tid2, &oinfo2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(tid2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info2(tid3, &oinfo3, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(tid3, &oinfo3, H5O_INFO_BASIC) < 0) TEST_ERROR /* Verify cork status of the named datatypes */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, TRUE) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, FALSE) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, TRUE) < 0) TEST_ERROR /* Close the datatypes */ @@ -1019,11 +1019,11 @@ verify_named_cork(hbool_t swmr) FAIL_STACK_ERROR /* Verify cork status of the named datatypes */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, FALSE) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, FALSE) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, FALSE) < 0) TEST_ERROR /* Closing */ @@ -1079,7 +1079,7 @@ verify_named_cork(hbool_t swmr) if(i == 3) { if(H5Odisable_mdc_flushes(tid3) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, TRUE) < 0) TEST_ERROR } if(H5Aclose(aid) < 0) @@ -1091,7 +1091,7 @@ verify_named_cork(hbool_t swmr) FAIL_STACK_ERROR /* Get dataset object header address */ - if(H5Oget_info2(did, &oinfo4, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did, &oinfo4, H5O_INFO_BASIC) < 0) TEST_ERROR /* Cork the dataset: DSET */ @@ -1099,20 +1099,20 @@ verify_named_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the datatype: DT */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, FALSE) < 0) TEST_ERROR /* Verify cork status of the datatype: DT2 */ - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, TRUE) < 0) TEST_ERROR /* Verify cork status of the datatype: DT3 */ - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, TRUE) < 0) TEST_ERROR /* Un-cork the datatype: DT3 */ if(H5Oenable_mdc_flushes(tid3) < 0) TEST_ERROR /* Verify cork status of the datatype: DT3 */ - if(H5C__verify_cork_tag_test(fid, oinfo3.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo3.token, FALSE) < 0) TEST_ERROR /* Cork the datatype: DT */ @@ -1120,14 +1120,14 @@ verify_named_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the datatype: DT */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, TRUE) < 0) TEST_ERROR /* Verify cork status of the datatype: DT2 */ - if(H5C__verify_cork_tag_test(fid, oinfo2.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo2.token, TRUE) < 0) TEST_ERROR /* Verify cork status of the dataset: DSET */ - if(H5C__verify_cork_tag_test(fid, oinfo4.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo4.token, TRUE) < 0) TEST_ERROR /* Close the dataset */ @@ -1135,11 +1135,11 @@ verify_named_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the datatype: DT */ - if(H5C__verify_cork_tag_test(fid, oinfo.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo.token, TRUE) < 0) TEST_ERROR /* Verify cork status of the dataset: DSET */ - if(H5C__verify_cork_tag_test(fid, oinfo4.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid, oinfo4.token, FALSE) < 0) TEST_ERROR /* Closing */ @@ -1206,10 +1206,10 @@ verify_multiple_cork(hbool_t swmr) hid_t aidd1 = -1, aidd2 = -1; /* Attribute ID */ hid_t aidt1 = -1, aidt2 = -1; /* Attribute ID */ hid_t sid = -1; /* Dataspace ID */ - H5O_info_t oinfo1, oinfo2, oinfo3; /* Object metadata information */ - hsize_t dim[1] = {5}; /* Dimension sizes */ - unsigned flags; /* File access flags */ - hbool_t corked; /* Cork status */ + H5O_info2_t oinfo1, oinfo2, oinfo3; /* Object metadata information */ + hsize_t dim[1] = {5}; /* Dimension sizes */ + unsigned flags; /* File access flags */ + hbool_t corked; /* Cork status */ herr_t ret; /* Return value */ /* Testing Macro */ @@ -1305,9 +1305,9 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the group: gid2 */ - if(H5Oget_info2(gid2, &oinfo1, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(gid2, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid2, oinfo1.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid2, oinfo1.token, TRUE) < 0) TEST_ERROR /* Check cork status of the group: gid1 */ @@ -1333,9 +1333,9 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the dataset: did1 */ - if(H5Oget_info2(did1, &oinfo2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did1, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid1, oinfo2.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid1, oinfo2.token, TRUE) < 0) TEST_ERROR /* Check cork status of the dataset: did2 */ @@ -1361,9 +1361,9 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the datatype: tid2 */ - if(H5Oget_info2(tid2, &oinfo3, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(tid2, &oinfo3, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid2, oinfo3.addr, TRUE) < 0) + if(H5C__verify_cork_tag_test(fid2, oinfo3.token, TRUE) < 0) TEST_ERROR /* Check cork status of the datatype: tid1 */ @@ -1377,9 +1377,9 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the group: gid1 */ - if(H5Oget_info2(gid1, &oinfo1, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(gid1, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid1, oinfo1.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid1, oinfo1.token, FALSE) < 0) TEST_ERROR /* Check cork status of the group: gid2 */ @@ -1399,7 +1399,7 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the group: gid1 */ - if(H5C__verify_cork_tag_test(fid1, oinfo1.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid1, oinfo1.token, FALSE) < 0) TEST_ERROR /* Close the group: gid1 */ @@ -1411,9 +1411,9 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the dataset: did2 */ - if(H5Oget_info2(did2, &oinfo2, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(did2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5C__verify_cork_tag_test(fid2, oinfo2.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid2, oinfo2.token, FALSE) < 0) TEST_ERROR /* Check cork status of the dataset: did1 */ @@ -1433,7 +1433,7 @@ verify_multiple_cork(hbool_t swmr) TEST_ERROR /* Verify cork status of the dataset: did1 */ - if(H5C__verify_cork_tag_test(fid1, oinfo2.addr, FALSE) < 0) + if(H5C__verify_cork_tag_test(fid1, oinfo2.token, FALSE) < 0) TEST_ERROR /* Close the dataset: did1 */ diff --git a/test/direct_chunk.c b/test/direct_chunk.c index 7b17043..2e6cc68 100644 --- a/test/direct_chunk.c +++ b/test/direct_chunk.c @@ -43,7 +43,7 @@ #define CHUNK_NX 4 #define CHUNK_NY 4 -#define DEFLATE_SIZE_ADJUST(s) (HDceil(((double)(s))*H5_DOUBLE(1.001))+H5_DOUBLE(12.0)) +#define DEFLATE_SIZE_ADJUST(s) (HDceil(((double)(s))*1.001)+12.0) /* Temporary filter IDs used for testing */ #define H5Z_FILTER_BOGUS1 305 @@ -661,20 +661,20 @@ filter_bogus1(unsigned int flags, size_t H5_ATTR_UNUSED cd_nelmts, size_t *buf_size, void **buf) { int *int_ptr=(int *)*buf; /* Pointer to the data values */ - ssize_t buf_left=(ssize_t)*buf_size; /* Amount of data buffer left to process */ + size_t buf_left=*buf_size; /* Amount of data buffer left to process */ if(flags & H5Z_FLAG_REVERSE) { /* read */ /* Substract the "add on" value to all the data values */ while(buf_left>0) { *int_ptr++ -= (int)ADD_ON; - buf_left -= (ssize_t)sizeof(int); + buf_left -= sizeof(int); } /* end while */ } /* end if */ else { /* write */ /* Add the "add on" value to all the data values */ while(buf_left>0) { *int_ptr++ += (int)ADD_ON; - buf_left -= (ssize_t)sizeof(int); + buf_left -= sizeof(int); } /* end while */ } /* end else */ @@ -698,20 +698,20 @@ filter_bogus2(unsigned int flags, size_t H5_ATTR_UNUSED cd_nelmts, size_t *buf_size, void **buf) { int *int_ptr=(int *)*buf; /* Pointer to the data values */ - ssize_t buf_left=(ssize_t)*buf_size; /* Amount of data buffer left to process */ + size_t buf_left=*buf_size; /* Amount of data buffer left to process */ if(flags & H5Z_FLAG_REVERSE) { /* read */ /* Substract the "add on" value to all the data values */ while(buf_left>0) { *int_ptr++ /= (int)FACTOR; - buf_left -= (ssize_t)sizeof(int); + buf_left -= sizeof(int); } /* end while */ } /* end if */ else { /* write */ /* Add the "add on" value to all the data values */ while(buf_left>0) { *int_ptr++ *= (int)FACTOR; - buf_left -= (ssize_t)sizeof(int); + buf_left -= sizeof(int); } /* end while */ } /* end else */ diff --git a/test/dsets.c b/test/dsets.c index a394210..9926f10 100644 --- a/test/dsets.c +++ b/test/dsets.c @@ -147,10 +147,12 @@ const char *FILENAME[] = { #define DSET_COPY_DCPL_NAME_1 "copy_dcpl_1" #define DSET_COPY_DCPL_NAME_2 "copy_dcpl_2" #define COPY_DCPL_EXTFILE_NAME "ext_file" +#ifndef H5_NO_DEPRECATED_SYMBOLS #define DSET_DEPREC_NAME "deprecated" #define DSET_DEPREC_NAME_CHUNKED "deprecated_chunked" #define DSET_DEPREC_NAME_COMPACT "deprecated_compact" #define DSET_DEPREC_NAME_FILTER "deprecated_filter" +#endif /* H5_NO_DEPRECATED_SYMBOLS */ /* Dataset names for testing Fixed Array Indexing */ #define DSET_FIXED_MAX "DSET_FIXED_MAX" @@ -176,7 +178,9 @@ const char *FILENAME[] = { #define H5Z_FILTER_CORRUPT 306 #define H5Z_FILTER_CAN_APPLY_TEST 307 #define H5Z_FILTER_SET_LOCAL_TEST 308 +#ifndef H5_NO_DEPRECATED_SYMBOLS #define H5Z_FILTER_DEPREC 309 +#endif /* H5_NO_DEPRECATED_SYMBOLS */ #define H5Z_FILTER_EXPAND 310 #define H5Z_FILTER_CAN_APPLY_TEST2 311 #define H5Z_FILTER_COUNT 312 @@ -272,10 +276,16 @@ const char *FILENAME[] = { /* Shared global arrays */ #define DSET_DIM1 100 #define DSET_DIM2 200 -int points[DSET_DIM1][DSET_DIM2], check[DSET_DIM1][DSET_DIM2]; -double points_dbl[DSET_DIM1][DSET_DIM2], check_dbl[DSET_DIM1][DSET_DIM2]; -size_t count_nbytes_read = 0; -size_t count_nbytes_written = 0; +int **points = NULL; +int *points_data = NULL; +double **points_dbl = NULL; +double *points_dbl_data = NULL; +int **check = NULL; +int *check_data = NULL; +double **check_dbl = NULL; +double *check_dbl_data = NULL; +size_t count_nbytes_read = 0; +size_t count_nbytes_written = 0; /* Temporary buffer dimensions */ #define DSET_TMP_DIM1 50 @@ -511,7 +521,8 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) void *tconv_buf = NULL; int f = -1; haddr_t offset; - int rdata[DSET_DIM1][DSET_DIM2]; + int **rdata = NULL; + int *rdata_bytes = NULL; TESTING("simple I/O"); @@ -519,6 +530,14 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) if(HDstrcmp(env_h5_drvr, "split") && HDstrcmp(env_h5_drvr, "multi") && HDstrcmp(env_h5_drvr, "family")) { h5_fixname(FILENAME[4], fapl, filename, sizeof filename); + /* Set up data array */ + if(NULL == (rdata_bytes = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (rdata = (int **)HDcalloc(DSET_DIM1, sizeof(rdata_bytes)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + rdata[i] = rdata_bytes + (i * DSET_DIM2); + /* Initialize the dataset */ for(i = n = 0; i < DSET_DIM1; i++) for(j = 0; j < DSET_DIM2; j++) @@ -548,7 +567,7 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) if(H5Dget_offset(dataset) != HADDR_UNDEF) goto error; /* Write the data to the dataset */ - if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, xfer, points) < 0) + if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, xfer, points_data) < 0) goto error; /* Test dataset address in file. Open the same file as a C file, seek @@ -557,7 +576,7 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) if((offset=H5Dget_offset(dataset))==HADDR_UNDEF) goto error; /* Read the dataset back */ - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, xfer, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, xfer, check_data) < 0) goto error; /* Check that the values read are the same as the values written */ @@ -581,7 +600,7 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) f = HDopen(filename, O_RDONLY); HDlseek(f, (off_t)offset, SEEK_SET); - if(HDread(f, rdata, sizeof(int)*DSET_DIM1*DSET_DIM2) < 0) + if(HDread(f, rdata_bytes, sizeof(int)*DSET_DIM1*DSET_DIM2) < 0) goto error; /* Check that the values read are the same as the values written */ @@ -600,6 +619,9 @@ test_simple_io(const char *env_h5_drvr, hid_t fapl) f = -1; HDfree(tconv_buf); + HDfree(rdata_bytes); + HDfree(rdata); + PASSED(); } /* end if */ else { @@ -620,8 +642,11 @@ error: if(H5Fclose(file) < 0) TEST_ERROR if(f > 0) HDclose(f); - if(tconv_buf) - HDfree(tconv_buf); + + HDfree(tconv_buf); + HDfree(rdata_bytes); + HDfree(rdata); + return FAIL; } /* end test_simple_io() */ @@ -644,7 +669,8 @@ test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) hsize_t dims[2]; int f = -1; haddr_t offset; - int rdata[DSET_DIM1][DSET_DIM2]; + int **rdata = NULL; + int *rdata_bytes = NULL; TESTING("dataset offset with user block"); @@ -652,6 +678,14 @@ test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) if(HDstrcmp(env_h5_drvr, "split") && HDstrcmp(env_h5_drvr, "multi") && HDstrcmp(env_h5_drvr, "family")) { h5_fixname(FILENAME[2], fapl, filename, sizeof filename); + /* Set up data array */ + if(NULL == (rdata_bytes = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (rdata = (int **)HDcalloc(DSET_DIM1, sizeof(rdata_bytes)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + rdata[i] = rdata_bytes + (i * DSET_DIM2); + if((fcpl=H5Pcreate(H5P_FILE_CREATE)) < 0) goto error; if(H5Pset_userblock(fcpl, (hsize_t)USER_BLOCK) < 0) goto error; if(new_format) @@ -675,7 +709,7 @@ test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) space = -1; /* Write the data to the dataset */ - if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0) + if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_data) < 0) goto error; /* Test dataset address in file. Open the same file as a C file, seek @@ -690,7 +724,7 @@ test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) f = HDopen(filename, O_RDONLY); HDlseek(f, (off_t)offset, SEEK_SET); - if(HDread(f, rdata, sizeof(int)*DSET_DIM1*DSET_DIM2) < 0) + if(HDread(f, rdata_bytes, sizeof(int)*DSET_DIM1*DSET_DIM2) < 0) goto error; /* Check that the values read are the same as the values written */ @@ -708,6 +742,9 @@ test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) HDclose(f); f = -1; + HDfree(rdata_bytes); + HDfree(rdata); + PASSED(); } /* end if */ else { @@ -728,6 +765,10 @@ error: if(H5Fclose(file) < 0) TEST_ERROR if(f > 0) HDclose(f); + + HDfree(rdata_bytes); + HDfree(rdata); + return FAIL; } /* end test_userblock_offset() */ @@ -1786,7 +1827,7 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, */ TESTING(" filters (uninitialized read)"); - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; for(i=0; i<(size_t)size[0]; i++) { @@ -1815,7 +1856,7 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, } } - if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, points) < 0) + if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, points_data) < 0) TEST_ERROR; if((*dset_size=H5Dget_storage_size(dataset))==0) TEST_ERROR; @@ -1833,25 +1874,25 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, /* Default behavior is failure when data is corrupted. */ /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; /* Callback decides to continue inspite data is corrupted. */ if(H5Pset_filter_callback(dxpl, filter_cb_cont, NULL) < 0) TEST_ERROR; - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Callback decides to fail when data is corrupted. */ if(H5Pset_filter_callback(write_dxpl, filter_cb_fail, NULL) < 0) TEST_ERROR; /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; } else { - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Check that the values read are the same as the values written */ @@ -1885,33 +1926,33 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, points[i][j] = (int)HDrandom (); } } - if(H5Dwrite (dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, points) < 0) + if(H5Dwrite (dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, points_data) < 0) TEST_ERROR; if(corrupted) { /* Default behavior is failure when data is corrupted. */ /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; /* Callback decides to continue inspite data is corrupted. */ if(H5Pset_filter_callback(dxpl, filter_cb_cont, NULL) < 0) TEST_ERROR; - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Callback decides to fail when data is corrupted. */ if(H5Pset_filter_callback(write_dxpl, filter_cb_fail, NULL) < 0) TEST_ERROR; /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; } else { /* Read the dataset back and check it */ - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Check that the values read are the same as the values written */ @@ -1946,13 +1987,13 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, /* Default behavior is failure when data is corrupted. */ /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status >= 0) TEST_ERROR; /* Callback decides to continue inspite data is corrupted. */ if(H5Pset_filter_callback(dxpl, filter_cb_cont, NULL) < 0) TEST_ERROR; - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Callback decides to fail when data is corrupted. */ @@ -1960,12 +2001,12 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status = H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status >= 0) TEST_ERROR; } /* end if */ else { - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Check that the values read are the same as the values written */ @@ -1999,32 +2040,32 @@ test_filter_internal(hid_t fid, const char *name, hid_t dcpl, int if_fletcher32, if(H5Sselect_hyperslab(sid, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) TEST_ERROR; /* (Use the "read" DXPL because partial I/O on corrupted data test needs to ignore errors during writing) */ - if(H5Dwrite (dataset, H5T_NATIVE_INT, sid, sid, dxpl, points) < 0) + if(H5Dwrite (dataset, H5T_NATIVE_INT, sid, sid, dxpl, points_data) < 0) TEST_ERROR; if(corrupted) { /* Default behavior is failure when data is corrupted. */ /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; /* Callback decides to continue inspite data is corrupted. */ if(H5Pset_filter_callback(dxpl, filter_cb_cont, NULL) < 0) TEST_ERROR; - if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check) < 0) + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl, check_data) < 0) TEST_ERROR; /* Callback decides to fail when data is corrupted. */ if(H5Pset_filter_callback(write_dxpl, filter_cb_fail, NULL) < 0) TEST_ERROR; /* (Use the "write" DXPL in order to make certain corruption is seen) */ H5E_BEGIN_TRY { - status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check); + status=H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, write_dxpl, check_data); } H5E_END_TRY; if(status>=0) TEST_ERROR; } else { - if(H5Dread (dataset, H5T_NATIVE_INT, sid, sid, dxpl, check) < 0) + if(H5Dread (dataset, H5T_NATIVE_INT, sid, sid, dxpl, check_data) < 0) TEST_ERROR; /* Check that the values read are the same as the values written */ @@ -2629,7 +2670,7 @@ test_missing_filter(hid_t file) } /* end if */ /* Write data */ - if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0) { + if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error writing dataset data\n",__LINE__); goto error; @@ -2658,7 +2699,7 @@ test_missing_filter(hid_t file) } /* end if */ /* Read data */ - if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0) { + if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error reading dataset data\n",__LINE__); goto error; @@ -2719,7 +2760,7 @@ test_missing_filter(hid_t file) /* Read data (should fail, since deflate filter is missing) */ H5E_BEGIN_TRY { - ret = H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check); + ret = H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_data); } H5E_END_TRY; if(ret>=0) { H5_FAILED(); @@ -3127,18 +3168,18 @@ test_nbit_double(hid_t file) */ double orig_data[2][5] = { { - H5_DOUBLE(1.6081706885101836e+60), - H5_DOUBLE(-255.32099170994480), - H5_DOUBLE(1.2677579992621376e-61), - H5_DOUBLE(64568.289448797700), - H5_DOUBLE(-1.0619721778839084e-75) + 1.6081706885101836e+60, + -255.32099170994480, + 1.2677579992621376e-61, + 64568.289448797700, + -1.0619721778839084e-75 }, { - H5_DOUBLE(2.1499497833454840e+56), - H5_DOUBLE(6.6562295504670740e-3), - H5_DOUBLE(-1.5747263393432150), - H5_DOUBLE(1.0711093225222612), - H5_DOUBLE(-9.8971679387636870e-1) + 2.1499497833454840e+56, + 6.6562295504670740e-3, + -1.5747263393432150, + 1.0711093225222612, + -9.8971679387636870e-1 }}; double new_data[2][5]; size_t precision, offset; @@ -4127,149 +4168,164 @@ test_nbit_int_size(hid_t file) hid_t dataspace, dataset, datatype, mem_datatype, dset_create_props; hsize_t dims[2], chunk_size[2]; hsize_t dset_size = 0; - int orig_data[DSET_DIM1][DSET_DIM2]; + int **orig = NULL; + int *orig_data = NULL; double power; int i, j; size_t precision, offset; TESTING(" nbit integer dataset size"); - /* Define dataset datatype (integer), and set precision, offset */ - if((datatype = H5Tcopy(H5T_NATIVE_INT)) < 0) { - H5_FAILED(); - HDprintf(" line %d: H5Tcopy failed\n",__LINE__); - goto error; - } /* end if */ + /* Set up data array */ + if(NULL == (orig_data = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (orig = (int **)HDcalloc(DSET_DIM1, sizeof(orig_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + orig[i] = orig_data + (i * DSET_DIM2); - precision = 16; /* precision includes sign bit */ - if(H5Tset_precision(datatype,precision)<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pset_precision failed\n",__LINE__); - goto error; - } /* end if */ + /* Define dataset datatype (integer), and set precision, offset */ + if((datatype = H5Tcopy(H5T_NATIVE_INT)) < 0) { + H5_FAILED(); + HDprintf(" line %d: H5Tcopy failed\n",__LINE__); + goto error; + } - offset = 8; - if(H5Tset_offset(datatype,offset)<0) { - H5_FAILED(); - HDprintf(" line %d: H5Tset_offset failed\n",__LINE__); - goto error; - } /* end if */ + precision = 16; /* precision includes sign bit */ + if(H5Tset_precision(datatype,precision)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pset_precision failed\n",__LINE__); + goto error; + } - /* Copy to memory datatype */ - if((mem_datatype = H5Tcopy(datatype)) < 0) { - H5_FAILED(); - HDprintf(" line %d: H5Tcopy failed\n",__LINE__); - goto error; - } /* end if */ + offset = 8; + if(H5Tset_offset(datatype,offset)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Tset_offset failed\n",__LINE__); + goto error; + } - /* Set order of dataset datatype */ - if(H5Tset_order(datatype, H5T_ORDER_BE)<0) { + /* Copy to memory datatype */ + if((mem_datatype = H5Tcopy(datatype)) < 0) { H5_FAILED(); - HDprintf(" line %d: H5Pset_order failed\n",__LINE__); - goto error; - } /* end if */ + HDprintf(" line %d: H5Tcopy failed\n",__LINE__); + goto error; + } - if(H5Tset_size(datatype, 4)<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pset_size failed\n",__LINE__); - goto error; - } /* end if */ + /* Set order of dataset datatype */ + if(H5Tset_order(datatype, H5T_ORDER_BE)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pset_order failed\n",__LINE__); + goto error; + } - /* Initiliaze data buffer with random data within correct range - * corresponding to the memory datatype's precision and offset. - */ - for (i=0; i < DSET_DIM1; i++) - for (j=0; j < DSET_DIM2; j++) { - power = HDpow(2.0F, (double)(precision-1)); - orig_data[i][j] = HDrandom() % (int)power << offset; - } /* end for */ + if(H5Tset_size(datatype, 4)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pset_size failed\n",__LINE__); + goto error; + } + /* Initiliaze data buffer with random data within correct range + * corresponding to the memory datatype's precision and offset. + */ + for (i=0; i < DSET_DIM1; i++) + for (j=0; j < DSET_DIM2; j++) { + power = HDpow(2.0F, (double)(precision-1)); + orig[i][j] = HDrandom() % (int)power << offset; + } - /* Describe the dataspace. */ - dims[0] = DSET_DIM1; - dims[1] = DSET_DIM2; - if((dataspace = H5Screate_simple (2, dims, NULL))<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pcreate failed\n",__LINE__); - goto error; - } /* end if */ - /* - * Set the dataset creation property list to specify the chunks - */ - chunk_size[0] = DSET_DIM1/10; - chunk_size[1] = DSET_DIM2/10; - if((dset_create_props = H5Pcreate (H5P_DATASET_CREATE))<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pcreate failed\n",__LINE__); - goto error; - } /* end if */ + /* Describe the dataspace. */ + dims[0] = DSET_DIM1; + dims[1] = DSET_DIM2; + if((dataspace = H5Screate_simple(2, dims, NULL))<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pcreate failed\n",__LINE__); + goto error; + } - if(H5Pset_chunk (dset_create_props, 2, chunk_size)<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pset_chunk failed\n",__LINE__); - goto error; - } /* end if */ + /* + * Set the dataset creation property list to specify the chunks + */ + chunk_size[0] = DSET_DIM1/10; + chunk_size[1] = DSET_DIM2/10; + if((dset_create_props = H5Pcreate(H5P_DATASET_CREATE))<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pcreate failed\n",__LINE__); + goto error; + } - /* - * Set for n-bit compression - */ - if(H5Pset_nbit (dset_create_props)<0) { - H5_FAILED(); - HDprintf(" line %d: H5Pset_nbit failed\n",__LINE__); - goto error; - } /* end if */ + if(H5Pset_chunk(dset_create_props, 2, chunk_size)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pset_chunk failed\n",__LINE__); + goto error; + } - /* - * Create a new dataset within the file. - */ - if((dataset = H5Dcreate2 (file, DSET_NBIT_INT_SIZE_NAME, datatype, + /* + * Set for n-bit compression + */ + if(H5Pset_nbit(dset_create_props)<0) { + H5_FAILED(); + HDprintf(" line %d: H5Pset_nbit failed\n",__LINE__); + goto error; + } + + /* + * Create a new dataset within the file. + */ + if((dataset = H5Dcreate2(file, DSET_NBIT_INT_SIZE_NAME, datatype, dataspace, H5P_DEFAULT, dset_create_props, H5P_DEFAULT))<0) { - H5_FAILED(); - HDprintf(" line %d: H5dwrite failed\n",__LINE__); - goto error; - } /* end if */ + H5_FAILED(); + HDprintf(" line %d: H5dwrite failed\n",__LINE__); + goto error; + } - /* - * Write the array to the file. - */ - if(H5Dwrite (dataset, mem_datatype, H5S_ALL, H5S_ALL, - H5P_DEFAULT, orig_data)<0) { - H5_FAILED(); - HDprintf(" Line %d: H5Dwrite failed\n",__LINE__); - goto error; - } /* end if */ + /* + * Write the array to the file. + */ + if(H5Dwrite(dataset, mem_datatype, H5S_ALL, H5S_ALL, H5P_DEFAULT, orig_data)<0) { + H5_FAILED(); + HDprintf(" Line %d: H5Dwrite failed\n",__LINE__); + goto error; + } - /* - * Get the precision of the data type - */ - if((precision = H5Tget_precision(datatype)) == 0) { - H5_FAILED(); - HDprintf(" Line %d: wrong precision size: %zu\n",__LINE__, precision); - goto error; - } /* end if */ + /* + * Get the precision of the data type + */ + if((precision = H5Tget_precision(datatype)) == 0) { + H5_FAILED(); + HDprintf(" Line %d: wrong precision size: %zu\n",__LINE__, precision); + goto error; + } - /* - * The size of the dataset after compression should around 2 * DSET_DIM1 * DSET_DIM2 - */ - if((dset_size = H5Dget_storage_size(dataset)) < DSET_DIM1*DSET_DIM2*(precision/8) || - dset_size > DSET_DIM1*DSET_DIM2*(precision/8) + 1*KB) { - H5_FAILED(); - HDfprintf(stdout, " Line %d: wrong dataset size: %Hu\n",__LINE__, dset_size); - goto error; - } /* end if */ + /* + * The size of the dataset after compression should around 2 * DSET_DIM1 * DSET_DIM2 + */ + if((dset_size = H5Dget_storage_size(dataset)) < DSET_DIM1*DSET_DIM2*(precision/8) || + dset_size > DSET_DIM1*DSET_DIM2*(precision/8) + 1*KB) { + H5_FAILED(); + HDfprintf(stdout, " Line %d: wrong dataset size: %Hu\n",__LINE__, dset_size); + goto error; + } - H5Tclose (datatype); - H5Tclose (mem_datatype); - H5Dclose (dataset); - H5Sclose (dataspace); - H5Pclose (dset_create_props); + H5Tclose(datatype); + H5Tclose(mem_datatype); + H5Dclose(dataset); + H5Sclose(dataspace); + H5Pclose(dset_create_props); + + HDfree(orig); + HDfree(orig_data); PASSED(); - return SUCCEED; + return SUCCEED; + error: + HDfree(orig); + HDfree(orig_data); + return FAIL; } /* end test_nbit_int_size() */ @@ -4295,13 +4351,22 @@ test_nbit_flt_size(hid_t file) hid_t dataspace, dataset, datatype, dset_create_props; hsize_t dims[2], chunk_size[2]; hsize_t dset_size = 0; - float orig_data[DSET_DIM1][DSET_DIM2]; + float **orig = NULL; + float *orig_data = NULL; int i, j; size_t precision, offset; size_t spos, epos, esize, mpos, msize; TESTING(" nbit floating-number dataset size"); + /* Set up data array */ + if(NULL == (orig_data = (float *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(float)))) + TEST_ERROR; + if(NULL == (orig = (float **)HDcalloc(DSET_DIM1, sizeof(orig_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + orig[i] = orig_data + (i * DSET_DIM2); + /* Define floating-point type for dataset *------------------------------------------------------------------- * size=4 byte, precision=16 bits, offset=8 bits, @@ -4380,7 +4445,7 @@ test_nbit_flt_size(hid_t file) */ for (i=0; i < DSET_DIM1; i++) for (j=0; j < DSET_DIM2; j++) - orig_data[i][j] = (float)(HDrandom() % 1234567) / 2; + orig[i][j] = (float)(HDrandom() % 1234567) / 2; /* Describe the dataspace. */ @@ -4465,8 +4530,14 @@ test_nbit_flt_size(hid_t file) PASSED(); + HDfree(orig); + HDfree(orig_data); + return SUCCEED; error: + HDfree(orig); + HDfree(orig_data); + return FAIL; } /* end test_nbit_flt_size() */ @@ -5460,7 +5531,7 @@ test_can_apply(hid_t file) } /* end if */ /* Write data */ - if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0) { + if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error writing dataset data\n",__LINE__); goto error; @@ -5488,7 +5559,7 @@ test_can_apply(hid_t file) } /* end if */ /* Read data */ - if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0) { + if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error reading dataset data\n",__LINE__); goto error; @@ -5619,7 +5690,7 @@ test_can_apply2(hid_t file) } /* end if */ /* Write data */ - if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0) { + if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error writing dataset data\n",__LINE__); goto error; @@ -5647,7 +5718,7 @@ test_can_apply2(hid_t file) } /* end if */ /* Read data */ - if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0) { + if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error reading dataset data\n",__LINE__); goto error; @@ -5988,7 +6059,7 @@ test_set_local(hid_t fapl) } /* end if */ /* Write data */ - if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0) { + if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error writing dataset data\n",__LINE__); goto error; @@ -6010,7 +6081,7 @@ test_set_local(hid_t fapl) } /* end if */ /* Write data */ - if(H5Dwrite(dsid, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_dbl) < 0) { + if(H5Dwrite(dsid, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, points_dbl_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error writing dataset data\n",__LINE__); goto error; @@ -6073,7 +6144,7 @@ test_set_local(hid_t fapl) } /* end if */ /* Read data */ - if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0) { + if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error reading dataset data\n", __LINE__); goto error; @@ -6123,7 +6194,7 @@ test_set_local(hid_t fapl) } /* end if */ /* Read data */ - if(H5Dread(dsid, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_dbl) < 0) { + if(H5Dread(dsid, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, check_dbl_data) < 0) { H5_FAILED(); HDprintf(" Line %d: Error reading dataset data\n", __LINE__); goto error; @@ -6856,10 +6927,12 @@ test_missing_chunk(hid_t file) hsize_t hs_start2[2], hs_stride2[2], hs_count2[2], hs_block2[2];/* Hyperslab setting */ /* Buffers for reading/writing dataset */ - int wdata[MISSING_CHUNK_DIM], - rdata[MISSING_CHUNK_DIM]; - int wdata2[MISSING_CHUNK_DIM][MISSING_CHUNK_DIM], - rdata2[MISSING_CHUNK_DIM][MISSING_CHUNK_DIM]; + int *wdata = NULL; + int *rdata = NULL; + int **wdata2 = NULL; + int **rdata2 = NULL; + int *wdata2_bytes = NULL; + int *rdata2_bytes = NULL; /* Setting for 1-D dataset */ hsize_t dsize=100, dmax=H5S_UNLIMITED; @@ -6876,6 +6949,26 @@ test_missing_chunk(hid_t file) TESTING("Read dataset with unwritten chunk & undefined fill value"); + /* Set up data arrays */ + if(NULL == (wdata = (int *)HDcalloc(MISSING_CHUNK_DIM, sizeof(int)))) + TEST_ERROR; + if(NULL == (rdata = (int *)HDcalloc(MISSING_CHUNK_DIM, sizeof(int)))) + TEST_ERROR; + + if(NULL == (wdata2_bytes = (int *)HDcalloc(MISSING_CHUNK_DIM * MISSING_CHUNK_DIM, sizeof(int)))) + TEST_ERROR; + if(NULL == (wdata2 = (int **)HDcalloc(MISSING_CHUNK_DIM, sizeof(wdata2_bytes)))) + TEST_ERROR; + for (i = 0; i < MISSING_CHUNK_DIM; i++) + wdata2[i] = wdata2_bytes + (i * MISSING_CHUNK_DIM); + + if(NULL == (rdata2_bytes = (int *)HDcalloc(MISSING_CHUNK_DIM * MISSING_CHUNK_DIM, sizeof(int)))) + TEST_ERROR; + if(NULL == (rdata2 = (int **)HDcalloc(MISSING_CHUNK_DIM, sizeof(rdata2_bytes)))) + TEST_ERROR; + for (i = 0; i < MISSING_CHUNK_DIM; i++) + rdata2[i] = rdata2_bytes + (i * MISSING_CHUNK_DIM); + /* Get the file's file access property list */ if((fapl = H5Fget_access_plist(file)) < 0) TEST_ERROR; @@ -6893,10 +6986,10 @@ test_missing_chunk(hid_t file) /* Initialize data for 2-D dataset */ for(i = 0; i < MISSING_CHUNK_DIM; i++) { - for(j = 0; j < MISSING_CHUNK_DIM; j++) { - wdata2[i][j] = (int)(j + (i * MISSING_CHUNK_DIM)); - rdata2[i][j] = 911; - } + for(j = 0; j < MISSING_CHUNK_DIM; j++) { + wdata2[i][j] = (int)(j + (i * MISSING_CHUNK_DIM)); + rdata2[i][j] = 911; + } } /* end for */ /* Create dataspace */ @@ -6954,11 +7047,11 @@ test_missing_chunk(hid_t file) /* Write selected data to the datasets */ if(H5Dwrite(d, H5T_NATIVE_INT, s, s, H5P_DEFAULT, wdata) < 0) TEST_ERROR; - if(H5Dwrite(did2, H5T_NATIVE_INT, sid2, sid2, H5P_DEFAULT, wdata2) < 0) TEST_ERROR; + if(H5Dwrite(did2, H5T_NATIVE_INT, sid2, sid2, H5P_DEFAULT, wdata2_bytes) < 0) TEST_ERROR; /* Read all data from the datasets */ if(H5Dread(d, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata) < 0) TEST_ERROR; - if(H5Dread(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata2) < 0) TEST_ERROR; + if(H5Dread(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata2_bytes) < 0) TEST_ERROR; /* Validata values read for the 1-D dataset */ for(u=0; u<MISSING_CHUNK_DIM; u++) { @@ -7005,6 +7098,13 @@ test_missing_chunk(hid_t file) if(H5Dclose(d) < 0) TEST_ERROR; if(H5Dclose(did2) < 0) TEST_ERROR; + HDfree(rdata); + HDfree(wdata); + HDfree(rdata2); + HDfree(wdata2); + HDfree(rdata2_bytes); + HDfree(wdata2_bytes); + PASSED(); return SUCCEED; @@ -7019,6 +7119,14 @@ error: H5Sclose(s); H5Sclose(sid2); } H5E_END_TRY; + + HDfree(rdata); + HDfree(wdata); + HDfree(rdata2); + HDfree(wdata2); + HDfree(rdata2_bytes); + HDfree(wdata2_bytes); + return FAIL; } /* end test_missing_chunk() */ @@ -7161,8 +7269,8 @@ test_random_chunks_real(const char *testname, hbool_t early_alloc, hid_t fapl) /* Generate random point coordinates. Only one point is selected per chunk */ for(i=0; i<NPOINTS; i++){ - chunk_row = ofs / cols; - chunk_col = ofs % cols; + H5_CHECKED_ASSIGN(chunk_row, int, ofs / cols, long); + H5_CHECKED_ASSIGN(chunk_col, int, ofs % cols, long); ofs = (ofs + inc) % (rows * cols); HDassert(!check2[chunk_row][chunk_col]); @@ -7282,14 +7390,14 @@ test_random_chunks_real(const char *testname, hbool_t early_alloc, hid_t fapl) for(j = 0; j < nsize[1] / csize[1]; j++) check2[i][j] = 0; - rows = nsize[0] / csize[0]; - cols = nsize[1] / csize[1]; + H5_CHECKED_ASSIGN(rows, int, nsize[0] / csize[0], long); + H5_CHECKED_ASSIGN(cols, int, nsize[1] / csize[1], long); make_random_offset_and_increment(rows * cols, &ofs, &inc); /* Generate random point coordinates. Only one point is selected per chunk */ for(i = 0; i < NPOINTS; i++){ - chunk_row = ofs / cols; - chunk_col = ofs % cols; + H5_CHECKED_ASSIGN(chunk_row, int, ofs / cols, long); + H5_CHECKED_ASSIGN(chunk_col, int, ofs % cols, long); ofs = (ofs + inc) % (rows * cols); HDassert(!check2[chunk_row][chunk_col]); @@ -7398,8 +7506,8 @@ test_random_chunks_real(const char *testname, hbool_t early_alloc, hid_t fapl) /* Generate random point coordinates. Only one point is selected per chunk */ for(i = 0; i < NPOINTS; i++){ - chunk_row = ofs / cols; - chunk_col = ofs % cols; + H5_CHECKED_ASSIGN(chunk_row, int, ofs / cols, long); + H5_CHECKED_ASSIGN(chunk_col, int, ofs % cols, long); ofs = (ofs + inc) % (rows * cols); HDassert(!check2[chunk_row][chunk_col]); @@ -7547,10 +7655,10 @@ static herr_t test_deprec(hid_t file) { hid_t dataset, space, small_space, create_parms, dcpl; - hsize_t dims[2], small_dims[2]; - hsize_t deprec_size; - herr_t status; - hsize_t csize[2]; + hsize_t dims[2], small_dims[2]; + hsize_t deprec_size; + herr_t H5_ATTR_NDEBUG_UNUSED status; + hsize_t csize[2]; TESTING("deprecated API routines"); @@ -8077,9 +8185,13 @@ test_big_chunks_bypass_cache(hid_t fapl) hsize_t t_count[2], t_stride[2], t_offset[2], t_block[2]; /* Setting for hyperslab (2-D) */ /* Buffers for reading and writing data (1-D) */ int *wdata = NULL, *rdata1 = NULL, *rdata2 = NULL; - /* Buffer for reading and writing data (2-D) */ - static int t_wdata[BYPASS_CHUNK_DIM/2][BYPASS_CHUNK_DIM/2], t_rdata1[BYPASS_DIM][BYPASS_DIM], - t_rdata2[BYPASS_CHUNK_DIM/2][BYPASS_CHUNK_DIM/2]; + /* Buffers for reading and writing data (2-D) */ + int **t_wdata = NULL; + int **t_rdata1 = NULL; + int **t_rdata2 = NULL; + int *t_wdata_bytes = NULL; + int *t_rdata1_bytes = NULL; + int *t_rdata2_bytes = NULL; int i, j; /* Local index variables */ H5F_libver_t low; /* File format low bound */ H5D_chunk_index_t idx_type, t_idx_type; /* Dataset chunk index types */ @@ -8089,6 +8201,29 @@ test_big_chunks_bypass_cache(hid_t fapl) h5_fixname(FILENAME[9], fapl, filename, sizeof filename); + /* Set up data arrays */ + if(NULL == (t_wdata_bytes = (int *)HDcalloc((BYPASS_CHUNK_DIM/2) * (BYPASS_CHUNK_DIM/2), sizeof(int)))) + TEST_ERROR; + if(NULL == (t_wdata = (int **)HDcalloc((BYPASS_CHUNK_DIM/2), sizeof(t_wdata_bytes)))) + TEST_ERROR; + for (i = 0; i < (BYPASS_CHUNK_DIM/2); i++) + t_wdata[i] = t_wdata_bytes + (i * (BYPASS_CHUNK_DIM/2)); + + if(NULL == (t_rdata1_bytes = (int *)HDcalloc(BYPASS_DIM * BYPASS_DIM, sizeof(int)))) + TEST_ERROR; + if(NULL == (t_rdata1 = (int **)HDcalloc(BYPASS_DIM, sizeof(t_rdata1_bytes)))) + TEST_ERROR; + for (i = 0; i < BYPASS_DIM; i++) + t_rdata1[i] = t_rdata1_bytes + (i * BYPASS_DIM); + + if(NULL == (t_rdata2_bytes = (int *)HDcalloc((BYPASS_CHUNK_DIM/2) * (BYPASS_CHUNK_DIM/2), sizeof(int)))) + TEST_ERROR; + if(NULL == (t_rdata2 = (int **)HDcalloc((BYPASS_CHUNK_DIM/2), sizeof(t_rdata2_bytes)))) + TEST_ERROR; + for (i = 0; i < (BYPASS_CHUNK_DIM/2); i++) + t_rdata2[i] = t_rdata2_bytes + (i * (BYPASS_CHUNK_DIM/2)); + + /* Check if we are using the latest version of the format */ if(H5Pget_libver_bounds(fapl, &low, NULL) < 0) FAIL_STACK_ERROR @@ -8177,8 +8312,8 @@ test_big_chunks_bypass_cache(hid_t fapl) /* Initialize data to write for 2-D dataset */ for(i = 0; i < BYPASS_CHUNK_DIM / 2; i++) - for(j = 0; j < BYPASS_CHUNK_DIM / 2; j++) - t_wdata[i][j] = j; + for(j = 0; j < BYPASS_CHUNK_DIM / 2; j++) + t_wdata[i][j] = j; /* Set up memory space for the 2-D dataset */ mid = H5Screate_simple(2, t_block, NULL); @@ -8187,7 +8322,7 @@ test_big_chunks_bypass_cache(hid_t fapl) /* This write should go through the cache because fill value is used. */ if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, sid, H5P_DEFAULT, wdata) < 0) FAIL_STACK_ERROR - if(H5Dwrite(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_wdata) < 0) + if(H5Dwrite(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_wdata_bytes) < 0) FAIL_STACK_ERROR /* Close the first 1-D & 2-D datasets */ @@ -8202,7 +8337,7 @@ test_big_chunks_bypass_cache(hid_t fapl) * chunk is bigger than the cache size and it isn't allocated on disk. */ if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata1) < 0) FAIL_STACK_ERROR - if(H5Dread(t_dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, t_rdata1) < 0) + if(H5Dread(t_dsid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, t_rdata1_bytes) < 0) FAIL_STACK_ERROR /* Verify data for the first 1-D dataset */ @@ -8233,8 +8368,8 @@ test_big_chunks_bypass_cache(hid_t fapl) for(i = BYPASS_CHUNK_DIM / 2; i < BYPASS_DIM; i++) for(j = BYPASS_CHUNK_DIM / 2; j < BYPASS_DIM; j++) if(t_rdata1[i][j] != fvalue) { - HDprintf(" Read different values than written in the 2nd chunk.\n"); - HDprintf(" At line %d and index (%d, %d), t_rdata1 = %d. It should be %d.\n", + HDprintf(" Read different values than written in the 2nd chunk.\n"); + HDprintf(" At line %d and index (%d, %d), t_rdata1 = %d. It should be %d.\n", __LINE__, i, j, t_rdata1[i][j], fvalue); TEST_ERROR } /* end if */ @@ -8258,7 +8393,7 @@ test_big_chunks_bypass_cache(hid_t fapl) /* Write to the second 1-D & 2-D dataset */ if(H5Dwrite(dsid, H5T_NATIVE_INT, H5S_ALL, sid, H5P_DEFAULT, wdata) < 0) FAIL_STACK_ERROR - if(H5Dwrite(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_wdata) < 0) + if(H5Dwrite(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_wdata_bytes) < 0) FAIL_STACK_ERROR /* Close the second 1-D & 2-D dataset */ @@ -8274,7 +8409,7 @@ test_big_chunks_bypass_cache(hid_t fapl) * the cache size. */ if(H5Dread(dsid, H5T_NATIVE_INT, H5S_ALL, sid, H5P_DEFAULT, rdata2) < 0) FAIL_STACK_ERROR - if(H5Dread(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_rdata2) < 0) + if(H5Dread(t_dsid, H5T_NATIVE_INT, mid, t_sid, H5P_DEFAULT, t_rdata2_bytes) < 0) FAIL_STACK_ERROR /* Verify data for the second 1-D dataset */ @@ -8309,6 +8444,12 @@ test_big_chunks_bypass_cache(hid_t fapl) HDfree(wdata); HDfree(rdata1); HDfree(rdata2); + HDfree(t_wdata); + HDfree(t_rdata1); + HDfree(t_rdata2); + HDfree(t_wdata_bytes); + HDfree(t_rdata1_bytes); + HDfree(t_rdata2_bytes); PASSED(); return SUCCEED; @@ -8324,12 +8465,17 @@ error: H5Sclose(t_sid); H5Fclose(fid); } H5E_END_TRY; - if(wdata) - HDfree(wdata); - if(rdata1) - HDfree(rdata1); - if(rdata2) - HDfree(rdata2); + + HDfree(wdata); + HDfree(rdata1); + HDfree(rdata2); + HDfree(t_wdata); + HDfree(t_rdata1); + HDfree(t_rdata2); + HDfree(t_wdata_bytes); + HDfree(t_rdata1_bytes); + HDfree(t_rdata2_bytes); + return FAIL; } /* end test_big_chunks_bypass_cache() */ @@ -8831,13 +8977,33 @@ test_chunk_fast_bug1(hid_t fapl) hid_t dsid = -1; /* Dataset ID */ hsize_t dim[2], max_dim[2], chunk_dim[2]; /* Dataset and chunk dimensions */ H5D_alloc_time_t alloc_time; /* Storage allocation time */ - static unsigned wbuf[40][20], rbuf[40][20]; /* Element written/read */ + + unsigned **wbuf = NULL; + unsigned **rbuf = NULL; + unsigned *wbuf_bytes = NULL; + unsigned *rbuf_bytes = NULL; + unsigned i, j; /* Local index variables */ TESTING("datasets w/extensible array chunk indexing bug"); h5_fixname(FILENAME[10], fapl, filename, sizeof filename); + /* Set up data array */ + if(NULL == (wbuf_bytes = (unsigned *)HDcalloc(40 * 20, sizeof(unsigned)))) + TEST_ERROR; + if(NULL == (wbuf = (unsigned **)HDcalloc(40, sizeof(wbuf_bytes)))) + TEST_ERROR; + for (i = 0; i < 40; i++) + wbuf[i] = wbuf_bytes + (i * 20); + + if(NULL == (rbuf_bytes = (unsigned *)HDcalloc(40 * 20, sizeof(unsigned)))) + TEST_ERROR; + if(NULL == (rbuf = (unsigned **)HDcalloc(40, sizeof(rbuf_bytes)))) + TEST_ERROR; + for (i = 0; i < 40; i++) + rbuf[i] = rbuf_bytes + (i * 20); + /* Initialize write buffer */ for(i=0; i<40; i++) for(j=0; j<20; j++) @@ -8871,7 +9037,7 @@ test_chunk_fast_bug1(hid_t fapl) FAIL_STACK_ERROR /* Write buffer to dataset */ - if(H5Dwrite(dsid, H5T_NATIVE_UINT, sid, sid, H5P_DEFAULT, &wbuf) < 0) + if(H5Dwrite(dsid, H5T_NATIVE_UINT, sid, sid, H5P_DEFAULT, wbuf_bytes) < 0) FAIL_STACK_ERROR /* Close everything */ @@ -8881,7 +9047,7 @@ test_chunk_fast_bug1(hid_t fapl) if((dsid = H5Dopen2(fid, "dset", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR /* Read from dataset */ - if(H5Dread(dsid, H5T_NATIVE_UINT, sid, sid, H5P_DEFAULT, &rbuf) < 0) + if(H5Dread(dsid, H5T_NATIVE_UINT, sid, sid, H5P_DEFAULT, rbuf_bytes) < 0) FAIL_STACK_ERROR /* Verify read data */ @@ -8898,6 +9064,11 @@ test_chunk_fast_bug1(hid_t fapl) if(H5Sclose(sid) < 0) FAIL_STACK_ERROR + HDfree(wbuf); + HDfree(rbuf); + HDfree(wbuf_bytes); + HDfree(rbuf_bytes); + PASSED(); return SUCCEED; @@ -8908,6 +9079,12 @@ error: H5Sclose(sid); H5Fclose(fid); } H5E_END_TRY; + + HDfree(wbuf); + HDfree(rbuf); + HDfree(wbuf_bytes); + HDfree(rbuf_bytes); + return FAIL; } /* end test_chunk_fast_bug1() */ @@ -9432,13 +9609,19 @@ test_fixed_array(hid_t fapl) int *rbuf_big = NULL; /* read buffer for big dataset */ const hsize_t chunk_dim2[2] = {4, 3}; /* Chunk dimensions */ - int chunks[12][6]; /* # of chunks for dataset dimensions */ - int chunks_big[125][20]; /* # of chunks for big dataset dimensions */ + + int **chunks = NULL; /* # of chunks for dataset dimensions */ + int **chunks_big = NULL; /* # of chunks for big dataset dimensions */ + int *chunks_bytes = NULL; + int *chunks_big_bytes = NULL; + int chunk_row; /* chunk row index */ int chunk_col; /* chunk column index */ - hsize_t coord[POINTS][2]; /* datdaset coordinates */ - hsize_t coord_big[POINTS_BIG][2]; /* big dataset coordinates */ + hsize_t **coord = NULL; /* datdaset coordinates */ + hsize_t **coord_big = NULL; /* big datdaset coordinates */ + hsize_t *coord_bytes = NULL; + hsize_t *coord_big_bytes = NULL; H5D_chunk_index_t idx_type; /* Dataset chunk index type */ H5F_libver_t low, high; /* File format bounds */ @@ -9461,6 +9644,35 @@ test_fixed_array(hid_t fapl) h5_fixname(FILENAME[12], fapl, filename, sizeof filename); + /* Set up 2D data arrays */ + if(NULL == (chunks_bytes = (int *)HDcalloc(12 * 6, sizeof(int)))) + TEST_ERROR; + if(NULL == (chunks = (int **)HDcalloc(12, sizeof(chunks_bytes)))) + TEST_ERROR; + for (i = 0; i < 12; i++) + chunks[i] = chunks_bytes + (i * 6); + + if(NULL == (chunks_big_bytes = (int *)HDcalloc(125 * 20, sizeof(int)))) + TEST_ERROR; + if(NULL == (chunks_big = (int **)HDcalloc(125, sizeof(chunks_big_bytes)))) + TEST_ERROR; + for (i = 0; i < 125; i++) + chunks_big[i] = chunks_big_bytes + (i * 20); + + if(NULL == (coord_bytes = (hsize_t *)HDcalloc(POINTS * 2, sizeof(hsize_t)))) + TEST_ERROR; + if(NULL == (coord = (hsize_t **)HDcalloc(POINTS, sizeof(coord_bytes)))) + TEST_ERROR; + for (i = 0; i < POINTS; i++) + coord[i] = coord_bytes + (i * 2); + + if(NULL == (coord_big_bytes = (hsize_t *)HDcalloc(POINTS_BIG * 2, sizeof(hsize_t)))) + TEST_ERROR; + if(NULL == (coord_big = (hsize_t **)HDcalloc(POINTS_BIG, sizeof(coord_big_bytes)))) + TEST_ERROR; + for (i = 0; i < POINTS_BIG; i++) + coord_big[i] = coord_big_bytes + (i * 2); + /* Check if we are using the latest version of the format */ if(H5Pget_libver_bounds(fapl, &low, &high) < 0) FAIL_STACK_ERROR @@ -9520,8 +9732,8 @@ test_fixed_array(hid_t fapl) /* Generate random point coordinates. Only one point is selected per chunk */ for(i = 0; i < POINTS; i++){ - chunk_row = ofs / cols; - chunk_col = ofs % cols; + H5_CHECKED_ASSIGN(chunk_row, int, ofs / cols, long); + H5_CHECKED_ASSIGN(chunk_col, int, ofs % cols, long); ofs = (ofs + inc) % (rows * cols); HDassert(!chunks[chunk_row][chunk_col]); @@ -9560,7 +9772,7 @@ test_fixed_array(hid_t fapl) if((mem_id = H5Screate_simple(1, msize, NULL)) < 0) TEST_ERROR; /* Select the random points for writing */ - if(H5Sselect_elements(sid_max, H5S_SELECT_SET, POINTS, (const hsize_t *)coord) < 0) + if(H5Sselect_elements(sid_max, H5S_SELECT_SET, POINTS, (const hsize_t *)coord_bytes) < 0) TEST_ERROR; /* Write into dataset */ @@ -9601,7 +9813,7 @@ test_fixed_array(hid_t fapl) if((mem_id = H5Screate_simple(1, msize, NULL)) < 0) TEST_ERROR; /* Select the random points for writing */ - if(H5Sselect_elements(sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord) < 0) + if(H5Sselect_elements(sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord_bytes) < 0) TEST_ERROR; /* Write into dataset */ @@ -9649,8 +9861,8 @@ test_fixed_array(hid_t fapl) /* Generate random point coordinates. Only one point is selected per chunk */ for(i = 0; i < POINTS_BIG; i++){ - chunk_row = ofs / cols; - chunk_col = ofs % cols; + H5_CHECKED_ASSIGN(chunk_row, int, ofs / cols, long); + H5_CHECKED_ASSIGN(chunk_col, int, ofs % cols, long); ofs = (ofs + inc) % (rows * cols); HDassert(!chunks_big[chunk_row][chunk_col]); @@ -9663,7 +9875,7 @@ test_fixed_array(hid_t fapl) if((big_mem_id = H5Screate_simple(1, msize_big, NULL)) < 0) TEST_ERROR; /* Select the random points for writing */ - if(H5Sselect_elements(sid_big, H5S_SELECT_SET, POINTS_BIG, (const hsize_t *)coord_big) < 0) + if(H5Sselect_elements(sid_big, H5S_SELECT_SET, POINTS_BIG, (const hsize_t *)coord_big_bytes) < 0) TEST_ERROR; /* Write into dataset */ @@ -9685,7 +9897,7 @@ test_fixed_array(hid_t fapl) if((mem_id = H5Screate_simple(1, msize, NULL)) < 0) TEST_ERROR; /* Select the random points for reading */ - if(H5Sselect_elements (sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord) < 0) TEST_ERROR; + if(H5Sselect_elements (sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord_bytes) < 0) TEST_ERROR; /* Read from dataset */ if(H5Dread(dsid, H5T_NATIVE_INT, mem_id, sid, H5P_DEFAULT, rbuf) < 0) TEST_ERROR; @@ -9713,7 +9925,7 @@ test_fixed_array(hid_t fapl) if((mem_id = H5Screate_simple(1, msize, NULL)) < 0) TEST_ERROR; /* Select the random points for reading */ - if(H5Sselect_elements (sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord) < 0) TEST_ERROR; + if(H5Sselect_elements (sid, H5S_SELECT_SET, POINTS, (const hsize_t *)coord_bytes) < 0) TEST_ERROR; /* Read from dataset */ if(H5Dread(dsid, H5T_NATIVE_INT, mem_id, sid, H5P_DEFAULT, rbuf) < 0) TEST_ERROR; @@ -9740,7 +9952,7 @@ test_fixed_array(hid_t fapl) if((big_mem_id = H5Screate_simple(1, msize_big, NULL)) < 0) TEST_ERROR; /* Select the random points for reading */ - if(H5Sselect_elements (sid_big, H5S_SELECT_SET, POINTS_BIG, (const hsize_t *)coord_big) < 0) TEST_ERROR; + if(H5Sselect_elements (sid_big, H5S_SELECT_SET, POINTS_BIG, (const hsize_t *)coord_big_bytes) < 0) TEST_ERROR; /* Read from dataset */ if(H5Dread(dsid_big, H5T_NATIVE_INT, big_mem_id, sid_big, H5P_DEFAULT, rbuf_big) < 0) TEST_ERROR; @@ -9782,6 +9994,15 @@ test_fixed_array(hid_t fapl) HDfree(wbuf_big); HDfree(rbuf_big); + HDfree(chunks); + HDfree(chunks_big); + HDfree(coord); + HDfree(coord_big); + HDfree(chunks_bytes); + HDfree(chunks_big_bytes); + HDfree(coord_bytes); + HDfree(coord_big_bytes); + PASSED(); return SUCCEED; @@ -9793,10 +10014,18 @@ error: H5Sclose(mem_id); H5Fclose(fid); } H5E_END_TRY; - if(wbuf_big) - HDfree(wbuf_big); - if(rbuf_big) - HDfree(rbuf_big); + + HDfree(wbuf_big); + HDfree(rbuf_big); + HDfree(chunks); + HDfree(chunks_big); + HDfree(coord); + HDfree(coord_big); + HDfree(chunks_bytes); + HDfree(chunks_big_bytes); + HDfree(coord_bytes); + HDfree(coord_big_bytes); + return FAIL; } /* end test_fixed_array() */ @@ -10763,7 +10992,7 @@ test_earray_hdr_fd(const char *env_h5_driver, hid_t fapl) const hsize_t maxshape[1] = { H5S_UNLIMITED }; const hsize_t chunk[1] = { 8 }; const int buffer[8] = {0, 1, 2, 3, 4, 5, 6, 7}; - H5O_info_t info; + H5O_info2_t info; TESTING("Extensible array chunk index header flush dependencies handled correctly"); @@ -10828,9 +11057,9 @@ test_earray_hdr_fd(const char *env_h5_driver, hid_t fapl) FAIL_STACK_ERROR; /* The second call triggered a bug in the library (JIRA issue: SWMR-95) */ - if(H5Oget_info_by_name2(fid, DSET_EARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(fid, DSET_EARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; - if(H5Oget_info_by_name2(fid, DSET_EARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(fid, DSET_EARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; if(H5Pclose(fapl) < 0) @@ -10883,7 +11112,7 @@ test_farray_hdr_fd(const char *env_h5_driver, hid_t fapl) const hsize_t maxshape[1] = { 64 }; const hsize_t chunk[1] = { 8 }; const int buffer[8] = {0, 1, 2, 3, 4, 5, 6, 7}; - H5O_info_t info; + H5O_info2_t info; TESTING("Fixed array chunk index header flush dependencies handled correctly"); @@ -10948,9 +11177,9 @@ test_farray_hdr_fd(const char *env_h5_driver, hid_t fapl) FAIL_STACK_ERROR; /* The second call triggered a bug in the library (JIRA issue: SWMR-95) */ - if(H5Oget_info_by_name2(fid, DSET_FARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(fid, DSET_FARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; - if(H5Oget_info_by_name2(fid, DSET_FARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(fid, DSET_FARRAY_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; if(H5Pclose(fapl) < 0) @@ -11003,7 +11232,7 @@ test_bt2_hdr_fd(const char *env_h5_driver, hid_t fapl) const hsize_t maxshape[2] = { H5S_UNLIMITED, H5S_UNLIMITED }; const hsize_t chunk[2] = { 8, 8 }; const int buffer[8] = {0, 1, 2, 3, 4, 5, 6, 7}; - H5O_info_t info; + H5O_info2_t info; TESTING("Version 2 B-tree chunk index header flush dependencies handled correctly"); @@ -11068,9 +11297,9 @@ test_bt2_hdr_fd(const char *env_h5_driver, hid_t fapl) FAIL_STACK_ERROR; /* The second call triggered a bug in the library (JIRA issue: SWMR-95) */ - if(H5Oget_info_by_name2(fid, DSET_BT2_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(fid, DSET_BT2_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; - if(H5Oget_info_by_name2(fid, DSET_BT2_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(fid, DSET_BT2_HDR_FD, &info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR; if(H5Pclose(fapl) < 0) @@ -12780,13 +13009,13 @@ dls_01_read_stuff(hid_t fid) { int status = 0; hid_t did = 0; - H5O_info_t info; + H5O_info2_t info; did = H5Dopen2(fid, DLS_01_DATASET, H5P_DEFAULT); if(did <= 0) TEST_ERROR - status = H5Oget_info2(did, &info, H5O_INFO_BASIC ); + status = H5Oget_info3(did, &info, H5O_INFO_BASIC); if(status != 0) TEST_ERROR @@ -13283,6 +13512,7 @@ main(void) int nerrors = 0; const char *envval; hbool_t contig_addr_vfd; /* Whether VFD used has a contigous address space */ + int i; /* Don't run this test using certain file drivers */ envval = HDgetenv("HDF5_DRIVER"); @@ -13295,6 +13525,39 @@ main(void) /* Set the random # seed */ HDsrandom((unsigned)HDtime(NULL)); + /* Initialize global arrays */ + /* points */ + if(NULL == (points_data = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (points = (int **)HDcalloc(DSET_DIM1, sizeof(points_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + points[i] = points_data + (i * DSET_DIM2); + + /* check */ + if(NULL == (check_data = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (check = (int **)HDcalloc(DSET_DIM1, sizeof(check_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + check[i] = check_data + (i * DSET_DIM2); + + /* points_dbl */ + if(NULL == (points_dbl_data = (double *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(double)))) + TEST_ERROR; + if(NULL == (points_dbl = (double **)HDcalloc(DSET_DIM1, sizeof(points_dbl_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + points_dbl[i] = points_dbl_data + (i * DSET_DIM2); + + /* check_dbl */ + if(NULL == (check_dbl_data = (double *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(double)))) + TEST_ERROR; + if(NULL == (check_dbl = (double **)HDcalloc(DSET_DIM1, sizeof(check_dbl_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + check_dbl[i] = check_dbl_data + (i * DSET_DIM2); + /* Testing setup */ h5_reset(); fapl = h5_fileaccess(); @@ -13480,9 +13743,29 @@ main(void) #endif /* H5_HAVE_FILTER_SZIP */ h5_cleanup(FILENAME, fapl); + HDfree(points); + HDfree(check); + HDfree(points_dbl); + HDfree(check_dbl); + + HDfree(points_data); + HDfree(check_data); + HDfree(points_dbl_data); + HDfree(check_dbl_data); + HDexit(EXIT_SUCCESS); error: + HDfree(points); + HDfree(check); + HDfree(points_dbl); + HDfree(check_dbl); + + HDfree(points_data); + HDfree(check_data); + HDfree(points_dbl_data); + HDfree(check_dbl_data); + nerrors = MAX(1, nerrors); HDprintf("***** %d DATASET TEST%s FAILED! *****\n", nerrors, 1 == nerrors ? "" : "S"); diff --git a/test/dtypes.c b/test/dtypes.c index c4c3946..0f95830 100644 --- a/test/dtypes.c +++ b/test/dtypes.c @@ -5884,7 +5884,7 @@ test_latest(void) hid_t file = (-1); /* File ID */ hid_t tid1 = (-1), tid2 = (-1); /* Datatype ID */ hid_t fapl = (-1); /* File access property list */ - H5O_info_t oi; /* Stat buffer for committed datatype */ + H5O_native_info_t oi; /* Stat buffer for committed datatype */ hsize_t old_dtype_oh_size; /* Size of object header with "old" format */ hsize_t new_dtype_oh_size; /* Size of object header with "new" format */ char filename[1024]; /* Buffer for filename */ @@ -5918,7 +5918,7 @@ test_latest(void) FAIL_STACK_ERROR /* Get information about datatype on disk */ - if(H5Oget_info_by_name2(file, compnd_type, &oi, H5O_INFO_HDR, H5P_DEFAULT) < 0) + if(H5Oget_native_info_by_name(file, compnd_type, &oi, H5O_NATIVE_INFO_HDR, H5P_DEFAULT) < 0) FAIL_STACK_ERROR old_dtype_oh_size = oi.hdr.space.total; @@ -5943,7 +5943,7 @@ test_latest(void) FAIL_STACK_ERROR /* Get information about datatype on disk */ - if(H5Oget_info_by_name2(file, compnd_type, &oi, H5O_INFO_HDR, H5P_DEFAULT) < 0) + if(H5Oget_native_info_by_name(file, compnd_type, &oi, H5O_NATIVE_INFO_HDR, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Check that the object header info is still the same */ @@ -5979,7 +5979,7 @@ test_latest(void) FAIL_STACK_ERROR /* Get information about datatype on disk */ - if(H5Oget_info_by_name2(file, compnd_type, &oi, H5O_INFO_HDR, H5P_DEFAULT) < 0) + if(H5Oget_native_info_by_name(file, compnd_type, &oi, H5O_NATIVE_INFO_HDR, H5P_DEFAULT) < 0) FAIL_STACK_ERROR new_dtype_oh_size = oi.hdr.space.total; @@ -6008,7 +6008,7 @@ test_latest(void) FAIL_STACK_ERROR /* Get information about datatype on disk */ - if(H5Oget_info_by_name2(file, compnd_type, &oi, H5O_INFO_HDR, H5P_DEFAULT) < 0) + if(H5Oget_native_info_by_name(file, compnd_type, &oi, H5O_NATIVE_INFO_HDR, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Check that the object header info is still the same */ @@ -6732,7 +6732,7 @@ static void create_del_obj_named_test_file(const char *filename, hid_t fapl, hid_t my_fapl; /* Copy of file access property list ID */ hid_t dcpl; /* Dataset creation property list ID */ unsigned use_at_least_v18;/* Whether to use old or new format */ - herr_t status; /* Generic return value */ + herr_t H5_ATTR_NDEBUG_UNUSED status; /* Generic return value */ /* Make copy of FAPL */ my_fapl = H5Pcopy(fapl); @@ -7292,7 +7292,7 @@ test_utf_ascii_conv(void) /* Test conversion in memory */ H5E_BEGIN_TRY { - status = H5Tconvert(utf8_vtid, ascii_vtid, 1, (void *)utf8_w, NULL, H5P_DEFAULT); + status = H5Tconvert(utf8_vtid, ascii_vtid, 1, &utf8_w, NULL, H5P_DEFAULT); } H5E_END_TRY if(status >= 0) FAIL_STACK_ERROR @@ -7325,7 +7325,7 @@ test_utf_ascii_conv(void) ************************************************/ /* Test conversion in memory */ H5E_BEGIN_TRY { - status = H5Tconvert(ascii_vtid, utf8_vtid, 1, (void *)ascii_w, NULL, H5P_DEFAULT); + status = H5Tconvert(ascii_vtid, utf8_vtid, 1, &ascii_w, NULL, H5P_DEFAULT); } H5E_END_TRY if(status >= 0) FAIL_STACK_ERROR @@ -32,8 +32,14 @@ const char *FILENAME[] = { NULL }; +/* Windows doesn't have PATH_MAX */ +#ifndef PATH_MAX +#define PATH_MAX 4096 +#endif /* !PATH_MAX */ + /* Global patched filename buffer */ -static char filename[6][1024]; +#define N_FILENAMES 6 +static char *filename[N_FILENAMES]; /* Global property lists - just copies of the defaults (necessary to use * internal functions */ @@ -2896,10 +2902,11 @@ error: int main(void) { - unsigned nerrors = 0; /* track errors */ - H5P_genplist_t *plist; /* Property list pointer for FAPL */ - H5VL_connector_prop_t connector_prop; /* Property for VOL connector ID & info */ - hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ + unsigned nerrors = 0; /* track errors */ + H5P_genplist_t *plist; /* Property list pointer for FAPL */ + H5VL_connector_prop_t connector_prop; /* Property for VOL connector ID & info */ + hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ + int i; /* iterator */ /* Test Setup */ HDputs("Testing the external file cache"); @@ -2908,13 +2915,18 @@ main(void) fcpl_id = H5Pcreate(H5P_FILE_CREATE); fapl_id = h5_fileaccess(); + /* Allocate memory for filenames */ + for(i = 0; i < N_FILENAMES; i++) { + filename[i] = (char *)HDcalloc(PATH_MAX, sizeof(char)); + } + /* Patch filenames */ - h5_fixname(FILENAME[0], fapl_id, filename[0], sizeof(filename[0])); - h5_fixname(FILENAME[1], fapl_id, filename[1], sizeof(filename[1])); - h5_fixname(FILENAME[2], fapl_id, filename[2], sizeof(filename[2])); - h5_fixname(FILENAME[3], fapl_id, filename[3], sizeof(filename[3])); - h5_fixname(FILENAME[4], fapl_id, filename[4], sizeof(filename[4])); - h5_fixname(FILENAME[5], fapl_id, filename[5], sizeof(filename[5])); + h5_fixname(FILENAME[0], fapl_id, filename[0], PATH_MAX); + h5_fixname(FILENAME[1], fapl_id, filename[1], PATH_MAX); + h5_fixname(FILENAME[2], fapl_id, filename[2], PATH_MAX); + h5_fixname(FILENAME[3], fapl_id, filename[3], PATH_MAX); + h5_fixname(FILENAME[4], fapl_id, filename[4], PATH_MAX); + h5_fixname(FILENAME[5], fapl_id, filename[5], PATH_MAX); /* Push API context */ if(H5CX_push() < 0) FAIL_STACK_ERROR @@ -2942,7 +2954,8 @@ main(void) nerrors += (h5_verify_cached_stabs(FILENAME, fapl_id) < 0 ? 1 : 0); /* Pop API context */ - if(api_ctx_pushed && H5CX_pop() < 0) FAIL_STACK_ERROR + if(api_ctx_pushed && H5CX_pop() < 0) + FAIL_STACK_ERROR api_ctx_pushed = FALSE; if(nerrors) @@ -2952,6 +2965,10 @@ main(void) h5_clean_files(FILENAME, fapl_id); + for(i = 0; i < N_FILENAMES; i++) { + HDfree(filename[i]); + } + return EXIT_SUCCESS; error: @@ -2961,7 +2978,12 @@ error: H5Pclose(fapl_id); } H5E_END_TRY - if(api_ctx_pushed) H5CX_pop(); + if(api_ctx_pushed) + H5CX_pop(); + + for(i = 0; i < N_FILENAMES; i++) { + HDfree(filename[i]); + } return EXIT_FAILURE; } /* end main() */ diff --git a/test/err_compat.c b/test/err_compat.c index d2d039a..eb86760 100644 --- a/test/err_compat.c +++ b/test/err_compat.c @@ -35,7 +35,10 @@ const char *FILENAME[] = { #define DIM0 100 #define DIM1 200 -int ipoints2[DIM0][DIM1], icheck2[DIM0][DIM1]; +int **ipoints2 = NULL; +int **icheck2 = NULL; +int *ipoints2_data = NULL; +int *icheck2_data = NULL; #define DSET_NAME "a_dataset" #define FAKE_ID (hid_t)-1 @@ -465,13 +468,29 @@ dump_error(void) int main(void) { - hid_t file, fapl; + hid_t file, fapl; char filename[1024]; - const char *FUNC_main="main"; + const char *FUNC_main="main"; + int i; HDfprintf(stderr, " This program tests the Error API compatible with HDF5 v1.6. There are supposed to be some error messages\n"); fapl = h5_fileaccess(); + /* Set up data arrays */ + if(NULL == (ipoints2_data = (int *)HDcalloc(DIM0 * DIM1, sizeof(int)))) + TEST_ERROR; + if(NULL == (ipoints2 = (int **)HDcalloc(DIM0, sizeof(ipoints2_data)))) + TEST_ERROR; + for (i = 0; i < DIM0; i++) + ipoints2[i] = ipoints2_data + (i * DIM1); + + if(NULL == (icheck2_data = (int *)HDcalloc(DIM0 * DIM1, sizeof(int)))) + TEST_ERROR; + if(NULL == (icheck2 = (int **)HDcalloc(DIM0, sizeof(icheck2_data)))) + TEST_ERROR; + for (i = 0; i < DIM0; i++) + icheck2[i] = icheck2_data + (i * DIM1); + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR ; @@ -500,10 +519,20 @@ main(void) if(H5Fclose(file) < 0) TEST_ERROR ; h5_clean_files(FILENAME, fapl); + HDfree(ipoints2); + HDfree(ipoints2_data); + HDfree(icheck2); + HDfree(icheck2_data); + HDprintf("All error API tests passed.\n"); return 0; error: + HDfree(ipoints2); + HDfree(ipoints2_data); + HDfree(icheck2); + HDfree(icheck2_data); + HDprintf("***** ERROR TEST FAILED! *****\n"); return 1; } diff --git a/test/error_test.c b/test/error_test.c index 1de9065..e99a82f 100644 --- a/test/error_test.c +++ b/test/error_test.c @@ -38,7 +38,10 @@ const char *FILENAME[] = { #define DIM0 100 #define DIM1 200 -int ipoints2[DIM0][DIM1], icheck2[DIM0][DIM1]; +int **ipoints2 = NULL; +int **icheck2 = NULL; +int *ipoints2_data = NULL; +int *icheck2_data = NULL; hid_t ERR_CLS; hid_t ERR_CLS2; @@ -679,6 +682,7 @@ main(void) hid_t estack_id = -1; char filename[1024]; const char *FUNC_main = "main"; + int i; HDfprintf(stderr, " This program tests the Error API. There're supposed to be some error messages\n"); @@ -689,6 +693,21 @@ main(void) if ((fapl = h5_fileaccess()) < 0) TEST_ERROR; + /* Set up data arrays */ + if(NULL == (ipoints2_data = (int *)HDcalloc(DIM0 * DIM1, sizeof(int)))) + TEST_ERROR; + if(NULL == (ipoints2 = (int **)HDcalloc(DIM0, sizeof(ipoints2_data)))) + TEST_ERROR; + for (i = 0; i < DIM0; i++) + ipoints2[i] = ipoints2_data + (i * DIM1); + + if(NULL == (icheck2_data = (int *)HDcalloc(DIM0 * DIM1, sizeof(int)))) + TEST_ERROR; + if(NULL == (icheck2 = (int **)HDcalloc(DIM0, sizeof(icheck2_data)))) + TEST_ERROR; + for (i = 0; i < DIM0; i++) + icheck2[i] = icheck2_data + (i * DIM1); + h5_fixname(FILENAME[0], fapl, filename, sizeof(filename)); if ((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR; @@ -755,10 +774,20 @@ main(void) h5_clean_files(FILENAME, fapl); + HDfree(ipoints2); + HDfree(ipoints2_data); + HDfree(icheck2); + HDfree(icheck2_data); + HDfprintf(stderr, "\nAll error API tests passed.\n"); return 0; error: + HDfree(ipoints2); + HDfree(ipoints2_data); + HDfree(icheck2); + HDfree(icheck2_data); + HDfprintf(stderr, "\n***** ERROR TEST FAILED (real problem)! *****\n"); return 1; } diff --git a/test/extend.c b/test/extend.c index a31ac0e..1e2b5b5 100644 --- a/test/extend.c +++ b/test/extend.c @@ -25,11 +25,16 @@ const char *FILENAME[] = { NULL }; -#define NX 100 /* USE AN EVEN NUMBER!*/ -#define NY 100 /* USE AN EVEN NUMBER!*/ +#define N1X 100 /* USE AN EVEN NUMBER! */ +#define N1Y 100 /* USE AN EVEN NUMBER! */ +#define N2X (N1X / 2) +#define N2Y (N1Y / 2) /* Data buffers */ -static int buf1[NY][NX], buf2[NX / 2][NY / 2]; +static int **buf1 = NULL; +static int *buf1_data = NULL; +static int **buf2 = NULL; +static int *buf2_data = NULL; /*------------------------------------------------------------------------- @@ -49,8 +54,8 @@ static int write_data(const char *msg, hid_t file, const char *name, hid_t cparms, hid_t mem_space) { hid_t dataset, file_space, half_space; - static const hsize_t dims[2] = {NX, NY}; - static const hsize_t half_dims[2] = {NX / 2, NY / 2}; + static const hsize_t dims[2] = {N1X, N1Y}; + static const hsize_t half_dims[2] = {N2X, N2Y}; hsize_t size[2]; hsize_t max_size[2] = {0, 0}; hsize_t offset[2]; @@ -63,13 +68,13 @@ write_data(const char *msg, hid_t file, const char *name, hid_t cparms, hid_t me /* Write the data */ for(i = 0; i < 5; i++) - for(j = 0; j < 5; j++) { + for(j = 0; j < 5; j++) { - /* Extend the dataset */ - offset[0] = (hsize_t)(i * NX); - offset[1] = (hsize_t)(j * NY); - size[0] = offset[0] + NX; - size[1] = offset[1] + NY; + /* Extend the dataset */ + offset[0] = (hsize_t)(i * N1X); + offset[1] = (hsize_t)(j * N1Y); + size[0] = offset[0] + N1X; + size[1] = offset[1] + N1Y; if(size[0] > max_size[0] || size[1] > max_size[1]) { if(size[0] > max_size[0]) max_size[0] = size[0]; @@ -78,42 +83,41 @@ write_data(const char *msg, hid_t file, const char *name, hid_t cparms, hid_t me if(H5Dset_extent(dataset, max_size) < 0) TEST_ERROR; } /* end if */ - /* Select a hyperslab */ + /* Select a hyperslab */ if((file_space = H5Dget_space(dataset)) < 0) TEST_ERROR; - if(H5Sselect_hyperslab(file_space, H5S_SELECT_SET, offset, NULL, dims, NULL) < 0) TEST_ERROR; + if(H5Sselect_hyperslab(file_space, H5S_SELECT_SET, offset, NULL, dims, NULL) < 0) TEST_ERROR; - /* Write to the hyperslab */ - if(H5Dwrite(dataset, H5T_NATIVE_INT, mem_space, file_space, H5P_DEFAULT, buf1) < 0) TEST_ERROR; + /* Write to the hyperslab */ + if(H5Dwrite(dataset, H5T_NATIVE_INT, mem_space, file_space, H5P_DEFAULT, buf1_data) < 0) TEST_ERROR; if(H5Sclose(file_space) < 0) TEST_ERROR; - } /* end for */ + } /* end for */ /* Read the data */ if((half_space = H5Screate_simple(2, half_dims, NULL)) < 0) TEST_ERROR; if((file_space = H5Dget_space(dataset)) < 0) TEST_ERROR; for(i = 0; i < 10; i++) { - for(j = 0; j < 10; j++) { - - /* Select a hyperslab */ - offset[0] = (hsize_t)(i * (NX / 2)); - offset[1] = (hsize_t)(j * (NY / 2)); - if(H5Sselect_hyperslab(file_space, H5S_SELECT_SET, offset, NULL, half_dims, NULL) < 0) TEST_ERROR; - - /* Read */ - if(H5Dread(dataset, H5T_NATIVE_INT, half_space, file_space, H5P_DEFAULT, buf2) < 0) TEST_ERROR; - - /* Compare */ - for(k = 0; k < (NX / 2); k++) - for(m = 0; m < (NY / 2); m++) - if(buf2[k][m] != buf1[(i % 2) * (NX / 2) + k][(j % 2) * (NY / 2) + m]) { - HDprintf(" i=%d, j=%d, k=%d, m=%d\n", i, j, k, m); - HDprintf(" buf2[%d][%d]=%d\n", k, m, buf2[k][m]); - HDprintf(" buf1[%d][%d]=%d\n", (i % 2) * (NX / 2) + k, (j % 2) * (NY / 2) + m, buf1[(i % 2) * (NX / 2) + k][(j % 2) * (NY / 2) + m]); - TEST_ERROR; - } /* end if */ - } /* end for */ + for(j = 0; j < 10; j++) { + + /* Select a hyperslab */ + offset[0] = (hsize_t)(i * N2X); + offset[1] = (hsize_t)(j * N2Y); + if(H5Sselect_hyperslab(file_space, H5S_SELECT_SET, offset, NULL, half_dims, NULL) < 0) TEST_ERROR; + + /* Read */ + if(H5Dread(dataset, H5T_NATIVE_INT, half_space, file_space, H5P_DEFAULT, buf2_data) < 0) TEST_ERROR; + + /* Compare */ + for(k = 0; k < N2X; k++) + for(m = 0; m < N2Y; m++) + if(buf2[k][m] != buf1[(i % 2) * N2X + k][(j % 2) * N2Y + m]) { + HDprintf(" i=%d, j=%d, k=%d, m=%d\n", i, j, k, m); + HDprintf(" buf2[%d][%d]=%d\n", k, m, buf2[k][m]); + HDprintf(" buf1[%d][%d]=%d\n", (i % 2) * N2X + k, (j % 2) * N2Y + m, buf1[(i % 2) * N2X + k][(j % 2) * N2Y + m]); + TEST_ERROR; + } /* end if */ + } /* end for */ } /* end for */ - /* Cleanup */ if(H5Dclose(dataset) < 0) TEST_ERROR; if(H5Sclose(file_space) < 0) TEST_ERROR; @@ -146,8 +150,8 @@ static int write_data_deprec(const char *msg, hid_t file, const char *name, hid_t cparms, hid_t mem_space) { hid_t dataset, file_space, half_space; - static const hsize_t dims[2] = {NX, NY}; - static const hsize_t half_dims[2] = {NX / 2, NY / 2}; + static const hsize_t dims[2] = {N1X, N1Y}; + static const hsize_t half_dims[2] = {N2X, N2Y}; static hsize_t size[2]; hsize_t offset[2]; int i, j, k, m; @@ -159,48 +163,48 @@ write_data_deprec(const char *msg, hid_t file, const char *name, hid_t cparms, h /* Write the data */ for(i = 0; i < 5; i++) - for(j = 0; j < 5; j++) { + for(j = 0; j < 5; j++) { - /* Extend the dataset */ - offset[0] = (hsize_t)(i * NX); - offset[1] = (hsize_t)(j * NY); - size[0] = offset[0] + NX; - size[1] = offset[1] + NY; - if(H5Dextend(dataset, size) < 0) TEST_ERROR; + /* Extend the dataset */ + offset[0] = (hsize_t)(i * N1X); + offset[1] = (hsize_t)(j * N1Y); + size[0] = offset[0] + N1X; + size[1] = offset[1] + N1Y; + if(H5Dextend(dataset, size) < 0) TEST_ERROR; - /* Select a hyperslab */ + /* Select a hyperslab */ if((file_space = H5Dget_space(dataset)) < 0) TEST_ERROR; - if(H5Sselect_hyperslab(file_space, H5S_SELECT_SET, offset, NULL, dims, NULL) < 0) TEST_ERROR; + if(H5Sselect_hyperslab(file_space, H5S_SELECT_SET, offset, NULL, dims, NULL) < 0) TEST_ERROR; - /* Write to the hyperslab */ - if(H5Dwrite(dataset, H5T_NATIVE_INT, mem_space, file_space, H5P_DEFAULT, buf1) < 0) TEST_ERROR; + /* Write to the hyperslab */ + if(H5Dwrite(dataset, H5T_NATIVE_INT, mem_space, file_space, H5P_DEFAULT, buf1_data) < 0) TEST_ERROR; if(H5Sclose(file_space) < 0) TEST_ERROR; - } /* end for */ + } /* end for */ /* Read the data */ if((half_space = H5Screate_simple(2, half_dims, NULL)) < 0) TEST_ERROR; if((file_space = H5Dget_space(dataset)) < 0) TEST_ERROR; for(i = 0; i < 10; i++) { - for(j = 0; j < 10; j++) { - - /* Select a hyperslab */ - offset[0] = (hsize_t)(i * (NX / 2)); - offset[1] = (hsize_t)(j * (NY / 2)); - if(H5Sselect_hyperslab(file_space, H5S_SELECT_SET, offset, NULL, half_dims, NULL) < 0) TEST_ERROR; - - /* Read */ - if(H5Dread(dataset, H5T_NATIVE_INT, half_space, file_space, H5P_DEFAULT, buf2) < 0) TEST_ERROR; - - /* Compare */ - for(k = 0; k < (NX / 2); k++) - for(m = 0; m < (NY / 2); m++) - if(buf2[k][m] != buf1[(i % 2) * (NX / 2) + k][(j % 2) * (NY / 2) + m]) { - HDprintf(" i=%d, j=%d, k=%d, m=%d\n", i, j, k, m); - HDprintf(" buf2[%d][%d]=%d\n", k, m, buf2[k][m]); - HDprintf(" buf1[%d][%d]=%d\n", (i % 2) * (NX / 2) + k, (j % 2) * (NY / 2) + m, buf1[(i % 2) * (NX / 2) + k][(j % 2) * (NY / 2) + m]); - TEST_ERROR; - } /* end if */ - } /* end for */ + for(j = 0; j < 10; j++) { + + /* Select a hyperslab */ + offset[0] = (hsize_t)(i * N2X); + offset[1] = (hsize_t)(j * N2Y); + if(H5Sselect_hyperslab(file_space, H5S_SELECT_SET, offset, NULL, half_dims, NULL) < 0) TEST_ERROR; + + /* Read */ + if(H5Dread(dataset, H5T_NATIVE_INT, half_space, file_space, H5P_DEFAULT, buf2_data) < 0) TEST_ERROR; + + /* Compare */ + for(k = 0; k < N2X; k++) + for(m = 0; m < N2Y; m++) + if(buf2[k][m] != buf1[(i % 2) * N2X + k][(j % 2) * N2Y + m]) { + HDprintf(" i=%d, j=%d, k=%d, m=%d\n", i, j, k, m); + HDprintf(" buf2[%d][%d]=%d\n", k, m, buf2[k][m]); + HDprintf(" buf1[%d][%d]=%d\n", (i % 2) * N2X + k, (j % 2) * N2Y + m, buf1[(i % 2) * N2X + k][(j % 2) * N2Y + m]); + TEST_ERROR; + } /* end if */ + } /* end for */ } /* end for */ @@ -236,8 +240,8 @@ main (void) hid_t file, mem_space, cparms; hid_t fapl; int nerrors = 0; - static const hsize_t dims[2] = {NX, NY}; - static const hsize_t chunk_dims[2] = {NX/2, NY/2}; + static const hsize_t dims[2] = {N1X, N1Y}; + static const hsize_t chunk_dims[2] = {N2X, N2Y}; static hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; char filename[1024]; int i, j; @@ -246,9 +250,23 @@ main (void) fapl = h5_fileaccess(); /* Initialize buffer and space */ - for(i = 0; i < NX; i++) - for(j = 0; j < NY; j++) - buf1[i][j] = i * NY + j; + if(NULL == (buf1_data = (int *)HDcalloc(N1X * N1Y, sizeof(int)))) + TEST_ERROR; + if(NULL == (buf1 = (int **)HDcalloc(N1X, sizeof(buf1_data)))) + TEST_ERROR; + for (i = 0; i < N1X; i++) + buf1[i] = buf1_data + (i * N1Y); + + if(NULL == (buf2_data = (int *)HDcalloc(N2X * N2Y, sizeof(int)))) + TEST_ERROR; + if(NULL == (buf2 = (int **)HDcalloc(N2X, sizeof(buf2_data)))) + TEST_ERROR; + for (i = 0; i < N2X; i++) + buf2[i] = buf2_data + (i * N2Y); + + for(i = 0; i < N1X; i++) + for(j = 0; j < N1Y; j++) + buf1[i][j] = i * N1Y + j; if((mem_space = H5Screate_simple(2, dims, maxdims)) < 0) TEST_ERROR; @@ -288,9 +306,20 @@ main (void) HDprintf("All extend tests passed.\n"); h5_cleanup(FILENAME, fapl); + HDfree(buf1); + HDfree(buf1_data); + HDfree(buf2); + HDfree(buf2_data); + HDexit(EXIT_SUCCESS); error: + + HDfree(buf1); + HDfree(buf1_data); + HDfree(buf2); + HDfree(buf2_data); + HDprintf("*** One or more extend tests failed ***\n"); HDexit(EXIT_FAILURE); } /* end main() */ diff --git a/test/external_env.c b/test/external_env.c index 01f2cba..e9c7635 100644 --- a/test/external_env.c +++ b/test/external_env.c @@ -15,7 +15,6 @@ * Purpose: Tests datasets stored in external raw files. */ #include "external_common.h" -#include "external_fname.h" static const char *EXT_ENV_FNAME[] = { "extern_env_dir/env_file_1", @@ -189,7 +188,7 @@ main(void) HDputs("All external storage tests passed."); /* Clean up files used by file set tests */ - if(h5_cleanup(EXT_FNAME, fapl_id_old)) { + if(h5_cleanup(EXT_ENV_FNAME, fapl_id_old)) { HDremove("extern_env_1r.raw"); HDremove("extern_env_2r.raw"); HDremove("extern_env_3r.raw"); diff --git a/test/fheap.c b/test/fheap.c index 2cd2be3..b8c54d6 100644 --- a/test/fheap.c +++ b/test/fheap.c @@ -7617,7 +7617,8 @@ test_man_incr_insert_remove(hid_t fapl, H5HF_create_t *cparam, fheap_test_param_ H5F_t *f = NULL; /* Internal file object pointer */ H5HF_t *fh = NULL; /* Fractal heap wrapper */ haddr_t fh_addr; /* Address of fractal heap */ - unsigned char heap_id[100][MAX_HEAP_ID_LEN]; /* Heap ID for object inserted */ + unsigned char **heap_id = NULL; + unsigned char *heap_id_data = NULL; struct a_type_t1 { char a[10]; char b[40]; @@ -7629,6 +7630,14 @@ test_man_incr_insert_remove(hid_t fapl, H5HF_create_t *cparam, fheap_test_param_ /* Set the filename to use for this test (dependent on fapl) */ h5_fixname(FILENAME[0], fapl, filename, sizeof(filename)); + /* Set up data array */ + if(NULL == (heap_id_data = (unsigned char *)HDcalloc(100 * MAX_HEAP_ID_LEN, sizeof(unsigned char)))) + TEST_ERROR; + if(NULL == (heap_id = (unsigned char **)HDcalloc(100, sizeof(heap_id_data)))) + TEST_ERROR; + for (i = 0; i < 100; i++) + heap_id[i] = heap_id_data + (i * MAX_HEAP_ID_LEN); + /* Create the file to work on */ if((file = H5Fcreate(filename, H5F_ACC_TRUNC, tparam->my_fcpl, fapl)) < 0) FAIL_STACK_ERROR @@ -7695,7 +7704,10 @@ test_man_incr_insert_remove(hid_t fapl, H5HF_create_t *cparam, fheap_test_param_ /* All tests passed */ PASSED() - return(0); + HDfree(heap_id); + HDfree(heap_id_data); + + return 0; error: H5E_BEGIN_TRY { @@ -7703,7 +7715,11 @@ error: H5HF_close(fh); H5Fclose(file); } H5E_END_TRY; - return(1); + + HDfree(heap_id); + HDfree(heap_id_data); + + return 1; } /* test_man_incr_insert_remove() */ #endif /* QAK */ diff --git a/test/fillval.c b/test/fillval.c index 47cd53a..b3e2e88 100644 --- a/test/fillval.c +++ b/test/fillval.c @@ -758,7 +758,7 @@ test_rdwr_cases(hid_t file, hid_t dcpl, const char *dname, void *_fillval, int fillval=(-1), val_rd, should_be; int i, j, *buf=NULL, odd; unsigned u; - comp_datatype rd_c, fill_c, should_be_c; + comp_datatype rd_c, fill_c, should_be_c; comp_datatype *buf_c=NULL; H5D_space_status_t allocation; @@ -822,7 +822,7 @@ test_rdwr_cases(hid_t file, hid_t dcpl, const char *dname, void *_fillval, hs_offset[0], hs_offset[1], hs_offset[2], hs_offset[3], hs_offset[4], (double)rd_c.a, rd_c.x, rd_c.y, rd_c.z, - (double)fill_c.a, fill_c.x, fill_c.y, fill_c.z); + (double)fill_c.a, fill_c.x, fill_c.y, fill_c.z); goto error; } } diff --git a/test/flushrefresh.c b/test/flushrefresh.c index 92c9f87..20a4ba4 100644 --- a/test/flushrefresh.c +++ b/test/flushrefresh.c @@ -843,13 +843,13 @@ herr_t flush_verification(const char * obj_pathname, const char * expected) /* Variables */ hid_t oid = -1, fid = -1; herr_t status = 0; - H5O_info_t oinfo; + H5O_info2_t oinfo; /* Try to open the testfile and then obj_pathname within the file */ H5E_BEGIN_TRY { fid = H5Fopen(FILENAME, H5F_ACC_SWMR_READ, H5P_DEFAULT); oid = H5Oopen(fid, obj_pathname, H5P_DEFAULT); - status = H5Oget_info2(oid, &oinfo, H5O_INFO_BASIC); + status = H5Oget_info3(oid, &oinfo, H5O_INFO_BASIC); } H5E_END_TRY; /* Compare to expected result */ @@ -978,9 +978,12 @@ herr_t refresh_verification(const char * obj_pathname) { /* Variables */ hid_t oid,fid,status = 0; - H5O_info_t flushed_oinfo; - H5O_info_t refreshed_oinfo; + H5O_info2_t flushed_oinfo; + H5O_info2_t refreshed_oinfo; + H5O_native_info_t flushed_ninfo; + H5O_native_info_t refreshed_ninfo; int tries = 800, sleep_tries = 400; + int token_cmp; hbool_t ok = FALSE; HDremove(SIGNAL_BETWEEN_PROCESSES_2); @@ -990,8 +993,9 @@ herr_t refresh_verification(const char * obj_pathname) if((oid = H5Oopen(fid, obj_pathname, H5P_DEFAULT)) < 0) PROCESS_ERROR; /* Get Object info */ - if((status = H5Oget_info2(oid, &flushed_oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS|H5O_INFO_HDR)) < 0) PROCESS_ERROR; - + if((status = H5Oget_info3(oid, &flushed_oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS)) < 0) PROCESS_ERROR; + if((status = H5Oget_native_info(oid, &flushed_ninfo, H5O_NATIVE_INFO_HDR)) < 0) PROCESS_ERROR; + /* Make sure there are no attributes on the object. This is just a sanity check to ensure we didn't erroneously flush the attribute before starting the verification. */ @@ -1009,18 +1013,20 @@ herr_t refresh_verification(const char * obj_pathname) /* Get object info again. This will NOT reflect what's on disk, only what's in the cache. Thus, all values will be unchanged from above, despite newer information being on disk. */ - if((status = H5Oget_info2(oid, &refreshed_oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS|H5O_INFO_HDR)) < 0) PROCESS_ERROR; + if((status = H5Oget_info3(oid, &refreshed_oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS)) < 0) PROCESS_ERROR; + if((status = H5Oget_native_info(oid, &refreshed_ninfo, H5O_NATIVE_INFO_HDR)) < 0) PROCESS_ERROR; /* Verify that before doing a refresh, getting the object info returns stale information. (i.e., unchanged from above, despite new info on disk). */ - if(flushed_oinfo.addr != refreshed_oinfo.addr) PROCESS_ERROR; - if(flushed_oinfo.type != refreshed_oinfo.type) PROCESS_ERROR; - if(flushed_oinfo.hdr.version != refreshed_oinfo.hdr.version) PROCESS_ERROR; - if(flushed_oinfo.hdr.flags != refreshed_oinfo.hdr.flags) PROCESS_ERROR; - if(flushed_oinfo.num_attrs != refreshed_oinfo.num_attrs) PROCESS_ERROR; - if(flushed_oinfo.hdr.nmesgs != refreshed_oinfo.hdr.nmesgs) PROCESS_ERROR; - if(flushed_oinfo.hdr.nchunks != refreshed_oinfo.hdr.nchunks) PROCESS_ERROR; - if(flushed_oinfo.hdr.space.total != refreshed_oinfo.hdr.space.total) PROCESS_ERROR; + if(H5Otoken_cmp(oid, &flushed_oinfo.token, &refreshed_oinfo.token, &token_cmp) < 0) PROCESS_ERROR; + if(token_cmp) PROCESS_ERROR; + if(flushed_oinfo.type != refreshed_oinfo.type) PROCESS_ERROR; + if(flushed_oinfo.num_attrs != refreshed_oinfo.num_attrs) PROCESS_ERROR; + if(flushed_ninfo.hdr.version != refreshed_ninfo.hdr.version) PROCESS_ERROR; + if(flushed_ninfo.hdr.flags != refreshed_ninfo.hdr.flags) PROCESS_ERROR; + if(flushed_ninfo.hdr.nmesgs != refreshed_ninfo.hdr.nmesgs) PROCESS_ERROR; + if(flushed_ninfo.hdr.nchunks != refreshed_ninfo.hdr.nchunks) PROCESS_ERROR; + if(flushed_ninfo.hdr.space.total != refreshed_ninfo.hdr.space.total) PROCESS_ERROR; /* Refresh object */ /* The H5*refresh function called depends on which object we are trying @@ -1047,19 +1053,20 @@ herr_t refresh_verification(const char * obj_pathname) } /* end else */ /* Get object info. This should now accurately reflect the refreshed object on disk. */ - if((status = H5Oget_info2(oid, &refreshed_oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS|H5O_INFO_HDR)) < 0) - PROCESS_ERROR; + if((status = H5Oget_info3(oid, &refreshed_oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS)) < 0) PROCESS_ERROR; + if((status = H5Oget_native_info(oid, &refreshed_ninfo, H5O_NATIVE_INFO_HDR)) < 0) PROCESS_ERROR; + if(H5Otoken_cmp(oid, &flushed_oinfo.token, &refreshed_oinfo.token, &token_cmp) < 0) PROCESS_ERROR; /* Confirm following (first 4) attributes are the same: */ /* Confirm following (last 4) attributes are different */ - if( (flushed_oinfo.addr == refreshed_oinfo.addr) && - (flushed_oinfo.type == refreshed_oinfo.type) && - (flushed_oinfo.hdr.version == refreshed_oinfo.hdr.version) && - (flushed_oinfo.hdr.flags == refreshed_oinfo.hdr.flags) && - (flushed_oinfo.num_attrs != refreshed_oinfo.num_attrs) && - (flushed_oinfo.hdr.nmesgs != refreshed_oinfo.hdr.nmesgs) && - (flushed_oinfo.hdr.nchunks != refreshed_oinfo.hdr.nchunks) && - (flushed_oinfo.hdr.space.total != refreshed_oinfo.hdr.space.total) ) { + if( (!token_cmp) && + (flushed_oinfo.type == refreshed_oinfo.type) && + (flushed_oinfo.num_attrs != refreshed_oinfo.num_attrs) && + (flushed_ninfo.hdr.version == refreshed_ninfo.hdr.version) && + (flushed_ninfo.hdr.flags == refreshed_ninfo.hdr.flags) && + (flushed_ninfo.hdr.nmesgs != refreshed_ninfo.hdr.nmesgs) && + (flushed_ninfo.hdr.nchunks != refreshed_ninfo.hdr.nchunks) && + (flushed_ninfo.hdr.space.total != refreshed_ninfo.hdr.space.total) ) { ok = TRUE; break; } @@ -1071,11 +1078,11 @@ herr_t refresh_verification(const char * obj_pathname) if(!ok) { HDprintf("FLUSHED: num_attrs=%d, nmesgs=%d, nchunks=%d, total=%d\n", - (int)flushed_oinfo.num_attrs, (int)flushed_oinfo.hdr.nmesgs, - (int)flushed_oinfo.hdr.nchunks, (int)flushed_oinfo.hdr.space.total); + (int)flushed_oinfo.num_attrs, (int)flushed_ninfo.hdr.nmesgs, + (int)flushed_ninfo.hdr.nchunks, (int)flushed_ninfo.hdr.space.total); HDprintf("REFRESHED: num_attrs=%d, nmesgs=%d, nchunks=%d, total=%d\n", - (int)refreshed_oinfo.num_attrs, (int)refreshed_oinfo.hdr.nmesgs, - (int)refreshed_oinfo.hdr.nchunks, (int)refreshed_oinfo.hdr.space.total); + (int)refreshed_oinfo.num_attrs, (int)refreshed_ninfo.hdr.nmesgs, + (int)refreshed_ninfo.hdr.nchunks, (int)refreshed_ninfo.hdr.space.total); PROCESS_ERROR; } diff --git a/test/genall5.c b/test/genall5.c index 849d97c..3f55930 100644 --- a/test/genall5.c +++ b/test/genall5.c @@ -479,7 +479,7 @@ vrfy_ns_grp_c(hid_t fid, const char *group_name, unsigned nlinks) { u = 0; while ((pass) && (u < nlinks)) { - H5L_info_t lnk_info; + H5L_info2_t lnk_info; char linkname[16]; htri_t link_exists; @@ -493,7 +493,7 @@ vrfy_ns_grp_c(hid_t fid, const char *group_name, unsigned nlinks) { HDassert(link_exists >= 0); HDmemset(&lnk_info, 0, sizeof(grp_info)); - ret = H5Lget_info(gid, linkname, &lnk_info, H5P_DEFAULT); + ret = H5Lget_info2(gid, linkname, &lnk_info, H5P_DEFAULT); if (ret < 0) { pass = FALSE; @@ -554,7 +554,8 @@ vrfy_ns_grp_c(hid_t fid, const char *group_name, unsigned nlinks) { HDfree(slinkval); } /* end if */ else if (1 == (u % 3)) { - H5O_info_t root_oinfo; + H5O_info2_t root_oinfo; + int token_cmp = 0; if (H5L_TYPE_HARD != lnk_info.type) { pass = FALSE; @@ -563,18 +564,25 @@ vrfy_ns_grp_c(hid_t fid, const char *group_name, unsigned nlinks) { HDassert(H5L_TYPE_HARD == lnk_info.type); HDmemset(&root_oinfo, 0, sizeof(root_oinfo)); - ret = H5Oget_info2(fid, &root_oinfo, H5O_INFO_BASIC); + ret = H5Oget_info3(fid, &root_oinfo, H5O_INFO_BASIC); if (ret < 0) { pass = FALSE; failure_mssg = "vrfy_ns_grp_c: H5Oget_info() failed."; } - else if (root_oinfo.addr != lnk_info.u.address) { - pass = FALSE; - failure_mssg = "vrfy_ns_grp_c: root_oinfo.addr != lnk_info.u.address"; + else { + if(H5Otoken_cmp(fid, &root_oinfo.token, &lnk_info.u.token, &token_cmp) < 0) { + pass = FALSE; + failure_mssg = "vrfy_ns_grp_c: H5Otoken_cmp() failed."; + } + + if (token_cmp) { + pass = FALSE; + failure_mssg = "vrfy_ns_grp_c: root_oinfo.token != lnk_info.u.token"; + } } HDassert(ret >= 0); - HDassert(root_oinfo.addr == lnk_info.u.address); + HDassert(!token_cmp); } /* end else-if */ else { void *elinkval; @@ -888,7 +896,7 @@ vrfy_ns_grp_d(hid_t fid, const char *group_name, unsigned nlinks) { u = 0; while ((pass) && (u < nlinks)) { - H5L_info_t lnk_info; + H5L_info2_t lnk_info; char linkname[16]; htri_t link_exists; @@ -902,7 +910,7 @@ vrfy_ns_grp_d(hid_t fid, const char *group_name, unsigned nlinks) { HDassert(link_exists >= 0); HDmemset(&lnk_info, 0, sizeof(grp_info)); - ret = H5Lget_info(gid, linkname, &lnk_info, H5P_DEFAULT); + ret = H5Lget_info2(gid, linkname, &lnk_info, H5P_DEFAULT); if (ret < 0) { pass = FALSE; @@ -963,7 +971,8 @@ vrfy_ns_grp_d(hid_t fid, const char *group_name, unsigned nlinks) { HDfree(slinkval); } /* end if */ else if (1 == (u % 3)) { - H5O_info_t root_oinfo; + H5O_info2_t root_oinfo; + int token_cmp = 0; if (H5L_TYPE_HARD != lnk_info.type) { pass = FALSE; @@ -972,17 +981,24 @@ vrfy_ns_grp_d(hid_t fid, const char *group_name, unsigned nlinks) { HDassert(H5L_TYPE_HARD == lnk_info.type); HDmemset(&root_oinfo, 0, sizeof(root_oinfo)); - ret = H5Oget_info2(fid, &root_oinfo, H5O_INFO_BASIC); + ret = H5Oget_info3(fid, &root_oinfo, H5O_INFO_BASIC); if (ret < 0) { pass = FALSE; failure_mssg = "vrfy_ns_grp_d: H5Oget_info() failed."; } - else if (root_oinfo.addr != lnk_info.u.address) { - pass = FALSE; - failure_mssg = "vrfy_ns_grp_d: root_oinfo.addr != lnk_info.u.address"; + else { + if(H5Otoken_cmp(fid, &root_oinfo.token, &lnk_info.u.token, &token_cmp) < 0) { + pass = FALSE; + failure_mssg = "vrfy_ns_grp_d: H5Otoken_cmp() failed."; + } + + if (token_cmp) { + pass = FALSE; + failure_mssg = "vrfy_ns_grp_d: root_oinfo.token != lnk_info.u.token"; + } } HDassert(ret >= 0); - HDassert(root_oinfo.addr == lnk_info.u.address); + HDassert(!token_cmp); } /* end else-if */ else { void *elinkval; @@ -1486,7 +1502,7 @@ vrfy_os_grp_n(hid_t fid, const char *group_name, int proc_num, u = 0; while ((pass) && (u < nlinks)) { - H5L_info_t lnk_info; + H5L_info2_t lnk_info; char linkname[32]; htri_t link_exists; @@ -1500,7 +1516,7 @@ vrfy_os_grp_n(hid_t fid, const char *group_name, int proc_num, HDassert(link_exists >= 0); HDmemset(&lnk_info, 0, sizeof(grp_info)); - ret = H5Lget_info(gid, linkname, &lnk_info, H5P_DEFAULT); + ret = H5Lget_info2(gid, linkname, &lnk_info, H5P_DEFAULT); if (ret < 0) { pass = FALSE; @@ -1557,7 +1573,8 @@ vrfy_os_grp_n(hid_t fid, const char *group_name, int proc_num, HDfree(slinkval); } /* end if */ else { - H5O_info_t root_oinfo; + H5O_info2_t root_oinfo; + int token_cmp = 0; HDassert(1 == (u % 2)); @@ -1568,18 +1585,25 @@ vrfy_os_grp_n(hid_t fid, const char *group_name, int proc_num, HDassert(H5L_TYPE_HARD == lnk_info.type); HDmemset(&root_oinfo, 0, sizeof(root_oinfo)); - ret = H5Oget_info2(fid, &root_oinfo, H5O_INFO_BASIC); + ret = H5Oget_info3(fid, &root_oinfo, H5O_INFO_BASIC); if (ret < 0) { pass = FALSE; failure_mssg = "vrfy_os_grp_n: H5Oget_info() failed."; } - else if (root_oinfo.addr != lnk_info.u.address) { - pass = FALSE; - failure_mssg = "vrfy_os_grp_n: root_oinfo.addr != lnk_info.u.address"; + else { + if(H5Otoken_cmp(fid, &root_oinfo.token, &lnk_info.u.token, &token_cmp) < 0) { + pass = FALSE; + failure_mssg = "vrfy_os_grp_n: H5Otoken_cmp() failed."; + } + + if (token_cmp) { + pass = FALSE; + failure_mssg = "vrfy_os_grp_n: root_oinfo.token != lnk_info.u.token"; + } } HDassert(ret >= 0); - HDassert(root_oinfo.addr == lnk_info.u.address); + HDassert(!token_cmp); } /* end else */ u++; diff --git a/test/getname.c b/test/getname.c index 399f364..f677d78 100644 --- a/test/getname.c +++ b/test/getname.c @@ -101,8 +101,8 @@ test_main(hid_t file_id, hid_t fapl) hid_t space_id; hid_t type_id, type2_id; hsize_t dims[1] = { 5 }; - size_t name_len; /* Name length */ - H5O_info_t oinfo; /* Object info structs */ + size_t name_len; /* Name length */ + H5O_info2_t oinfo; /* Object info structs */ hid_t dtype; /* Object identifier for testing */ hid_t dtype_anon; /* Object identifier for testing anonymous */ ssize_t size; /* Size returned by H5Iget_name */ @@ -2390,7 +2390,7 @@ test_main(hid_t file_id, hid_t fapl) if((size = H5Iget_name(dtype_anon, NULL,0)) != 0) TEST_ERROR /* Store the address of the datatype for later use */ - if(H5Oget_info2(dtype_anon, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Oget_info3(dtype_anon, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR /* Update the reference count to dtype_anon to preserve the datatype */ if(H5Oincr_refcount(dtype_anon) < 0) TEST_ERROR @@ -2400,10 +2400,10 @@ test_main(hid_t file_id, hid_t fapl) if(H5Fclose(file2_id) < 0) TEST_ERROR /* Re-open the file and check that the anonymous datatypes persist */ - if( (file2_id = H5Fopen(filename2, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR + if((file2_id = H5Fopen(filename2, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR /* Check the H5Iget_name does not return an error for anon committed datatypes */ - if((dtype_anon = H5Oopen_by_addr(file2_id, oinfo.addr)) < 0) TEST_ERROR + if((dtype_anon = H5Oopen_by_token(file2_id, oinfo.token)) < 0) TEST_ERROR if((size = H5Iget_name(dtype_anon, NULL, 0)) != 0) TEST_ERROR diff --git a/test/h5test.c b/test/h5test.c index 6a3a5cb..ab859a5 100644 --- a/test/h5test.c +++ b/test/h5test.c @@ -1697,7 +1697,7 @@ error: */ static herr_t h5_verify_cached_stabs_cb(hid_t oid, const char H5_ATTR_UNUSED *name, - const H5O_info_t *oinfo, void H5_ATTR_UNUSED *udata) + const H5O_info2_t *oinfo, void H5_ATTR_UNUSED *udata) { if(oinfo->type == H5O_TYPE_GROUP) return H5G__verify_cached_stabs_test(oid); @@ -1745,7 +1745,7 @@ h5_verify_cached_stabs(const char *base_name[], hid_t fapl) continue; } /* end if */ - if(H5Ovisit2(file, H5_INDEX_NAME, H5_ITER_NATIVE, + if(H5Ovisit3(file, H5_INDEX_NAME, H5_ITER_NATIVE, h5_verify_cached_stabs_cb, NULL, H5O_INFO_BASIC) < 0) goto error; diff --git a/test/links.c b/test/links.c index 4dff1cf..60d3152 100644 --- a/test/links.c +++ b/test/links.c @@ -35,6 +35,7 @@ #include "H5Gpkg.h" /* Groups */ #include "H5Iprivate.h" /* IDs */ #include "H5Lprivate.h" /* Links */ +#include "H5VLnative_private.h" /* Native VOL connector */ /* File for external link test. Created with gen_udlinks.c */ #define LINKED_FILE "be_extlink2.h5" @@ -314,7 +315,119 @@ typedef struct { static hid_t dcpl_g; /* for [un]minimized dataset object headers */ +static herr_t +UD_hard_create(const char *link_name, hid_t loc_group, const void *udata, + size_t udata_size, hid_t lcpl_id); +static hid_t +UD_hard_traverse(const char *link_name, hid_t cur_group, + const void *udata, size_t udata_size, hid_t lapl_id, + hid_t dxpl_id); +static herr_t +UD_hard_delete(const char *link_name, hid_t file, const void *udata, + size_t udata_size); + +/* User-defined link class */ +const H5L_class_t UD_hard_class[1] = {{ + H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ + (H5L_type_t)UD_HARD_TYPE, /* Link type id number */ + "UD_hard_link", /* Link class name for debugging */ + UD_hard_create, /* Creation callback */ + NULL, /* Move/rename callback */ + NULL, /* Copy callback */ + UD_hard_traverse, /* The actual traversal function */ + UD_hard_delete, /* Deletion callback */ + NULL /* Query callback */ +}}; + +#ifndef H5_NO_DEPRECATED_SYMBOLS +static herr_t +UD_hard_create_deprec(const char *link_name, hid_t loc_group, const void *udata, + size_t udata_size, hid_t lcpl_id); +static hid_t +UD_hard_traverse_deprec(const char *link_name, hid_t cur_group, + const void *udata, size_t udata_size, hid_t lapl_id, + hid_t dxpl_id); +static herr_t +UD_hard_delete_deprec(const char *link_name, hid_t file, const void *udata, + size_t udata_size); + +/* User-defined link class */ +const H5L_class_t UD_hard_class_deprec[1] = {{ + H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ + (H5L_type_t)UD_HARD_TYPE, /* Link type id number */ + "UD_hard_link_deprec", /* Link class name for debugging */ + UD_hard_create_deprec, /* Creation callback */ + NULL, /* Move/rename callback */ + NULL, /* Copy callback */ + UD_hard_traverse_deprec, /* The actual traversal function */ + UD_hard_delete_deprec, /* Deletion callback */ + NULL /* Query callback */ +}}; +#endif + +static hid_t +UD_rereg_traverse(const char *link_name, hid_t cur_group, + const void *udata, size_t udata_size, hid_t lapl_id, + hid_t dxpl_id); + +/* This link class has the same ID number as the UD hard links but + * has a very different traversal function */ +const H5L_class_t UD_rereg_class[1] = {{ + H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ + (H5L_type_t)UD_HARD_TYPE, /* Link type id number */ + "UD_reregistered_type", /* Link class name for debugging */ + NULL, /* Creation callback */ + NULL, /* Move/rename callback */ + NULL, /* Copy callback */ + UD_rereg_traverse, /* The actual traversal function */ + NULL, /* Deletion callback */ + NULL /* Query callback */ +}}; + +static herr_t +UD_cb_create(const char * link_name, hid_t loc_group, const void *udata, + size_t udata_size, hid_t lcpl_id); +static herr_t +UD_cb_move(const char *new_name, hid_t new_loc, const void *udata, + size_t udata_size); +static hid_t +UD_cb_traverse(const char * link_name, hid_t cur_group, const void *udata, + size_t udata_size, hid_t lapl_id, hid_t dxpl_id); +static herr_t +UD_cb_delete(const char *link_name, hid_t file, const void *udata, + size_t udata_size); +static ssize_t +UD_cb_query(const char * link_name, const void *udata, size_t udata_size, + void *buf, size_t buf_size); + +const H5L_class_t UD_cb_class[1] = {{ + H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ + (H5L_type_t)UD_CB_TYPE, /* Link type id number */ + NULL, /* NULL name (to make sure this doesn't break anything */ + UD_cb_create, /* Creation callback */ + UD_cb_move, /* Move/rename callback */ + UD_cb_move, /* Copy callback */ + UD_cb_traverse, /* The actual traversal function */ + UD_cb_delete, /* Deletion callback */ + UD_cb_query /* Query callback */ +}}; +static hid_t +UD_plist_traverse(const char *link_name, hid_t cur_group, + const void *udata, size_t udata_size, hid_t lapl_id, + hid_t dxpl_id); + +const H5L_class_t UD_plist_class[1] = {{ + H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ + (H5L_type_t)UD_PLIST_TYPE, /* Link type id number */ + "UD_plist_link", /* Link class name for debugging */ + NULL, /* Creation callback */ + NULL, /* Move/rename callback */ + NULL, /* Copy callback */ + UD_plist_traverse, /* The actual traversal function */ + NULL, /* Deletion callback */ + NULL /* Query callback */ +}}; /*------------------------------------------------------------------------- * Function: fix_ext_filename @@ -499,10 +612,11 @@ static int cklinks(hid_t fapl, hbool_t new_format) { hid_t file; - H5O_info_t oinfo1, oinfo2; - H5L_info_t linfo2; + H5O_info2_t oinfo1, oinfo2; + H5L_info2_t linfo; char linkval[LINK_BUF_SIZE]; char filename[NAME_BUF_SIZE]; + int token_cmp; herr_t status; if(new_format) @@ -515,14 +629,15 @@ cklinks(hid_t fapl, hbool_t new_format) if((file = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) FAIL_STACK_ERROR /* Hard link */ - if(H5Oget_info_by_name2(file, "d1", &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file, "grp1/hard", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file, "d1", &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file, "grp1/hard", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5O_TYPE_DATASET != oinfo2.type) { H5_FAILED(); HDprintf(" %d: Unexpected object type should have been a dataset\n", __LINE__); TEST_ERROR } /* end if */ - if(H5F_addr_ne(oinfo1.addr, oinfo2.addr)) { + if(H5Otoken_cmp(file, &oinfo1.token, &oinfo2.token, &token_cmp) < 0) FAIL_STACK_ERROR + if(token_cmp) { H5_FAILED(); HDputs(" Hard link test failed. Link seems not to point to the "); HDputs(" expected file location."); @@ -551,13 +666,14 @@ cklinks(hid_t fapl, hbool_t new_format) } /* end if */ /* Symbolic link */ - if(H5Oget_info_by_name2(file, "grp1/soft", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file, "grp1/soft", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5O_TYPE_DATASET != oinfo2.type) { H5_FAILED(); HDprintf(" %d: Unexpected object type should have been a dataset\n", __LINE__); TEST_ERROR } /* end if */ - if(H5F_addr_ne(oinfo1.addr, oinfo2.addr)) { + if(H5Otoken_cmp(file, &oinfo1.token, &oinfo2.token, &token_cmp) < 0) FAIL_STACK_ERROR + if(token_cmp) { H5_FAILED(); HDputs(" Soft link test failed. Link seems not to point to the "); HDputs(" expected file location."); @@ -573,15 +689,15 @@ cklinks(hid_t fapl, hbool_t new_format) /* Dangling link */ H5E_BEGIN_TRY { - status = H5Oget_info_by_name2(file, "grp1/dangle", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); + status = H5Oget_info_by_name3(file, "grp1/dangle", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(status >= 0) { H5_FAILED(); HDputs(" H5Oget_info_by_name() should have failed for a dangling link."); TEST_ERROR } /* end if */ - if(H5Lget_info(file, "grp1/dangle", &linfo2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5L_TYPE_SOFT != linfo2.type) { + if(H5Lget_info2(file, "grp1/dangle", &linfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5L_TYPE_SOFT != linfo.type) { H5_FAILED(); HDprintf(" %d: Unexpected object type should have been a symbolic link\n", __LINE__); TEST_ERROR @@ -600,15 +716,15 @@ cklinks(hid_t fapl, hbool_t new_format) /* Recursive link */ H5E_BEGIN_TRY { - status = H5Oget_info_by_name2(file, "grp1/recursive", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); + status = H5Oget_info_by_name3(file, "grp1/recursive", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(status >= 0) { H5_FAILED(); HDputs(" H5Oget_info_by_name() should have failed for a recursive link."); TEST_ERROR } /* end if */ - if(H5Lget_info(file, "grp1/recursive", &linfo2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5L_TYPE_SOFT != linfo2.type) { + if(H5Lget_info2(file, "grp1/recursive", &linfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5L_TYPE_SOFT != linfo.type) { H5_FAILED(); HDprintf(" %d: Unexpected object type should have been a symbolic link\n", __LINE__); TEST_ERROR @@ -652,8 +768,9 @@ static int ck_new_links(hid_t fapl, hbool_t new_format) { hid_t file; - H5O_info_t oi_dset, oi_hard1, oi_hard2; + H5O_info2_t oi_dset, oi_hard1, oi_hard2; char filename[NAME_BUF_SIZE]; + int token_cmp1, token_cmp2; if(new_format) TESTING("new link queries (w/new group format)") @@ -665,9 +782,9 @@ ck_new_links(hid_t fapl, hbool_t new_format) if((file = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR /* Get hard link info */ - if(H5Oget_info_by_name2(file, "/grp1/dataset2", &oi_dset, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(file, "/grp1/hard1", &oi_hard1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(file, "/grp2/hard2", &oi_hard2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file, "/grp1/dataset2", &oi_dset, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file, "/grp1/hard1", &oi_hard1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file, "/grp2/hard2", &oi_hard2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR /* Check hard links */ if(H5O_TYPE_DATASET != oi_hard1.type || H5O_TYPE_DATASET != oi_hard2.type) { @@ -675,7 +792,10 @@ ck_new_links(hid_t fapl, hbool_t new_format) HDprintf(" %d: Unexpected object type should have been a dataset\n", __LINE__); TEST_ERROR } - if(H5F_addr_ne(oi_dset.addr, oi_hard1.addr) || H5F_addr_ne(oi_dset.addr, oi_hard2.addr)) { + + if(H5Otoken_cmp(file, &oi_dset.token, &oi_hard1.token, &token_cmp1) < 0) TEST_ERROR + if(H5Otoken_cmp(file, &oi_dset.token, &oi_hard2.token, &token_cmp2) < 0) TEST_ERROR + if(token_cmp1 || token_cmp2) { H5_FAILED(); HDputs(" Hard link test failed. Link seems not to point to the "); HDputs(" expected file location."); @@ -920,7 +1040,7 @@ test_lcpl(hid_t fapl, hbool_t new_format) hid_t dset_id = -1; hid_t type_id = -1; hid_t lcpl_id = -1; - H5L_info_t linfo; + H5L_info2_t linfo; char filename[1024]; hsize_t dims[2]; @@ -942,7 +1062,7 @@ test_lcpl(hid_t fapl, hbool_t new_format) if(H5Gclose(group_id) < 0) TEST_ERROR /* Check that its character encoding is the default */ - if(H5Lget_info(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5F_DEFAULT_CSET) TEST_ERROR /* Create and commit a datatype with the default LCPL */ @@ -951,7 +1071,7 @@ test_lcpl(hid_t fapl, hbool_t new_format) if(H5Tclose(type_id) < 0) TEST_ERROR /* Check that its character encoding is the default */ - if(H5Lget_info(file_id, "type", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "type", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5F_DEFAULT_CSET) TEST_ERROR /* Create a dataspace */ @@ -964,7 +1084,7 @@ test_lcpl(hid_t fapl, hbool_t new_format) if(H5Dclose(dset_id) < 0) TEST_ERROR /* Check that its character encoding is the default */ - if(H5Lget_info(file_id, "dataset", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "dataset", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5F_DEFAULT_CSET) TEST_ERROR /* Create a link creation property list with the UTF-8 character encoding */ @@ -976,7 +1096,7 @@ test_lcpl(hid_t fapl, hbool_t new_format) if(H5Gclose(group_id) < 0) TEST_ERROR /* Check that its character encoding is UTF-8 */ - if(H5Lget_info(file_id, "group2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "group2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR /* Create and commit a datatype with the new LCPL */ @@ -985,7 +1105,7 @@ test_lcpl(hid_t fapl, hbool_t new_format) if(H5Tclose(type_id) < 0) TEST_ERROR /* Check that its character encoding is UTF-8 */ - if(H5Lget_info(file_id, "type2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "type2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR /* Create a dataset using the new LCPL */ @@ -993,7 +1113,7 @@ test_lcpl(hid_t fapl, hbool_t new_format) if(H5Dclose(dset_id) < 0) TEST_ERROR /* Check that its character encoding is UTF-8 */ - if(H5Lget_info(file_id, "dataset2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "dataset2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR /* Create a new link to the dataset with a different character encoding. */ @@ -1004,35 +1124,35 @@ test_lcpl(hid_t fapl, hbool_t new_format) if(H5Lcreate_hard(file_id, "/dataset2", file_id, "/dataset2_link", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR /* Check that its character encoding is ASCII */ - if(H5Lget_info(file_id, "/dataset2_link", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "/dataset2_link", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5T_CSET_ASCII) TEST_ERROR /* Check that the first link's encoding hasn't changed */ - if(H5Lget_info(file_id, "/dataset2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "/dataset2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR /* Make sure that LCPLs work properly for other API calls: */ /* H5Lcreate_soft */ if(H5Pset_char_encoding(lcpl_id, H5T_CSET_UTF8) < 0) TEST_ERROR if(H5Lcreate_soft("dataset2", file_id, "slink_to_dset2", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Lget_info(file_id, "slink_to_dset2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "slink_to_dset2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR /* H5Lmove */ if(H5Pset_char_encoding(lcpl_id, H5T_CSET_ASCII) < 0) TEST_ERROR if(H5Lmove(file_id, "slink_to_dset2", file_id, "moved_slink", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Lget_info(file_id, "moved_slink", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "moved_slink", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5T_CSET_ASCII) TEST_ERROR /* H5Lcopy */ if(H5Pset_char_encoding(lcpl_id, H5T_CSET_UTF8) < 0) TEST_ERROR if(H5Lcopy(file_id, "moved_slink", file_id, "copied_slink", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Lget_info(file_id, "copied_slink", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "copied_slink", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR /* H5Lcreate_external */ if(H5Lcreate_external("filename", "path", file_id, "extlink", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Lget_info(file_id, "extlink", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "extlink", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR /* Close open IDs */ @@ -1328,8 +1448,8 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) hid_t fcpl_id=-1; /* Group creation property list ID */ hid_t lcpl_id=-1; hid_t lcpl2_id=-1; - H5O_info_t oinfo; - H5L_info_t linfo; + H5O_info2_t oinfo; + H5L_info2_t linfo; H5T_cset_t old_cset; int64_t old_corder; /* Creation order value of link */ time_t old_modification_time; @@ -1366,8 +1486,8 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) if(H5Gclose(group_id) < 0) TEST_ERROR /* Get the group's link's information */ - if(H5Lget_info(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR old_cset = linfo.cset; if(old_cset != H5T_CSET_UTF8) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR @@ -1385,8 +1505,8 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) if((file_id = H5Fopen(filename, H5F_ACC_RDWR, fapl_id)) < 0) TEST_ERROR /* Get the link's character set & modification time . They should be unchanged */ - if(H5Lget_info(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR if(old_cset != linfo.cset) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR @@ -1394,9 +1514,9 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) /* Create a new link to the group. It should have a different creation order value but the same modification time */ if(H5Lcreate_hard(file_id, "group", file_id, "group2", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(file_id, "group2", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file_id, "group2", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR - if(H5Lget_info(file_id, "group2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "group2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(old_corder == linfo.corder) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR if(linfo.corder != 1) TEST_ERROR @@ -1407,9 +1527,9 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) * should not change. */ if(H5Lcopy(file_id, "group", file_id, "group_copied", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(file_id, "group_copied", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file_id, "group_copied", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR - if(H5Lget_info(file_id, "group_copied", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "group_copied", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR if(linfo.corder != 2) TEST_ERROR @@ -1418,9 +1538,9 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) /* Move the link with the default property list. */ if(H5Lmove(file_id, "group_copied", file_id, "group_copied2", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(file_id, "group_copied2", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file_id, "group_copied2", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR - if(H5Lget_info(file_id, "group_copied2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "group_copied2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR if(linfo.corder != 3) TEST_ERROR @@ -1428,9 +1548,9 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) if(linfo.cset == H5T_CSET_UTF8) TEST_ERROR /* Check that the original link is unchanged */ - if(H5Oget_info_by_name2(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR - if(H5Lget_info(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR if(old_corder != linfo.corder) TEST_ERROR if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR @@ -1439,9 +1559,9 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) * Its creation order value will change, but modification time should not * change. */ if(H5Lmove(file_id, "group", file_id, "group_moved", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(file_id, "group_moved", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file_id, "group_moved", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR - if(H5Lget_info(file_id, "group_moved", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "group_moved", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR if(linfo.corder != 4) TEST_ERROR @@ -1450,9 +1570,9 @@ test_move_preserves(hid_t fapl_id, hbool_t new_format) /* Move the link again using the default property list. */ if(H5Lmove(file_id, "group_moved", file_id, "group_moved_again", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(file_id, "group_moved_again", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(file_id, "group_moved_again", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR if(old_modification_time != oinfo.mtime) TEST_ERROR - if(H5Lget_info(file_id, "group_moved_again", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(file_id, "group_moved_again", &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder_valid != TRUE) TEST_ERROR if(linfo.corder != 5) TEST_ERROR @@ -1625,6 +1745,3910 @@ error: } H5E_END_TRY; return 1; } /* end test_deprec() */ + +/*------------------------------------------------------------------------- + * Function: cklinks_deprec + * + * Purpose: Open the file created in the first step and check that the + * links look correct. + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +cklinks_deprec(hid_t fapl, hbool_t new_format) +{ + hid_t file; + H5O_info1_t oinfo1, oinfo2; + H5L_info1_t linfo; + char linkval[LINK_BUF_SIZE]; + char filename[NAME_BUF_SIZE]; + herr_t status; + + if(new_format) + TESTING("link queries using deprecated routines (w/new group format)") + else + TESTING("link queries using deprecated routines") + + /* Open the file */ + h5_fixname(FILENAME[1], fapl, filename, sizeof filename); + if((file = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) FAIL_STACK_ERROR + + /* Hard link */ + if(H5Oget_info_by_name2(file, "d1", &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name2(file, "grp1/hard", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5O_TYPE_DATASET != oinfo2.type) { + H5_FAILED(); + HDprintf(" %d: Unexpected object type should have been a dataset\n", __LINE__); + TEST_ERROR + } /* end if */ + if(H5F_addr_ne(oinfo1.addr, oinfo2.addr)) { + H5_FAILED(); + HDputs(" Hard link test failed. Link seems not to point to the "); + HDputs(" expected file location."); + TEST_ERROR + } /* end if */ + if(H5Lexists(file, "/", H5P_DEFAULT) != TRUE) FAIL_STACK_ERROR + if(H5Lexists(file, "d1", H5P_DEFAULT) != TRUE) FAIL_STACK_ERROR + if(H5Lexists(file, "grp1/hard", H5P_DEFAULT) != TRUE) FAIL_STACK_ERROR + if(H5Lexists(file, "/grp1", H5P_DEFAULT) != TRUE) FAIL_STACK_ERROR + if(H5Lexists(file, "/grp1/hard", H5P_DEFAULT) != TRUE) FAIL_STACK_ERROR + H5E_BEGIN_TRY { + status = H5Lexists(file, "no_grp1/hard", H5P_DEFAULT); + } H5E_END_TRY; + if(status >= 0) { + H5_FAILED(); + HDputs(" H5Lexists() should have failed for a path with missing components."); + TEST_ERROR + } /* end if */ + H5E_BEGIN_TRY { + status = H5Lexists(file, "/no_grp1/hard", H5P_DEFAULT); + } H5E_END_TRY; + if(status >= 0) { + H5_FAILED(); + HDputs(" H5Lexists() should have failed for a path with missing components."); + TEST_ERROR + } /* end if */ + + /* Symbolic link */ + if(H5Oget_info_by_name2(file, "grp1/soft", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5O_TYPE_DATASET != oinfo2.type) { + H5_FAILED(); + HDprintf(" %d: Unexpected object type should have been a dataset\n", __LINE__); + TEST_ERROR + } /* end if */ + if(H5F_addr_ne(oinfo1.addr, oinfo2.addr)) { + H5_FAILED(); + HDputs(" Soft link test failed. Link seems not to point to the "); + HDputs(" expected file location."); + TEST_ERROR + } /* end if */ + if(H5Lget_val(file, "grp1/soft", linkval, sizeof linkval, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(HDstrcmp(linkval, "/d1")) { + H5_FAILED(); + HDputs(" Soft link test failed. Wrong link value"); + TEST_ERROR + } /* end if */ + if(H5Lexists(file, "grp1/soft", H5P_DEFAULT) != TRUE) FAIL_STACK_ERROR + + /* Dangling link */ + H5E_BEGIN_TRY { + status = H5Oget_info_by_name2(file, "grp1/dangle", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); + } H5E_END_TRY; + if(status >= 0) { + H5_FAILED(); + HDputs(" H5Oget_info_by_name() should have failed for a dangling link."); + TEST_ERROR + } /* end if */ + if(H5Lget_info1(file, "grp1/dangle", &linfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5L_TYPE_SOFT != linfo.type) { + H5_FAILED(); + HDprintf(" %d: Unexpected object type should have been a symbolic link\n", __LINE__); + TEST_ERROR + } /* end if */ + if(H5Lget_val(file, "grp1/dangle", linkval, sizeof linkval, H5P_DEFAULT) < 0) { + H5_FAILED(); + HDprintf(" %d: Can't retrieve link value\n", __LINE__); + TEST_ERROR + } /* end if */ + if(HDstrcmp(linkval, "foobar")) { + H5_FAILED(); + HDputs(" Dangling link test failed. Wrong link value"); + TEST_ERROR + } /* end if */ + if(H5Lexists(file, "grp1/dangle", H5P_DEFAULT) != TRUE) FAIL_STACK_ERROR + + /* Recursive link */ + H5E_BEGIN_TRY { + status = H5Oget_info_by_name2(file, "grp1/recursive", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); + } H5E_END_TRY; + if(status >= 0) { + H5_FAILED(); + HDputs(" H5Oget_info_by_name() should have failed for a recursive link."); + TEST_ERROR + } /* end if */ + if(H5Lget_info1(file, "grp1/recursive", &linfo, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5L_TYPE_SOFT != linfo.type) { + H5_FAILED(); + HDprintf(" %d: Unexpected object type should have been a symbolic link\n", __LINE__); + TEST_ERROR + } /* end if */ + if(H5Lget_val(file, "grp1/recursive", linkval, sizeof linkval, H5P_DEFAULT) < 0) { + H5_FAILED(); + HDprintf(" %d: Can't retrieve link value\n", __LINE__); + TEST_ERROR + } /* end if */ + if(HDstrcmp(linkval, "/grp1/recursive")) { + H5_FAILED(); + HDputs(" Recursive link test failed. Wrong link value"); + TEST_ERROR + } /* end if */ + + /* Non-existent link */ + if(H5Lexists(file, "foobar", H5P_DEFAULT) == TRUE) FAIL_STACK_ERROR + + /* Cleanup */ + if(H5Fclose(file) < 0) FAIL_STACK_ERROR + + PASSED(); + return SUCCEED; + +error: + return FAIL; +} /* end chklinks_deprec() */ + +/*------------------------------------------------------------------------- + * Function: test_lcpl_deprec + * + * Purpose: Tests Link Creation Property Lists + * + * Return: Success: 0 + * Failure: number of errors + *------------------------------------------------------------------------- + */ +static int +test_lcpl_deprec(hid_t fapl, hbool_t new_format) +{ + hid_t file_id = -1; + hid_t group_id = -1; + hid_t space_id = -1; + hid_t dset_id = -1; + hid_t type_id = -1; + hid_t lcpl_id = -1; + H5L_info1_t linfo; + char filename[1024]; + hsize_t dims[2]; + + if(new_format) + TESTING("link creation property lists using deprecated routines (w/new group format)") + else + TESTING("link creation property lists using deprecated routines") + + /* Actually, intermediate group creation is tested elsewhere (tmisc). + * Here we only need to test the character encoding property */ + + /* Create file */ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + + if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create and link a group with the default LCPL */ + if((group_id = H5Gcreate2(file_id, "/group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Check that its character encoding is the default */ + if(H5Lget_info1(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5F_DEFAULT_CSET) TEST_ERROR + + /* Create and commit a datatype with the default LCPL */ + if((type_id = H5Tcopy(H5T_NATIVE_INT)) < 0) TEST_ERROR + if(H5Tcommit2(file_id, "/type", type_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Tclose(type_id) < 0) TEST_ERROR + + /* Check that its character encoding is the default */ + if(H5Lget_info1(file_id, "type", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5F_DEFAULT_CSET) TEST_ERROR + + /* Create a dataspace */ + dims[0] = H5L_DIM1; + dims[1] = H5L_DIM2; + if((space_id=H5Screate_simple(2 ,dims, NULL)) < 0) TEST_ERROR + + /* Create a dataset using the default LCPL */ + if((dset_id = H5Dcreate2(file_id, "/dataset", H5T_NATIVE_INT, space_id, H5P_DEFAULT, dcpl_g, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Dclose(dset_id) < 0) TEST_ERROR + + /* Check that its character encoding is the default */ + if(H5Lget_info1(file_id, "dataset", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5F_DEFAULT_CSET) TEST_ERROR + + /* Create a link creation property list with the UTF-8 character encoding */ + if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) TEST_ERROR + if(H5Pset_char_encoding(lcpl_id, H5T_CSET_UTF8) < 0) TEST_ERROR + + /* Create and link a group with the new LCPL */ + if((group_id = H5Gcreate2(file_id, "/group2", lcpl_id, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Check that its character encoding is UTF-8 */ + if(H5Lget_info1(file_id, "group2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR + + /* Create and commit a datatype with the new LCPL */ + if((type_id = H5Tcopy(H5T_NATIVE_INT)) < 0) TEST_ERROR + if(H5Tcommit2(file_id, "/type2", type_id, lcpl_id, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Tclose(type_id) < 0) TEST_ERROR + + /* Check that its character encoding is UTF-8 */ + if(H5Lget_info1(file_id, "type2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR + + /* Create a dataset using the new LCPL */ + if((dset_id = H5Dcreate2(file_id, "/dataset2", H5T_NATIVE_INT, space_id, lcpl_id, dcpl_g, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Dclose(dset_id) < 0) TEST_ERROR + + /* Check that its character encoding is UTF-8 */ + if(H5Lget_info1(file_id, "dataset2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR + + /* Create a new link to the dataset with a different character encoding. */ + if(H5Pclose(lcpl_id) < 0) TEST_ERROR + if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) TEST_ERROR + if(H5Pset_char_encoding(lcpl_id, H5T_CSET_ASCII) < 0) TEST_ERROR + + if(H5Lcreate_hard(file_id, "/dataset2", file_id, "/dataset2_link", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR + + /* Check that its character encoding is ASCII */ + if(H5Lget_info1(file_id, "/dataset2_link", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5T_CSET_ASCII) TEST_ERROR + + /* Check that the first link's encoding hasn't changed */ + if(H5Lget_info1(file_id, "/dataset2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR + + /* Make sure that LCPLs work properly for other API calls: */ + /* H5Lcreate_soft */ + if(H5Pset_char_encoding(lcpl_id, H5T_CSET_UTF8) < 0) TEST_ERROR + if(H5Lcreate_soft("dataset2", file_id, "slink_to_dset2", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info1(file_id, "slink_to_dset2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR + + /* H5Lmove */ + if(H5Pset_char_encoding(lcpl_id, H5T_CSET_ASCII) < 0) TEST_ERROR + if(H5Lmove(file_id, "slink_to_dset2", file_id, "moved_slink", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info1(file_id, "moved_slink", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5T_CSET_ASCII) TEST_ERROR + + /* H5Lcopy */ + if(H5Pset_char_encoding(lcpl_id, H5T_CSET_UTF8) < 0) TEST_ERROR + if(H5Lcopy(file_id, "moved_slink", file_id, "copied_slink", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info1(file_id, "copied_slink", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR + + /* H5Lcreate_external */ + if(H5Lcreate_external("filename", "path", file_id, "extlink", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info1(file_id, "extlink", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR + + /* Close open IDs */ + if(H5Pclose(lcpl_id) < 0) TEST_ERROR + if(H5Sclose(space_id) < 0) TEST_ERROR + if(H5Fclose(file_id) < 0) TEST_ERROR + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Gclose(group_id); + H5Dclose(dset_id); + H5Tclose(type_id); + H5Pclose(lcpl_id); + H5Sclose(space_id); + H5Fclose(file_id); + } H5E_END_TRY; + return 1; +} /* end test_lcpl_deprec() */ + +/*------------------------------------------------------------------------- + * Function: test_move_preserves_deprec + * + * Purpose: Tests that moving and renaming links preserves their + * properties. + * + * Return: Success: 0 + * Failure: number of errors + *------------------------------------------------------------------------- + */ +static int +test_move_preserves_deprec(hid_t fapl_id, hbool_t new_format) +{ + hid_t file_id=-1; + hid_t group_id=-1; + hid_t fcpl_id=-1; /* Group creation property list ID */ + hid_t lcpl_id=-1; + hid_t lcpl2_id=-1; + H5O_info1_t oinfo; + H5L_info1_t linfo; + H5T_cset_t old_cset; + int64_t old_corder; /* Creation order value of link */ + time_t old_modification_time; + time_t curr_time; + unsigned crt_order_flags; /* Status of creation order info for GCPL */ + char filename[1024]; + + if(new_format) + TESTING("moving and copying links using deprecated routines preserves their properties (w/new group format)") + else + TESTING("moving and copying links using deprecated routines preserves their properties") + + /* Create a file creation property list with creation order stored for links + * in the root group + */ + if((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) TEST_ERROR + if(H5Pget_link_creation_order(fcpl_id, &crt_order_flags) < 0) TEST_ERROR + if(crt_order_flags != 0) TEST_ERROR + if(H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED) < 0) TEST_ERROR + if(H5Pget_link_creation_order(fcpl_id, &crt_order_flags) < 0) TEST_ERROR + if(crt_order_flags != H5P_CRT_ORDER_TRACKED) TEST_ERROR + + /* Create file */ + /* (with creation order tracking for the root group) */ + h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename); + if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) TEST_ERROR + + /* Create a link creation property list with the UTF-8 character encoding */ + if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) TEST_ERROR + if(H5Pset_char_encoding(lcpl_id, H5T_CSET_UTF8) < 0) TEST_ERROR + + /* Create a group with that lcpl */ + if((group_id = H5Gcreate2(file_id, "group", lcpl_id, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Get the group's link's information */ + if(H5Lget_info1(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + old_cset = linfo.cset; + if(old_cset != H5T_CSET_UTF8) TEST_ERROR + if(linfo.corder_valid != TRUE) TEST_ERROR + old_corder = linfo.corder; + if(old_corder != 0) TEST_ERROR + old_modification_time = oinfo.mtime; + + /* If this test happens too quickly, the times will all be the same. Make sure the time changes. */ + curr_time = HDtime(NULL); + while(HDtime(NULL) <= curr_time) + ; + + /* Close the file and reopen it */ + if(H5Fclose(file_id) < 0) TEST_ERROR + if((file_id = H5Fopen(filename, H5F_ACC_RDWR, fapl_id)) < 0) TEST_ERROR + + /* Get the link's character set & modification time . They should be unchanged */ + if(H5Lget_info1(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(old_modification_time != oinfo.mtime) TEST_ERROR + if(old_cset != linfo.cset) TEST_ERROR + if(linfo.corder_valid != TRUE) TEST_ERROR + if(old_corder != linfo.corder) TEST_ERROR + + /* Create a new link to the group. It should have a different creation order value but the same modification time */ + if(H5Lcreate_hard(file_id, "group", file_id, "group2", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group2", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(old_modification_time != oinfo.mtime) TEST_ERROR + if(H5Lget_info1(file_id, "group2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(old_corder == linfo.corder) TEST_ERROR + if(linfo.corder_valid != TRUE) TEST_ERROR + if(linfo.corder != 1) TEST_ERROR + if(linfo.cset != H5T_CSET_ASCII) TEST_ERROR + + /* Copy the first link to a UTF-8 name. + * Its creation order value should be different, but modification time + * should not change. + */ + if(H5Lcopy(file_id, "group", file_id, "group_copied", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group_copied", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(old_modification_time != oinfo.mtime) TEST_ERROR + if(H5Lget_info1(file_id, "group_copied", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder_valid != TRUE) TEST_ERROR + if(linfo.corder != 2) TEST_ERROR + + /* Check that its character encoding is UTF-8 */ + if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR + + /* Move the link with the default property list. */ + if(H5Lmove(file_id, "group_copied", file_id, "group_copied2", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group_copied2", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(old_modification_time != oinfo.mtime) TEST_ERROR + if(H5Lget_info1(file_id, "group_copied2", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder_valid != TRUE) TEST_ERROR + if(linfo.corder != 3) TEST_ERROR + + /* Check that its character encoding is not UTF-8 */ + if(linfo.cset == H5T_CSET_UTF8) TEST_ERROR + + /* Check that the original link is unchanged */ + if(H5Oget_info_by_name2(file_id, "group", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(old_modification_time != oinfo.mtime) TEST_ERROR + if(H5Lget_info1(file_id, "group", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder_valid != TRUE) TEST_ERROR + if(old_corder != linfo.corder) TEST_ERROR + if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR + + /* Move the first link to a UTF-8 name. + * Its creation order value will change, but modification time should not + * change. */ + if(H5Lmove(file_id, "group", file_id, "group_moved", lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group_moved", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(old_modification_time != oinfo.mtime) TEST_ERROR + if(H5Lget_info1(file_id, "group_moved", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder_valid != TRUE) TEST_ERROR + if(linfo.corder != 4) TEST_ERROR + + /* Check that its character encoding is UTF-8 */ + if(linfo.cset != H5T_CSET_UTF8) TEST_ERROR + + /* Move the link again using the default property list. */ + if(H5Lmove(file_id, "group_moved", file_id, "group_moved_again", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(file_id, "group_moved_again", &oinfo, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR + if(old_modification_time != oinfo.mtime) TEST_ERROR + if(H5Lget_info1(file_id, "group_moved_again", &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder_valid != TRUE) TEST_ERROR + if(linfo.corder != 5) TEST_ERROR + + /* Check that its character encoding is not UTF-8 */ + if(linfo.cset == H5T_CSET_UTF8) TEST_ERROR + + /* Close open IDs */ + if(H5Pclose(fcpl_id) < 0) TEST_ERROR + if(H5Pclose(lcpl_id) < 0) TEST_ERROR + if(H5Fclose(file_id) < 0) TEST_ERROR + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Pclose(fcpl_id); + H5Pclose(lcpl_id); + H5Pclose(lcpl2_id); + H5Gclose(group_id); + H5Fclose(file_id); + } H5E_END_TRY; + return 1; +} /* end test_move_preserves_deprec() */ + +/*------------------------------------------------------------------------- + * Function: external_link_root_deprec + * + * Purpose: Build a file with external link to root group in external file + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +external_link_root_deprec(hid_t fapl, hbool_t new_format) +{ + hid_t fid = -1; /* File ID */ + hid_t gid = -1, gid2 = -1; /* Group IDs */ + H5L_info1_t linfo; /* Link information */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char filename1[NAME_BUF_SIZE]; + char filename2[NAME_BUF_SIZE]; + const char *file; /* File from external link */ + const char *path; /* Path from external link */ + + if(new_format) + TESTING("external link to root using deprecated routines (w/new group format)") + else + TESTING("external link to root using deprecated routines") + + /* Set up filenames */ + h5_fixname(FILENAME[3], fapl, filename1, sizeof filename1); + h5_fixname(FILENAME[4], fapl, filename2, sizeof filename2); + + /* Create file to point to */ + if((fid = H5Fcreate(filename1, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Close file */ + if(H5Fclose(fid) < 0) TEST_ERROR + + /* Check that external links are registered with the library */ + if(H5Lis_registered(H5L_TYPE_EXTERNAL) != TRUE) TEST_ERROR + + /* Create file with link to first file */ + if((fid = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create external link to object in first file */ + if(H5Lcreate_external(filename1, "/", fid, "ext_link", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + + /* Check information for external link */ + if(H5Lget_info1(fid, "ext_link", &linfo, H5P_DEFAULT) < 0) goto error; + if(H5L_TYPE_EXTERNAL != linfo.type) { + H5_FAILED(); + HDputs(" Unexpected object type - should have been an external link"); + goto error; + } + if(H5Lget_val(fid, "ext_link", objname, sizeof(objname), H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lunpack_elink_val(objname, linfo.u.val_size, NULL, &file, &path) < 0) TEST_ERROR + if(HDstrcmp(file, filename1)) { + H5_FAILED(); + HDputs(" External link file name incorrect"); + goto error; + } + if(HDstrcmp(path, "/")) { + H5_FAILED(); + HDputs(" External link path incorrect"); + goto error; + } + + /* Create external link to object in first file */ + /* (add a few extra '/'s to make certain library normalizes external link object names) */ + if(H5Lcreate_external(filename1, "///", fid, "ext_link2", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + + /* Check information for external link */ + if(H5Lget_info1(fid, "ext_link", &linfo, H5P_DEFAULT) < 0) goto error; + if(H5L_TYPE_EXTERNAL != linfo.type) { + H5_FAILED(); + HDputs(" Unexpected object type - should have been an external link"); + goto error; + } + if(H5Lget_val(fid, "ext_link", objname, sizeof(objname), H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lunpack_elink_val(objname, linfo.u.val_size, NULL, &file, &path) < 0) TEST_ERROR + if(HDstrcmp(file, filename1)) { + H5_FAILED(); + HDputs(" External link file name incorrect"); + goto error; + } + if(HDstrcmp(path, "/")) { + H5_FAILED(); + HDputs(" External link path incorrect"); + goto error; + } + + /* Close and re-open file to ensure that data is written to disk */ + if(H5Fclose(fid) < 0) TEST_ERROR + if((fid = H5Fopen(filename2, H5F_ACC_RDWR, fapl)) < 0) TEST_ERROR + + /* Open object through external link */ + if((gid = H5Gopen2(fid, "ext_link", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + + /* Check name */ + if(H5Iget_name(gid, objname, (size_t)NAME_BUF_SIZE) < 0) TEST_ERROR + if(HDstrcmp(objname, "/")) TEST_ERROR + + /* Create object in external file */ + if((gid2 = H5Gcreate2(gid, "new_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Close group in external file */ + if(H5Gclose(gid2) < 0) TEST_ERROR + + /* Close external object (lets first file close) */ + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Create a new object using H5Gcreate2 through the external link + * directly + */ + if((gid = H5Gcreate2(fid, "ext_link/newer_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Close file and group */ + if(H5Gclose(gid) < 0) TEST_ERROR + if(H5Fclose(fid) < 0) TEST_ERROR + + /* Check that all file IDs have been closed */ + if(H5I_nmembers(H5I_FILE) != 0) TEST_ERROR + H5F_sfile_assert_num(0); + + /* Open first file again with read-only access and check on objects created */ + if((fid = H5Fopen(filename1, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR + + /* Open objects created through external link */ + if((gid = H5Gopen2(fid, "new_group", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if((gid2 = H5Gopen2(fid, "newer_group", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + + /* Check names */ + if(H5Iget_name(gid, objname, (size_t)NAME_BUF_SIZE) < 0) TEST_ERROR + if(HDstrcmp(objname, "/new_group")) TEST_ERROR + if(H5Iget_name(gid2, objname, (size_t)NAME_BUF_SIZE) < 0) TEST_ERROR + if(HDstrcmp(objname, "/newer_group")) TEST_ERROR + + /* Close opened objects */ + if(H5Gclose(gid) < 0) TEST_ERROR + if(H5Gclose(gid2) < 0) TEST_ERROR + + /* Close first file */ + if(H5Fclose(fid) < 0) TEST_ERROR + + /* Check that all file IDs have been closed */ + if(H5I_nmembers(H5I_FILE) != 0) TEST_ERROR + H5F_sfile_assert_num(0); + + /* Verify that new objects can't be created through a read-only external + * link. + */ + if((fid = H5Fopen(filename2, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR + + H5E_BEGIN_TRY { + gid = H5Gcreate2(fid, "ext_link/readonly_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + } H5E_END_TRY + if(gid >= 0) TEST_ERROR + + /* Close second file again */ + if(H5Fclose(fid) < 0) TEST_ERROR + + /* Check that all file IDs have been closed */ + if(H5I_nmembers(H5I_FILE) != 0) TEST_ERROR + H5F_sfile_assert_num(0); + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Gclose (gid2); + H5Gclose (gid); + H5Fclose (fid); + } H5E_END_TRY; + return FAIL; +} /* end external_link_root_deprec() */ + +/*------------------------------------------------------------------------- + * Function: external_link_query_deprec + * + * Purpose: Query file & object names for external links, as well as + * information from H5Gget_obj_info + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +external_link_query_deprec(hid_t fapl, hbool_t new_format) +{ + hid_t fid = -1; /* File ID */ + hid_t gid = -1; /* Group IDs */ + const char *file_name; /* Name of the file the external link points to */ + const char *object_name; /* Name of the object the external link points to */ + H5O_info1_t oi; /* Object information */ + H5L_info1_t li; /* Link information */ + char filename1[NAME_BUF_SIZE], + filename2[NAME_BUF_SIZE], /* Names of files to externally link across */ + query_buf[NAME_BUF_SIZE]; /* Buffer to hold query result */ + + if(new_format) + TESTING("query aspects of external link using deprecated routines (w/new group format)") + else + TESTING("query aspects of external link using deprecated routines") + + /* Set up filenames */ + h5_fixname(FILENAME[3], fapl, filename1, sizeof filename1); + h5_fixname(FILENAME[4], fapl, filename2, sizeof filename2); + + /* Create first file, with external link to object in second file */ + if((fid = H5Fcreate(filename1, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create external link */ + /* (add a few extra '/'s to make certain library normalizes external link object names) */ + if(H5Lcreate_external(filename2, "///dst//", fid, "src", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + + /* Get size of buffer for external link */ + if(H5Lget_info1(fid, "src", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(li.u.val_size != (1 + (HDstrlen(filename2) + 1) + (HDstrlen("/dst") + 1))) TEST_ERROR + if (H5L_TYPE_EXTERNAL != li.type) { + H5_FAILED(); + HDputs(" Unexpected link class - should have been an external link"); + goto error; + } + + /* Close file */ + if(H5Fclose(fid) < 0) TEST_ERROR + + /* Create second file to point to */ + if((fid = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create object to link to */ + if((gid = H5Gcreate2(fid, "dst", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Close file */ + if(H5Fclose(fid) < 0) TEST_ERROR + + /* Open first file */ + if((fid = H5Fopen(filename1, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR + + /* Get size of buffer for external link */ + if(H5Lget_info1(fid, "src", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(li.u.val_size != (1 + (HDstrlen(filename2) + 1) + (HDstrlen("/dst") + 1))) TEST_ERROR + if(H5L_TYPE_EXTERNAL != li.type) { + H5_FAILED(); + HDputs(" Unexpected link class - should have been an external link"); + goto error; + } + + /* Get information for external link. It should be two strings right after each other */ + if(H5Lget_val(fid, "src", query_buf, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + + /* Extract the file and object names from the buffer */ + if(H5Lunpack_elink_val(query_buf, li.u.val_size, NULL, &file_name, &object_name) < 0) TEST_ERROR + + /* Compare the file and object names */ + if(HDstrcmp(file_name, filename2)) TEST_ERROR + if(HDstrcmp(object_name, "/dst")) TEST_ERROR + + /* Query information about object that external link points to */ + if(H5Oget_info_by_name2(fid, "src", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5O_TYPE_GROUP != oi.type) { + H5_FAILED(); + HDputs(" Unexpected object type - should have been a group"); + goto error; + } + + /* Close first file */ + if(H5Fclose(fid) < 0) TEST_ERROR + + /* Make sure that passing in NULLs to H5Lunpack_elink_val works */ + if(H5Lunpack_elink_val(query_buf, li.u.val_size, NULL, NULL, NULL) < 0) TEST_ERROR + + /* Make sure that bogus cases trigger errors in H5Lunpack_elink_val */ + H5E_BEGIN_TRY { + if(H5Lunpack_elink_val(query_buf, li.u.val_size - 1, NULL, NULL, NULL) >= 0) TEST_ERROR + } H5E_END_TRY + H5E_BEGIN_TRY { + if(H5Lunpack_elink_val(query_buf, (size_t)0, NULL, NULL, NULL) >= 0) TEST_ERROR + } H5E_END_TRY + H5E_BEGIN_TRY { + if(H5Lunpack_elink_val(NULL, (size_t)0, NULL, NULL, NULL) >= 0) TEST_ERROR + } H5E_END_TRY + H5E_BEGIN_TRY { + if(H5Lunpack_elink_val(NULL, (size_t)1000, NULL, NULL, NULL) >= 0) TEST_ERROR + } H5E_END_TRY + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Gclose(gid); + H5Fclose(fid); + } H5E_END_TRY; + return FAIL; +} /* end external_link_query_deprec() */ + +/*------------------------------------------------------------------------- + * Function: external_link_closing_deprec + * + * Purpose: Test that files are closed correctly when traversing + * external links. + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +external_link_closing_deprec(hid_t fapl, hbool_t new_format) +{ + hid_t fid1 = (-1), fid2 = (-1), fid3 = (-1), fid4=(-1); + hid_t gid=(-1), tid=(-1), tid2=(-1), sid=(-1), did=(-1); + hid_t lcpl_id=(-1); + hsize_t dims[2]; + char filename1[NAME_BUF_SIZE], + filename2[NAME_BUF_SIZE], + filename3[NAME_BUF_SIZE], + filename4[NAME_BUF_SIZE], /* Names of files to externally link across */ + buf[NAME_BUF_SIZE]; /* misc. buffer */ + H5L_info1_t li; + H5O_info1_t oi; + hobj_ref_t obj_ref; + + if(new_format) + TESTING("that external files are closed during traversal (w/new group format)") + else + TESTING("that external files are closed during traversal") + + /* In this test, external links will go from file1 to file2 and from + * file2 to file3. + * Test that all functions that can traverse external files close + * the files they open. + * Test that providing unusual paths containing external links can't + * make HDF5 forget to close a file it opened. + */ + + /* Set up filenames */ + h5_fixname(FILENAME[3], fapl, filename1, sizeof filename1); + h5_fixname(FILENAME[4], fapl, filename2, sizeof filename2); + h5_fixname(FILENAME[5], fapl, filename3, sizeof filename3); + h5_fixname(FILENAME[6], fapl, filename4, sizeof filename4); + + /* Create four files */ + if((fid1 = H5Fcreate(filename1, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + if((fid2 = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + if((fid3 = H5Fcreate(filename3, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + if((fid4 = H5Fcreate(filename4, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create a dataspace and a datatype so we can create/commit a dataset/datatype in the files */ + dims[0] = 2; + dims[1] = 2; + if((sid = H5Screate_simple(2, dims, NULL)) < 0) TEST_ERROR + if((tid = H5Tcopy(H5T_NATIVE_INT)) < 0) TEST_ERROR + if((tid2 = H5Tcopy(H5T_NATIVE_INT)) < 0) TEST_ERROR + + /* Create external links from each file to the next */ + if(H5Lcreate_external(filename2, "/", fid1, "elink", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lcreate_external(filename3, "/", fid2, "elink", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lcreate_external(filename4, "/", fid3, "elink", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + + /* Close all files but the first */ + if(H5Fclose(fid4) < 0) TEST_ERROR + if(H5Fclose(fid3) < 0) TEST_ERROR + if(H5Fclose(fid2) < 0) TEST_ERROR + + /* Test creating each kind of object */ + if((gid = H5Gcreate2(fid1, "elink/elink/elink/group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Tcommit2(fid1, "elink/elink/elink/type1", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if((did = H5Dcreate2(fid1, "elink/elink/elink/dataset1", tid2, sid, H5P_DEFAULT, dcpl_g, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Close objects */ + if(H5Gclose(gid) < 0) TEST_ERROR + if(H5Tclose(tid) < 0) TEST_ERROR + if(H5Dclose(did) < 0) TEST_ERROR + + /* Test that getting info works */ + if(H5Lget_info1(fid1, "elink/elink/elink/type1", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info1(fid1, "elink/elink/elink", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(fid1, "elink/elink/elink/type1", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name2(fid1, "elink/elink/elink", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + + /* Test move */ + if(H5Lmove(fid1, "elink/elink/elink/group1", fid1, + "elink/elink/elink/group1_moved", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + + /* Open file 4 so we can do some fancy things */ + if((fid4 = H5Fopen(filename4, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR + if(H5Lmove(fid1, "elink/elink/elink/type1", fid4, + "type1_moved", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lmove(fid4, "dataset1", fid1, + "elink/elink/elink/dataset1_moved", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + /* Close file 4 again */ + if(H5Fclose(fid4) < 0) FAIL_STACK_ERROR + + /* Test copy (as of this test, it uses the same code as move) */ + if(H5Lcopy(fid1, "elink/elink/elink", fid1, + "elink/elink/elink_copied", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcopy(fid1, "elink/elink/elink", fid1, + "elink/elink/elink/elink_copied2", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + /* Test H5Gset and get comment */ + if(H5Oset_comment_by_name(fid1, "elink/elink/elink/group1_moved", "comment", H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_comment_by_name(fid1, "elink/elink/elink/group1_moved", buf, sizeof(buf), H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(HDstrcmp(buf, "comment")) TEST_ERROR + + /* Test H5*open */ + if((gid = H5Gopen2(fid1, "elink/elink/elink/group1_moved", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if((tid = H5Topen2(fid1, "elink/elink/elink/type1_moved", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if((did = H5Dopen2(fid1, "elink/elink/elink/dataset1_moved", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + /* Close objects */ + if(H5Gclose(gid) < 0) FAIL_STACK_ERROR + if(H5Tclose(tid) < 0) FAIL_STACK_ERROR + if(H5Dclose(did) < 0) FAIL_STACK_ERROR + + /* Test H5*open2 */ + if((gid = H5Gopen2(fid1, "elink/elink/elink/group1_moved", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if((tid = H5Topen2(fid1, "elink/elink/elink/type1_moved", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if((did = H5Dopen2(fid1, "elink/elink/elink/dataset1_moved", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + /* Close objects */ + if(H5Gclose(gid) < 0) FAIL_STACK_ERROR + if(H5Tclose(tid) < 0) FAIL_STACK_ERROR + if(H5Dclose(did) < 0) FAIL_STACK_ERROR + + /* Test H5Oopen */ + if((did = H5Oopen(fid1, "elink/elink/elink/dataset1_moved", H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Dclose(did) < 0) TEST_ERROR + + /* Test H5Fmount */ + if((gid = H5Gcreate2(fid1, "elink/elink/elink/mnt", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + H5E_BEGIN_TRY { + if(H5Fmount(fid1, "elink/elink/elink/mnt", fid1, H5P_DEFAULT) >= 0) TEST_ERROR + if(H5Funmount(fid1, "elink/elink/elink/mnt") >= 0) TEST_ERROR + } H5E_END_TRY + + /* Test H5Rcreate */ + if(H5Rcreate(&obj_ref, fid1, "elink/elink/elink/type1_moved", H5R_OBJECT, (hid_t)(-1)) < 0) TEST_ERROR + + /* Test unlink */ + if(H5Ldelete(fid1, "elink/elink/elink/group1_moved", H5P_DEFAULT) < 0) TEST_ERROR + if(H5Ldelete(fid1, "elink/elink/elink/type1_moved", H5P_DEFAULT) < 0) TEST_ERROR + if(H5Ldelete(fid1, "elink/elink/elink/dataset1_moved", H5P_DEFAULT) < 0) TEST_ERROR + if(H5Ldelete(fid1, "elink/elink/elink_copied", H5P_DEFAULT) < 0) TEST_ERROR + if(H5Ldelete(fid1, "elink/elink/elink/elink_copied2", H5P_DEFAULT) < 0) TEST_ERROR + + /* We've tested that the various functions above don't leave files open. + * Now test that we can't confuse HDF5 by giving unusual paths with external links + */ + /* Create an external link that points to another external link */ + if((fid2 = H5Fopen(filename2, H5F_ACC_RDWR, fapl)) < 0) TEST_ERROR + if(H5Lcreate_external(filename3, "/elink", fid2, "elink2", + H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Fclose(fid2) < 0) TEST_ERROR + + /* Do an external link traversal that recursively calls another external link. */ + if((gid = H5Gcreate2(fid1, "elink/elink2/group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Create two more groups so that the last three elements in the path are + * all within the same external file + */ + if((gid = H5Gcreate2(fid1, "elink/elink2/group2/group3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + if((gid = H5Gcreate2(fid1, "elink/elink2/group2/group3/group4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + if(H5Oget_info_by_name2(fid1, "elink/elink2/group2/group3/group4", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + + /* Add a few regular groups and a soft link in file2 using intermediate group creation */ + if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) TEST_ERROR + if(H5Pset_create_intermediate_group(lcpl_id, TRUE) < 0) TEST_ERROR + if(H5Lcreate_soft("/elink2", fid1, "elink/file2group1/file2group2/slink", + lcpl_id, H5P_DEFAULT) < 0) TEST_ERROR + + /* Try to traverse this path. There are three soft traversals in a row; + * slink points to (file2)/elink2, which points to (file3)/elink, which + * points to file 4. + */ + if((gid = H5Gcreate2(fid1, "elink/file2group1/file2group2/slink/group3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + if(H5Lget_info1(fid1, "elink/file2group1/file2group2/slink/group3", &li, H5P_DEFAULT) < 0) TEST_ERROR + + /* Some simpler tests */ + if((gid = H5Gcreate2(fid1, "elink/file2group3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + if(H5Lget_info1(fid1, "elink/file2group3", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info1(fid1, "elink/elink", &li, H5P_DEFAULT) < 0) TEST_ERROR + + + /* Close file1, the only file that should still be open */ + if(H5Fclose(fid1) < 0) TEST_ERROR + + /* Re-create each file. If they are hanging open, these creates will fail */ + if((fid1 = H5Fcreate(filename1, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + if((fid2 = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + if((fid3 = H5Fcreate(filename3, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + if((fid4 = H5Fcreate(filename4, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Cleanup */ + if(H5Sclose(sid) < 0) TEST_ERROR + if(H5Tclose(tid2) < 0) TEST_ERROR + if(H5Fclose(fid4) < 0) TEST_ERROR + if(H5Fclose(fid3) < 0) TEST_ERROR + if(H5Fclose(fid2) < 0) TEST_ERROR + if(H5Fclose(fid1) < 0) TEST_ERROR + + PASSED(); + + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Gclose(gid); + H5Tclose(tid); + H5Dclose(did); + H5Sclose(sid); + H5Tclose(tid2); + H5Fclose(fid4); + H5Fclose(fid3); + H5Fclose(fid2); + H5Fclose(fid1); + } H5E_END_TRY; + return FAIL; +} /* external_link_closing_deprec() */ + +/* Callback functions for UD hard links. */ +/* UD_hard_create increments the object's reference count */ +static herr_t +UD_hard_create_deprec(const char H5_ATTR_UNUSED * link_name, hid_t loc_group, const void *udata, + size_t udata_size, hid_t H5_ATTR_UNUSED lcpl_id) +{ + haddr_t addr; + hid_t target_obj = -1; + herr_t ret_value = 0; + + if(udata_size != sizeof(haddr_t)) { + ret_value = -1; + goto done; + } /* end if */ + + addr = *((const haddr_t *)udata); + + /* Open the object this link points to */ + target_obj= H5Oopen_by_addr(loc_group, addr); + if(target_obj < 0) { + ret_value = -1; + goto done; + } /* end if */ + + /* Increment the reference count of the target object */ + if(H5Oincr_refcount(target_obj) < 0) { + ret_value = -1; + goto done; + } /* end if */ + +done: + /* Close the target object if we opened it */ + if(target_obj >= 0) { + switch(H5Iget_type(target_obj)) { + case H5I_GROUP: + if(H5Gclose(target_obj) < 0) + ret_value = -1; + break; + + case H5I_DATASET: + if(H5Dclose(target_obj) < 0) + ret_value = -1; + break; + + case H5I_DATATYPE: + if(H5Tclose(target_obj) < 0) + ret_value = -1; + break; + + case H5I_MAP: + /* TODO: Not supported in native file format yet */ + + case H5I_UNINIT: + case H5I_BADID: + case H5I_FILE: + case H5I_DATASPACE: + case H5I_ATTR: + case H5I_VFL: + case H5I_VOL: + case H5I_GENPROP_CLS: + case H5I_GENPROP_LST: + case H5I_ERROR_CLASS: + case H5I_ERROR_MSG: + case H5I_ERROR_STACK: + case H5I_SPACE_SEL_ITER: + case H5I_NTYPES: + default: + return FAIL; + } /* end switch */ + } /* end if */ + + return ret_value; +} /* end UD_hard_create() */ + +/* Traverse a hard link by opening the object */ +static hid_t +UD_hard_traverse_deprec(const char H5_ATTR_UNUSED *link_name, hid_t cur_group, + const void *udata, size_t udata_size, hid_t H5_ATTR_UNUSED lapl_id, + hid_t H5_ATTR_UNUSED dxpl_id) +{ + haddr_t addr; + hid_t ret_value = -1; + + if(udata_size != sizeof(haddr_t)) + return FAIL; + + addr = *((const haddr_t *) udata); + + ret_value = H5Oopen_by_addr(cur_group, addr); /* If this fails, our return value will be negative. */ + + return ret_value; +} /* end UD_hard_traverse() */ + +/* UD_hard_delete decrements the object's reference count */ +static herr_t +UD_hard_delete_deprec(const char H5_ATTR_UNUSED * link_name, hid_t file, const void *udata, + size_t udata_size) +{ + haddr_t addr; + hid_t target_obj = -1; + herr_t ret_value = 0; + + if(udata_size != sizeof(haddr_t)) { + ret_value = -1; + goto done; + } /* end if */ + + addr = *((const haddr_t *) udata); + + /* Open the object this link points to */ + target_obj= H5Oopen_by_addr(file, addr); + if(target_obj < 0) { + ret_value = -1; + goto done; + } /* end if */ + + /* Decrement the reference count of the target object */ + if(H5Odecr_refcount(target_obj) < 0) { + ret_value = -1; + goto done; + } /* end if */ + +done: + /* Close the target object if we opened it */ + if(target_obj >= 0) { + switch(H5Iget_type(target_obj)) { + case H5I_GROUP: + if(H5Gclose(target_obj) < 0) + ret_value = -1; + break; + + case H5I_DATASET: + if(H5Dclose(target_obj) < 0) + ret_value = -1; + break; + + case H5I_DATATYPE: + if(H5Tclose(target_obj) < 0) + ret_value = -1; + break; + + case H5I_MAP: + /* TODO: Not supported in native file format yet */ + + case H5I_UNINIT: + case H5I_BADID: + case H5I_FILE: + case H5I_DATASPACE: + case H5I_ATTR: + case H5I_VFL: + case H5I_VOL: + case H5I_GENPROP_CLS: + case H5I_GENPROP_LST: + case H5I_ERROR_CLASS: + case H5I_ERROR_MSG: + case H5I_ERROR_STACK: + case H5I_SPACE_SEL_ITER: + case H5I_NTYPES: + default: + return FAIL; + } /* end switch */ + } /* end if */ + + return ret_value; +} /* end UD_hard_delete() */ + +static int +ud_hard_links_deprec(hid_t fapl) +{ + hid_t fid = -1; /* File ID */ + hid_t gid = -1, gid2 = -1; /* Group IDs */ + H5L_info1_t li; /* Link information */ + char objname[NAME_BUF_SIZE]; /* Object name */ + h5_stat_size_t empty_size; /* Size of an empty file */ + char filename[NAME_BUF_SIZE]; + + TESTING("user-defined hard link using deprecated routines (w/new group format)") + + /* Set up filename and create file*/ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + + if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Get the size of the empty file for reference */ + if(H5Fclose(fid) < 0) TEST_ERROR + if((empty_size = h5_get_file_size(filename, fapl))<0) TEST_ERROR + + if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Check that external links are registered and UD hard links are not */ + if(H5Lis_registered(H5L_TYPE_EXTERNAL) != TRUE) TEST_ERROR + if(H5Lis_registered((H5L_type_t)UD_HARD_TYPE) != FALSE) TEST_ERROR + + /* Register "user-defined hard links" with the library */ + if(H5Lregister(UD_hard_class_deprec) < 0) TEST_ERROR + + /* Check that UD hard links are now registered */ + if(H5Lis_registered(H5L_TYPE_EXTERNAL) != TRUE) TEST_ERROR + if(H5Lis_registered((H5L_type_t)UD_HARD_TYPE) != TRUE) TEST_ERROR + + /* Create a group for the UD hard link to point to */ + if((gid = H5Gcreate2(fid, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Get address for the group to give to the hard link */ + if(H5Lget_info1(fid, "group", &li, H5P_DEFAULT) < 0) TEST_ERROR + + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Create a user-defined "hard link" to the group using the address we got + * from H5Lget_info1 */ + if(H5Lcreate_ud(fid, "ud_link", (H5L_type_t)UD_HARD_TYPE, &(li.u.address), (size_t)sizeof(haddr_t), H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + + /* Close and re-open file to ensure that data is written to disk */ + if(H5Fclose(fid) < 0) TEST_ERROR + if((fid = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) TEST_ERROR + + /* Open group through UD link */ + if((gid = H5Gopen2(fid, "ud_link", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + + /* Check name */ + if(H5Iget_name(gid, objname, (size_t)NAME_BUF_SIZE) < 0) TEST_ERROR + if(HDstrcmp(objname, "/group")) TEST_ERROR + + /* Create object in group */ + if((gid2 = H5Gcreate2(gid, "new_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Close groups*/ + if(H5Gclose(gid2) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Re-open group without using ud link to check that it was created properly */ + if((gid = H5Gopen2(fid, "group/new_group", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + + /* Check name */ + if(H5Iget_name(gid, objname, (size_t)NAME_BUF_SIZE) < 0) TEST_ERROR + if(HDstrcmp(objname, "/group/new_group")) TEST_ERROR + + /* Close opened object */ + if(H5Gclose(gid) < 0) FAIL_STACK_ERROR + + /* Check that H5Lget_objinfo works on the hard link */ + if(H5Lget_info1(fid, "ud_link", &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + /* UD hard links have no query function, thus return a "link length" of 0 */ + if(li.u.val_size != 0) TEST_ERROR + if(UD_HARD_TYPE != li.type) { + H5_FAILED(); + HDputs(" Unexpected link class - should have been a UD hard link"); + goto error; + } /* end if */ + + /* Unlink the group pointed to by the UD link. It shouldn't be + * deleted because of the UD link. */ + if(H5Ldelete(fid, "/group", H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + /* Ensure we can open the group through the UD link */ + if((gid = H5Gopen2(fid, "ud_link", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + + /* Unlink the group contained within it. */ + if(H5Ldelete(gid, "new_group", H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Gclose(gid) < 0) FAIL_STACK_ERROR + + /* Now delete the UD link. This should cause the group to be + * deleted, too. */ + if(H5Ldelete(fid, "ud_link", H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + /* Close file */ + if(H5Fclose(fid) < 0) FAIL_STACK_ERROR + + /* The file should be empty again. */ + if(empty_size != h5_get_file_size(filename, fapl)) TEST_ERROR + + if(H5Lunregister((H5L_type_t)UD_HARD_TYPE) < 0) FAIL_STACK_ERROR + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid); + } H5E_END_TRY; + return FAIL; +} /* end ud_hard_links_deprec() */ + +static int +ud_link_reregister_deprec(hid_t fapl) +{ + hid_t fid = -1; /* File ID */ + hid_t gid = -1, gid2 = -1; /* Group IDs */ + H5L_info1_t li; /* Link information */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char filename[NAME_BUF_SIZE]; + h5_stat_size_t empty_size; /* Size of an empty file */ + + TESTING("registering a new class for existing UD links using deprecated routines (w/new group format)") + + /* Set up filename and create file*/ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + + if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Get the size of the empty file for reference */ + if(H5Fclose(fid) < 0) TEST_ERROR + if((empty_size = h5_get_file_size(filename, fapl))<0) TEST_ERROR + + if((fid=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Check that UD hard links are not registered */ + if(H5Lis_registered((H5L_type_t)UD_HARD_TYPE) != FALSE) TEST_ERROR + + /* Register "user-defined hard links" with the library */ + if(H5Lregister(UD_hard_class_deprec) < 0) TEST_ERROR + + /* Check that UD hard links are registered */ + if(H5Lis_registered((H5L_type_t)UD_HARD_TYPE) != TRUE) TEST_ERROR + + /* Point a UD defined hard link to a group in the same way as the previous test */ + if((gid = H5Gcreate2(fid, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Lget_info1(fid, "group", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + + if(H5Lcreate_ud(fid, "ud_link", (H5L_type_t)UD_HARD_TYPE, &(li.u.address), + sizeof(li.u.address), H5P_DEFAULT, H5P_DEFAULT) < 0) + TEST_ERROR + + /* Create a group named REREG_TARGET_NAME in the same group as the ud link */ + if((gid = H5Gcreate2(fid, REREG_TARGET_NAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Now unregister UD hard links */ + if(H5Lunregister((H5L_type_t)UD_HARD_TYPE) < 0) TEST_ERROR + + /* Check that UD hard links are no longer registered */ + if(H5Lis_registered((H5L_type_t)UD_HARD_TYPE) != FALSE) TEST_ERROR + + /* Verify that we can't traverse the ud link anymore */ + H5E_BEGIN_TRY { + if((gid = H5Gopen2(fid, "ud_link", H5P_DEFAULT)) >= 0) TEST_ERROR + } H5E_END_TRY + + /* Verify that we can't create any new links of this type */ + H5E_BEGIN_TRY { + if(H5Lcreate_ud(fid, "ud_link2", (H5L_type_t)UD_HARD_TYPE, &(li.u.address), + sizeof(li.u.address), H5P_DEFAULT, H5P_DEFAULT) >= 0) + TEST_ERROR + } H5E_END_TRY + + /* Register a new kind of link with the same ID number */ + if(H5Lregister(UD_rereg_class) < 0) TEST_ERROR + + /* Check that UD hard links are registered again */ + if(H5Lis_registered((H5L_type_t)UD_HARD_TYPE) != TRUE) TEST_ERROR + + /* Open a group through the ud link (now a different class of link). + * It should be a different group + * than the UD hard link pointed to */ + if((gid = H5Gopen2(fid, "ud_link", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + + /* Check name */ + if(H5Iget_name(gid, objname, (size_t)NAME_BUF_SIZE) < 0) TEST_ERROR + if(HDstrcmp(objname, "/" REREG_TARGET_NAME)) TEST_ERROR + + /* Create object in group */ + if((gid2 = H5Gcreate2(gid, "new_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Close groups*/ + if(H5Gclose(gid2) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Re-open group without using ud link to check that it was created properly */ + if((gid = H5Gopen2(fid, "rereg_target/new_group", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + + /* Check name */ + if(H5Iget_name(gid, objname, (size_t)NAME_BUF_SIZE) < 0) TEST_ERROR + if(HDstrcmp(objname, "/rereg_target/new_group")) TEST_ERROR + + /* Close opened object */ + if(H5Gclose(gid) < 0) FAIL_STACK_ERROR + + /* Unlink the group pointed to by the UD hard link. It shouldn't be + * deleted because the UD link incremented its reference count. */ + if(H5Ldelete(fid, "/group", H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + /* What a mess! Re-register user-defined links to clean up the + * reference counts. We shouldn't actually need to unregister the + * other link type */ + if(H5Lregister(UD_hard_class_deprec) < 0) FAIL_STACK_ERROR + if(H5Lis_registered((H5L_type_t)UD_HARD_TYPE) != TRUE) FAIL_STACK_ERROR + + /* Ensure we can open the group through the UD link (now that UD hard + * links have been registered) */ + if((gid = H5Gopen2(fid, "ud_link", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if(H5Gclose(gid) < 0) FAIL_STACK_ERROR + + /* Delete the UD hard link. This should cause the group to be + * deleted, too. */ + if(H5Ldelete(fid, "ud_link", H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + /* Unlink the other two groups so that we can make sure the file is empty */ + if(H5Ldelete(fid, "/rereg_target/new_group", H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ldelete(fid, REREG_TARGET_NAME, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + /* Close file */ + if(H5Fclose(fid) < 0) FAIL_STACK_ERROR + + /* The file should be empty again. */ + if(empty_size != h5_get_file_size(filename, fapl)) TEST_ERROR + + if(H5Lunregister((H5L_type_t)UD_HARD_TYPE) < 0) FAIL_STACK_ERROR + if(H5Lis_registered((H5L_type_t)UD_HARD_TYPE) != FALSE) FAIL_STACK_ERROR + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid); + } H5E_END_TRY; + return FAIL; +} /* end ud_link_reregister_deprec() */ + +static int +ud_callbacks_deprec(hid_t fapl, hbool_t new_format) +{ + hid_t fid = -1; /* File ID */ + hid_t gid = -1; /* Group ID */ + hid_t lcpl = -1; /* Link Creation PL */ + H5L_info1_t li; /* Link information */ + char ud_target_name[] = UD_CB_TARGET; /* Link target name */ + char filename[NAME_BUF_SIZE]; + char query_buf[NAME_BUF_SIZE]; + + if(new_format) + TESTING("user-defined link callbacks using deprecated routines (w/new group format)") + else + TESTING("user-defined link callbacks using deprecated routines") + + /* Set up filename and create file*/ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + + if((fid=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Check that registered link classes are, and unregistered ones aren't */ + if(H5Lis_registered(H5L_TYPE_EXTERNAL) != TRUE) TEST_ERROR + if(H5Lis_registered((H5L_type_t)UD_HARD_TYPE) != FALSE) TEST_ERROR + if(H5Lis_registered((H5L_type_t)UD_CB_TYPE) != FALSE) TEST_ERROR + + /* Hit two birds with one stone: register UD hard links from previous + * test to check that having two UD links registered at once presents + * no problems. */ + if(H5Lregister(UD_hard_class_deprec) < 0) TEST_ERROR + + /* Register user-defined link class. This is the one we'll actually be using. */ + if(H5Lregister(UD_cb_class) < 0) TEST_ERROR + + /* Check that registered link classes are, and unregistered ones aren't */ + if(H5Lis_registered(H5L_TYPE_EXTERNAL) != TRUE) TEST_ERROR + if(H5Lis_registered((H5L_type_t)UD_HARD_TYPE) != TRUE) TEST_ERROR + if(H5Lis_registered((H5L_type_t)UD_CB_TYPE) != TRUE) TEST_ERROR + + /* Create a group for the UD link to point to */ + if((gid = H5Gcreate2(fid, UD_CB_TARGET, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Create a user-defined link to the group. These UD links behave like soft links. */ + if(H5Lcreate_ud(fid, UD_CB_LINK_NAME, (H5L_type_t)UD_CB_TYPE, ud_target_name, (size_t)UD_CB_TARGET_LEN, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Try opening group through UD link */ + if((gid = H5Gopen2(fid, UD_CB_LINK_NAME, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Query the link to test its query callback */ + if(H5Lget_info1(fid, UD_CB_LINK_NAME, &li, H5P_DEFAULT) < 0) TEST_ERROR + if(li.u.val_size != 16) TEST_ERROR + if (UD_CB_TYPE != li.type) { + H5_FAILED(); + HDputs(" Unexpected link class - should have been a UD hard link"); + goto error; + } + + /* Fill the query buffer */ + if(H5Lget_val(fid, UD_CB_LINK_NAME, query_buf, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(HDstrcmp(query_buf, "query succeeded") != 0) TEST_ERROR + + /* Move the link */ + if(H5Lmove(fid, UD_CB_LINK_NAME, H5L_SAME_LOC, NEW_UD_CB_LINK_NAME, H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + /* Re-open group to ensure that move worked */ + if((gid = H5Gopen2(fid, NEW_UD_CB_LINK_NAME, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if(H5Gclose(gid) < 0) FAIL_STACK_ERROR + + /* Remove UD link */ + if(H5Ldelete(fid, NEW_UD_CB_LINK_NAME, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + /* Test that the callbacks don't work if the link class is not registered */ + + /* Create a new link. Just for fun, give it a non-default character + * encoding (to test that LAPLs work) */ + if((lcpl = H5Pcreate(H5P_LINK_CREATE)) < 0) FAIL_STACK_ERROR + if(H5Pset_char_encoding(lcpl, H5T_CSET_UTF8) < 0) FAIL_STACK_ERROR + if(H5Lcreate_ud(fid, UD_CB_LINK_NAME, (H5L_type_t)UD_CB_TYPE, ud_target_name, (size_t)UD_CB_TARGET_LEN, lcpl, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Pclose(lcpl) < 0) FAIL_STACK_ERROR + + /* Check its character encoding */ + if(H5Lget_info1(fid, UD_CB_LINK_NAME, &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(li.cset != H5T_CSET_UTF8) TEST_ERROR + + /* Unregister the link class so the library forgets what its callbacks do */ + if(H5Lunregister((H5L_type_t)UD_CB_TYPE) < 0) FAIL_STACK_ERROR + + /* Now test that each of the callbacks fails */ + H5E_BEGIN_TRY { + if(H5Lcreate_ud(fid, NEW_UD_CB_LINK_NAME, (H5L_type_t)UD_CB_TYPE, ud_target_name, (size_t)UD_CB_TARGET_LEN, H5P_DEFAULT, H5P_DEFAULT) >= 0) FAIL_STACK_ERROR + if(H5Lmove(fid, UD_CB_LINK_NAME, H5L_SAME_LOC, NEW_UD_CB_LINK_NAME, H5P_DEFAULT, H5P_DEFAULT) >= 0) FAIL_STACK_ERROR + if(H5Ldelete(fid, UD_CB_LINK_NAME, H5P_DEFAULT) >= 0) FAIL_STACK_ERROR + if((gid = H5Gopen2(gid, UD_CB_LINK_NAME, H5P_DEFAULT)) >= 0) FAIL_STACK_ERROR + if(H5Ldelete(fid, UD_CB_LINK_NAME, H5P_DEFAULT) >= 0) FAIL_STACK_ERROR + } H5E_END_TRY + + /* The query callback should NOT fail, but should be unable to give a linklen */ + if(H5Lget_info1(fid, UD_CB_LINK_NAME, &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(li.u.val_size != 0) TEST_ERROR + if(li.type != UD_CB_TYPE) TEST_ERROR + + /* Unregister the UD hard links */ + if(H5Lunregister((H5L_type_t)UD_HARD_TYPE) < 0) FAIL_STACK_ERROR + + /* Close file */ + if(H5Fclose(fid) < 0) FAIL_STACK_ERROR + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Pclose (lcpl); + H5Gclose (gid); + H5Fclose (fid); + } H5E_END_TRY; + return FAIL; +} /* end ud_callbacks_deprec() */ + +/*------------------------------------------------------------------------- + * Function: lapl_nlinks_deprec + * + * Purpose: Check that the maximum number of soft links can be adjusted + * by the user using the Link Access Property List. + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +lapl_nlinks_deprec(hid_t fapl, hbool_t new_format) +{ + hid_t fid = -1; /* File ID */ + hid_t gid = -1, gid2 = -1; /* Group IDs */ + hid_t plist = -1; /* lapl ID */ + hid_t tid = -1, sid = -1, did = -1; /* Other IDs */ + hid_t gapl = -1, dapl = -1, tapl = -1; /* Other property lists */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char filename[NAME_BUF_SIZE]; + size_t nlinks; /* nlinks for H5Pset_nlinks */ + hsize_t dims[2]; + + if(new_format) + TESTING("adjusting nlinks with LAPL using deprecated routines (w/new group format)") + else + TESTING("adjusting nlinks with LAPL using deprecated routines") + + /* Make certain test is valid */ + /* XXX: should probably make a "generic" test that creates the proper + * # of links based on this value - QAK + */ + HDassert(H5L_NUM_LINKS == 16); + + /* Create file */ + h5_fixname(FILENAME[1], fapl, filename, sizeof filename); + if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create group with short name in file (used as target for links) */ + if((gid = H5Gcreate2(fid, "final", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Create chain of soft links to existing object (limited) */ + if(H5Lcreate_soft("final", fid, "soft1", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft1", fid, "soft2", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft2", fid, "soft3", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft3", fid, "soft4", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft4", fid, "soft5", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft5", fid, "soft6", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft6", fid, "soft7", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft7", fid, "soft8", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft8", fid, "soft9", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft9", fid, "soft10", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft10", fid, "soft11", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft11", fid, "soft12", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft12", fid, "soft13", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft13", fid, "soft14", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft14", fid, "soft15", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft15", fid, "soft16", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("soft16", fid, "soft17", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + /* Close objects */ + if(H5Gclose(gid) < 0) TEST_ERROR + if(H5Fclose(fid) < 0) TEST_ERROR + + /* Open file */ + if((fid = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) TEST_ERROR + + /* Create LAPL with higher-than-usual nlinks value */ + /* Create a non-default lapl with udata set to point to the first group */ + if((plist = H5Pcreate(H5P_LINK_ACCESS)) < 0) TEST_ERROR + nlinks = 20; + if(H5Pset_nlinks(plist, nlinks) < 0) TEST_ERROR + + /* Ensure that nlinks was set successfully */ + nlinks = 0; + if(H5Pget_nlinks(plist, &nlinks) < 0) TEST_ERROR + if(nlinks != 20) TEST_ERROR + + /* Open object through what is normally too many soft links using + * new property list */ + if((gid = H5Oopen(fid, "soft17", plist)) < 0) TEST_ERROR + + /* Check name */ + if(H5Iget_name(gid, objname, (size_t)NAME_BUF_SIZE) < 0) TEST_ERROR + if(HDstrcmp(objname, "/soft17")) TEST_ERROR + + /* Create group using soft link */ + if((gid2 = H5Gcreate2(gid, "new_soft", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Close groups */ + if(H5Gclose(gid2) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Set nlinks to a smaller number */ + nlinks = 4; + if(H5Pset_nlinks(plist, nlinks) < 0) TEST_ERROR + + /* Ensure that nlinks was set successfully */ + nlinks = 0; + if(H5Pget_nlinks(plist, &nlinks) < 0) TEST_ERROR + if(nlinks != 4) TEST_ERROR + + /* Try opening through what is now too many soft links */ + H5E_BEGIN_TRY { + gid = H5Oopen(fid, "soft5", plist); + } H5E_END_TRY; + if (gid >= 0) { + H5_FAILED(); + HDputs(" Should have failed for sequence of too many nested links."); + goto error; + } + + /* Open object through lesser soft link */ + if((gid = H5Oopen(fid, "soft4", plist)) < 0) TEST_ERROR + + /* Check name */ + if(H5Iget_name(gid, objname, (size_t)NAME_BUF_SIZE) < 0) TEST_ERROR + if(HDstrcmp(objname, "/soft4")) TEST_ERROR + + /* Test other functions that should use a LAPL */ + nlinks = 20; + if(H5Pset_nlinks(plist, nlinks) < 0) TEST_ERROR + + /* Try copying and moving when both src and dst contain many soft links + * using a non-default LAPL + */ + if(H5Lcopy(fid, "soft17", fid, "soft17/newer_soft", H5P_DEFAULT, plist) < 0) TEST_ERROR + if(H5Lmove(fid, "soft17/newer_soft", fid, "soft17/newest_soft", H5P_DEFAULT, plist) < 0) TEST_ERROR + + /* H5Olink */ + if(H5Olink(gid, fid, "soft17/link_to_group", H5P_DEFAULT, plist) < 0) TEST_ERROR + + /* H5Lcreate_hard and H5Lcreate_soft */ + if(H5Lcreate_hard(fid, "soft17", fid, "soft17/link2_to_group", H5P_DEFAULT, plist) < 0) TEST_ERROR + if(H5Lcreate_soft("/soft4", fid, "soft17/soft_link", H5P_DEFAULT, plist) < 0) TEST_ERROR + + /* H5Ldelete */ + if(H5Ldelete(fid, "soft17/soft_link", plist) < 0) TEST_ERROR + + /* H5Lget_val and H5Lget_info1 */ + if(H5Lget_val(fid, "soft17", NULL, (size_t)0, plist) < 0) TEST_ERROR + if(H5Lget_info1(fid, "soft17", NULL, plist) < 0) TEST_ERROR + + /* H5Lcreate_external and H5Lcreate_ud */ + if(H5Lcreate_external("filename", "path", fid, "soft17/extlink", H5P_DEFAULT, plist) < 0) TEST_ERROR + if(H5Lregister(UD_rereg_class) < 0) TEST_ERROR + if(H5Lcreate_ud(fid, "soft17/udlink", (H5L_type_t)UD_HARD_TYPE, NULL, (size_t)0, H5P_DEFAULT, plist) < 0) TEST_ERROR + + /* Close plist */ + if(H5Pclose(plist) < 0) TEST_ERROR + + /* Create a datatype and dataset as targets inside the group */ + if((tid = H5Tcopy(H5T_NATIVE_INT)) < 0) TEST_ERROR + if(H5Tcommit2(gid, "datatype", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Tclose(tid) < 0) TEST_ERROR + + dims[0] = 2; + dims[1] = 2; + if((sid = H5Screate_simple(2, dims, NULL)) < 0) TEST_ERROR + if((did = H5Dcreate2(gid, "dataset", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl_g, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Dclose(did) < 0) TEST_ERROR + + /* Close group */ + if(H5Gclose(gid) < 0) TEST_ERROR + + /* Try to open the objects using too many symlinks with default *APLs */ + H5E_BEGIN_TRY { + if((gid = H5Gopen2(fid, "soft17", H5P_DEFAULT)) >= 0) + FAIL_PUTS_ERROR(" Should have failed for too many nested links.") + if((tid = H5Topen2(fid, "soft17/datatype", H5P_DEFAULT)) >= 0) + FAIL_PUTS_ERROR(" Should have failed for too many nested links.") + if((did = H5Dopen2(fid, "soft17/dataset", H5P_DEFAULT)) >= 0) + FAIL_PUTS_ERROR(" Should have failed for too many nested links.") + } H5E_END_TRY + + /* Create property lists with nlinks set */ + if((gapl = H5Pcreate(H5P_GROUP_ACCESS)) < 0) TEST_ERROR + if((tapl = H5Pcreate(H5P_DATATYPE_ACCESS)) < 0) TEST_ERROR + if((dapl = H5Pcreate(H5P_DATASET_ACCESS)) < 0) TEST_ERROR + + nlinks = 20; + if(H5Pset_nlinks(gapl, nlinks) < 0) TEST_ERROR + if(H5Pset_nlinks(tapl, nlinks) < 0) TEST_ERROR + if(H5Pset_nlinks(dapl, nlinks) < 0) TEST_ERROR + + /* We should now be able to use these property lists to open each kind + * of object. + */ + if((gid = H5Gopen2(fid, "soft17", gapl)) < 0) FAIL_STACK_ERROR + if((tid = H5Topen2(fid, "soft17/datatype", tapl)) < 0) TEST_ERROR + if((did = H5Dopen2(fid, "soft17/dataset", dapl)) < 0) TEST_ERROR + + /* Close objects */ + if(H5Gclose(gid) < 0) TEST_ERROR + if(H5Tclose(tid) < 0) TEST_ERROR + if(H5Dclose(did) < 0) TEST_ERROR + + /* Close plists */ + if(H5Pclose(gapl) < 0) TEST_ERROR + if(H5Pclose(tapl) < 0) TEST_ERROR + if(H5Pclose(dapl) < 0) TEST_ERROR + + /* Unregister UD hard link class */ + if(H5Lunregister((H5L_type_t)UD_HARD_TYPE) < 0) TEST_ERROR + + /* Close file */ + if(H5Fclose(fid) < 0) TEST_ERROR + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Pclose(gapl); + H5Pclose(dapl); + H5Pclose(tapl); + H5Dclose(did); + H5Sclose(sid); + H5Tclose(tid); + H5Gclose(gid2); + H5Gclose(gid); + H5Pclose(plist); + H5Fclose(fid); + } H5E_END_TRY; + return FAIL; +} /* end lapl_nlinks_deprec() */ + +/*------------------------------------------------------------------------- + * Function: linkinfo_deprec + * + * Purpose: Check that the link class is returned correctly when queried. + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +linkinfo_deprec(hid_t fapl, hbool_t new_format) +{ + hid_t fid = -1; /* File ID */ + hid_t gid = -1; /* Group ID */ + hid_t tid = -1; /* Type ID */ + hid_t sid = -1, did = -1; /* Dataspace and dataset IDs */ + H5L_info1_t li; /* Link information */ + char filename[NAME_BUF_SIZE]; + + if(new_format) + TESTING("link type field in H5Lget_info using deprecated routines (w/new group format)") + else + TESTING("link type field in H5Lget_info using deprecated routines") + + /* Set up filename and create file*/ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + + if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Register a couple of user-defined link classes with the library */ + if(H5Lregister(UD_plist_class) < 0) TEST_ERROR + + /* Create an object of each type */ + if((tid = H5Tcopy(H5T_NATIVE_INT)) < 0) TEST_ERROR + if(H5Tcommit2(fid, "datatype", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if((gid = H5Gcreate2(fid, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if(H5Lcreate_soft("group", fid, "softlink", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + if((sid = H5Screate(H5S_SCALAR)) < 0) TEST_ERROR + if((did = H5Dcreate2(fid, "dataset", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl_g, H5P_DEFAULT)) < 0) TEST_ERROR + + if(H5Lcreate_ud(fid, "ud_link", (H5L_type_t)UD_PLIST_TYPE, NULL, (size_t)0, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lcreate_external("file_name", "obj_path", fid, "ext_link", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + + /* Close all objects */ + if(H5Tclose(tid) < 0) TEST_ERROR + if(H5Gclose(gid) < 0) TEST_ERROR + if(H5Dclose(did) < 0) TEST_ERROR + + /* Make sure that link type is correct when objects are queried */ + if(H5Lget_info1(fid, "datatype", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(li.type != H5L_TYPE_HARD) TEST_ERROR + if(H5Lget_info1(fid, "group", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(li.type != H5L_TYPE_HARD) TEST_ERROR + if(H5Lget_info1(fid, "dataset", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(li.type != H5L_TYPE_HARD) TEST_ERROR + + if(H5Lget_info1(fid, "ext_link", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(li.type != H5L_TYPE_EXTERNAL) TEST_ERROR + if(H5Lget_info1(fid, "softlink", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(li.type != H5L_TYPE_SOFT) TEST_ERROR + if(H5Lget_info1(fid, "ud_link", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(li.type != UD_PLIST_TYPE) TEST_ERROR + + /* Ensure that passing a NULL pointer doesn't cause an error */ + if(H5Lget_info1(fid, "group", NULL, H5P_DEFAULT) < 0) TEST_ERROR + + if(H5Fclose(fid) < 0) TEST_ERROR + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Tclose (tid); + H5Dclose (did); + H5Gclose (gid); + H5Fclose (fid); + } H5E_END_TRY; + return FAIL; +} /* end linkinfo_deprec() */ + +/*------------------------------------------------------------------------- + * Function: corder_create_compact_deprec + * + * Purpose: Create a group with creation order indices and insert links + * in it when in compact form + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +corder_create_compact_deprec(hid_t fapl) +{ + hid_t file_id = -1; /* File ID */ + hid_t group_id = -1, group_id2 = -1; /* Group IDs */ + hid_t gcpl_id = -1; /* Group creation property list ID */ + unsigned max_compact; /* Maximum # of links to store in group compactly */ + unsigned min_dense; /* Minimum # of links to store in group "densely" */ + unsigned nlinks; /* Number of link messages in group's header */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char filename[NAME_BUF_SIZE];/* File name */ + unsigned u; /* Local index variable */ + + TESTING("creating compact group with creation order indexing using deprecated routines") + + /* Create file */ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create group creation property list */ + if((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) TEST_ERROR + + /* Set creation order tracking & indexing on group */ + if(H5Pset_link_creation_order(gcpl_id, (H5P_CRT_ORDER_TRACKED | H5P_CRT_ORDER_INDEXED)) < 0) TEST_ERROR + + /* Create group with creation order indexing & tracking on */ + if((group_id = H5Gcreate2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT, gcpl_id, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Check on group's initial status */ + if(H5G__is_empty_test(group_id) != TRUE) TEST_ERROR + if(H5G__has_stab_test(group_id) == TRUE) TEST_ERROR + if(H5G__is_new_dense_test(group_id) == TRUE) TEST_ERROR + + /* Query the group creation properties */ + if(H5Pget_link_phase_change(gcpl_id, &max_compact, &min_dense) < 0) TEST_ERROR + + /* Create several links, but keep group in compact form */ + for(u = 0; u < max_compact; u++) { + HDsnprintf(objname, sizeof(objname), "filler %u", u); + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + + /* Verify state of group */ + if(H5G__has_links_test(group_id, &nlinks) != TRUE) TEST_ERROR + if(nlinks != (u + 1)) TEST_ERROR + if(H5G__has_stab_test(group_id) == TRUE) TEST_ERROR + if(H5G__is_new_dense_test(group_id) == TRUE) TEST_ERROR + } /* end for */ + + /* Close the group */ + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Close the group creation property list */ + if(H5Pclose(gcpl_id) < 0) TEST_ERROR + + /* Close the file */ + if(H5Fclose(file_id) < 0) TEST_ERROR + + /* Re-open the file */ + if((file_id = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR + + /* Open group created */ + if((group_id = H5Gopen2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + + /* Verify state of group */ + if(H5G__has_links_test(group_id, &nlinks) != TRUE) TEST_ERROR + if(nlinks != max_compact) TEST_ERROR + if(H5G__has_stab_test(group_id) == TRUE) TEST_ERROR + if(H5G__is_new_dense_test(group_id) == TRUE) TEST_ERROR + + /* Loop through links, checking their creation order values */ + /* (the name index is used, but the creation order value is in the same order) */ + for(u = 0; u < max_compact; u++) { + H5L_info1_t linfo; /* Link information */ + + /* Retrieve information for link */ + HDsnprintf(objname, sizeof(objname), "filler %u", u); + if(H5Lget_info1(group_id, objname, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify creation order of link */ + if(linfo.corder_valid != TRUE) TEST_ERROR + if(linfo.corder != u) TEST_ERROR + } /* end for */ + + /* Close the group */ + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Close the file */ + if(H5Fclose(file_id) < 0) TEST_ERROR + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Pclose(gcpl_id); + H5Gclose(group_id); + H5Fclose(file_id); + } H5E_END_TRY; + return FAIL; +} /* end corder_create_compact_deprec() */ + +/*------------------------------------------------------------------------- + * Function: corder_create_dense_deprec + * + * Purpose: Create a group with creation order indices and insert links + * in it until it's in dense form + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +corder_create_dense_deprec(hid_t fapl) +{ + hid_t file_id = -1; /* File ID */ + hid_t group_id = -1, group_id2 = -1; /* Group IDs */ + hid_t gcpl_id = -1; /* Group creation property list ID */ + unsigned max_compact; /* Maximum # of links to store in group compactly */ + unsigned min_dense; /* Minimum # of links to store in group "densely" */ + unsigned nlinks; /* Number of link messages in group's header */ + hsize_t name_count; /* # of records in name index */ + hsize_t corder_count; /* # of records in creation order index */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char filename[NAME_BUF_SIZE];/* File name */ + unsigned u; /* Local index variable */ + + TESTING("creating dense group with creation order indexing using deprecated routines") + + /* Create file */ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create group creation property list */ + if((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) TEST_ERROR + + /* Set creation order tracking & indexing on group */ + if(H5Pset_link_creation_order(gcpl_id, (H5P_CRT_ORDER_TRACKED | H5P_CRT_ORDER_INDEXED)) < 0) TEST_ERROR + + /* Create group with creation order indexing & tracking on */ + if((group_id = H5Gcreate2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT, gcpl_id, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Check on group's initial status */ + if(H5G__is_empty_test(group_id) != TRUE) TEST_ERROR + if(H5G__has_stab_test(group_id) == TRUE) TEST_ERROR + if(H5G__is_new_dense_test(group_id) == TRUE) TEST_ERROR + + /* Query the group creation properties */ + if(H5Pget_link_phase_change(gcpl_id, &max_compact, &min_dense) < 0) TEST_ERROR + + /* Create several links, up to limit of compact form */ + for(u = 0; u < max_compact; u++) { + HDsnprintf(objname, sizeof(objname), "filler %u", u); + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + + /* Verify state of group */ + if(H5G__has_links_test(group_id, &nlinks) != TRUE) TEST_ERROR + if(nlinks != (u + 1)) TEST_ERROR + if(H5G__has_stab_test(group_id) == TRUE) TEST_ERROR + if(H5G__is_new_dense_test(group_id) == TRUE) TEST_ERROR + } /* end for */ + + /* Create another link, to push group into dense form */ + HDsnprintf(objname, sizeof(objname), "filler %u", max_compact); + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + + /* Verify state of group */ + if(H5G__has_links_test(group_id, NULL) == TRUE) TEST_ERROR + if(H5G__has_stab_test(group_id) == TRUE) TEST_ERROR + if(H5G__is_new_dense_test(group_id) != TRUE) TEST_ERROR + + /* Retrieve & verify # of records in the name & creation order indices */ + if(H5G__new_dense_info_test(group_id, &name_count, &corder_count) < 0) TEST_ERROR + if(name_count != corder_count) TEST_ERROR + + /* Close the group */ + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Close the group creation property list */ + if(H5Pclose(gcpl_id) < 0) TEST_ERROR + + /* Close the file */ + if(H5Fclose(file_id) < 0) TEST_ERROR + + /* Re-open the file */ + if((file_id = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR + + /* Open group created */ + if((group_id = H5Gopen2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + + /* Verify state of group */ + if(H5G__has_links_test(group_id, NULL) == TRUE) TEST_ERROR + if(H5G__has_stab_test(group_id) == TRUE) TEST_ERROR + if(H5G__is_new_dense_test(group_id) != TRUE) TEST_ERROR + + /* Loop through links, checking their creation order values */ + /* (the name index is used, but the creation order value is in the same order) */ + for(u = 0; u < (max_compact + 1); u++) { + H5L_info1_t linfo; /* Link information */ + + /* Retrieve information for link */ + HDsnprintf(objname, sizeof(objname), "filler %u", u); + if(H5Lget_info1(group_id, objname, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify creation order of link */ + if(linfo.corder_valid != TRUE) TEST_ERROR + if(linfo.corder != u) TEST_ERROR + } /* end for */ + + /* Close the group */ + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Close the file */ + if(H5Fclose(file_id) < 0) TEST_ERROR + + PASSED(); + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Pclose(gcpl_id); + H5Gclose(group_id); + H5Fclose(file_id); + } H5E_END_TRY; + return FAIL; +} /* end corder_create_dense_deprec() */ + +/*------------------------------------------------------------------------- + * Function: link_info_by_idx_check_deprec + * + * Purpose: Support routine for link_info_by_idx, to verify the link + * info is correct for a link + * + * Note: This routine assumes that the links have been inserted in the + * group in alphabetical order. + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +link_info_by_idx_check_deprec(hid_t group_id, const char *linkname, hsize_t n, + hbool_t hard_link, hbool_t use_index) +{ + char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ + char valname[NAME_BUF_SIZE]; /* Link value name */ + char tmpval[NAME_BUF_SIZE]; /* Temporary link value */ + H5L_info1_t linfo; /* Link info struct */ + + /* Make link value for increasing/native order queries */ + HDsnprintf(valname, sizeof(valname), "value %02u", (unsigned)n); + + /* Verify the link information for first link, in increasing creation order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder != 0) TEST_ERROR + + /* Verify the link information for new link, in increasing creation order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder != (int64_t)n) TEST_ERROR + + /* Verify value for new soft link, in increasing creation order */ + if(!hard_link) { + HDmemset(tmpval, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, n, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(valname, tmpval)) TEST_ERROR + } /* end if */ + + /* Verify the name for new link, in increasing creation order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, n, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(linkname, tmpname)) TEST_ERROR + + /* Don't test "native" order if there is no creation order index, since + * there's not a good way to easily predict the link's order in the name + * index. + */ + if(use_index) { + /* Verify the link information for first link, in native creation order (which is increasing) */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_NATIVE, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder != 0) TEST_ERROR + + /* Verify the link information for new link, in native creation order (which is increasing) */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_NATIVE, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder != (int64_t)n) TEST_ERROR + + /* Verify value for new soft link, in native creation order (which is increasing) */ + if(!hard_link) { + HDmemset(tmpval, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_NATIVE, n, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(valname, tmpval)) TEST_ERROR + } /* end if */ + + /* Verify the name for new link, in native creation order (which is increasing) */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_NATIVE, n, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(linkname, tmpname)) TEST_ERROR + } /* end if */ + + /* Verify the link information for first link, in decreasing creation order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder != 0) TEST_ERROR + + /* Verify the link information for new link, in decreasing creation order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder != (int64_t)n) TEST_ERROR + + /* Verify value for new soft link, in decreasing creation order */ + if(!hard_link) { + HDmemset(tmpval, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)0, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(valname, tmpval)) TEST_ERROR + } /* end if */ + + /* Verify the name for new link, in decreasing creation order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)0, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(linkname, tmpname)) TEST_ERROR + + + /* Verify the link information for first link, in increasing link name order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder != 0) TEST_ERROR + + /* Verify the link information for new link, in increasing link name order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder != (int64_t)n) TEST_ERROR + + /* Verify value for new soft link, in increasing link name order */ + if(!hard_link) { + HDmemset(tmpval, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, n, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(valname, tmpval)) TEST_ERROR + } /* end if */ + + /* Verify the name for new link, in increasing link name order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, n, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(linkname, tmpname)) TEST_ERROR + + /* Don't test "native" order queries on link name order, since there's not + * a good way to easily predict the order of the links in the name index. + */ + + /* Verify the link information for first link, in decreasing link name order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder != 0) TEST_ERROR + + /* Verify the link information for new link, in decreasing link name order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(linfo.corder != (int64_t)n) TEST_ERROR + + /* Verify value for new soft link, in decreasing link name order */ + if(!hard_link) { + HDmemset(tmpval, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)0, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(valname, tmpval)) TEST_ERROR + } /* end if */ + + /* Verify the name for new link, in decreasing link name order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)0, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(linkname, tmpname)) TEST_ERROR + + /* Success */ + return(0); + +error: + /* Failure */ + return(-1); +} /* end link_info_by_idx_check_deprec() */ + +/*------------------------------------------------------------------------- + * Function: link_info_by_idx_deprec + * + * Purpose: Create a group with creation order indices and test querying + * info by index. + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +link_info_by_idx_deprec(hid_t fapl) +{ + hid_t file_id = -1; /* File ID */ + hid_t group_id = -1; /* Group ID */ + hid_t gcpl_id = -1; /* Group creation property list ID */ + unsigned hard_link; /* Create hard or soft link? */ + unsigned use_index; /* Use index on creation order values */ + unsigned max_compact; /* Maximum # of links to store in group compactly */ + unsigned min_dense; /* Minimum # of links to store in group "densely" */ + H5L_info1_t linfo; /* Link info struct */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char valname[NAME_BUF_SIZE]; /* Link value name */ + char filename[NAME_BUF_SIZE];/* File name */ + char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ + unsigned u; /* Local index variable */ + ssize_t name_len; /* Length of name */ + herr_t ret; /* Generic return value */ + + /* Loop over creating hard or soft links */ + for(hard_link = FALSE; hard_link <= TRUE; hard_link++) { + /* Loop over using index for creation order value */ + for(use_index = FALSE; use_index <= TRUE; use_index++) { + if(hard_link) { + if(use_index) + TESTING("querying info by index w/creation order index, using hard links and deprecated routines") + else + TESTING("querying info by index w/o creation order index, using hard links and deprecated routines") + } /* end if */ + else { + if(use_index) + TESTING("querying info by index w/creation order index, using soft links and deprecated routines") + else + TESTING("querying info by index w/o creation order index, using soft links and deprecated routines") + } /* end else */ + + /* Create file */ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create group creation property list */ + if((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) TEST_ERROR + + /* Set creation order tracking & indexing on group */ + if(H5Pset_link_creation_order(gcpl_id, (H5P_CRT_ORDER_TRACKED | (use_index ? H5P_CRT_ORDER_INDEXED : (unsigned)0))) < 0) TEST_ERROR + + /* Create group with creation order indexing & tracking on */ + if((group_id = H5Gcreate2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT, gcpl_id, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Query the group creation properties */ + if(H5Pget_link_phase_change(gcpl_id, &max_compact, &min_dense) < 0) TEST_ERROR + + /* Check for query on empty group */ + H5E_BEGIN_TRY { + ret = H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, &linfo, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + H5E_BEGIN_TRY { + name_len = H5Lget_name_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT); + } H5E_END_TRY; + if(name_len >= 0) TEST_ERROR + + /* Create several links, up to limit of compact form */ + for(u = 0; u < max_compact; u++) { + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Check for creating hard or soft link */ + if(hard_link) { + hid_t group_id2; /* Group ID */ + + /* Create hard link, with group object */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + } /* end if */ + else { + /* Make value for link */ + HDsnprintf(valname, sizeof(valname), "value %02u", u); + + /* Create soft link */ + if(H5Lcreate_soft(valname, group_id, objname, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + } /* end else */ + + /* Verify link information for new link */ + if(link_info_by_idx_check_deprec(group_id, objname, (hsize_t)u, hard_link, use_index) < 0) TEST_ERROR + } /* end for */ + + /* Verify state of group */ + if(H5G__has_links_test(group_id, NULL) != TRUE) TEST_ERROR + + /* Check for out of bound offset queries */ + H5E_BEGIN_TRY { + ret = H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + H5E_BEGIN_TRY { + ret = H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)u, &linfo, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + H5E_BEGIN_TRY { + name_len = H5Lget_name_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT); + } H5E_END_TRY; + if(name_len >= 0) TEST_ERROR + + /* Create more links, to push group into dense form */ + for(; u < (max_compact * 2); u++) { + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Check for creating hard or soft link */ + if(hard_link) { + hid_t group_id2; /* Group ID */ + + /* Create hard link, with group object */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + } /* end if */ + else { + /* Make value for link */ + HDsnprintf(valname, sizeof(valname), "value %02u", u); + + /* Create soft link */ + if(H5Lcreate_soft(valname, group_id, objname, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + } /* end else */ + + /* Verify state of group */ + if(H5G__is_new_dense_test(group_id) != TRUE) TEST_ERROR + + /* Verify link information for new link */ + if(link_info_by_idx_check_deprec(group_id, objname, (hsize_t)u, hard_link, use_index) < 0) TEST_ERROR + } /* end for */ + + /* Check for out of bound offset queries */ + H5E_BEGIN_TRY { + ret = H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + H5E_BEGIN_TRY { + ret = H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)u, &linfo, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + H5E_BEGIN_TRY { + name_len = H5Lget_name_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT); + } H5E_END_TRY; + if(name_len >= 0) TEST_ERROR + + /* Close the group */ + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Close the group creation property list */ + if(H5Pclose(gcpl_id) < 0) TEST_ERROR + + /* Close the file */ + if(H5Fclose(file_id) < 0) TEST_ERROR + + PASSED(); + } /* end for */ + } /* end for */ + + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Pclose(gcpl_id); + H5Gclose(group_id); + H5Fclose(file_id); + } H5E_END_TRY; + return FAIL; +} /* end link_info_by_idx_deprec() */ + +/*------------------------------------------------------------------------- + * Function: link_info_by_idx_old_deprec + * + * Purpose: Create a old-format group and test querying + * info by index. + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +link_info_by_idx_old_deprec(hid_t fapl) +{ + hid_t file_id = -1; /* File ID */ + hid_t group_id = -1, group_id2 = -1; /* Group IDs */ + unsigned hard_link; /* Create hard or soft link? */ + H5L_info1_t linfo; /* Link info struct */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char valname[NAME_BUF_SIZE]; /* Link value name */ + char filename[NAME_BUF_SIZE];/* File name */ + haddr_t objno[CORDER_NLINKS]; /* Addresses of the objects created */ + char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ + char tmpval[NAME_BUF_SIZE]; /* Temporary link value */ + unsigned u; /* Local index variable */ + ssize_t name_len; /* Length of name */ + herr_t ret; /* Generic return value */ + + /* Loop over creating hard or soft links */ + for(hard_link = FALSE; hard_link <= TRUE; hard_link++) { + if(hard_link) + TESTING("querying info by index in old-style group, using hard links and deprecated routines") + else + TESTING("querying info by index in old-style group, using soft links and deprecated routines") + + /* Create file */ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create group to operate on */ + if((group_id = H5Gcreate2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Create several links */ + for(u = 0; u < CORDER_NLINKS; u++) { + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Check for creating hard or soft link */ + if(hard_link) { + H5O_info1_t oi; /* Buffer for querying object's info */ + + /* Create group */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Retrieve group's address on disk */ + if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + objno[u] = oi.addr; + + /* Close group */ + if(H5Gclose(group_id2) < 0) TEST_ERROR + } /* end if */ + else { + /* Make value for link */ + HDsnprintf(valname, sizeof(valname), "value %02u", u); + + /* Create soft link */ + if(H5Lcreate_soft(valname, group_id, objname, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + } /* end else */ + } /* end for */ + + /* Verify link information for created links */ + for(u = 0; u < CORDER_NLINKS; u++) { + unsigned dec_u = CORDER_NLINKS - (u + 1); /* Decreasing mapped index */ + + /* Make link name for increasing/native order queries */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Make link value for increasing/native order queries */ + HDsnprintf(valname, sizeof(valname), "value %02u", u); + + /* Verify link information (in increasing order) */ + if(hard_link) { + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5F_addr_ne(linfo.u.address, objno[u])) TEST_ERROR + } /* end if */ + else { + if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)u, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(valname, tmpval)) TEST_ERROR + } /* end else */ + + /* Verify link name (in increasing order) */ + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)u, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(objname, tmpname)) TEST_ERROR + + + /* Verify link information (in native order - native is increasing) */ + if(hard_link) { + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_NAME, H5_ITER_NATIVE, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5F_addr_ne(linfo.u.address, objno[u])) TEST_ERROR + } /* end if */ + else { + if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_NATIVE, (hsize_t)u, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(valname, tmpval)) TEST_ERROR + } /* end else */ + + /* Verify link name (in native order - native is increasing) */ + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_NATIVE, (hsize_t)u, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(objname, tmpname)) TEST_ERROR + + + /* Make link name for decreasing order queries */ + HDsnprintf(objname, sizeof(objname), "filler %02u", dec_u); + + /* Make link value for decreasing order queries */ + HDsnprintf(valname, sizeof(valname), "value %02u", dec_u); + + /* Verify link information (in decreasing order) */ + if(hard_link) { + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5F_addr_ne(linfo.u.address, objno[dec_u])) TEST_ERROR + } /* end if */ + else { + if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)u, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(valname, tmpval)) TEST_ERROR + } /* end else */ + + /* Verify link name (in decreasing order) */ + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)u, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(HDstrcmp(objname, tmpname)) TEST_ERROR + } /* end for */ + + /* Check for creation order index queries */ + H5E_BEGIN_TRY { + ret = H5Lget_info_by_idx1(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + H5E_BEGIN_TRY { + name_len = H5Lget_name_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT); + } H5E_END_TRY; + if(name_len >= 0) TEST_ERROR + + /* Verify state of group */ + if(H5G__has_stab_test(group_id) != TRUE) TEST_ERROR + + /* Close the group */ + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Close the file */ + if(H5Fclose(file_id) < 0) TEST_ERROR + + PASSED(); + } /* end for */ + + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Gclose(group_id); + H5Fclose(file_id); + } H5E_END_TRY; + return FAIL; +} /* end link_info_by_idx_old_deprec() */ + +/*------------------------------------------------------------------------- + * Function: delete_by_idx_deprec + * + * Purpose: Create a group with creation order indices and test deleting + * links by index. + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +delete_by_idx_deprec(hid_t fapl) +{ + hid_t file_id = -1; /* File ID */ + hid_t group_id = -1; /* Group ID */ + hid_t gcpl_id = -1; /* Group creation property list ID */ + H5_index_t idx_type; /* Type of index to operate on */ + H5_iter_order_t order; /* Order within in the index */ + unsigned use_index; /* Use index on creation order values */ + unsigned max_compact; /* Maximum # of links to store in group compactly */ + unsigned min_dense; /* Minimum # of links to store in group "densely" */ + H5L_info1_t linfo; /* Link info struct */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char filename[NAME_BUF_SIZE];/* File name */ + char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ + unsigned u; /* Local index variable */ + herr_t ret; /* Generic return value */ + + /* Loop over operating on different indices on link fields */ + for(idx_type = H5_INDEX_NAME; idx_type <= H5_INDEX_CRT_ORDER; idx_type++) { + /* Loop over operating in different orders */ + for(order = H5_ITER_INC; order <=H5_ITER_DEC; order++) { + /* Loop over using index for creation order value */ + for(use_index = FALSE; use_index <= TRUE; use_index++) { + /* Print appropriate test message */ + if(idx_type == H5_INDEX_CRT_ORDER) { + if(order == H5_ITER_INC) { + if(use_index) + TESTING("deleting links by creation order index in increasing order w/creation order index using deprecated routines") + else + TESTING("deleting links by creation order index in increasing order w/o creation order index using deprecated routines") + } /* end if */ + else { + if(use_index) + TESTING("deleting links by creation order index in decreasing order w/creation order index using deprecated routines") + else + TESTING("deleting links by creation order index in decreasing order w/o creation order index using deprecated routines") + } /* end else */ + } /* end if */ + else { + if(order == H5_ITER_INC) { + if(use_index) + TESTING("deleting links by name index in increasing order w/creation order index using deprecated routines") + else + TESTING("deleting links by name index in increasing order w/o creation order index using deprecated routines") + } /* end if */ + else { + if(use_index) + TESTING("deleting links by name index in decreasing order w/creation order index using deprecated routines") + else + TESTING("deleting links by name index in decreasing order w/o creation order index using deprecated routines") + } /* end else */ + } /* end else */ + + /* Create file */ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create group creation property list */ + if((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) TEST_ERROR + + /* Set creation order tracking & indexing on group */ + if(H5Pset_link_creation_order(gcpl_id, (H5P_CRT_ORDER_TRACKED | (use_index ? H5P_CRT_ORDER_INDEXED : (unsigned)0))) < 0) TEST_ERROR + + /* Create group with creation order tracking on */ + if((group_id = H5Gcreate2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT, gcpl_id, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Query the group creation properties */ + if(H5Pget_link_phase_change(gcpl_id, &max_compact, &min_dense) < 0) TEST_ERROR + + /* Delete links from one end */ + + /* Check for deletion on empty group */ + H5E_BEGIN_TRY { + ret = H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)0, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Check for deletion on non-existing group */ + H5E_BEGIN_TRY { + ret = H5Ldelete_by_idx(group_id, "None", idx_type, order, (hsize_t)0, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Create several links, up to limit of compact form */ + for(u = 0; u < max_compact; u++) { + hid_t group_id2; /* Group ID */ + + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Create hard link, with group object */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + + /* Verify link information for new link */ + if(link_info_by_idx_check_deprec(group_id, objname, (hsize_t)u, TRUE, use_index) < 0) TEST_ERROR + } /* end for */ + + /* Verify state of group (compact) */ + if(H5G__has_links_test(group_id, NULL) != TRUE) TEST_ERROR + + /* Check for out of bound deletion */ + H5E_BEGIN_TRY { + ret = H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)u, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Delete links from compact group */ + for(u = 0; u < (max_compact - 1); u++) { + /* Delete first link in appropriate order */ + if(H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)0, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify the link information for first link in appropriate order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", idx_type, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) { + if(linfo.corder != (u + 1)) TEST_ERROR + } /* end if */ + else { + if(linfo.corder != (max_compact - (u + 2))) TEST_ERROR + } /* end else */ + + /* Verify the name for first link in appropriate order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", idx_type, order, (hsize_t)0, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) + HDsnprintf(objname, sizeof(objname), "filler %02u", (u + 1)); + else + HDsnprintf(objname, sizeof(objname), "filler %02u", (max_compact - (u + 2))); + if(HDstrcmp(objname, tmpname)) TEST_ERROR + } /* end for */ + + /* Delete last link */ + if(H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)0, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify state of group (empty) */ + if(H5G__has_links_test(group_id, NULL) == TRUE) TEST_ERROR + + /* Create more links, to push group into dense form */ + for(u = 0; u < (max_compact * 2); u++) { + hid_t group_id2; /* Group ID */ + + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Create hard link, with group object */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + + /* Verify state of group (dense) */ + if(u >= max_compact) + if(H5G__is_new_dense_test(group_id) != TRUE) TEST_ERROR + + /* Verify link information for new link */ + if(link_info_by_idx_check_deprec(group_id, objname, (hsize_t)u, TRUE, use_index) < 0) TEST_ERROR + } /* end for */ + + /* Check for out of bound deletion again */ + H5E_BEGIN_TRY { + ret = H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)u, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Delete links from dense group, in appropriate order */ + for(u = 0; u < ((max_compact * 2) - 1); u++) { + /* Delete first link in appropriate order */ + if(H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)0, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify the link information for first link in appropriate order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", idx_type, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) { + if(linfo.corder != (u + 1)) TEST_ERROR + } /* end if */ + else { + if(linfo.corder != ((max_compact * 2) - (u + 2))) TEST_ERROR + } /* end else */ + + /* Verify the name for first link in appropriate order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", idx_type, order, (hsize_t)0, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) + HDsnprintf(objname, sizeof(objname), "filler %02u", (u + 1)); + else + HDsnprintf(objname, sizeof(objname), "filler %02u", ((max_compact * 2) - (u + 2))); + if(HDstrcmp(objname, tmpname)) TEST_ERROR + } /* end for */ + + /* Delete last link */ + if(H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)0, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify state of group (empty) */ + if(H5G__has_links_test(group_id, NULL) == TRUE) TEST_ERROR + if(H5G__is_new_dense_test(group_id) == TRUE) TEST_ERROR + + /* Check for deletion on empty group again */ + H5E_BEGIN_TRY { + ret = H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)0, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Delete links in middle */ + + /* Create more links, to push group into dense form */ + for(u = 0; u < (max_compact * 2); u++) { + hid_t group_id2; /* Group ID */ + + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Create hard link, with group object */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + + /* Verify state of group (dense) */ + if(u >= max_compact) + if(H5G__is_new_dense_test(group_id) != TRUE) TEST_ERROR + + /* Verify link information for new link */ + if(link_info_by_idx_check_deprec(group_id, objname, (hsize_t)u, TRUE, use_index) < 0) TEST_ERROR + } /* end for */ + + /* Delete every other link from dense group, in appropriate order */ + for(u = 0; u < max_compact; u++) { + /* Delete link */ + if(H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)u, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify the link information for current link in appropriate order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", idx_type, order, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) { + if(linfo.corder != ((u * 2) + 1)) TEST_ERROR + } /* end if */ + else { + if(linfo.corder != ((max_compact * 2) - ((u * 2) + 2))) TEST_ERROR + } /* end else */ + + /* Verify the name for current link in appropriate order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", idx_type, order, (hsize_t)u, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) + HDsnprintf(objname, sizeof(objname), "filler %02u", ((u * 2) + 1)); + else + HDsnprintf(objname, sizeof(objname), "filler %02u", ((max_compact * 2) - ((u * 2) + 2))); + if(HDstrcmp(objname, tmpname)) TEST_ERROR + } /* end for */ + + /* Delete remaining links from dense group, in appropriate order */ + for(u = 0; u < (max_compact - 1); u++) { + /* Delete link */ + if(H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)0, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify the link information for first link in appropriate order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", idx_type, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) { + if(linfo.corder != ((u * 2) + 3)) TEST_ERROR + } /* end if */ + else { + if(linfo.corder != ((max_compact * 2) - ((u * 2) + 4))) TEST_ERROR + } /* end else */ + + /* Verify the name for first link in appropriate order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", idx_type, order, (hsize_t)0, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) + HDsnprintf(objname, sizeof(objname), "filler %02u", ((u * 2) + 3)); + else + HDsnprintf(objname, sizeof(objname), "filler %02u", ((max_compact * 2) - ((u * 2) + 4))); + if(HDstrcmp(objname, tmpname)) TEST_ERROR + } /* end for */ + + /* Delete last link */ + if(H5Ldelete_by_idx(group_id, ".", idx_type, order, (hsize_t)0, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify state of group (empty) */ + if(H5G__has_links_test(group_id, NULL) == TRUE) TEST_ERROR + if(H5G__is_new_dense_test(group_id) == TRUE) TEST_ERROR + + /* Close the group */ + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Close the group creation property list */ + if(H5Pclose(gcpl_id) < 0) TEST_ERROR + + /* Close the file */ + if(H5Fclose(file_id) < 0) TEST_ERROR + + PASSED(); + } /* end for */ + } /* end for */ + } /* end for */ + + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Pclose(gcpl_id); + H5Gclose(group_id); + H5Fclose(file_id); + } H5E_END_TRY; + return FAIL; +} /* end delete_by_idx_deprec() */ + +/*------------------------------------------------------------------------- + * Function: delete_by_idx_old_deprec + * + * Purpose: Create a old-format group and test deleting + * links by index. + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +delete_by_idx_old_deprec(hid_t fapl) +{ + hid_t file_id = -1; /* File ID */ + hid_t group_id = -1, group_id2 = -1; /* Group IDs */ + H5L_info1_t linfo; /* Link info struct */ + H5_iter_order_t order; /* Order within in the index */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char filename[NAME_BUF_SIZE];/* File name */ + haddr_t objno[CORDER_NLINKS]; /* Addresses of the objects created */ + char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ + unsigned u; /* Local index variable */ + herr_t ret; /* Generic return value */ + + /* Loop over operating in different orders */ + for(order = H5_ITER_INC; order <=H5_ITER_DEC; order++) { + /* Print test banner */ + if(order == H5_ITER_INC) + TESTING("deleting links by index in increasing order in old-style group using deprecated routines") + else + TESTING("deleting links by index in decreasing order in old-style group using deprecated routines") + + /* Create file */ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create group to operate on */ + if((group_id = H5Gcreate2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Delete links from one end */ + + /* Check for deletion in empty group */ + H5E_BEGIN_TRY { + ret = H5Ldelete_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Create several links */ + for(u = 0; u < CORDER_NLINKS; u++) { + H5O_info1_t oi; /* Buffer for querying object's info */ + + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Create group */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Retrieve group's address on disk */ + if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + objno[u] = oi.addr; + + /* Close group */ + if(H5Gclose(group_id2) < 0) TEST_ERROR + } /* end for */ + + /* Check for bad index type deletion */ + H5E_BEGIN_TRY { + ret = H5Ldelete_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, order, (hsize_t)0, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Check for out of bounds deletion */ + H5E_BEGIN_TRY { + ret = H5Ldelete_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Delete links, in appropriate order */ + for(u = 0; u < (CORDER_NLINKS - 1); u++) { + unsigned dec_u = CORDER_NLINKS - (u + 2); /* Decreasing mapped index */ + + /* Delete first link in appropriate order */ + if(H5Ldelete_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify the link information for first link in appropriate order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) { + if(H5F_addr_ne(linfo.u.address, objno[u + 1])) TEST_ERROR + } /* end if */ + else { + if(H5F_addr_ne(linfo.u.address, objno[dec_u])) TEST_ERROR + } /* end else */ + + /* Verify the name for first link in appropriate order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) + HDsnprintf(objname, sizeof(objname), "filler %02u", (u + 1)); + else + HDsnprintf(objname, sizeof(objname), "filler %02u", dec_u); + if(HDstrcmp(objname, tmpname)) TEST_ERROR + } /* end for */ + + /* Delete last link */ + if(H5Ldelete_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, H5P_DEFAULT) < 0) TEST_ERROR + + /* Check for deletion in empty group (again) */ + H5E_BEGIN_TRY { + ret = H5Ldelete_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, H5P_DEFAULT); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Verify state of group */ + if(H5G__has_stab_test(group_id) != TRUE) TEST_ERROR + + /* Delete links in middle */ + + /* Create several links */ + for(u = 0; u < CORDER_NLINKS; u++) { + H5O_info1_t oi; /* Buffer for querying object's info */ + + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Create group */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Retrieve group's address on disk */ + if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + objno[u] = oi.addr; + + /* Close group */ + if(H5Gclose(group_id2) < 0) TEST_ERROR + } /* end for */ + + /* Delete every other link from group, in appropriate order */ + for(u = 0; u < (CORDER_NLINKS / 2); u++) { + unsigned dec_u = CORDER_NLINKS - ((u * 2) + 2); /* Decreasing mapped index */ + + /* Delete link */ + if(H5Ldelete_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify the link information for current link in appropriate order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) { + if(H5F_addr_ne(linfo.u.address, objno[(u * 2) + 1])) TEST_ERROR + } /* end if */ + else { + if(H5F_addr_ne(linfo.u.address, objno[dec_u])) TEST_ERROR + } /* end else */ + + /* Verify the name for current link in appropriate order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) + HDsnprintf(objname, sizeof(objname), "filler %02u", ((u * 2) + 1)); + else + HDsnprintf(objname, sizeof(objname), "filler %02u", dec_u); + if(HDstrcmp(objname, tmpname)) TEST_ERROR + } /* end for */ + + /* Delete remaining links from group, in appropriate order */ + for(u = 0; u < ((CORDER_NLINKS / 2) - 1); u++) { + unsigned dec_u = CORDER_NLINKS - ((u * 2) + 4); /* Decreasing mapped index */ + + /* Delete link */ + if(H5Ldelete_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify the link information for first link in appropriate order */ + HDmemset(&linfo, 0, sizeof(linfo)); + if(H5Lget_info_by_idx1(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) { + if(H5F_addr_ne(linfo.u.address, objno[(u * 2) + 3])) TEST_ERROR + } /* end if */ + else { + if(H5F_addr_ne(linfo.u.address, objno[dec_u])) TEST_ERROR + } /* end else */ + + /* Verify the name for first link in appropriate order */ + HDmemset(tmpname, 0, (size_t)NAME_BUF_SIZE); + if(H5Lget_name_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, tmpname, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR + if(order == H5_ITER_INC) + HDsnprintf(objname, sizeof(objname), "filler %02u", ((u * 2) + 3)); + else + HDsnprintf(objname, sizeof(objname), "filler %02u", dec_u); + if(HDstrcmp(objname, tmpname)) TEST_ERROR + } /* end for */ + + /* Delete last link */ + if(H5Ldelete_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, H5P_DEFAULT) < 0) TEST_ERROR + + /* Verify state of group */ + if(H5G__has_stab_test(group_id) != TRUE) TEST_ERROR + + /* Close the group */ + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Close the file */ + if(H5Fclose(file_id) < 0) TEST_ERROR + + PASSED(); + } /* end for */ + + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Gclose(group_id); + H5Fclose(file_id); + } H5E_END_TRY; + + return FAIL; +} /* end delete_by_idx_old_deprec() */ + +/*------------------------------------------------------------------------- + * Function: link_iterate_deprec_cb + * + * Purpose: Callback routine for iterating over links in group + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +link_iterate_deprec_cb(hid_t group_id, const char *link_name, const H5L_info1_t *info, + void *_op_data) +{ + link_iter_info_t *op_data = (link_iter_info_t *)_op_data; /* User data */ + char objname[NAME_BUF_SIZE]; /* Object name */ + H5L_info1_t my_info; /* Local link info */ + + /* Increment # of times the callback was called */ + op_data->ncalled++; + + /* Get the link information directly to compare */ + if(H5Lget_info1(group_id, link_name, &my_info, H5P_DEFAULT) < 0) + return H5_ITER_ERROR; + + /* Check more things for link iteration (vs. group iteration) */ + if(info) { + /* Check for correct order of iteration */ + /* (if we are operating in increasing or decreasing order) */ + if(op_data->order != H5_ITER_NATIVE) + if(info->corder != op_data->curr) + return H5_ITER_ERROR; + + /* Compare link info structs */ + if(info->type != my_info.type) + return H5_ITER_ERROR; + if(info->corder_valid != my_info.corder_valid) + return H5_ITER_ERROR; + if(info->corder != my_info.corder) + return H5_ITER_ERROR; + if(info->cset != my_info.cset) + return H5_ITER_ERROR; + if(H5F_addr_ne(info->u.address, my_info.u.address)) + return H5_ITER_ERROR; + } /* end if */ + + /* Verify name of link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", (unsigned)my_info.corder); + if(HDstrcmp(link_name, objname)) + return H5_ITER_ERROR; + + /* Check if we've visited this link before */ + if((size_t)op_data->curr >= op_data->max_visit) + return H5_ITER_ERROR; + if(op_data->visited[op_data->curr]) + return H5_ITER_ERROR; + op_data->visited[op_data->curr] = TRUE; + + /* Advance to next value, in correct direction */ + if(op_data->order != H5_ITER_DEC) + op_data->curr++; + else + op_data->curr--; + + /* Check for stopping in the middle of iterating */ + if(op_data->stop > 0) + if(--op_data->stop == 0) + return CORDER_ITER_STOP; + + return H5_ITER_CONT; +} /* end link_iterate_deprec_cb() */ + +/*------------------------------------------------------------------------- + * Function: group_iterate_deprec_cb + * + * Purpose: Callback routine for iterating over links in group with + * H5Giterate() + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +group_iterate_deprec_cb(hid_t group_id, const char *link_name, void *_op_data) +{ + return link_iterate_deprec_cb(group_id, link_name, NULL, _op_data); +} /* end group_iterate_deprec_cb() */ + +/*------------------------------------------------------------------------- + * Function: link_iterate_fail_deprec_cb + * + * Purpose: Callback routine for iterating over links in group that + * always returns failure + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +link_iterate_fail_deprec_cb(hid_t H5_ATTR_UNUSED group_id, const char H5_ATTR_UNUSED *link_name, + const H5L_info1_t H5_ATTR_UNUSED *info, void H5_ATTR_UNUSED *_op_data) +{ + return H5_ITER_ERROR; +} /* end link_iterate_fail_deprec_cb() */ + +/*------------------------------------------------------------------------- + * Function: link_iterate_check_deprec + * + * Purpose: Check iteration over links in a group + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +link_iterate_check_deprec(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, + unsigned max_links, link_iter_info_t *iter_info) +{ + unsigned v; /* Local index variable */ + hsize_t skip; /* # of links to skip in group */ + int gskip; /* # of links to skip in group, with H5Giterate */ + herr_t ret; /* Generic return value */ + + /* Iterate over links in group */ + iter_info->nskipped = (unsigned)(skip = 0); + iter_info->order = order; + iter_info->stop = -1; + iter_info->ncalled = 0; + iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if(H5Literate1(group_id, idx_type, order, &skip, link_iterate_deprec_cb, iter_info) < 0) TEST_ERROR + + /* Verify that we visited all the links */ + if(skip != max_links) TEST_ERROR + for(v = 0; v < max_links; v++) + if(iter_info->visited[v] == FALSE) TEST_ERROR + + /* Iterate over links in group, with H5Giterate */ + iter_info->nskipped = (unsigned)(gskip = 0); + iter_info->order = order; + iter_info->stop = -1; + iter_info->ncalled = 0; + iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if(H5Giterate(group_id, ".", &gskip, group_iterate_deprec_cb, iter_info) < 0) TEST_ERROR + + /* Verify that we visited all the links */ + if(gskip != (int)max_links) TEST_ERROR + for(v = 0; v < max_links; v++) + if(iter_info->visited[v] == FALSE) TEST_ERROR + + /* Skip over some links in group */ + iter_info->nskipped = (unsigned)(skip = max_links / 2); + iter_info->order = order; + iter_info->stop = -1; + iter_info->ncalled = 0; + iter_info->curr = (int64_t)(order != H5_ITER_DEC ? skip : ((max_links - 1) - skip)); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if(H5Literate1(group_id, idx_type, order, &skip, link_iterate_deprec_cb, iter_info) < 0) TEST_ERROR + + /* Verify that we visited all the links */ + if(skip != max_links) TEST_ERROR + if(order == H5_ITER_INC) { + for(v = 0; v < (max_links / 2); v++) + if(iter_info->visited[v + (max_links / 2)] == FALSE) TEST_ERROR + } /* end if */ + else if(order == H5_ITER_DEC) { + for(v = 0; v < (max_links / 2); v++) + if(iter_info->visited[v] == FALSE) TEST_ERROR + } /* end if */ + else { + unsigned nvisit = 0; /* # of links visited */ + + HDassert(order == H5_ITER_NATIVE); + for(v = 0; v < max_links; v++) + if(iter_info->visited[v] == TRUE) + nvisit++; + + if(nvisit != (max_links / 2)) TEST_ERROR + } /* end else */ + + /* Skip over some links in group, with H5Giterate */ + iter_info->nskipped = (unsigned)(gskip = (int)(max_links / 2)); + iter_info->order = order; + iter_info->stop = -1; + iter_info->ncalled = 0; + iter_info->curr = order != H5_ITER_DEC ? (unsigned)gskip : ((max_links - 1) - (unsigned)gskip); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if(H5Giterate(group_id, ".", &gskip, group_iterate_deprec_cb, iter_info) < 0) TEST_ERROR + + /* Verify that we visited all the links */ + if(gskip != (int)max_links) TEST_ERROR + if(order == H5_ITER_INC) { + for(v = 0; v < (max_links / 2); v++) + if(iter_info->visited[v + (max_links / 2)] == FALSE) TEST_ERROR + } /* end if */ + else if(order == H5_ITER_DEC) { + for(v = 0; v < (max_links / 2); v++) + if(iter_info->visited[v] == FALSE) TEST_ERROR + } /* end if */ + else { + unsigned nvisit = 0; /* # of links visited */ + + HDassert(order == H5_ITER_NATIVE); + for(v = 0; v < max_links; v++) + if(iter_info->visited[v] == TRUE) + nvisit++; + + if(nvisit != (max_links / 2)) TEST_ERROR + } /* end else */ + + /* Iterate over links in group, stopping in the middle */ + iter_info->nskipped = (unsigned)(skip = 0); + iter_info->order = order; + iter_info->stop = 3; + iter_info->ncalled = 0; + iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if((ret = H5Literate1(group_id, idx_type, order, &skip, link_iterate_deprec_cb, iter_info)) < 0) TEST_ERROR + if(ret != CORDER_ITER_STOP) TEST_ERROR + if(iter_info->ncalled != 3) TEST_ERROR + + /* Iterate over links in group, stopping in the middle, with H5Giterate() */ + iter_info->nskipped = (unsigned)(gskip = 0); + iter_info->order = order; + iter_info->stop = 3; + iter_info->ncalled = 0; + iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if((ret = H5Giterate(group_id, ".", &gskip, group_iterate_deprec_cb, iter_info)) < 0) TEST_ERROR + if(ret != CORDER_ITER_STOP) TEST_ERROR + if(iter_info->ncalled != 3) TEST_ERROR + + /* Check for iteration routine indicating failure */ + skip = 0; + H5E_BEGIN_TRY { + ret = H5Literate1(group_id, idx_type, order, &skip, link_iterate_fail_deprec_cb, NULL); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Success */ + return SUCCEED; + +error: + return FAIL; +} /* end link_iterate_check_deprec() */ + +/*------------------------------------------------------------------------- + * Function: link_iterate_deprec + * + * Purpose: Create a group with creation order indices and test iterating over + * links by index. + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Quincey Koziol + * Tuesday, November 14, 2006 + * + *------------------------------------------------------------------------- + */ +static int +link_iterate_deprec(hid_t fapl) +{ + hid_t file_id = (-1); /* File ID */ + hid_t group_id = (-1); /* Group ID */ + hid_t gcpl_id = (-1); /* Group creation property list ID */ + H5_index_t idx_type; /* Type of index to operate on */ + H5_iter_order_t order; /* Order within in the index */ + unsigned use_index; /* Use index on creation order values */ + unsigned max_compact; /* Maximum # of links to store in group compactly */ + unsigned min_dense; /* Minimum # of links to store in group "densely" */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char filename[NAME_BUF_SIZE];/* File name */ + link_iter_info_t iter_info; /* Iterator info */ + hbool_t *visited = NULL; /* Array of flags for visiting links */ + hsize_t skip; /* # of links to skip in group */ + unsigned u; /* Local index variable */ + herr_t ret; /* Generic return value */ + + /* Create group creation property list */ + if((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) TEST_ERROR + + /* Query the group creation properties */ + if(H5Pget_link_phase_change(gcpl_id, &max_compact, &min_dense) < 0) TEST_ERROR + + /* Allocate the "visited link" array */ + iter_info.max_visit = max_compact * 2; + if(NULL == (visited = (hbool_t *)HDmalloc(sizeof(hbool_t) * iter_info.max_visit))) TEST_ERROR + iter_info.visited = visited; + + /* Loop over operating on different indices on link fields */ + for(idx_type = H5_INDEX_NAME; idx_type <= H5_INDEX_CRT_ORDER; idx_type++) { + /* Loop over operating in different orders */ + for(order = H5_ITER_INC; order <=H5_ITER_NATIVE; order++) { + /* Loop over using index for creation order value */ + for(use_index = FALSE; use_index <= TRUE; use_index++) { + /* Print appropriate test message */ + if(idx_type == H5_INDEX_CRT_ORDER) { + if(order == H5_ITER_INC) { + if(use_index) + TESTING("iterating over links by creation order index in increasing order w/creation order index using deprecated routines") + else + TESTING("iterating over links by creation order index in increasing order w/o creation order index using deprecated routines") + } /* end if */ + else if(order == H5_ITER_DEC) { + if(use_index) + TESTING("iterating over links by creation order index in decreasing order w/creation order index using deprecated routines") + else + TESTING("iterating over links by creation order index in decreasing order w/o creation order index using deprecated routines") + } /* end else */ + else { + HDassert(order == H5_ITER_NATIVE); + if(use_index) + TESTING("iterating over links by creation order index in native order w/creation order index using deprecated routines") + else + TESTING("iterating over links by creation order index in native order w/o creation order index using deprecated routines") + } /* end else */ + } /* end if */ + else { + if(order == H5_ITER_INC) { + if(use_index) + TESTING("iterating over links by name index in increasing order w/creation order index using deprecated routines") + else + TESTING("iterating over links by name index in increasing order w/o creation order index using deprecated routines") + } /* end if */ + else if(order == H5_ITER_DEC) { + if(use_index) + TESTING("iterating over links by name index in decreasing order w/creation order index using deprecated routines") + else + TESTING("iterating over links by name index in decreasing order w/o creation order index using deprecated routines") + } /* end else */ + else { + HDassert(order == H5_ITER_NATIVE); + if(use_index) + TESTING("iterating over links by name index in native order w/creation order index using deprecated routines") + else + TESTING("iterating over links by name index in native order w/o creation order index using deprecated routines") + } /* end else */ + } /* end else */ + + /* Create file */ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Set creation order tracking & indexing on group */ + if(H5Pset_link_creation_order(gcpl_id, (H5P_CRT_ORDER_TRACKED | (use_index ? H5P_CRT_ORDER_INDEXED : (unsigned)0))) < 0) TEST_ERROR + + /* Create group with creation order tracking on */ + if((group_id = H5Gcreate2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT, gcpl_id, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Check for iteration on empty group */ + /* (should be OK) */ + if(H5Literate1(group_id, idx_type, order, NULL, link_iterate_deprec_cb, NULL) < 0) TEST_ERROR + + /* Create several links, up to limit of compact form */ + for(u = 0; u < max_compact; u++) { + hid_t group_id2; /* Group ID */ + + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Create hard link, with group object */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + } /* end for */ + + /* Verify state of group (compact) */ + if(H5G__has_links_test(group_id, NULL) != TRUE) TEST_ERROR + + /* Check for out of bound iteration on compact group */ + skip = (hsize_t)u; + H5E_BEGIN_TRY { + ret = H5Literate1(group_id, idx_type, order, &skip, link_iterate_deprec_cb, NULL); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Test iteration over links in compact group */ + if(link_iterate_check_deprec(group_id, idx_type, order, u, &iter_info) < 0) TEST_ERROR + + /* Create more links, to push group into dense form */ + for(; u < (max_compact * 2); u++) { + hid_t group_id2; /* Group ID */ + + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Create hard link, with group object */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + } /* end for */ + + /* Verify state of group (dense) */ + if(H5G__is_new_dense_test(group_id) != TRUE) TEST_ERROR + + /* Check for out of bound iteration on dense group */ + skip = (hsize_t)u; + H5E_BEGIN_TRY { + ret = H5Literate1(group_id, idx_type, order, &skip, link_iterate_deprec_cb, NULL); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Test iteration over links in dense group */ + if(link_iterate_check_deprec(group_id, idx_type, order, u, &iter_info) < 0) TEST_ERROR + + + /* Close the group */ + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Close the file */ + if(H5Fclose(file_id) < 0) TEST_ERROR + + PASSED(); + } /* end for */ + } /* end for */ + } /* end for */ + + /* Close the group creation property list */ + if(H5Pclose(gcpl_id) < 0) TEST_ERROR + + /* Free resources */ + if(visited) + HDfree(visited); + + return SUCCEED; + +error: + /* Free resources */ + H5E_BEGIN_TRY { + H5Pclose(gcpl_id); + H5Gclose(group_id); + H5Fclose(file_id); + } H5E_END_TRY; + + if(visited) + HDfree(visited); + + return FAIL; +} /* end link_iterate_deprec() */ + +/*------------------------------------------------------------------------- + * Function: link_iterate_old_deprec_cb + * + * Purpose: Callback routine for iterating over [old] links in group + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +link_iterate_old_deprec_cb(hid_t group_id, const char *link_name, const H5L_info1_t *info, void *_op_data) +{ + link_iter_info_t *op_data = (link_iter_info_t *)_op_data; /* User data */ + char objname[NAME_BUF_SIZE]; /* Object name */ + H5L_info1_t my_info; /* Local link info */ + + /* Increment # of times the callback was called */ + op_data->ncalled++; + + /* Get the link information directly to compare */ + if(H5Lget_info1(group_id, link_name, &my_info, H5P_DEFAULT) < 0) + return H5_ITER_ERROR; + + /* Check more things for link iteration (vs. group iteration) */ + if(info) { + /* Compare link info structs */ + if(info->type != my_info.type) + return H5_ITER_ERROR; + if(info->corder_valid != my_info.corder_valid) + return H5_ITER_ERROR; + if(info->corder != my_info.corder) + return H5_ITER_ERROR; + if(info->cset != my_info.cset) + return H5_ITER_ERROR; + if(H5F_addr_ne(info->u.address, my_info.u.address)) + return H5_ITER_ERROR; + } /* end if */ + + /* Verify name of link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", (info ? (unsigned)op_data->curr : (unsigned)((op_data->ncalled - 1) + op_data->nskipped))); + if(HDstrcmp(link_name, objname)) + return H5_ITER_ERROR; + + /* Check if we've visited this link before */ + if((size_t)op_data->curr >= op_data->max_visit) + return H5_ITER_ERROR; + if(op_data->visited[op_data->curr]) + return H5_ITER_ERROR; + op_data->visited[op_data->curr] = TRUE; + + /* Advance to next value, in correct direction */ + if(op_data->order != H5_ITER_DEC) + op_data->curr++; + else + op_data->curr--; + + /* Check for stopping in the middle of iterating */ + if(op_data->stop > 0) + if(--op_data->stop == 0) + return CORDER_ITER_STOP; + + return H5_ITER_CONT; +} /* end link_iterate_old_deprec_cb() */ + +/*------------------------------------------------------------------------- + * Function: group_iterate_old_deprec_cb + * + * Purpose: Callback routine for iterating over links in group with + * H5Giterate() + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +group_iterate_old_deprec_cb(hid_t group_id, const char *link_name, void *_op_data) +{ + return link_iterate_old_deprec_cb(group_id, link_name, NULL, _op_data); +} /* end group_iterate_old_deprec_cb() */ + +/*------------------------------------------------------------------------- + * Function: link_iterate_old_check_deprec + * + * Purpose: Check iteration over [old] links in a group + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +link_iterate_old_check_deprec(hid_t group_id, H5_iter_order_t order, unsigned max_links, link_iter_info_t *iter_info) +{ + unsigned v; /* Local index variable */ + hsize_t skip; /* # of links to skip in group */ + int gskip; /* # of links to skip in group, with H5Giterate */ + herr_t ret; /* Generic return value */ + + /* Iterate over links in group */ + iter_info->nskipped = (unsigned)(skip = 0); + iter_info->order = order; + iter_info->stop = -1; + iter_info->ncalled = 0; + iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if(H5Literate1(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_deprec_cb, iter_info) < 0) TEST_ERROR + + /* Verify that we visited all the links */ + if(skip != max_links) TEST_ERROR + for(v = 0; v < max_links; v++) + if(iter_info->visited[v] == FALSE) TEST_ERROR + + /* Iterate over links in group, with H5Giterate */ + iter_info->nskipped = (unsigned)(gskip = 0); + iter_info->order = order; + iter_info->stop = -1; + iter_info->ncalled = 0; + iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if(H5Giterate(group_id, ".", &gskip, group_iterate_old_deprec_cb, iter_info) < 0) TEST_ERROR + + /* Verify that we visited all the links */ + if(gskip != (int)max_links) TEST_ERROR + for(v = 0; v < max_links; v++) + if(iter_info->visited[v] == FALSE) TEST_ERROR + + /* Skip over some links in group */ + iter_info->nskipped = (unsigned)(skip = max_links / 2); + iter_info->order = order; + iter_info->stop = -1; + iter_info->ncalled = 0; + iter_info->curr = (int64_t)(order != H5_ITER_DEC ? skip : ((max_links - 1) - skip)); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if(H5Literate1(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_deprec_cb, iter_info) < 0) TEST_ERROR + + /* Verify that we visited all the links */ + if(skip != max_links) TEST_ERROR + if(order == H5_ITER_INC) { + for(v = 0; v < (max_links / 2); v++) + if(iter_info->visited[v + (max_links / 2)] == FALSE) TEST_ERROR + } /* end if */ + else if(order == H5_ITER_DEC) { + for(v = 0; v < (max_links / 2); v++) + if(iter_info->visited[v] == FALSE) TEST_ERROR + } /* end if */ + else { + unsigned nvisit = 0; /* # of links visited */ + + HDassert(order == H5_ITER_NATIVE); + for(v = 0; v < max_links; v++) + if(iter_info->visited[v] == TRUE) + nvisit++; + + if(nvisit != (max_links / 2)) TEST_ERROR + } /* end else */ + + /* Skip over some links in group, with H5Giterate */ + iter_info->nskipped = (unsigned)(gskip = (int)(max_links / 2)); + iter_info->order = order; + iter_info->stop = -1; + iter_info->ncalled = 0; + iter_info->curr = order != H5_ITER_DEC ? (unsigned)gskip : ((max_links - 1) - (unsigned)gskip); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if(H5Giterate(group_id, ".", &gskip, group_iterate_old_deprec_cb, iter_info) < 0) TEST_ERROR + + /* Verify that we visited all the links */ + if(gskip != (int)max_links) TEST_ERROR + if(order == H5_ITER_INC) { + for(v = 0; v < (max_links / 2); v++) + if(iter_info->visited[v + (max_links / 2)] == FALSE) TEST_ERROR + } /* end if */ + else if(order == H5_ITER_DEC) { + for(v = 0; v < (max_links / 2); v++) + if(iter_info->visited[v] == FALSE) TEST_ERROR + } /* end if */ + else { + unsigned nvisit = 0; /* # of links visited */ + + HDassert(order == H5_ITER_NATIVE); + for(v = 0; v < max_links; v++) + if(iter_info->visited[v] == TRUE) + nvisit++; + + if(nvisit != (max_links / 2)) TEST_ERROR + } /* end else */ + + /* Iterate over links in group, stopping in the middle */ + iter_info->nskipped = (unsigned)(skip = 0); + iter_info->order = order; + iter_info->stop = 3; + iter_info->ncalled = 0; + iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if((ret = H5Literate1(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_deprec_cb, iter_info)) < 0) TEST_ERROR + if(ret != CORDER_ITER_STOP) TEST_ERROR + if(iter_info->ncalled != 3) TEST_ERROR + + /* Iterate over links in group, stopping in the middle, with H5Giterate() */ + iter_info->nskipped = (unsigned)(gskip = 0); + iter_info->order = order; + iter_info->stop = 3; + iter_info->ncalled = 0; + iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); + HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); + if((ret = H5Giterate(group_id, ".", &gskip, group_iterate_old_deprec_cb, iter_info)) < 0) TEST_ERROR + if(ret != CORDER_ITER_STOP) TEST_ERROR + if(iter_info->ncalled != 3) TEST_ERROR + + /* Check for iteration routine indicating failure */ + skip = 0; + H5E_BEGIN_TRY { + ret = H5Literate1(group_id, H5_INDEX_NAME, order, &skip, link_iterate_fail_deprec_cb, NULL); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Check for iteration w/bad location ID */ + skip = 0; + H5E_BEGIN_TRY { + ret = H5Literate1((hid_t)(-1), H5_INDEX_NAME, order, &skip, link_iterate_fail_deprec_cb, NULL); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + H5E_BEGIN_TRY { + ret = H5Giterate((hid_t)(-1), ".", &gskip, group_iterate_old_deprec_cb, iter_info); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Success */ + return SUCCEED; + +error: + return FAIL; +} /* end link_iterate_old_check_deprec() */ + +/*------------------------------------------------------------------------- + * Function: link_iterate_old_deprec + * + * Purpose: Create a "old-style" group and test iterating over links by index. + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +link_iterate_old_deprec(hid_t fapl) +{ + hid_t file_id = -1; /* File ID */ + hid_t group_id = -1; /* Group ID */ + H5_iter_order_t order; /* Order within in the index */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char filename[NAME_BUF_SIZE];/* File name */ + link_iter_info_t iter_info; /* Iterator info */ + hbool_t *visited = NULL; /* Array of flags for visiting links */ + hsize_t skip; /* # of links to skip in group */ + unsigned u; /* Local index variable */ + herr_t ret; /* Generic return value */ + + /* Allocate the "visited link" array */ + iter_info.max_visit = CORDER_NLINKS; + if(NULL == (visited = (hbool_t *)HDmalloc(sizeof(hbool_t) * iter_info.max_visit))) TEST_ERROR + iter_info.visited = visited; + + /* Loop over operating in different orders */ + for(order = H5_ITER_INC; order <=H5_ITER_NATIVE; order++) { + /* Print appropriate test message */ + if(order == H5_ITER_INC) { + TESTING("iterating over links by name index in increasing order in old-style group using deprecated routines") + } /* end if */ + else if(order == H5_ITER_DEC) { + TESTING("iterating over links by name index in decreasing order in old-style group using deprecated routines") + } /* end else */ + else { + HDassert(order == H5_ITER_NATIVE); + TESTING("iterating over links by name index in native order in old-style group using deprecated routines") + } /* end else */ + + /* Create file */ + h5_fixname(FILENAME[0], fapl, filename, sizeof filename); + if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + + /* Create group with creation order tracking on */ + if((group_id = H5Gcreate2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Check for iteration on empty group */ + /* (should be OK) */ + if(H5Literate1(group_id, H5_INDEX_NAME, order, NULL, link_iterate_old_deprec_cb, NULL) < 0) TEST_ERROR + + /* Create several links */ + for(u = 0; u < CORDER_NLINKS; u++) { + hid_t group_id2; /* Group ID */ + + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Create hard link, with group object */ + if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + if(H5Gclose(group_id2) < 0) TEST_ERROR + } /* end for */ + + /* Verify state of group (symbol table) */ + if(H5G__has_stab_test(group_id) != TRUE) TEST_ERROR + + /* Check for out of bound iteration on old-style group */ + skip = (hsize_t)u; + H5E_BEGIN_TRY { + ret = H5Literate1(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_deprec_cb, NULL); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Check for iteration on creation order */ + /* (should fail) */ + skip = (hsize_t)0; + H5E_BEGIN_TRY { + ret = H5Literate1(group_id, H5_INDEX_CRT_ORDER, order, &skip, link_iterate_old_deprec_cb, NULL); + } H5E_END_TRY; + if(ret >= 0) TEST_ERROR + + /* Test iteration over links in group */ + if(link_iterate_old_check_deprec(group_id, order, u, &iter_info) < 0) TEST_ERROR + + /* Close the group */ + if(H5Gclose(group_id) < 0) TEST_ERROR + + /* Close the file */ + if(H5Fclose(file_id) < 0) TEST_ERROR + + PASSED(); + } /* end for */ + + /* Free resources */ + if(visited) + HDfree(visited); + + return SUCCEED; + +error: + /* Free resources */ + H5E_BEGIN_TRY { + H5Gclose(group_id); + H5Fclose(file_id); + } H5E_END_TRY; + + if(visited) + HDfree(visited); + + return FAIL; +} /* end link_iterate_old_deprec() */ #endif /* H5_NO_DEPRECATED_SYMBOLS */ @@ -1642,7 +5666,7 @@ external_link_root(hid_t fapl, hbool_t new_format) { hid_t fid = -1; /* File ID */ hid_t gid = -1, gid2 = -1; /* Group IDs */ - H5L_info_t linfo; /* Link information */ + H5L_info2_t linfo; /* Link information */ char objname[NAME_BUF_SIZE]; /* Object name */ char filename1[NAME_BUF_SIZE]; char filename2[NAME_BUF_SIZE]; @@ -1674,7 +5698,7 @@ external_link_root(hid_t fapl, hbool_t new_format) if(H5Lcreate_external(filename1, "/", fid, "ext_link", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR /* Check information for external link */ - if(H5Lget_info(fid, "ext_link", &linfo, H5P_DEFAULT) < 0) goto error; + if(H5Lget_info2(fid, "ext_link", &linfo, H5P_DEFAULT) < 0) goto error; if(H5L_TYPE_EXTERNAL != linfo.type) { H5_FAILED(); HDputs(" Unexpected object type - should have been an external link"); @@ -1698,7 +5722,7 @@ external_link_root(hid_t fapl, hbool_t new_format) if(H5Lcreate_external(filename1, "///", fid, "ext_link2", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR /* Check information for external link */ - if(H5Lget_info(fid, "ext_link", &linfo, H5P_DEFAULT) < 0) goto error; + if(H5Lget_info2(fid, "ext_link", &linfo, H5P_DEFAULT) < 0) goto error; if(H5L_TYPE_EXTERNAL != linfo.type) { H5_FAILED(); HDputs(" Unexpected object type - should have been an external link"); @@ -5013,15 +9037,15 @@ error: static int external_link_query(hid_t fapl, hbool_t new_format) { - hid_t fid = -1; /* File ID */ - hid_t gid = -1; /* Group IDs */ - const char *file_name; /* Name of the file the external link points to */ - const char *object_name; /* Name of the object the external link points to */ - H5O_info_t oi; /* Object information */ - H5L_info_t li; /* Link information */ - char filename1[NAME_BUF_SIZE], - filename2[NAME_BUF_SIZE], /* Names of files to externally link across */ - query_buf[NAME_BUF_SIZE]; /* Buffer to hold query result */ + hid_t fid = -1; /* File ID */ + hid_t gid = -1; /* Group IDs */ + const char *file_name; /* Name of the file the external link points to */ + const char *object_name; /* Name of the object the external link points to */ + H5O_info2_t oi; /* Object information */ + H5L_info2_t li; /* Link information */ + char filename1[NAME_BUF_SIZE], + filename2[NAME_BUF_SIZE], /* Names of files to externally link across */ + query_buf[NAME_BUF_SIZE]; /* Buffer to hold query result */ if(new_format) TESTING("query aspects of external link (w/new group format)") @@ -5040,7 +9064,7 @@ external_link_query(hid_t fapl, hbool_t new_format) if(H5Lcreate_external(filename2, "///dst//", fid, "src", H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR /* Get size of buffer for external link */ - if(H5Lget_info(fid, "src", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "src", &li, H5P_DEFAULT) < 0) TEST_ERROR if(li.u.val_size != (1 + (HDstrlen(filename2) + 1) + (HDstrlen("/dst") + 1))) TEST_ERROR if (H5L_TYPE_EXTERNAL != li.type) { H5_FAILED(); @@ -5065,7 +9089,7 @@ external_link_query(hid_t fapl, hbool_t new_format) if((fid = H5Fopen(filename1, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR /* Get size of buffer for external link */ - if(H5Lget_info(fid, "src", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "src", &li, H5P_DEFAULT) < 0) TEST_ERROR if(li.u.val_size != (1 + (HDstrlen(filename2) + 1) + (HDstrlen("/dst") + 1))) TEST_ERROR if(H5L_TYPE_EXTERNAL != li.type) { H5_FAILED(); @@ -5084,7 +9108,7 @@ external_link_query(hid_t fapl, hbool_t new_format) if(HDstrcmp(object_name, "/dst")) TEST_ERROR /* Query information about object that external link points to */ - if(H5Oget_info_by_name2(fid, "src", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(fid, "src", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5O_TYPE_GROUP != oi.type) { H5_FAILED(); HDputs(" Unexpected object type - should have been a group"); @@ -5729,8 +9753,8 @@ external_link_closing(hid_t fapl, hbool_t new_format) filename3[NAME_BUF_SIZE], filename4[NAME_BUF_SIZE], /* Names of files to externally link across */ buf[NAME_BUF_SIZE]; /* misc. buffer */ - H5L_info_t li; - H5O_info_t oi; + H5L_info2_t li; + H5O_info2_t oi; hobj_ref_t obj_ref; if(new_format) @@ -5786,10 +9810,10 @@ external_link_closing(hid_t fapl, hbool_t new_format) if(H5Dclose(did) < 0) TEST_ERROR /* Test that getting info works */ - if(H5Lget_info(fid1, "elink/elink/elink/type1", &li, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Lget_info(fid1, "elink/elink/elink", &li, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(fid1, "elink/elink/elink/type1", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(fid1, "elink/elink/elink", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid1, "elink/elink/elink/type1", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid1, "elink/elink/elink", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(fid1, "elink/elink/elink/type1", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(fid1, "elink/elink/elink", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR /* Test move */ if(H5Lmove(fid1, "elink/elink/elink/group1", fid1, @@ -5876,7 +9900,7 @@ external_link_closing(hid_t fapl, hbool_t new_format) if(H5Gclose(gid) < 0) TEST_ERROR if((gid = H5Gcreate2(fid1, "elink/elink2/group2/group3/group4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if(H5Gclose(gid) < 0) TEST_ERROR - if(H5Oget_info_by_name2(fid1, "elink/elink2/group2/group3/group4", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(fid1, "elink/elink2/group2/group3/group4", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR /* Add a few regular groups and a soft link in file2 using intermediate group creation */ if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) TEST_ERROR @@ -5890,13 +9914,13 @@ external_link_closing(hid_t fapl, hbool_t new_format) */ if((gid = H5Gcreate2(fid1, "elink/file2group1/file2group2/slink/group3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if(H5Gclose(gid) < 0) TEST_ERROR - if(H5Lget_info(fid1, "elink/file2group1/file2group2/slink/group3", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid1, "elink/file2group1/file2group2/slink/group3", &li, H5P_DEFAULT) < 0) TEST_ERROR /* Some simpler tests */ if((gid = H5Gcreate2(fid1, "elink/file2group3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if(H5Gclose(gid) < 0) TEST_ERROR - if(H5Lget_info(fid1, "elink/file2group3", &li, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Lget_info(fid1, "elink/elink", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid1, "elink/file2group3", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid1, "elink/elink", &li, H5P_DEFAULT) < 0) TEST_ERROR /* Close file1, the only file that should still be open */ @@ -7168,19 +11192,19 @@ static herr_t UD_hard_create(const char H5_ATTR_UNUSED * link_name, hid_t loc_group, const void *udata, size_t udata_size, hid_t H5_ATTR_UNUSED lcpl_id) { - haddr_t addr; + H5O_token_t token; hid_t target_obj = -1; herr_t ret_value = 0; - if(udata_size != sizeof(haddr_t)) { + if(udata_size != sizeof(H5O_token_t)) { ret_value = -1; goto done; } /* end if */ - addr = *((const haddr_t *)udata); + token = *(const H5O_token_t *)udata; /* Open the object this link points to */ - target_obj = H5Oopen_by_addr(loc_group, addr); + target_obj = H5Oopen_by_token(loc_group, token); if(target_obj < 0) { ret_value = -1; goto done; @@ -7242,15 +11266,16 @@ UD_hard_traverse(const char H5_ATTR_UNUSED *link_name, hid_t cur_group, const void *udata, size_t udata_size, hid_t H5_ATTR_UNUSED lapl_id, hid_t H5_ATTR_UNUSED dxpl_id) { - haddr_t addr; + H5O_token_t token; hid_t ret_value = -1; - if(udata_size != sizeof(haddr_t)) + if(udata_size != sizeof(H5O_token_t)) return FAIL; - addr = *((const haddr_t *) udata); + token = *(const H5O_token_t *)udata; - ret_value = H5Oopen_by_addr(cur_group, addr); /* If this fails, our return value will be negative. */ + /* If this fails, our return value will be negative. */ + ret_value = H5Oopen_by_token(cur_group, token); return ret_value; } /* end UD_hard_traverse() */ @@ -7260,19 +11285,19 @@ static herr_t UD_hard_delete(const char H5_ATTR_UNUSED * link_name, hid_t file, const void *udata, size_t udata_size) { - haddr_t addr; + H5O_token_t token; hid_t target_obj = -1; herr_t ret_value = 0; - if(udata_size != sizeof(haddr_t)) { + if(udata_size != sizeof(H5O_token_t)) { ret_value = -1; goto done; } /* end if */ - addr = *((const haddr_t *) udata); + token = *(const H5O_token_t *)udata; /* Open the object this link points to */ - target_obj = H5Oopen_by_addr(file, addr); + target_obj = H5Oopen_by_token(file, token); if(target_obj < 0) { ret_value = -1; goto done; @@ -7328,24 +11353,12 @@ done: return ret_value; } /* end UD_hard_delete() */ -const H5L_class_t UD_hard_class[1] = {{ - H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ - (H5L_type_t)UD_HARD_TYPE, /* Link type id number */ - "UD_hard_link", /* Link class name for debugging */ - UD_hard_create, /* Creation callback */ - NULL, /* Move/rename callback */ - NULL, /* Copy callback */ - UD_hard_traverse, /* The actual traversal function */ - UD_hard_delete, /* Deletion callback */ - NULL /* Query callback */ -}}; - static int ud_hard_links(hid_t fapl) { hid_t fid = -1; /* File ID */ hid_t gid = -1, gid2 = -1; /* Group IDs */ - H5L_info_t li; /* Link information */ + H5L_info2_t li; /* Link information */ char objname[NAME_BUF_SIZE]; /* Object name */ h5_stat_size_t empty_size; /* Size of an empty file */ char filename[NAME_BUF_SIZE]; @@ -7378,13 +11391,13 @@ ud_hard_links(hid_t fapl) if((gid = H5Gcreate2(fid, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Get address for the group to give to the hard link */ - if(H5Lget_info(fid, "group", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "group", &li, H5P_DEFAULT) < 0) TEST_ERROR if(H5Gclose(gid) < 0) TEST_ERROR /* Create a user-defined "hard link" to the group using the address we got - * from H5Lget_info */ - if(H5Lcreate_ud(fid, "ud_link", (H5L_type_t)UD_HARD_TYPE, &(li.u.address), (size_t)sizeof(haddr_t), H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR + * from H5Lget_info2 */ + if(H5Lcreate_ud(fid, "ud_link", (H5L_type_t)UD_HARD_TYPE, &(li.u.token), sizeof(H5O_token_t), H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR /* Close and re-open file to ensure that data is written to disk */ if(H5Fclose(fid) < 0) TEST_ERROR @@ -7415,7 +11428,7 @@ ud_hard_links(hid_t fapl) if(H5Gclose(gid) < 0) FAIL_STACK_ERROR /* Check that H5Lget_objinfo works on the hard link */ - if(H5Lget_info(fid, "ud_link", &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lget_info2(fid, "ud_link", &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* UD hard links have no query function, thus return a "link length" of 0 */ if(li.u.val_size != 0) TEST_ERROR if(UD_HARD_TYPE != li.type) { @@ -7488,26 +11501,12 @@ error: return FAIL; } /* end UD_rereg_traverse() */ -/* This link class has the same ID number as the UD hard links but - * has a very different traversal function */ -const H5L_class_t UD_rereg_class[1] = {{ - H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ - (H5L_type_t)UD_HARD_TYPE, /* Link type id number */ - "UD_reregistered_type", /* Link class name for debugging */ - NULL, /* Creation callback */ - NULL, /* Move/rename callback */ - NULL, /* Copy callback */ - UD_rereg_traverse, /* The actual traversal function */ - NULL, /* Deletion callback */ - NULL /* Query callback */ -}}; - static int ud_link_reregister(hid_t fapl) { hid_t fid = -1; /* File ID */ hid_t gid = -1, gid2 = -1; /* Group IDs */ - H5L_info_t li; /* Link information */ + H5L_info2_t li; /* Link information */ char objname[NAME_BUF_SIZE]; /* Object name */ char filename[NAME_BUF_SIZE]; h5_stat_size_t empty_size; /* Size of an empty file */ @@ -7536,11 +11535,11 @@ ud_link_reregister(hid_t fapl) /* Point a UD defined hard link to a group in the same way as the previous test */ if((gid = H5Gcreate2(fid, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR - if (H5Lget_info(fid, "group", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "group", &li, H5P_DEFAULT) < 0) TEST_ERROR if(H5Gclose(gid) < 0) TEST_ERROR - if(H5Lcreate_ud(fid, "ud_link", (H5L_type_t)UD_HARD_TYPE, &(li.u.address), - sizeof(li.u.address), H5P_DEFAULT, H5P_DEFAULT) < 0) + if(H5Lcreate_ud(fid, "ud_link", (H5L_type_t)UD_HARD_TYPE, &(li.u.token), + sizeof(H5O_token_t), H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR /* Create a group named REREG_TARGET_NAME in the same group as the ud link */ @@ -7560,8 +11559,8 @@ ud_link_reregister(hid_t fapl) /* Verify that we can't create any new links of this type */ H5E_BEGIN_TRY { - if(H5Lcreate_ud(fid, "ud_link2", (H5L_type_t)UD_HARD_TYPE, &(li.u.address), - sizeof(li.u.address), H5P_DEFAULT, H5P_DEFAULT) >= 0) + if(H5Lcreate_ud(fid, "ud_link2", (H5L_type_t)UD_HARD_TYPE, &(li.u.token), + sizeof(H5O_token_t), H5P_DEFAULT, H5P_DEFAULT) >= 0) TEST_ERROR } H5E_END_TRY @@ -7643,7 +11642,7 @@ error: /*------------------------------------------------------------------------- - * Function: ud_callbacks + * Function: UD_cb_create * * Purpose: Check that all callbacks are called and are given the correct * information. @@ -7759,25 +11758,13 @@ error: return FAIL; } /* end UD_cb_query() */ -const H5L_class_t UD_cb_class[1] = {{ - H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ - (H5L_type_t)UD_CB_TYPE, /* Link type id number */ - NULL, /* NULL name (to make sure this doesn't break anything */ - UD_cb_create, /* Creation callback */ - UD_cb_move, /* Move/rename callback */ - UD_cb_move, /* Copy callback */ - UD_cb_traverse, /* The actual traversal function */ - UD_cb_delete, /* Deletion callback */ - UD_cb_query /* Query callback */ -}}; - static int ud_callbacks(hid_t fapl, hbool_t new_format) { hid_t fid = -1; /* File ID */ hid_t gid = -1; /* Group ID */ hid_t lcpl = -1; /* Link Creation PL */ - H5L_info_t li; /* Link information */ + H5L_info2_t li; /* Link information */ char ud_target_name[] = UD_CB_TARGET; /* Link target name */ char filename[NAME_BUF_SIZE]; char query_buf[NAME_BUF_SIZE]; @@ -7822,7 +11809,7 @@ ud_callbacks(hid_t fapl, hbool_t new_format) if(H5Gclose(gid) < 0) TEST_ERROR /* Query the link to test its query callback */ - if(H5Lget_info(fid, UD_CB_LINK_NAME, &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, UD_CB_LINK_NAME, &li, H5P_DEFAULT) < 0) TEST_ERROR if(li.u.val_size != 16) TEST_ERROR if (UD_CB_TYPE != li.type) { H5_FAILED(); @@ -7854,7 +11841,7 @@ ud_callbacks(hid_t fapl, hbool_t new_format) if(H5Pclose(lcpl) < 0) FAIL_STACK_ERROR /* Check its character encoding */ - if(H5Lget_info(fid, UD_CB_LINK_NAME, &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lget_info2(fid, UD_CB_LINK_NAME, &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(li.cset != H5T_CSET_UTF8) TEST_ERROR /* Unregister the link class so the library forgets what its callbacks do */ @@ -7870,7 +11857,7 @@ ud_callbacks(hid_t fapl, hbool_t new_format) } H5E_END_TRY /* The query callback should NOT fail, but should be unable to give a linklen */ - if(H5Lget_info(fid, UD_CB_LINK_NAME, &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lget_info2(fid, UD_CB_LINK_NAME, &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(li.u.val_size != 0) TEST_ERROR if(li.type != UD_CB_TYPE) TEST_ERROR @@ -7924,18 +11911,6 @@ error: return FAIL; } /* end UD_plist_traverse() */ -const H5L_class_t UD_plist_class[1] = {{ - H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ - (H5L_type_t)UD_PLIST_TYPE, /* Link type id number */ - "UD_plist_link", /* Link class name for debugging */ - NULL, /* Creation callback */ - NULL, /* Move/rename callback */ - NULL, /* Copy callback */ - UD_plist_traverse, /* The actual traversal function */ - NULL, /* Deletion callback */ - NULL /* Query callback */ -}}; - static int lapl_udata(hid_t fapl, hbool_t new_format) { @@ -8231,12 +12206,12 @@ const H5L_class_t UD_error4_class[1] = {{ static int ud_link_errors(hid_t fapl, hbool_t new_format) { - hid_t fid = -1; /* File ID */ - hid_t gid = -1; /* Group IDs */ - char group_name[NAME_BUF_SIZE]; - char filename[NAME_BUF_SIZE]; - char query_buf[NAME_BUF_SIZE]; - H5L_info_t li; /* Link information */ + hid_t fid = -1; /* File ID */ + hid_t gid = -1; /* Group IDs */ + char group_name[NAME_BUF_SIZE]; + char filename[NAME_BUF_SIZE]; + char query_buf[NAME_BUF_SIZE]; + H5L_info2_t li; /* Link information */ if(new_format) TESTING("user-defined link error conditions (w/new group format)") @@ -8301,7 +12276,7 @@ ud_link_errors(hid_t fapl, hbool_t new_format) if(H5Ldelete(fid, "ud_link", H5P_DEFAULT) >= 0) TEST_ERROR /* The query callback will fail */ - if(H5Lget_info(fid, "ud_link", &li, H5P_DEFAULT) >=0) TEST_ERROR + if(H5Lget_info2(fid, "ud_link", &li, H5P_DEFAULT) >=0) TEST_ERROR } H5E_END_TRY /* Now use a class with different callback functions */ @@ -8314,7 +12289,7 @@ ud_link_errors(hid_t fapl, hbool_t new_format) if(H5Lcopy(fid, "ud_link", fid, "copy_succ", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* The query callback will succeed when we only want to get the size of the buffer... */ - if(H5Lget_info(fid, "ud_link", &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lget_info2(fid, "ud_link", &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(li.u.val_size != 0) TEST_ERROR /* ...but fail when we try to write data to the buffer itself*/ H5E_BEGIN_TRY { @@ -8325,7 +12300,7 @@ ud_link_errors(hid_t fapl, hbool_t new_format) if(H5Lregister(UD_cbfail_class3) < 0) FAIL_STACK_ERROR /* Now querying should succeed */ - if(H5Lget_info(fid, "ud_link", &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lget_info2(fid, "ud_link", &li, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(li.u.val_size != 8) TEST_ERROR if(H5Lget_val(fid, "ud_link", query_buf, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(HDstrcmp(query_buf, "succeed") != 0) TEST_ERROR @@ -8491,9 +12466,9 @@ lapl_nlinks(hid_t fapl, hbool_t new_format) /* H5Ldelete */ if(H5Ldelete(fid, "soft17/soft_link", plist) < 0) TEST_ERROR - /* H5Lget_val and H5Lget_info */ + /* H5Lget_val and H5Lget_info2 */ if(H5Lget_val(fid, "soft17", NULL, (size_t)0, plist) < 0) TEST_ERROR - if(H5Lget_info(fid, "soft17", NULL, plist) < 0) TEST_ERROR + if(H5Lget_info2(fid, "soft17", NULL, plist) < 0) TEST_ERROR /* H5Lcreate_external and H5Lcreate_ud */ if(H5Lcreate_external("filename", "path", fid, "soft17/extlink", H5P_DEFAULT, plist) < 0) TEST_ERROR @@ -8592,12 +12567,12 @@ error: static int linkinfo(hid_t fapl, hbool_t new_format) { - hid_t fid = -1; /* File ID */ - hid_t gid = -1; /* Group ID */ - hid_t tid = -1; /* Type ID */ - hid_t sid = -1, did = -1; /* Dataspace and dataset IDs */ - H5L_info_t li; /* Link information */ - char filename[NAME_BUF_SIZE]; + hid_t fid = -1; /* File ID */ + hid_t gid = -1; /* Group ID */ + hid_t tid = -1; /* Type ID */ + hid_t sid = -1, did = -1; /* Dataspace and dataset IDs */ + H5L_info2_t li; /* Link information */ + char filename[NAME_BUF_SIZE]; if(new_format) TESTING("link type field in H5Lget_info (w/new group format)") @@ -8630,22 +12605,22 @@ linkinfo(hid_t fapl, hbool_t new_format) if(H5Dclose(did) < 0) TEST_ERROR /* Make sure that link type is correct when objects are queried */ - if(H5Lget_info(fid, "datatype", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "datatype", &li, H5P_DEFAULT) < 0) TEST_ERROR if(li.type != H5L_TYPE_HARD) TEST_ERROR - if(H5Lget_info(fid, "group", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "group", &li, H5P_DEFAULT) < 0) TEST_ERROR if(li.type != H5L_TYPE_HARD) TEST_ERROR - if(H5Lget_info(fid, "dataset", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "dataset", &li, H5P_DEFAULT) < 0) TEST_ERROR if(li.type != H5L_TYPE_HARD) TEST_ERROR - if(H5Lget_info(fid, "ext_link", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "ext_link", &li, H5P_DEFAULT) < 0) TEST_ERROR if(li.type != H5L_TYPE_EXTERNAL) TEST_ERROR - if(H5Lget_info(fid, "softlink", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "softlink", &li, H5P_DEFAULT) < 0) TEST_ERROR if(li.type != H5L_TYPE_SOFT) TEST_ERROR - if(H5Lget_info(fid, "ud_link", &li, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "ud_link", &li, H5P_DEFAULT) < 0) TEST_ERROR if(li.type != UD_PLIST_TYPE) TEST_ERROR /* Ensure that passing a NULL pointer doesn't cause an error */ - if(H5Lget_info(fid, "group", NULL, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid, "group", NULL, H5P_DEFAULT) < 0) TEST_ERROR if(H5Fclose(fid) < 0) TEST_ERROR @@ -8815,7 +12790,7 @@ error: *------------------------------------------------------------------------- */ static int -visit_link_cb(hid_t H5_ATTR_UNUSED group_id, const char *name, const H5L_info_t *linfo, void *_op_data) +visit_link_cb(hid_t H5_ATTR_UNUSED group_id, const char *name, const H5L_info2_t *linfo, void *_op_data) { lvisit_ud_t *op_data = (lvisit_ud_t *)_op_data; @@ -8857,26 +12832,26 @@ link_visit(hid_t fapl, hbool_t new_format) /* Visit all the links reachable from the root group (with file ID) */ udata.idx = 0; udata.info = lvisit0; - if(H5Lvisit(fid, H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata) < 0) FAIL_STACK_ERROR + if(H5Lvisit2(fid, H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata) < 0) FAIL_STACK_ERROR /* Visit all the links reachable from the root group (with group ID) */ if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = lvisit0; - if(H5Lvisit(gid, H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata) < 0) FAIL_STACK_ERROR + if(H5Lvisit2(gid, H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR /* Visit all the links reachable from each internal group */ if((gid = H5Gopen2(fid, "/Group1", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = lvisit1; - if(H5Lvisit(gid, H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata) < 0) FAIL_STACK_ERROR + if(H5Lvisit2(gid, H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR if((gid = H5Gopen2(fid, "/Group1/Group2", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = lvisit2; - if(H5Lvisit(gid, H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata) < 0) FAIL_STACK_ERROR + if(H5Lvisit2(gid, H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR /* Close file created */ @@ -8921,34 +12896,34 @@ link_visit_by_name(hid_t fapl, hbool_t new_format) /* Visit all the links reachable from the root group (with file ID) */ udata.idx = 0; udata.info = lvisit0; - if(H5Lvisit_by_name(fid, "/", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lvisit_by_name2(fid, "/", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Visit all the links reachable from the root group (with group ID) */ if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = lvisit0; - if(H5Lvisit_by_name(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lvisit_by_name2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR /* Visit all the links reachable from each internal group */ udata.idx = 0; udata.info = lvisit1; - if(H5Lvisit_by_name(fid, "/Group1", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lvisit_by_name2(fid, "/Group1", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if((gid = H5Gopen2(fid, "/Group1", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = lvisit1; - if(H5Lvisit_by_name(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lvisit_by_name2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = lvisit2; - if(H5Lvisit_by_name(fid, "/Group1/Group2", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lvisit_by_name2(fid, "/Group1/Group2", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if((gid = H5Gopen2(fid, "/Group1/Group2", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = lvisit2; - if(H5Lvisit_by_name(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Lvisit_by_name2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_link_cb, &udata, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR /* Close file created */ @@ -8976,7 +12951,7 @@ error: *------------------------------------------------------------------------- */ static int -visit_obj_cb(hid_t H5_ATTR_UNUSED group_id, const char *name, const H5O_info_t *oinfo, void *_op_data) +visit_obj_cb(hid_t H5_ATTR_UNUSED group_id, const char *name, const H5O_info2_t *oinfo, void *_op_data) { ovisit_ud_t *op_data = (ovisit_ud_t *)_op_data; @@ -9018,26 +12993,26 @@ obj_visit(hid_t fapl, hbool_t new_format) /* Visit all the objects reachable from the root group (with file ID) */ udata.idx = 0; udata.info = new_format ? ovisit0_new : ovisit0_old; - if(H5Ovisit2(fid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR + if(H5Ovisit3(fid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR /* Visit all the objects reachable from the root group (with group ID) */ if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit0_new : ovisit0_old; - if(H5Ovisit2(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR + if(H5Ovisit3(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR /* Visit all the objects reachable from each internal group */ if((gid = H5Gopen2(fid, "/Group1", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit1_new : ovisit1_old; - if(H5Ovisit2(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR + if(H5Ovisit3(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR if((gid = H5Gopen2(fid, "/Group1/Group2", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit2_new : ovisit2_old; - if(H5Ovisit2(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR + if(H5Ovisit3(gid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR /* Close file created */ @@ -9082,34 +13057,34 @@ obj_visit_by_name(hid_t fapl, hbool_t new_format) /* Visit all the objects reachable from the root group (with file ID) */ udata.idx = 0; udata.info = new_format ? ovisit0_new : ovisit0_old; - if(H5Ovisit_by_name2(fid, "/", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name3(fid, "/", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Visit all the objects reachable from the root group (with group ID) */ if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit0_new : ovisit0_old; - if(H5Ovisit_by_name2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name3(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR /* Visit all the objects reachable from each internal group */ udata.idx = 0; udata.info = new_format ? ovisit1_new : ovisit1_old; - if(H5Ovisit_by_name2(fid, "/Group1", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name3(fid, "/Group1", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if((gid = H5Gopen2(fid, "/Group1", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit1_new : ovisit1_old; - if(H5Ovisit_by_name2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name3(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit2_new : ovisit2_old; - if(H5Ovisit_by_name2(fid, "/Group1/Group2", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name3(fid, "/Group1/Group2", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if((gid = H5Gopen2(fid, "/Group1/Group2", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR udata.idx = 0; udata.info = new_format ? ovisit2_new : ovisit2_old; - if(H5Ovisit_by_name2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Ovisit_by_name3(gid, ".", H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Gclose(gid) < 0) FAIL_STACK_ERROR /* Close file created */ @@ -9136,7 +13111,7 @@ error: *------------------------------------------------------------------------- */ static int -visit_obj_stop_cb(hid_t H5_ATTR_UNUSED group_id, const char H5_ATTR_UNUSED *name, const H5O_info_t H5_ATTR_UNUSED *oinfo, void *_op_data) +visit_obj_stop_cb(hid_t H5_ATTR_UNUSED group_id, const char H5_ATTR_UNUSED *name, const H5O_info2_t H5_ATTR_UNUSED *oinfo, void *_op_data) { unsigned *op_data = (unsigned *)_op_data; @@ -9176,14 +13151,14 @@ obj_visit_stop(hid_t fapl, hbool_t new_format) * returns H5_ITER_STOP */ nvisited = 0; - if((ret = H5Ovisit2(fid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_stop_cb, &nvisited, H5O_INFO_BASIC)) < 0) + if((ret = H5Ovisit3(fid, H5_INDEX_NAME, H5_ITER_INC, visit_obj_stop_cb, &nvisited, H5O_INFO_BASIC)) < 0) FAIL_STACK_ERROR if(ret != H5_ITER_STOP) TEST_ERROR if(nvisited != 1) TEST_ERROR /* Same test with H5Ovisit_by_name */ nvisited = 0; - if((ret = H5Ovisit_by_name2(fid, "/", H5_INDEX_NAME, H5_ITER_INC, visit_obj_stop_cb, + if((ret = H5Ovisit_by_name3(fid, "/", H5_INDEX_NAME, H5_ITER_INC, visit_obj_stop_cb, &nvisited, H5O_INFO_BASIC, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR if(ret != H5_ITER_STOP) TEST_ERROR if(nvisited != 1) TEST_ERROR @@ -9977,11 +13952,11 @@ corder_create_compact(hid_t fapl) /* Loop through links, checking their creation order values */ /* (the name index is used, but the creation order value is in the same order) */ for(u = 0; u < max_compact; u++) { - H5L_info_t linfo; /* Link information */ + H5L_info2_t linfo; /* Link information */ /* Retrieve information for link */ HDsnprintf(objname, sizeof(objname), "filler %u", u); - if(H5Lget_info(group_id, objname, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(group_id, objname, &linfo, H5P_DEFAULT) < 0) TEST_ERROR /* Verify creation order of link */ if(linfo.corder_valid != TRUE) TEST_ERROR @@ -10105,11 +14080,11 @@ corder_create_dense(hid_t fapl) /* Loop through links, checking their creation order values */ /* (the name index is used, but the creation order value is in the same order) */ for(u = 0; u < (max_compact + 1); u++) { - H5L_info_t linfo; /* Link information */ + H5L_info2_t linfo; /* Link information */ /* Retrieve information for link */ HDsnprintf(objname, sizeof(objname), "filler %u", u); - if(H5Lget_info(group_id, objname, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(group_id, objname, &linfo, H5P_DEFAULT) < 0) TEST_ERROR /* Verify creation order of link */ if(linfo.corder_valid != TRUE) TEST_ERROR @@ -10503,19 +14478,19 @@ link_info_by_idx_check(hid_t group_id, const char *linkname, hsize_t n, char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ char valname[NAME_BUF_SIZE]; /* Link value name */ char tmpval[NAME_BUF_SIZE]; /* Temporary link value */ - H5L_info_t linfo; /* Link info struct */ + H5L_info2_t linfo; /* Link info struct */ /* Make link value for increasing/native order queries */ HDsnprintf(valname, sizeof(valname), "value %02u", (unsigned)n); /* Verify the link information for first link, in increasing creation order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder != 0) TEST_ERROR /* Verify the link information for new link, in increasing creation order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder != (int64_t)n) TEST_ERROR /* Verify value for new soft link, in increasing creation order */ @@ -10537,12 +14512,12 @@ link_info_by_idx_check(hid_t group_id, const char *linkname, hsize_t n, if(use_index) { /* Verify the link information for first link, in native creation order (which is increasing) */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_NATIVE, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_NATIVE, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder != 0) TEST_ERROR /* Verify the link information for new link, in native creation order (which is increasing) */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_NATIVE, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_NATIVE, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder != (int64_t)n) TEST_ERROR /* Verify value for new soft link, in native creation order (which is increasing) */ @@ -10560,12 +14535,12 @@ link_info_by_idx_check(hid_t group_id, const char *linkname, hsize_t n, /* Verify the link information for first link, in decreasing creation order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder != 0) TEST_ERROR /* Verify the link information for new link, in decreasing creation order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder != (int64_t)n) TEST_ERROR /* Verify value for new soft link, in decreasing creation order */ @@ -10583,12 +14558,12 @@ link_info_by_idx_check(hid_t group_id, const char *linkname, hsize_t n, /* Verify the link information for first link, in increasing link name order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder != 0) TEST_ERROR /* Verify the link information for new link, in increasing link name order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder != (int64_t)n) TEST_ERROR /* Verify value for new soft link, in increasing link name order */ @@ -10609,12 +14584,12 @@ link_info_by_idx_check(hid_t group_id, const char *linkname, hsize_t n, /* Verify the link information for first link, in decreasing link name order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, n, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder != 0) TEST_ERROR /* Verify the link information for new link, in decreasing link name order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.corder != (int64_t)n) TEST_ERROR /* Verify value for new soft link, in decreasing link name order */ @@ -10658,7 +14633,7 @@ link_info_by_idx(hid_t fapl) unsigned use_index; /* Use index on creation order values */ unsigned max_compact; /* Maximum # of links to store in group compactly */ unsigned min_dense; /* Minimum # of links to store in group "densely" */ - H5L_info_t linfo; /* Link info struct */ + H5L_info2_t linfo; /* Link info struct */ char objname[NAME_BUF_SIZE]; /* Object name */ char valname[NAME_BUF_SIZE]; /* Link value name */ char filename[NAME_BUF_SIZE];/* File name */ @@ -10702,7 +14677,7 @@ link_info_by_idx(hid_t fapl) /* Check for query on empty group */ H5E_BEGIN_TRY { - ret = H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, &linfo, H5P_DEFAULT); + ret = H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, &linfo, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR H5E_BEGIN_TRY { @@ -10740,11 +14715,11 @@ link_info_by_idx(hid_t fapl) /* Check for out of bound offset queries */ H5E_BEGIN_TRY { - ret = H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT); + ret = H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR H5E_BEGIN_TRY { - ret = H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)u, &linfo, H5P_DEFAULT); + ret = H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)u, &linfo, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR H5E_BEGIN_TRY { @@ -10782,11 +14757,11 @@ link_info_by_idx(hid_t fapl) /* Check for out of bound offset queries */ H5E_BEGIN_TRY { - ret = H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT); + ret = H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR H5E_BEGIN_TRY { - ret = H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)u, &linfo, H5P_DEFAULT); + ret = H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)u, &linfo, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR H5E_BEGIN_TRY { @@ -10832,19 +14807,22 @@ error: static int link_info_by_idx_old(hid_t fapl) { - hid_t file_id = -1; /* File ID */ - hid_t group_id = -1, group_id2 = -1; /* Group IDs */ - unsigned hard_link; /* Create hard or soft link? */ - H5L_info_t linfo; /* Link info struct */ - char objname[NAME_BUF_SIZE]; /* Object name */ - char valname[NAME_BUF_SIZE]; /* Link value name */ - char filename[NAME_BUF_SIZE];/* File name */ - haddr_t objno[CORDER_NLINKS]; /* Addresses of the objects created */ - char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ - char tmpval[NAME_BUF_SIZE]; /* Temporary link value */ - unsigned u; /* Local index variable */ - ssize_t name_len; /* Length of name */ - herr_t ret; /* Generic return value */ + hid_t file_id = -1; /* File ID */ + hid_t group_id = -1, group_id2 = -1; /* Group IDs */ + H5F_t *f = NULL; + unsigned hard_link; /* Create hard or soft link? */ + H5L_info2_t linfo; /* Link info struct */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char valname[NAME_BUF_SIZE]; /* Link value name */ + char filename[NAME_BUF_SIZE];/* File name */ + H5O_token_t objtoken[CORDER_NLINKS];/* Tokens (Addresses) of the objects created */ + void *vol_obj_file = NULL; /* Object of file_id */ + char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ + char tmpval[NAME_BUF_SIZE]; /* Temporary link value */ + unsigned u; /* Local index variable */ + ssize_t name_len; /* Length of name */ + int token_cmp; + herr_t ret; /* Generic return value */ /* Loop over creating hard or soft links */ for(hard_link = FALSE; hard_link <= TRUE; hard_link++) { @@ -10857,6 +14835,12 @@ link_info_by_idx_old(hid_t fapl) h5_fixname(FILENAME[0], fapl, filename, sizeof filename); if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + /* Need the file struct to address encoding */ + /* Retrieve VOL object */ + if(NULL == (vol_obj_file = H5VL_vol_object(file_id))) TEST_ERROR + /* Retrieve file from VOL object */ + if(NULL == (f = (H5F_t *)H5VL_object_data((const H5VL_object_t *)vol_obj_file))) TEST_ERROR + /* Create group to operate on */ if((group_id = H5Gcreate2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR @@ -10867,14 +14851,15 @@ link_info_by_idx_old(hid_t fapl) /* Check for creating hard or soft link */ if(hard_link) { - H5O_info_t oi; /* Buffer for querying object's info */ + H5O_info2_t oi; /* Buffer for querying object's info */ /* Create group */ if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR - /* Retrieve group's address on disk */ - if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR - objno[u] = oi.addr; + /* Retrieve group's object token */ + if(H5Oget_info3(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + + HDmemcpy(&objtoken[u], &oi.token, sizeof(H5O_token_t)); /* Close group */ if(H5Gclose(group_id2) < 0) TEST_ERROR @@ -10900,8 +14885,9 @@ link_info_by_idx_old(hid_t fapl) /* Verify link information (in increasing order) */ if(hard_link) { - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR - if(H5F_addr_ne(linfo.u.address, objno[u])) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Otoken_cmp(group_id, &linfo.u.token, &objtoken[u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end if */ else { if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)u, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR @@ -10915,8 +14901,9 @@ link_info_by_idx_old(hid_t fapl) /* Verify link information (in native order - native is increasing) */ if(hard_link) { - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_NATIVE, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR - if(H5F_addr_ne(linfo.u.address, objno[u])) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_NAME, H5_ITER_NATIVE, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Otoken_cmp(group_id, &linfo.u.token, &objtoken[u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end if */ else { if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_NATIVE, (hsize_t)u, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR @@ -10936,8 +14923,9 @@ link_info_by_idx_old(hid_t fapl) /* Verify link information (in decreasing order) */ if(hard_link) { - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR - if(H5F_addr_ne(linfo.u.address, objno[dec_u])) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Otoken_cmp(group_id, &linfo.u.token, &objtoken[dec_u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end if */ else { if(H5Lget_val_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_DEC, (hsize_t)u, tmpval, (size_t)NAME_BUF_SIZE, H5P_DEFAULT) < 0) TEST_ERROR @@ -10951,7 +14939,7 @@ link_info_by_idx_old(hid_t fapl) /* Check for creation order index queries */ H5E_BEGIN_TRY { - ret = H5Lget_info_by_idx(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT); + ret = H5Lget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)u, &linfo, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR H5E_BEGIN_TRY { @@ -11003,7 +14991,7 @@ delete_by_idx(hid_t fapl) unsigned use_index; /* Use index on creation order values */ unsigned max_compact; /* Maximum # of links to store in group compactly */ unsigned min_dense; /* Minimum # of links to store in group "densely" */ - H5L_info_t linfo; /* Link info struct */ + H5L_info2_t linfo; /* Link info struct */ char objname[NAME_BUF_SIZE]; /* Object name */ char filename[NAME_BUF_SIZE];/* File name */ char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ @@ -11107,7 +15095,7 @@ delete_by_idx(hid_t fapl) /* Verify the link information for first link in appropriate order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", idx_type, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", idx_type, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(order == H5_ITER_INC) { if(linfo.corder != (u + 1)) TEST_ERROR } /* end if */ @@ -11163,7 +15151,7 @@ delete_by_idx(hid_t fapl) /* Verify the link information for first link in appropriate order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", idx_type, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", idx_type, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(order == H5_ITER_INC) { if(linfo.corder != (u + 1)) TEST_ERROR } /* end if */ @@ -11222,7 +15210,7 @@ delete_by_idx(hid_t fapl) /* Verify the link information for current link in appropriate order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", idx_type, order, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", idx_type, order, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(order == H5_ITER_INC) { if(linfo.corder != ((u * 2) + 1)) TEST_ERROR } /* end if */ @@ -11247,7 +15235,7 @@ delete_by_idx(hid_t fapl) /* Verify the link information for first link in appropriate order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", idx_type, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", idx_type, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(order == H5_ITER_INC) { if(linfo.corder != ((u * 2) + 3)) TEST_ERROR } /* end if */ @@ -11311,16 +15299,19 @@ error: static int delete_by_idx_old(hid_t fapl) { - hid_t file_id = -1; /* File ID */ - hid_t group_id = -1, group_id2 = -1; /* Group IDs */ - H5L_info_t linfo; /* Link info struct */ - H5_iter_order_t order; /* Order within in the index */ - char objname[NAME_BUF_SIZE]; /* Object name */ - char filename[NAME_BUF_SIZE];/* File name */ - haddr_t objno[CORDER_NLINKS]; /* Addresses of the objects created */ - char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ - unsigned u; /* Local index variable */ - herr_t ret; /* Generic return value */ + hid_t file_id = -1; /* File ID */ + hid_t group_id = -1, group_id2 = -1; /* Group IDs */ + H5F_t *f = NULL; + H5L_info2_t linfo; /* Link info struct */ + H5_iter_order_t order; /* Order within in the index */ + void *vol_obj_file = NULL; /* Object of file_id */ + char objname[NAME_BUF_SIZE]; /* Object name */ + char filename[NAME_BUF_SIZE];/* File name */ + H5O_token_t objtoken[CORDER_NLINKS];/* Tokens (Addresses) of the objects created */ + char tmpname[NAME_BUF_SIZE]; /* Temporary link name */ + unsigned u; /* Local index variable */ + int token_cmp; + herr_t ret; /* Generic return value */ /* Loop over operating in different orders */ for(order = H5_ITER_INC; order <=H5_ITER_DEC; order++) { @@ -11334,6 +15325,12 @@ delete_by_idx_old(hid_t fapl) h5_fixname(FILENAME[0], fapl, filename, sizeof filename); if((file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR + /* Need the file struct to address encoding */ + /* Retrieve VOL object */ + if(NULL == (vol_obj_file = H5VL_vol_object(file_id))) TEST_ERROR + /* Retrieve file from VOL object */ + if(NULL == (f = (H5F_t *)H5VL_object_data((const H5VL_object_t *)vol_obj_file))) TEST_ERROR + /* Create group to operate on */ if((group_id = H5Gcreate2(file_id, CORDER_GROUP_NAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR @@ -11347,7 +15344,7 @@ delete_by_idx_old(hid_t fapl) /* Create several links */ for(u = 0; u < CORDER_NLINKS; u++) { - H5O_info_t oi; /* Buffer for querying object's info */ + H5O_info2_t oi; /* Buffer for querying object's info */ /* Make name for link */ HDsnprintf(objname, sizeof(objname), "filler %02u", u); @@ -11355,9 +15352,10 @@ delete_by_idx_old(hid_t fapl) /* Create group */ if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR - /* Retrieve group's address on disk */ - if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR - objno[u] = oi.addr; + /* Retrieve group's object token */ + if(H5Oget_info3(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + + HDmemcpy(&objtoken[u], &oi.token, sizeof(H5O_token_t)); /* Close group */ if(H5Gclose(group_id2) < 0) TEST_ERROR @@ -11384,12 +15382,14 @@ delete_by_idx_old(hid_t fapl) /* Verify the link information for first link in appropriate order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(order == H5_ITER_INC) { - if(H5F_addr_ne(linfo.u.address, objno[u + 1])) TEST_ERROR + if(H5Otoken_cmp(group_id, &linfo.u.token, &objtoken[u + 1], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end if */ else { - if(H5F_addr_ne(linfo.u.address, objno[dec_u])) TEST_ERROR + if(H5Otoken_cmp(group_id, &linfo.u.token, &objtoken[dec_u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end else */ /* Verify the name for first link in appropriate order */ @@ -11418,7 +15418,7 @@ delete_by_idx_old(hid_t fapl) /* Create several links */ for(u = 0; u < CORDER_NLINKS; u++) { - H5O_info_t oi; /* Buffer for querying object's info */ + H5O_info2_t oi; /* Buffer for querying object's info */ /* Make name for link */ HDsnprintf(objname, sizeof(objname), "filler %02u", u); @@ -11426,9 +15426,10 @@ delete_by_idx_old(hid_t fapl) /* Create group */ if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR - /* Retrieve group's address on disk */ - if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR - objno[u] = oi.addr; + /* Retrieve group's object token */ + if(H5Oget_info3(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + + HDmemcpy(&objtoken[u], &oi.token, sizeof(H5O_token_t)); /* Close group */ if(H5Gclose(group_id2) < 0) TEST_ERROR @@ -11443,12 +15444,14 @@ delete_by_idx_old(hid_t fapl) /* Verify the link information for current link in appropriate order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(order == H5_ITER_INC) { - if(H5F_addr_ne(linfo.u.address, objno[(u * 2) + 1])) TEST_ERROR + if(H5Otoken_cmp(group_id, &linfo.u.token, &objtoken[(u * 2) + 1], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end if */ else { - if(H5F_addr_ne(linfo.u.address, objno[dec_u])) TEST_ERROR + if(H5Otoken_cmp(group_id, &linfo.u.token, &objtoken[dec_u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end else */ /* Verify the name for current link in appropriate order */ @@ -11470,12 +15473,14 @@ delete_by_idx_old(hid_t fapl) /* Verify the link information for first link in appropriate order */ HDmemset(&linfo, 0, sizeof(linfo)); - if(H5Lget_info_by_idx(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(order == H5_ITER_INC) { - if(H5F_addr_ne(linfo.u.address, objno[(u * 2) + 3])) TEST_ERROR + if(H5Otoken_cmp(group_id, &linfo.u.token, &objtoken[(u * 2) + 3], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end if */ else { - if(H5F_addr_ne(linfo.u.address, objno[dec_u])) TEST_ERROR + if(H5Otoken_cmp(group_id, &linfo.u.token, &objtoken[dec_u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end else */ /* Verify the name for first link in appropriate order */ @@ -11525,22 +15530,24 @@ error: *------------------------------------------------------------------------- */ static int -link_iterate_cb(hid_t group_id, const char *link_name, const H5L_info_t *info, +link_iterate_cb(hid_t group_id, const char *link_name, const H5L_info2_t *info, void *_op_data) { link_iter_info_t *op_data = (link_iter_info_t *)_op_data; /* User data */ char objname[NAME_BUF_SIZE]; /* Object name */ - H5L_info_t my_info; /* Local link info */ + H5L_info2_t my_info; /* Local link info */ /* Increment # of times the callback was called */ op_data->ncalled++; /* Get the link information directly to compare */ - if(H5Lget_info(group_id, link_name, &my_info, H5P_DEFAULT) < 0) + if(H5Lget_info2(group_id, link_name, &my_info, H5P_DEFAULT) < 0) return H5_ITER_ERROR; /* Check more things for link iteration (vs. group iteration) */ if(info) { + int token_cmp; + /* Check for correct order of iteration */ /* (if we are operating in increasing or decreasing order) */ if(op_data->order != H5_ITER_NATIVE) @@ -11556,7 +15563,9 @@ link_iterate_cb(hid_t group_id, const char *link_name, const H5L_info_t *info, return H5_ITER_ERROR; if(info->cset != my_info.cset) return H5_ITER_ERROR; - if(H5F_addr_ne(info->u.address, my_info.u.address)) + if(H5Otoken_cmp(group_id, &info->u.token, &my_info.u.token, &token_cmp) < 0) + return H5_ITER_ERROR; + if(token_cmp) return H5_ITER_ERROR; } /* end if */ @@ -11618,7 +15627,7 @@ group_iterate_cb(hid_t group_id, const char *link_name, void *_op_data) */ static int link_iterate_fail_cb(hid_t H5_ATTR_UNUSED group_id, const char H5_ATTR_UNUSED *link_name, - const H5L_info_t H5_ATTR_UNUSED *info, void H5_ATTR_UNUSED *_op_data) + const H5L_info2_t H5_ATTR_UNUSED *info, void H5_ATTR_UNUSED *_op_data) { return H5_ITER_ERROR; } /* end link_iterate_fail_cb() */ @@ -11651,7 +15660,7 @@ link_iterate_check(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, iter_info->ncalled = 0; iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); - if(H5Literate(group_id, idx_type, order, &skip, link_iterate_cb, iter_info) < 0) TEST_ERROR + if(H5Literate2(group_id, idx_type, order, &skip, link_iterate_cb, iter_info) < 0) TEST_ERROR /* Verify that we visited all the links */ if(skip != max_links) TEST_ERROR @@ -11681,7 +15690,7 @@ link_iterate_check(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, iter_info->ncalled = 0; iter_info->curr = (int64_t)(order != H5_ITER_DEC ? skip : ((max_links - 1) - skip)); HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); - if(H5Literate(group_id, idx_type, order, &skip, link_iterate_cb, iter_info) < 0) TEST_ERROR + if(H5Literate2(group_id, idx_type, order, &skip, link_iterate_cb, iter_info) < 0) TEST_ERROR /* Verify that we visited all the links */ if(skip != max_links) TEST_ERROR @@ -11743,7 +15752,7 @@ link_iterate_check(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, iter_info->ncalled = 0; iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); - if((ret = H5Literate(group_id, idx_type, order, &skip, link_iterate_cb, iter_info)) < 0) TEST_ERROR + if((ret = H5Literate2(group_id, idx_type, order, &skip, link_iterate_cb, iter_info)) < 0) TEST_ERROR if(ret != CORDER_ITER_STOP) TEST_ERROR if(iter_info->ncalled != 3) TEST_ERROR @@ -11763,7 +15772,7 @@ link_iterate_check(hid_t group_id, H5_index_t idx_type, H5_iter_order_t order, /* Check for iteration routine indicating failure */ skip = 0; H5E_BEGIN_TRY { - ret = H5Literate(group_id, idx_type, order, &skip, link_iterate_fail_cb, NULL); + ret = H5Literate2(group_id, idx_type, order, &skip, link_iterate_fail_cb, NULL); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -11881,7 +15890,7 @@ link_iterate(hid_t fapl) /* Check for iteration on empty group */ /* (should be OK) */ - if(H5Literate(group_id, idx_type, order, NULL, link_iterate_cb, NULL) < 0) TEST_ERROR + if(H5Literate2(group_id, idx_type, order, NULL, link_iterate_cb, NULL) < 0) TEST_ERROR /* Create several links, up to limit of compact form */ for(u = 0; u < max_compact; u++) { @@ -11901,7 +15910,7 @@ link_iterate(hid_t fapl) /* Check for out of bound iteration on compact group */ skip = (hsize_t)u; H5E_BEGIN_TRY { - ret = H5Literate(group_id, idx_type, order, &skip, link_iterate_cb, NULL); + ret = H5Literate2(group_id, idx_type, order, &skip, link_iterate_cb, NULL); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -11926,7 +15935,7 @@ link_iterate(hid_t fapl) /* Check for out of bound iteration on dense group */ skip = (hsize_t)u; H5E_BEGIN_TRY { - ret = H5Literate(group_id, idx_type, order, &skip, link_iterate_cb, NULL); + ret = H5Literate2(group_id, idx_type, order, &skip, link_iterate_cb, NULL); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -11979,21 +15988,23 @@ error: *------------------------------------------------------------------------- */ static int -link_iterate_old_cb(hid_t group_id, const char *link_name, const H5L_info_t *info, void *_op_data) +link_iterate_old_cb(hid_t group_id, const char *link_name, const H5L_info2_t *info, void *_op_data) { link_iter_info_t *op_data = (link_iter_info_t *)_op_data; /* User data */ char objname[NAME_BUF_SIZE]; /* Object name */ - H5L_info_t my_info; /* Local link info */ + H5L_info2_t my_info; /* Local link info */ /* Increment # of times the callback was called */ op_data->ncalled++; /* Get the link information directly to compare */ - if(H5Lget_info(group_id, link_name, &my_info, H5P_DEFAULT) < 0) + if(H5Lget_info2(group_id, link_name, &my_info, H5P_DEFAULT) < 0) return H5_ITER_ERROR; /* Check more things for link iteration (vs. group iteration) */ if(info) { + int token_cmp; + /* Compare link info structs */ if(info->type != my_info.type) return H5_ITER_ERROR; @@ -12003,7 +16014,9 @@ link_iterate_old_cb(hid_t group_id, const char *link_name, const H5L_info_t *inf return H5_ITER_ERROR; if(info->cset != my_info.cset) return H5_ITER_ERROR; - if(H5F_addr_ne(info->u.address, my_info.u.address)) + if(H5Otoken_cmp(group_id, &info->u.token, &my_info.u.token, &token_cmp) < 0) + return H5_ITER_ERROR; + if(token_cmp) return H5_ITER_ERROR; } /* end if */ @@ -12079,7 +16092,7 @@ link_iterate_old_check(hid_t group_id, H5_iter_order_t order, unsigned max_links iter_info->ncalled = 0; iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); - if(H5Literate(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_cb, iter_info) < 0) TEST_ERROR + if(H5Literate2(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_cb, iter_info) < 0) TEST_ERROR /* Verify that we visited all the links */ if(skip != max_links) TEST_ERROR @@ -12109,7 +16122,7 @@ link_iterate_old_check(hid_t group_id, H5_iter_order_t order, unsigned max_links iter_info->ncalled = 0; iter_info->curr = (int64_t)(order != H5_ITER_DEC ? skip : ((max_links - 1) - skip)); HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); - if(H5Literate(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_cb, iter_info) < 0) TEST_ERROR + if(H5Literate2(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_cb, iter_info) < 0) TEST_ERROR /* Verify that we visited all the links */ if(skip != max_links) TEST_ERROR @@ -12171,7 +16184,7 @@ link_iterate_old_check(hid_t group_id, H5_iter_order_t order, unsigned max_links iter_info->ncalled = 0; iter_info->curr = order != H5_ITER_DEC ? 0 : (max_links - 1); HDmemset(iter_info->visited, 0, sizeof(hbool_t) * iter_info->max_visit); - if((ret = H5Literate(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_cb, iter_info)) < 0) TEST_ERROR + if((ret = H5Literate2(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_cb, iter_info)) < 0) TEST_ERROR if(ret != CORDER_ITER_STOP) TEST_ERROR if(iter_info->ncalled != 3) TEST_ERROR @@ -12191,14 +16204,14 @@ link_iterate_old_check(hid_t group_id, H5_iter_order_t order, unsigned max_links /* Check for iteration routine indicating failure */ skip = 0; H5E_BEGIN_TRY { - ret = H5Literate(group_id, H5_INDEX_NAME, order, &skip, link_iterate_fail_cb, NULL); + ret = H5Literate2(group_id, H5_INDEX_NAME, order, &skip, link_iterate_fail_cb, NULL); } H5E_END_TRY; if(ret >= 0) TEST_ERROR /* Check for iteration w/bad location ID */ skip = 0; H5E_BEGIN_TRY { - ret = H5Literate((hid_t)(-1), H5_INDEX_NAME, order, &skip, link_iterate_fail_cb, NULL); + ret = H5Literate2((hid_t)(-1), H5_INDEX_NAME, order, &skip, link_iterate_fail_cb, NULL); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -12268,7 +16281,7 @@ link_iterate_old(hid_t fapl) /* Check for iteration on empty group */ /* (should be OK) */ - if(H5Literate(group_id, H5_INDEX_NAME, order, NULL, link_iterate_old_cb, NULL) < 0) TEST_ERROR + if(H5Literate2(group_id, H5_INDEX_NAME, order, NULL, link_iterate_old_cb, NULL) < 0) TEST_ERROR /* Create several links */ for(u = 0; u < CORDER_NLINKS; u++) { @@ -12288,7 +16301,7 @@ link_iterate_old(hid_t fapl) /* Check for out of bound iteration on old-style group */ skip = (hsize_t)u; H5E_BEGIN_TRY { - ret = H5Literate(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_cb, NULL); + ret = H5Literate2(group_id, H5_INDEX_NAME, order, &skip, link_iterate_old_cb, NULL); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -12296,7 +16309,7 @@ link_iterate_old(hid_t fapl) /* (should fail) */ skip = (hsize_t)0; H5E_BEGIN_TRY { - ret = H5Literate(group_id, H5_INDEX_CRT_ORDER, order, &skip, link_iterate_old_cb, NULL); + ret = H5Literate2(group_id, H5_INDEX_CRT_ORDER, order, &skip, link_iterate_old_cb, NULL); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -12343,15 +16356,16 @@ error: */ static int open_by_idx_check(hid_t main_group_id, hid_t soft_group_id, hid_t mount_file_id, - H5_index_t idx_type, H5_iter_order_t order, unsigned max_links, haddr_t *objno) + H5_index_t idx_type, H5_iter_order_t order, unsigned max_links, H5O_token_t *objno) { char mntname[NAME_BUF_SIZE]; /* Link value */ hid_t group_id = -1; /* ID of group to test */ - H5O_info_t oi; /* Buffer for querying object's info */ - haddr_t mnt_root_addr; /* Address of root group in file to mount */ + H5O_info2_t oi; /* Buffer for querying object's info */ + H5O_token_t mnt_root_token; /* Token (address) of root group in file to mount */ hid_t obj_id; /* ID of object opened */ unsigned mnt_idx; /* Index to mount group on */ unsigned u, v; /* Local index variables */ + int token_cmp; /* Work through main & soft link groups */ for(v = 0; v < 2; v++) { @@ -12367,16 +16381,18 @@ open_by_idx_check(hid_t main_group_id, hid_t soft_group_id, hid_t mount_file_id, if((obj_id = H5Oopen_by_idx(group_id, ".", idx_type, order, (hsize_t)u, H5P_DEFAULT)) < 0) TEST_ERROR /* Get the object's information */ - if(H5Oget_info2(obj_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Oget_info3(obj_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR /* Check that the object is the correct one */ if(order == H5_ITER_INC) { - if(H5F_addr_ne(oi.addr, objno[u])) TEST_ERROR + if(H5Otoken_cmp(obj_id, &oi.token, &objno[u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end if */ else if(order == H5_ITER_DEC) { unsigned dec_u = max_links - (u + 1); /* Decreasing mapped index */ - if(H5F_addr_ne(oi.addr, objno[dec_u])) TEST_ERROR + if(H5Otoken_cmp(obj_id, &oi.token, &objno[dec_u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR } /* end if */ else { /* XXX: What to do about native order? */ @@ -12390,8 +16406,9 @@ open_by_idx_check(hid_t main_group_id, hid_t soft_group_id, hid_t mount_file_id, /* Verify opening correct object by index when file mounting is present */ /* Get the address of the root group in the file to mount */ - if(H5Oget_info2(mount_file_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR - mnt_root_addr = oi.addr; + if(H5Oget_info3(mount_file_id, &oi, H5O_INFO_BASIC) < 0) + TEST_ERROR + HDmemcpy(&mnt_root_token, &oi.token, sizeof(mnt_root_token)); /* Mount a file over a group in main group */ mnt_idx = 2; @@ -12402,11 +16419,13 @@ open_by_idx_check(hid_t main_group_id, hid_t soft_group_id, hid_t mount_file_id, if((obj_id = H5Oopen_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)mnt_idx, H5P_DEFAULT)) < 0) TEST_ERROR /* Get the object's information */ - if(H5Oget_info2(obj_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Oget_info3(obj_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR /* Check that the object is the root of the mounted file and not in the previous file */ - if(H5F_addr_ne(oi.addr, mnt_root_addr)) TEST_ERROR - if(H5F_addr_eq(oi.addr, objno[mnt_idx])) TEST_ERROR + if(H5Otoken_cmp(obj_id, &oi.token, &mnt_root_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR + if(H5Otoken_cmp(obj_id, &oi.token, &objno[mnt_idx], &token_cmp) < 0) TEST_ERROR + if(!token_cmp) TEST_ERROR /* Close object */ if(H5Oclose(obj_id) < 0) TEST_ERROR @@ -12445,11 +16464,11 @@ open_by_idx(hid_t fapl) unsigned use_index; /* Use index on creation order values */ unsigned max_compact; /* Maximum # of links to store in group compactly */ unsigned min_dense; /* Minimum # of links to store in group "densely" */ - H5O_info_t oi; /* Buffer for querying object's info */ + H5O_info2_t oi; /* Buffer for querying object's info */ char filename[NAME_BUF_SIZE];/* File name */ char objname[NAME_BUF_SIZE]; /* Object name */ char valname[2 * NAME_BUF_SIZE]; /* Link value */ - haddr_t *objno = NULL; /* Addresses of the objects created */ + H5O_token_t *objno = NULL; /* Tokens (addresses) of the objects created */ unsigned u; /* Local index variable */ hid_t ret; /* Generic return value */ @@ -12459,8 +16478,8 @@ open_by_idx(hid_t fapl) /* Query the group creation properties */ if(H5Pget_link_phase_change(gcpl_id, &max_compact, &min_dense) < 0) TEST_ERROR - /* Allocate object address array */ - if(NULL == (objno = (haddr_t *)HDmalloc(sizeof(haddr_t) * (max_compact * 2)))) TEST_ERROR + /* Allocate object token array */ + if(NULL == (objno = (H5O_token_t *)HDmalloc(sizeof(H5O_token_t) * (max_compact * 2)))) TEST_ERROR /* Create file to mount */ h5_fixname(FILENAME[1], fapl, filename, sizeof filename); @@ -12546,8 +16565,8 @@ open_by_idx(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR - objno[u] = oi.addr; + if(H5Oget_info3(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + objno[u] = oi.token; /* Close group created */ if(H5Gclose(group_id2) < 0) TEST_ERROR @@ -12555,7 +16574,7 @@ open_by_idx(hid_t fapl) /* Create soft link in another group, to objects in main group */ HDsnprintf(valname, sizeof(valname), "/%s/%s", CORDER_GROUP_NAME, objname); if(H5Lcreate_soft(valname, soft_group_id, objname, H5P_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR - } /* end for */ + } /* Verify state of group (compact) */ if(H5G__has_links_test(group_id, NULL) != TRUE) TEST_ERROR @@ -12580,8 +16599,8 @@ open_by_idx(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR - objno[u] = oi.addr; + if(H5Oget_info3(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + objno[u] = oi.token; /* Close group created */ if(H5Gclose(group_id2) < 0) TEST_ERROR @@ -12645,6 +16664,100 @@ error: /*------------------------------------------------------------------------- + * Function: open_by_idx_check_old + * + * Purpose: Check opening by index in a group + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +open_by_idx_check_old(hid_t main_group_id, hid_t soft_group_id, hid_t mount_file_id, + H5_index_t idx_type, H5_iter_order_t order, unsigned max_links, H5O_token_t *objno) +{ + char mntname[NAME_BUF_SIZE]; /* Link value */ + hid_t group_id = -1; /* ID of group to test */ + H5O_info2_t oi; /* Buffer for querying object's info */ + H5O_token_t mnt_root_token; /* Token of root group in file to mount */ + hid_t obj_id; /* ID of object opened */ + unsigned mnt_idx; /* Index to mount group on */ + unsigned u, v; /* Local index variables */ + int cmp_value; /* Token comparison value */ + + /* Work through main & soft link groups */ + for(v = 0; v < 2; v++) { + /* Choose appropriate group to open links within */ + if(0 == v) + group_id = main_group_id; + else + group_id = soft_group_id; + + /* Open each object in main group by index and check that it's the correct one */ + for(u = 0; u < max_links; u++) { + /* Open the object */ + if((obj_id = H5Oopen_by_idx(group_id, ".", idx_type, order, (hsize_t)u, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Get the object's information */ + if(H5Oget_info3(obj_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + + /* Check that the object is the correct one */ + if(order == H5_ITER_INC) { + if(H5Otoken_cmp(group_id, &oi.token, &objno[u], &cmp_value) < 0) TEST_ERROR + if(0 != cmp_value) TEST_ERROR + } /* end if */ + else if(order == H5_ITER_DEC) { + unsigned dec_u = max_links - (u + 1); /* Decreasing mapped index */ + + if(H5Otoken_cmp(group_id, &oi.token, &objno[dec_u], &cmp_value) < 0) TEST_ERROR + if(0 != cmp_value) TEST_ERROR + } /* end if */ + else { + /* XXX: What to do about native order? */ + } /* end else */ + + /* Close object */ + if(H5Oclose(obj_id) < 0) TEST_ERROR + } /* end for */ + } /* end for */ + + /* Verify opening correct object by index when file mounting is present */ + + /* Get the address of the root group in the file to mount */ + if(H5Oget_info3(mount_file_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + mnt_root_token = oi.token; + + /* Mount a file over a group in main group */ + mnt_idx = 2; + HDsnprintf(mntname, sizeof(mntname), "/%s/filler %02u", CORDER_GROUP_NAME, mnt_idx); + if(H5Fmount(main_group_id, mntname, mount_file_id, H5P_DEFAULT) < 0) TEST_ERROR + + /* Open the object that the file is mounted on */ + if((obj_id = H5Oopen_by_idx(group_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)mnt_idx, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Get the object's information */ + if(H5Oget_info3(obj_id, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + + /* Check that the object is the root of the mounted file and not in the previous file */ + if(H5Otoken_cmp(group_id, &oi.token, &mnt_root_token, &cmp_value) < 0) TEST_ERROR + if(0 != cmp_value) TEST_ERROR + if(H5Otoken_cmp(group_id, &oi.token, &objno[mnt_idx], &cmp_value) < 0) TEST_ERROR + if(0 == cmp_value) TEST_ERROR + + /* Close object */ + if(H5Oclose(obj_id) < 0) TEST_ERROR + + /* Unmount the file */ + if(H5Funmount(main_group_id, mntname) < 0) TEST_ERROR + + /* Success */ + return SUCCEED; + +error: + return FAIL; +} /* end open_by_idx_check_old() */ + +/*------------------------------------------------------------------------- * Function: open_by_idx_old * * Purpose: Create an old-style group and test opening @@ -12662,11 +16775,11 @@ open_by_idx_old(hid_t fapl) hid_t group_id = -1; /* Group ID */ hid_t soft_group_id = -1; /* Group ID for soft links */ H5_iter_order_t order; /* Order within in the index */ - H5O_info_t oi; /* Buffer for querying object's info */ + H5O_info2_t oi; /* Buffer for querying object's info */ char filename[NAME_BUF_SIZE];/* File name */ char objname[NAME_BUF_SIZE]; /* Object name */ char valname[2 * NAME_BUF_SIZE]; /* Link value */ - haddr_t objno[CORDER_NLINKS]; /* Addresses of the objects created */ + H5O_token_t objno[CORDER_NLINKS]; /* Tokens for the objects created */ unsigned u; /* Local index variable */ hid_t ret; /* Generic return value */ @@ -12716,8 +16829,8 @@ open_by_idx_old(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info2(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR - objno[u] = oi.addr; + if(H5Oget_info3(group_id2, &oi, H5O_INFO_BASIC) < 0) TEST_ERROR + objno[u] = oi.token; /* Close group created */ if(H5Gclose(group_id2) < 0) TEST_ERROR @@ -12743,7 +16856,7 @@ open_by_idx_old(hid_t fapl) if(ret >= 0) TEST_ERROR /* Verify opening objects by index */ - if(open_by_idx_check(group_id, soft_group_id, mount_file_id, H5_INDEX_NAME, order, u, objno) < 0) TEST_ERROR + if(open_by_idx_check_old(group_id, soft_group_id, mount_file_id, H5_INDEX_NAME, order, u, objno) < 0) TEST_ERROR /* Close the groups */ if(H5Gclose(group_id) < 0) TEST_ERROR @@ -12784,12 +16897,13 @@ error: */ static int object_info_check(hid_t main_group_id, hid_t soft_group_id, H5_index_t idx_type, - H5_iter_order_t order, unsigned max_links, haddr_t *objno) + H5_iter_order_t order, unsigned max_links, H5O_token_t *objno) { char objname[NAME_BUF_SIZE]; /* Object name */ hid_t group_id = -1; /* ID of group to test */ - H5O_info_t oinfo; /* Buffer for querying object's info */ + H5O_info2_t oinfo; /* Buffer for querying object's info */ unsigned u, v; /* Local index variables */ + int token_cmp; /* Work through main & soft link groups */ for(v = 0; v < 2; v++) { @@ -12805,25 +16919,28 @@ object_info_check(hid_t main_group_id, hid_t soft_group_id, H5_index_t idx_type, HDsnprintf(objname, sizeof(objname), "filler %02u", u); /* Query the object's information, by name */ - if(H5Oget_info_by_name2(group_id, objname, &oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(group_id, objname, &oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS, H5P_DEFAULT) < 0) TEST_ERROR /* Check that the object is the correct one */ - if(H5F_addr_ne(oinfo.addr, objno[u])) TEST_ERROR - if(H5F_addr_ne(oinfo.num_attrs, u)) TEST_ERROR + if(H5Otoken_cmp(group_id, &oinfo.token, &objno[u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR + if(oinfo.num_attrs != u) TEST_ERROR /* Query the object's information, by index */ - if(H5Oget_info_by_idx2(group_id, ".", idx_type, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_idx3(group_id, ".", idx_type, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS, H5P_DEFAULT) < 0) TEST_ERROR /* Check that the object is the correct one */ if(order == H5_ITER_INC) { - if(H5F_addr_ne(oinfo.addr, objno[u])) TEST_ERROR - if(H5F_addr_ne(oinfo.num_attrs, u)) TEST_ERROR + if(H5Otoken_cmp(group_id, &oinfo.token, &objno[u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR + if(oinfo.num_attrs != u) TEST_ERROR } /* end if */ else if(order == H5_ITER_DEC) { unsigned dec_u = max_links - (u + 1); /* Decreasing mapped index */ - if(H5F_addr_ne(oinfo.addr, objno[dec_u])) TEST_ERROR - if(H5F_addr_ne(oinfo.num_attrs, dec_u)) TEST_ERROR + if(H5Otoken_cmp(group_id, &oinfo.token, &objno[dec_u], &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR + if(oinfo.num_attrs != dec_u) TEST_ERROR } /* end if */ else { /* XXX: What to do about native order? */ @@ -12863,12 +16980,12 @@ object_info(hid_t fapl) unsigned use_index; /* Use index on creation order values */ unsigned max_compact; /* Maximum # of links to store in group compactly */ unsigned min_dense; /* Minimum # of links to store in group "densely" */ - H5O_info_t oinfo; /* Buffer for querying object's info */ + H5O_info2_t oinfo; /* Buffer for querying object's info */ char filename[NAME_BUF_SIZE];/* File name */ char objname[NAME_BUF_SIZE]; /* Object name */ char valname[2 * NAME_BUF_SIZE]; /* Link value */ char attrname[NAME_BUF_SIZE]; /* Attribute name */ - haddr_t *objno = NULL; /* Addresses of the objects created */ + H5O_token_t *objno = NULL; /* Tokens (addresses) of the objects created */ herr_t ret; /* Generic return value */ unsigned u, v; /* Local index variables */ @@ -12878,8 +16995,8 @@ object_info(hid_t fapl) /* Query the group creation properties */ if(H5Pget_link_phase_change(gcpl_id, &max_compact, &min_dense) < 0) TEST_ERROR - /* Allocate object address array */ - if(NULL == (objno = (haddr_t *)HDmalloc(sizeof(haddr_t) * (max_compact * 2)))) TEST_ERROR + /* Allocate object token array */ + if(NULL == (objno = (H5O_token_t *)HDmalloc(sizeof(H5O_token_t) * (max_compact * 2)))) TEST_ERROR /* Create dataspace for attributes */ if((space_id = H5Screate(H5S_SCALAR)) < 0) TEST_ERROR @@ -12950,7 +17067,7 @@ object_info(hid_t fapl) /* Check for out of bound query by index on empty group */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret = H5Oget_info_by_idx3(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -12966,8 +17083,8 @@ object_info(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info2(group_id2, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - objno[u] = oinfo.addr; + if(H5Oget_info3(group_id2, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + objno[u] = oinfo.token; /* Create attributes on new object */ for(v = 0; v < u; v++) { @@ -12994,7 +17111,7 @@ object_info(hid_t fapl) /* Check for out of bound query by index */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret = H5Oget_info_by_idx3(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -13014,8 +17131,8 @@ object_info(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info2(group_id2, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - objno[u] = oinfo.addr; + if(H5Oget_info3(group_id2, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + objno[u] = oinfo.token; /* Create attributes on new object */ for(v = 0; v < u; v++) { @@ -13042,7 +17159,7 @@ object_info(hid_t fapl) /* Check for out of bound query by index */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret = H5Oget_info_by_idx3(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -13088,6 +17205,77 @@ error: /*------------------------------------------------------------------------- + * Function: object_info_check_old + * + * Purpose: Check querying object info in a group + * + * Return: Success: 0 + * Failure: -1 + *------------------------------------------------------------------------- + */ +static int +object_info_check_old(hid_t main_group_id, hid_t soft_group_id, H5_index_t idx_type, + H5_iter_order_t order, unsigned max_links, H5O_token_t *objno) +{ + char objname[NAME_BUF_SIZE]; /* Object name */ + hid_t group_id = -1; /* ID of group to test */ + H5O_info2_t oinfo; /* Buffer for querying object's info */ + unsigned u, v; /* Local index variables */ + + /* Work through main & soft link groups */ + for(v = 0; v < 2; v++) { + /* Choose appropriate group to open links within */ + if(0 == v) + group_id = main_group_id; + else + group_id = soft_group_id; + + /* Open each object in group by name and check that it's the correct one */ + for(u = 0; u < max_links; u++) { + int cmp_value; /* Token comparison value */ + + /* Make name for link */ + HDsnprintf(objname, sizeof(objname), "filler %02u", u); + + /* Query the object's information, by name */ + if(H5Oget_info_by_name3(group_id, objname, &oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS, H5P_DEFAULT) < 0) TEST_ERROR + + /* Check that the object is the correct one */ + if(H5Otoken_cmp(group_id, &oinfo.token, &objno[u], &cmp_value) < 0) TEST_ERROR + if(0 != cmp_value) TEST_ERROR + if(oinfo.num_attrs != u) TEST_ERROR + + /* Query the object's information, by index */ + if(H5Oget_info_by_idx3(group_id, ".", idx_type, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS, H5P_DEFAULT) < 0) TEST_ERROR + + /* Check that the object is the correct one */ + if(order == H5_ITER_INC) { + if(H5Otoken_cmp(group_id, &oinfo.token, &objno[u], &cmp_value) < 0) TEST_ERROR + if(0 != cmp_value) TEST_ERROR + if(oinfo.num_attrs != u) TEST_ERROR + } + else if(order == H5_ITER_DEC) { + unsigned dec_u = max_links - (u + 1); /* Decreasing mapped index */ + + if(H5Otoken_cmp(group_id, &oinfo.token, &objno[dec_u], &cmp_value) < 0) TEST_ERROR + if(0 != cmp_value) TEST_ERROR + if(oinfo.num_attrs != dec_u) TEST_ERROR + } + else { + /* XXX: What to do about native order? */ + } + + } /* end for */ + } /* end for */ + + /* Success */ + return SUCCEED; + +error: + return FAIL; +} /* end object_info_check_old() */ + +/*------------------------------------------------------------------------- * Function: object_info_old * * Purpose: Create an old-style group test querying object info. @@ -13104,12 +17292,12 @@ object_info_old(hid_t fapl) hid_t soft_group_id = -1; /* Group ID for soft links */ hid_t space_id = -1; /* Dataspace ID (for attributes) */ H5_iter_order_t order; /* Order within in the index */ - H5O_info_t oinfo; /* Buffer for querying object's info */ + H5O_info2_t oinfo; /* Buffer for querying object's info */ char filename[NAME_BUF_SIZE];/* File name */ char objname[NAME_BUF_SIZE]; /* Object name */ char valname[2 * NAME_BUF_SIZE]; /* Link value */ char attrname[NAME_BUF_SIZE]; /* Attribute name */ - haddr_t objno[CORDER_NLINKS]; /* Addresses of the objects created */ + H5O_token_t objno[CORDER_NLINKS]; /* Tokens for the objects created */ herr_t ret; /* Generic return value */ unsigned u, v; /* Local index variables */ @@ -13143,7 +17331,7 @@ object_info_old(hid_t fapl) /* Check for out of bound query by index on empty group */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret = H5Oget_info_by_idx3(group_id, ".", H5_INDEX_NAME, order, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR @@ -13159,8 +17347,8 @@ object_info_old(hid_t fapl) if((group_id2 = H5Gcreate2(group_id, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Retrieve group's address on disk */ - if(H5Oget_info2(group_id2, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - objno[u] = oinfo.addr; + if(H5Oget_info3(group_id2, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + objno[u] = oinfo.token; /* Create attributes on new object */ for(v = 0; v < u; v++) { @@ -13187,18 +17375,18 @@ object_info_old(hid_t fapl) /* Check for out of bound query by index */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret = H5Oget_info_by_idx3(group_id, ".", H5_INDEX_NAME, order, (hsize_t)u, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR /* Check for creation order index query */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_idx2(group_id, ".", H5_INDEX_CRT_ORDER, order, (hsize_t)(u - 1), &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret = H5Oget_info_by_idx3(group_id, ".", H5_INDEX_CRT_ORDER, order, (hsize_t)(u - 1), &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(ret >= 0) TEST_ERROR /* Verify querying objects by name */ - if(object_info_check(group_id, soft_group_id, H5_INDEX_NAME, order, u, objno) < 0) TEST_ERROR + if(object_info_check_old(group_id, soft_group_id, H5_INDEX_NAME, order, u, objno) < 0) TEST_ERROR /* Close the groups */ if(H5Gclose(group_id) < 0) TEST_ERROR @@ -13867,7 +18055,8 @@ timestamps(hid_t fapl) hid_t group_id2 = -1; /* Group ID */ hid_t gcpl_id = -1; /* Group creation property list ID */ hid_t gcpl_id2 = -1; /* Group creation property list ID */ - H5O_info_t oinfo, oinfo2; /* Object info for groups created */ + H5O_info2_t oinfo, oinfo2; /* Object info for groups created */ + H5O_native_info_t ninfo, ninfo2; /* Native info for groups created */ char filename[NAME_BUF_SIZE];/* File name */ hbool_t track_times; /* The object timestamp setting */ @@ -13916,10 +18105,15 @@ timestamps(hid_t fapl) if(track_times != TRUE) TEST_ERROR /* Query the object information for each group */ - if(H5Oget_info2(group_id, &oinfo, H5O_INFO_TIME|H5O_INFO_HDR) < 0) TEST_ERROR - if(H5Oget_info2(group_id2, &oinfo2, H5O_INFO_TIME|H5O_INFO_HDR) < 0) TEST_ERROR + /* Generic info */ + if(H5Oget_info3(group_id, &oinfo, H5O_INFO_TIME) < 0) TEST_ERROR + if(H5Oget_info3(group_id2, &oinfo2, H5O_INFO_TIME) < 0) TEST_ERROR + /* Native file format info */ + if(H5Oget_native_info(group_id, &ninfo, H5O_NATIVE_INFO_HDR) < 0) TEST_ERROR + if(H5Oget_native_info(group_id2, &ninfo2, H5O_NATIVE_INFO_HDR) < 0) TEST_ERROR /* Sanity check object information for each group */ + /* Generic info */ if(oinfo.atime != 0) TEST_ERROR if(oinfo.mtime != 0) TEST_ERROR if(oinfo.ctime != 0) TEST_ERROR @@ -13928,10 +18122,11 @@ timestamps(hid_t fapl) if(oinfo.mtime == oinfo2.mtime) TEST_ERROR if(oinfo.ctime == oinfo2.ctime) TEST_ERROR if(oinfo.btime == oinfo2.btime) TEST_ERROR - if((oinfo.hdr.flags & H5O_HDR_STORE_TIMES) != 0) TEST_ERROR - if((oinfo2.hdr.flags & H5O_HDR_STORE_TIMES) == 0) TEST_ERROR - if(oinfo.hdr.space.total >= oinfo2.hdr.space.total) TEST_ERROR - if(oinfo.hdr.space.meta >= oinfo2.hdr.space.meta) TEST_ERROR + /* Native file format info */ + if((ninfo.hdr.flags & H5O_HDR_STORE_TIMES) != 0) TEST_ERROR + if((ninfo2.hdr.flags & H5O_HDR_STORE_TIMES) == 0) TEST_ERROR + if(ninfo.hdr.space.total >= ninfo2.hdr.space.total) TEST_ERROR + if(ninfo.hdr.space.meta >= ninfo2.hdr.space.meta) TEST_ERROR /* Close the property lists */ if(H5Pclose(gcpl_id) < 0) TEST_ERROR @@ -13962,10 +18157,14 @@ timestamps(hid_t fapl) if(track_times != TRUE) TEST_ERROR /* Query the object information for each group */ - if(H5Oget_info2(group_id, &oinfo, H5O_INFO_TIME|H5O_INFO_HDR) < 0) TEST_ERROR - if(H5Oget_info2(group_id2, &oinfo2, H5O_INFO_TIME|H5O_INFO_HDR) < 0) TEST_ERROR + if(H5Oget_info3(group_id, &oinfo, H5O_INFO_TIME) < 0) TEST_ERROR + if(H5Oget_info3(group_id2, &oinfo2, H5O_INFO_TIME) < 0) TEST_ERROR + /* Native file format info */ + if(H5Oget_native_info(group_id, &ninfo, H5O_NATIVE_INFO_HDR) < 0) TEST_ERROR + if(H5Oget_native_info(group_id2, &ninfo2, H5O_NATIVE_INFO_HDR) < 0) TEST_ERROR /* Sanity check object information for each group */ + /* Generic info */ if(oinfo.atime != 0) TEST_ERROR if(oinfo.mtime != 0) TEST_ERROR if(oinfo.ctime != 0) TEST_ERROR @@ -13974,10 +18173,11 @@ timestamps(hid_t fapl) if(oinfo.mtime == oinfo2.mtime) TEST_ERROR if(oinfo.ctime == oinfo2.ctime) TEST_ERROR if(oinfo.btime == oinfo2.btime) TEST_ERROR - if((oinfo.hdr.flags & H5O_HDR_STORE_TIMES) != 0) TEST_ERROR - if((oinfo2.hdr.flags & H5O_HDR_STORE_TIMES) == 0) TEST_ERROR - if(oinfo.hdr.space.total >= oinfo2.hdr.space.total) TEST_ERROR - if(oinfo.hdr.space.meta >= oinfo2.hdr.space.meta) TEST_ERROR + /* Native file format info */ + if((ninfo.hdr.flags & H5O_HDR_STORE_TIMES) != 0) TEST_ERROR + if((ninfo2.hdr.flags & H5O_HDR_STORE_TIMES) == 0) TEST_ERROR + if(ninfo.hdr.space.total >= ninfo2.hdr.space.total) TEST_ERROR + if(ninfo.hdr.space.meta >= ninfo2.hdr.space.meta) TEST_ERROR /* Close the property lists */ if(H5Pclose(gcpl_id) < 0) TEST_ERROR @@ -14065,6 +18265,9 @@ main(void) /* General tests... (on both old & new format groups */ nerrors += mklinks(my_fapl, new_format) < 0 ? 1 : 0; nerrors += cklinks(my_fapl, new_format) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += cklinks_deprec(my_fapl, new_format) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += new_links(my_fapl, new_format) < 0 ? 1 : 0; nerrors += ck_new_links(my_fapl, new_format) < 0 ? 1 : 0; nerrors += long_links(my_fapl, new_format) < 0 ? 1 : 0; @@ -14072,13 +18275,18 @@ main(void) /* Test new H5L link creation routine */ nerrors += test_lcpl(my_fapl, new_format); +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += test_lcpl_deprec(my_fapl, new_format); +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += test_move(my_fapl, new_format); nerrors += test_copy(my_fapl, new_format); nerrors += test_move_preserves(my_fapl, new_format); #ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += test_move_preserves_deprec(my_fapl, new_format); nerrors += test_deprec(my_fapl, new_format); #endif /* H5_NO_DEPRECATED_SYMBOLS */ + /* tests for external link */ /* Test external file cache first, so it sees the default efc setting on the fapl */ @@ -14106,6 +18314,9 @@ main(void) } /* end else */ nerrors += external_link_root(my_fapl, new_format) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += external_link_root_deprec(my_fapl, new_format) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += external_link_path(my_fapl, new_format) < 0 ? 1 : 0; nerrors += external_link_self(my_fapl, new_format) < 0 ? 1 : 0; nerrors += external_link_pingpong(my_fapl, new_format) < 0 ? 1 : 0; @@ -14113,11 +18324,17 @@ main(void) nerrors += external_link_dangling(my_fapl, new_format) < 0 ? 1 : 0; nerrors += external_link_recursive(my_fapl, new_format) < 0 ? 1 : 0; nerrors += external_link_query(my_fapl, new_format) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += external_link_query_deprec(my_fapl, new_format) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += external_link_unlink_compact(my_fapl, new_format) < 0 ? 1 : 0; nerrors += external_link_unlink_dense(my_fapl, new_format) < 0 ? 1 : 0; nerrors += external_link_move(my_fapl, new_format) < 0 ? 1 : 0; nerrors += external_link_ride(my_fapl, new_format) < 0 ? 1 : 0; nerrors += external_link_closing(my_fapl, new_format) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += external_link_closing_deprec(my_fapl, new_format) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += external_link_endian(new_format) < 0 ? 1 : 0; nerrors += external_link_strong(my_fapl, new_format) < 0 ? 1 : 0; @@ -14156,14 +18373,29 @@ main(void) * above has already been tested for UD links. */ if(new_format == TRUE) { - nerrors += ud_hard_links(fapl2) < 0 ? 1 : 0; /* requires new format groups */ - nerrors += ud_link_reregister(fapl2) < 0 ? 1 : 0; /* requires new format groups */ + nerrors += ud_hard_links(fapl2) < 0 ? 1 : 0; /* requires new format groups */ +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += ud_hard_links_deprec(fapl2) < 0 ? 1 : 0; /* requires new format groups */ +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + nerrors += ud_link_reregister(fapl2) < 0 ? 1 : 0; /* requires new format groups */ +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += ud_link_reregister_deprec(fapl2) < 0 ? 1 : 0; /* requires new format groups */ +#endif /* H5_NO_DEPRECATED_SYMBOLS */ } /* end if */ nerrors += ud_callbacks(my_fapl, new_format) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += ud_callbacks_deprec(my_fapl, new_format) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += ud_link_errors(my_fapl, new_format) < 0 ? 1 : 0; nerrors += lapl_udata(my_fapl, new_format) < 0 ? 1 : 0; nerrors += lapl_nlinks(my_fapl, new_format) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += lapl_nlinks_deprec(my_fapl, new_format) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += linkinfo(my_fapl, new_format) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += linkinfo_deprec(my_fapl, new_format) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ /* Misc. extra tests, useful for both new & old format files */ nerrors += link_visit(my_fapl, new_format) < 0 ? 1 : 0; @@ -14187,12 +18419,27 @@ main(void) * correct. */ nerrors += corder_create_compact(fapl2) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += corder_create_compact_deprec(fapl2) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += corder_create_dense(fapl2) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += corder_create_dense_deprec(fapl2) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += corder_transition(fapl2) < 0 ? 1 : 0; nerrors += corder_delete(fapl2) < 0 ? 1 : 0; nerrors += link_info_by_idx(fapl2) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += link_info_by_idx_deprec(fapl2) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += delete_by_idx(fapl2) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += delete_by_idx_deprec(fapl2) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += link_iterate(fapl2) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += link_iterate_deprec(fapl2) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += open_by_idx(fapl2) < 0 ? 1 : 0; nerrors += object_info(fapl2) < 0 ? 1 : 0; nerrors += group_info(fapl2) < 0 ? 1 : 0; @@ -14200,8 +18447,17 @@ main(void) /* Test new API calls on old-style groups */ nerrors += link_info_by_idx_old(fapl) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += link_info_by_idx_old_deprec(fapl) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += delete_by_idx_old(fapl) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += delete_by_idx_old_deprec(fapl) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += link_iterate_old(fapl) < 0 ? 1 : 0; +#ifndef H5_NO_DEPRECATED_SYMBOLS + nerrors += link_iterate_old_deprec(fapl) < 0 ? 1 : 0; +#endif /* H5_NO_DEPRECATED_SYMBOLS */ nerrors += open_by_idx_old(fapl) < 0 ? 1 : 0; nerrors += object_info_old(fapl) < 0 ? 1 : 0; nerrors += group_info_old(fapl) < 0 ? 1 : 0; @@ -7528,7 +7528,7 @@ error: *------------------------------------------------------------------------- */ static int -set_multi_split(hid_t fapl, hsize_t pagesize, hbool_t multi, hbool_t split) +set_multi_split(hid_t fapl, hsize_t pagesize, hbool_t is_multi_or_split) { H5FD_mem_t memb_map[H5FD_MEM_NTYPES]; hid_t memb_fapl_arr[H5FD_MEM_NTYPES]; @@ -7537,7 +7537,7 @@ set_multi_split(hid_t fapl, hsize_t pagesize, hbool_t multi, hbool_t split) hbool_t relax; H5FD_mem_t mt; - HDassert(multi || split); + HDassert(is_multi_or_split); HDmemset(memb_name, 0, sizeof memb_name); @@ -7545,7 +7545,7 @@ set_multi_split(hid_t fapl, hsize_t pagesize, hbool_t multi, hbool_t split) if(H5Pget_fapl_multi(fapl, memb_map, memb_fapl_arr, memb_name, memb_addr, &relax) < 0) TEST_ERROR - if(split) { + if(is_multi_or_split) { /* Set memb_addr aligned */ memb_addr[H5FD_MEM_SUPER] = ((memb_addr[H5FD_MEM_SUPER] + pagesize - 1) / pagesize) * pagesize; memb_addr[H5FD_MEM_DRAW] = ((memb_addr[H5FD_MEM_DRAW] + pagesize - 1) / pagesize) * pagesize; @@ -7614,7 +7614,7 @@ test_page_alloc_xfree(const char *env_h5_drvr, hid_t fapl) if((fapl_new = H5Pcopy(fapl)) < 0) TEST_ERROR if(multi || split) - if(set_multi_split(fapl_new, 4096, multi, split) < 0) + if(set_multi_split(fapl_new, 4096, split) < 0) TEST_ERROR; /* Test with TRUE or FALSE for persisting free-space */ diff --git a/test/mount.c b/test/mount.c index 72973ad..3abe084 100644 --- a/test/mount.c +++ b/test/mount.c @@ -400,8 +400,9 @@ static int test_hide(hid_t fapl) { hid_t file1 = -1, file2 = -1, grp = -1; - H5O_info_t oi1, oi2; + H5O_info2_t oi1, oi2; char filename1[1024], filename2[1024]; + hbool_t same_obj; TESTING("name hiding under mount point"); h5_fixname(FILENAME[0], fapl, filename1, sizeof(filename1)); @@ -412,7 +413,7 @@ test_hide(hid_t fapl) FAIL_STACK_ERROR /* Get information about file1:/mnt1/file1 for later */ - if(H5Oget_info_by_name2(file1, "/mnt1/file1", &oi1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(file1, "/mnt1/file1", &oi1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Build the virtual file */ @@ -427,19 +428,32 @@ test_hide(hid_t fapl) H5_FAILED(); HDputs(" Name is still accessible under mount point."); TEST_ERROR - } /* end if */ + } /* * The original objects under file1:/mnt1 are still accessible by their * other names. This is a rather stupid test but demonstrates a point. */ - if(H5Oget_info_by_name2(file1, "/file1", &oi2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(file1, "/file1", &oi2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(oi1.fileno != oi2.fileno || H5F_addr_ne(oi1.addr, oi2.addr)) { + + same_obj = TRUE; + if(oi1.fileno == oi2.fileno) { + int token_cmp; + + if(H5Otoken_cmp(file1, &oi1.token, &oi2.token, &token_cmp) < 0) + FAIL_STACK_ERROR + if(token_cmp) + same_obj = FALSE; + } + else + same_obj = FALSE; + + if(!same_obj) { H5_FAILED(); HDputs(" Hard link failed for hidden object."); TEST_ERROR - } /* end if */ + } /* Unmount and close objects */ if(H5Funmount(file1, "/mnt1") < 0) FAIL_STACK_ERROR @@ -480,8 +494,9 @@ static int test_assoc(hid_t fapl) { hid_t file1 = -1, file2 = -1; - H5O_info_t oi1, oi2; + H5O_info2_t oi1, oi2; char filename1[1024], filename2[1024]; + hbool_t same_obj; TESTING("mount point open"); h5_fixname(FILENAME[0], fapl, filename1, sizeof filename1); @@ -493,7 +508,7 @@ test_assoc(hid_t fapl) FAIL_STACK_ERROR /* Get information about the root of file2 */ - if(H5Oget_info2(file2, &oi1, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(file2, &oi1, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR /* Create the virtual file */ @@ -504,11 +519,23 @@ test_assoc(hid_t fapl) * Get info about the mount point -- should be the same as the root group * of file2. */ - if(H5Oget_info_by_name2(file1, "/mnt1", &oi2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(file1, "/mnt1", &oi2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(oi1.fileno != oi2.fileno || H5F_addr_ne(oi1.addr, oi2.addr)) { - H5_FAILED(); + same_obj = TRUE; + if(oi1.fileno == oi2.fileno) { + int token_cmp; + + if(H5Otoken_cmp(file1, &oi1.token, &oi2.token, &token_cmp) < 0) + FAIL_STACK_ERROR + if(token_cmp) + same_obj = FALSE; + } + else + same_obj = FALSE; + + if(!same_obj) { + H5_FAILED(); HDputs(" Association failed."); TEST_ERROR } /* end if */ @@ -676,7 +703,7 @@ static int test_preopen(hid_t fapl) { hid_t file1 = -1, file2 = -1, grp = -1; - H5O_info_t oinfo; + H5O_info2_t oinfo; char filename1[1024], filename2[1024]; TESTING("preopening objects under the mount point"); @@ -694,7 +721,7 @@ test_preopen(hid_t fapl) if(H5Fmount(file1, "/mnt1", file2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Now access the thing we previously opened */ - if(H5Oget_info2(grp, &oinfo, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR + if(H5Oget_info3(grp, &oinfo, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR /* Shut down */ if(H5Funmount(file1, "/mnt1") < 0) FAIL_STACK_ERROR @@ -738,7 +765,7 @@ test_postopen(hid_t fapl) { hid_t file1 = -1, file2 = -1, grp = -1; - H5O_info_t oinfo; + H5O_info2_t oinfo; char filename1[1024], filename2[1024]; TESTING("open object access after unmount"); @@ -758,10 +785,10 @@ test_postopen(hid_t fapl) if(H5Funmount(file1, "/mnt1") < 0) FAIL_STACK_ERROR /* Now access the thing we previously opened */ - if(H5Oget_info2(grp, &oinfo, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR + if(H5Oget_info3(grp, &oinfo, H5O_INFO_BASIC) < 0) FAIL_STACK_ERROR /* Try accessing it from the file */ - if(H5Oget_info_by_name2(file2, "/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file2, "/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Shut down */ if(H5Gclose(grp) < 0) FAIL_STACK_ERROR @@ -803,7 +830,7 @@ static int test_unlink(hid_t fapl) { hid_t file1 = -1, file2 = -1, mnt = -1, root = -1; - H5O_info_t oinfo; + H5O_info2_t oinfo; char filename1[1024], filename2[1024]; herr_t status; @@ -831,12 +858,12 @@ test_unlink(hid_t fapl) * before the H5Fmount() and thus refers to the mount point itself rather * than the group mounted there. */ - if(H5Oget_info_by_name2(file1, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(mnt, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(root, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(root, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file1, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(mnt, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(root, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(root, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR H5E_BEGIN_TRY { - status = H5Oget_info_by_name2(mnt, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + status = H5Oget_info_by_name3(mnt, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(status >= 0) { H5_FAILED(); @@ -851,9 +878,9 @@ test_unlink(hid_t fapl) * We should still be able to get to "/file2" of file2 by starting at * `root' which is still open, but not by name. */ - if(H5Oget_info_by_name2(root, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(root, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR H5E_BEGIN_TRY { - status = H5Oget_info_by_name2(mnt, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + status = H5Oget_info_by_name3(mnt, "file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(status >= 0) { H5_FAILED(); @@ -861,7 +888,7 @@ test_unlink(hid_t fapl) TEST_ERROR } /* end if */ H5E_BEGIN_TRY { - status = H5Oget_info_by_name2(file2, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + status = H5Oget_info_by_name3(file2, "/mnt_unlink/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; if(status >= 0) { H5_FAILED(); @@ -932,7 +959,7 @@ static int test_mvmpt(hid_t fapl) { hid_t file1 = -1, file2 = -1; - H5O_info_t oinfo; + H5O_info2_t oinfo; char filename1[1024], filename2[1024]; TESTING("mount point renaming"); @@ -949,7 +976,7 @@ test_mvmpt(hid_t fapl) if(H5Lmove(file1, "/mnt_move_a", H5L_SAME_LOC, "/mnt_move_b", H5P_DEFAULT, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Access something under the new name */ - if(H5Oget_info_by_name2(file1, "/mnt_move_b/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file1, "/mnt_move_b/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Shut down */ if(H5Funmount(file1, "/mnt_move_b") < 0) FAIL_STACK_ERROR @@ -1094,7 +1121,7 @@ static int test_uniformity(hid_t fapl) { hid_t file1 = -1, file2 = -1; - H5O_info_t oinfo; + H5O_info2_t oinfo; char filename1[1024], filename2[1024]; TESTING("file handle uniformity"); @@ -1108,18 +1135,18 @@ test_uniformity(hid_t fapl) if(H5Fmount(file1, "/mnt1", file2, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Access some things from the file1 handle */ - if(H5Oget_info_by_name2(file1, "/", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file1, "/mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file1, "mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file1, "/mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file1, "mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file1, "/", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file1, "/mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file1, "mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file1, "/mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file1, "mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Access the same things from the file2 handle */ - if(H5Oget_info_by_name2(file2, "/", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file2, "/mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file2, "mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file2, "/mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file2, "mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file2, "/", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file2, "/mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file2, "mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file2, "/mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file2, "mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Shut down */ if(H5Funmount(file1, "/mnt1") < 0) FAIL_STACK_ERROR @@ -1158,7 +1185,7 @@ static int test_close(hid_t fapl) { hid_t file1 = -1, file2 = -1; - H5O_info_t oinfo; + H5O_info2_t oinfo; char filename1[1024], filename2[1024]; TESTING("file handle close"); @@ -1176,7 +1203,7 @@ test_close(hid_t fapl) * still accessible through the file2 handle. */ if(H5Fclose(file1) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file2, "/mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name3(file2, "/mnt1", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { H5_FAILED(); HDputs(" File1 contents are not accessible!"); TEST_ERROR @@ -1197,7 +1224,7 @@ test_close(hid_t fapl) * Close file2. It is not actually closed because it's a child of file1. */ if(H5Fclose(file2) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file1, "/mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file1, "/mnt1/file2", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(H5Fclose(file1) < 0) FAIL_STACK_ERROR /* Check that all file IDs have been closed */ @@ -2432,7 +2459,7 @@ test_fcdegree_strong(hid_t fapl) hid_t fid1 = -1, fid2 = -1; /* File IDs */ hid_t gidA = -1, gidM = -1, gidAM = -1; /* Group IDs */ hid_t fapl_id = -1; /* FAPL IDs */ - H5O_info_t oinfo; + H5O_info2_t oinfo; char filename1[1024], filename2[1024]; /* Name of files to mount */ herr_t ret; /* Generic return value */ @@ -2501,9 +2528,9 @@ test_fcdegree_strong(hid_t fapl) TEST_ERROR /* Check that objects are still open */ - if(H5Oget_info2(gidA, &oinfo, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(gidA, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info2(gidAM, &oinfo, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(gidAM, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR /* Close file #2 (should close open objects also) */ @@ -2512,12 +2539,12 @@ test_fcdegree_strong(hid_t fapl) /* Check that objects are closed */ H5E_BEGIN_TRY { - ret = H5Oget_info2(gidA, &oinfo, H5O_INFO_BASIC); + ret = H5Oget_info3(gidA, &oinfo, H5O_INFO_BASIC); } H5E_END_TRY; if(ret >= 0) TEST_ERROR H5E_BEGIN_TRY { - ret = H5Oget_info2(gidAM, &oinfo, H5O_INFO_BASIC); + ret = H5Oget_info3(gidAM, &oinfo, H5O_INFO_BASIC); } H5E_END_TRY; if(ret >= 0) TEST_ERROR diff --git a/test/mtime.c b/test/mtime.c index 06f576b..81a20db 100644 --- a/test/mtime.c +++ b/test/mtime.c @@ -60,9 +60,10 @@ main(void) hsize_t size[1] = {2}; time_t now; struct tm *tm; - H5O_info_t oi1, oi2; + H5O_info2_t oi1, oi2; signed char buf1[32], buf2[32]; char filename[1024]; + int token_cmp; h5_reset(); fapl = h5_fileaccess(); @@ -88,14 +89,15 @@ main(void) */ h5_fixname(FILENAME[0], fapl, filename, sizeof filename); if((file = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR; - if(H5Oget_info_by_name2(file, "dset", &oi1, H5O_INFO_BASIC|H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR; + if(H5Oget_info_by_name3(file, "dset", &oi1, H5O_INFO_BASIC|H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR; if((dset = H5Dopen2(file, "dset", H5P_DEFAULT)) < 0) TEST_ERROR; - if(H5Oget_info2(dset, &oi2, H5O_INFO_BASIC|H5O_INFO_TIME) < 0) TEST_ERROR; + if(H5Oget_info3(dset, &oi2, H5O_INFO_BASIC|H5O_INFO_TIME) < 0) TEST_ERROR; + if(H5Otoken_cmp(file, &oi1.token, &oi2.token, &token_cmp) < 0)TEST_ERROR; if(H5Dclose(dset) < 0) TEST_ERROR; if(H5Fclose(file) < 0) TEST_ERROR; - /* Compare addresses & times from the two ways of calling H5Oget_info() */ - if(oi1.addr != oi2.addr || oi1.ctime != oi2.ctime) { + /* Compare object tokens & times from the two ways of calling H5Oget_info() */ + if(token_cmp || oi1.ctime != oi2.ctime) { H5_FAILED(); HDputs(" Calling H5Oget_info() with the dataset ID returned"); HDputs(" different values than calling it with a file and dataset"); @@ -132,7 +134,7 @@ main(void) file = H5Fopen(testfile, H5F_ACC_RDONLY, H5P_DEFAULT); if(file >= 0){ - if(H5Oget_info_by_name2(file, "/Dataset1", &oi1, H5O_INFO_TIME, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(file, "/Dataset1", &oi1, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR; if(oi1.ctime != MTIME1) { H5_FAILED(); @@ -162,7 +164,7 @@ main(void) file = H5Fopen(testfile, H5F_ACC_RDONLY, H5P_DEFAULT); if(file >= 0){ - if(H5Oget_info_by_name2(file, "/Dataset1", &oi2, H5O_INFO_TIME, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(file, "/Dataset1", &oi2, H5O_INFO_TIME, H5P_DEFAULT) < 0) TEST_ERROR; if(oi2.ctime != MTIME2) { H5_FAILED(); diff --git a/test/null_vol_connector.c b/test/null_vol_connector.c index 985b576..ef76fe6 100644 --- a/test/null_vol_connector.c +++ b/test/null_vol_connector.c @@ -126,6 +126,11 @@ static const H5VL_class_t null_vol_g = { NULL, /* specific */ NULL /* optional */ }, + { /* token_cls */ + NULL, /* cmp */ + NULL, /* to_str */ + NULL /* from_str */ + }, NULL /* optional */ }; diff --git a/test/objcopy.c b/test/objcopy.c index cabdbfd..5174700 100644 --- a/test/objcopy.c +++ b/test/objcopy.c @@ -168,7 +168,7 @@ unsigned num_attributes_g; /* Number of attributes created */ static struct { size_t nalloc; /* number of slots allocated */ size_t nobjs; /* number of objects */ - haddr_t *obj; /* Addresses of objects seen */ + H5O_token_t *obj; /* Tokens of objects seen */ } idtab_g; /* Local function prototypes */ @@ -191,9 +191,9 @@ compare_attribute_compound_vlstr(hid_t loc, hid_t loc2); /*------------------------------------------------------------------------- - * Function: addr_insert + * Function: token_insert * - * Purpose: Add an address to the table. + * Purpose: Add a token to the table. * * Return: void * @@ -203,7 +203,7 @@ compare_attribute_compound_vlstr(hid_t loc, hid_t loc2); *------------------------------------------------------------------------- */ static void -addr_insert(H5O_info_t *oi) +token_insert(H5O_info2_t *oi) { size_t n; @@ -215,19 +215,19 @@ addr_insert(H5O_info_t *oi) /* Extend the table */ if(idtab_g.nobjs >= idtab_g.nalloc) { idtab_g.nalloc = MAX(256, 2*idtab_g.nalloc); - idtab_g.obj = (haddr_t *)HDrealloc(idtab_g.obj, idtab_g.nalloc * sizeof(idtab_g.obj[0])); + idtab_g.obj = (H5O_token_t *)HDrealloc(idtab_g.obj, idtab_g.nalloc * sizeof(idtab_g.obj[0])); } /* end if */ /* Insert the entry */ n = idtab_g.nobjs++; - idtab_g.obj[n] = oi->addr; -} /* end addr_insert() */ + idtab_g.obj[n] = oi->token; +} /* end token_insert() */ /*------------------------------------------------------------------------- - * Function: addr_lookup + * Function: token_lookup * - * Purpose: Check if address has already been encountered + * Purpose: Check if a token has already been encountered * * Return: Success: TRUE/FALSE * Failure: (can't fail) @@ -238,24 +238,28 @@ addr_insert(H5O_info_t *oi) *------------------------------------------------------------------------- */ static H5_ATTR_PURE hbool_t -addr_lookup(H5O_info_t *oi) +token_lookup(hid_t loc_id, H5O_info2_t *oi) { - size_t n; + size_t n; + int token_cmp; if(oi->rc < 2) return FALSE; /*only one link possible*/ - for(n = 0; n < idtab_g.nobjs; n++) - if(H5F_addr_eq(idtab_g.obj[n], oi->addr)) + for(n = 0; n < idtab_g.nobjs; n++) { + if(H5Otoken_cmp(loc_id, &idtab_g.obj[n], &oi->token, &token_cmp) < 0) + return FALSE; + if(!token_cmp) return TRUE; + } return FALSE; -} /* end addr_lookup() */ +} /* end token_lookup() */ /*------------------------------------------------------------------------- - * Function: addr_reset + * Function: token_reset * - * Purpose: Reset the address tracking data structures + * Purpose: Reset the token tracking data structures * * Return: void * @@ -265,13 +269,13 @@ addr_lookup(H5O_info_t *oi) *------------------------------------------------------------------------- */ static void -addr_reset(void) +token_reset(void) { if(idtab_g.obj) HDfree(idtab_g.obj); idtab_g.obj = NULL; idtab_g.nalloc = idtab_g.nobjs = 0; -} /* end addr_reset() */ +} /* end token_reset() */ /*------------------------------------------------------------------------- @@ -852,7 +856,7 @@ static int compare_std_attributes(hid_t oid, hid_t oid2, hid_t pid) { hid_t aid = -1, aid2 = -1; /* Attribute IDs */ - H5O_info_t oinfo1, oinfo2; /* Object info */ + H5O_info2_t oinfo1, oinfo2; /* Object info */ unsigned cpy_flags; /* Object copy flags */ /* Retrieve the object copy flags from the property list, if it's non-DEFAULT */ @@ -863,10 +867,10 @@ compare_std_attributes(hid_t oid, hid_t oid2, hid_t pid) cpy_flags = 0; /* Check the number of attributes on source dataset */ - if(H5Oget_info2(oid, &oinfo1, H5O_INFO_NUM_ATTRS) < 0) TEST_ERROR + if(H5Oget_info3(oid, &oinfo1, H5O_INFO_NUM_ATTRS) < 0) TEST_ERROR /* Check the number of attributes on destination dataset */ - if(H5Oget_info2(oid2, &oinfo2, H5O_INFO_NUM_ATTRS) < 0) TEST_ERROR + if(H5Oget_info3(oid2, &oinfo2, H5O_INFO_NUM_ATTRS) < 0) TEST_ERROR if(cpy_flags & H5O_COPY_WITHOUT_ATTR_FLAG) { /* Check that the destination has no attributes */ @@ -1055,11 +1059,13 @@ compare_data(hid_t parent1, hid_t parent2, hid_t pid, hid_t tid, size_t nelmts, /* break the infinite loop when the ref_object points to itself */ if(obj_owner > 0) { - H5O_info_t oinfo1, oinfo2; + H5O_info2_t oinfo1, oinfo2; + int token_cmp; - if(H5Oget_info2(obj_owner, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info2(obj1_id, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5F_addr_eq(oinfo1.addr, oinfo2.addr)) { + if(H5Oget_info3(obj_owner, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Oget_info3(obj1_id, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(obj1_id, &oinfo1.token, &oinfo2.token, &token_cmp) < 0) TEST_ERROR + if(!token_cmp) { if(H5Oclose(obj1_id) < 0) TEST_ERROR if(H5Oclose(obj2_id) < 0) TEST_ERROR return TRUE; @@ -1116,11 +1122,13 @@ compare_data(hid_t parent1, hid_t parent2, hid_t pid, hid_t tid, size_t nelmts, /* break the infinite loop when the ref_object points to itself */ if(obj_owner > 0) { - H5O_info_t oinfo1, oinfo2; + H5O_info2_t oinfo1, oinfo2; + int token_cmp; - if(H5Oget_info2(obj_owner, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info2(obj1_id, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5F_addr_eq(oinfo1.addr, oinfo2.addr)) { + if(H5Oget_info3(obj_owner, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Oget_info3(obj1_id, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(obj1_id, &oinfo1.token, &oinfo2.token, &token_cmp) < 0) TEST_ERROR + if(!token_cmp) { if(H5Oclose(obj1_id) < 0) TEST_ERROR if(H5Oclose(obj2_id) < 0) TEST_ERROR return TRUE; @@ -1273,7 +1281,7 @@ compare_datasets(hid_t did, hid_t did2, hid_t pid, const void *wbuf) /* Check that the space used is the same */ /* (Don't check if the dataset is filtered (i.e. compressed, etc.) and - * the datatype is VLEN, since the addresses for the vlen + * the datatype is VLEN, since the tokens for the vlen * data in each dataset will (probably) be different and the storage * size will thus vary) */ @@ -1394,8 +1402,8 @@ compare_groups(hid_t gid, hid_t gid2, hid_t pid, int depth, unsigned copy_flags) if(ginfo2.nlinks > 0) { char objname[NAME_BUF_SIZE]; /* Name of object in group */ char objname2[NAME_BUF_SIZE]; /* Name of object in group */ - H5L_info_t linfo; /* Link information */ - H5L_info_t linfo2; /* Link information */ + H5L_info2_t linfo; /* Link information */ + H5L_info2_t linfo2; /* Link information */ /* Loop over contents of groups */ for(idx = 0; idx < ginfo.nlinks; idx++) { @@ -1405,18 +1413,24 @@ compare_groups(hid_t gid, hid_t gid2, hid_t pid, int depth, unsigned copy_flags) if(HDstrcmp(objname, objname2)) TEST_ERROR /* Get link info */ - if(H5Lget_info(gid, objname, &linfo, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Lget_info(gid2, objname2, &linfo2, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(gid, objname, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(gid2, objname2, &linfo2, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.type != linfo2.type) TEST_ERROR /* Extra checks for "real" objects */ if(linfo.type == H5L_TYPE_HARD) { - hid_t oid, oid2; /* IDs of objects within group */ - H5O_info_t oinfo, oinfo2; /* Object info */ + hid_t oid, oid2; /* IDs of objects within group */ + H5O_info2_t oinfo, oinfo2; /* Data model object info */ + H5O_native_info_t ninfo, ninfo2; /* Native file format object info */ /* Compare some pieces of the object info */ - if(H5Oget_info_by_name2(gid, objname, &oinfo, H5O_INFO_BASIC|H5O_INFO_HDR, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(gid2, objname2, &oinfo2, H5O_INFO_BASIC|H5O_INFO_HDR, H5P_DEFAULT) < 0) TEST_ERROR + /* Get data model object info */ + if(H5Oget_info_by_name3(gid, objname, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(gid2, objname2, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + + /* Get native object info */ + if(H5Oget_native_info_by_name(gid, objname, &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_native_info_by_name(gid2, objname2, &ninfo2, H5O_NATIVE_INFO_HDR, H5P_DEFAULT) < 0) TEST_ERROR if(oinfo.type != oinfo2.type) TEST_ERROR if(oinfo.rc != oinfo2.rc) TEST_ERROR @@ -1427,17 +1441,17 @@ compare_groups(hid_t gid, hid_t gid2, hid_t pid, int depth, unsigned copy_flags) * of messages hasn't increased. */ if(H5O_COPY_PRESERVE_NULL_FLAG & copy_flags) { - if(oinfo.hdr.nmesgs != oinfo2.hdr.nmesgs) + if(ninfo.hdr.nmesgs != ninfo2.hdr.nmesgs) ; else - if(oinfo.hdr.nmesgs < oinfo2.hdr.nmesgs) TEST_ERROR + if(ninfo.hdr.nmesgs < ninfo2.hdr.nmesgs) TEST_ERROR } /* Check for object already having been compared */ - if(addr_lookup(&oinfo)) + if(token_lookup(gid, &oinfo)) continue; else - addr_insert(&oinfo); + token_insert(&oinfo); /* Open objects */ if((oid = H5Oopen(gid, objname, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR @@ -1580,8 +1594,8 @@ test_copy_named_datatype(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -1605,7 +1619,7 @@ test_copy_named_datatype(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the datatype from SRC to DST */ @@ -1673,8 +1687,8 @@ test_copy_named_datatype_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_ h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -1698,7 +1712,7 @@ test_copy_named_datatype_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_ /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the datatype from SRC to DST */ @@ -1766,8 +1780,8 @@ test_copy_named_datatype_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -1797,7 +1811,7 @@ test_copy_named_datatype_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the datatype from SRC to DST */ @@ -1861,10 +1875,11 @@ test_copy_named_datatype_attr_self(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap hid_t aid = -1; /* Attribute ID */ hid_t sid = -1; /* Dataspace ID */ hsize_t dims[2] = {3, 4}; /* Dataspace dimensions */ - H5O_info_t oinfo, oinfo2; /* Object info */ + H5O_info2_t oinfo, oinfo2; /* Object info */ H5G_info_t ginfo; /* Group info */ - char src_filename[NAME_BUF_SIZE]; - char dst_filename[NAME_BUF_SIZE]; + hbool_t same_type; + char src_filename[NAME_BUF_SIZE]; + char dst_filename[NAME_BUF_SIZE]; TESTING("H5Ocopy(): named datatype with self-referential attribute"); @@ -1872,8 +1887,8 @@ test_copy_named_datatype_attr_self(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -1912,7 +1927,7 @@ test_copy_named_datatype_attr_self(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the datatype from SRC to DST */ @@ -1939,10 +1954,20 @@ test_copy_named_datatype_attr_self(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* verify that the attribute's datatype is committed */ if(H5Tcommitted(tid) != TRUE) TEST_ERROR - /* verify that the addresses of the datatypes are the same */ - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info2(tid2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.fileno != oinfo2.fileno || oinfo.addr != oinfo2.addr) + /* verify that the tokens of the datatypes are the same */ + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Oget_info3(tid2, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR + + same_type = TRUE; + if(oinfo.fileno == oinfo2.fileno) { + int token_cmp; + if(H5Otoken_cmp(tid2, &oinfo.token, &oinfo2.token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) same_type = FALSE; + } + else + same_type = FALSE; + + if(!same_type) FAIL_PUTS_ERROR("destination attribute does not use the same committed datatype") /* Verify that there are only 2 links int he destination root group */ @@ -2015,8 +2040,8 @@ test_copy_dataset_simple(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -2053,7 +2078,7 @@ test_copy_dataset_simple(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -2144,8 +2169,8 @@ test_copy_dataset_versionbounds(hid_t fcpl_src, hid_t fapl_src) h5_fixname(FILENAME[4], fapl_src, src_fname, sizeof src_fname); h5_fixname(FILENAME[5], fapl_dst, dst_fname, sizeof dst_fname); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* Create source file */ fid_src = H5Fcreate(src_fname, H5F_ACC_TRUNC, fcpl_src, fapl_src); @@ -2202,7 +2227,7 @@ test_copy_dataset_versionbounds(hid_t fcpl_src, hid_t fapl_src) fid_dst = H5Fcreate(dst_fname, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_dst); if (fid_dst < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR @@ -2306,8 +2331,8 @@ test_copy_dataset_simple_samefile(hid_t fcpl, hid_t fapl) /* Initialize the filenames */ h5_fixname(FILENAME[0], fapl, filename, sizeof filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl)) < 0) TEST_ERROR @@ -2413,8 +2438,8 @@ test_copy_dataset_simple_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -2451,7 +2476,7 @@ test_copy_dataset_simple_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -2537,8 +2562,8 @@ test_copy_dataset_compound(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -2582,7 +2607,7 @@ test_copy_dataset_compound(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -2669,8 +2694,8 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -2867,7 +2892,7 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the datasets from SRC to DST */ @@ -3072,8 +3097,8 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -3265,7 +3290,7 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the datasets from SRC to DST */ @@ -3482,8 +3507,8 @@ test_copy_dataset_chunked_sparse(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -3640,7 +3665,7 @@ test_copy_dataset_chunked_sparse(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the datasets from SRC to DST */ @@ -3795,8 +3820,8 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -3942,7 +3967,7 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -4129,8 +4154,8 @@ test_copy_dataset_no_edge_filt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -4180,7 +4205,7 @@ test_copy_dataset_no_edge_filt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -4276,8 +4301,8 @@ test_copy_dataset_compact(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -4323,7 +4348,7 @@ test_copy_dataset_compact(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -4408,8 +4433,8 @@ test_copy_dataset_external(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -4450,7 +4475,7 @@ test_copy_dataset_external(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -4530,8 +4555,8 @@ test_copy_dataset_named_dtype(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hi h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -4571,7 +4596,7 @@ test_copy_dataset_named_dtype(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hi /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -4652,8 +4677,8 @@ test_copy_dataset_named_dtype_hier(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -4708,7 +4733,7 @@ test_copy_dataset_named_dtype_hier(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -4791,8 +4816,8 @@ test_copy_dataset_named_dtype_hier_outside(hid_t fcpl_src, hid_t fcpl_dst, hid_t h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -4847,7 +4872,7 @@ test_copy_dataset_named_dtype_hier_outside(hid_t fcpl_src, hid_t fcpl_dst, hid_t /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -4936,8 +4961,8 @@ test_copy_dataset_multi_ohdr_chunks(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fa h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -4991,7 +5016,7 @@ test_copy_dataset_multi_ohdr_chunks(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fa /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -5078,8 +5103,8 @@ test_copy_dataset_attr_named_dtype(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -5137,7 +5162,7 @@ test_copy_dataset_attr_named_dtype(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -5224,8 +5249,8 @@ test_copy_dataset_contig_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_ h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -5258,7 +5283,7 @@ test_copy_dataset_contig_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_ /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -5362,8 +5387,8 @@ test_copy_dataset_chunked_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -5417,7 +5442,7 @@ test_copy_dataset_chunked_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -5545,8 +5570,8 @@ test_copy_dataset_compact_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -5586,7 +5611,7 @@ test_copy_dataset_compact_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -5677,8 +5702,8 @@ test_copy_attribute_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -5712,7 +5737,7 @@ test_copy_attribute_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -5970,8 +5995,8 @@ test_copy_attribute_compound_vlstr(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) @@ -6026,7 +6051,7 @@ test_copy_attribute_compound_vlstr(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) FAIL_STACK_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR @@ -6152,8 +6177,8 @@ test_copy_dataset_compressed_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -6195,7 +6220,7 @@ test_copy_dataset_compressed_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -6285,8 +6310,8 @@ test_copy_group_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_ h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -6310,7 +6335,7 @@ test_copy_group_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_ /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the group from SRC to DST */ @@ -6389,8 +6414,8 @@ test_copy_root_group(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_f h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -6438,7 +6463,7 @@ test_copy_root_group(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_f /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the group from SRC to DST */ @@ -6520,8 +6545,8 @@ test_copy_group(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl) h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -6570,7 +6595,7 @@ test_copy_group(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl) /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the group from SRC to DST */ @@ -6653,8 +6678,8 @@ test_copy_group_deep(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_f h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -6712,7 +6737,7 @@ test_copy_group_deep(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_f /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the group from SRC to DST */ @@ -6784,8 +6809,8 @@ test_copy_group_loop(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_f h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -6823,7 +6848,7 @@ test_copy_group_loop(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_f /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the group from SRC to DST */ @@ -6901,8 +6926,8 @@ test_copy_group_wide_loop(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -6952,7 +6977,7 @@ test_copy_group_wide_loop(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the group from SRC to DST */ @@ -7018,7 +7043,7 @@ test_copy_group_links(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_ hid_t plid = -1; /* Object copy plist ID */ hsize_t dim2d[2]; hsize_t dim1d[1]; - H5L_info_t linfo; + H5L_info2_t linfo; int buf[DIM_SIZE_1][DIM_SIZE_2]; int i, j; unsigned expand_soft; @@ -7040,8 +7065,8 @@ test_copy_group_links(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_ h5_fixname(FILENAME[1], src_fapl, dst_filename, sizeof dst_filename); h5_fixname(FILENAME[2], dst_fapl, ext_filename, sizeof ext_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -7135,7 +7160,7 @@ test_copy_group_links(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_ /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the group from SRC to DST */ @@ -7152,7 +7177,7 @@ test_copy_group_links(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_ * re-add it as a soft link so compare_groups() works */ if(expand_soft) { /* Check link type */ - if(H5Lget_info(fid_dst, NAME_LINK_SOFT, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid_dst, NAME_LINK_SOFT, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.type != H5L_TYPE_HARD) FAIL_PUTS_ERROR("Soft link was not expanded to a hard link") @@ -7175,7 +7200,7 @@ test_copy_group_links(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_ * and re-add it as an external link so compare_groups() works */ if(expand_ext) { /* Check link type */ - if(H5Lget_info(fid_dst, NAME_LINK_EXTERN, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(fid_dst, NAME_LINK_EXTERN, &linfo, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.type != H5L_TYPE_HARD) FAIL_PUTS_ERROR("External link was not expanded to a hard link") @@ -7295,8 +7320,8 @@ test_copy_soft_link(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fa h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -7341,7 +7366,7 @@ test_copy_soft_link(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fa /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -7425,8 +7450,8 @@ test_copy_ext_link(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fap h5_fixname(FILENAME[1], src_fapl, dst_filename, sizeof dst_filename); h5_fixname(FILENAME[2], dst_fapl, ext_filename, sizeof ext_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -7474,7 +7499,7 @@ test_copy_ext_link(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fap /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -7558,8 +7583,8 @@ test_copy_exist(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl) h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -7596,7 +7621,7 @@ test_copy_exist(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl) /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -7667,8 +7692,8 @@ test_copy_path(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl) h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -7705,7 +7730,7 @@ test_copy_path(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl) /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST (should fail - intermediate groups not there) */ @@ -7789,8 +7814,8 @@ test_copy_same_file_named_datatype(hid_t fcpl_src, hid_t fapl) /* Initialize the filenames */ h5_fixname(FILENAME[0], fapl, filename, sizeof filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl_src, fapl)) < 0) TEST_ERROR @@ -7868,8 +7893,8 @@ test_copy_old_layout(hid_t fcpl_dst, hid_t fapl, hbool_t test_open) /* Initialize the destination filename */ h5_fixname(FILENAME[1], fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* Setup */ if((src_fapl = h5_fileaccess_flags(H5_FILEACCESS_LIBVER)) < 0) TEST_ERROR @@ -7883,7 +7908,7 @@ test_copy_old_layout(hid_t fcpl_dst, hid_t fapl, hbool_t test_open) /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if(test_open) { @@ -7975,8 +8000,8 @@ test_copy_dataset_compact_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -8025,7 +8050,7 @@ test_copy_dataset_compact_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -8129,8 +8154,8 @@ test_copy_dataset_contig_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -8172,7 +8197,7 @@ test_copy_dataset_contig_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -8284,8 +8309,8 @@ test_copy_dataset_chunked_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -8337,7 +8362,7 @@ test_copy_dataset_chunked_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -8445,8 +8470,8 @@ test_copy_dataset_compressed_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_ h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -8496,7 +8521,7 @@ test_copy_dataset_compressed_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_ /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -8615,8 +8640,8 @@ test_copy_dataset_compact_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -8659,7 +8684,7 @@ test_copy_dataset_compact_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -8785,8 +8810,8 @@ test_copy_dataset_contig_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -8830,7 +8855,7 @@ test_copy_dataset_contig_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -8951,8 +8976,8 @@ test_copy_dataset_chunked_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -9159,8 +9184,8 @@ test_copy_dataset_compressed_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -9326,8 +9351,8 @@ test_copy_dataset_contig_cmpd_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -9364,7 +9389,7 @@ test_copy_dataset_contig_cmpd_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -9472,8 +9497,8 @@ test_copy_dataset_chunked_cmpd_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -9517,7 +9542,7 @@ test_copy_dataset_chunked_cmpd_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -9625,8 +9650,8 @@ test_copy_dataset_compact_cmpd_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -9670,7 +9695,7 @@ test_copy_dataset_compact_cmpd_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy the dataset from SRC to DST */ @@ -9776,8 +9801,8 @@ test_copy_null_ref(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fap h5_fixname(FILENAME[1], src_fapl, mid_filename, sizeof mid_filename); h5_fixname(FILENAME[2], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* Create source file */ if((fid1 = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) @@ -9945,8 +9970,8 @@ test_copy_null_ref_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t ds h5_fixname(FILENAME[1], src_fapl, mid_filename, sizeof mid_filename); h5_fixname(FILENAME[2], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* Create source file */ if((fid1 = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) @@ -10107,8 +10132,8 @@ test_copy_attr_crt_order(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], src_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* Create source file */ if((fid1 = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) @@ -10225,11 +10250,12 @@ test_copy_committed_datatype_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap unsigned int i; /* Local index variables */ hsize_t dim1d[1]; /* Dataset dimensions */ int buf[DIM_SIZE_1]; /* Buffer for writing data */ - H5O_info_t oinfo; /* Object info */ - haddr_t exp_addr; /* Expected object address */ + H5O_info2_t oinfo; /* Object info */ + H5O_token_t exp_token; /* Expected object token */ char src1_filename[NAME_BUF_SIZE]; char src2_filename[NAME_BUF_SIZE]; char dst_filename[NAME_BUF_SIZE]; + int token_cmp; if(reopen) { TESTING("H5Ocopy(): merging committed datatypes with reopen") @@ -10246,8 +10272,8 @@ test_copy_committed_datatype_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap h5_fixname(FILENAME[3], src_fapl, src2_filename, sizeof src2_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source files */ if((fid_src1 = H5Fcreate(src1_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -10323,7 +10349,7 @@ test_copy_committed_datatype_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy SRC1 to DST */ @@ -10338,31 +10364,34 @@ test_copy_committed_datatype_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open SRC1 committed dtype, get address */ + /* Open SRC1 committed dtype, get token */ if((tid = H5Topen2(fid_dst, NAME_GROUP_TOP "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open SRC1 dset dtype, check address */ + /* Open SRC1 dset dtype, check token */ if((did = H5Dopen2(fid_dst, NAME_GROUP_TOP "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open SRC2 committed dtype, check address */ + /* Open SRC2 committed dtype, check token */ if((tid = H5Topen2(fid_dst, NAME_GROUP_TOP2 "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR - /* Open SRC2 dset dtype, check address */ + /* Open SRC2 dset dtype, check token */ if((did = H5Dopen2(fid_dst, NAME_GROUP_TOP2 "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10376,7 +10405,7 @@ test_copy_committed_datatype_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* recreate destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* copy SRC1 to DST */ @@ -10391,19 +10420,20 @@ test_copy_committed_datatype_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open SRC1 dset dtype, get address */ + /* Open SRC1 dset dtype, get token */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open SRC2 dset dtype, check address */ + /* Open SRC2 dset dtype, check token */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10463,9 +10493,10 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo unsigned int i; /* Local index variables */ hsize_t dim1d[1]; /* Dataset dimensions */ int buf[DIM_SIZE_1]; /* Buffer for writing data */ - H5O_info_t oinfo; /* Object info */ - haddr_t exp_addr; /* Expected object address */ + H5O_info2_t oinfo; /* Object info */ + H5O_token_t exp_token; /* Expected object token */ char filename[NAME_BUF_SIZE]; + int token_cmp; if(reopen) TESTING("H5Ocopy(): merging committed datatypes to the source file with reopen") @@ -10479,8 +10510,8 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo /* Initialize the filename */ h5_fixname(FILENAME[0], fapl, filename, sizeof filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create file */ if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl)) < 0) TEST_ERROR @@ -10553,7 +10584,7 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo /* * First copy each group to the destination group 3 (each with their own * group), and verify the committed datatypes are merged as expected. All - * datatypes copied should reference (share an address with) the + * datatypes copied should reference (share a token with) the * corresponding source datatype. */ /* Create destination group */ @@ -10572,61 +10603,68 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo if((fid = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) TEST_ERROR } /* end if */ - /* Open group 1 source committed dtype, get address */ + /* Open group 1 source committed dtype, get token */ if((tid = H5Topen2(fid, NAME_GROUP_TOP "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open group 1 source dset dtype, check address */ + /* Open group 1 source dset dtype, check token */ if((did = H5Dopen2(fid, NAME_GROUP_TOP "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open group 1 committed dtype, check address */ + /* Open group 1 committed dtype, check token */ if((tid = H5Topen2(fid, NAME_GROUP_TOP3 "/" NAME_GROUP_TOP "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR - /* Open group 1 dset dtype, check address */ + /* Open group 1 dset dtype, check token */ if((did = H5Dopen2(fid, NAME_GROUP_TOP3 "/" NAME_GROUP_TOP "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open group 2 source committed dtype, get address and make sure it is + /* Open group 2 source committed dtype, get token and make sure it is * different from group 1 source committed dtype */ if((tid = H5Topen2(fid, NAME_GROUP_TOP2 "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr == exp_addr) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(!token_cmp) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open group 2 source dset dtype, check address */ + /* Open group 2 source dset dtype, check token */ if((did = H5Dopen2(fid, NAME_GROUP_TOP2 "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open group 2 committed dtype, check address */ + /* Open group 2 committed dtype, check token */ if((tid = H5Topen2(fid, NAME_GROUP_TOP3 "/" NAME_GROUP_TOP2 "/" NAME_DATATYPE_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR - /* Open group 2 dset dtype, check address */ + /* Open group 2 dset dtype, check token */ if((did = H5Dopen2(fid, NAME_GROUP_TOP3 "/" NAME_GROUP_TOP2 "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10650,37 +10688,40 @@ test_copy_committed_datatype_merge_same_file(hid_t fcpl, hid_t fapl, hbool_t reo if((fid = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) TEST_ERROR } /* end if */ - /* Open group 1 source dset dtype, get address */ + /* Open group 1 source dset dtype, get token */ if((did = H5Dopen2(fid, NAME_GROUP_TOP "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open group 1 dset dtype, check address */ + /* Open group 1 dset dtype, check token */ if((did = H5Dopen2(fid, NAME_GROUP_TOP4 "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open group 2 source dset dtype, get address and make sure it is + /* Open group 2 source dset dtype, get token and make sure it is * different from group 1 source dset dtype */ if((did = H5Dopen2(fid, NAME_GROUP_TOP2 "/" NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr == exp_addr) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(!token_cmp) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open group 2 dset dtype, check address */ + /* Open group 2 dset dtype, check token */ if((did = H5Dopen2(fid, NAME_GROUP_TOP4 "/" NAME_DATASET_SIMPLE2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10736,10 +10777,11 @@ test_copy_committed_dt_merge_sugg(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl unsigned int i; /* Local index variables */ hsize_t dim1d[1]; /* Dataset dimensions */ int buf[DIM_SIZE_1]; /* Buffer for writing data */ - H5O_info_t oinfo; /* Object info */ - haddr_t exp_addr; /* Expected object address */ + H5O_info2_t oinfo; /* Object info */ + H5O_token_t exp_token; /* Expected object token */ char src_filename[NAME_BUF_SIZE]; char dst_filename[NAME_BUF_SIZE]; + int token_cmp; if(reopen) TESTING("H5Ocopy(): merging committed datatypes with suggestions and reopen") @@ -10754,8 +10796,8 @@ test_copy_committed_dt_merge_sugg(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -10844,17 +10886,18 @@ test_copy_committed_dt_merge_sugg(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open committed dtype "b", get address */ + /* Open committed dtype "b", get token */ if((tid = H5Topen2(fid_dst, "/b", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open dset dtype, check address */ + /* Open dset dtype, check token */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10882,31 +10925,33 @@ test_copy_committed_dt_merge_sugg(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open committed dtype "a", get address */ + /* Open committed dtype "a", get token */ if((tid = H5Topen2(fid_dst, "/a", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open dset 2 dtype, check address */ + /* Open dset 2 dtype, check token */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open committed dtype "b", get address */ + /* Open committed dtype "b", get token */ if((tid = H5Topen2(fid_dst, "/b", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open dset dtype, check address */ + /* Open dset dtype, check token */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -10967,10 +11012,11 @@ test_copy_committed_dt_merge_attr(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl unsigned int i; /* Local index variables */ hsize_t dim1d[1]; /* Dataset dimensions */ int buf[DIM_SIZE_1]; /* Buffer for writing data */ - H5O_info_t oinfo; /* Object info */ - haddr_t exp_addr; /* Expected object address */ + H5O_info2_t oinfo; /* Object info */ + H5O_token_t exp_token; /* Expected object token */ char src_filename[NAME_BUF_SIZE]; char dst_filename[NAME_BUF_SIZE]; + int token_cmp; if(reopen) TESTING("H5Ocopy(): merging committed datatypes with attributes and reopen") @@ -10985,8 +11031,8 @@ test_copy_committed_dt_merge_attr(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -11078,19 +11124,20 @@ test_copy_committed_dt_merge_attr(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open attribute dtype, get address */ + /* Open attribute dtype, get token */ if((aid = H5Aopen_by_name(fid_dst, NAME_GROUP_TOP, "attr", H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Aget_type(aid)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR if(H5Aclose(aid) < 0) TEST_ERROR - /* Open dset dtype, check address */ + /* Open dset dtype, check token */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11198,10 +11245,11 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d int i; /* Local index variable */ hsize_t dim1d[1]; /* dimension sizes */ int buf[DIM_SIZE_1]; /* Buffer for data */ - haddr_t exp_addr_int, exp_addr_short; /* Expected object addresses */ - H5O_info_t oinfo; /* Object info */ + H5O_token_t exp_token_int, exp_token_short; /* Expected object tokenes */ + H5O_info2_t oinfo; /* Object info */ char src_filename[NAME_BUF_SIZE]; /* Source file name */ char dst_filename[NAME_BUF_SIZE]; /* Destination file name */ + int token_cmp; if(reopen) TESTING("H5Ocopy(): hier. of committed datatypes and merging with reopen") @@ -11216,8 +11264,8 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* * Populate source file @@ -11338,16 +11386,16 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d */ if(H5Ocopy(fid_src, "/", fid_dst, SRC_ROOT_GROUP, ocpypl_id, H5P_DEFAULT) < 0) TEST_ERROR - /* get address of committed datatype at root group */ + /* get token of committed datatype at root group */ if((tid = H5Topen2(fid_dst, SRC_ROOT_GROUP "/" ROOT_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr_int = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token_int, &oinfo.token, sizeof(exp_token_int)); if(H5Tclose(tid) < 0) TEST_ERROR - /* get address of committed datatype at /g0 */ + /* get token of committed datatype at /g0 */ if((tid = H5Topen2(fid_dst, SRC_ROOT_GROUP NAME_GROUP_TOP "/" GROUP_NDT_SHORT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr_short = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token_short, &oinfo.token, sizeof(exp_token_short)); if(H5Tclose(tid) < 0) TEST_ERROR /* verify the datatype of first dataset is not committed */ @@ -11357,19 +11405,21 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* check address of datatype for second dataset */ + /* check token of datatype for second dataset */ if((did = H5Dopen2(fid_dst, SRC_ROOT_GROUP NAME_GROUP_TOP "/" SRC_NDT_DSET2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr_short) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token_short, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* check address of datatype for third dataset */ + /* check token of datatype for third dataset */ if((did = H5Dopen2(fid_dst, SRC_ROOT_GROUP NAME_GROUP_TOP "/" SRC_NDT_DSET3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr_int) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token_int, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11378,10 +11428,11 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d */ if(H5Ocopy(fid_src, NAME_GROUP_TOP, fid_dst, NAME_GROUP_TOP, ocpypl_id, H5P_DEFAULT) < 0) TEST_ERROR - /* get address of committed datatype at /g0 */ + /* get token of committed datatype at /g0 */ if((tid = H5Topen2(fid_dst, NAME_GROUP_TOP "/" GROUP_NDT_SHORT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr_short) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token_short, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* verify the datatype of first dataset is not committed */ @@ -11391,19 +11442,21 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* check address of datatype for second dataset */ + /* check token of datatype for second dataset */ if((did = H5Dopen2(fid_dst, NAME_GROUP_TOP "/" SRC_NDT_DSET2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr_short) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token_short, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* check address of datatype for third dataset */ + /* check token of datatype for third dataset */ if((did = H5Dopen2(fid_dst, NAME_GROUP_TOP "/" SRC_NDT_DSET3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr_int) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token_int, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11414,19 +11467,21 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d if(H5Ocopy(fid_src, NAME_GROUP_TOP "/" SRC_NDT_DSET2, fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET2, ocpypl_id, H5P_DEFAULT) < 0) TEST_ERROR if(H5Ocopy(fid_src, NAME_GROUP_TOP "/" SRC_NDT_DSET3, fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET3, ocpypl_id, H5P_DEFAULT) < 0) TEST_ERROR - /* Open attribute with anon ndt (short), get address */ + /* Open attribute with anon ndt (short), get token */ if((aid = H5Aopen_by_name(fid_dst, NAME_GROUP_UNCOPIED, DST_ATTR_ANON_SHORT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Aget_type(aid)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr_short) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token_short, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Aclose(aid) < 0) TEST_ERROR - /* Open attribute with anon ndt (int), get address */ + /* Open attribute with anon ndt (int), get token */ if((aid = H5Aopen_by_name(fid_dst, NAME_GROUP_UNCOPIED, DST_ATTR_ANON_INT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Aget_type(aid)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr_int) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token_int, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Aclose(aid) < 0) TEST_ERROR @@ -11437,19 +11492,21 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* check address of datatype for second dataset */ + /* check token of datatype for second dataset */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr_short) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token_short, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* check address of datatype for third dataset */ + /* check token of datatype for third dataset */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr_int) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token_int, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -11522,10 +11579,11 @@ test_copy_cdt_merge_cdt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t ds hid_t aid = -1; /* Attribute ID */ hid_t ocpypl_id = -1; /* Object copy plist ID */ hsize_t dim1d[1]; /* dimension sizes */ - H5O_info_t oinfo; /* Object info */ - haddr_t exp_addr; /* Expected object addresses */ + H5O_info2_t oinfo; /* Object info */ + H5O_token_t exp_token; /* Expected object token */ char src_filename[NAME_BUF_SIZE]; /* Source file name */ char dst_filename[NAME_BUF_SIZE]; /* Destination file name */ + int token_cmp; if(reopen) TESTING("H5Ocopy(): merging various committed datatypes with reopen") @@ -11536,8 +11594,8 @@ test_copy_cdt_merge_cdt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t ds h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* * Populate source file @@ -11649,53 +11707,57 @@ test_copy_cdt_merge_cdt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t ds /* * Verification */ - /* get address of committed datatype: /src_root/src_ndt_double */ + /* get token of committed datatype: /src_root/src_ndt_double */ if((tid = H5Topen2(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_DOUBLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* get address of committed datatype: /dst_ndt_double */ + /* get token of committed datatype: /dst_ndt_double */ if((tid = H5Topen2(fid_dst, "/" DST_NDT_DOUBLE, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR - /* get address of committed datatype: /src_root/src_ndt_float */ + /* get token of committed datatype: /src_root/src_ndt_float */ if((tid = H5Topen2(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_FLOAT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* get address of committed datatype: /dst_ndt_float */ + /* get token of committed datatype: /dst_ndt_float */ if((tid = H5Topen2(fid_dst, "/" DST_NDT_FLOAT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR - /* get address of committed datatype: /src_root/src_ndt_int */ + /* get token of committed datatype: /src_root/src_ndt_int */ if((tid = H5Topen2(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* get address of committed datatype: /dst_ndt_int */ + /* get token of committed datatype: /dst_ndt_int */ if((tid = H5Topen2(fid_dst, "/" DST_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR - /* get address of committed datatype: /src_root/src_ndt_short */ + /* get token of committed datatype: /src_root/src_ndt_short */ if((tid = H5Topen2(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_SHORT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* open attribute; get its dtype; get dtype's address: /src_root/src_ndt_double/dst_attr */ + /* open attribute; get its dtype; get dtype's token: /src_root/src_ndt_double/dst_attr */ if((aid = H5Aopen_by_name(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_DOUBLE, DST_ATTR, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Aget_type(aid)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Aclose(aid) < 0) TEST_ERROR @@ -11748,10 +11810,11 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t fid_src = -1, fid_dst = -1; /* File IDs */ hid_t tid = -1; /* Datatype ID */ hid_t ocpypl_id = -1; /* Object copy plist ID */ - H5O_info_t oinfo; /* Object info */ - haddr_t exp_addr; /* Expected object address */ + H5O_info2_t oinfo; /* Object info */ + H5O_token_t exp_token; /* Expected object token */ char src_filename[NAME_BUF_SIZE]; char dst_filename[NAME_BUF_SIZE]; + int token_cmp; if(reopen) TESTING("H5Ocopy(): merging committed datatypes with suggestions and reopen") @@ -11762,8 +11825,8 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* * Populate source file @@ -11823,16 +11886,17 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* open committed dtype "/dst_ndt_int", get its address */ + /* open committed dtype "/dst_ndt_int", get its token */ if((tid = H5Topen2(fid_dst, DST_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* check address of "/uncopied/src_ndt_int" */ + /* check token of "/uncopied/src_ndt_int" */ if((tid = H5Topen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* close the DST file */ @@ -11856,16 +11920,17 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* open committed dtype "/uncopied/src_ndt_int", get its address */ + /* open committed dtype "/uncopied/src_ndt_int", get its token */ if((tid = H5Topen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* check address of "/src_ndt_int" */ + /* check token of "/src_ndt_int" */ if((tid = H5Topen2(fid_dst, SRC_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* close the DST file */ @@ -11894,16 +11959,17 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open committed dtype "/uncopied/src_ndt_int", get its address */ + /* Open committed dtype "/uncopied/src_ndt_int", get its token */ if((tid = H5Topen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* check address of "/src_ndt_int2" */ + /* check token of "/src_ndt_int2" */ if((tid = H5Topen2(fid_dst, SRC_NDT_INT2, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* close the DST file */ @@ -11928,16 +11994,17 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open committed dtype "/dst_dt_int", get its address */ + /* Open committed dtype "/dst_dt_int", get its token */ if((tid = H5Topen2(fid_dst, DST_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* check address of "/uncopied/src_ndt_int2" */ + /* check token of "/uncopied/src_ndt_int2" */ if((tid = H5Topen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_INT2, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR /* close the DST file */ @@ -11988,10 +12055,11 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, unsigned int i; /* Local index variables */ hsize_t dim1d[1]; /* Dataset dimensions */ int buf[DIM_SIZE_1]; /* Buffer for writing data */ - H5O_info_t oinfo; /* Object info */ - haddr_t exp_addr; /* Expected object address */ + H5O_info2_t oinfo; /* Object info */ + H5O_token_t exp_token; /* Expected object token */ char src_filename[NAME_BUF_SIZE]; char dst_filename[NAME_BUF_SIZE]; + int token_cmp; if(reopen) TESTING("H5Ocopy(): merging committed datatypes of datasets with suggestions and reopen") @@ -12006,8 +12074,8 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* * Populate source file @@ -12084,17 +12152,18 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open committed dtype "/dst_ndt_int", get its address */ + /* Open committed dtype "/dst_ndt_int", get its token */ if((tid = H5Topen2(fid_dst, DST_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* check address of datatype for the copied dataset: "/uncopied/src_ndt_dset" */ + /* check token of datatype for the copied dataset: "/uncopied/src_ndt_dset" */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12119,19 +12188,20 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open committed dtype dataset "/uncopied/src_ndt_dset", get its datatype address */ + /* Open committed dtype dataset "/uncopied/src_ndt_dset", get its datatype token */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* check address of datatype for the copied dataset: "/src_ndt_dset" */ + /* check token of datatype for the copied dataset: "/src_ndt_dset" */ if((did = H5Dopen2(fid_dst, SRC_NDT_DSET, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12161,19 +12231,20 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* open the copied dataset: /uncopied/src_ndt_dset", get its address */ + /* open the copied dataset: /uncopied/src_ndt_dset", get its token */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* check address of datatype for the copied dataset: "/src_ndt_dset2" */ + /* check token of datatype for the copied dataset: "/src_ndt_dset2" */ if((did = H5Dopen2(fid_dst, SRC_NDT_DSET2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12199,19 +12270,20 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* open the copied dataset: "/src_ndt_dset", get its datatype address */ + /* open the copied dataset: "/src_ndt_dset", get its datatype token */ if((did = H5Dopen2(fid_dst, SRC_NDT_DSET, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* check address of datatype for the copied dataset: /uncopied/src_ndt_dset2 */ + /* check token of datatype for the copied dataset: /uncopied/src_ndt_dset2 */ if((did = H5Dopen2(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12279,8 +12351,8 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* * Populate source file @@ -12544,7 +12616,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* open committed dtype "/dst_grp/dst_dt_int", get its address */ + /* open committed dtype "/dst_grp/dst_dt_int", get its token */ if((exp_tid = H5Topen2(fid_dst, "/" DST_GRP "/" DST_NDT_INT, H5P_DEFAULT)) < 0) TEST_ERROR /* open datatype of dataset */ @@ -12637,7 +12709,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((aid = H5Aopen_by_name(fid_dst, DST_NDT_DOUBLE, DST_ATTR, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR if((exp_tid = H5Aget_type(aid)) < 0) TEST_ERROR - /* Open datatype of dataset, check address */ + /* Open datatype of dataset, check token */ if((did = H5Dopen2(fid_dst, "A_src_dset", H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR @@ -12674,7 +12746,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* open committed dtype "/dst_ndt_short" */ if((exp_tid = H5Topen2(fid_dst, "/" DST_NDT_SHORT, H5P_DEFAULT)) < 0) TEST_ERROR - /* open datatype of dataset, check address */ + /* open datatype of dataset, check token */ if((did = H5Dopen2(fid_dst, "B_src_dset", H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR @@ -12756,11 +12828,12 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, unsigned int i; /* Local index variables */ hsize_t dim1d[1]; /* Dataset dimensions */ int buf[DIM_SIZE_1]; /* Buffer for writing data */ - H5O_info_t oinfo; /* Object info */ - haddr_t exp_addr; /* Expected object address */ + H5O_info2_t oinfo; /* Object info */ + H5O_token_t exp_token; /* Expected object token */ char src_filename[NAME_BUF_SIZE]; char dst_filename[NAME_BUF_SIZE]; mcdt_search_cb_ud cb_udata; /* User data for callback */ + int token_cmp; if(reopen) TESTING("H5Ocopy(): H5Pset_mcdt_search_cb and reopen") @@ -12775,8 +12848,8 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -12868,17 +12941,18 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open committed dtype "b", get address */ + /* Open committed dtype "b", get token */ if((tid = H5Topen2(fid_dst, "/b", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open dset dtype, check address */ + /* Open dset dtype, check token */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12916,17 +12990,18 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open committed dtype "a", get address */ + /* Open committed dtype "a", get token */ if((tid = H5Topen2(fid_dst, "/a", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open copied dataset and its dtype, check address */ + /* Open copied dataset and its dtype, check token */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE2, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr != exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -12955,31 +13030,33 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open committed dtype "a", get address */ + /* Open committed dtype "a", get token */ if((tid = H5Topen2(fid_dst, "/a", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open the copied dataset and get its dtype, addresses should not be equal */ + /* Open the copied dataset and get its dtype, tokens should not be equal */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr == exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(!token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open committed dtype "b", get address */ + /* Open committed dtype "b", get token */ if((tid = H5Topen2(fid_dst, "/b", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open the copied dataset and get its dtype, addresses should not be equal */ + /* Open the copied dataset and get its dtype, tokens should not be equal */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr == exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(!token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -13015,31 +13092,33 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDONLY, dst_fapl)) < 0) TEST_ERROR } /* end if */ - /* Open committed dtype "a", get address */ + /* Open committed dtype "a", get token */ if((tid = H5Topen2(fid_dst, "/a", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open the copied dataset and get its dtype, addresses should not be equal */ + /* Open the copied dataset and get its dtype, tokens should not be equal */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr == exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(!token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR - /* Open committed dtype "b", get address */ + /* Open committed dtype "b", get token */ if((tid = H5Topen2(fid_dst, "/b", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - exp_addr = oinfo.addr; + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + HDmemcpy(&exp_token, &oinfo.token, sizeof(exp_token)); if(H5Tclose(tid) < 0) TEST_ERROR - /* Open the copied dataset and get its dtype, addresses should not be equal */ + /* Open the copied dataset and get its dtype, tokens should not be equal */ if((did = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE3, H5P_DEFAULT)) < 0) TEST_ERROR if((tid = H5Dget_type(did)) < 0) TEST_ERROR - if(H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR - if(oinfo.addr == exp_addr) TEST_ERROR + if(H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(tid, &oinfo.token, &exp_token, &token_cmp) < 0) TEST_ERROR + if(!token_cmp) TEST_ERROR if(H5Tclose(tid) < 0) TEST_ERROR if(H5Dclose(did) < 0) TEST_ERROR @@ -13134,8 +13213,8 @@ test_copy_set_get_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -13382,7 +13461,7 @@ error: */ static herr_t test_copy_iterate_cb(hid_t loc_id, const char *name, - const H5L_info_t H5_ATTR_UNUSED *link_info, void *op_data) + const H5L_info2_t H5_ATTR_UNUSED *link_info, void *op_data) { hid_t dst_loc_id = *((hid_t *)op_data); @@ -13411,8 +13490,8 @@ test_copy_iterate(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], src_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* Create source file */ if((fid1 = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) @@ -13442,8 +13521,7 @@ test_copy_iterate(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl /* Iterate over links in the root group, copying each object */ if((gid = H5Gopen2(fid1, "/", H5P_DEFAULT)) < 0) TEST_ERROR - if(H5Literate(gid, H5_INDEX_NAME, H5_ITER_INC, NULL, test_copy_iterate_cb, - &fid2) < 0) + if(H5Literate2(gid, H5_INDEX_NAME, H5_ITER_INC, NULL, test_copy_iterate_cb, &fid2) < 0) TEST_ERROR /* Close */ @@ -13506,8 +13584,8 @@ test_copy_option(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -13641,7 +13719,7 @@ test_copy_option(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl, /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR @@ -13827,8 +13905,8 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -13836,7 +13914,7 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR /* Set dataspace dimensions */ @@ -14373,8 +14451,8 @@ main(void) */ } /* end for */ - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* Verify symbol table messages are cached */ nerrors += (h5_verify_cached_stabs(FILENAME, fapl) < 0 ? 1 : 0); diff --git a/test/objcopy_ref.c b/test/objcopy_ref.c index 4637f23..20c6138 100644 --- a/test/objcopy_ref.c +++ b/test/objcopy_ref.c @@ -72,9 +72,9 @@ unsigned num_attributes_g; /* Number of attributes created */ /* Table containing object id and object name */ /* (Used for detecting duplicate objects when comparing groups */ static struct { - size_t nalloc; /* number of slots allocated */ - size_t nobjs; /* number of objects */ - haddr_t *obj; /* Addresses of objects seen */ + size_t nalloc; /* number of slots allocated */ + size_t nobjs; /* number of objects */ + H5O_token_t *obj; /* tokens for objects seen */ } idtab_g; /* Local function prototypes */ @@ -87,9 +87,9 @@ static int compare_groups(hid_t gid, hid_t gid2, hid_t pid, int depth, unsigned copy_flags); /*------------------------------------------------------------------------- - * Function: addr_insert + * Function: token_insert * - * Purpose: Add an address to the table. + * Purpose: Add a token to the table. * * Return: void * @@ -99,31 +99,31 @@ compare_groups(hid_t gid, hid_t gid2, hid_t pid, int depth, unsigned copy_flags) *------------------------------------------------------------------------- */ static void -addr_insert(H5O_info_t *oi) +token_insert(H5O_info2_t *oinfo) { size_t n; /* Don't add it if the link count is 1 because such an object can only * be encountered once. */ - if(oi->rc < 2) + if(oinfo->rc < 2) return; /* Extend the table */ if(idtab_g.nobjs >= idtab_g.nalloc) { - idtab_g.nalloc = MAX(256, 2*idtab_g.nalloc); - idtab_g.obj = (haddr_t *)HDrealloc(idtab_g.obj, idtab_g.nalloc * sizeof(idtab_g.obj[0])); - } /* end if */ + idtab_g.nalloc = MAX(256, 2 * idtab_g.nalloc); + idtab_g.obj = (H5O_token_t *)HDrealloc(idtab_g.obj, idtab_g.nalloc * sizeof(idtab_g.obj[0])); + } /* Insert the entry */ n = idtab_g.nobjs++; - idtab_g.obj[n] = oi->addr; -} /* end addr_insert() */ + idtab_g.obj[n] = oinfo->token; +} /* end token_insert() */ /*------------------------------------------------------------------------- - * Function: addr_lookup + * Function: token_lookup * - * Purpose: Check if address has already been encountered + * Purpose: Check if a token has already been encountered * * Return: Success: TRUE/FALSE * Failure: (can't fail) @@ -134,24 +134,29 @@ addr_insert(H5O_info_t *oi) *------------------------------------------------------------------------- */ static H5_ATTR_PURE hbool_t -addr_lookup(H5O_info_t *oi) +token_lookup(hid_t loc_id, H5O_info2_t *oinfo) { - size_t n; + size_t n; + int token_cmp; - if(oi->rc < 2) return FALSE; /*only one link possible*/ + if(oinfo->rc < 2) + return FALSE; /*only one link possible*/ - for(n = 0; n < idtab_g.nobjs; n++) - if(H5F_addr_eq(idtab_g.obj[n], oi->addr)) + for(n = 0; n < idtab_g.nobjs; n++) { + if(H5Otoken_cmp(loc_id, &(idtab_g.obj[n]), &oinfo->token, &token_cmp) < 0) + return FALSE; + if(0 == token_cmp) return TRUE; + } return FALSE; -} /* end addr_lookup() */ +} /* end token_lookup() */ /*------------------------------------------------------------------------- - * Function: addr_reset + * Function: token_reset * - * Purpose: Reset the address tracking data structures + * Purpose: Reset the token tracking data structures * * Return: void * @@ -161,13 +166,13 @@ addr_lookup(H5O_info_t *oi) *------------------------------------------------------------------------- */ static void -addr_reset(void) +token_reset(void) { if(idtab_g.obj) HDfree(idtab_g.obj); idtab_g.obj = NULL; idtab_g.nalloc = idtab_g.nobjs = 0; -} /* end addr_reset() */ +} /* end token_reset() */ /*------------------------------------------------------------------------- @@ -625,7 +630,7 @@ static int compare_std_attributes(hid_t oid, hid_t oid2, hid_t pid) { hid_t aid = -1, aid2 = -1; /* Attribute IDs */ - H5O_info_t oinfo1, oinfo2; /* Object info */ + H5O_info2_t oinfo1, oinfo2; /* Object info */ unsigned cpy_flags; /* Object copy flags */ /* Retrieve the object copy flags from the property list, if it's non-DEFAULT */ @@ -636,10 +641,10 @@ compare_std_attributes(hid_t oid, hid_t oid2, hid_t pid) cpy_flags = 0; /* Check the number of attributes on source dataset */ - if(H5Oget_info2(oid, &oinfo1, H5O_INFO_NUM_ATTRS) < 0) TEST_ERROR + if(H5Oget_info3(oid, &oinfo1, H5O_INFO_NUM_ATTRS) < 0) TEST_ERROR /* Check the number of attributes on destination dataset */ - if(H5Oget_info2(oid2, &oinfo2, H5O_INFO_NUM_ATTRS) < 0) TEST_ERROR + if(H5Oget_info3(oid2, &oinfo2, H5O_INFO_NUM_ATTRS) < 0) TEST_ERROR if(cpy_flags & H5O_COPY_WITHOUT_ATTR_FLAG) { /* Check that the destination has no attributes */ @@ -808,11 +813,11 @@ compare_data(hid_t parent1, hid_t parent2, hid_t pid, hid_t tid, size_t nelmts, /* Check for object or region reference */ if(H5Tequal(tid, H5T_STD_REF) > 0) { - const H5R_ref_t *ref_buf1, *ref_buf2; /* Aliases for buffers to compare */ + H5R_ref_t *ref_buf1, *ref_buf2; /* Aliases for buffers to compare */ /* Loop over elements in buffers */ - ref_buf1 = (const H5R_ref_t *)buf1; - ref_buf2 = (const H5R_ref_t *)buf2; + ref_buf1 = (H5R_ref_t *)buf1; + ref_buf2 = (H5R_ref_t *)buf2; for(u = 0; u < nelmts; u++, ref_buf1++, ref_buf2++) { hid_t obj1_id, obj2_id; /* IDs for objects referenced */ H5O_type_t obj1_type, obj2_type; /* Types of objects referenced */ @@ -828,11 +833,13 @@ compare_data(hid_t parent1, hid_t parent2, hid_t pid, hid_t tid, size_t nelmts, /* break the infinite loop when the ref_object points to itself */ if(obj_owner > 0) { - H5O_info_t oinfo1, oinfo2; + H5O_info2_t oinfo1, oinfo2; + int token_cmp; - if(H5Oget_info2(obj_owner, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5Oget_info2(obj1_id, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR - if(H5F_addr_eq(oinfo1.addr, oinfo2.addr)) { + if(H5Oget_info3(obj_owner, &oinfo1, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Oget_info3(obj1_id, &oinfo2, H5O_INFO_BASIC) < 0) TEST_ERROR + if(H5Otoken_cmp(obj1_id, &oinfo1.token, &oinfo2.token, &token_cmp) < 0) TEST_ERROR + if(0 == token_cmp) { if(H5Oclose(obj1_id) < 0) TEST_ERROR if(H5Oclose(obj2_id) < 0) TEST_ERROR return TRUE; @@ -1110,8 +1117,8 @@ compare_groups(hid_t gid, hid_t gid2, hid_t pid, int depth, unsigned copy_flags) if(ginfo2.nlinks > 0) { char objname[NAME_BUF_SIZE]; /* Name of object in group */ char objname2[NAME_BUF_SIZE]; /* Name of object in group */ - H5L_info_t linfo; /* Link information */ - H5L_info_t linfo2; /* Link information */ + H5L_info2_t linfo; /* Link information */ + H5L_info2_t linfo2; /* Link information */ /* Loop over contents of groups */ for(idx = 0; idx < ginfo.nlinks; idx++) { @@ -1121,18 +1128,24 @@ compare_groups(hid_t gid, hid_t gid2, hid_t pid, int depth, unsigned copy_flags) if(HDstrcmp(objname, objname2)) TEST_ERROR /* Get link info */ - if(H5Lget_info(gid, objname, &linfo, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Lget_info(gid2, objname2, &linfo2, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(gid, objname, &linfo, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Lget_info2(gid2, objname2, &linfo2, H5P_DEFAULT) < 0) TEST_ERROR if(linfo.type != linfo2.type) TEST_ERROR /* Extra checks for "real" objects */ if(linfo.type == H5L_TYPE_HARD) { - hid_t oid, oid2; /* IDs of objects within group */ - H5O_info_t oinfo, oinfo2; /* Object info */ + hid_t oid, oid2; /* IDs of objects within group */ + H5O_info2_t oinfo, oinfo2; /* Data model object info */ + H5O_native_info_t ninfo, ninfo2; /* Native file format object info */ /* Compare some pieces of the object info */ - if(H5Oget_info_by_name2(gid, objname, &oinfo, H5O_INFO_BASIC|H5O_INFO_HDR, H5P_DEFAULT) < 0) TEST_ERROR - if(H5Oget_info_by_name2(gid2, objname2, &oinfo2, H5O_INFO_BASIC|H5O_INFO_HDR, H5P_DEFAULT) < 0) TEST_ERROR + /* Get data model object info */ + if(H5Oget_info_by_name3(gid, objname, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_info_by_name3(gid2, objname2, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) TEST_ERROR + + /* Get native object info */ + if(H5Oget_native_info_by_name(gid, objname, &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Oget_native_info_by_name(gid2, objname2, &ninfo2, H5O_NATIVE_INFO_HDR, H5P_DEFAULT) < 0) TEST_ERROR if(oinfo.type != oinfo2.type) TEST_ERROR if(oinfo.rc != oinfo2.rc) TEST_ERROR @@ -1143,17 +1156,18 @@ compare_groups(hid_t gid, hid_t gid2, hid_t pid, int depth, unsigned copy_flags) * of messages hasn't increased. */ if(H5O_COPY_PRESERVE_NULL_FLAG & copy_flags) { - if(oinfo.hdr.nmesgs != oinfo2.hdr.nmesgs) + if(ninfo.hdr.nmesgs != ninfo2.hdr.nmesgs) ; else - if(oinfo.hdr.nmesgs < oinfo2.hdr.nmesgs) TEST_ERROR + if(ninfo.hdr.nmesgs < ninfo2.hdr.nmesgs) + TEST_ERROR } /* Check for object already having been compared */ - if(addr_lookup(&oinfo)) + if(token_lookup(gid, &oinfo)) continue; else - addr_insert(&oinfo); + token_insert(&oinfo); /* Open objects */ if((oid = H5Oopen(gid, objname, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR @@ -1269,8 +1283,8 @@ test_copy_option(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl, h5_fixname(FILENAME[0], src_fapl, src_filename, sizeof src_filename); h5_fixname(FILENAME[1], dst_fapl, dst_filename, sizeof dst_filename); - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -1404,7 +1418,7 @@ test_copy_option(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl, /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR - /* Create an uncopied object in destination file so that addresses in source and destination + /* Create an uncopied object in destination file so that tokens in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR @@ -1636,8 +1650,8 @@ main(void) FALSE, "H5Ocopy(): expand object reference"); } /* end for */ - /* Reset file address checking info */ - addr_reset(); + /* Reset file token checking info */ + token_reset(); /* Verify symbol table messages are cached */ nerrors += (h5_verify_cached_stabs(FILENAME, fapl) < 0 ? 1 : 0); diff --git a/test/ohdr.c b/test/ohdr.c index 53d2f59..120935c 100644 --- a/test/ohdr.c +++ b/test/ohdr.c @@ -322,7 +322,7 @@ test_ohdr_swmr(hbool_t new_format) hsize_t dims[1]; /* Dimension sizes */ size_t u; /* Iterator */ int n; /* Data variable */ - H5O_info_t obj_info; /* Information for the object */ + H5O_native_info_t ninfo; /* Information for the object */ if(new_format) { TESTING("exercise the coding for the re-read of the object header for SWMR access: latest-format"); @@ -392,16 +392,16 @@ test_ohdr_swmr(hbool_t new_format) FAIL_STACK_ERROR /* Get the object information */ - if(H5Oget_info2(did, &obj_info, H5O_INFO_HDR) < 0) + if(H5Oget_native_info(did, &ninfo, H5O_NATIVE_INFO_HDR) < 0) FAIL_STACK_ERROR if(new_format) - if(obj_info.hdr.version != OBJ_VERSION_LATEST) + if(ninfo.hdr.version != OBJ_VERSION_LATEST) FAIL_STACK_ERROR /* The size of object header should be greater than the speculative read size of H5O_SPEC_READ_SIZE */ /* This will exercise the coding for the re-read of the object header for SWMR access */ - if(obj_info.hdr.space.total < H5O_SPEC_READ_SIZE) + if(ninfo.hdr.space.total < H5O_SPEC_READ_SIZE) TEST_ERROR; /* Close the dataset */ @@ -757,10 +757,10 @@ error: */ static int count_attributes(hid_t dset_id) -{ - H5O_info_t info; - - if(H5Oget_info2(dset_id, &info, H5O_INFO_NUM_ATTRS) < 0) +{ + H5O_info2_t info; + + if(H5Oget_info3(dset_id, &info, H5O_INFO_NUM_ATTRS) < 0) return -1; else return (int)info.num_attrs; /* should never exceed int bounds */ @@ -774,10 +774,13 @@ count_attributes(hid_t dset_id) static herr_t _oh_getsize(hid_t did, hsize_t *size_out) { - H5O_info_t info; - if(FAIL == H5Oget_info2(did, &info, H5O_INFO_HDR)) + H5O_native_info_t ninfo; + + if(FAIL == H5Oget_native_info(did, &ninfo, H5O_NATIVE_INFO_HDR)) return FAIL; - *size_out = info.hdr.space.total; + + *size_out = ninfo.hdr.space.total; + return SUCCEED; } /* _oh_getsize */ diff --git a/test/page_buffer.c b/test/page_buffer.c index 5313c9b..21ffbf5 100644 --- a/test/page_buffer.c +++ b/test/page_buffer.c @@ -38,23 +38,25 @@ #define FILENAME_LEN 1024 + +/* test routines */ +#ifdef H5_HAVE_PARALLEL +static unsigned verify_page_buffering_disabled(hid_t orig_fapl, + const char *env_h5_drvr); +#else #define NUM_DSETS 5 #define NX 100 #define NY 50 -/* helper routines */ -static unsigned create_file(char *filename, hid_t fcpl, hid_t fapl); -static unsigned open_file(char *filename, hid_t fapl, hsize_t page_size, size_t page_buffer_size); - -/* test routines */ static unsigned test_args(hid_t fapl, const char *env_h5_drvr); static unsigned test_raw_data_handling(hid_t orig_fapl, const char *env_h5_drvr); static unsigned test_lru_processing(hid_t orig_fapl, const char *env_h5_drvr); static unsigned test_min_threshold(hid_t orig_fapl, const char *env_h5_drvr); static unsigned test_stats_collection(hid_t orig_fapl, const char *env_h5_drvr); -#ifdef H5_HAVE_PARALLEL -static unsigned verify_page_buffering_disabled(hid_t orig_fapl, - const char *env_h5_drvr); + +/* helper routines */ +static unsigned create_file(char *filename, hid_t fcpl, hid_t fapl); +static unsigned open_file(char *filename, hid_t fapl, hsize_t page_size, size_t page_buffer_size); #endif /* H5_HAVE_PARALLEL */ const char *FILENAME[] = { @@ -62,6 +64,7 @@ const char *FILENAME[] = { NULL }; +#ifndef H5_HAVE_PARALLEL /*------------------------------------------------------------------------- * Function: create_file() @@ -296,6 +299,7 @@ error: } H5E_END_TRY; return 1; } +#endif /* H5_HAVE_PARALLEL */ /* * @@ -357,6 +361,7 @@ error: } /* set_multi_split() */ +#ifndef H5_HAVE_PARALLEL /*------------------------------------------------------------------------- * Function: test_args() @@ -379,6 +384,7 @@ error: * *------------------------------------------------------------------------- */ + static unsigned test_args(hid_t orig_fapl, const char *env_h5_drvr) { @@ -2002,6 +2008,7 @@ error: return 1; } /* test_stats_collection */ +#endif /* #ifndef H5_HAVE_PARALLEL */ /*------------------------------------------------------------------------- diff --git a/test/stab.c b/test/stab.c index 80c8b06..215d748 100644 --- a/test/stab.c +++ b/test/stab.c @@ -70,8 +70,10 @@ const char *FILENAME[] = { #define GCPL_ON_ROOT_MAX_COMPACT 4 #define GCPL_ON_ROOT_MIN_DENSE 2 +#ifndef H5_NO_DEPRECATED_SYMBOLS /* Definitions for 'old_api' test */ #define OLD_API_GROUP "/old_api" +#endif /* H5_NO_DEPRECATED_SYMBOLS */ /* Definitions for 'corrupt_stab_msg' test */ #define CORRUPT_STAB_FILE "corrupt_stab_msg.h5" @@ -328,7 +330,7 @@ lifecycle(hid_t fcpl, hid_t fapl2) unsigned est_num_entries; /* Estimated # of entries in group */ unsigned est_name_len; /* Estimated length of entry name */ unsigned nmsgs; /* Number of messages in group's header */ - H5O_info_t oinfo; /* Object info */ + H5O_native_info_t ninfo; /* Object info */ char objname[NAME_BUF_SIZE]; /* Object name */ char filename[NAME_BUF_SIZE]; h5_stat_size_t empty_size; /* Size of an empty file */ @@ -419,11 +421,11 @@ lifecycle(hid_t fcpl, hid_t fapl2) if(H5G__is_new_dense_test(gid) != FALSE) TEST_ERROR /* Check that the object header is only one chunk and the space has been allocated correctly */ - if(H5Oget_info2(gid, &oinfo, H5O_INFO_HDR) < 0) TEST_ERROR - if(oinfo.hdr.space.total != 151) TEST_ERROR - if(oinfo.hdr.space.free != 0) TEST_ERROR - if(oinfo.hdr.nmesgs != 6) TEST_ERROR - if(oinfo.hdr.nchunks != 1) TEST_ERROR + if(H5Oget_native_info(gid, &ninfo, H5O_NATIVE_INFO_HDR) < 0) TEST_ERROR + if(ninfo.hdr.space.total != 151) TEST_ERROR + if(ninfo.hdr.space.free != 0) TEST_ERROR + if(ninfo.hdr.nmesgs != 6) TEST_ERROR + if(ninfo.hdr.nchunks != 1) TEST_ERROR /* Create one more "bottom" group, which should push top group into using a symbol table */ HDsprintf(objname, LIFECYCLE_BOTTOM_GROUP, u); @@ -441,11 +443,11 @@ lifecycle(hid_t fcpl, hid_t fapl2) if(H5G__is_new_dense_test(gid) != TRUE) TEST_ERROR /* Check that the object header is still one chunk and the space has been allocated correctly */ - if(H5Oget_info2(gid, &oinfo, H5O_INFO_HDR) < 0) TEST_ERROR - if(oinfo.hdr.space.total != 151) TEST_ERROR - if(oinfo.hdr.space.free != 92) TEST_ERROR - if(oinfo.hdr.nmesgs != 3) TEST_ERROR - if(oinfo.hdr.nchunks != 1) TEST_ERROR + if(H5Oget_native_info(gid, &ninfo, H5O_NATIVE_INFO_HDR) < 0) TEST_ERROR + if(ninfo.hdr.space.total != 151) TEST_ERROR + if(ninfo.hdr.space.free != 92) TEST_ERROR + if(ninfo.hdr.nmesgs != 3) TEST_ERROR + if(ninfo.hdr.nchunks != 1) TEST_ERROR /* Unlink objects from top group */ while(u >= LIFECYCLE_MIN_DENSE) { diff --git a/test/swmr_common.c b/test/swmr_common.c index b323769..925dc33 100644 --- a/test/swmr_common.c +++ b/test/swmr_common.c @@ -26,7 +26,8 @@ #include "h5test.h" #include "swmr_common.h" - +#include "vds_swmr.h" + /*******************/ /* Local Variables */ /*******************/ @@ -73,6 +74,27 @@ unsigned symbol_count[NLEVELS] = {100, 200, 400, 800, 1600}; /* Array of dataset information entries (1 per dataset) */ symbol_info_t *symbol_info[NLEVELS]; +hsize_t PLANES[N_SOURCES][RANK] = { + {1, SM_HEIGHT, WIDTH}, + {1, LG_HEIGHT, WIDTH}, + {1, SM_HEIGHT, WIDTH}, + {1, LG_HEIGHT, WIDTH}, + {1, SM_HEIGHT, WIDTH}, + {1, LG_HEIGHT, WIDTH} +}; + +char FILE_NAMES[N_SOURCES][NAME_LEN] = { + {"vds_swmr_src_a.h5"}, + {"vds_swmr_src_b.h5"}, + {"vds_swmr_src_c.h5"}, + {"vds_swmr_src_d.h5"}, + {"vds_swmr_src_e.h5"}, + {"vds_swmr_src_f.h5"} +}; + +char VDS_FILE_NAME[NAME_LEN] = "vds_swmr.h5"; +char SOURCE_DSET_PATH[NAME_LEN] = "/source_dset"; +char VDS_DSET_NAME[NAME_LEN] = "vds_dset"; /*------------------------------------------------------------------------- * Function: choose_dataset diff --git a/test/tattr.c b/test/tattr.c index b89ec3f..dab03a7 100644 --- a/test/tattr.c +++ b/test/tattr.c @@ -20,6 +20,7 @@ *************************************************************/ #include "testhdf5.h" +#include "H5VLnative_private.h" /* * This file needs to access private information from the H5O package. @@ -427,7 +428,7 @@ test_attr_basic_read(hid_t fapl) hid_t dataset; /* Dataset ID */ hid_t group; /* Group ID */ hid_t attr; /* Attribute ID */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ int read_data1[ATTR1_DIM1] = {0}; /* Buffer for reading 1st attribute */ int read_data2[ATTR2_DIM1][ATTR2_DIM2] = {{0}}; /* Buffer for reading 2nd attribute */ int i, j; /* Local index variables */ @@ -445,9 +446,9 @@ test_attr_basic_read(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 2, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 2, "H5Oget_info3"); /* Open first attribute for the dataset */ attr = H5Aopen(dataset, ATTR_TMP_NAME, H5P_DEFAULT); @@ -474,9 +475,9 @@ test_attr_basic_read(hid_t fapl) CHECK(group, FAIL, "H5Gopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(group, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 1, "H5Oget_info"); + ret = H5Oget_info3(group, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 1, "H5Oget_info3"); /* Open the attribute for the group */ attr = H5Aopen(group, ATTR2_NAME, H5P_DEFAULT); @@ -541,7 +542,7 @@ test_attr_flush(hid_t fapl) ret=H5Aread(att, H5T_NATIVE_DOUBLE, &rdata); CHECK(ret, FAIL, "H5Awrite"); - if(!H5_DBL_ABS_EQUAL(rdata, H5_DOUBLE(0.0))) + if(!H5_DBL_ABS_EQUAL(rdata, 0.0)) TestErrPrintf("attribute value wrong: rdata=%f, should be %f\n",rdata,(double)0.0F); ret=H5Fflush(fil, H5F_SCOPE_GLOBAL); @@ -550,7 +551,7 @@ test_attr_flush(hid_t fapl) ret=H5Aread(att, H5T_NATIVE_DOUBLE, &rdata); CHECK(ret, FAIL, "H5Awrite"); - if(!H5_DBL_ABS_EQUAL(rdata, H5_DOUBLE(0.0))) + if(!H5_DBL_ABS_EQUAL(rdata, 0.0)) TestErrPrintf("attribute value wrong: rdata=%f, should be %f\n",rdata,(double)0.0F); ret=H5Awrite(att, H5T_NATIVE_DOUBLE, &wdata); @@ -811,7 +812,7 @@ test_attr_compound_read(hid_t fapl) hid_t field; /* Attribute field datatype */ struct attr4_struct read_data4[ATTR4_DIM1][ATTR4_DIM2]; /* Buffer for reading 4th attribute */ ssize_t name_len; /* Length of attribute name */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ int i, j; /* Local index variables */ herr_t ret; /* Generic return value */ @@ -827,9 +828,9 @@ test_attr_compound_read(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 1, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 1, "H5Oget_info3"); /* Open 1st attribute for the dataset */ attr = H5Aopen_by_idx(dataset, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, H5P_DEFAULT, H5P_DEFAULT); @@ -1016,7 +1017,7 @@ test_attr_scalar_read(hid_t fapl) hid_t attr; /* Attribute ID */ H5S_class_t stype; /* Dataspace class */ float rdata = 0.0F; /* Buffer for reading 1st attribute */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ herr_t ret; /* Generic return value */ /* Output message about test being performed */ @@ -1031,9 +1032,9 @@ test_attr_scalar_read(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 1, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 1, "H5Oget_info3"); /* Open an attribute for the dataset */ attr = H5Aopen(dataset, ATTR5_NAME, H5P_DEFAULT); @@ -1218,7 +1219,7 @@ test_attr_mult_read(hid_t fapl) int read_data2[ATTR2_DIM1][ATTR2_DIM2] = {{0}}; /* Buffer for reading 2nd attribute */ double read_data3[ATTR3_DIM1][ATTR3_DIM2][ATTR3_DIM3] = {{{0}}}; /* Buffer for reading 3rd attribute */ ssize_t name_len; /* Length of attribute name */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ int i, j, k; /* Local index values */ herr_t ret; /* Generic return value */ @@ -1234,9 +1235,9 @@ test_attr_mult_read(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 3, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 3, "H5Oget_info3"); /* Open 1st attribute for the dataset */ attr = H5Aopen_by_idx(dataset, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, H5P_DEFAULT, H5P_DEFAULT); @@ -1468,7 +1469,7 @@ test_attr_iterate(hid_t fapl) hid_t dataset; /* Dataset ID */ hid_t sid; /* Dataspace ID */ int count; /* operator data for the iterator */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ herr_t ret; /* Generic return value */ /* Output message about test being performed */ @@ -1491,9 +1492,9 @@ test_attr_iterate(hid_t fapl) CHECK(ret, FAIL, "H5Sclose"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 0, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 0, "H5Oget_info3"); /* Iterate over attributes on dataset */ count = 0; @@ -1509,9 +1510,9 @@ test_attr_iterate(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 3, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 3, "H5Oget_info3"); /* Iterate over attributes on dataset */ count = 0; @@ -1541,7 +1542,7 @@ test_attr_delete(hid_t fapl) hid_t attr; /* Attribute ID */ char attr_name[ATTR_NAME_LEN]; /* Buffer for attribute names */ ssize_t name_len; /* Length of attribute name */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ herr_t ret; /* Generic return value */ /* Output message about test being performed */ @@ -1556,27 +1557,27 @@ test_attr_delete(hid_t fapl) CHECK(dataset, FAIL, "H5Dopen2"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 3, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 3, "H5Oget_info3"); /* Try to delete bogus attribute */ ret = H5Adelete(dataset, "Bogus"); VERIFY(ret, FAIL, "H5Adelete"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 3, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 3, "H5Oget_info3"); /* Delete middle (2nd) attribute */ ret = H5Adelete(dataset, ATTR2_NAME); CHECK(ret, FAIL, "H5Adelete"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 2, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 2, "H5Oget_info3"); /* Open 1st attribute for the dataset */ attr = H5Aopen_by_idx(dataset, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, H5P_DEFAULT, H5P_DEFAULT); @@ -1611,9 +1612,9 @@ test_attr_delete(hid_t fapl) CHECK(ret, FAIL, "H5Adelete"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 1, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 1, "H5Oget_info3"); /* Open last (formally 3rd) attribute for the dataset */ attr = H5Aopen_by_idx(dataset, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, H5P_DEFAULT, H5P_DEFAULT); @@ -1634,9 +1635,9 @@ test_attr_delete(hid_t fapl) CHECK(ret, FAIL, "H5Adelete"); /* Verify the correct number of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, 0, "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, 0, "H5Oget_info3"); /* Close dataset */ ret = H5Dclose(dataset); @@ -1664,7 +1665,7 @@ test_attr_dtype_shared(hid_t fapl) hid_t attr_id; /* Attribute ID */ int data = 8; /* Data to write */ int rdata = 0; /* Read read in */ - H5O_info_t oinfo; /* Object's information */ + H5O_info2_t oinfo; /* Object's information */ h5_stat_size_t empty_filesize; /* Size of empty file */ h5_stat_size_t filesize; /* Size of file after modifications */ herr_t ret; /* Generic return value */ @@ -1698,9 +1699,9 @@ test_attr_dtype_shared(hid_t fapl) CHECK(ret, FAIL, "H5Tcommit2"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "H5Oget_info_by_name3"); /* Create dataspace for dataset */ space_id = H5Screate(H5S_SCALAR); @@ -1711,18 +1712,18 @@ test_attr_dtype_shared(hid_t fapl) CHECK(dset_id, FAIL, "H5Dcreate2"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 2, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 2, "H5Oget_info_by_name3"); /* Create attribute on dataset */ attr_id = H5Acreate2(dset_id, ATTR1_NAME, type_id, space_id, H5P_DEFAULT, H5P_DEFAULT); CHECK(attr_id, FAIL, "H5Acreate2"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 3, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 3, "H5Oget_info_by_name3"); /* Close attribute */ ret = H5Aclose(attr_id); @@ -1733,18 +1734,18 @@ test_attr_dtype_shared(hid_t fapl) CHECK(ret, FAIL, "H5Adelete"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 2, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 2, "H5Oget_info_by_name3"); /* Create attribute on dataset */ attr_id = H5Acreate2(dset_id, ATTR1_NAME, type_id, space_id, H5P_DEFAULT, H5P_DEFAULT); CHECK(attr_id, FAIL, "H5Acreate2"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 3, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 3, "H5Oget_info_by_name3"); /* Write data into the attribute */ ret = H5Awrite(attr_id, H5T_NATIVE_INT, &data); @@ -1797,18 +1798,18 @@ test_attr_dtype_shared(hid_t fapl) CHECK(ret, FAIL, "H5Dclose"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 3, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 3, "H5Oget_info_by_name3"); /* Unlink the dataset */ ret = H5Ldelete(file_id, DSET1_NAME, H5P_DEFAULT); CHECK(ret, FAIL, "H5Ldelete"); /* Check reference count on named datatype */ - ret = H5Oget_info_by_name2(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(file_id, TYPE1_NAME, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "H5Oget_info_by_name3"); /* Unlink the named datatype */ ret = H5Ldelete(file_id, TYPE1_NAME, H5P_DEFAULT); @@ -2440,7 +2441,7 @@ test_attr_dense_delete(hid_t fcpl, hid_t fapl) unsigned u; /* Local index variable */ h5_stat_size_t empty_filesize; /* Size of empty file */ h5_stat_size_t filesize; /* Size of file after modifications */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ int use_min_dset_oh = (dcpl_g != H5P_DEFAULT); herr_t ret; /* Generic return value */ @@ -2523,9 +2524,9 @@ test_attr_dense_delete(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Aclose"); /* Check # of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, (u + 1), "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, (u + 1), "H5Oget_info3"); } /* end for */ /* Check on dataset's attribute storage status */ @@ -2634,7 +2635,7 @@ test_attr_dense_rename(hid_t fcpl, hid_t fapl) htri_t is_dense; /* Are attributes stored densely? */ h5_stat_size_t empty_filesize; /* Size of empty file */ h5_stat_size_t filesize; /* Size of file after modifications */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ unsigned u; /* Local index variable */ int use_min_dset_oh = (dcpl_g != H5P_DEFAULT); unsigned use_corder; /* Track creation order or not */ @@ -2726,9 +2727,9 @@ test_attr_dense_rename(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Arename_by_name"); /* Check # of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, (u + 1), "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, (u + 1), "H5Oget_info3"); } /* end for */ /* Check on dataset's attribute storage status */ @@ -2826,7 +2827,7 @@ test_attr_dense_unlink(hid_t fcpl, hid_t fapl) size_t mesg_count; /* # of shared messages */ h5_stat_size_t empty_filesize; /* Size of empty file */ h5_stat_size_t filesize; /* Size of file after modifications */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ unsigned u; /* Local index variable */ int use_min_dset_oh = (dcpl_g != H5P_DEFAULT); herr_t ret; /* Generic return value */ @@ -2904,9 +2905,9 @@ test_attr_dense_unlink(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Aclose"); /* Check # of attributes */ - ret = H5Oget_info2(dataset, &oinfo, H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.num_attrs, (u + 1), "H5Oget_info"); + ret = H5Oget_info3(dataset, &oinfo, H5O_INFO_NUM_ATTRS); + CHECK(ret, FAIL, "H5Oget_info3"); + VERIFY(oinfo.num_attrs, (u + 1), "H5Oget_info3"); } /* end for */ /* Check on dataset's attribute storage status */ @@ -10863,9 +10864,10 @@ test_attr_bug8(hid_t fcpl, hid_t fapl) hid_t gid; /* Group ID */ hid_t oid; /* Object ID */ hsize_t dims = 256; /* Attribute dimensions */ - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ H5A_info_t ainfo; /* Attribute info */ haddr_t root_addr; /* Root group address */ + haddr_t link_addr; /* Link (to root group) address */ herr_t ret; /* Generic return status */ /* Output message about test being performed */ @@ -10881,9 +10883,10 @@ test_attr_bug8(hid_t fcpl, hid_t fapl) CHECK(gid, FAIL, "H5Gcreate2"); /* Get root group address */ - ret = H5Oget_info2(fid, &oinfo, H5O_INFO_BASIC); + ret = H5Oget_info3(fid, &oinfo, H5O_INFO_BASIC); CHECK(ret, FAIL, "H5Oget_info"); - root_addr = oinfo.addr; + ret = H5VLnative_token_to_addr(fid, oinfo.token, &root_addr); + CHECK(ret, FAIL, "H5VLnative_token_to_addr"); /* * Create link to root group @@ -10906,10 +10909,12 @@ test_attr_bug8(hid_t fcpl, hid_t fapl) CHECK(gid, FAIL, "H5Gopen2"); oid = H5Oopen(gid, LINK1_NAME, H5P_DEFAULT); CHECK(oid, FAIL, "H5Oopen"); - ret = H5Oget_info2(oid, &oinfo, H5O_INFO_BASIC); + ret = H5Oget_info3(oid, &oinfo, H5O_INFO_BASIC); CHECK(ret, FAIL, "H5Oget_info"); - if(oinfo.addr != root_addr) - TestErrPrintf("incorrect link target address: addr: %llu, expected: %llu\n", (long long unsigned)oinfo.addr, (long long unsigned)root_addr); + ret = H5VLnative_token_to_addr(fid, oinfo.token, &link_addr); + CHECK(ret, FAIL, "H5VLnative_token_to_addr"); + if(link_addr != root_addr) + TestErrPrintf("incorrect link target address: addr: %llu, expected: %llu\n", (long long unsigned)link_addr, (long long unsigned)root_addr); /* Close file */ ret = H5Fclose(fid); @@ -10951,10 +10956,12 @@ test_attr_bug8(hid_t fcpl, hid_t fapl) CHECK(gid, FAIL, "H5Gopen2"); oid = H5Oopen(gid, LINK1_NAME, H5P_DEFAULT); CHECK(oid, FAIL, "H5Oopen"); - ret = H5Oget_info2(oid, &oinfo, H5O_INFO_BASIC); + ret = H5Oget_info3(oid, &oinfo, H5O_INFO_BASIC); CHECK(ret, FAIL, "H5Oget_info"); - if(oinfo.addr != root_addr) - TestErrPrintf("incorrect link target address: addr: %llu, expected: %llu\n", (long long unsigned)oinfo.addr, (long long unsigned)root_addr); + ret = H5VLnative_token_to_addr(fid, oinfo.token, &link_addr); + CHECK(ret, FAIL, "H5VLnative_token_to_addr"); + if(link_addr != root_addr) + TestErrPrintf("incorrect link target address: addr: %llu, expected: %llu\n", (long long unsigned)link_addr, (long long unsigned)root_addr); ret = H5Aget_info_by_name(gid, ".", ATTR1_NAME, &ainfo, H5P_DEFAULT); CHECK(ret, FAIL, "H5Aget_info_by_name"); if(ainfo.data_size != dims) diff --git a/test/tfile.c b/test/tfile.c index 7da8b85..d6047dc 100644 --- a/test/tfile.c +++ b/test/tfile.c @@ -25,6 +25,7 @@ #include "H5Iprivate.h" #include "H5Pprivate.h" #include "H5VLprivate.h" /* Virtual Object Layer */ +#include "H5private.h" /* * This file needs to access private information from the H5F package. @@ -4208,7 +4209,7 @@ test_filespace_info(const char *env_h5_drvr) ** *****************************************************************/ static int -set_multi_split(hid_t fapl, hsize_t pagesize, hbool_t multi, hbool_t split) +set_multi_split(hid_t fapl, hsize_t pagesize, hbool_t split) { H5FD_mem_t memb_map[H5FD_MEM_NTYPES]; hid_t memb_fapl_arr[H5FD_MEM_NTYPES]; @@ -4217,7 +4218,7 @@ set_multi_split(hid_t fapl, hsize_t pagesize, hbool_t multi, hbool_t split) hbool_t relax; H5FD_mem_t mt; - HDassert(split || multi); + HDassert(split); HDmemset(memb_name, 0, sizeof memb_name); @@ -4308,7 +4309,7 @@ test_file_freespace(const char *env_h5_drvr) my_fapl = new_fapl; if(multi_vfd || split_vfd) { - ret = set_multi_split(new_fapl, FSP_SIZE_DEF, multi_vfd, split_vfd); + ret = set_multi_split(new_fapl, FSP_SIZE_DEF, split_vfd); CHECK(ret, FAIL, "set_multi_split"); } @@ -4474,7 +4475,7 @@ test_sects_freespace(const char *env_h5_drvr, hbool_t new_format) /* Set up paged aligned address space for multi/split driver */ if(multi_vfd || split_vfd) { - ret = set_multi_split(fapl, FSP_SIZE_DEF, multi_vfd, split_vfd); + ret = set_multi_split(fapl, FSP_SIZE_DEF, split_vfd); CHECK(ret, FAIL, "set_multi_split"); } @@ -5177,7 +5178,7 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, { hid_t file, group; /* Handles */ hid_t fapl; /* File access property list */ - H5O_info_t oinfo; /* Object info */ + H5O_native_info_t ninfo; /* Object info */ herr_t ret; /* Return value */ /* @@ -5195,9 +5196,9 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, /* * Make sure the root group has the correct object header version */ - ret = H5Oget_info_by_name2(file, "/", &oinfo, H5O_INFO_HDR, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.version, oh_vers_create, "H5Oget_info_by_name"); + ret = H5Oget_native_info_by_name(file, "/", &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.version, oh_vers_create, "H5Oget_native_info_by_name"); /* * Reopen the file and make sure the root group still has the correct version @@ -5211,9 +5212,9 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, file = H5Fopen("tfile5.h5", H5F_ACC_RDWR, fapl); CHECK(file, FAIL, "H5Fopen"); - ret = H5Oget_info_by_name2(file, "/", &oinfo, H5O_INFO_HDR, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.version, oh_vers_create, "H5Oget_info_by_name"); + ret = H5Oget_native_info_by_name(file, "/", &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.version, oh_vers_create, "H5Oget_native_info_by_name"); /* * Create a group named "G1" in the file, and make sure it has the correct @@ -5222,9 +5223,9 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, group = H5Gcreate2(file, "/G1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); CHECK(group, FAIL, "H5Gcreate"); - ret = H5Oget_info2(group, &oinfo, H5O_INFO_HDR); - CHECK(ret, FAIL, "H5Oget_info"); - VERIFY(oinfo.hdr.version, oh_vers_mod, "H5Oget_info"); + ret = H5Oget_native_info(group, &ninfo, H5O_NATIVE_INFO_HDR); + CHECK(ret, FAIL, "H5Oget_native)info"); + VERIFY(ninfo.hdr.version, oh_vers_mod, "H5Oget_native_info"); ret = H5Gclose(group); CHECK(ret, FAIL, "H5Gclose"); @@ -5236,9 +5237,9 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, group = H5Gcreate2(file, "/G1/G3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); CHECK(group, FAIL, "H5Gcreate"); - ret = H5Oget_info2(group, &oinfo, H5O_INFO_HDR); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.version, oh_vers_mod, "H5Oget_info_by_name"); + ret = H5Oget_native_info(group, &ninfo, H5O_NATIVE_INFO_HDR); + CHECK(ret, FAIL, "H5Oget_native_info"); + VERIFY(ninfo.hdr.version, oh_vers_mod, "H5Oget_native_info"); ret = H5Gclose(group); CHECK(ret, FAIL, "H5Gclose"); @@ -5246,9 +5247,9 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, /* * Make sure the root group still has the correct object header version */ - ret = H5Oget_info_by_name2(file, "/", &oinfo, H5O_INFO_HDR, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.version, oh_vers_create, "H5Oget_info_by_name"); + ret = H5Oget_native_info_by_name(file, "/", &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.version, oh_vers_create, "H5Oget_native_info_by_name"); ret = H5Fclose(file); CHECK(ret, FAIL, "H5Fclose"); @@ -6034,7 +6035,7 @@ test_libver_bounds_obj(hid_t fapl) hid_t new_fapl = H5I_INVALID_HID; /* File access property list */ H5F_t *f = NULL; /* Internal file pointer */ H5F_libver_t low, high; /* Low and high bounds */ - H5O_info_t oinfo; /* Object info */ + H5O_native_info_t ninfo; /* Object info */ H5G_info_t ginfo; /* Group info */ herr_t ret; /* Return value */ @@ -6058,11 +6059,11 @@ test_libver_bounds_obj(hid_t fapl) CHECK(fid, H5I_INVALID_HID, "H5Fcreate"); /* Get root group's object info */ - ret = H5Oget_info_by_name2(fid, "/", &oinfo, H5O_INFO_HDR, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); + ret = H5Oget_native_info_by_name(fid, "/", &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); /* Verify object header version is 2 because shared message is enabled */ - VERIFY(oinfo.hdr.version, H5O_VERSION_2, "H5O_obj_ver_bounds"); + VERIFY(ninfo.hdr.version, H5O_VERSION_2, "H5O_obj_ver_bounds"); /* Close the file */ ret = H5Fclose(fid); @@ -6077,11 +6078,11 @@ test_libver_bounds_obj(hid_t fapl) CHECK(fid, H5I_INVALID_HID, "H5Fcreate"); /* Get root group's object info */ - ret = H5Oget_info_by_name2(fid, "/", &oinfo, H5O_INFO_HDR, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); + ret = H5Oget_native_info_by_name(fid, "/", &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); /* Verify object header version is as indicated by low_bound */ - VERIFY(oinfo.hdr.version, H5O_obj_ver_bounds[low], "H5O_obj_ver_bounds"); + VERIFY(ninfo.hdr.version, H5O_obj_ver_bounds[low], "H5O_obj_ver_bounds"); /* Close the file */ ret = H5Fclose(fid); @@ -6132,11 +6133,11 @@ test_libver_bounds_obj(hid_t fapl) VERIFY(ginfo.storage_type, H5G_STORAGE_TYPE_SYMBOL_TABLE, "H5Gget_info"); /* Get object header information */ - ret = H5Oget_info_by_name2(gid, GRP_NAME, &oinfo, H5O_INFO_HDR, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); + ret = H5Oget_native_info_by_name(gid, GRP_NAME, &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); /* Verify object header version as indicated by low_bound */ - VERIFY(oinfo.hdr.version, H5O_obj_ver_bounds[f->shared->low_bound], "H5O_obj_ver_bounds"); + VERIFY(ninfo.hdr.version, H5O_obj_ver_bounds[f->shared->low_bound], "H5O_obj_ver_bounds"); /* Close the group */ ret = H5Gclose(gid); diff --git a/test/th5o.c b/test/th5o.c index 354245f..ab4a8de 100644 --- a/test/th5o.c +++ b/test/th5o.c @@ -20,6 +20,9 @@ *************************************************************/ #include "testhdf5.h" +#include "H5Fprivate.h" +#include "H5VLprivate.h" +#include "H5VLnative_private.h" #define TEST_FILENAME "th5o_file" @@ -231,6 +234,7 @@ test_h5o_close(void) } +#ifndef H5_NO_DEPRECATED_SYMBOLS /**************************************************************** ** ** test_h5o_open_by_addr(): Test H5Oopen_by_addr function. @@ -239,17 +243,17 @@ test_h5o_close(void) static void test_h5o_open_by_addr(void) { - hid_t fid; /* HDF5 File ID */ - hid_t grp, dset, dtype, dspace; /* Object identifiers */ - H5L_info_t li; /* Buffer for H5Lget_info */ - haddr_t grp_addr; /* Addresses for objects */ - haddr_t dset_addr; - haddr_t dtype_addr; - hsize_t dims[RANK]; - H5I_type_t id_type; /* Type of IDs returned from H5Oopen */ - H5G_info_t ginfo; /* Group info struct */ - H5T_class_t type_class; /* Class of the datatype */ - herr_t ret; /* Value returned from API calls */ + hid_t fid; /* HDF5 File ID */ + hid_t grp, dset, dtype, dspace; /* Object identifiers */ + H5L_info2_t li; /* Buffer for H5Lget_info */ + haddr_t grp_addr; /* Addresses for objects */ + haddr_t dset_addr; + haddr_t dtype_addr; + hsize_t dims[RANK]; + H5I_type_t id_type; /* Type of IDs returned from H5Oopen */ + H5G_info_t ginfo; /* Group info struct */ + H5T_class_t type_class; /* Class of the datatype */ + herr_t ret; /* Value returned from API calls */ /* Create a new HDF5 file */ fid = H5Fcreate(TEST_FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -285,15 +289,20 @@ test_h5o_open_by_addr(void) CHECK(ret, FAIL, "H5Sclose"); /* Get address for each object */ - ret = H5Lget_info(fid, "group", &li, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Lget_info"); - grp_addr = li.u.address; - ret = H5Lget_info(fid, "group/datatype", &li, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Lget_info"); - dtype_addr = li.u.address; - ret = H5Lget_info(fid, "dataset", &li, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Lget_info"); - dset_addr = li.u.address; + ret = H5Lget_info2(fid, "group", &li, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info2"); + ret = H5VLnative_token_to_addr(fid, li.u.token, &grp_addr); + CHECK(ret, FAIL, "H5VLnative_token_to_addr"); + + ret = H5Lget_info2(fid, "group/datatype", &li, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info2"); + ret = H5VLnative_token_to_addr(fid, li.u.token, &dtype_addr); + CHECK(ret, FAIL, "H5VLnative_token_to_addr"); + + ret = H5Lget_info2(fid, "dataset", &li, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info2"); + ret = H5VLnative_token_to_addr(fid, li.u.token, &dset_addr); + CHECK(ret, FAIL, "H5VLnative_token_to_addr"); /* Now make sure that H5Oopen_by_addr can open all three types of objects */ grp = H5Oopen_by_addr(fid, grp_addr); @@ -366,7 +375,122 @@ test_h5o_open_by_addr(void) }H5E_END_TRY VERIFY(dtype, FAIL, "H5Oopen_by_addr"); } /* test_h5o_open_by_addr() */ +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + + +/**************************************************************** +** +** test_h5o_open_by_token(): Test H5Oopen_by_token function. +** +****************************************************************/ +static void +test_h5o_open_by_token(void) +{ + hid_t fid; /* HDF5 File ID */ + hid_t grp, dset, dtype, dspace; /* Object identifiers */ + H5L_info2_t li; /* Buffer for H5Lget_info */ + hsize_t dims[RANK]; + H5I_type_t id_type; /* Type of IDs returned from H5Oopen */ + H5G_info_t ginfo; /* Group info struct */ + H5T_class_t type_class; /* Class of the datatype */ + herr_t ret; /* Value returned from API calls */ + + /* Create a new HDF5 file */ + fid = H5Fcreate(TEST_FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Create a group, dataset, and committed datatype within the file */ + /* Create the group */ + grp = H5Gcreate2(fid, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(grp, FAIL, "H5Gcreate2"); + ret = H5Gclose(grp); + CHECK(ret, FAIL, "H5Gclose"); + + /* Commit the type inside the group */ + dtype = H5Tcopy(H5T_NATIVE_INT); + CHECK(dtype, FAIL, "H5Tcopy"); + ret = H5Tcommit2(fid, "group/datatype", dtype, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Tcommit2"); + ret = H5Tclose(dtype); + CHECK(ret, FAIL, "H5Tclose"); + + /* Create the data space for the dataset. */ + dims[0] = DIM0; + dims[1] = DIM1; + dspace = H5Screate_simple(RANK, dims, NULL); + CHECK(dspace, FAIL, "H5Screate_simple"); + + /* Create the dataset. */ + dset = H5Dcreate2(fid, "dataset", H5T_NATIVE_INT, dspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(dset, FAIL, "H5Dcreate2"); + ret = H5Dclose(dset); + CHECK(ret, FAIL, "H5Dclose"); + ret = H5Sclose(dspace); + CHECK(ret, FAIL, "H5Sclose"); + + /* Make sure that H5Oopen_by_token can open all three types of objects */ + ret = H5Lget_info2(fid, "group", &li, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info"); + grp = H5Oopen_by_token(fid, li.u.token); + CHECK(grp, FAIL, "H5Oopen_by_token"); + + ret = H5Lget_info2(fid, "group/datatype", &li, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info"); + dtype = H5Oopen_by_token(fid, li.u.token); + CHECK(dtype, FAIL, "H5Oopen_by_token"); + + ret = H5Lget_info2(fid, "dataset", &li, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info"); + /* Check that we can use the group ID as a valid location */ + dset = H5Oopen_by_token(grp, li.u.token); + CHECK(dset, FAIL, "H5Oopen_by_token"); + + /* Make sure that each is the right kind of ID */ + id_type = H5Iget_type(grp); + VERIFY(id_type, H5I_GROUP, "H5Iget_type for group ID"); + id_type = H5Iget_type(dtype); + VERIFY(id_type, H5I_DATATYPE, "H5Iget_type for datatype ID"); + id_type = H5Iget_type(dset); + VERIFY(id_type, H5I_DATASET, "H5Iget_type for dataset ID"); + + /* Do something more complex with each of the IDs to make sure they "work" */ + ret = H5Gget_info(grp, &ginfo); + CHECK(ret, FAIL, "H5Gget_info"); + VERIFY(ginfo.nlinks, 1, "H5Gget_info"); /* There should be one object, the datatype */ + + type_class = H5Tget_class(dtype); + VERIFY(type_class, H5T_INTEGER, "H5Tget_class"); + + dspace = H5Dget_space(dset); + CHECK(dspace, FAIL, "H5Dget_space"); + + /* Close the IDs */ + ret = H5Sclose(dspace); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Gclose(grp); + CHECK(ret, FAIL, "H5Gclose"); + ret = H5Tclose(dtype); + CHECK(ret, FAIL, "H5Tclose"); + ret = H5Dclose(dset); + CHECK(ret, FAIL, "H5Dclose"); + + /* Try giving some bogus values to H5O_open_by_token */ + /* Try opening an object using H5O_TOKEN_UNDEF (should fail) */ + H5E_BEGIN_TRY{ + dtype = H5Oopen_by_token(fid, H5O_TOKEN_UNDEF); + }H5E_END_TRY + VERIFY(dtype, FAIL, "H5Oopen_by_token"); + + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Also, trying to open an object without a valid location (should fail) */ + H5E_BEGIN_TRY{ + dtype = H5Oopen_by_token(fid, li.u.token); + }H5E_END_TRY + VERIFY(dtype, FAIL, "H5Oopen_by_token"); +} /* test_h5o_open_by_token() */ /**************************************************************** ** @@ -378,7 +502,7 @@ test_h5o_refcount(void) { hid_t fid; /* HDF5 File ID */ hid_t grp, dset, dtype, dspace; /* Object identifiers */ - H5O_info_t oinfo; /* Object info struct */ + H5O_info2_t oinfo; /* Object info struct */ hsize_t dims[RANK]; herr_t ret; /* Value returned from API calls */ @@ -410,15 +534,15 @@ test_h5o_refcount(void) CHECK(ret, FAIL, "H5Sclose"); /* Get ref counts for each object. They should all be 1, since each object has a hard link. */ - ret = H5Oget_info_by_name2(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name3"); /* Increment each object's reference count. */ ret = H5Oincr_refcount(grp); @@ -429,15 +553,15 @@ test_h5o_refcount(void) CHECK(ret, FAIL, "H5Oincr_refcount"); /* Get ref counts for each object. They should all be 2 now. */ - ret = H5Oget_info_by_name2(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name3"); /* Decrement the reference counts and check that they decrease back to 1. */ ret = H5Odecr_refcount(grp); @@ -447,15 +571,15 @@ test_h5o_refcount(void) ret = H5Odecr_refcount(dset); CHECK(ret, FAIL, "H5Odecr_refcount"); - ret = H5Oget_info_by_name2(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name3"); /* Increment the reference counts and then close the file to make sure the increment is permanant */ ret = H5Oincr_refcount(grp); @@ -485,15 +609,15 @@ test_h5o_refcount(void) dset = H5Dopen2(fid, "dataset", H5P_DEFAULT); CHECK(dset, FAIL, "H5Dopen2"); - ret = H5Oget_info_by_name2(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 2, "reference count in H5Oget_info_by_name3"); /* Decrement the reference counts and close the file */ ret = H5Odecr_refcount(grp); @@ -523,15 +647,15 @@ test_h5o_refcount(void) dset = H5Dopen2(fid, "dataset", H5P_DEFAULT); CHECK(dset, FAIL, "H5Dopen2"); - ret = H5Oget_info_by_name2(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(fid, "group", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid, "datatype", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid, "dataset", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + VERIFY(oinfo.rc, 1, "reference count in H5Oget_info_by_name3"); /* Close the IDs */ ret = H5Gclose(grp); @@ -1254,7 +1378,7 @@ test_h5o_getinfo_same_file(void) { hid_t fid1, fid2; /* HDF5 File ID */ hid_t gid1, gid2; /* Group IDs */ - H5O_info_t oinfo1, oinfo2; /* Object info structs */ + H5O_info2_t oinfo1, oinfo2; /* Object info structs */ herr_t ret; /* Value returned from API calls */ /* Create a new HDF5 file */ @@ -1272,24 +1396,24 @@ test_h5o_getinfo_same_file(void) HDmemset(&oinfo2, 0, sizeof(oinfo2)); /* Query the object info for each object, through group IDs */ - ret = H5Oget_info2(gid1, &oinfo1, H5O_INFO_BASIC); - CHECK(ret, FAIL, "H5Oget_info"); - ret = H5Oget_info2(gid2, &oinfo2, H5O_INFO_BASIC); - CHECK(ret, FAIL, "H5Oget_info"); + ret = H5Oget_info3(gid1, &oinfo1, H5O_INFO_BASIC); + CHECK(ret, FAIL, "H5Oget_info3"); + ret = H5Oget_info3(gid2, &oinfo2, H5O_INFO_BASIC); + CHECK(ret, FAIL, "H5Oget_info3"); - VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info"); + VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info3"); /* Reset object info */ HDmemset(&oinfo1, 0, sizeof(oinfo1)); HDmemset(&oinfo2, 0, sizeof(oinfo2)); /* Query the object info for each object, by name */ - ret = H5Oget_info_by_name2(fid1, "group1", &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid1, "group2", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(fid1, "group1", &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid1, "group2", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); - VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info"); + VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info3"); /* Close everything */ ret = H5Gclose(gid1); @@ -1317,24 +1441,24 @@ test_h5o_getinfo_same_file(void) HDmemset(&oinfo2, 0, sizeof(oinfo2)); /* Query the object info for each object, through group IDs */ - ret = H5Oget_info2(gid1, &oinfo1, H5O_INFO_BASIC); - CHECK(ret, FAIL, "H5Oget_info"); - ret = H5Oget_info2(gid2, &oinfo2, H5O_INFO_BASIC); - CHECK(ret, FAIL, "H5Oget_info"); + ret = H5Oget_info3(gid1, &oinfo1, H5O_INFO_BASIC); + CHECK(ret, FAIL, "H5Oget_info3"); + ret = H5Oget_info3(gid2, &oinfo2, H5O_INFO_BASIC); + CHECK(ret, FAIL, "H5Oget_info3"); - VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info"); + VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info3"); /* Reset object info */ HDmemset(&oinfo1, 0, sizeof(oinfo1)); HDmemset(&oinfo2, 0, sizeof(oinfo2)); /* Query the object info for each object, by name */ - ret = H5Oget_info_by_name2(fid1, "group1", &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(fid1, "group2", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(fid1, "group1", &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(fid1, "group2", &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); - VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info"); + VERIFY(oinfo1.fileno, oinfo2.fileno, "file number from H5Oget_info3"); /* Close everything */ ret = H5Gclose(gid1); @@ -1352,6 +1476,143 @@ test_h5o_getinfo_same_file(void) /**************************************************************** ** +** test_h5o_open_by_addr_deprec(): Test H5Oopen_by_addr function. +** +****************************************************************/ +static void +test_h5o_open_by_addr_deprec(void) +{ + hid_t fid; /* HDF5 File ID */ + hid_t grp, dset, dtype, dspace; /* Object identifiers */ + H5L_info1_t li; /* Buffer for H5Lget_info1 */ + haddr_t grp_addr; /* Addresses for objects */ + haddr_t dset_addr; + haddr_t dtype_addr; + hsize_t dims[RANK]; + H5I_type_t id_type; /* Type of IDs returned from H5Oopen */ + H5G_info_t ginfo; /* Group info struct */ + H5T_class_t type_class; /* Class of the datatype */ + herr_t ret; /* Value returned from API calls */ + + /* Create a new HDF5 file */ + fid = H5Fcreate(TEST_FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Create a group, dataset, and committed datatype within the file */ + /* Create the group */ + grp = H5Gcreate2(fid, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(grp, FAIL, "H5Gcreate2"); + ret = H5Gclose(grp); + CHECK(ret, FAIL, "H5Gclose"); + + /* Commit the type inside the group */ + dtype = H5Tcopy(H5T_NATIVE_INT); + CHECK(dtype, FAIL, "H5Tcopy"); + ret = H5Tcommit2(fid, "group/datatype", dtype, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Tcommit2"); + ret = H5Tclose(dtype); + CHECK(ret, FAIL, "H5Tclose"); + + /* Create the data space for the dataset. */ + dims[0] = DIM0; + dims[1] = DIM1; + dspace = H5Screate_simple(RANK, dims, NULL); + CHECK(dspace, FAIL, "H5Screate_simple"); + + /* Create the dataset. */ + dset = H5Dcreate2(fid, "dataset", H5T_NATIVE_INT, dspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(dset, FAIL, "H5Dcreate2"); + ret = H5Dclose(dset); + CHECK(ret, FAIL, "H5Dclose"); + ret = H5Sclose(dspace); + CHECK(ret, FAIL, "H5Sclose"); + + /* Get address for each object */ + ret = H5Lget_info1(fid, "group", &li, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info"); + grp_addr = li.u.address; + ret = H5Lget_info1(fid, "group/datatype", &li, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info"); + dtype_addr = li.u.address; + ret = H5Lget_info1(fid, "dataset", &li, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info"); + dset_addr = li.u.address; + + /* Now make sure that H5Oopen_by_addr can open all three types of objects */ + grp = H5Oopen_by_addr(fid, grp_addr); + CHECK(grp, FAIL, "H5Oopen_by_addr"); + dtype = H5Oopen_by_addr(fid, dtype_addr); + CHECK(dtype, FAIL, "H5Oopen_by_addr"); + /* Check that we can use the group ID as a valid location */ + dset = H5Oopen_by_addr(grp, dset_addr); + CHECK(dset, FAIL, "H5Oopen_by_addr"); + + /* Make sure that each is the right kind of ID */ + id_type = H5Iget_type(grp); + VERIFY(id_type, H5I_GROUP, "H5Iget_type for group ID"); + id_type = H5Iget_type(dtype); + VERIFY(id_type, H5I_DATATYPE, "H5Iget_type for datatype ID"); + id_type = H5Iget_type(dset); + VERIFY(id_type, H5I_DATASET, "H5Iget_type for dataset ID"); + + /* Do something more complex with each of the IDs to make sure they "work" */ + ret = H5Gget_info(grp, &ginfo); + CHECK(ret, FAIL, "H5Gget_info"); + VERIFY(ginfo.nlinks, 1, "H5Gget_info"); /* There should be one object, the datatype */ + + type_class = H5Tget_class(dtype); + VERIFY(type_class, H5T_INTEGER, "H5Tget_class"); + + dspace = H5Dget_space(dset); + CHECK(dspace, FAIL, "H5Dget_space"); + + /* Close the IDs */ + ret = H5Sclose(dspace); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Gclose(grp); + CHECK(ret, FAIL, "H5Gclose"); + ret = H5Tclose(dtype); + CHECK(ret, FAIL, "H5Tclose"); + ret = H5Dclose(dset); + CHECK(ret, FAIL, "H5Dclose"); + + /* Try giving some bogus values to H5O_open_by_addr. */ + /* Try to open an object with a bad address */ + grp_addr += 20; + H5E_BEGIN_TRY{ + grp = H5Oopen_by_addr(fid, grp_addr); + }H5E_END_TRY + VERIFY(grp, FAIL, "H5Oopen_by_addr"); + + /* For instance, an objectno smaller than the end of the file's superblock should + * trigger an error */ + grp_addr = 10; + H5E_BEGIN_TRY{ + grp = H5Oopen_by_addr(fid, grp_addr); + }H5E_END_TRY + VERIFY(grp, FAIL, "H5Oopen_by_addr"); + + /* Likewise, an objectno larger than the size of the file should fail */ + grp_addr = 0; + grp_addr = 1000000000; + H5E_BEGIN_TRY{ + grp = H5Oopen_by_addr(fid, grp_addr); + }H5E_END_TRY + VERIFY(grp, FAIL, "H5Oopen_by_addr"); + + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Also, trying to open an object without a valid location should fail */ + H5E_BEGIN_TRY{ + dtype = H5Oopen_by_addr(fid, dtype_addr); + }H5E_END_TRY + VERIFY(dtype, FAIL, "H5Oopen_by_addr"); +} /* test_h5o_open_by_addr_deprec() */ + + +/**************************************************************** +** ** visit_obj_cb(): ** This is the callback function invoked by H5Ovisit1() in ** test_h5o_getinfo_visit(): @@ -1360,10 +1621,10 @@ test_h5o_getinfo_same_file(void) ** ****************************************************************/ static int -visit_obj_cb(hid_t group_id, const char *name, const H5O_info_t *oinfo1, +visit_obj_cb(hid_t group_id, const char *name, const H5O_info1_t *oinfo1, void H5_ATTR_UNUSED *_op_data) { - H5O_info_t oinfo2; /* Object info structs */ + H5O_info1_t oinfo2; /* Object info structs */ /* Verify the object info for "group1", "group2" and the root group */ if(!(HDstrcmp(name, "group1"))) { @@ -1399,7 +1660,7 @@ test_h5o_getinfo_visit(void) hid_t gid1 = -1, gid2 = -1; /* Group IDs */ hid_t sid = -1; /* Dataspace ID */ hid_t aid = -1; /* Attribute ID */ - H5O_info_t oinfo1, oinfo2; /* Object info structs */ + H5O_info1_t oinfo1, oinfo2; /* Object info structs */ char attrname[25]; /* Attribute name */ int j; /* Local index variable */ herr_t ret; /* Value returned from API calls */ @@ -1438,9 +1699,9 @@ test_h5o_getinfo_visit(void) /* Query the object info for "group1" via H5Oget_info1 and H5Oget_info2 */ ret = H5Oget_info1(gid1, &oinfo1); - CHECK(ret, FAIL, "H5Oget_info"); + CHECK(ret, FAIL, "H5Oget_info1"); ret = H5Oget_info2(gid1, &oinfo2, H5O_INFO_BASIC|H5O_INFO_NUM_ATTRS); - CHECK(ret, FAIL, "H5Oget_info"); + CHECK(ret, FAIL, "H5Oget_info2"); /* Verify the object info for "group1" is correct */ VERIFY(oinfo1.fileno, oinfo2.fileno, "obj info from H5Oget_info1/2"); @@ -1452,9 +1713,9 @@ test_h5o_getinfo_visit(void) /* Query the object info for "group2" via H5Oget_info1 and H5Oget_info2 */ ret = H5Oget_info_by_name1(fid, "group2", &oinfo1, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); ret = H5Oget_info_by_name2(fid, "group2", &oinfo2, H5O_INFO_HDR|H5O_INFO_META_SIZE, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); /* Verify the object info for "group2" is correct */ VERIFY(oinfo1.hdr.nmesgs, oinfo2.hdr.nmesgs, "obj info from H5Oget_info1/2"); @@ -1491,18 +1752,22 @@ test_h5o(void) /* Output message about test being performed */ MESSAGE(5, ("Testing Objects\n")); - test_h5o_open(); /* Test generic open function */ - test_h5o_open_by_addr(); /* Test opening objects by address */ - test_h5o_close(); /* Test generic close function */ - test_h5o_refcount(); /* Test incrementing and decrementing reference count */ - test_h5o_plist(); /* Test object creation properties */ - test_h5o_link(); /* Test object link routine */ - test_h5o_comment(); /* Test routines for comment */ - test_h5o_comment_by_name(); /* Test routines for comment by name */ - test_h5o_getinfo_same_file(); /* Test info for objects in the same file */ + test_h5o_open(); /* Test generic open function */ #ifndef H5_NO_DEPRECATED_SYMBOLS - test_h5o_getinfo_visit(); /* Test object info for H5Oget_info1/2 and H5Ovisit1 */ -#endif + test_h5o_open_by_addr(); /* Test opening objects by address */ +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + test_h5o_open_by_token(); /* Test opening objects by token */ + test_h5o_close(); /* Test generic close function */ + test_h5o_refcount(); /* Test incrementing and decrementing reference count */ + test_h5o_plist(); /* Test object creation properties */ + test_h5o_link(); /* Test object link routine */ + test_h5o_comment(); /* Test routines for comment */ + test_h5o_comment_by_name(); /* Test routines for comment by name */ + test_h5o_getinfo_same_file(); /* Test info for objects in the same file */ +#ifndef H5_NO_DEPRECATED_SYMBOLS + test_h5o_open_by_addr_deprec(); /* Test opening objects by address with H5Lget_info1 */ + test_h5o_getinfo_visit(); /* Test object info for H5Oget_info1/2 and H5Ovisit1 */ +#endif /* H5_NO_DEPRECATED_SYMBOLS */ } /* test_h5o() */ diff --git a/test/th5s.c b/test/th5s.c index 7e1e547..c60b1ff 100644 --- a/test/th5s.c +++ b/test/th5s.c @@ -2459,11 +2459,12 @@ test_h5s_compound_scalar_read(void) /* Close file */ ret = H5Fclose(fid1); CHECK(ret, FAIL, "H5Fclose"); -} /* test_h5s_compound_scalar_read() */ +} /* end test_h5s_compound_scalar_read() */ -/* Data arrays for chunk test */ -double chunk_data_dbl[50000][3]; -float chunk_data_flt[50000][3]; + +/* Data array sizes for chunk test */ +#define CHUNK_DATA_NX 50000 +#define CHUNK_DATA_NY 3 /**************************************************************** ** @@ -2481,22 +2482,41 @@ test_h5s_chunk(void) hid_t space_id; hsize_t dims[2]; hsize_t csize[2]; + double **chunk_data_dbl = NULL; + double *chunk_data_dbl_data = NULL; + float **chunk_data_flt = NULL; + float *chunk_data_flt_data = NULL; int i,j; + /* Allocate memory */ + chunk_data_dbl_data = (double *)HDcalloc(CHUNK_DATA_NX * CHUNK_DATA_NY, sizeof(double)); + CHECK_PTR(chunk_data_dbl_data, "HDcalloc"); + chunk_data_dbl = (double **)HDcalloc(CHUNK_DATA_NX, sizeof(chunk_data_dbl_data)); + CHECK_PTR(chunk_data_dbl, "HDcalloc"); + for (i = 0; i < CHUNK_DATA_NX; i++) + chunk_data_dbl[i] = chunk_data_dbl_data + (i * CHUNK_DATA_NY); + + chunk_data_flt_data = (float *)HDcalloc(CHUNK_DATA_NX * CHUNK_DATA_NY, sizeof(float)); + CHECK_PTR(chunk_data_flt_data, "HDcalloc"); + chunk_data_flt = (float **)HDcalloc(CHUNK_DATA_NX, sizeof(chunk_data_flt_data)); + CHECK_PTR(chunk_data_flt, "HDcalloc"); + for (i = 0; i < CHUNK_DATA_NX; i++) + chunk_data_flt[i] = chunk_data_flt_data + (i * CHUNK_DATA_NY); + fileID = H5Fcreate(DATAFILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); CHECK(fileID, FAIL, "H5Fcreate"); plist_id = H5Pcreate(H5P_DATASET_CREATE); CHECK(plist_id, FAIL, "H5Pcreate"); - csize[0] = 50000; - csize[1] = 3; + csize[0] = CHUNK_DATA_NX; + csize[1] = CHUNK_DATA_NY; status = H5Pset_chunk(plist_id, 2, csize); CHECK(status, FAIL, "H5Pset_chunk"); /* Create the dataspace */ - dims[0] = 50000; - dims[1] = 3; + dims[0] = CHUNK_DATA_NX; + dims[1] = CHUNK_DATA_NY; space_id = H5Screate_simple(2, dims, NULL); CHECK(space_id, FAIL, "H5Screate_simple"); @@ -2504,11 +2524,11 @@ test_h5s_chunk(void) CHECK(dsetID, FAIL, "H5Dcreate2"); /* Initialize float array */ - for(i = 0; i < 50000; i++) - for(j = 0; j < 3; j++) + for(i = 0; i < CHUNK_DATA_NX; i++) + for(j = 0; j < CHUNK_DATA_NY; j++) chunk_data_flt[i][j] = (float)(i + 1) * 2.5F - (float)j * 100.3F; - status = H5Dwrite(dsetID, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, chunk_data_flt); + status = H5Dwrite(dsetID, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, chunk_data_flt_data); CHECK(status, FAIL, "H5Dwrite"); status = H5Pclose(plist_id); @@ -2521,17 +2541,17 @@ test_h5s_chunk(void) CHECK(status, FAIL, "H5Fclose"); /* Reset/initialize the data arrays to read in */ - HDmemset(chunk_data_dbl, 0, sizeof(double) * 50000 * 3); - HDmemset(chunk_data_flt, 0, sizeof(float) * 50000 * 3); + HDmemset(chunk_data_dbl_data, 0, sizeof(double) * CHUNK_DATA_NX * CHUNK_DATA_NY); + HDmemset(chunk_data_flt_data, 0, sizeof(float) * CHUNK_DATA_NX * CHUNK_DATA_NY); fileID = H5Fopen(DATAFILE, H5F_ACC_RDONLY, H5P_DEFAULT); CHECK(fileID, FAIL, "H5Fopen"); dsetID = H5Dopen2(fileID, "coords", H5P_DEFAULT); CHECK(dsetID, FAIL, "H5Dopen2"); - status= H5Dread(dsetID, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, chunk_data_dbl); + status= H5Dread(dsetID, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, chunk_data_dbl_data); CHECK(status, FAIL, "H5Dread"); - status= H5Dread(dsetID, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, chunk_data_flt); + status= H5Dread(dsetID, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, chunk_data_flt_data); CHECK(status, FAIL, "H5Dread"); status = H5Dclose(dsetID); @@ -2539,13 +2559,18 @@ test_h5s_chunk(void) status = H5Fclose(fileID); CHECK(status, FAIL, "H5Fclose"); - for(i=0; i<50000; i++) { - for(j=0; j<3; j++) { + for(i = 0; i < CHUNK_DATA_NX; i++) { + for(j = 0; j < CHUNK_DATA_NY; j++) { /* Check if the two values are within 0.001% range. */ if(!H5_DBL_REL_EQUAL(chunk_data_dbl[i][j], (double)chunk_data_flt[i][j], (double)0.00001F)) TestErrPrintf("%u: chunk_data_dbl[%d][%d]=%e, chunk_data_flt[%d][%d]=%e\n", (unsigned)__LINE__, i, j, chunk_data_dbl[i][j], i, j, (double)chunk_data_flt[i][j]); } /* end for */ } /* end for */ + + HDfree(chunk_data_dbl); + HDfree(chunk_data_dbl_data); + HDfree(chunk_data_flt); + HDfree(chunk_data_flt_data); } /* test_h5s_chunk() */ /**************************************************************** diff --git a/test/titerate.c b/test/titerate.c index 669a094..9d60915 100644 --- a/test/titerate.c +++ b/test/titerate.c @@ -68,9 +68,9 @@ static int find_err_msg_cb(unsigned n, const H5E_error2_t *err_desc, void *_clie /* Local functions */ int iter_strcmp(const void *s1, const void *s2); int iter_strcmp2(const void *s1, const void *s2); -static herr_t liter_cb(hid_t group, const char *name, const H5L_info_t *info, +static herr_t liter_cb(hid_t group, const char *name, const H5L_info2_t *info, void *op_data); -static herr_t liter_cb2(hid_t group, const char *name, const H5L_info_t *info, +static herr_t liter_cb2(hid_t group, const char *name, const H5L_info2_t *info, void *op_data); herr_t aiter_cb(hid_t group, const char *name, const H5A_info_t *ainfo, void *op_data); @@ -91,7 +91,7 @@ H5_ATTR_PURE int iter_strcmp(const void *s1, const void *s2) ** ****************************************************************/ static herr_t -liter_cb(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info_t H5_ATTR_UNUSED *link_info, +liter_cb(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info2_t H5_ATTR_UNUSED *link_info, void *op_data) { iter_info *info = (iter_info *)op_data; @@ -153,8 +153,8 @@ test_iter_group(hid_t fapl, hbool_t new_format) /* Test iterating over empty group */ info.command = RET_ZERO; idx = 0; - ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info); - VERIFY(ret, SUCCEED, "H5Literate"); + ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info); + VERIFY(ret, SUCCEED, "H5Literate2"); datatype = H5Tcopy(H5T_NATIVE_INT); CHECK(datatype, FAIL, "H5Tcopy"); @@ -220,12 +220,12 @@ test_iter_group(hid_t fapl, hbool_t new_format) VERIFY(ginfo.nlinks, (NDATASETS + 2), "H5Gget_info"); for(i = 0; i< (int)ginfo.nlinks; i++) { - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ ret = (herr_t)H5Lget_name_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, dataset_name, (size_t)NAMELEN, H5P_DEFAULT); CHECK(ret, FAIL, "H5Lget_name_by_idx"); - ret = H5Oget_info_by_idx2(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret = H5Oget_info_by_idx3(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_idx"); } /* end for */ @@ -246,13 +246,13 @@ test_iter_group(hid_t fapl, hbool_t new_format) VERIFY(ginfo.nlinks, NDATASETS + 2, "H5Gget_info"); for(i = 0; i< (int)ginfo.nlinks; i++) { - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ ret = (herr_t)H5Lget_name_by_idx(file, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, dataset_name, (size_t)NAMELEN, H5P_DEFAULT); CHECK(ret, FAIL, "H5Lget_name_by_idx"); - ret = H5Oget_info_by_idx2(file, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_idx"); + ret = H5Oget_info_by_idx3(file, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_idx3"); } /* end for */ H5E_BEGIN_TRY { @@ -264,28 +264,28 @@ test_iter_group(hid_t fapl, hbool_t new_format) info.command = RET_ZERO; idx = (hsize_t)-1; H5E_BEGIN_TRY { - ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info); + ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info); } H5E_END_TRY; - VERIFY(ret, FAIL, "H5Literate"); + VERIFY(ret, FAIL, "H5Literate2"); /* Test skipping exactly as many entries as in the group */ idx = NDATASETS + 2; H5E_BEGIN_TRY { - ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info); + ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info); } H5E_END_TRY; - VERIFY(ret, FAIL, "H5Literate"); + VERIFY(ret, FAIL, "H5Literate2"); /* Test skipping more entries than are in the group */ idx = NDATASETS + 3; H5E_BEGIN_TRY { - ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info); + ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info); } H5E_END_TRY; - VERIFY(ret, FAIL, "H5Literate"); + VERIFY(ret, FAIL, "H5Literate2"); /* Test all objects in group, when callback always returns 0 */ info.command = RET_ZERO; idx = 0; - if((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0) + if((ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0) TestErrPrintf("Group iteration function didn't return zero correctly!\n"); /* Test all objects in group, when callback always returns 1 */ @@ -293,15 +293,15 @@ test_iter_group(hid_t fapl, hbool_t new_format) info.command = RET_TWO; i = 0; idx = 0; - while((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0) { + while((ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0) { /* Verify return value from iterator gets propagated correctly */ - VERIFY(ret, 2, "H5Literate"); + VERIFY(ret, 2, "H5Literate2"); /* Increment the number of times "2" is returned */ i++; /* Verify that the index is the correct value */ - VERIFY(idx, (hsize_t)i, "H5Literate"); + VERIFY(idx, (hsize_t)i, "H5Literate2"); if(idx > (NDATASETS + 2)) TestErrPrintf("Group iteration function walked too far!\n"); @@ -309,7 +309,7 @@ test_iter_group(hid_t fapl, hbool_t new_format) if(HDstrcmp(info.name, lnames[(size_t)(idx - 1)]) != 0) TestErrPrintf("Group iteration function didn't return name correctly for link - lnames[%u] = '%s'!\n", (unsigned)(idx - 1), lnames[(size_t)(idx - 1)]); } /* end while */ - VERIFY(ret, -1, "H5Literate"); + VERIFY(ret, -1, "H5Literate2"); if(i != (NDATASETS + 2)) TestErrPrintf("%u: Group iteration function didn't perform multiple iterations correctly!\n", __LINE__); @@ -319,15 +319,15 @@ test_iter_group(hid_t fapl, hbool_t new_format) info.command = new_format ? RET_CHANGE2 : RET_CHANGE; i = 0; idx = 0; - while((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) >= 0) { + while((ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) >= 0) { /* Verify return value from iterator gets propagated correctly */ - VERIFY(ret, 1, "H5Literate"); + VERIFY(ret, 1, "H5Literate2"); /* Increment the number of times "1" is returned */ i++; /* Verify that the index is the correct value */ - VERIFY(idx, (hsize_t)(i + 10), "H5Literate"); + VERIFY(idx, (hsize_t)(i + 10), "H5Literate2"); if(idx > (NDATASETS + 2)) TestErrPrintf("Group iteration function walked too far!\n"); @@ -335,7 +335,7 @@ test_iter_group(hid_t fapl, hbool_t new_format) if(HDstrcmp(info.name, lnames[(size_t)(idx - 1)]) != 0) TestErrPrintf("Group iteration function didn't return name correctly for link - lnames[%u] = '%s'!\n", (unsigned)(idx - 1), lnames[(size_t)(idx - 1)]); } /* end while */ - VERIFY(ret, -1, "H5Literate"); + VERIFY(ret, -1, "H5Literate2"); if(i != 42 || idx != 52) TestErrPrintf("%u: Group iteration function didn't perform multiple iterations correctly!\n", __LINE__); @@ -550,11 +550,11 @@ H5_ATTR_PURE int iter_strcmp2(const void *s1, const void *s2) ** ****************************************************************/ static herr_t -liter_cb2(hid_t loc_id, const char *name, const H5L_info_t H5_ATTR_UNUSED *link_info, +liter_cb2(hid_t loc_id, const char *name, const H5L_info2_t H5_ATTR_UNUSED *link_info, void *opdata) { const iter_info *test_info = (const iter_info *)opdata; - H5O_info_t oinfo; + H5O_info2_t oinfo; herr_t ret; /* Generic return value */ if(HDstrcmp(name, test_info->name)) { @@ -565,8 +565,8 @@ liter_cb2(hid_t loc_id, const char *name, const H5L_info_t H5_ATTR_UNUSED *link_ /* * Get type of the object and check it. */ - ret = H5Oget_info_by_name2(loc_id, name, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(loc_id, name, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); if(test_info->type != oinfo.type) { TestErrPrintf("test_info->type = %d, oinfo.type = %d\n", test_info->type, (int)oinfo.type); @@ -683,14 +683,14 @@ test_iter_group_large(hid_t fapl) /* Iterate through the file to see members of the root group */ curr_name = &names[0]; - ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, NULL, liter_cb2, curr_name); - CHECK(ret, FAIL, "H5Literate"); + ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, NULL, liter_cb2, curr_name); + CHECK(ret, FAIL, "H5Literate2"); for(i = 1; i < 100; i++) { hsize_t idx = (hsize_t)i; curr_name = &names[i]; - ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb2, curr_name); - CHECK(ret, FAIL, "H5Literate"); + ret = H5Literate2(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb2, curr_name); + CHECK(ret, FAIL, "H5Literate2"); } /* end for */ /* Close file */ @@ -793,7 +793,7 @@ static void test_grp_memb_funcs(hid_t fapl) VERIFY(ginfo.nlinks, (NDATASETS + 2), "H5Gget_info"); for(i = 0; i < (int)ginfo.nlinks; i++) { - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ /* Test with NULL for name, to query length */ name_len = H5Lget_name_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, NULL, (size_t)NAMELEN, H5P_DEFAULT); @@ -809,8 +809,8 @@ static void test_grp_memb_funcs(hid_t fapl) obj_names[i] = HDstrdup(dataset_name); CHECK_PTR(obj_names[i], "strdup"); - ret = H5Oget_info_by_idx2(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_idx"); + ret = H5Oget_info_by_idx3(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_idx3"); if(!HDstrcmp(dataset_name, "grp")) VERIFY(oinfo.type, H5O_TYPE_GROUP, "H5Lget_name_by_idx"); @@ -890,21 +890,21 @@ static void test_links(hid_t fapl) /* Test these two functions, H5Oget_info_by_idx and H5Lget_name_by_idx */ for(i = 0; i < ginfo.nlinks; i++) { - H5O_info_t oinfo; /* Object info */ - H5L_info_t linfo; /* Link info */ + H5O_info2_t oinfo; /* Object info */ + H5L_info2_t linfo; /* Link info */ /* Get link name */ name_len = H5Lget_name_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, i, obj_name, (size_t)NAMELEN, H5P_DEFAULT); CHECK(name_len, FAIL, "H5Lget_name_by_idx"); /* Get link type */ - ret = H5Lget_info_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &linfo, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Lget_info_by_idx"); + ret = H5Lget_info_by_idx2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &linfo, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info_by_idx2"); /* Get object type */ if(linfo.type == H5L_TYPE_HARD) { - ret = H5Oget_info_by_idx2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_idx"); + ret = H5Oget_info_by_idx3(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_idx3"); } /* end if */ if(!HDstrcmp(obj_name, "g1.1")) @@ -1015,6 +1015,87 @@ static void test_corrupted_attnamelen(void) } /* test_corrupted_attnamelen() */ +#ifndef H5_NO_DEPRECATED_SYMBOLS +/**************************************************************** +** +** test_links_deprec(): Test soft and hard link iteration +** +****************************************************************/ +static void test_links_deprec(hid_t fapl) +{ + hid_t file; /* File ID */ + char obj_name[NAMELEN]; /* Names of the object in group */ + ssize_t name_len; /* Length of object's name */ + hid_t gid, gid1; + H5G_info_t ginfo; /* Buffer for querying object's info */ + hsize_t i; + herr_t ret; /* Generic return value */ + + /* Output message about test being performed */ + MESSAGE(5, ("Testing Soft and Hard Link Iteration Functionality Using Deprecated Routines\n")); + + /* Create the test file with the datasets */ + file = H5Fcreate(DATAFILE, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + CHECK(file, FAIL, "H5Fcreate"); + + /* create groups */ + gid = H5Gcreate2(file, "/g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(gid, FAIL, "H5Gcreate2"); + + gid1 = H5Gcreate2(file, "/g1/g1.1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(gid1, FAIL, "H5Gcreate2"); + + /* create soft and hard links to the group "/g1". */ + ret = H5Lcreate_soft("something", gid, "softlink", H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lcreate_soft"); + + ret = H5Lcreate_hard(gid, "/g1", H5L_SAME_LOC, "hardlink", H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lcreate_hard"); + + ret = H5Gget_info(gid, &ginfo); + CHECK(ret, FAIL, "H5Gget_info"); + VERIFY(ginfo.nlinks, 3, "H5Gget_info"); + + /* Test these two functions, H5Oget_info_by_idx and H5Lget_name_by_idx */ + for(i = 0; i < ginfo.nlinks; i++) { + H5O_info2_t oinfo; /* Object info */ + H5L_info2_t linfo; /* Link info */ + + /* Get link name */ + name_len = H5Lget_name_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, i, obj_name, (size_t)NAMELEN, H5P_DEFAULT); + CHECK(name_len, FAIL, "H5Lget_name_by_idx"); + + /* Get link type */ + ret = H5Lget_info_by_idx2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &linfo, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Lget_info_by_idx1"); + + /* Get object type */ + if(linfo.type == H5L_TYPE_HARD) { + ret = H5Oget_info_by_idx3(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_idx"); + } /* end if */ + + if(!HDstrcmp(obj_name, "g1.1")) + VERIFY(oinfo.type, H5O_TYPE_GROUP, "H5Lget_name_by_idx"); + else if(!HDstrcmp(obj_name, "hardlink")) + VERIFY(oinfo.type, H5O_TYPE_GROUP, "H5Lget_name_by_idx"); + else if(!HDstrcmp(obj_name, "softlink")) + VERIFY(linfo.type, H5L_TYPE_SOFT, "H5Lget_name_by_idx"); + else + CHECK(0, 0, "unknown object name"); + } /* end for */ + + ret = H5Gclose(gid); + CHECK(ret, FAIL, "H5Gclose"); + + ret = H5Gclose(gid1); + CHECK(ret, FAIL, "H5Gclose"); + + ret = H5Fclose(file); + CHECK(ret, FAIL, "H5Fclose"); +} /* test_links_deprec() */ +#endif + /**************************************************************** ** ** test_iterate(): Main iteration testing routine. @@ -1049,6 +1130,9 @@ test_iterate(void) test_iter_attr(new_format ? fapl2 : fapl, new_format); /* Test attribute iteration */ test_grp_memb_funcs(new_format ? fapl2 : fapl); /* Test group member information functions */ test_links(new_format ? fapl2 : fapl); /* Test soft and hard link iteration */ +#ifndef H5_NO_DEPRECATED_SYMBOLS + test_links_deprec(new_format ? fapl2 : fapl); /* Test soft and hard link iteration */ +#endif } /* end for */ /* Test the fix for issue HDFFV-10588 */ diff --git a/test/tmisc.c b/test/tmisc.c index d637802..0ea9c4c 100644 --- a/test/tmisc.c +++ b/test/tmisc.c @@ -128,15 +128,19 @@ typedef struct /* Definitions for misc. test #8 */ #define MISC8_FILE "tmisc8.h5" #define MISC8_DSETNAME1 "Dataset1" -#define MISC8_DSETNAME2 "Dataset2" -#define MISC8_DSETNAME3 "Dataset3" #define MISC8_DSETNAME4 "Dataset4" #define MISC8_DSETNAME5 "Dataset5" +#define MISC8_DSETNAME8 "Dataset8" + +#ifndef H5_HAVE_PARALLEL +#define MISC8_DSETNAME2 "Dataset2" +#define MISC8_DSETNAME3 "Dataset3" #define MISC8_DSETNAME6 "Dataset6" #define MISC8_DSETNAME7 "Dataset7" -#define MISC8_DSETNAME8 "Dataset8" #define MISC8_DSETNAME9 "Dataset9" #define MISC8_DSETNAME10 "Dataset10" +#endif + #define MISC8_RANK 2 #define MISC8_DIM0 50 #define MISC8_DIM1 50 @@ -309,6 +313,7 @@ typedef struct /* Definitions for misc. test #30 */ #define MISC30_FILE "tmisc30.h5" +#ifndef H5_NO_DEPRECATED_SYMBOLS /* Definitions for misc. test #31 */ #define MISC31_FILE "tmisc31.h5" #define MISC31_DSETNAME "dset" @@ -317,6 +322,7 @@ typedef struct #define MISC31_GROUPNAME "group" #define MISC31_PROPNAME "misc31_prop" #define MISC31_DTYPENAME "dtype" +#endif /* H5_NO_DEPRECATED_SYMBOLS */ /* Definitions for misc. test #33 */ /* Note that this test file is generated by "gen_bad_offset.c" */ @@ -649,7 +655,7 @@ static void test_misc4(void) { hid_t file1, file2, group1, group2, group3; - H5O_info_t oinfo1, oinfo2, oinfo3; + H5O_info2_t oinfo1, oinfo2, oinfo3; herr_t ret; /* Output message about test being performed */ @@ -674,12 +680,12 @@ test_misc4(void) CHECK(group3, FAIL, "H5Gcreate2"); /* Get the stat information for each group */ - ret = H5Oget_info_by_name2(file1, MISC4_GROUP_1, &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(file1, MISC4_GROUP_2, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - ret = H5Oget_info_by_name2(file2, MISC4_GROUP_1, &oinfo3, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); + ret = H5Oget_info_by_name3(file1, MISC4_GROUP_1, &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(file1, MISC4_GROUP_2, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); + ret = H5Oget_info_by_name3(file2, MISC4_GROUP_1, &oinfo3, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name3"); /* Verify that the fileno values are the same for groups from file1 */ VERIFY(oinfo1.fileno, oinfo2.fileno, "H5Oget_info_by_name"); @@ -2911,7 +2917,11 @@ test_misc18(void) hid_t sid; /* 'Space ID */ hid_t did1, did2; /* Dataset IDs */ hid_t aid; /* Attribute ID */ - H5O_info_t oinfo; /* Information about object */ +#ifndef H5_NO_DEPRECATED_SYMBOLS + H5O_info1_t old_oinfo; /* (deprecated) information about object */ +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + H5O_info2_t oinfo; /* Data model information about object */ + H5O_native_info_t ninfo; /* Native file format information about object */ char attr_name[32]; /* Attribute name buffer */ unsigned u; /* Local index variable */ herr_t ret; /* Generic return value */ @@ -2929,26 +2939,48 @@ test_misc18(void) CHECK(did1, FAIL, "H5Dcreate2"); /* Get object information */ - ret = H5Oget_info_by_name2(fid, MISC18_DSET1_NAME, &oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); + ret = H5Oget_info_by_name3(fid, MISC18_DSET1_NAME, &oinfo, H5O_INFO_NUM_ATTRS, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.nmesgs, 6, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.nchunks, 1, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.space.total, 272, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.space.free, 152, "H5Oget_info_by_name"); VERIFY(oinfo.num_attrs, 0, "H5Oget_info_by_name"); +#ifndef H5_NO_DEPRECATED_SYMBOLS + ret = H5Oget_info_by_name2(fid, MISC18_DSET1_NAME, &old_oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.nmesgs, 6, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.nchunks, 1, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.space.total, 272, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.space.free, 152, "H5Oget_info_by_name"); + VERIFY(old_oinfo.num_attrs, 0, "H5Oget_info_by_name"); +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + ret = H5Oget_native_info_by_name(fid, MISC18_DSET1_NAME, &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.nmesgs, 6, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.nchunks, 1, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.space.total, 272, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.space.free, 152, "H5Oget_native_info_by_name"); /* Create second dataset */ did2 = H5Dcreate2(fid, MISC18_DSET2_NAME, H5T_STD_U32LE, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); CHECK(did2, FAIL, "H5Dcreate2"); /* Get object information */ - ret = H5Oget_info_by_name2(fid, MISC18_DSET2_NAME, &oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); + ret = H5Oget_info_by_name3(fid, MISC18_DSET2_NAME, &oinfo, H5O_INFO_NUM_ATTRS, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.nmesgs, 6, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.nchunks, 1, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.space.total, 272, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.space.free, 152, "H5Oget_info_by_name"); VERIFY(oinfo.num_attrs, 0, "H5Oget_info_by_name"); +#ifndef H5_NO_DEPRECATED_SYMBOLS + ret = H5Oget_info_by_name2(fid, MISC18_DSET2_NAME, &old_oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.nmesgs, 6, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.nchunks, 1, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.space.total, 272, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.space.free, 152, "H5Oget_info_by_name"); + VERIFY(old_oinfo.num_attrs, 0, "H5Oget_info_by_name"); +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + ret = H5Oget_native_info_by_name(fid, MISC18_DSET2_NAME, &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.nmesgs, 6, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.nchunks, 1, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.space.total, 272, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.space.free, 152, "H5Oget_native_info_by_name"); /* Loop creating attributes on each dataset, flushing them to the file each time */ for(u = 0; u < 10; u++) { @@ -2975,22 +3007,44 @@ test_misc18(void) } /* end for */ /* Get object information for dataset #1 now */ - ret = H5Oget_info_by_name2(fid, MISC18_DSET1_NAME, &oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); + ret = H5Oget_info_by_name3(fid, MISC18_DSET1_NAME, &oinfo, H5O_INFO_NUM_ATTRS, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.nmesgs, 24, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.nchunks, 9, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.space.total, 888, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.space.free, 16, "H5Oget_info_by_name"); VERIFY(oinfo.num_attrs, 10, "H5Oget_info_by_name"); +#ifndef H5_NO_DEPRECATED_SYMBOLS + ret = H5Oget_info_by_name2(fid, MISC18_DSET1_NAME, &old_oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.nmesgs, 24, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.nchunks, 9, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.space.total, 888, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.space.free, 16, "H5Oget_info_by_name"); + VERIFY(old_oinfo.num_attrs, 10, "H5Oget_info_by_name"); +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + ret = H5Oget_native_info_by_name(fid, MISC18_DSET1_NAME, &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.nmesgs, 24, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.nchunks, 9, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.space.total, 888, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.space.free, 16, "H5Oget_native_info_by_name"); /* Get object information for dataset #2 now */ - ret = H5Oget_info_by_name2(fid, MISC18_DSET2_NAME, &oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); + ret = H5Oget_info_by_name3(fid, MISC18_DSET2_NAME, &oinfo, H5O_INFO_NUM_ATTRS, H5P_DEFAULT); CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.nmesgs, 24, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.nchunks, 9, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.space.total, 888, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.space.free, 16, "H5Oget_info_by_name"); VERIFY(oinfo.num_attrs, 10, "H5Oget_info_by_name"); +#ifndef H5_NO_DEPRECATED_SYMBOLS + ret = H5Oget_info_by_name2(fid, MISC18_DSET2_NAME, &old_oinfo, H5O_INFO_HDR|H5O_INFO_NUM_ATTRS, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.nmesgs, 24, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.nchunks, 9, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.space.total, 888, "H5Oget_info_by_name"); + VERIFY(old_oinfo.hdr.space.free, 16, "H5Oget_info_by_name"); + VERIFY(old_oinfo.num_attrs, 10, "H5Oget_info_by_name"); +#endif /* H5_NO_DEPRECATED_SYMBOLS */ + ret = H5Oget_native_info_by_name(fid, MISC18_DSET2_NAME, &ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_mative_info_by_name"); + VERIFY(ninfo.hdr.nmesgs, 24, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.nchunks, 9, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.space.total, 888, "H5Oget_native_info_by_name"); + VERIFY(ninfo.hdr.space.free, 16, "H5Oget_native_info_by_name"); /* Close second dataset */ ret = H5Dclose(did2); @@ -3915,7 +3969,7 @@ test_misc23(void) hid_t file_id=0, group_id=0, type_id=0, space_id=0, tmp_id=0, create_id=H5P_DEFAULT, access_id=H5P_DEFAULT; char objname[MISC23_NAME_BUF_SIZE]; /* Name of object */ - H5O_info_t oinfo; + H5O_info2_t oinfo; htri_t tri_status; ssize_t namelen; herr_t status; @@ -3998,9 +4052,9 @@ test_misc23(void) tmp_id = H5Gopen2(file_id, "/A/B01", H5P_DEFAULT); CHECK(tmp_id, FAIL, "H5Gopen2"); - status = H5Oget_info2(tmp_id, &oinfo, H5O_INFO_BASIC); - CHECK(status, FAIL, "H5Oget_info"); - VERIFY(oinfo.rc, 1, "H5Oget_info"); + status = H5Oget_info3(tmp_id, &oinfo, H5O_INFO_BASIC); + CHECK(status, FAIL, "H5Oget_info3"); + VERIFY(oinfo.rc, 1, "H5Oget_info3"); status = H5Gclose(tmp_id); CHECK(status, FAIL, "H5Gclose"); @@ -5274,18 +5328,18 @@ test_misc29(void) static int -test_misc30_get_info_cb(hid_t loc_id, const char *name, const H5L_info_t H5_ATTR_UNUSED *info, +test_misc30_get_info_cb(hid_t loc_id, const char *name, const H5L_info2_t H5_ATTR_UNUSED *info, void H5_ATTR_UNUSED *op_data) { - H5O_info_t object_info; + H5O_info2_t object_info; - return H5Oget_info_by_name2(loc_id, name, &object_info, H5O_INFO_BASIC, H5P_DEFAULT); + return H5Oget_info_by_name3(loc_id, name, &object_info, H5O_INFO_BASIC, H5P_DEFAULT); } static int test_misc30_get_info(hid_t loc_id) { - return H5Literate(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, test_misc30_get_info_cb, NULL); + return H5Literate2(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, test_misc30_get_info_cb, NULL); } @@ -5364,6 +5418,7 @@ test_misc30(void) static void test_misc31(void) { +#ifndef H5_NO_DEPRECATED_SYMBOLS hid_t file_id; /* File id */ hid_t space_id; /* Dataspace id */ hid_t dset_id; /* Dataset id */ @@ -5371,6 +5426,7 @@ test_misc31(void) hid_t group_id; /* Group id */ hid_t dtype_id; /* Datatype id */ herr_t ret; /* Generic return value */ +#endif /* H5_NO_DEPRECATED_SYMBOLS */ /* Output message about test being performed */ MESSAGE(5, ("Deprecated routines initialize after H5close()\n")); @@ -5533,7 +5589,7 @@ test_misc33(void) { hid_t fid = -1; /* File ID */ const char *testfile = H5_get_srcdir_filename(MISC33_FILE); /* Corrected test file name */ - H5O_info_t oinfo; /* Structure for object metadata information */ + H5O_info2_t oinfo; /* Structure for object metadata information */ herr_t ret; /* Generic return value */ /* Output message about test being performed */ @@ -5545,21 +5601,21 @@ test_misc33(void) /* Case (1) */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_name2(fid, "/soft_two", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret = H5Oget_info_by_name3(fid, "/soft_two", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; - VERIFY(ret, FAIL, "H5Oget_info_by_name"); + VERIFY(ret, FAIL, "H5Oget_info_by_name3"); /* Case (2) */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_name2(fid, "/dsetA", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret = H5Oget_info_by_name3(fid, "/dsetA", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; - VERIFY(ret, FAIL, "H5Oget_info_by_name"); + VERIFY(ret, FAIL, "H5Oget_info_by_name3"); /* Case (3) */ H5E_BEGIN_TRY { - ret = H5Oget_info_by_name2(fid, "/soft_one", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret = H5Oget_info_by_name3(fid, "/soft_one", &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); } H5E_END_TRY; - VERIFY(ret, FAIL, "H5Oget_info_by_name"); + VERIFY(ret, FAIL, "H5Oget_info_by_name3"); /* Close the file */ ret = H5Fclose(fid); @@ -5728,6 +5784,8 @@ cleanup_misc(void) HDremove(MISC28_FILE); HDremove(MISC29_COPY_FILE); HDremove(MISC30_FILE); +#ifndef H5_NO_DEPRECATED_SYMBOLS HDremove(MISC31_FILE); +#endif /* H5_NO_DEPRECATED_SYMBOLS */ } /* end cleanup_misc() */ diff --git a/test/trefer.c b/test/trefer.c index dec049e..fe237d7 100644 --- a/test/trefer.c +++ b/test/trefer.c @@ -566,9 +566,9 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) hsize_t *coords; /* Coordinate buffer */ hsize_t low[SPACE2_RANK]; /* Selection bounds */ hsize_t high[SPACE2_RANK]; /* Selection bounds */ - H5R_ref_t *wbuf, /* buffer to write to disk */ - *rbuf; /* buffer read from disk */ - H5R_ref_t nvrbuf[3]={{{0}},{{101}},{{-128}}}; /* buffer with non-valid refs */ + H5R_ref_t *wbuf, /* buffer to write to disk */ + *rbuf; /* buffer read from disk */ + H5R_ref_t nvrbuf[3]={{{{0}}},{{{101}}},{{{255}}}}; /* buffer with non-valid refs */ uint8_t *dwbuf, /* Buffer for writing numeric data to disk */ *drbuf; /* Buffer for reading numeric data from disk */ uint8_t *tu8; /* Temporary pointer to uint8 data */ @@ -580,7 +580,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) hid_t dset_NA; /* Dataset id for undefined reference */ hid_t space_NA; /* Dataspace id for undefined reference */ hsize_t dims_NA[1] = {1}; /* Dims array for undefined reference */ - H5R_ref_t rdata_NA[1]; /* Read buffer */ + H5R_ref_t rdata_NA[1]; /* Read buffer */ /* Output message about test being performed */ MESSAGE(5, ("Testing Dataset Region Reference Functions\n")); @@ -1380,7 +1380,7 @@ test_reference_obj_deleted(void) ** ****************************************************************/ static herr_t -test_deref_iter_op(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info_t H5_ATTR_UNUSED *info, +test_deref_iter_op(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info2_t H5_ATTR_UNUSED *info, void *op_data) { int *count = (int *)op_data; /* Pointer to name counter */ @@ -1430,7 +1430,7 @@ test_reference_group(void) H5R_ref_t rref; /* Reference to read */ H5G_info_t ginfo; /* Group info struct */ char objname[NAME_SIZE]; /* Buffer to store name */ - H5O_info_t oinfo; /* Object info struct */ + H5O_info2_t oinfo; /* Object info struct */ int count = 0; /* Count within iterated group */ ssize_t size; /* Name length */ herr_t ret; @@ -1508,7 +1508,7 @@ test_reference_group(void) CHECK(gid, H5I_INVALID_HID, "H5Ropen_object"); /* Iterate through objects in dereferenced group */ - ret = H5Literate(gid, H5_INDEX_NAME, H5_ITER_INC, NULL, test_deref_iter_op, &count); + ret = H5Literate2(gid, H5_INDEX_NAME, H5_ITER_INC, NULL, test_deref_iter_op, &count); CHECK(ret, FAIL, "H5Literate"); /* Various queries on the group opened */ @@ -1520,9 +1520,9 @@ test_reference_group(void) CHECK(size, (-1), "H5Lget_name_by_idx"); VERIFY_STR(objname, DSETNAME2, "H5Lget_name_by_idx"); - ret = H5Oget_info_by_idx2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_idx"); - VERIFY(oinfo.type, H5O_TYPE_DATASET, "H5Oget_info_by_idx"); + ret = H5Oget_info_by_idx3(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_idx3"); + VERIFY(oinfo.type, H5O_TYPE_DATASET, "H5Oget_info_by_idx3"); /* Unlink one of the objects in the dereferenced group */ ret = H5Ldelete(gid, GROUPNAME2, H5P_DEFAULT); diff --git a/test/trefer_deprec.c b/test/trefer_deprec.c index 6322894..a830314 100644 --- a/test/trefer_deprec.c +++ b/test/trefer_deprec.c @@ -517,7 +517,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) hsize_t high[SPACE2_RANK]; /* Selection bounds */ hdset_reg_ref_t *wbuf, /* buffer to write to disk */ *rbuf; /* buffer read from disk */ - hdset_reg_ref_t nvrbuf[3]={{{0}},{{101}},{{-128}}}; /* buffer with non-valid refs */ + hdset_reg_ref_t nvrbuf[3]={{{0}},{{101}},{{255}}}; /* buffer with non-valid refs */ uint8_t *dwbuf, /* Buffer for writing numeric data to disk */ *drbuf; /* Buffer for reading numeric data from disk */ uint8_t *tu8; /* Temporary pointer to uint8 data */ @@ -1313,7 +1313,7 @@ test_reference_obj_deleted(void) ** ****************************************************************/ static herr_t -test_deref_iter_op(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info_t H5_ATTR_UNUSED *info, +test_deref_iter_op(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info2_t H5_ATTR_UNUSED *info, void *op_data) { int *count = (int *)op_data; /* Pointer to name counter */ @@ -1363,7 +1363,7 @@ test_reference_group(void) hobj_ref_t rref; /* Reference to read */ H5G_info_t ginfo; /* Group info struct */ char objname[NAME_SIZE]; /* Buffer to store name */ - H5O_info_t oinfo; /* Object info struct */ + H5O_info2_t oinfo; /* Object info struct */ int count = 0; /* Count within iterated group */ ssize_t size; /* Name length */ herr_t ret; @@ -1438,7 +1438,7 @@ test_reference_group(void) CHECK(gid, FAIL, "H5Rdereference2"); /* Iterate through objects in dereferenced group */ - ret = H5Literate(gid, H5_INDEX_NAME, H5_ITER_INC, NULL, test_deref_iter_op, &count); + ret = H5Literate2(gid, H5_INDEX_NAME, H5_ITER_INC, NULL, test_deref_iter_op, &count); CHECK(ret, FAIL, "H5Literate"); /* Various queries on the group opened */ @@ -1450,9 +1450,9 @@ test_reference_group(void) CHECK(size, FAIL, "H5Lget_name_by_idx"); VERIFY_STR(objname, DSETNAME2, "H5Lget_name_by_idx"); - ret = H5Oget_info_by_idx2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_idx"); - VERIFY(oinfo.type, H5O_TYPE_DATASET, "H5Oget_info_by_idx"); + ret = H5Oget_info_by_idx3(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_idx3"); + VERIFY(oinfo.type, H5O_TYPE_DATASET, "H5Oget_info_by_idx3"); /* Unlink one of the objects in the dereferenced group */ ret = H5Ldelete(gid, GROUPNAME2, H5P_DEFAULT); diff --git a/test/trefer_shutdown.c b/test/trefer_shutdown.c new file mode 100644 index 0000000..89a44b3 --- /dev/null +++ b/test/trefer_shutdown.c @@ -0,0 +1,83 @@ +#include "h5test.h" + +int +main(int argc, char **argv) +{ + H5R_ref_t write_ref, read_ref; + hid_t fid; + hid_t did; + hid_t sid; + int i; + + if ((fid = H5Fcreate("HDFFV-10992.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) { + HDfprintf(stderr, "H5Fcreate failed\n"); + return 1; + } + + if ((sid = H5Screate(H5S_SCALAR)) < 0) { + HDfprintf(stderr, "H5Screate failed\n"); + return 1; + } + + /* Create a dataset of object references */ + if ((did = H5Dcreate2(fid, "dset", H5T_STD_REF, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) { + HDfprintf(stderr, "H5Dcreate failed\n"); + return 1; + } + + for (i = 0; i < 100; i++) { + /* Create reference to the root group */ + if (H5Rcreate_object(fid, "/dset", H5P_DEFAULT, &write_ref) < 0) { + HDfprintf(stderr, "H5Rcreate_object failed\n"); + return 1; + } + } + + /* Write reference to dataset */ + if (H5Dwrite(did, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, &write_ref) < 0) { + HDfprintf(stderr, "H5Dwrite failed\n"); + return 1; + } + + for (i = 0; i < 500; i++) { + /* Read reference back into different reference buffer */ + if (H5Dread(did, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, &read_ref) < 0) { + HDfprintf(stderr, "H5Dread failed\n"); + return 1; + } + } + + /* + * "Forget" to call H5Rdestroy on reference objects. If H5Rdestroy + * is called at least once on either reference object, or both + * objects, the infinite loop goes away. If H5Rdestroy is never + * called, the infinite loop will appear. + */ +#if 0 + if (H5Rdestroy(&write_ref) < 0) { + HDfprintf(stderr, "H5Rdestroy on reference write buffer failed\n"); + return 1; + } + if (H5Rdestroy(&read_ref) < 0) { + HDfprintf(stderr, "H5Rdestroy on reference read buffer failed\n"); + return 1; + } +#endif + + if (H5Sclose(sid) < 0) { + HDfprintf(stderr, "H5Sclose failed\n"); + return 1; + } + + if (H5Dclose(did) < 0) { + HDfprintf(stderr, "H5Dclose failed\n"); + return 1; + } + + if (H5Fclose(fid) < 0) { + HDfprintf(stderr, "H5Fclose failed\n"); + return 1; + } + + return 0; +} diff --git a/test/tselect.c b/test/tselect.c index 27bc36b..390f61f 100644 --- a/test/tselect.c +++ b/test/tselect.c @@ -25,7 +25,6 @@ #define H5S_TESTING #include "testhdf5.h" -#include "hdf5.h" #include "H5Spkg.h" /* Dataspaces */ #define FILENAME "tselect.h5" @@ -1613,7 +1612,7 @@ test_select_hyper_contig3(hid_t dset_type, hid_t xfer_plist) ****************************************************************/ static void verify_select_hyper_contig_dr__run_test(const uint16_t *cube_buf, - size_t cube_size, unsigned edge_size, unsigned cube_rank) + size_t H5_ATTR_NDEBUG_UNUSED cube_size, unsigned edge_size, unsigned cube_rank) { const uint16_t *cube_ptr; /* Pointer into the cube buffer */ uint16_t expected_value; /* Expected value in dataset */ diff --git a/test/tsohm.c b/test/tsohm.c index c126608..f39b5e5 100644 --- a/test/tsohm.c +++ b/test/tsohm.c @@ -743,7 +743,7 @@ size1_helper(hid_t file, const char *filename, hid_t fapl_id, hbool_t test_file_ */ static h5_stat_size_t getsize_testsize1(const char *filename, hid_t fcpl_id, hid_t fapl_id, - hbool_t test_file_closing, H5O_info_t *oinfo) + hbool_t test_file_closing, H5O_native_info_t *ninfo) { hid_t fid = H5I_INVALID_HID; herr_t ret; @@ -758,8 +758,8 @@ getsize_testsize1(const char *filename, hid_t fcpl_id, hid_t fapl_id, fid = size1_helper(fid, filename, fapl_id, test_file_closing); CHECK(fid, H5I_INVALID_HID, "size1_helper"); - ret = H5Oget_info_by_name2(fid, DSETNAME[0], oinfo, H5O_INFO_HDR, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Oget_info_by_name"); + ret = H5Oget_native_info_by_name(fid, DSETNAME[0], ninfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_native_info_by_name"); ret = H5Fclose(fid); CHECK(ret, FAIL, "H5Fclose"); @@ -807,7 +807,7 @@ test_sohm_size1(void) h5_stat_size_t sohm_final_filesize2; h5_stat_size_t sohm_btree_final_filesize2; - H5O_info_t oinfo; + H5O_native_info_t ninfo; unsigned num_indexes = 1; unsigned index_flags = H5O_SHMESG_DTYPE_FLAG; unsigned min_mesg_size = 50; @@ -866,10 +866,10 @@ test_sohm_size1(void) /* size of populated file, with different populating behaviors */ test_open_close = TRUE; - file_sizes[size_index++] = getsize_testsize1(FILENAME, fcpl_id, fapl_id, test_open_close, &oinfo); + file_sizes[size_index++] = getsize_testsize1(FILENAME, fcpl_id, fapl_id, test_open_close, &ninfo); test_open_close = FALSE; - file_sizes[size_index++] = getsize_testsize1(FILENAME, fcpl_id, fapl_id, test_open_close, &oinfo); - oh_sizes[oh_size_index++] = oinfo.hdr.space.total; + file_sizes[size_index++] = getsize_testsize1(FILENAME, fcpl_id, fapl_id, test_open_close, &ninfo); + oh_sizes[oh_size_index++] = ninfo.hdr.space.total; ret = H5Pclose(fcpl_id); CHECK_I(ret, "H5Pclose"); @@ -974,7 +974,7 @@ test_sohm_size_consistency_open_create(void) unsigned use_btree; hsize_t oh_size_open; hsize_t oh_size_create; - H5O_info_t oinfo; + H5O_native_info_t oinfo; unsigned num_indexes = 1; unsigned index_flags = H5O_SHMESG_DTYPE_FLAG; unsigned min_mesg_size = 50; @@ -1024,8 +1024,8 @@ test_sohm_size_consistency_open_create(void) CHECK_I(file, "size1_helper"); /* Get the size of a dataset object header */ - ret = H5Oget_info_by_name2(file, DSETNAME[0], &oinfo, H5O_INFO_HDR, H5P_DEFAULT); - CHECK_I(ret, "H5Oget_info_by_name"); + ret = H5Oget_native_info_by_name(file, DSETNAME[0], &oinfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK_I(ret, "H5Oget_native_info_by_name"); oh_size_open = oinfo.hdr.space.total; ret = H5Fclose(file); @@ -1039,8 +1039,8 @@ test_sohm_size_consistency_open_create(void) CHECK_I(file, "size1_helper"); /* Get the size of a dataset object header */ - ret = H5Oget_info_by_name2(file, DSETNAME[0], &oinfo, H5O_INFO_HDR, H5P_DEFAULT); - CHECK_I(ret, "H5Oget_info_by_name"); + ret = H5Oget_native_info_by_name(file, DSETNAME[0], &oinfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); + CHECK_I(ret, "H5Oget_native_info_by_name"); oh_size_create = oinfo.hdr.space.total; ret = H5Fclose(file); diff --git a/test/tvlstr.c b/test/tvlstr.c index 731270c..b93d646 100644 --- a/test/tvlstr.c +++ b/test/tvlstr.c @@ -861,13 +861,12 @@ static void test_write_same_element(void) hid_t file1, dataset1; hid_t mspace, fspace, dtype; hsize_t fdim[] = {SPACE1_DIM1}; - char *val[SPACE1_DIM1] = {"But", "reuniting", "is a", "great joy"}; + const char *wdata[SPACE1_DIM1] = {"Parting", "is such a", "sweet", "sorrow."}; + const char *val[SPACE1_DIM1] = {"But", "reuniting", "is a", "great joy"}; hsize_t marray[] = {NUMP}; hsize_t coord[SPACE1_RANK][NUMP]; herr_t ret; - char *wdata[SPACE1_DIM1] = {"Parting", "is such a", "sweet", "sorrow."}; - file1 = H5Fcreate(DATAFILE3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); CHECK(file1, FAIL, "H5Fcreate"); diff --git a/test/unlink.c b/test/unlink.c index 5199dcf..48dd79d 100644 --- a/test/unlink.c +++ b/test/unlink.c @@ -433,10 +433,11 @@ test_new_move(hid_t fapl) static int check_new_move(hid_t fapl) { - hid_t file; - H5O_info_t oi_hard1, oi_hard2; - char filename[1024]; - char linkval[1024]; + H5O_info2_t oi_hard1, oi_hard2; + hid_t file; + char filename[1024]; + char linkval[1024]; + int token_cmp; TESTING("check new move function"); @@ -446,15 +447,17 @@ check_new_move(hid_t fapl) FAIL_STACK_ERROR /* Get hard link info */ - if(H5Oget_info_by_name2(file, "/group2/group_new_name", &oi_hard1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(file, "/group2/group_new_name", &oi_hard1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - if(H5Oget_info_by_name2(file, "/group1/hard", &oi_hard2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(file, "/group1/hard", &oi_hard2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR /* Check hard links */ if(H5O_TYPE_GROUP != oi_hard1.type || H5O_TYPE_GROUP != oi_hard2.type) FAIL_PUTS_ERROR(" Unexpected object type, should have been a group") - if(H5F_addr_ne(oi_hard1.addr, oi_hard2.addr)) + if(H5Otoken_cmp(file, &oi_hard1.token, &oi_hard2.token, &token_cmp) < 0) + FAIL_PUTS_ERROR(" H5Otoken_cmp failed") + if(token_cmp) FAIL_PUTS_ERROR(" Hard link test failed. Link seems not to point to the expected file location.") /* Check soft links */ @@ -2156,7 +2159,7 @@ test_full_group_compact(hid_t fapl) { hid_t file_id = -1; hid_t gid = -1, gid2 = -1; /* Group IDs */ - H5O_info_t oi; /* Stat buffer for object */ + H5O_info2_t oi; /* Stat buffer for object */ char objname[128]; /* Buffer for name of objects to create */ char objname2[128]; /* Buffer for name of objects to create */ char filename[1024]; /* Buffer for filename */ @@ -2228,7 +2231,7 @@ test_full_group_compact(hid_t fapl) /* Check reference count on objects to keep */ for(u = 0; u < FULL_GROUP_NUM_KEEP; u++) { HDsprintf(objname, "/keep/keep %u\n", u); - if(H5Oget_info_by_name2(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(oi.rc != 2) TEST_ERROR } /* end for */ @@ -2245,7 +2248,7 @@ test_full_group_compact(hid_t fapl) /* Check reference count on objects to keep */ for(u = 0; u < FULL_GROUP_NUM_KEEP; u++) { HDsprintf(objname, "/keep/keep %u\n", u); - if(H5Oget_info_by_name2(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(oi.rc != 1) TEST_ERROR } /* end for */ @@ -2290,7 +2293,7 @@ test_full_group_dense(hid_t fapl) hid_t file_id = -1; hid_t gcpl = (-1); /* Group creation property list ID */ hid_t gid = -1, gid2 = -1; /* Group IDs */ - H5O_info_t oi; /* Stat buffer for object */ + H5O_info2_t oi; /* Stat buffer for object */ char objname[128]; /* Buffer for name of objects to create */ char objname2[128]; /* Buffer for name of objects to create */ char filename[1024]; /* Buffer for filename */ @@ -2374,7 +2377,7 @@ test_full_group_dense(hid_t fapl) /* Check reference count on objects to keep */ for(u = 0; u < FULL_GROUP_NUM_KEEP; u++) { HDsprintf(objname, "/keep/keep %u\n", u); - if(H5Oget_info_by_name2(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(oi.rc != 2) TEST_ERROR } /* end for */ @@ -2391,7 +2394,7 @@ test_full_group_dense(hid_t fapl) /* Check reference count on objects to keep */ for(u = 0; u < FULL_GROUP_NUM_KEEP; u++) { HDsprintf(objname, "/keep/keep %u\n", u); - if(H5Oget_info_by_name2(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Oget_info_by_name3(file_id, objname, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) FAIL_STACK_ERROR if(oi.rc != 1) TEST_ERROR } /* end for */ diff --git a/test/unregister.c b/test/unregister.c index ff116cf..db37f3e 100644 --- a/test/unregister.c +++ b/test/unregister.c @@ -95,11 +95,20 @@ test_unregister_filters(hid_t fapl_id) char filename[FILENAME_BUF_SIZE]; const hsize_t chunk_dims[2] = {FILTER_CHUNK_DIM1, FILTER_CHUNK_DIM2}; /* Chunk dimensions */ hsize_t dims[2]; - int data[DSET_DIM1][DSET_DIM2]; + int **buf = NULL; + int *buf_data = NULL; herr_t ret; TESTING("Unregistering filter"); + /* Set up data array */ + if(NULL == (buf_data = (int *)HDcalloc(DSET_DIM1 * DSET_DIM2, sizeof(int)))) + TEST_ERROR; + if(NULL == (buf = (int **)HDcalloc(DSET_DIM1, sizeof(buf_data)))) + TEST_ERROR; + for (i = 0; i < DSET_DIM1; i++) + buf[i] = buf_data + (i * DSET_DIM2); + /* Create first file */ h5_fixname(FILENAME[0], fapl_id, filename, sizeof(filename)); if((fid1 = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_id)) < 0) @@ -176,7 +185,7 @@ test_unregister_filters(hid_t fapl_id) /* Initialize the data for writing */ for(i = n = 0; i < DSET_DIM1; i++) for(j = 0; j < DSET_DIM2; j++) - data[i][j] = n++; + buf[i][j] = n++; /* Create the dataspace */ dims[0] = DSET_DIM1; @@ -189,7 +198,7 @@ test_unregister_filters(hid_t fapl_id) goto error; /* Write the data to the dataset */ - if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data) < 0) + if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_data) < 0) goto error; /* Unregister the filter before closing the dataset. It should fail */ @@ -211,7 +220,7 @@ test_unregister_filters(hid_t fapl_id) goto error; /* Write the data to the dataset */ - if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data) < 0) + if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_data) < 0) goto error; /* Close the dataset in the second file */ @@ -232,6 +241,9 @@ test_unregister_filters(hid_t fapl_id) if(H5Fclose(fid2) < 0) goto error; + HDfree(buf); + HDfree(buf_data); + PASSED(); return SUCCEED; @@ -247,6 +259,9 @@ error: H5Sclose(sid); } H5E_END_TRY; + HDfree(buf); + HDfree(buf_data); + return FAIL; } diff --git a/test/use_disable_mdc_flushes.c b/test/use_disable_mdc_flushes.c index 9cd202c..32a8244 100644 --- a/test/use_disable_mdc_flushes.c +++ b/test/use_disable_mdc_flushes.c @@ -108,7 +108,7 @@ parse_option(int argc, char * const argv[]) filename_g = optarg; break; case 'n': /* number of planes to write/read */ - if ((nplanes_g = HDatoi(optarg)) <= 0){ + if ((nplanes_g = (hsize_t)HDatoi(optarg)) <= 0){ HDfprintf(stderr, "bad number of planes %s, must be a positive integer\n", optarg); usage(progname_g); Hgoto_error(-1); @@ -193,17 +193,17 @@ setup_parameters(int argc, char * const argv[]) return(-1); } /* set chunk dims */ - chunkdims_g[0] = chunkplanes_g; - chunkdims_g[1]= chunkdims_g[2] = chunksize_g; + chunkdims_g[0] = (hsize_t)chunkplanes_g; + chunkdims_g[1]= chunkdims_g[2] = (hsize_t)chunksize_g; /* set dataset initial and max dims */ dims_g[0] = 0; max_dims_g[0] = H5S_UNLIMITED; - dims_g[1] = dims_g[2] = max_dims_g[1] = max_dims_g[2] = chunksize_g; + dims_g[1] = dims_g[2] = max_dims_g[1] = max_dims_g[2] = (hsize_t)chunksize_g; /* set nplanes */ if (nplanes_g == 0) - nplanes_g = chunksize_g; + nplanes_g = (hsize_t)chunksize_g; /* show parameters and return */ show_parameters(); @@ -299,7 +299,7 @@ write_file(void) hid_t dcpl; /* Dataset creation property list */ char *name; UC_CTYPE *buffer, *bufptr; /* data buffer */ - hsize_t cz=chunksize_g; /* Chunk size */ + hsize_t cz=(hsize_t)chunksize_g; /* Chunk size */ hid_t f_sid; /* dataset file space id */ hid_t m_sid; /* memory space id */ int rank; /* rank */ @@ -413,8 +413,13 @@ write_file(void) /* fill buffer with value i+1 */ bufptr = buffer; for (j=0; j<dims[1]; j++) - for (k=0; k<dims[2]; k++) - *bufptr++ = i; + for (k=0; k<dims[2]; k++) { + if(i > SHRT_MAX) { + HDfprintf(stderr, "rank(%d) of dataset overflow\n", rank); + return -1; + } + *bufptr++ = (short)i; + } /* extend the dataset by one for new plane */ dims[0]=i+1; @@ -317,7 +317,7 @@ test_api_get_ex_dcpl(test_api_config_t config, hid_t fapl, hid_t dcpl, hid_t dset = -1; /* Virtual dataset */ H5D_space_status_t space_status; /* Dataset space status */ void *plist_buf = NULL; /* Serialized property list buffer */ - H5O_info_t oinfo; /* Object info struct */ + H5O_native_info_t ninfo; /* Object info struct */ htri_t tri_ret; HDassert((config >= TEST_API_BASIC) && (config < TEST_API_NTESTS)); @@ -372,23 +372,23 @@ test_api_get_ex_dcpl(test_api_config_t config, hid_t fapl, hid_t dcpl, TEST_ERROR /* Test H5Oget_info returns correct metadata size */ - if(H5Oget_info2(dset, &oinfo, H5O_INFO_META_SIZE) < 0) + if(H5Oget_native_info(dset, &ninfo, H5O_NATIVE_INFO_META_SIZE) < 0) TEST_ERROR - if(oinfo.meta_size.obj.index_size != (hsize_t)0) + if(ninfo.meta_size.obj.index_size != (hsize_t)0) TEST_ERROR if(config == TEST_API_REOPEN_FILE) { - if(oinfo.meta_size.obj.heap_size != exp_meta_size) { - HDprintf("VDS metadata size: %llu Expected: %llu\n", (long long unsigned)oinfo.meta_size.obj.heap_size, (long long unsigned)exp_meta_size); + if(ninfo.meta_size.obj.heap_size != exp_meta_size) { + HDprintf("VDS metadata size: %llu Expected: %llu\n", (long long unsigned)ninfo.meta_size.obj.heap_size, (long long unsigned)exp_meta_size); TEST_ERROR } } else - if((oinfo.meta_size.obj.heap_size != exp_meta_size) - && (oinfo.meta_size.obj.heap_size != (hsize_t)0)) + if((ninfo.meta_size.obj.heap_size != exp_meta_size) + && (ninfo.meta_size.obj.heap_size != (hsize_t)0)) TEST_ERROR - if(oinfo.meta_size.attr.index_size != (hsize_t)0) + if(ninfo.meta_size.attr.index_size != (hsize_t)0) TEST_ERROR - if(oinfo.meta_size.attr.index_size != (hsize_t)0) + if(ninfo.meta_size.attr.index_size != (hsize_t)0) TEST_ERROR /* Test H5Dget_space_status */ @@ -1134,11 +1134,11 @@ error: static int test_vds_prefix_first(unsigned config, hid_t fapl) { - char srcfilename[FILENAME_BUF_SIZE]; - char srcfilename_map[FILENAME_BUF_SIZE]; - char vfilename[FILENAME_BUF_SIZE]; - char srcfilenamepct[FILENAME_BUF_SIZE]; - char srcfilenamepct_map[FILENAME_BUF_SIZE]; + char *srcfilename = NULL; + char *srcfilename_map = NULL; + char *vfilename = NULL; + char *srcfilenamepct = NULL; + char *srcfilenamepct_map = NULL; const char *srcfilenamepct_map_orig = "vds%%%%_src"; hid_t srcfile[4] = {-1, -1, -1, -1}; /* Files with source dsets */ hid_t vfile = -1; /* File with virtual dset */ @@ -1158,11 +1158,22 @@ test_vds_prefix_first(unsigned config, hid_t fapl) TESTING("basic virtual dataset I/O via H5Pset_vds_prefix(): all selection") - h5_fixname(FILENAME[0], fapl, vfilename, sizeof vfilename); - h5_fixname(FILENAME[8], fapl, srcfilename, sizeof srcfilename); - h5_fixname_printf(FILENAME[8], fapl, srcfilename_map, sizeof srcfilename_map); - h5_fixname(FILENAME[10], fapl, srcfilenamepct, sizeof srcfilenamepct); - h5_fixname_printf(srcfilenamepct_map_orig, fapl, srcfilenamepct_map, sizeof srcfilenamepct_map); + if((srcfilename = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilename_map = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((vfilename = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilenamepct = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilenamepct_map = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + + h5_fixname(FILENAME[0], fapl, vfilename, FILENAME_BUF_SIZE); + h5_fixname(FILENAME[8], fapl, srcfilename, FILENAME_BUF_SIZE); + h5_fixname_printf(FILENAME[8], fapl, srcfilename_map, FILENAME_BUF_SIZE); + h5_fixname(FILENAME[10], fapl, srcfilenamepct, FILENAME_BUF_SIZE); + h5_fixname_printf(srcfilenamepct_map_orig, fapl, srcfilenamepct_map, FILENAME_BUF_SIZE); /* create tmp directory and get current working directory path */ if (HDmkdir(TMPDIR, (mode_t)0755) < 0 && errno != EEXIST) @@ -1346,6 +1357,12 @@ test_vds_prefix_first(unsigned config, hid_t fapl) TEST_ERROR dcpl = -1; + HDfree(srcfilename); + HDfree(srcfilename_map); + HDfree(vfilename); + HDfree(srcfilenamepct); + HDfree(srcfilenamepct_map); + PASSED(); return 0; @@ -1369,6 +1386,12 @@ test_vds_prefix_first(unsigned config, hid_t fapl) if(HDsetenv("HDF5_VDS_PREFIX", "", 1) < 0) TEST_ERROR + HDfree(srcfilename); + HDfree(srcfilename_map); + HDfree(vfilename); + HDfree(srcfilenamepct); + HDfree(srcfilenamepct_map); + return 1; } /* end test_vds_prefix */ @@ -1386,12 +1409,12 @@ test_vds_prefix_first(unsigned config, hid_t fapl) static int test_basic_io(unsigned config, hid_t fapl) { - char srcfilename[FILENAME_BUF_SIZE]; - char srcfilename_map[FILENAME_BUF_SIZE]; - char vfilename[FILENAME_BUF_SIZE]; - char vfilename2[FILENAME_BUF_SIZE]; - char srcfilenamepct[FILENAME_BUF_SIZE]; - char srcfilenamepct_map[FILENAME_BUF_SIZE]; + char *srcfilename = NULL; + char *srcfilename_map = NULL; + char *vfilename = NULL; + char *vfilename2 = NULL; + char *srcfilenamepct = NULL; + char *srcfilenamepct_map = NULL; const char *srcfilenamepct_map_orig = "vds%%%%_src"; hid_t srcfile[4] = {-1, -1, -1, -1}; /* Files with source dsets */ hid_t vfile = -1; /* File with virtual dset */ @@ -1419,12 +1442,25 @@ test_basic_io(unsigned config, hid_t fapl) TESTING("basic virtual dataset I/O") - h5_fixname(FILENAME[0], fapl, vfilename, sizeof vfilename); - h5_fixname(FILENAME[1], fapl, vfilename2, sizeof vfilename2); - h5_fixname(FILENAME[2], fapl, srcfilename, sizeof srcfilename); - h5_fixname_printf(FILENAME[2], fapl, srcfilename_map, sizeof srcfilename_map); - h5_fixname(FILENAME[4], fapl, srcfilenamepct, sizeof srcfilenamepct); - h5_fixname_printf(srcfilenamepct_map_orig, fapl, srcfilenamepct_map, sizeof srcfilenamepct_map); + if((srcfilename = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilename_map = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((vfilename = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((vfilename2 = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilenamepct = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilenamepct_map = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + + h5_fixname(FILENAME[0], fapl, vfilename, FILENAME_BUF_SIZE); + h5_fixname(FILENAME[1], fapl, vfilename2, FILENAME_BUF_SIZE); + h5_fixname(FILENAME[2], fapl, srcfilename, FILENAME_BUF_SIZE); + h5_fixname_printf(FILENAME[2], fapl, srcfilename_map, FILENAME_BUF_SIZE); + h5_fixname(FILENAME[4], fapl, srcfilenamepct, FILENAME_BUF_SIZE); + h5_fixname_printf(srcfilenamepct_map_orig, fapl, srcfilenamepct_map, FILENAME_BUF_SIZE); /* Create DCPL */ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) @@ -4227,6 +4263,13 @@ test_basic_io(unsigned config, hid_t fapl) TEST_ERROR dcpl = -1; + HDfree(srcfilename); + HDfree(srcfilename_map); + HDfree(vfilename); + HDfree(vfilename2); + HDfree(srcfilenamepct); + HDfree(srcfilenamepct_map); + PASSED(); return 0; @@ -4247,6 +4290,13 @@ error: H5Pclose(dcpl); } H5E_END_TRY; + HDfree(srcfilename); + HDfree(srcfilename_map); + HDfree(vfilename); + HDfree(vfilename2); + HDfree(srcfilenamepct); + HDfree(srcfilenamepct_map); + return 1; } /* end test_basic_io() */ @@ -7286,15 +7336,15 @@ error: static int test_printf(unsigned config, hid_t fapl) { - char srcfilename[FILENAME_BUF_SIZE]; - char srcfilename_map[FILENAME_BUF_SIZE]; - char srcfilename2[FILENAME_BUF_SIZE]; - char srcfilename2_map[FILENAME_BUF_SIZE]; - char vfilename[FILENAME_BUF_SIZE]; - char printf_srcfilename_map[FILENAME_BUF_SIZE]; + char *srcfilename = NULL; + char *srcfilename_map = NULL; + char *srcfilename2 = NULL; + char *srcfilename2_map = NULL; + char *vfilename = NULL; + char *printf_srcfilename_map = NULL; + char *srcfilenamepct = NULL; + char *srcfilenamepct_map = NULL; const char *printf_srcfilename_map_orig = "vds_src_%b"; - char srcfilenamepct[FILENAME_BUF_SIZE]; - char srcfilenamepct_map[FILENAME_BUF_SIZE]; const char *srcfilenamepct_map_orig = "vds%%%%_src"; hid_t srcfile[4] = {-1, -1, -1, -1}; /* Files with source dsets */ hid_t vfile = -1; /* File with virtual dset */ @@ -7322,14 +7372,31 @@ test_printf(unsigned config, hid_t fapl) TESTING("virtual dataset I/O with printf source") - h5_fixname(FILENAME[0], fapl, vfilename, sizeof vfilename); - h5_fixname(FILENAME[2], fapl, srcfilename, sizeof srcfilename); - h5_fixname_printf(FILENAME[2], fapl, srcfilename_map, sizeof srcfilename_map); - h5_fixname(FILENAME[3], fapl, srcfilename2, sizeof srcfilename2); - h5_fixname_printf(FILENAME[2], fapl, srcfilename2_map, sizeof srcfilename2_map); - h5_fixname_printf(printf_srcfilename_map_orig, fapl, printf_srcfilename_map, sizeof printf_srcfilename_map); - h5_fixname(FILENAME[4], fapl, srcfilenamepct, sizeof srcfilenamepct); - h5_fixname_printf(srcfilenamepct_map_orig, fapl, srcfilenamepct_map, sizeof srcfilenamepct_map); + if((srcfilename = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilename_map = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilename2 = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilename2_map = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((vfilename = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((printf_srcfilename_map = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilenamepct = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + if((srcfilenamepct_map = (char *)HDcalloc(FILENAME_BUF_SIZE, sizeof(char))) == NULL) + TEST_ERROR; + + h5_fixname(FILENAME[0], fapl, vfilename, FILENAME_BUF_SIZE); + h5_fixname(FILENAME[2], fapl, srcfilename, FILENAME_BUF_SIZE); + h5_fixname_printf(FILENAME[2], fapl, srcfilename_map, FILENAME_BUF_SIZE); + h5_fixname(FILENAME[3], fapl, srcfilename2, FILENAME_BUF_SIZE); + h5_fixname_printf(FILENAME[2], fapl, srcfilename2_map, FILENAME_BUF_SIZE); + h5_fixname_printf(printf_srcfilename_map_orig, fapl, printf_srcfilename_map, FILENAME_BUF_SIZE); + h5_fixname(FILENAME[4], fapl, srcfilenamepct, FILENAME_BUF_SIZE); + h5_fixname_printf(srcfilenamepct_map_orig, fapl, srcfilenamepct_map, FILENAME_BUF_SIZE); /* Create DCPL */ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) @@ -10940,6 +11007,15 @@ test_printf(unsigned config, hid_t fapl) TEST_ERROR memspace = -1; + HDfree(srcfilename); + HDfree(srcfilename_map); + HDfree(srcfilename2); + HDfree(srcfilename2_map); + HDfree(vfilename); + HDfree(printf_srcfilename_map); + HDfree(srcfilenamepct); + HDfree(srcfilenamepct_map); + PASSED(); return 0; @@ -10960,6 +11036,15 @@ error: H5Pclose(dapl); } H5E_END_TRY; + HDfree(srcfilename); + HDfree(srcfilename_map); + HDfree(srcfilename2); + HDfree(srcfilename2_map); + HDfree(vfilename); + HDfree(printf_srcfilename_map); + HDfree(srcfilenamepct); + HDfree(srcfilenamepct_map); + return 1; } /* end test_printf() */ diff --git a/test/vds_swmr.h b/test/vds_swmr.h index eb2dcf4..edb01bc 100644 --- a/test/vds_swmr.h +++ b/test/vds_swmr.h @@ -84,31 +84,17 @@ #define N_PLANES_TO_WRITE 25 /* Planes */ -static hsize_t PLANES[N_SOURCES][RANK] = { - {1, SM_HEIGHT, WIDTH}, - {1, LG_HEIGHT, WIDTH}, - {1, SM_HEIGHT, WIDTH}, - {1, LG_HEIGHT, WIDTH}, - {1, SM_HEIGHT, WIDTH}, - {1, LG_HEIGHT, WIDTH} -}; +H5TEST_DLLVAR hsize_t PLANES[N_SOURCES][RANK]; /* File names for source datasets */ -static char FILE_NAMES[N_SOURCES][NAME_LEN] = { - {"vds_swmr_src_a.h5"}, - {"vds_swmr_src_b.h5"}, - {"vds_swmr_src_c.h5"}, - {"vds_swmr_src_d.h5"}, - {"vds_swmr_src_e.h5"}, - {"vds_swmr_src_f.h5"} -}; +H5TEST_DLLVAR char FILE_NAMES[N_SOURCES][NAME_LEN]; /* VDS file name */ -static char VDS_FILE_NAME[NAME_LEN] = "vds_swmr.h5"; +H5TEST_DLLVAR char VDS_FILE_NAME[NAME_LEN]; /* Dataset names */ -static char SOURCE_DSET_PATH[NAME_LEN] = "/source_dset"; -static char VDS_DSET_NAME[NAME_LEN] = "vds_dset"; +H5TEST_DLLVAR char SOURCE_DSET_PATH[NAME_LEN]; +H5TEST_DLLVAR char VDS_DSET_NAME[NAME_LEN]; /* Fill values */ #endif /* VDS_SWMR_H */ diff --git a/test/vds_swmr_gen.c b/test/vds_swmr_gen.c index 2589653..b14ecc2 100644 --- a/test/vds_swmr_gen.c +++ b/test/vds_swmr_gen.c @@ -145,11 +145,13 @@ main(void) if(H5Sselect_hyperslab(src_sid, H5S_SELECT_SET, start, NULL, MAX_DIMS[i], NULL) < 0) TEST_ERROR - start[1] = map_start; + start[1] = (hsize_t)map_start; if(H5Sselect_hyperslab(vds_sid, H5S_SELECT_SET, start, NULL, MAX_DIMS[i], NULL) < 0) TEST_ERROR - map_start += PLANES[i][1]; + if(PLANES[i][1] > INT_MAX) + TEST_ERROR + map_start += (int)PLANES[i][1]; /* Add VDS mapping */ if(H5Pset_virtual(vds_dcplid, vds_sid, FILE_NAMES[i], diff --git a/test/vds_swmr_reader.c b/test/vds_swmr_reader.c index eb9a82b..1ee65a0 100644 --- a/test/vds_swmr_reader.c +++ b/test/vds_swmr_reader.c @@ -45,8 +45,10 @@ main(void) TEST_ERROR /* Create the read buffer */ - n_elements = VDS_PLANE[1] * VDS_PLANE[2]; - size = n_elements * sizeof(int); + if(VDS_PLANE[1] * VDS_PLANE[2] > INT_MAX) + TEST_ERROR + n_elements = (int)(VDS_PLANE[1] * VDS_PLANE[2]); + size = (size_t)n_elements * sizeof(int); if(NULL == (buffer = (int *)HDmalloc(size))) TEST_ERROR @@ -842,8 +842,7 @@ error: * * Purpose: Tests the file handle interface for FAMILY driver * - * Return: Success: 0 - * Failure: -1 + * Return: SUCCEED/FAIL * * Programmer: Raymond Lu * Tuesday, Sept 24, 2002 @@ -861,12 +860,21 @@ test_family(void) char dname[]="dataset"; unsigned int i, j; int *fhandle=NULL, *fhandle2=NULL; - int buf[FAMILY_NUMBER][FAMILY_SIZE]; + int **buf = NULL; + int *buf_data = NULL; hsize_t dims[2]={FAMILY_NUMBER, FAMILY_SIZE}; hsize_t file_size; TESTING("FAMILY file driver"); + /* Set up data array */ + if(NULL == (buf_data = (int *)HDcalloc(FAMILY_NUMBER * FAMILY_SIZE, sizeof(int)))) + TEST_ERROR; + if(NULL == (buf = (int **)HDcalloc(FAMILY_NUMBER, sizeof(buf_data)))) + TEST_ERROR; + for (i = 0; i < FAMILY_NUMBER; i++) + buf[i] = buf_data + (i * FAMILY_SIZE); + /* Set property list and file name for FAMILY driver */ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR; @@ -890,7 +898,7 @@ test_family(void) | H5FD_FEAT_AGGREGATE_SMALLDATA)) TEST_ERROR - if((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) + if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR; if(H5Fclose(file) < 0) @@ -905,7 +913,7 @@ test_family(void) if(H5Pset_fapl_family(fapl, (hsize_t)H5F_FAMILY_DEFAULT, H5P_DEFAULT) < 0) TEST_ERROR; - if((file=H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) + if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) TEST_ERROR; /* Check file size API */ @@ -917,7 +925,7 @@ test_family(void) TEST_ERROR; /* Create and write dataset */ - if((space=H5Screate_simple(2, dims, NULL)) < 0) + if((space = H5Screate_simple(2, dims, NULL)) < 0) TEST_ERROR; /* Retrieve the access property list... */ @@ -932,14 +940,14 @@ test_family(void) if (H5Pclose(access_fapl) < 0) TEST_ERROR; - if((dset=H5Dcreate2(file, dname, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if((dset = H5Dcreate2(file, dname, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR; for(i = 0; i < FAMILY_NUMBER; i++) for(j = 0; j < FAMILY_SIZE; j++) buf[i][j] = (int)((i * 10000) + j); - if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_data) < 0) TEST_ERROR; /* check file handle API */ @@ -1004,8 +1012,11 @@ test_family(void) if(H5Pclose(fapl) < 0) TEST_ERROR; + HDfree(buf); + HDfree(buf_data); + PASSED(); - return 0; + return SUCCEED; error: H5E_BEGIN_TRY { @@ -1015,8 +1026,12 @@ error: H5Pclose(fapl2); H5Fclose(file); } H5E_END_TRY; - return -1; -} + + HDfree(buf); + HDfree(buf_data); + + return FAIL; +} /* end test_family() */ /*------------------------------------------------------------------------- @@ -1136,8 +1151,7 @@ error: * * Purpose: Actually use the member fapl input to the member vfd. * - * Return: Success: 0 - * Failure: -1 + * Return: SUCCEED/FAIL * * Programmer: Jacob Smith * 21 May 2019 @@ -1147,108 +1161,91 @@ error: static herr_t test_family_member_fapl(void) { - hid_t file = H5I_INVALID_HID; - hid_t fapl_id = H5I_INVALID_HID; - hid_t memb_fapl_id = H5I_INVALID_HID; - hid_t space = H5I_INVALID_HID; - hid_t dset = H5I_INVALID_HID; + hid_t file = H5I_INVALID_HID; + hid_t fapl_id = H5I_INVALID_HID; + hid_t memb_fapl_id = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; + hid_t dset = H5I_INVALID_HID; char filename[1024]; - char dname[] = "dataset"; - unsigned i = 0; - unsigned j = 0; - int buf[FAMILY_NUMBER][FAMILY_SIZE]; - hsize_t dims[2] = {FAMILY_NUMBER, FAMILY_SIZE}; + char dname[] = "dataset"; + unsigned i = 0; + unsigned j = 0; + int **buf = NULL; + int *buf_data = NULL; + hsize_t dims[2] = {FAMILY_NUMBER, FAMILY_SIZE}; TESTING("Family member FAPL"); - fapl_id = H5Pcreate(H5P_FILE_ACCESS); - if (H5I_INVALID_HID == fapl_id) { + /* Set up data array */ + if(NULL == (buf_data = (int *)HDcalloc(FAMILY_NUMBER * FAMILY_SIZE, sizeof(int)))) TEST_ERROR; - } - memb_fapl_id = H5Pcreate(H5P_FILE_ACCESS); - if (H5I_INVALID_HID == memb_fapl_id) { + if(NULL == (buf = (int **)HDcalloc(FAMILY_NUMBER, sizeof(buf_data)))) TEST_ERROR; - } - if (H5Pset_fapl_sec2(memb_fapl_id) == FAIL) { + for (i = 0; i < FAMILY_NUMBER; i++) + buf[i] = buf_data + (i * FAMILY_SIZE); + + if((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) == H5I_INVALID_HID) TEST_ERROR; - } - if (H5Pset_fapl_family(fapl_id, (hsize_t)FAMILY_SIZE, memb_fapl_id) == FAIL) { + + if((memb_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) == H5I_INVALID_HID) TEST_ERROR; - } + + if (H5Pset_fapl_sec2(memb_fapl_id) == FAIL) + TEST_ERROR; + if (H5Pset_fapl_family(fapl_id, (hsize_t)FAMILY_SIZE, memb_fapl_id) == FAIL) + TEST_ERROR; + h5_fixname(FILENAME[2], fapl_id, filename, sizeof(filename)); - file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_id); - if (H5I_INVALID_HID == file) { + if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_id)) == H5I_INVALID_HID) TEST_ERROR; - } - space = H5Screate_simple(2, dims, NULL); - if (H5I_INVALID_HID == space) { + if((space = H5Screate_simple(2, dims, NULL)) == H5I_INVALID_HID) TEST_ERROR; - } /* Create and write to dataset, then close file. */ - dset = H5Dcreate2( - file, - dname, - H5T_NATIVE_INT, - space, - H5P_DEFAULT, - H5P_DEFAULT, - H5P_DEFAULT); - if (H5I_INVALID_HID == dset) { + if((dset = H5Dcreate2(file, dname, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) == H5I_INVALID_HID) TEST_ERROR; - } + for (i = 0; i < FAMILY_NUMBER; i++) { for (j = 0; j < FAMILY_SIZE; j++) { buf[i][j] = (int)((i * 10000) + j); } } - if (H5Dwrite(dset, - H5T_NATIVE_INT, - H5S_ALL, - H5S_ALL, - H5P_DEFAULT, - buf) - == FAIL) - { + + if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_data) == FAIL) TEST_ERROR; - } - if (H5Dclose(dset) == FAIL) { + + if (H5Dclose(dset) == FAIL) TEST_ERROR; - } - if (H5Sclose(space) == FAIL) { + if (H5Sclose(space) == FAIL) TEST_ERROR; - } - if (H5Fclose(file) == FAIL) { + if (H5Fclose(file) == FAIL) TEST_ERROR; - } /* "Close" member FAPL at top level and re-open file. * Should succeed, with library managing reference count properly */ - if (H5Pclose(memb_fapl_id) == FAIL) { + if (H5Pclose(memb_fapl_id) == FAIL) TEST_ERROR; - } - file = H5Fopen(filename, H5F_ACC_RDWR, fapl_id); - if (H5I_INVALID_HID == file) { + if ((file = H5Fopen(filename, H5F_ACC_RDWR, fapl_id)) == H5I_INVALID_HID) TEST_ERROR; - } - if (H5Fclose(file) == FAIL) { + if (H5Fclose(file) == FAIL) TEST_ERROR; - } h5_delete_test_file(FILENAME[2], fapl_id); - if (H5Pclose(fapl_id) == FAIL) { + if (H5Pclose(fapl_id) == FAIL) TEST_ERROR; - } + + HDfree(buf); + HDfree(buf_data); PASSED(); - return 0; + return SUCCEED; error: H5E_BEGIN_TRY { @@ -1259,7 +1256,10 @@ error: H5Fclose(file); } H5E_END_TRY; - return -1; + HDfree(buf); + HDfree(buf_data); + + return FAIL; } /* end test_family_member_fapl() */ @@ -1337,10 +1337,19 @@ test_multi(void) char dname[]="dataset"; char meta[] = "this is some metadata on this file"; int i, j; - int buf[MULTI_SIZE][MULTI_SIZE]; + int **buf = NULL; + int *buf_data = NULL; TESTING("MULTI file driver"); + /* Set up data array */ + if(NULL == (buf_data = (int *)HDcalloc(MULTI_SIZE * MULTI_SIZE, sizeof(int)))) + TEST_ERROR; + if(NULL == (buf = (int **)HDcalloc(MULTI_SIZE, sizeof(buf_data)))) + TEST_ERROR; + for (i = 0; i < MULTI_SIZE; i++) + buf[i] = buf_data + (i * MULTI_SIZE); + /* Set file access property list for MULTI driver */ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR; @@ -1443,7 +1452,7 @@ test_multi(void) for(i=0; i<MULTI_SIZE; i++) for(j=0; j<MULTI_SIZE; j++) buf[i][j] = i*10000+j; - if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_data) < 0) TEST_ERROR; if((fapl2=H5Pcreate(H5P_FILE_ACCESS)) < 0) @@ -1521,6 +1530,9 @@ test_multi(void) if(H5Pclose(fapl) < 0) TEST_ERROR; + HDfree(buf); + HDfree(buf_data); + PASSED(); return SUCCEED; @@ -1534,6 +1546,10 @@ error: H5Fclose(file); H5Aclose(attr); } H5E_END_TRY; + + HDfree(buf); + HDfree(buf_data); + return FAIL; } /* end test_multi() */ @@ -1572,10 +1588,19 @@ test_multi_compat(void) char sv[H5FD_MEM_NTYPES][32]; hsize_t dims[2]={MULTI_SIZE, MULTI_SIZE}; int i, j; - int buf[MULTI_SIZE][MULTI_SIZE]; + int **buf = NULL; + int *buf_data = NULL; TESTING("MULTI file driver backward compatibility"); + /* Set up data array */ + if(NULL == (buf_data = (int *)HDcalloc(MULTI_SIZE * MULTI_SIZE, sizeof(int)))) + TEST_ERROR; + if(NULL == (buf = (int **)HDcalloc(MULTI_SIZE, sizeof(buf_data)))) + TEST_ERROR; + for (i = 0; i < MULTI_SIZE; i++) + buf[i] = buf_data + (i * MULTI_SIZE); + /* Set file access property list for MULTI driver */ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR; @@ -1659,7 +1684,7 @@ test_multi_compat(void) for(i=0; i<MULTI_SIZE; i++) for(j=0; j<MULTI_SIZE; j++) buf[i][j] = i*10000+j; - if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_data) < 0) TEST_ERROR; if(H5Dclose(dset) < 0) @@ -1697,9 +1722,12 @@ test_multi_compat(void) if(H5Pclose(fapl) < 0) TEST_ERROR; + HDfree(buf); + HDfree(buf_data); + PASSED(); - return 0; + return SUCCEED; error: H5E_BEGIN_TRY { @@ -1708,8 +1736,12 @@ error: H5Pclose(fapl); H5Fclose(file); } H5E_END_TRY; - return -1; -} + + HDfree(buf); + HDfree(buf_data); + + return FAIL; +} /* end test_multi_compat() */ /*------------------------------------------------------------------------- @@ -141,6 +141,11 @@ static const H5VL_class_t fake_vol_g = { NULL, /* specific */ NULL /* optional */ }, + { /* token_cls */ + NULL, /* cmp */ + NULL, /* to_str */ + NULL /* from_str */ + }, NULL /* optional */ }; @@ -228,7 +233,7 @@ test_vol_registration(void) TEST_ERROR; /* Try to unregister the native VOL connector (should fail) */ - if (H5I_INVALID_HID == (native_id = H5VLget_connector_id(H5VL_NATIVE_NAME))) + if (H5I_INVALID_HID == (native_id = H5VLget_connector_id_by_name(H5VL_NATIVE_NAME))) TEST_ERROR; H5E_BEGIN_TRY { ret = H5VLunregister_connector(native_id); @@ -870,7 +875,7 @@ test_basic_object_operation(void) hid_t oid = H5I_INVALID_HID; char filename[1024]; - H5O_info_t object_info; + H5O_info2_t object_info; TESTING("Basic VOL object operations"); @@ -884,11 +889,11 @@ test_basic_object_operation(void) TEST_ERROR; /* H5Oget_info */ - if (H5Oget_info2(fid, &object_info, H5O_INFO_ALL) < 0) + if (H5Oget_info3(fid, &object_info, H5O_INFO_ALL) < 0) TEST_ERROR; /* H5Oget_info_by_name */ - if (H5Oget_info_by_name2(fid, NATIVE_VOL_TEST_GROUP_NAME, &object_info, H5O_INFO_ALL, H5P_DEFAULT) < 0) + if (H5Oget_info_by_name3(fid, NATIVE_VOL_TEST_GROUP_NAME, &object_info, H5O_INFO_ALL, H5P_DEFAULT) < 0) TEST_ERROR; /* H5Oexists_by_name */ diff --git a/test/vol_plugin.c b/test/vol_plugin.c index 236a67e..e4f171b 100644 --- a/test/vol_plugin.c +++ b/test/vol_plugin.c @@ -233,7 +233,7 @@ test_getters(void) TEST_ERROR; /* Get the connector's ID */ - if((vol_id_out = H5VLget_connector_id(NULL_VOL_CONNECTOR_NAME)) < 0) + if((vol_id_out = H5VLget_connector_id_by_name(NULL_VOL_CONNECTOR_NAME)) < 0) TEST_ERROR; if(vol_id != vol_id_out) FAIL_PUTS_ERROR("VOL connector IDs don't match"); diff --git a/testpar/CMakeLists.txt b/testpar/CMakeLists.txt index 9795c65..3e4957d 100644 --- a/testpar/CMakeLists.txt +++ b/testpar/CMakeLists.txt @@ -79,4 +79,6 @@ foreach (h5_testp ${H5P_TESTS}) ADD_H5P_EXE(${h5_testp}) endforeach () -include (CMakeTests.cmake) +if (HDF5_TEST_PARALLEL) + include (CMakeTests.cmake) +endif () diff --git a/testpar/t_2Gio.c b/testpar/t_2Gio.c index d48dfca..977a154 100644 --- a/testpar/t_2Gio.c +++ b/testpar/t_2Gio.c @@ -312,61 +312,61 @@ slab_set(int mpi_rank, int mpi_size, hsize_t start[], hsize_t count[], switch (mode) { case BYROW: /* Each process takes a slabs of rows. */ - block[0] = dim0 / mpi_size; - block[1] = dim1; + block[0] = (hsize_t)dim0 / (hsize_t)mpi_size; + block[1] = (hsize_t)dim1; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; - start[0] = mpi_rank * block[0]; + start[0] = (hsize_t)mpi_rank * block[0]; start[1] = 0; if (VERBOSE_MED) HDprintf("slab_set BYROW\n"); break; case BYCOL: /* Each process takes a block of columns. */ - block[0] = dim0; - block[1] = dim1 / mpi_size; + block[0] = (hsize_t)dim0; + block[1] = (hsize_t)dim1 / (hsize_t)mpi_size; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; start[0] = 0; - start[1] = mpi_rank * block[1]; + start[1] = (hsize_t)mpi_rank * block[1]; if (VERBOSE_MED) HDprintf("slab_set BYCOL\n"); break; case ZROW: /* Similar to BYROW except process 0 gets 0 row */ - block[0] = (mpi_rank ? dim0 / mpi_size : 0); - block[1] = dim1; + block[0] = (hsize_t)(mpi_rank ? dim0 / mpi_size : 0); + block[1] = (hsize_t)dim1; stride[0] = (mpi_rank ? block[0] : 1); /* avoid setting stride to 0 */ stride[1] = block[1]; count[0] = 1; count[1] = 1; - start[0] = (mpi_rank ? mpi_rank * block[0] : 0); + start[0] = (hsize_t)(mpi_rank ? (hsize_t)mpi_rank * block[0] : 0); start[1] = 0; if (VERBOSE_MED) HDprintf("slab_set ZROW\n"); break; case ZCOL: /* Similar to BYCOL except process 0 gets 0 column */ - block[0] = dim0; - block[1] = (mpi_rank ? dim1 / mpi_size : 0); + block[0] = (hsize_t)dim0; + block[1] = (hsize_t)(mpi_rank ? dim1 / mpi_size : 0); stride[0] = block[0]; stride[1] = (mpi_rank ? block[1] : 1); /* avoid setting stride to 0 */ count[0] = 1; count[1] = 1; start[0] = 0; - start[1] = (mpi_rank ? mpi_rank * block[1] : 0); + start[1] = (hsize_t)(mpi_rank ? (hsize_t)mpi_rank * block[1] : 0); if (VERBOSE_MED) HDprintf("slab_set ZCOL\n"); break; default: /* Unknown mode. Set it to cover the whole dataset. */ HDprintf("unknown slab_set mode (%d)\n", mode); - block[0] = dim0; - block[1] = dim1; + block[0] = (hsize_t)dim0; + block[1] = (hsize_t)dim1; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; @@ -552,7 +552,7 @@ dataset_vrfy(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[] #define H5FILE_NAME "hugefile.h5" #define DATASETNAME "dataset" -int MpioTest2G( MPI_Comm comm ) +static int MpioTest2G( MPI_Comm comm ) { /* * HDF5 APIs definitions @@ -634,7 +634,8 @@ int MpioTest2G( MPI_Comm comm ) status = H5Pset_dxpl_mpio(plist_id, H5FD_MPIO_COLLECTIVE); VRFY((status >= 0), ""); - size_t slice_per_process = (shape[0] + mpi_size - 1) / mpi_size; + size_t slice_per_process; + H5_CHECKED_ASSIGN(slice_per_process, size_t, (shape[0] + (hsize_t)mpi_size - 1) / (hsize_t)mpi_size, hsize_t); size_t data_size = slice_per_process * shape[1] * shape[2]; size_t data_size_bytes = sizeof(int) * data_size; data = HDmalloc(data_size_bytes); @@ -645,7 +646,7 @@ int MpioTest2G( MPI_Comm comm ) } hsize_t h5_counts[3] = { slice_per_process, shape[1], shape[2] }; - hsize_t h5_offsets[3] = { mpi_rank * slice_per_process, 0, 0}; + hsize_t h5_offsets[3] = { (size_t)mpi_rank * slice_per_process, 0, 0}; hid_t filedataspace = H5Screate_simple(3, shape, NULL); VRFY((filedataspace >= 0), "H5Screate_simple succeeded"); @@ -755,8 +756,8 @@ dataset_writeInd(void) * and the slabs local to the MPI process. * ------------------------------------------- */ /* setup dimensionality object */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple (MAX_RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -876,9 +877,9 @@ dataset_readInd(void) MPI_Comm_rank(test_comm,&mpi_rank); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); - data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded"); /* setup file access template */ @@ -1007,12 +1008,12 @@ dataset_writeAll(void) MPI_Comm_rank(test_comm,&mpi_rank); /* set up the coords array selection */ - num_points = dim1; - coords = (hsize_t *)HDmalloc(dim1 * MAX_RANK * sizeof(hsize_t)); + num_points = (size_t)dim1; + coords = (hsize_t *)HDmalloc((size_t)dim1 * (size_t)MAX_RANK * sizeof(hsize_t)); VRFY((coords != NULL), "coords malloc succeeded"); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); /* ------------------- @@ -1036,8 +1037,8 @@ dataset_writeAll(void) * and create the dataset * ------------------------- */ /* setup 2-D dimensionality object */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple (MAX_RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -1338,16 +1339,16 @@ dataset_writeAll(void) if(data_array1) free(data_array1); - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 malloc succeeded"); block[0] = 1; - block[1] = dim1; + block[1] = (hsize_t)dim1; stride[0] = 1; - stride[1] = dim1; + stride[1] = (hsize_t)dim1; count[0] = 1; count[1] = 1; - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank; start[1] = 0; dataset_fill(start, block, data_array1); @@ -1394,7 +1395,7 @@ dataset_writeAll(void) /* Dataset6: point selection in File - Point selection in Memory*/ /* create a file dataspace independently */ - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank; start[1] = 0; point_set (start, count, stride, block, num_points, coords, OUT_OF_ORDER); file_dataspace = H5Dget_space (dataset6); @@ -1432,7 +1433,7 @@ dataset_writeAll(void) /* Dataset7: point selection in File - All selection in Memory*/ /* create a file dataspace independently */ - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank; start[1] = 0; point_set (start, count, stride, block, num_points, coords, IN_ORDER); file_dataspace = H5Dget_space (dataset7); @@ -1538,14 +1539,14 @@ dataset_readAll(void) MPI_Comm_rank(test_comm,&mpi_rank); /* set up the coords array selection */ - num_points = dim1; - coords = (hsize_t *)HDmalloc(dim0 * dim1 * MAX_RANK * sizeof(hsize_t)); + num_points = (size_t)dim1; + coords = (hsize_t *)HDmalloc((size_t)dim0 * (size_t)dim1 * MAX_RANK * sizeof(hsize_t)); VRFY((coords != NULL), "coords malloc succeeded"); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); - data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded"); /* ------------------- @@ -1723,18 +1724,18 @@ dataset_readAll(void) if(data_array1) free(data_array1); if(data_origin1) free(data_origin1); - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 malloc succeeded"); - data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded"); block[0] = 1; - block[1] = dim1; + block[1] = (hsize_t)dim1; stride[0] = 1; - stride[1] = dim1; + stride[1] = (hsize_t)dim1; count[0] = 1; count[1] = 1; - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank; start[1] = 0; dataset_fill(start, block, data_origin1); @@ -1784,12 +1785,12 @@ dataset_readAll(void) H5Pclose(xfer_plist); if(data_array1) free(data_array1); - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 malloc succeeded"); /* Dataset6: point selection in File - Point selection in Memory*/ /* create a file dataspace independently */ - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank; start[1] = 0; point_set (start, count, stride, block, num_points, coords, IN_ORDER); file_dataspace = H5Dget_space (dataset6); @@ -1829,7 +1830,7 @@ dataset_readAll(void) H5Pclose(xfer_plist); if(data_array1) free(data_array1); - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 malloc succeeded"); /* Dataset7: point selection in memory - All selection in file*/ @@ -1839,12 +1840,12 @@ dataset_readAll(void) ret = H5Sselect_all(file_dataspace); VRFY((ret >= 0), "H5Sselect_all succeeded"); - num_points = dim0 * dim1; + num_points = (size_t)dim0 * (size_t)dim1; k=0; for (i=0 ; i<dim0; i++) { for (j=0 ; j<dim1; j++) { - coords[k++] = i; - coords[k++] = j; + coords[k++] = (hsize_t)i; + coords[k++] = (hsize_t)j; } } mem_dataspace = H5Dget_space (dataset7); @@ -1867,7 +1868,7 @@ dataset_readAll(void) xfer_plist, data_array1); VRFY((ret >= 0), "H5Dread dataset7 succeeded"); - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)dim0/(hsize_t)mpi_size * (hsize_t)mpi_rank; start[1] = 0; ret = dataset_vrfy(start, count, stride, block, data_array1+(dim0/mpi_size * dim1 * mpi_rank), data_origin1); if(ret) nerrors++; @@ -1950,11 +1951,11 @@ extend_writeInd(void) MPI_Comm_rank(test_comm,&mpi_rank); /* setup chunk-size. Make sure sizes are > 0 */ - chunk_dims[0] = chunkdim0; - chunk_dims[1] = chunkdim1; + chunk_dims[0] = (hsize_t)chunkdim0; + chunk_dims[1] = (hsize_t)chunkdim1; /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); /* ------------------- @@ -2041,8 +2042,8 @@ extend_writeInd(void) VRFY((mem_dataspace >= 0), ""); /* Extend its current dim sizes before writing */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; ret = H5Dset_extent(dataset1, dims); VRFY((ret >= 0), "H5Dset_extent succeeded"); @@ -2101,8 +2102,8 @@ extend_writeInd(void) H5Sclose(file_dataspace); /* Extend dataset2 and try again. Should succeed. */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; ret = H5Dset_extent(dataset2, dims); VRFY((ret >= 0), "H5Dset_extent succeeded"); @@ -2263,7 +2264,7 @@ extend_writeInd2(void) * Write to the second half of the dataset * -------------------------*/ for (i=0; i<(int)orig_size; i++) - written[i] = orig_size + i; + H5_CHECKED_ASSIGN(written[i], int, orig_size + (hsize_t)i, hsize_t); MESG("data array re-initialized"); if(VERBOSE_MED) { MESG("writing at offset 10: "); @@ -2338,11 +2339,11 @@ extend_readInd(void) MPI_Comm_rank(test_comm,&mpi_rank); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); - data_array2 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array2 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array2 != NULL), "data_array2 HDmalloc succeeded"); - data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded"); /* ------------------- @@ -2521,11 +2522,11 @@ extend_writeAll(void) MPI_Comm_rank(test_comm,&mpi_rank); /* setup chunk-size. Make sure sizes are > 0 */ - chunk_dims[0] = chunkdim0; - chunk_dims[1] = chunkdim1; + chunk_dims[0] = (hsize_t)chunkdim0; + chunk_dims[1] = (hsize_t)chunkdim1; /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); /* ------------------- @@ -2612,8 +2613,8 @@ extend_writeAll(void) VRFY((mem_dataspace >= 0), ""); /* Extend its current dim sizes before writing */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; ret = H5Dset_extent(dataset1, dims); VRFY((ret >= 0), "H5Dset_extent succeeded"); @@ -2695,8 +2696,8 @@ extend_writeAll(void) H5Sclose(file_dataspace); /* Extend dataset2 and try again. Should succeed. */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; ret = H5Dset_extent(dataset2, dims); VRFY((ret >= 0), "H5Dset_extent succeeded"); @@ -2768,11 +2769,11 @@ extend_readAll(void) MPI_Comm_rank(test_comm,&mpi_rank); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); - data_array2 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array2 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array2 != NULL), "data_array2 HDmalloc succeeded"); - data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded"); /* ------------------- @@ -2940,7 +2941,7 @@ compress_readAll(void) hid_t dataspace; /* Dataspace ID */ hid_t dataset; /* Dataset ID */ int rank=1; /* Dataspace rank */ - hsize_t dim=dim0; /* Dataspace dimensions */ + hsize_t dim=(hsize_t)dim0; /* Dataspace dimensions */ unsigned u; /* Local index variable */ unsigned chunk_opts; /* Chunk options */ unsigned disable_partial_chunk_filters; /* Whether filters are disabled on partial chunks */ @@ -2968,7 +2969,7 @@ compress_readAll(void) /* Initialize data buffers */ for(u=0; u<dim;u++) - data_orig[u]=u; + data_orig[u]=(DATATYPE)u; /* Run test both with and without filters disabled on partial chunks */ for(disable_partial_chunk_filters = 0; disable_partial_chunk_filters <= 1; @@ -3152,8 +3153,8 @@ none_selection_chunk(void) MPI_Comm_rank(test_comm,&mpi_rank); /* setup chunk-size. Make sure sizes are > 0 */ - chunk_dims[0] = chunkdim0; - chunk_dims[1] = chunkdim1; + chunk_dims[0] = (hsize_t)chunkdim0; + chunk_dims[1] = (hsize_t)chunkdim1; /* ------------------- * START AN HDF5 FILE @@ -3183,8 +3184,8 @@ none_selection_chunk(void) VRFY((ret >= 0), "H5Pset_chunk succeeded"); /* setup dimensionality object */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple(MAX_RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -3461,8 +3462,8 @@ test_actual_io_mode(int selection_mode) { VRFY((fid >= 0), "H5Fcreate succeeded"); /* Create the basic Space */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple (MAX_RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -3473,7 +3474,7 @@ test_actual_io_mode(int selection_mode) { /* If we are not testing contiguous datasets */ if(is_chunked) { /* Set up chunk information. */ - chunk_dims[0] = dims[0]/mpi_size; + chunk_dims[0] = dims[0]/(hsize_t)mpi_size; chunk_dims[1] = dims[1]; ret = H5Pset_chunk(dcpl, 2, chunk_dims); VRFY((ret >= 0),"chunk creation property list succeeded"); @@ -3539,14 +3540,14 @@ test_actual_io_mode(int selection_mode) { slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL); } else { /* Select the first and the nth chunk in the nth column */ - block[0] = dim0 / mpi_size; - block[1] = dim1 / mpi_size; + block[0] = (hsize_t)(dim0 / mpi_size); + block[1] = (hsize_t)(dim1 / mpi_size); count[0] = 2; count[1] = 1; - stride[0] = mpi_rank * block[0]; + stride[0] = (hsize_t)mpi_rank * block[0]; stride[1] = 1; start[0] = 0; - start[1] = mpi_rank*block[1]; + start[1] = (hsize_t)mpi_rank*block[1]; } test_name = "Multi Chunk - Mixed"; @@ -3577,17 +3578,17 @@ test_actual_io_mode(int selection_mode) { if(mpi_rank == 0) { /* Select the first chunk in the first column */ slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL); - block[0] = block[0] / mpi_size; + block[0] = block[0] / (hsize_t)mpi_size; } else { /* Select the first and the nth chunk in the nth column */ - block[0] = dim0 / mpi_size; - block[1] = dim1 / mpi_size; + block[0] = (hsize_t)(dim0 / mpi_size); + block[1] = (hsize_t)(dim1 / mpi_size); count[0] = 2; count[1] = 1; - stride[0] = mpi_rank * block[0]; + stride[0] = (hsize_t)mpi_rank * block[0]; stride[1] = 1; start[0] = 0; - start[1] = mpi_rank*block[1]; + start[1] = (hsize_t)mpi_rank*block[1]; } /* If the testname was not already set by the RESET case */ @@ -3660,7 +3661,7 @@ test_actual_io_mode(int selection_mode) { length = dim0 * dim1; /* Allocate and initialize the buffer */ - buffer = (int *)HDmalloc(sizeof(int) * length); + buffer = (int *)HDmalloc(sizeof(int) * (size_t)length); VRFY((buffer != NULL), "HDmalloc of buffer succeeded"); for(i = 0; i < length; i++) buffer[i] = i; @@ -3891,8 +3892,6 @@ actual_io_mode_tests(void) { * Programmer: Jonathan Kim * Date: Aug, 2012 */ -#define DSET_NOCOLCAUSE "nocolcause" -#define NELM 2 #define FILE_EXTERNAL "nocolcause_extern.data" static void test_no_collective_cause_mode(int selection_mode) @@ -3989,8 +3988,8 @@ test_no_collective_cause_mode(int selection_mode) dims[1] = BIG_Y_FACTOR * 6; } else { - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; } sid = H5Screate_simple (MAX_RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -4012,7 +4011,7 @@ test_no_collective_cause_mode(int selection_mode) /* If we are not testing contiguous datasets */ if(is_chunked) { /* Set up chunk information. */ - chunk_dims[0] = dims[0]/mpi_size; + chunk_dims[0] = dims[0]/(hsize_t)mpi_size; chunk_dims[1] = dims[1]; ret = H5Pset_chunk(dcpl, 2, chunk_dims); VRFY((ret >= 0),"chunk creation property list succeeded"); @@ -4093,10 +4092,10 @@ test_no_collective_cause_mode(int selection_mode) } /* Get the number of elements in the selection */ - length = dims[0] * dims[1]; + H5_CHECKED_ASSIGN(length, int, dims[0] * dims[1], hsize_t); /* Allocate and initialize the buffer */ - buffer = (int *)HDmalloc(sizeof(int) * length); + buffer = (int *)HDmalloc(sizeof(int) * (size_t)length); VRFY((buffer != NULL), "HDmalloc of buffer succeeded"); for(i = 0; i < length; i++) buffer[i] = i; @@ -4522,10 +4521,10 @@ dataset_atomicity(void) buf_size = dim0 * dim1; /* allocate memory for data buffer */ - write_buf = (int *)HDcalloc(buf_size, sizeof(int)); + write_buf = (int *)HDcalloc((size_t)buf_size, sizeof(int)); VRFY((write_buf != NULL), "write_buf HDcalloc succeeded"); /* allocate memory for data buffer */ - read_buf = (int *)HDcalloc(buf_size, sizeof(int)); + read_buf = (int *)HDcalloc((size_t)buf_size, sizeof(int)); VRFY((read_buf != NULL), "read_buf HDcalloc succeeded"); /* setup file access template */ @@ -4541,8 +4540,8 @@ dataset_atomicity(void) VRFY((ret >= 0), "H5Pclose succeeded"); /* setup dimensionality object */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple (MAX_RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -4680,10 +4679,10 @@ dataset_atomicity(void) VRFY((dataset2 >= 0), "H5Dopen2 succeeded"); /* allocate memory for data buffer */ - write_buf = (int *)HDcalloc(buf_size, sizeof(int)); + write_buf = (int *)HDcalloc((size_t)buf_size, sizeof(int)); VRFY((write_buf != NULL), "write_buf HDcalloc succeeded"); /* allocate memory for data buffer */ - read_buf = (int *)HDcalloc(buf_size, sizeof(int)); + read_buf = (int *)HDcalloc((size_t)buf_size, sizeof(int)); VRFY((read_buf != NULL), "read_buf HDcalloc succeeded"); for (i=0 ; i<buf_size ; i++) { @@ -4700,12 +4699,12 @@ dataset_atomicity(void) VRFY((atomicity == TRUE), "atomcity set failed"); - block[0] = dim0/mpi_size - 1; - block[1] = dim1/mpi_size - 1; + block[0] = (hsize_t)(dim0/mpi_size) - 1; + block[1] = (hsize_t)(dim1/mpi_size) - 1; stride[0] = block[0] + 1; stride[1] = block[1] + 1; - count[0] = mpi_size; - count[1] = mpi_size; + count[0] = (hsize_t)mpi_size; + count[1] = (hsize_t)mpi_size; start[0] = 0; start[1] = 0; @@ -4761,19 +4760,19 @@ dataset_atomicity(void) compare = 5; for (i=0 ; i<dim0 ; i++) { - if ((hsize_t)i >= mpi_rank*(block[0]+1)) { + if ((hsize_t)i >= (hsize_t)mpi_rank*(block[0]+1)) { break; } - if ((i+1)%(block[0]+1)==0) { + if (((hsize_t)i+1)%(block[0]+1)==0) { k += dim1; continue; } for (j=0 ; j<dim1 ; j++) { - if ((hsize_t)j >= mpi_rank*(block[1]+1)) { - k += dim1 - mpi_rank*(block[1]+1); + if ((hsize_t)j >= (hsize_t)mpi_rank*(block[1]+1)) { + H5_CHECKED_ASSIGN(k, int, (hsize_t)dim1 - (hsize_t)mpi_rank*(block[1]+1) + (hsize_t)k, hsize_t); break; } - if ((j+1)%(block[1]+1)==0) { + if (((hsize_t)j+1)%(block[1]+1)==0) { k++; continue; } diff --git a/testpar/t_bigio.c b/testpar/t_bigio.c index 12c1023..70c77c3 100644 --- a/testpar/t_bigio.c +++ b/testpar/t_bigio.c @@ -27,7 +27,6 @@ const char *FILENAME[3]={ "bigio_test.h5", #define DATASET2 "DSET2" #define DATASET3 "DSET3" #define DATASET4 "DSET4" -#define DATASET5 "DSET5" #define DXFER_COLLECTIVE_IO 0x1 /* Collective IO*/ #define DXFER_INDEPENDENT_IO 0x2 /* Independent IO collectively */ #define DXFER_BIGCOUNT (1 < 29) @@ -248,7 +247,7 @@ ccslab_set(int mpi_rank, stride[1] = 1; count[0] = space_dim1; count[1] = space_dim2; - start[0] = mpi_rank*count[0]; + start[0] = (hsize_t)mpi_rank*count[0]; start[1] = 0; break; @@ -257,11 +256,11 @@ ccslab_set(int mpi_rank, /* Each process takes several disjoint blocks. */ block[0] = 1; block[1] = 1; - stride[0] = 3; - stride[1] = 3; - count[0] = space_dim1/(stride[0]*block[0]); - count[1] = (space_dim2)/(stride[1]*block[1]); - start[0] = space_dim1*mpi_rank; + stride[0] = 3; + stride[1] = 3; + count[0] = space_dim1/(stride[0]*block[0]); + count[1] = (space_dim2)/(stride[1]*block[1]); + start[0] = space_dim1*(hsize_t)mpi_rank; start[1] = 0; break; @@ -275,7 +274,7 @@ ccslab_set(int mpi_rank, stride[1] = 1; count[0] = ((mpi_rank >= MAX(1,(mpi_size-2)))?0:space_dim1); count[1] = space_dim2; - start[0] = mpi_rank*count[0]; + start[0] = (hsize_t)mpi_rank*count[0]; start[1] = 0; break; @@ -286,14 +285,14 @@ ccslab_set(int mpi_rank, half of the domain. */ block[0] = 1; - count[0] = 2; - stride[0] = space_dim1*mpi_size/4+1; + count[0] = 2; + stride[0] = (hsize_t)(space_dim1*(hsize_t)mpi_size/4+1); block[1] = space_dim2; count[1] = 1; start[1] = 0; stride[1] = 1; - if((mpi_rank *3)<(mpi_size*2)) start[0] = mpi_rank; - else start[0] = 1 + space_dim1*mpi_size/2 + (mpi_rank-2*mpi_size/3); + if((mpi_rank *3)<(mpi_size*2)) start[0] = (hsize_t)mpi_rank; + else start[0] = 1 + space_dim1*(hsize_t)mpi_size/2 + (hsize_t)(mpi_rank-2*mpi_size/3); break; case BYROW_SELECTINCHUNK: @@ -301,7 +300,7 @@ ccslab_set(int mpi_rank, block[0] = 1; count[0] = 1; - start[0] = mpi_rank*space_dim1; + start[0] = (hsize_t)mpi_rank*space_dim1; stride[0]= 1; block[1] = space_dim2; count[1] = 1; @@ -312,7 +311,7 @@ ccslab_set(int mpi_rank, default: /* Unknown mode. Set it to cover the whole dataset. */ - block[0] = space_dim1*mpi_size; + block[0] = space_dim1*(hsize_t)mpi_size; block[1] = space_dim2; stride[0] = block[0]; stride[1] = block[1]; @@ -520,7 +519,7 @@ dataset_big_write(void) HDprintf("\nTesting Dataset1 write by ROW\n"); /* Create a large dataset */ dims[0] = bigcount; - dims[1] = mpi_size; + dims[1] = (hsize_t)mpi_size; sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -528,13 +527,13 @@ dataset_big_write(void) VRFY((dataset >= 0), "H5Dcreate2 succeeded"); H5Sclose(sid); - block[0] = dims[0]/mpi_size; + block[0] = dims[0]/(hsize_t)mpi_size; block[1] = dims[1]; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; - start[0] = mpi_rank*block[0]; + start[0] = (hsize_t)mpi_rank*block[0]; start[1] = 0; /* create a file dataspace independently */ @@ -583,7 +582,7 @@ dataset_big_write(void) HDprintf("\nTesting Dataset2 write by COL\n"); /* Create a large dataset */ dims[0] = bigcount; - dims[1] = mpi_size; + dims[1] = (hsize_t)mpi_size; sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -592,13 +591,13 @@ dataset_big_write(void) H5Sclose(sid); block[0] = dims[0]; - block[1] = dims[1]/mpi_size; + block[1] = dims[1]/(hsize_t)mpi_size; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; start[0] = 0; - start[1] = mpi_rank*block[1]; + start[1] = (hsize_t)mpi_rank*block[1]; /* create a file dataspace independently */ file_dataspace = H5Dget_space (dataset); @@ -709,7 +708,7 @@ dataset_big_write(void) HDprintf("\nTesting Dataset4 write point selection\n"); /* Create a large dataset */ dims[0] = bigcount; - dims[1] = mpi_size * 4; + dims[1] = (hsize_t)(mpi_size * 4); sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -724,7 +723,7 @@ dataset_big_write(void) count[0] = 1; count[1] = 1; start[0] = 0; - start[1] = dims[1]/mpi_size * mpi_rank; + start[1] = dims[1]/(hsize_t)mpi_size * (hsize_t)mpi_rank; num_points = bigcount; @@ -837,16 +836,16 @@ dataset_big_read(void) VRFY((dataset >= 0), "H5Dopen2 succeeded"); dims[0] = bigcount; - dims[1] = mpi_size; + dims[1] = (hsize_t)mpi_size; /* Each process takes a slabs of cols. */ block[0] = dims[0]; - block[1] = dims[1]/mpi_size; + block[1] = dims[1]/(hsize_t)mpi_size; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; start[0] = 0; - start[1] = mpi_rank*block[1]; + start[1] = (hsize_t)mpi_rank*block[1]; /* create a file dataspace independently */ file_dataspace = H5Dget_space (dataset); @@ -899,15 +898,15 @@ dataset_big_read(void) VRFY((dataset >= 0), "H5Dopen2 succeeded"); dims[0] = bigcount; - dims[1] = mpi_size; + dims[1] = (hsize_t)mpi_size; /* Each process takes a slabs of rows. */ - block[0] = dims[0]/mpi_size; + block[0] = dims[0]/(hsize_t)mpi_size; block[1] = dims[1]; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; - start[0] = mpi_rank*block[0]; + start[0] = (hsize_t)mpi_rank*block[0]; start[1] = 0; /* create a file dataspace independently */ @@ -1023,7 +1022,7 @@ dataset_big_read(void) VRFY((dataset >= 0), "H5Dopen2 succeeded"); dims[0] = bigcount; - dims[1] = mpi_size * 4; + dims[1] = (hsize_t)(mpi_size * 4); block[0] = dims[0]/2; block[1] = 2; @@ -1032,7 +1031,7 @@ dataset_big_read(void) count[0] = 1; count[1] = 1; start[0] = 0; - start[1] = dims[1]/mpi_size * mpi_rank; + start[1] = dims[1]/(hsize_t)mpi_size * (hsize_t)mpi_rank; fill_datasets(start, block, wdata); MESG("data_array initialized"); @@ -1462,7 +1461,7 @@ coll_chunktest(const char* filename, VRFY((status >= 0),""); /* setup dimensionality object */ - dims[0] = space_dim1*mpi_size; + dims[0] = space_dim1*(hsize_t)mpi_size; dims[1] = space_dim2; /* allocate memory for data buffer */ @@ -1500,7 +1499,7 @@ coll_chunktest(const char* filename, VRFY((crp_plist >= 0),""); /* Set up chunk information. */ - chunk_dims[0] = dims[0]/chunk_factor; + chunk_dims[0] = dims[0]/(hsize_t)chunk_factor; /* to decrease the testing time, maintain bigger chunk size */ (chunk_factor == 1) ? (chunk_dims[1] = space_dim2) : (chunk_dims[1] = space_dim2/2); diff --git a/testpar/t_cache.c b/testpar/t_cache.c index cde19fe..954071d 100644 --- a/testpar/t_cache.c +++ b/testpar/t_cache.c @@ -28,7 +28,7 @@ #include "H5Fpkg.h" #include "H5Iprivate.h" #include "H5MFprivate.h" - +#include "H5private.h" #define BASE_ADDR (haddr_t)1024 @@ -38,7 +38,6 @@ int failures = 0; hbool_t verbose = TRUE; /* used to control error messages */ #define NFILENAME 2 -#define PARATESTFILE filenames[0] const char *FILENAME[NFILENAME]={"CacheTestDummy", NULL}; #ifndef PATH_MAX #define PATH_MAX 512 @@ -219,7 +218,9 @@ struct datum data[NUM_DATA_ENTRIES]; #define STD_VIRT_NUM_DATA_ENTRIES NUM_DATA_ENTRIES #define EXPRESS_VIRT_NUM_DATA_ENTRIES (NUM_DATA_ENTRIES / 10) /* Use a smaller test size to avoid creating huge MPE logfiles. */ +#ifdef H5_HAVE_MPE #define MPE_VIRT_NUM_DATA_ENTIES (NUM_DATA_ENTRIES / 100) +#endif int virt_num_data_entries = NUM_DATA_ENTRIES; @@ -1618,9 +1619,9 @@ serve_read_request(struct mssg_t * mssg_ptr) reply.dest = mssg_ptr->src; reply.mssg_num = -1; /* set by send function */ reply.base_addr = data[target_index].base_addr; - reply.len = data[target_index].len; + H5_CHECKED_ASSIGN(reply.len, unsigned, data[target_index].len, size_t); reply.ver = data[target_index].ver; - reply.count = 0; + reply.count = 0; reply.magic = MSSG_MAGIC; /* and update the counters */ @@ -1761,7 +1762,7 @@ serve_write_request(struct mssg_t * mssg_ptr) hbool_t report_mssg = FALSE; hbool_t success = TRUE; int target_index; - int new_ver_num; + int new_ver_num = 0; haddr_t target_addr; #if DO_WRITE_REQ_ACK struct mssg_t reply; @@ -1840,7 +1841,7 @@ serve_write_request(struct mssg_t * mssg_ptr) reply.dest = mssg_ptr->src; reply.mssg_num = -1; /* set by send function */ reply.base_addr = data[target_index].base_addr; - reply.len = data[target_index].len; + H5_CHECKED_ASSIGN(reply.len, unsigned, data[target_index].len, size_t); reply.ver = data[target_index].ver; reply.count = 0; reply.magic = MSSG_MAGIC; @@ -1926,7 +1927,7 @@ serve_total_writes_request(struct mssg_t * mssg_ptr) reply.base_addr = 0; reply.len = 0; reply.ver = 0; - reply.count = total_writes; + reply.count = (unsigned)total_writes; reply.magic = MSSG_MAGIC; } @@ -2005,7 +2006,7 @@ serve_total_reads_request(struct mssg_t * mssg_ptr) reply.base_addr = 0; reply.len = 0; reply.ver = 0; - reply.count = total_reads; + reply.count = (unsigned)total_reads; reply.magic = MSSG_MAGIC; } @@ -2099,7 +2100,7 @@ serve_entry_writes_request(struct mssg_t * mssg_ptr) reply.base_addr = target_addr; reply.len = 0; reply.ver = 0; - reply.count = data[target_index].writes; + reply.count = (unsigned)data[target_index].writes; reply.magic = MSSG_MAGIC; } } @@ -2196,7 +2197,7 @@ serve_entry_reads_request(struct mssg_t * mssg_ptr) reply.base_addr = target_addr; reply.len = 0; reply.ver = 0; - reply.count = (long)(data[target_index].reads); + reply.count = (unsigned)(data[target_index].reads); reply.magic = MSSG_MAGIC; } } @@ -2378,7 +2379,7 @@ datum_get_initial_load_size(void *udata_ptr, size_t *image_len_ptr) *------------------------------------------------------------------------- */ static void * -datum_deserialize(const void * image_ptr, +datum_deserialize(const void H5_ATTR_NDEBUG_UNUSED *image_ptr, H5_ATTR_UNUSED size_t len, void * udata_ptr, hbool_t * dirty_ptr) @@ -2491,14 +2492,13 @@ datum_image_len(const void *thing, size_t *image_len) */ static herr_t datum_serialize(const H5F_t *f, - void *image_ptr, + void H5_ATTR_NDEBUG_UNUSED *image_ptr, size_t len, void *thing_ptr) { herr_t ret_value = SUCCEED; int idx; struct datum * entry_ptr; - H5C_t * cache_ptr; struct H5AC_aux_t * aux_ptr; HDassert( thing_ptr ); @@ -2509,11 +2509,8 @@ datum_serialize(const H5F_t *f, HDassert( f ); HDassert( f->shared ); HDassert( f->shared->cache ); - - cache_ptr = f->shared->cache; - - HDassert( cache_ptr->magic == H5C__H5C_T_MAGIC ); - HDassert( cache_ptr->aux_ptr ); + HDassert( f->shared->cache->magic == H5C__H5C_T_MAGIC ); + HDassert( f->shared->cache->aux_ptr ); aux_ptr = (H5AC_aux_t *)(f->shared->cache->aux_ptr); @@ -2636,7 +2633,7 @@ datum_notify(H5C_notify_action_t action, void *thing) mssg.dest = world_server_mpi_rank; mssg.mssg_num = -1; /* set by send function */ mssg.base_addr = entry_ptr->base_addr; - mssg.len = entry_ptr->len; + H5_CHECKED_ASSIGN(mssg.len, unsigned, entry_ptr->len, size_t); mssg.ver = 0; /* bogus -- should be corrected by server */ mssg.count = 0; /* not used */ mssg.magic = MSSG_MAGIC; @@ -2792,7 +2789,7 @@ datum_notify(H5C_notify_action_t action, void *thing) mssg.dest = world_server_mpi_rank; mssg.mssg_num = -1; /* set by send function */ mssg.base_addr = entry_ptr->base_addr; - mssg.len = entry_ptr->len; + H5_CHECKED_ASSIGN(mssg.len, unsigned, entry_ptr->len, size_t); mssg.ver = entry_ptr->ver; mssg.count = 0; mssg.magic = MSSG_MAGIC; @@ -4612,7 +4609,7 @@ verify_entry_reads(haddr_t addr, int expected_entry_reads) { hbool_t success = TRUE; - int reported_entry_reads; + int reported_entry_reads = 0; struct mssg_t mssg; if ( success ) { @@ -4670,11 +4667,11 @@ verify_entry_reads(haddr_t addr, } } else { - reported_entry_reads = mssg.count; + H5_CHECKED_ASSIGN(reported_entry_reads, int, mssg.count, unsigned); } } - if ( ! success ) { + if ( success ) { if ( reported_entry_reads != expected_entry_reads ) { @@ -4719,7 +4716,7 @@ verify_entry_writes(haddr_t addr, int expected_entry_writes) { hbool_t success = TRUE; - int reported_entry_writes; + int reported_entry_writes = 0; struct mssg_t mssg; if ( success ) { @@ -4777,11 +4774,11 @@ verify_entry_writes(haddr_t addr, } } else { - reported_entry_writes = mssg.count; + H5_CHECKED_ASSIGN(reported_entry_writes, int, mssg.count, unsigned); } } - if ( ! success ) { + if ( success ) { if ( reported_entry_writes != expected_entry_writes ) { @@ -5233,7 +5230,7 @@ server_smoke_check(void) mssg.dest = world_server_mpi_rank; mssg.mssg_num = -1; /* set by send function */ mssg.base_addr = data[world_mpi_rank].base_addr; - mssg.len = data[world_mpi_rank].len; + H5_CHECKED_ASSIGN(mssg.len, unsigned, data[world_mpi_rank].len, size_t); mssg.ver = ++(data[world_mpi_rank].ver); mssg.count = 0; mssg.magic = MSSG_MAGIC; @@ -5338,7 +5335,7 @@ server_smoke_check(void) mssg.dest = world_server_mpi_rank; mssg.mssg_num = -1; /* set by send function */ mssg.base_addr = data[world_mpi_rank].base_addr; - mssg.len = data[world_mpi_rank].len; + H5_CHECKED_ASSIGN(mssg.len, unsigned, data[world_mpi_rank].len, size_t); mssg.ver = 0; /* bogus -- should be corrected by server */ mssg.count = 0; mssg.magic = MSSG_MAGIC; @@ -7268,7 +7265,8 @@ smoke_check_6(int metadata_write_strategy) } /* Make sure coll entries do not cross the 80% threshold */ - HDassert(cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); + H5_CHECK_OVERFLOW(cache_ptr->max_cache_size, size_t, double); + HDassert((double)cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); } /* insert the other half independently */ @@ -7289,7 +7287,7 @@ smoke_check_6(int metadata_write_strategy) } /* Make sure coll entries do not cross the 80% threshold */ - HDassert(cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); + HDassert((double)cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); } /* flush the file */ @@ -7319,7 +7317,7 @@ smoke_check_6(int metadata_write_strategy) } /* Make sure coll entries do not cross the 80% threshold */ - HDassert(cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); + HDassert((double)cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); } /* protect the other half independently */ @@ -7340,7 +7338,7 @@ smoke_check_6(int metadata_write_strategy) } /* Make sure coll entries do not cross the 80% threshold */ - HDassert(cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); + HDassert((double)cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); } for ( i = 0; i < (virt_num_data_entries); i++ ) diff --git a/testpar/t_chunk_alloc.c b/testpar/t_chunk_alloc.c index bfa0bfe..e6df2d8 100644 --- a/testpar/t_chunk_alloc.c +++ b/testpar/t_chunk_alloc.c @@ -95,7 +95,7 @@ create_chunked_dataset(const char *filename, int chunk_factor, write_type write_ /* Only MAINPROCESS should create the file. Others just wait. */ if (MAINPROCESS){ nchunks=chunk_factor*mpi_size; - dims[0]=nchunks*CHUNK_SIZE; + dims[0]=(hsize_t)(nchunks*CHUNK_SIZE); /* Create the data space with unlimited dimensions. */ dataspace = H5Screate_simple (1, dims, maxdims); VRFY((dataspace >= 0), ""); @@ -127,7 +127,7 @@ create_chunked_dataset(const char *filename, int chunk_factor, write_type write_ count[0] = 1; stride[0] = 1; block[0] = chunk_dims[0]; - offset[0] = (nchunks-2)*chunk_dims[0]; + offset[0] = (hsize_t)(nchunks-2)*chunk_dims[0]; hrc = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, stride, count, block); VRFY((hrc >= 0), ""); @@ -157,7 +157,7 @@ create_chunked_dataset(const char *filename, int chunk_factor, write_type write_ /* verify file size */ filesize = get_filesize(filename); - est_filesize = nchunks * CHUNK_SIZE * sizeof(unsigned char); + est_filesize = (MPI_Offset)nchunks * (MPI_Offset)CHUNK_SIZE * (MPI_Offset)sizeof(unsigned char); VRFY((filesize >= est_filesize), "file size check"); } @@ -233,7 +233,7 @@ parallel_access_dataset(const char *filename, int chunk_factor, access_type acti dataspace = H5Dget_space(*dataset); VRFY((dataspace >= 0), ""); - size[0] = nchunks*CHUNK_SIZE; + size[0] = (hsize_t)nchunks*CHUNK_SIZE; switch (action) { @@ -245,7 +245,7 @@ parallel_access_dataset(const char *filename, int chunk_factor, access_type acti stride[0] = 1; block[0] = chunk_dims[0]; for (i=0; i<nchunks/mpi_size; i++) { - offset[0] = (i*mpi_size+mpi_rank)*chunk_dims[0]; + offset[0] = (hsize_t)(i*mpi_size+mpi_rank)*chunk_dims[0]; hrc = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, stride, count, block); VRFY((hrc >= 0), ""); @@ -294,7 +294,7 @@ parallel_access_dataset(const char *filename, int chunk_factor, access_type acti /* verify file size */ filesize = get_filesize(filename); - est_filesize = nchunks*CHUNK_SIZE*sizeof(unsigned char); + est_filesize = (MPI_Offset)nchunks*(MPI_Offset)CHUNK_SIZE*(MPI_Offset)sizeof(unsigned char); VRFY((filesize >= est_filesize), "file size check"); /* Can close some plists */ @@ -374,7 +374,7 @@ verify_data(const char *filename, int chunk_factor, write_type write_pattern, in /* reset buffer values */ HDmemset(buffer, -1, CHUNK_SIZE); - offset[0] = i*chunk_dims[0]; + offset[0] = (hsize_t)i*chunk_dims[0]; hrc = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, stride, count, block); VRFY((hrc >= 0), ""); diff --git a/testpar/t_coll_chunk.c b/testpar/t_coll_chunk.c index 40cc1ca..e950015 100644 --- a/testpar/t_coll_chunk.c +++ b/testpar/t_coll_chunk.c @@ -620,7 +620,6 @@ coll_chunktest(const char* filename, size_t num_points; /* for point selection */ hsize_t *coords = NULL; /* for point selection */ hsize_t current_dims; /* for point selection */ - int i; /* set up MPI parameters */ MPI_Comm_size(comm,&mpi_size); @@ -638,7 +637,7 @@ coll_chunktest(const char* filename, VRFY((status >= 0),""); /* setup dimensionality object */ - dims[0] = SPACE_DIM1*mpi_size; + dims[0] = (hsize_t)(SPACE_DIM1*mpi_size); dims[1] = SPACE_DIM2; /* allocate memory for data buffer */ @@ -671,7 +670,7 @@ coll_chunktest(const char* filename, VRFY((crp_plist >= 0),""); /* Set up chunk information. */ - chunk_dims[0] = dims[0]/chunk_factor; + chunk_dims[0] = dims[0]/(hsize_t)chunk_factor; /* to decrease the testing time, maintain bigger chunk size */ (chunk_factor == 1) ? (chunk_dims[1] = SPACE_DIM2) : (chunk_dims[1] = SPACE_DIM2/2); @@ -1058,7 +1057,7 @@ ccslab_set(int mpi_rank, stride[1] = 1; count[0] = SPACE_DIM1; count[1] = SPACE_DIM2; - start[0] = mpi_rank*count[0]; + start[0] = (hsize_t)mpi_rank*count[0]; start[1] = 0; break; @@ -1067,11 +1066,11 @@ ccslab_set(int mpi_rank, /* Each process takes several disjoint blocks. */ block[0] = 1; block[1] = 1; - stride[0] = 3; - stride[1] = 3; - count[0] = SPACE_DIM1/(stride[0]*block[0]); - count[1] = (SPACE_DIM2)/(stride[1]*block[1]); - start[0] = SPACE_DIM1*mpi_rank; + stride[0] = 3; + stride[1] = 3; + count[0] = SPACE_DIM1/(stride[0]*block[0]); + count[1] = (SPACE_DIM2)/(stride[1]*block[1]); + start[0] = (hsize_t)SPACE_DIM1*(hsize_t)mpi_rank; start[1] = 0; break; @@ -1085,7 +1084,7 @@ ccslab_set(int mpi_rank, stride[1] = 1; count[0] = ((mpi_rank >= MAX(1,(mpi_size-2)))?0:SPACE_DIM1); count[1] = SPACE_DIM2; - start[0] = mpi_rank*count[0]; + start[0] = (hsize_t)mpi_rank*count[0]; start[1] = 0; break; @@ -1096,14 +1095,14 @@ ccslab_set(int mpi_rank, half of the domain. */ block[0] = 1; - count[0] = 2; - stride[0] = SPACE_DIM1*mpi_size/4+1; + count[0] = 2; + stride[0] = (hsize_t)SPACE_DIM1*(hsize_t)mpi_size/4+1; block[1] = SPACE_DIM2; count[1] = 1; start[1] = 0; stride[1] = 1; - if((mpi_rank *3)<(mpi_size*2)) start[0] = mpi_rank; - else start[0] = 1 + SPACE_DIM1*mpi_size/2 + (mpi_rank-2*mpi_size/3); + if((mpi_rank *3)<(mpi_size*2)) start[0] = (hsize_t)mpi_rank; + else start[0] = (hsize_t)(1 + SPACE_DIM1*mpi_size/2 + (mpi_rank-2*mpi_size/3)); break; case BYROW_SELECTINCHUNK: @@ -1111,7 +1110,7 @@ ccslab_set(int mpi_rank, block[0] = 1; count[0] = 1; - start[0] = mpi_rank*SPACE_DIM1; + start[0] = (hsize_t)(mpi_rank*SPACE_DIM1); stride[0]= 1; block[1] = SPACE_DIM2; count[1] = 1; @@ -1122,7 +1121,7 @@ ccslab_set(int mpi_rank, default: /* Unknown mode. Set it to cover the whole dataset. */ - block[0] = SPACE_DIM1*mpi_size; + block[0] = (hsize_t)SPACE_DIM1*(hsize_t)mpi_size; block[1] = SPACE_DIM2; stride[0] = block[0]; stride[1] = block[1]; diff --git a/testpar/t_coll_md_read.c b/testpar/t_coll_md_read.c index 912388c..d4b2106 100644 --- a/testpar/t_coll_md_read.c +++ b/testpar/t_coll_md_read.c @@ -34,7 +34,6 @@ #define MULTI_CHUNK_IO_ADDRMAP_ISSUE_DIMS 2 -#define LINK_CHUNK_IO_SORT_CHUNK_ISSUE_NO_SEL_PROCESS (mpi_rank == mpi_size - 1) #define LINK_CHUNK_IO_SORT_CHUNK_ISSUE_DATASET_NAME "linked_chunk_io_sort_chunk_issue" #define LINK_CHUNK_IO_SORT_CHUNK_ISSUE_Y_DIM_SCALE 20000 #define LINK_CHUNK_IO_SORT_CHUNK_ISSUE_CHUNK_SIZE 1 @@ -97,8 +96,8 @@ void test_partial_no_selection_coll_md_read(void) dataset_dims = HDmalloc(PARTIAL_NO_SELECTION_DATASET_NDIMS * sizeof(*dataset_dims)); VRFY((dataset_dims != NULL), "malloc succeeded"); - dataset_dims[0] = PARTIAL_NO_SELECTION_Y_DIM_SCALE * mpi_size; - dataset_dims[1] = PARTIAL_NO_SELECTION_X_DIM_SCALE * mpi_size; + dataset_dims[0] = (hsize_t)PARTIAL_NO_SELECTION_Y_DIM_SCALE * (hsize_t)mpi_size; + dataset_dims[1] = (hsize_t)PARTIAL_NO_SELECTION_X_DIM_SCALE * (hsize_t)mpi_size; max_dataset_dims[0] = H5S_UNLIMITED; max_dataset_dims[1] = H5S_UNLIMITED; @@ -121,12 +120,12 @@ void test_partial_no_selection_coll_md_read(void) * * The ranks will write rows across the dataset. */ - start[0] = PARTIAL_NO_SELECTION_Y_DIM_SCALE * mpi_rank; + start[0] = (hsize_t)PARTIAL_NO_SELECTION_Y_DIM_SCALE * (hsize_t)mpi_rank; start[1] = 0; stride[0] = PARTIAL_NO_SELECTION_Y_DIM_SCALE; stride[1] = PARTIAL_NO_SELECTION_X_DIM_SCALE; count[0] = 1; - count[1] = mpi_size; + count[1] = (hsize_t)mpi_size; block[0] = PARTIAL_NO_SELECTION_Y_DIM_SCALE; block[1] = PARTIAL_NO_SELECTION_X_DIM_SCALE; @@ -406,7 +405,7 @@ void test_link_chunk_io_sort_chunk_issue(void) dataset_dims = HDmalloc(LINK_CHUNK_IO_SORT_CHUNK_ISSUE_DIMS * sizeof(*dataset_dims)); VRFY((dataset_dims != NULL), "malloc succeeded"); - dataset_dims[0] = LINK_CHUNK_IO_SORT_CHUNK_ISSUE_CHUNK_SIZE * mpi_size * LINK_CHUNK_IO_SORT_CHUNK_ISSUE_Y_DIM_SCALE; + dataset_dims[0] = (hsize_t)LINK_CHUNK_IO_SORT_CHUNK_ISSUE_CHUNK_SIZE * (hsize_t)mpi_size * (hsize_t)LINK_CHUNK_IO_SORT_CHUNK_ISSUE_Y_DIM_SCALE; max_dataset_dims[0] = H5S_UNLIMITED; fspace_id = H5Screate_simple(LINK_CHUNK_IO_SORT_CHUNK_ISSUE_DIMS, dataset_dims, max_dataset_dims); @@ -429,8 +428,8 @@ void test_link_chunk_io_sort_chunk_issue(void) * The ranks will write rows across the dataset. */ stride[0] = LINK_CHUNK_IO_SORT_CHUNK_ISSUE_CHUNK_SIZE; - count[0] = (dataset_dims[0] / LINK_CHUNK_IO_SORT_CHUNK_ISSUE_CHUNK_SIZE) / mpi_size; - start[0] = count[0] * mpi_rank; + count[0] = (dataset_dims[0] / LINK_CHUNK_IO_SORT_CHUNK_ISSUE_CHUNK_SIZE) / (hsize_t)mpi_size; + start[0] = count[0] * (hsize_t)mpi_rank; block[0] = LINK_CHUNK_IO_SORT_CHUNK_ISSUE_CHUNK_SIZE; VRFY((H5Sselect_hyperslab(fspace_id, H5S_SELECT_SET, start, stride, count, block) >= 0), "H5Sselect_hyperslab succeeded"); diff --git a/testpar/t_dset.c b/testpar/t_dset.c index 832a47f..05baf3f 100644 --- a/testpar/t_dset.c +++ b/testpar/t_dset.c @@ -48,61 +48,61 @@ slab_set(int mpi_rank, int mpi_size, hsize_t start[], hsize_t count[], switch (mode) { case BYROW: /* Each process takes a slabs of rows. */ - block[0] = dim0 / mpi_size; - block[1] = dim1; + block[0] = (hsize_t)(dim0 / mpi_size); + block[1] = (hsize_t)dim1; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; - start[0] = mpi_rank * block[0]; + start[0] = (hsize_t)mpi_rank * block[0]; start[1] = 0; if (VERBOSE_MED) HDprintf("slab_set BYROW\n"); break; case BYCOL: /* Each process takes a block of columns. */ - block[0] = dim0; - block[1] = dim1 / mpi_size; + block[0] = (hsize_t)dim0; + block[1] = (hsize_t)(dim1 / mpi_size); stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; start[0] = 0; - start[1] = mpi_rank * block[1]; + start[1] = (hsize_t)mpi_rank * block[1]; if (VERBOSE_MED) HDprintf("slab_set BYCOL\n"); break; case ZROW: /* Similar to BYROW except process 0 gets 0 row */ - block[0] = (mpi_rank ? dim0 / mpi_size : 0); - block[1] = dim1; + block[0] = (hsize_t)(mpi_rank ? dim0 / mpi_size : 0); + block[1] = (hsize_t)dim1; stride[0] = (mpi_rank ? block[0] : 1); /* avoid setting stride to 0 */ stride[1] = block[1]; count[0] = 1; count[1] = 1; - start[0] = (mpi_rank ? mpi_rank * block[0] : 0); + start[0] = (hsize_t)(mpi_rank ? (hsize_t)mpi_rank * block[0] : 0); start[1] = 0; if (VERBOSE_MED) HDprintf("slab_set ZROW\n"); break; case ZCOL: /* Similar to BYCOL except process 0 gets 0 column */ - block[0] = dim0; - block[1] = (mpi_rank ? dim1 / mpi_size : 0); + block[0] = (hsize_t)dim0; + block[1] = (hsize_t)(mpi_rank ? dim1 / mpi_size : 0); stride[0] = block[0]; stride[1] = (mpi_rank ? block[1] : 1); /* avoid setting stride to 0 */ count[0] = 1; count[1] = 1; start[0] = 0; - start[1] = (mpi_rank ? mpi_rank * block[1] : 0); + start[1] = (hsize_t)(mpi_rank ? (hsize_t)mpi_rank * block[1] : 0); if (VERBOSE_MED) HDprintf("slab_set ZCOL\n"); break; default: /* Unknown mode. Set it to cover the whole dataset. */ HDprintf("unknown slab_set mode (%d)\n", mode); - block[0] = dim0; - block[1] = dim1; + block[0] = (hsize_t)dim0; + block[1] = (hsize_t)dim1; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; @@ -308,7 +308,7 @@ dataset_writeInd(void) MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); /* ---------------------------------------- @@ -332,8 +332,8 @@ dataset_writeInd(void) * and the slabs local to the MPI process. * ------------------------------------------- */ /* setup dimensionality object */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -453,9 +453,9 @@ dataset_readInd(void) MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); - data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded"); /* setup file access template */ @@ -567,7 +567,6 @@ dataset_writeAll(void) size_t num_points; /* for point selection */ hsize_t *coords = NULL; /* for point selection */ hsize_t current_dims; /* for point selection */ - int i; herr_t ret; /* Generic return value */ int mpi_size, mpi_rank; @@ -584,12 +583,12 @@ dataset_writeAll(void) MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); /* set up the coords array selection */ - num_points = dim1; - coords = (hsize_t *)HDmalloc(dim1 * RANK * sizeof(hsize_t)); + num_points = (size_t)dim1; + coords = (hsize_t *)HDmalloc((size_t)dim1 * (size_t)RANK * sizeof(hsize_t)); VRFY((coords != NULL), "coords malloc succeeded"); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); /* ------------------- @@ -613,8 +612,8 @@ dataset_writeAll(void) * and create the dataset * ------------------------- */ /* setup 2-D dimensionality object */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -915,16 +914,16 @@ dataset_writeAll(void) if(data_array1) free(data_array1); - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 malloc succeeded"); block[0] = 1; - block[1] = dim1; + block[1] = (hsize_t)dim1; stride[0] = 1; - stride[1] = dim1; + stride[1] = (hsize_t)dim1; count[0] = 1; count[1] = 1; - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)(dim0/mpi_size * mpi_rank); start[1] = 0; dataset_fill(start, block, data_array1); @@ -971,7 +970,7 @@ dataset_writeAll(void) /* Dataset6: point selection in File - Point selection in Memory*/ /* create a file dataspace independently */ - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)(dim0/mpi_size * mpi_rank); start[1] = 0; point_set (start, count, stride, block, num_points, coords, OUT_OF_ORDER); file_dataspace = H5Dget_space (dataset6); @@ -1009,7 +1008,7 @@ dataset_writeAll(void) /* Dataset7: point selection in File - All selection in Memory*/ /* create a file dataspace independently */ - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)(dim0/mpi_size * mpi_rank); start[1] = 0; point_set (start, count, stride, block, num_points, coords, IN_ORDER); file_dataspace = H5Dget_space (dataset7); @@ -1098,7 +1097,6 @@ dataset_readAll(void) size_t num_points; /* for point selection */ hsize_t *coords = NULL; /* for point selection */ - hsize_t current_dims; /* for point selection */ int i,j,k; herr_t ret; /* Generic return value */ @@ -1116,14 +1114,14 @@ dataset_readAll(void) MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); /* set up the coords array selection */ - num_points = dim1; - coords = (hsize_t *)HDmalloc(dim0 * dim1 * RANK * sizeof(hsize_t)); + num_points = (size_t)dim1; + coords = (hsize_t *)HDmalloc((size_t)dim0 * (size_t)dim1 * (size_t)RANK * sizeof(hsize_t)); VRFY((coords != NULL), "coords malloc succeeded"); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); - data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded"); /* ------------------- @@ -1301,18 +1299,18 @@ dataset_readAll(void) if(data_array1) free(data_array1); if(data_origin1) free(data_origin1); - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 malloc succeeded"); - data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded"); block[0] = 1; - block[1] = dim1; + block[1] = (hsize_t)dim1; stride[0] = 1; - stride[1] = dim1; + stride[1] = (hsize_t)dim1; count[0] = 1; count[1] = 1; - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)(dim0/mpi_size * mpi_rank); start[1] = 0; dataset_fill(start, block, data_origin1); @@ -1363,12 +1361,12 @@ dataset_readAll(void) if(data_array1) free(data_array1); - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 malloc succeeded"); /* Dataset6: point selection in File - Point selection in Memory*/ /* create a file dataspace independently */ - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)(dim0/mpi_size * mpi_rank); start[1] = 0; point_set (start, count, stride, block, num_points, coords, IN_ORDER); file_dataspace = H5Dget_space (dataset6); @@ -1408,7 +1406,7 @@ dataset_readAll(void) H5Pclose(xfer_plist); if(data_array1) free(data_array1); - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 malloc succeeded"); /* Dataset7: point selection in memory - All selection in file*/ @@ -1418,12 +1416,12 @@ dataset_readAll(void) ret = H5Sselect_all(file_dataspace); VRFY((ret >= 0), "H5Sselect_all succeeded"); - num_points = dim0 * dim1; + H5_CHECKED_ASSIGN(num_points, size_t, dim0 * dim1, int); k=0; for (i=0 ; i<dim0; i++) { for (j=0 ; j<dim1; j++) { - coords[k++] = i; - coords[k++] = j; + coords[k++] = (hsize_t)i; + coords[k++] = (hsize_t)j; } } mem_dataspace = H5Dget_space (dataset7); @@ -1446,7 +1444,7 @@ dataset_readAll(void) xfer_plist, data_array1); VRFY((ret >= 0), "H5Dread dataset7 succeeded"); - start[0] = dim0/mpi_size * mpi_rank; + start[0] = (hsize_t)(dim0/mpi_size * mpi_rank); start[1] = 0; ret = dataset_vrfy(start, count, stride, block, data_array1+(dim0/mpi_size * dim1 * mpi_rank), data_origin1); if(ret) nerrors++; @@ -1529,11 +1527,11 @@ extend_writeInd(void) MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); /* setup chunk-size. Make sure sizes are > 0 */ - chunk_dims[0] = chunkdim0; - chunk_dims[1] = chunkdim1; + chunk_dims[0] = (hsize_t)chunkdim0; + chunk_dims[1] = (hsize_t)chunkdim1; /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); /* ------------------- @@ -1620,8 +1618,8 @@ extend_writeInd(void) VRFY((mem_dataspace >= 0), ""); /* Extend its current dim sizes before writing */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; ret = H5Dset_extent(dataset1, dims); VRFY((ret >= 0), "H5Dset_extent succeeded"); @@ -1680,8 +1678,8 @@ extend_writeInd(void) H5Sclose(file_dataspace); /* Extend dataset2 and try again. Should succeed. */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; ret = H5Dset_extent(dataset2, dims); VRFY((ret >= 0), "H5Dset_extent succeeded"); @@ -1842,7 +1840,7 @@ extend_writeInd2(void) * Write to the second half of the dataset * -------------------------*/ for (i=0; i<(int)orig_size; i++) - written[i] = orig_size + i; + written[i] = (int)orig_size + i; MESG("data array re-initialized"); if(VERBOSE_MED) { MESG("writing at offset 10: "); @@ -1917,11 +1915,11 @@ extend_readInd(void) MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); - data_array2 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array2 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array2 != NULL), "data_array2 HDmalloc succeeded"); - data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded"); /* ------------------- @@ -2100,11 +2098,11 @@ extend_writeAll(void) MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); /* setup chunk-size. Make sure sizes are > 0 */ - chunk_dims[0] = chunkdim0; - chunk_dims[1] = chunkdim1; + chunk_dims[0] = (hsize_t)chunkdim0; + chunk_dims[1] = (hsize_t)chunkdim1; /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); /* ------------------- @@ -2191,8 +2189,8 @@ extend_writeAll(void) VRFY((mem_dataspace >= 0), ""); /* Extend its current dim sizes before writing */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; ret = H5Dset_extent(dataset1, dims); VRFY((ret >= 0), "H5Dset_extent succeeded"); @@ -2274,8 +2272,8 @@ extend_writeAll(void) H5Sclose(file_dataspace); /* Extend dataset2 and try again. Should succeed. */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; ret = H5Dset_extent(dataset2, dims); VRFY((ret >= 0), "H5Dset_extent succeeded"); @@ -2347,11 +2345,11 @@ extend_readAll(void) MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); /* allocate memory for data buffer */ - data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded"); - data_array2 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_array2 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_array2 != NULL), "data_array2 HDmalloc succeeded"); - data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE)); + data_origin1 = (DATATYPE *)HDmalloc((size_t)dim0*(size_t)dim1*sizeof(DATATYPE)); VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded"); /* ------------------- @@ -2519,7 +2517,7 @@ compress_readAll(void) hid_t dataspace; /* Dataspace ID */ hid_t dataset; /* Dataset ID */ int rank=1; /* Dataspace rank */ - hsize_t dim=dim0; /* Dataspace dimensions */ + hsize_t dim=(hsize_t)dim0; /* Dataspace dimensions */ unsigned u; /* Local index variable */ unsigned chunk_opts; /* Chunk options */ unsigned disable_partial_chunk_filters; /* Whether filters are disabled on partial chunks */ @@ -2547,7 +2545,7 @@ compress_readAll(void) /* Initialize data buffers */ for(u=0; u<dim;u++) - data_orig[u]=u; + data_orig[u]=(int)u; /* Run test both with and without filters disabled on partial chunks */ for(disable_partial_chunk_filters = 0; disable_partial_chunk_filters <= 1; @@ -2731,8 +2729,8 @@ none_selection_chunk(void) MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); /* setup chunk-size. Make sure sizes are > 0 */ - chunk_dims[0] = chunkdim0; - chunk_dims[1] = chunkdim1; + chunk_dims[0] = (hsize_t)chunkdim0; + chunk_dims[1] = (hsize_t)chunkdim1; /* ------------------- * START AN HDF5 FILE @@ -2762,8 +2760,8 @@ none_selection_chunk(void) VRFY((ret >= 0), "H5Pset_chunk succeeded"); /* setup dimensionality object */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple(RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -3040,8 +3038,8 @@ test_actual_io_mode(int selection_mode) { VRFY((fid >= 0), "H5Fcreate succeeded"); /* Create the basic Space */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -3052,7 +3050,7 @@ test_actual_io_mode(int selection_mode) { /* If we are not testing contiguous datasets */ if(is_chunked) { /* Set up chunk information. */ - chunk_dims[0] = dims[0]/mpi_size; + chunk_dims[0] = dims[0]/(hsize_t)mpi_size; chunk_dims[1] = dims[1]; ret = H5Pset_chunk(dcpl, 2, chunk_dims); VRFY((ret >= 0),"chunk creation property list succeeded"); @@ -3118,14 +3116,14 @@ test_actual_io_mode(int selection_mode) { slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL); } else { /* Select the first and the nth chunk in the nth column */ - block[0] = dim0 / mpi_size; - block[1] = dim1 / mpi_size; + block[0] = (hsize_t)(dim0 / mpi_size); + block[1] = (hsize_t)(dim1 / mpi_size); count[0] = 2; count[1] = 1; - stride[0] = mpi_rank * block[0]; + stride[0] = (hsize_t)mpi_rank * block[0]; stride[1] = 1; start[0] = 0; - start[1] = mpi_rank*block[1]; + start[1] = (hsize_t)mpi_rank*block[1]; } test_name = "Multi Chunk - Mixed"; @@ -3156,17 +3154,17 @@ test_actual_io_mode(int selection_mode) { if(mpi_rank == 0) { /* Select the first chunk in the first column */ slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL); - block[0] = block[0] / mpi_size; + block[0] = block[0] / (hsize_t)mpi_size; } else { /* Select the first and the nth chunk in the nth column */ - block[0] = dim0 / mpi_size; - block[1] = dim1 / mpi_size; + block[0] = (hsize_t)(dim0 / mpi_size); + block[1] = (hsize_t)(dim1 / mpi_size); count[0] = 2; count[1] = 1; - stride[0] = mpi_rank * block[0]; + stride[0] = (hsize_t)mpi_rank * block[0]; stride[1] = 1; start[0] = 0; - start[1] = mpi_rank*block[1]; + start[1] = (hsize_t)mpi_rank*block[1]; } /* If the testname was not already set by the RESET case */ @@ -3239,7 +3237,7 @@ test_actual_io_mode(int selection_mode) { length = dim0 * dim1; /* Allocate and initialize the buffer */ - buffer = (int *)HDmalloc(sizeof(int) * length); + buffer = (int *)HDmalloc(sizeof(int) * (size_t)length); VRFY((buffer != NULL), "HDmalloc of buffer succeeded"); for(i = 0; i < length; i++) buffer[i] = i; @@ -3470,8 +3468,9 @@ actual_io_mode_tests(void) { * Programmer: Jonathan Kim * Date: Aug, 2012 */ +#ifdef LATER #define DSET_NOCOLCAUSE "nocolcause" -#define NELM 2 +#endif #define FILE_EXTERNAL "nocolcause_extern.data" static void test_no_collective_cause_mode(int selection_mode) @@ -3482,7 +3481,6 @@ test_no_collective_cause_mode(int selection_mode) uint32_t no_collective_cause_global_write = 0; uint32_t no_collective_cause_global_read = 0; uint32_t no_collective_cause_global_expected = 0; - hsize_t coord[NELM][RANK]; const char * filename; const char * test_name; @@ -3568,8 +3566,8 @@ test_no_collective_cause_mode(int selection_mode) dims[1] = COL_FACTOR * 6; } else { - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; } sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -3591,7 +3589,7 @@ test_no_collective_cause_mode(int selection_mode) /* If we are not testing contiguous datasets */ if(is_chunked) { /* Set up chunk information. */ - chunk_dims[0] = dims[0]/mpi_size; + chunk_dims[0] = dims[0]/(hsize_t)mpi_size; chunk_dims[1] = dims[1]; ret = H5Pset_chunk(dcpl, 2, chunk_dims); VRFY((ret >= 0),"chunk creation property list succeeded"); @@ -3672,10 +3670,10 @@ test_no_collective_cause_mode(int selection_mode) } /* Get the number of elements in the selection */ - length = dims[0] * dims[1]; + H5_CHECKED_ASSIGN(length, int, dims[0] * dims[1], uint64_t); /* Allocate and initialize the buffer */ - buffer = (int *)HDmalloc(sizeof(int) * length); + buffer = (int *)HDmalloc(sizeof(int) * (size_t)length); VRFY((buffer != NULL), "HDmalloc of buffer succeeded"); for(i = 0; i < length; i++) buffer[i] = i; @@ -3797,6 +3795,7 @@ test_no_collective_cause_mode(int selection_mode) * Programmer: Jonathan Kim * Date: Aug, 2012 */ +#ifdef LATER static void test_no_collective_cause_mode_filter(int selection_mode) { @@ -3865,8 +3864,8 @@ test_no_collective_cause_mode_filter(int selection_mode) } /* Create the basic Space */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -3884,7 +3883,7 @@ test_no_collective_cause_mode_filter(int selection_mode) /* If we are not testing contiguous datasets */ if(is_chunked) { /* Set up chunk information. */ - chunk_dims[0] = dims[0]/mpi_size; + chunk_dims[0] = dims[0]/(hsize_t)mpi_size; chunk_dims[1] = dims[1]; ret = H5Pset_chunk(dcpl, 2, chunk_dims); VRFY((ret >= 0),"chunk creation property list succeeded"); @@ -3914,7 +3913,7 @@ test_no_collective_cause_mode_filter(int selection_mode) length = dim0 * dim1; /* Allocate and initialize the buffer */ - buffer = (int *)HDmalloc(sizeof(int) * length); + buffer = (int *)HDmalloc(sizeof(int) * (size_t)length); VRFY((buffer != NULL), "HDmalloc of buffer succeeded"); for(i = 0; i < length; i++) buffer[i] = i; @@ -4008,6 +4007,7 @@ test_no_collective_cause_mode_filter(int selection_mode) HDfree(buffer); return; } +#endif /* Function: no_collective_cause_tests * @@ -4099,10 +4099,10 @@ dataset_atomicity(void) buf_size = dim0 * dim1; /* allocate memory for data buffer */ - write_buf = (int *)HDcalloc(buf_size, sizeof(int)); + write_buf = (int *)HDcalloc((size_t)buf_size, sizeof(int)); VRFY((write_buf != NULL), "write_buf HDcalloc succeeded"); /* allocate memory for data buffer */ - read_buf = (int *)HDcalloc(buf_size, sizeof(int)); + read_buf = (int *)HDcalloc((size_t)buf_size, sizeof(int)); VRFY((read_buf != NULL), "read_buf HDcalloc succeeded"); /* setup file access template */ @@ -4118,8 +4118,8 @@ dataset_atomicity(void) VRFY((ret >= 0), "H5Pclose succeeded"); /* setup dimensionality object */ - dims[0] = dim0; - dims[1] = dim1; + dims[0] = (hsize_t)dim0; + dims[1] = (hsize_t)dim1; sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -4257,10 +4257,10 @@ dataset_atomicity(void) VRFY((dataset2 >= 0), "H5Dopen2 succeeded"); /* allocate memory for data buffer */ - write_buf = (int *)HDcalloc(buf_size, sizeof(int)); + write_buf = (int *)HDcalloc((size_t)buf_size, sizeof(int)); VRFY((write_buf != NULL), "write_buf HDcalloc succeeded"); /* allocate memory for data buffer */ - read_buf = (int *)HDcalloc(buf_size, sizeof(int)); + read_buf = (int *)HDcalloc((size_t)buf_size, sizeof(int)); VRFY((read_buf != NULL), "read_buf HDcalloc succeeded"); for (i=0 ; i<buf_size ; i++) { @@ -4277,12 +4277,12 @@ dataset_atomicity(void) VRFY((atomicity == TRUE), "atomcity set failed"); - block[0] = dim0/mpi_size - 1; - block[1] = dim1/mpi_size - 1; + block[0] = (hsize_t)(dim0/mpi_size - 1); + block[1] = (hsize_t)(dim1/mpi_size - 1); stride[0] = block[0] + 1; stride[1] = block[1] + 1; - count[0] = mpi_size; - count[1] = mpi_size; + count[0] = (hsize_t)mpi_size; + count[1] = (hsize_t)mpi_size; start[0] = 0; start[1] = 0; @@ -4338,19 +4338,19 @@ dataset_atomicity(void) compare = 5; for (i=0 ; i<dim0 ; i++) { - if (i >= mpi_rank*(block[0]+1)) { + if ((hsize_t)i >= (hsize_t)mpi_rank*(block[0]+1)) { break; } - if ((i+1)%(block[0]+1)==0) { + if (((hsize_t)i+1)%(block[0]+1)==0) { k += dim1; continue; } for (j=0 ; j<dim1 ; j++) { - if (j >= mpi_rank*(block[1]+1)) { - k += dim1 - mpi_rank*(block[1]+1); + if ((hsize_t)j >= (hsize_t)mpi_rank*(block[1]+1)) { + H5_CHECKED_ASSIGN(k, int, (hsize_t)dim1 - (hsize_t)mpi_rank*(block[1]+1), hsize_t); break; } - if ((j+1)%(block[1]+1)==0) { + if (((hsize_t)j+1)%(block[1]+1)==0) { k++; continue; } diff --git a/testpar/t_file.c b/testpar/t_file.c index 99ac189..6183b8d 100644 --- a/testpar/t_file.c +++ b/testpar/t_file.c @@ -471,19 +471,19 @@ create_file(const char *filename, hid_t fcpl, hid_t fapl, int metadata_write_str grp_id = H5Gcreate2(file_id, "GROUP", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); VRFY((grp_id >= 0), ""); - dims[0] = ROW_FACTOR*mpi_size; - dims[1] = COL_FACTOR*mpi_size; + dims[0] = (hsize_t)(ROW_FACTOR*mpi_size); + dims[1] = (hsize_t)(COL_FACTOR*mpi_size); sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); /* Each process takes a slabs of rows. */ - block[0] = dims[0]/mpi_size; + block[0] = dims[0]/(hsize_t)mpi_size; block[1] = dims[1]; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; - start[0] = mpi_rank*block[0]; + start[0] = (hsize_t)mpi_rank*block[0]; start[1] = 0; num_elements = block[0] * block[1]; @@ -632,17 +632,17 @@ open_file(const char *filename, hid_t fapl, int metadata_write_strategy, grp_id = H5Gopen2(file_id, "GROUP", H5P_DEFAULT); VRFY((grp_id >= 0), ""); - dims[0] = ROW_FACTOR*mpi_size; - dims[1] = COL_FACTOR*mpi_size; + dims[0] = (hsize_t)(ROW_FACTOR*mpi_size); + dims[1] = (hsize_t)(COL_FACTOR*mpi_size); /* Each process takes a slabs of rows. */ - block[0] = dims[0]/mpi_size; + block[0] = dims[0]/(hsize_t)mpi_size; block[1] = dims[1]; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; - start[0] = mpi_rank*block[0]; + start[0] = (hsize_t)mpi_rank*block[0]; start[1] = 0; num_elements = block[0] * block[1]; diff --git a/testpar/t_filter_read.c b/testpar/t_filter_read.c index 28baed5..7b0e677 100644 --- a/testpar/t_filter_read.c +++ b/testpar/t_filter_read.c @@ -74,10 +74,10 @@ filter_read_internal(const char *filename, hid_t dcpl, hs_size[0] = size[0] = HS_DIM1; hs_size[1] = HS_DIM2; - size[1] = hs_size[1] * mpi_size; + size[1] = hs_size[1] * (hsize_t)mpi_size; hs_offset[0] = 0; - hs_offset[1] = hs_size[1] * mpi_rank; + hs_offset[1] = hs_size[1] * (hsize_t)mpi_rank; /* Create the data space */ sid = H5Screate_simple(2, size, NULL); @@ -215,7 +215,9 @@ test_filter_read(void) unsigned disable_partial_chunk_filters; /* Whether filters are disabled on partial chunks */ herr_t hrc; const char *filename; +#ifdef H5_HAVE_FILTER_FLETCHER32 hsize_t fletcher32_size; /* Size of dataset with Fletcher32 checksum */ +#endif #ifdef H5_HAVE_FILTER_DEFLATE hsize_t deflate_size; /* Size of dataset with deflate filter */ diff --git a/testpar/t_mdset.c b/testpar/t_mdset.c index 63ac8d3..6cdb0af7 100644 --- a/testpar/t_mdset.c +++ b/testpar/t_mdset.c @@ -13,6 +13,7 @@ #include "testphdf5.h" #include "H5Dprivate.h" +#include "H5private.h" #define DIM 2 #define SIZE 32 @@ -156,11 +157,12 @@ void multiple_dset_write(void) ndatasets = pt->count; size = get_size(); + H5_CHECK_OVERFLOW(size, int, size_t); MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); - outme = HDmalloc((size_t)(size * size * sizeof(double))); + outme = HDmalloc((size_t)size * (size_t)size * sizeof(double)); VRFY((outme != NULL), "HDmalloc succeeded for outme"); plist = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type); @@ -237,15 +239,15 @@ void compact_dataset(void) size = get_size(); for(i = 0; i < DIM; i++ ) - file_dims[i] = size; + file_dims[i] = (hsize_t)size; MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); - outme = HDmalloc((size_t)(size * size * sizeof(double))); + outme = HDmalloc((size_t)((size_t)size * (size_t)size * sizeof(double))); VRFY((outme != NULL), "HDmalloc succeeded for outme"); - inme = HDmalloc((size_t)(size * size * sizeof(double))); + inme = HDmalloc((size_t)size * (size_t)size * sizeof(double)); VRFY((outme != NULL), "HDmalloc succeeded for inme"); filename = GetTestParameters(); @@ -332,7 +334,7 @@ void compact_dataset(void) /* Verify data value */ for(i = 0; i < size; i++) for(j = 0; j < size; j++) - if(inme[(i * size) + j] != outme[(i * size) + j]) + if(!H5_DBL_ABS_EQUAL(inme[(i * size) + j], outme[(i * size) + j])) if(err_num++ < MAX_ERR_REPORT || VERBOSE_MED) HDprintf("Dataset Verify failed at [%d][%d]: expect %f, got %f\n", i, j, outme[(i * size) + j], inme[(i * size) + j]); @@ -362,7 +364,7 @@ void null_dataset(void) hid_t iof, plist, dxpl, dataset, attr, sid; unsigned uval=2; /* Buffer for writing to dataset */ int val=1; /* Buffer for writing to attribute */ - int nelem; + hssize_t nelem; char dname[]="dataset"; char attr_name[]="attribute"; herr_t ret; @@ -626,7 +628,7 @@ void dataset_fillvalue(void) /* Set the dataset dimension to be one row more than number of processes */ /* and calculate the actual dataset size. */ - dset_dims[0]=mpi_size+1; + dset_dims[0]=(hsize_t)(mpi_size+1); dset_size=dset_dims[0]*dset_dims[1]*dset_dims[2]*dset_dims[3]; /* Allocate space for the buffers */ @@ -719,7 +721,7 @@ void dataset_fillvalue(void) * Each process writes 1 row of data. Thus last row is not written. */ /* Create hyperslabs in memory and file dataspaces */ - req_start[0]=mpi_rank; + req_start[0]=(hsize_t)mpi_rank; ret = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, req_start, NULL, req_count, NULL); VRFY((ret >= 0), "H5Sselect_hyperslab succeeded on memory dataspace"); ret = H5Sselect_hyperslab(memspace, H5S_SELECT_SET, req_start, NULL, req_count, NULL); @@ -877,7 +879,7 @@ void collective_group_write(void) chunk_size[0] =(hsize_t)(size / 2); chunk_size[1] =(hsize_t)(size / 2); - outme = HDmalloc((size_t)(size * size * sizeof(DATATYPE))); + outme = HDmalloc((size_t)size * (size_t)size * sizeof(DATATYPE)); VRFY((outme != NULL), "HDmalloc succeeded for outme"); plist = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type); @@ -1001,10 +1003,10 @@ group_dataset_read(hid_t fid, int mpi_rank, int m) size = get_size(); - indata =(DATATYPE*)HDmalloc((size_t)(size * size * sizeof(DATATYPE))); + indata =(DATATYPE*)HDmalloc((size_t)size * (size_t)size * sizeof(DATATYPE)); VRFY((indata != NULL), "HDmalloc succeeded for indata"); - outdata =(DATATYPE*)HDmalloc((size_t)(size * size * sizeof(DATATYPE))); + outdata =(DATATYPE*)HDmalloc((size_t)size * (size_t)size * sizeof(DATATYPE)); VRFY((outdata != NULL), "HDmalloc succeeded for outdata"); /* open every group under root group. */ @@ -1172,7 +1174,7 @@ write_dataset(hid_t memspace, hid_t filespace, hid_t gid) size = get_size(); - outme = HDmalloc((size_t)(size * size * sizeof(double))); + outme = HDmalloc((size_t)size * (size_t)size * sizeof(double)); VRFY((outme != NULL), "HDmalloc succeeded for outme"); for(n = 0; n < NDATASET; n++) { @@ -1332,10 +1334,10 @@ read_dataset(hid_t memspace, hid_t filespace, hid_t gid) size = get_size(); - indata =(DATATYPE*)HDmalloc((size_t)(size * size * sizeof(DATATYPE))); + indata =(DATATYPE*)HDmalloc((size_t)size * (size_t)size * sizeof(DATATYPE)); VRFY((indata != NULL), "HDmalloc succeeded for indata"); - outdata =(DATATYPE*)HDmalloc((size_t)(size * size * sizeof(DATATYPE))); + outdata =(DATATYPE*)HDmalloc((size_t)size * (size_t)size * sizeof(DATATYPE)); VRFY((outdata != NULL), "HDmalloc succeeded for outdata"); for(n=0; n<NDATASET; n++) { @@ -1489,8 +1491,8 @@ check_value(DATATYPE *indata, DATATYPE *outdata, int size) get_slab(chunk_origin, chunk_dims, count, NULL, size); - indata += chunk_origin[0]*size; - outdata += chunk_origin[0]*size; + indata += chunk_origin[0]*(hsize_t)size; + outdata += chunk_origin[0]*(hsize_t)size; for(i=chunk_origin[0]; i<(chunk_origin[0]+chunk_dims[0]); i++) for(j=chunk_origin[1]; j<(chunk_origin[1]+chunk_dims[1]); j++) { if(*indata != *outdata ) @@ -1523,15 +1525,15 @@ get_slab(hsize_t chunk_origin[], hsize_t chunk_dims[], hsize_t count[], MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); if(chunk_origin != NULL) { - chunk_origin[0] = mpi_rank *(size/mpi_size); + chunk_origin[0] = (hsize_t)mpi_rank * (hsize_t)(size/mpi_size); chunk_origin[1] = 0; } if(chunk_dims != NULL) { - chunk_dims[0] = size/mpi_size; - chunk_dims[1] = size; + chunk_dims[0] = (hsize_t)(size/mpi_size); + chunk_dims[1] = (hsize_t)size; } if(file_dims != NULL) - file_dims[0] = file_dims[1] = size; + file_dims[0] = file_dims[1] = (hsize_t)size; if(count != NULL) count[0] = count[1] = 1; } @@ -1959,7 +1961,7 @@ void rr_obj_hdr_flush_confusion_writer(MPI_Comm comm) /* private communicator size and rank */ int mpi_size; int mpi_rank; - int mrc; /* mpi error code */ + int mrc; /* mpi error code */ /* steps to verify and have been verified */ int steps = 0; int steps_done = 0; @@ -2477,7 +2479,7 @@ void rr_obj_hdr_flush_confusion_reader(MPI_Comm comm) /* compare read data with expected data */ for ( j = 0; j < LOCAL_DATA_SIZE; j++ ) - if (data_read[j] != data[j]){ + if (!H5_DBL_ABS_EQUAL(data_read[j], data[j])){ HDfprintf(stdout, "%0d:%s: Reading datasets value failed in " "Dataset %d, at position %d: expect %f, got %f.\n", @@ -2540,7 +2542,7 @@ void rr_obj_hdr_flush_confusion_reader(MPI_Comm comm) VRFY((err >= 0), "H5Aread failed.\n"); /* compare read attribute data with expected data */ for ( j = 0; j < LOCAL_DATA_SIZE; j++ ) - if (att_read[j] != att[j]){ + if (!H5_DBL_ABS_EQUAL(att_read[j], att[j])){ HDfprintf(stdout, "%0d:%s: Mismatched attribute data read in Dataset %d, at position %d: expect %f, got %f.\n", mpi_rank, fcn_name, i, j, att[j], att_read[j]); @@ -2592,7 +2594,7 @@ void rr_obj_hdr_flush_confusion_reader(MPI_Comm comm) VRFY((err >= 0), "H5Aread failed.\n"); /* compare read attribute data with expected data */ for ( j = 0; j < LARGE_ATTR_SIZE; j++ ) - if (lg_att_read[j] != lg_att[j]){ + if (!H5_DBL_ABS_EQUAL(lg_att_read[j], lg_att[j])){ HDfprintf(stdout, "%0d:%s: Mismatched large attribute data read in Dataset %d, at position %d: expect %f, got %f.\n", mpi_rank, fcn_name, i, j, lg_att[j], lg_att_read[j]); diff --git a/testpar/t_mpi.c b/testpar/t_mpi.c index 91b8f8c..064fb57 100644 --- a/testpar/t_mpi.c +++ b/testpar/t_mpi.c @@ -302,7 +302,7 @@ static int test_mpio_gb_file(char *filename) { "proc %d: write to mpi_off=%016llx, %lld\n", mpi_rank, mpi_off, mpi_off); /* set data to some trivial pattern for easy verification */ - for (j = 0; j < MB; j++) + for (j = 0; j < MB; j++) H5_CHECKED_ASSIGN(*(buf + j), int8_t, i * mpi_size + mpi_rank, int); if (VERBOSE_MED) HDfprintf(stdout, @@ -526,7 +526,7 @@ static int test_mpio_1wMr(char *filename, int special_request) { * ==================================================*/ irank = 0; for (i = 0; i < DIMSIZE; i++) - H5_CHECKED_ASSIGN(writedata[i], uint8_t, irank * DIMSIZE + i, int) + H5_CHECKED_ASSIGN(writedata[i], uint8_t, irank * DIMSIZE + i, int) mpi_off = irank * DIMSIZE; /* Only one process writes */ @@ -697,7 +697,7 @@ static int test_mpio_derived_dtype(char *filename) { MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); retcode = 0; for (i = 0; i < 3; i++) - H5_CHECKED_ASSIGN(buf[i], int8_t, i + 1, int); + buf[i] = (char)(i + 1); if ((mpi_err = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_RDWR | MPI_MODE_CREATE, MPI_INFO_NULL, &fh)) diff --git a/testpar/t_prestart.c b/testpar/t_prestart.c index d75e627..fc9d475 100644 --- a/testpar/t_prestart.c +++ b/testpar/t_prestart.c @@ -81,13 +81,13 @@ main (int argc, char **argv) VRFY((data_array != NULL), "data_array HDmalloc succeeded"); /* Each process takes a slabs of rows. */ - block[0] = dims[0]/mpi_size; + block[0] = dims[0]/(hsize_t)mpi_size; block[1] = dims[1]; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; - start[0] = mpi_rank*block[0]; + start[0] = (hsize_t)mpi_rank*block[0]; start[1] = 0; ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block); @@ -109,7 +109,7 @@ main (int argc, char **argv) if(*dataptr != mpi_rank+1) { HDprintf("Dataset Verify failed at [%lu][%lu](row %lu, col %lu): expect %d, got %d\n", (unsigned long)i, (unsigned long)j, - (unsigned long)(i+start[0]), (unsigned long)(j+start[1]), + (unsigned long)((hsize_t)i+start[0]), (unsigned long)((hsize_t)j+start[1]), mpi_rank+1, *(dataptr)); nerrors ++; } diff --git a/testpar/t_prop.c b/testpar/t_prop.c index fd89c6a..62e4dde 100644 --- a/testpar/t_prop.c +++ b/testpar/t_prop.c @@ -53,7 +53,7 @@ test_encode_decode(hid_t orig_pl, int mpi_rank, int recv_proc) void *rbuf; MPI_Recv(&recv_size, 1, MPI_INT, 0, 123, MPI_COMM_WORLD, &status); - buf_size = recv_size; + buf_size = (size_t)recv_size; rbuf = (uint8_t *)HDmalloc(buf_size); MPI_Recv(rbuf, recv_size, MPI_BYTE, 0, 124, MPI_COMM_WORLD, &status); diff --git a/testpar/t_pshutdown.c b/testpar/t_pshutdown.c index def7071..ddbae9e 100644 --- a/testpar/t_pshutdown.c +++ b/testpar/t_pshutdown.c @@ -68,8 +68,8 @@ main (int argc, char **argv) grp_id = H5Gcreate2(file_id, "Group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); VRFY((grp_id >= 0), "H5Gcreate succeeded"); - dims[0] = ROW_FACTOR*mpi_size; - dims[1] = COL_FACTOR*mpi_size; + dims[0] = (hsize_t)ROW_FACTOR*(hsize_t)mpi_size; + dims[1] = (hsize_t)COL_FACTOR*(hsize_t)mpi_size; sid = H5Screate_simple (RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); @@ -81,13 +81,13 @@ main (int argc, char **argv) VRFY((data_array != NULL), "data_array HDmalloc succeeded"); /* Each process takes a slabs of rows. */ - block[0] = dims[0]/mpi_size; + block[0] = dims[0]/(hsize_t)mpi_size; block[1] = dims[1]; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; - start[0] = mpi_rank*block[0]; + start[0] = (hsize_t)mpi_rank*block[0]; start[1] = 0; /* put some trivial data in the data_array */ diff --git a/testpar/t_shapesame.c b/testpar/t_shapesame.c index abbfbb3..c12cf5a 100644 --- a/testpar/t_shapesame.c +++ b/testpar/t_shapesame.c @@ -1981,7 +1981,6 @@ contig_hs_dr_pio_test__run_test(const int test_num, #if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG const char *fcnName = "contig_hs_dr_pio_test__run_test()"; #endif /* CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG */ - int mpi_rank; struct hs_dr_pio_test_vars_t test_vars = { /* int mpi_size = */ -1, @@ -2049,9 +2048,6 @@ contig_hs_dr_pio_test__run_test(const int test_num, small_rank, large_rank, use_collective_io, dset_type, express_test, tv_ptr); - /* initialize the local copy of mpi_rank */ - mpi_rank = tv_ptr->mpi_rank; - /* initialize skips & max_skips */ tv_ptr->skips = *skips_ptr; tv_ptr->max_skips = max_skips; @@ -3520,7 +3516,6 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) const char *fcnName = "ckrbrd_hs_dr_pio_test__m2d_l2s()"; #endif /* CHECKER_BOARD_HS_DR_PIO_TEST__M2D_L2S__DEBUG */ hbool_t data_ok = FALSE; - hbool_t mis_match = FALSE; int i, j, k, l; size_t u; size_t start_index; @@ -3768,8 +3763,6 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) /* verify that expected data is retrieved */ - mis_match = FALSE; - expected_value = (uint32_t)( (i * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + @@ -3878,7 +3871,6 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) const char *fcnName = "ckrbrd_hs_dr_pio_test__m2d_s2l()"; #endif /* CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG */ hbool_t data_ok = FALSE; - hbool_t mis_match = FALSE; int i, j, k, l; size_t u; size_t start_index; @@ -4138,8 +4130,6 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) HDassert( stop_index < tv_ptr->large_ds_size ); - mis_match = FALSE; - data_ok = TRUE; ptr_1 = tv_ptr->large_ds_buf_1; @@ -4235,7 +4225,6 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num, #if CKRBRD_HS_DR_PIO_TEST__RUN_TEST__DEBUG const char *fcnName = "ckrbrd_hs_dr_pio_test__run_test()"; #endif /* CKRBRD_HS_DR_PIO_TEST__RUN_TEST__DEBUG */ - int mpi_rank; /* needed by VRFY */ struct hs_dr_pio_test_vars_t test_vars = { /* int mpi_size = */ -1, @@ -4305,10 +4294,6 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num, tv_ptr); - /* initialize the local copy of mpi_rank */ - mpi_rank = tv_ptr->mpi_rank; - - /* initialize skips & max_skips */ tv_ptr->skips = *skips_ptr; tv_ptr->max_skips = max_skips; diff --git a/testpar/t_span_tree.c b/testpar/t_span_tree.c index 9a4ac4d..e1a86a1 100644 --- a/testpar/t_span_tree.c +++ b/testpar/t_span_tree.c @@ -37,7 +37,7 @@ static void coll_write_test(int chunk_factor); -static void coll_read_test(int chunk_factor); +static void coll_read_test(void); /*------------------------------------------------------------------------- @@ -84,7 +84,7 @@ void coll_irregular_cont_read(void) { - coll_read_test(0); + coll_read_test(); } @@ -133,7 +133,7 @@ void coll_irregular_simple_chunk_read(void) { - coll_read_test(1); + coll_read_test(); } @@ -181,7 +181,7 @@ void coll_irregular_complex_chunk_read(void) { - coll_read_test(4); + coll_read_test(); } @@ -246,19 +246,19 @@ void coll_write_test(int chunk_factor) * Buffers' initialization. */ - mdim1[0] = MSPACE1_DIM *mpi_size; + mdim1[0] = (hsize_t)(MSPACE1_DIM*mpi_size); mdim[0] = MSPACE_DIM1; - mdim[1] = MSPACE_DIM2*mpi_size; + mdim[1] = (hsize_t)(MSPACE_DIM2*mpi_size); fsdim[0] = FSPACE_DIM1; - fsdim[1] = FSPACE_DIM2*mpi_size; + fsdim[1] = (hsize_t)(FSPACE_DIM2*mpi_size); - vector = (int*)HDmalloc(sizeof(int)*mdim1[0]*mpi_size); - matrix_out = (int*)HDmalloc(sizeof(int)*mdim[0]*mdim[1]*mpi_size); - matrix_out1 = (int*)HDmalloc(sizeof(int)*mdim[0]*mdim[1]*mpi_size); + vector = (int*)HDmalloc(sizeof(int)*(size_t)mdim1[0]*(size_t)mpi_size); + matrix_out = (int*)HDmalloc(sizeof(int)*(size_t)mdim[0]*(size_t)mdim[1]*(size_t)mpi_size); + matrix_out1 = (int*)HDmalloc(sizeof(int)*(size_t)mdim[0]*(size_t)mdim[1]*(size_t)mpi_size); - HDmemset(vector,0,sizeof(int)*mdim1[0]*mpi_size); + HDmemset(vector,0,sizeof(int)*(size_t)mdim1[0]*(size_t)mpi_size); vector[0] = vector[MSPACE1_DIM*mpi_size - 1] = -1; - for (i = 1; i < MSPACE1_DIM*mpi_size - 1; i++) vector[i] = i; + for (i = 1; i < MSPACE1_DIM*mpi_size - 1; i++) H5_CHECKED_ASSIGN(vector[i], int, i, unsigned); /* Grab file access property list */ facc_plist = create_faccess_plist(comm, info, facc_type); @@ -280,8 +280,8 @@ void coll_write_test(int chunk_factor) VRFY((ret >= 0),"Fill value creation property list succeeded"); if(chunk_factor != 0) { - chunk_dims[0] = fsdim[0] / chunk_factor; - chunk_dims[1] = fsdim[1] / chunk_factor; + chunk_dims[0] = fsdim[0] / (hsize_t)chunk_factor; + chunk_dims[1] = fsdim[1] / (hsize_t)chunk_factor; ret = H5Pset_chunk(dcrt_plist, 2, chunk_dims); VRFY((ret >= 0),"chunk creation property list succeeded"); } @@ -317,7 +317,7 @@ void coll_write_test(int chunk_factor) */ start[0] = FHSTART0; - start[1] = FHSTART1 + mpi_rank * FHSTRIDE1 * FHCOUNT1; + start[1] = (hsize_t)(FHSTART1 + mpi_rank * FHSTRIDE1 * FHCOUNT1); stride[0] = FHSTRIDE0; stride[1] = FHSTRIDE1; count[0] = FHCOUNT0; @@ -338,7 +338,7 @@ void coll_write_test(int chunk_factor) */ start[0] = SHSTART0; - start[1] = SHSTART1+SHCOUNT1*SHBLOCK1*mpi_rank; + start[1] = (hsize_t)(SHSTART1+SHCOUNT1*SHBLOCK1*mpi_rank); stride[0] = SHSTRIDE0; stride[1] = SHSTRIDE1; count[0] = SHCOUNT0; @@ -476,7 +476,7 @@ void coll_write_test(int chunk_factor) * */ start[0] = RFFHSTART0; - start[1] = RFFHSTART1+mpi_rank*RFFHCOUNT1; + start[1] = (hsize_t)(RFFHSTART1+mpi_rank*RFFHCOUNT1); block[0] = RFFHBLOCK0; block[1] = RFFHBLOCK1; stride[0] = RFFHSTRIDE0; @@ -503,7 +503,7 @@ void coll_write_test(int chunk_factor) */ start[0] = RFSHSTART0; - start[1] = RFSHSTART1+RFSHCOUNT1*mpi_rank; + start[1] = (hsize_t)(RFSHSTART1+RFSHCOUNT1*mpi_rank); block[0] = RFSHBLOCK0; block[1] = RFSHBLOCK1; stride[0] = RFSHSTRIDE0; @@ -542,7 +542,7 @@ void coll_write_test(int chunk_factor) start[0] = RMFHSTART0; - start[1] = RMFHSTART1+mpi_rank*RMFHCOUNT1; + start[1] = (hsize_t)(RMFHSTART1+mpi_rank*RMFHCOUNT1); block[0] = RMFHBLOCK0; block[1] = RMFHBLOCK1; stride[0] = RMFHSTRIDE0; @@ -565,7 +565,7 @@ void coll_write_test(int chunk_factor) * */ start[0] = RMSHSTART0; - start[1] = RMSHSTART1+mpi_rank*RMSHCOUNT1; + start[1] = (hsize_t)(RMSHSTART1+mpi_rank*RMSHCOUNT1); block[0] = RMSHBLOCK0; block[1] = RMSHBLOCK1; stride[0] = RMSHSTRIDE0; @@ -580,8 +580,8 @@ void coll_write_test(int chunk_factor) * Initialize data buffer. */ - HDmemset(matrix_out,0,sizeof(int)*MSPACE_DIM1*MSPACE_DIM2*mpi_size); - HDmemset(matrix_out1,0,sizeof(int)*MSPACE_DIM1*MSPACE_DIM2*mpi_size); + HDmemset(matrix_out,0,sizeof(int)*(size_t)MSPACE_DIM1*(size_t)MSPACE_DIM2*(size_t)mpi_size); + HDmemset(matrix_out1,0,sizeof(int)*(size_t)MSPACE_DIM1*(size_t)MSPACE_DIM2*(size_t)mpi_size); /* * Read data back to the buffer matrix_out. */ @@ -662,7 +662,7 @@ void coll_write_test(int chunk_factor) *------------------------------------------------------------------------- */ static void -coll_read_test(int chunk_factor) +coll_read_test(void) { const char *filename; @@ -704,9 +704,9 @@ coll_read_test(int chunk_factor) /* Initialize the buffer */ mdim[0] = MSPACE_DIM1; - mdim[1] = MSPACE_DIM2*mpi_size; - matrix_out =(int*)HDmalloc(sizeof(int)*MSPACE_DIM1*MSPACE_DIM2*mpi_size); - matrix_out1=(int*)HDmalloc(sizeof(int)*MSPACE_DIM1*MSPACE_DIM2*mpi_size); + mdim[1] = (hsize_t)(MSPACE_DIM2*mpi_size); + matrix_out =(int*)HDmalloc(sizeof(int)*(size_t)MSPACE_DIM1*(size_t)MSPACE_DIM2*(size_t)mpi_size); + matrix_out1=(int*)HDmalloc(sizeof(int)*(size_t)MSPACE_DIM1*(size_t)MSPACE_DIM2*(size_t)mpi_size); /*** For testing collective hyperslab selection read ***/ @@ -741,7 +741,7 @@ coll_read_test(int chunk_factor) * */ start[0] = RFFHSTART0; - start[1] = RFFHSTART1+mpi_rank*RFFHCOUNT1; + start[1] = (hsize_t)(RFFHSTART1+mpi_rank*RFFHCOUNT1); block[0] = RFFHBLOCK0; block[1] = RFFHBLOCK1; stride[0] = RFFHSTRIDE0; @@ -761,7 +761,7 @@ coll_read_test(int chunk_factor) * */ start[0] = RFSHSTART0; - start[1] = RFSHSTART1+RFSHCOUNT1*mpi_rank; + start[1] = (hsize_t)(RFSHSTART1+RFSHCOUNT1*mpi_rank); block[0] = RFSHBLOCK0; block[1] = RFSHBLOCK1; stride[0] = RFSHSTRIDE0; @@ -791,7 +791,7 @@ coll_read_test(int chunk_factor) */ start[0] = RMFHSTART0; - start[1] = RMFHSTART1+mpi_rank*RMFHCOUNT1; + start[1] = (hsize_t)(RMFHSTART1+mpi_rank*RMFHCOUNT1); block[0] = RMFHBLOCK0; block[1] = RMFHBLOCK1; stride[0] = RMFHSTRIDE0; @@ -813,7 +813,7 @@ coll_read_test(int chunk_factor) * */ start[0] = RMSHSTART0; - start[1] = RMSHSTART1+mpi_rank*RMSHCOUNT1; + start[1] = (hsize_t)(RMSHSTART1+mpi_rank*RMSHCOUNT1); block[0] = RMSHBLOCK0; block[1] = RMSHBLOCK1; stride[0] = RMSHSTRIDE0; @@ -828,8 +828,8 @@ coll_read_test(int chunk_factor) * Initialize data buffer. */ - HDmemset(matrix_out,0,sizeof(int)*MSPACE_DIM1*MSPACE_DIM2*mpi_size); - HDmemset(matrix_out1,0,sizeof(int)*MSPACE_DIM1*MSPACE_DIM2*mpi_size); + HDmemset(matrix_out,0,sizeof(int)*(size_t)MSPACE_DIM1*(size_t)MSPACE_DIM2*(size_t)mpi_size); + HDmemset(matrix_out1,0,sizeof(int)*(size_t)MSPACE_DIM1*(size_t)MSPACE_DIM2*(size_t)mpi_size); /* * Read data back to the buffer matrix_out. @@ -923,7 +923,9 @@ coll_read_test(int chunk_factor) ****************************************************************/ #define LDSCT_DS_RANK 5 +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG #define LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK 0 +#endif #define LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG 0 @@ -1002,9 +1004,9 @@ lower_dim_size_comp_test__select_checker_board( * pre-C99 compilers again. */ - base_count = dims[sel_offset] / (checker_edge_size * 2); + base_count = dims[sel_offset] / (hsize_t)(checker_edge_size * 2); - if ( (dims[sel_rank] % (checker_edge_size * 2)) > 0 ) { + if ( (dims[sel_rank] % (hsize_t)(checker_edge_size * 2)) > 0 ) { base_count++; } @@ -1558,7 +1560,9 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, size_t small_ds_size; size_t small_ds_slice_size; size_t large_ds_size; +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG size_t large_ds_slice_size; +#endif uint32_t expected_value; uint32_t * small_ds_buf_0 = NULL; uint32_t * small_ds_buf_1 = NULL; @@ -1612,9 +1616,10 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, small_ds_size = (size_t)((mpi_size + 1) * 1 * 1 * 10 * 10); small_ds_slice_size = (size_t) ( 1 * 1 * 10 * 10); large_ds_size = (size_t)((mpi_size + 1) * 10 * 10 * 10 * 10); - large_ds_slice_size = (size_t) (10 * 10 * 10 * 10); #if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG + large_ds_slice_size = (size_t) (10 * 10 * 10 * 10); + if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s:%d: small ds size / slice size = %d / %d.\n", fcnName, mpi_rank, diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index 92d2769..7830e25 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -274,9 +274,9 @@ build_match_list (const char *objname1, trav_info_t *info1, const char *objname2 trav_table_t *table = NULL; size_t idx; - H5TOOLS_DEBUG("build_match_list start - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); /* init */ - trav_table_init(&table); + trav_table_init(info1->fid, &table); if (table == NULL) { H5TOOLS_INFO("Cannot create traverse table"); H5TOOLS_GOTO_DONE_NO_RET(); @@ -314,10 +314,20 @@ build_match_list (const char *objname1, trav_info_t *info1, const char *objname2 trav_table_addflags(infile, path1_lp, info1->paths[curr1].type, table); /* if the two point to the same target object, * mark that in table */ - if (info1->paths[curr1].fileno == info2->paths[curr2].fileno && - info1->paths[curr1].objno == info2->paths[curr2].objno) { - idx = table->nobjs - 1; - table->objs[idx].is_same_trgobj = 1; + if(info1->paths[curr1].fileno == info2->paths[curr2].fileno) { + int token_cmp; + + if(H5Otoken_cmp(info1->fid, &info1->paths[curr1].obj_token, + &info2->paths[curr2].obj_token, &token_cmp) < 0) { + H5TOOLS_INFO("Failed to compare object tokens"); + opts->err_stat = H5DIFF_ERR; + H5TOOLS_GOTO_DONE_NO_RET(); + } + + if(!token_cmp) { + idx = table->nobjs - 1; + table->objs[idx].is_same_trgobj = 1; + } } } curr1++; @@ -372,7 +382,7 @@ build_match_list (const char *objname1, trav_info_t *info1, const char *objname2 done: *table_out = table; - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); } @@ -382,7 +392,7 @@ done: * Purpose: Call back function from h5trav_visit(). *------------------------------------------------------------------------*/ static herr_t -trav_grp_objs(const char *path, const H5O_info_t *oinfo, +trav_grp_objs(const char *path, const H5O_info2_t *oinfo, const char *already_visited, void *udata) { trav_info_visit_obj(path, oinfo, already_visited, udata); @@ -397,7 +407,7 @@ trav_grp_objs(const char *path, const H5O_info_t *oinfo, * Track and extra checkings while visiting all symbolic-links. *------------------------------------------------------------------------*/ static herr_t -trav_grp_symlinks(const char *path, const H5L_info_t *linfo, void *udata) +trav_grp_symlinks(const char *path, const H5L_info2_t *linfo, void *udata) { trav_info_t *tinfo = (trav_info_t *)udata; diff_opt_t *opts = (diff_opt_t *)tinfo->opts; @@ -406,6 +416,7 @@ trav_grp_symlinks(const char *path, const H5L_info_t *linfo, void *udata) const char *ext_path; herr_t ret_value = SUCCEED; + H5TOOLS_START_DEBUG(""); /* init linkinfo struct */ HDmemset(&lnk_info, 0, sizeof(h5tool_link_info_t)); @@ -489,7 +500,7 @@ trav_grp_symlinks(const char *path, const H5L_info_t *linfo, void *udata) done: if (lnk_info.trg_path) HDfree(lnk_info.trg_path); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -504,14 +515,10 @@ done: *------------------------------------------------------------------------- */ hsize_t -h5diff(const char *fname1, - const char *fname2, - const char *objname1, - const char *objname2, - diff_opt_t *opts) +h5diff(const char *fname1, const char *fname2, const char *objname1, const char *objname2, diff_opt_t *opts) { - hid_t file1_id = -1; - hid_t file2_id = -1; + hid_t file1_id = H5I_INVALID_HID; + hid_t file2_id = H5I_INVALID_HID; char filenames[2][MAX_FILENAME]; hsize_t nfound = 0; int l_ret1 = -1; @@ -523,7 +530,7 @@ h5diff(const char *fname1, h5trav_type_t obj1type = H5TRAV_TYPE_GROUP; h5trav_type_t obj2type = H5TRAV_TYPE_GROUP; /* for single object */ - H5O_info_t oinfo1, oinfo2; /* object info */ + H5O_info2_t oinfo1, oinfo2; /* object info */ trav_info_t *info1_obj = NULL; trav_info_t *info2_obj = NULL; /* for group object */ @@ -533,8 +540,8 @@ h5diff(const char *fname1, trav_info_t *info1_lp = NULL; trav_info_t *info2_lp = NULL; /* link info from specified object */ - H5L_info_t src_linfo1; - H5L_info_t src_linfo2; + H5L_info2_t src_linfo1; + H5L_info2_t src_linfo2; /* link info from member object */ h5tool_link_info_t trg_linfo1; h5tool_link_info_t trg_linfo2; @@ -542,7 +549,7 @@ h5diff(const char *fname1, trav_table_t *match_list = NULL; diff_err_t ret_value = H5DIFF_NO_ERR; - H5TOOLS_DEBUG("h5diff start"); + H5TOOLS_START_DEBUG(""); /* init filenames */ HDmemset(filenames, 0, MAX_FILENAME * 2); /* init link info struct */ @@ -635,7 +642,7 @@ h5diff(const char *fname1, H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Error: Object could not be found"); } /* get info from link */ - if(H5Lget_info(file1_id, obj1fullname, &src_linfo1, H5P_DEFAULT) < 0) { + if(H5Lget_info2(file1_id, obj1fullname, &src_linfo1, H5P_DEFAULT) < 0) { parallel_print("Unable to get link info from <%s>\n", obj1fullname); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Lget_info failed"); } @@ -651,14 +658,14 @@ h5diff(const char *fname1, /* optional data pass */ info1_obj->opts = (diff_opt_t*)opts; - if(H5Oget_info_by_name2(file1_id, obj1fullname, &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name3(file1_id, obj1fullname, &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { parallel_print("Error: Could not get file contents\n"); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Error: Could not get file contents"); } obj1type = (h5trav_type_t)oinfo1.type; trav_info_add(info1_obj, obj1fullname, obj1type); idx = info1_obj->nused - 1; - info1_obj->paths[idx].objno = oinfo1.addr; + HDmemcpy(&info1_obj->paths[idx].obj_token, &oinfo1.token, sizeof(H5O_token_t)); info1_obj->paths[idx].fileno = oinfo1.fileno; } else if (src_linfo1.type == H5L_TYPE_SOFT) { @@ -685,7 +692,7 @@ h5diff(const char *fname1, H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Error: Object could not be found"); } /* get info from link */ - if(H5Lget_info(file2_id, obj2fullname, &src_linfo2, H5P_DEFAULT) < 0) { + if(H5Lget_info2(file2_id, obj2fullname, &src_linfo2, H5P_DEFAULT) < 0) { parallel_print("Unable to get link info from <%s>\n", obj2fullname); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Lget_info failed"); } @@ -701,14 +708,14 @@ h5diff(const char *fname1, /* optional data pass */ info2_obj->opts = (diff_opt_t*)opts; - if(H5Oget_info_by_name2(file2_id, obj2fullname, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name3(file2_id, obj2fullname, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { parallel_print("Error: Could not get file contents\n"); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Error: Could not get file contents"); } obj2type = (h5trav_type_t)oinfo2.type; trav_info_add(info2_obj, obj2fullname, obj2type); idx = info2_obj->nused - 1; - info2_obj->paths[idx].objno = oinfo2.addr; + HDmemcpy(&info2_obj->paths[idx].obj_token, &oinfo2.token, sizeof(H5O_token_t)); info2_obj->paths[idx].fileno = oinfo2.fileno; } else if (src_linfo2.type == H5L_TYPE_SOFT) { @@ -778,8 +785,8 @@ h5diff(const char *fname1, size_t idx = info1_lp->nused - 1; H5TOOLS_DEBUG("h5diff ... ... ... info1_obj not null"); + HDmemcpy(&info1_lp->paths[idx].obj_token, &trg_linfo1.obj_token, sizeof(H5O_token_t)); info1_lp->paths[idx].type = (h5trav_type_t)trg_linfo1.trg_type; - info1_lp->paths[idx].objno = trg_linfo1.objno; info1_lp->paths[idx].fileno = trg_linfo1.fileno; } H5TOOLS_DEBUG("h5diff check symbolic link (object1) finished"); @@ -818,8 +825,8 @@ h5diff(const char *fname1, size_t idx = info2_lp->nused - 1; H5TOOLS_DEBUG("h5diff ... ... ... info2_obj not null"); + HDmemcpy(&info2_lp->paths[idx].obj_token, &trg_linfo2.obj_token, sizeof(H5O_token_t)); info2_lp->paths[idx].type = (h5trav_type_t)trg_linfo2.trg_type; - info2_lp->paths[idx].objno = trg_linfo2.objno; info2_lp->paths[idx].fileno = trg_linfo2.fileno; } H5TOOLS_DEBUG("h5diff check symbolic link (object1) finished"); @@ -962,9 +969,8 @@ done: H5Fclose(file2_id); } H5E_END_TRY; - H5TOOLS_DEBUG("h5diff finish - errstat:%d", opts->err_stat); + H5TOOLS_ENDDEBUG(" - errstat:%d", opts->err_stat); - H5TOOLS_ENDDEBUG("exit"); return nfound; } @@ -1002,7 +1008,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, size_t idx2 = 0; diff_err_t ret_value = opts->err_stat; - H5TOOLS_DEBUG("diff_match start - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); /* * if not root, prepare object name to be pre-appended to group path to * make full path @@ -1042,7 +1048,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, */ #ifdef H5_HAVE_PARALLEL { - char *workerTasks = (char*)HDmalloc((g_nTasks - 1) * sizeof(char)); + char *workerTasks = (char*)HDmalloc((size_t)(g_nTasks - 1) * sizeof(char)); int n; int busyTasks = 0; struct diffs_found nFoundbyWorker; @@ -1051,7 +1057,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, MPI_Status Status; /*set all tasks as free */ - HDmemset(workerTasks, 1, (g_nTasks - 1)); + HDmemset(workerTasks, 1, (size_t)(g_nTasks - 1) * sizeof(char)); #endif for(i = 0; i < table->nobjs; i++) { @@ -1340,7 +1346,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, } /* end while */ for(i = 1; i < g_nTasks; i++) - MPI_Send(NULL, 0, MPI_BYTE, i, MPI_TAG_END, MPI_COMM_WORLD); + MPI_Send(NULL, 0, MPI_BYTE, (int)i, MPI_TAG_END, MPI_COMM_WORLD); /* Print any final data waiting in our queue */ print_incoming_data(); @@ -1357,9 +1363,8 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, if (table) trav_table_free(table); - H5TOOLS_DEBUG("diff_match finish diffs=%d - errstat:%d", nfound, opts->err_stat); + H5TOOLS_ENDDEBUG(" diffs=%d - errstat:%d", nfound, opts->err_stat); - H5TOOLS_ENDDEBUG("exit"); return nfound; } @@ -1378,12 +1383,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, *------------------------------------------------------------------------- */ hsize_t -diff(hid_t file1_id, - const char *path1, - hid_t file2_id, - const char *path2, - diff_opt_t * opts, - diff_args_t *argdata) +diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_opt_t * opts, diff_args_t *argdata) { int status = -1; hid_t dset1_id = H5I_INVALID_HID; @@ -1403,7 +1403,7 @@ diff(hid_t file1_id, h5tool_link_info_t linkinfo1; h5tool_link_info_t linkinfo2; - H5TOOLS_DEBUG("diff start - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); /*init link info struct */ HDmemset(&linkinfo1, 0, sizeof(h5tool_link_info_t)); @@ -1793,9 +1793,8 @@ done: /* enable error reporting */ } H5E_END_TRY; - H5TOOLS_DEBUG("diff finish:%d - errstat:%d", nfound, opts->err_stat); + H5TOOLS_ENDDEBUG(": %d - errstat:%d", nfound, opts->err_stat); - H5TOOLS_ENDDEBUG("exit"); return nfound; } diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index 98b9db3..3127870 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -261,19 +261,9 @@ static void close_member_types(mcomp_t *members); *------------------------------------------------------------------------- */ -hsize_t diff_array( - void *_mem1, - void *_mem2, - hsize_t nelmts, - hsize_t hyper_start, - int rank, - hsize_t *dims, - diff_opt_t *opts, - const char *name1, - const char *name2, - hid_t m_type, - hid_t container1_id, - hid_t container2_id) /* dataset where the reference came from*/ +hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start, + int rank, hsize_t *dims, diff_opt_t *opts, const char *name1, const char *name2, + hid_t m_type, hid_t container1_id, hid_t container2_id) { hsize_t nfound = 0; /* number of differences found */ size_t size; /* size of datum */ @@ -287,7 +277,7 @@ hsize_t diff_array( mcomp_t members; H5T_class_t type_class; - H5TOOLS_DEBUG("diff_array start - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); /* get the size. */ size = H5Tget_size(m_type); type_class = H5Tget_class(m_type); @@ -384,7 +374,7 @@ hsize_t diff_array( } /* switch */ H5TOOLS_DEBUG("diff_array finish:%d - errstat:%d", nfound, opts->err_stat); - H5TOOLS_ENDDEBUG("exit: %d", nfound); + H5TOOLS_ENDDEBUG(": %d", nfound); return nfound; } @@ -421,20 +411,9 @@ hsize_t diff_array( * Dereference the object and compare the type (basic object type). *------------------------------------------------------------------------- */ -static hsize_t diff_datum( - void *_mem1, - void *_mem2, - hid_t m_type, - hsize_t index, - int rank, - hsize_t *dims, - hsize_t *acc, - hsize_t *pos, - diff_opt_t *opts, - const char *obj1, - const char *obj2, - hid_t container1_id, - hid_t container2_id, /*where the reference came from*/ +static hsize_t diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t index, int rank, + hsize_t *dims, hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, const char *obj2, + hid_t container1_id, hid_t container2_id, int *ph, /*print header */ mcomp_t *members) /*compound members */ { @@ -456,7 +435,7 @@ static hsize_t diff_datum( hbool_t both_zero; diff_err_t ret_value = opts->err_stat; - H5TOOLS_DEBUG("diff_datum start - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); type_size = H5Tget_size(m_type); type_class = H5Tget_class(m_type); @@ -487,7 +466,7 @@ static hsize_t diff_datum( case H5T_COMPOUND: H5TOOLS_DEBUG("diff_datum H5T_COMPOUND"); { - hid_t memb_type = -1; + hid_t memb_type = H5I_INVALID_HID; nmembs = members->n; for (j = 0; j < nmembs; j++) { @@ -698,7 +677,7 @@ static hsize_t diff_datum( */ case H5T_ARRAY: { - hid_t memb_type = -1; + hid_t memb_type = H5I_INVALID_HID; hsize_t adims[H5S_MAX_RANK]; int ndims; @@ -734,8 +713,8 @@ static hsize_t diff_datum( H5TOOLS_GOTO_DONE(opts->err_stat); } else if (!iszero1 && !iszero2) { - hid_t obj1_id = -1; - hid_t obj2_id = -1; + hid_t obj1_id = H5I_INVALID_HID; + hid_t obj2_id = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_STD_REF @@ -744,10 +723,10 @@ static hsize_t diff_datum( */ if (H5Tequal(m_type, H5T_STD_REF)) { /* if (type_size == H5R_STD_REF_SIZE) */ - hid_t region1_id = -1; - hid_t region2_id = -1; - H5R_ref_t *ref1_buf = (const H5R_ref_t *)_mem1; - H5R_ref_t *ref2_buf = (const H5R_ref_t *)_mem2; + hid_t region1_id = H5I_INVALID_HID; + hid_t region2_id = H5I_INVALID_HID; + H5R_ref_t *ref1_buf = (H5R_ref_t *)_mem1; + H5R_ref_t *ref2_buf = (H5R_ref_t *)_mem2; H5O_type_t obj1_type = -1; /* Object type */ H5O_type_t obj2_type = -1; /* Object type */ H5R_type_t ref_type; /* Reference type */ @@ -920,7 +899,7 @@ static hsize_t diff_datum( /* if (obj_id < 0) - could mean that no reference was written do not throw failure */ obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT); obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT); - if((obj1_id < 0) || (obj1_id < 0)) { + if((obj1_id < 0) || (obj2_id < 0)) { H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed"); } else { @@ -979,7 +958,7 @@ static hsize_t diff_datum( H5TOOLS_INFO("H5Ropen_attr object 2 failed"); } - if((obj1_id < 0) || (obj1_id < 0)) { + if((obj1_id < 0) || (obj2_id < 0)) { H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed"); } else { @@ -1024,8 +1003,8 @@ static hsize_t diff_datum( */ else if (H5Tequal(m_type, H5T_STD_REF_DSETREG)) { /* if (type_size == H5R_DSET_REG_REF_BUF_SIZE) */ - hid_t region1_id = -1; - hid_t region2_id = -1; + hid_t region1_id = H5I_INVALID_HID; + hid_t region2_id = H5I_INVALID_HID; H5TOOLS_INFO("H5T_STD_REF_DSETREG reference type"); @@ -1113,7 +1092,7 @@ static hsize_t diff_datum( */ case H5T_VLEN: { - hid_t memb_type = -1; + hid_t memb_type = H5I_INVALID_HID; H5TOOLS_DEBUG("diff_datum H5T_VLEN"); /* get the VL sequences's base datatype for each element */ @@ -2238,7 +2217,7 @@ done: H5TOOLS_DEBUG("diff_datum finish:%d - errstat:%d", nfound, opts->err_stat); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return nfound; } @@ -2327,7 +2306,7 @@ static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t hsize_t nfound_p = 0; /* point differences found */ hsize_t ret_value = 0; - H5TOOLS_DEBUG("diff_region start"); + H5TOOLS_START_DEBUG(""); ndims1 = H5Sget_simple_extent_ndims(region1_id); ndims2 = H5Sget_simple_extent_ndims(region2_id); @@ -2394,14 +2373,22 @@ static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t /* print differences if found */ if (nfound_b && opts->m_verbose) { - H5O_info_t oi1, oi2; + H5O_info2_t oi1, oi2; + char *obj1_str = NULL, *obj2_str = NULL; - H5Oget_info2(obj1_id, &oi1, H5O_INFO_BASIC); - H5Oget_info2(obj2_id, &oi2, H5O_INFO_BASIC); + H5Oget_info3(obj1_id, &oi1, H5O_INFO_BASIC); + H5Oget_info3(obj2_id, &oi2, H5O_INFO_BASIC); - parallel_print("Referenced dataset %lu %lu\n", (unsigned long) oi1.addr, (unsigned long) oi2.addr); + /* Convert object tokens into printable output */ + H5Otoken_to_str(obj1_id, &oi1.token, &obj1_str); + H5Otoken_to_str(obj2_id, &oi2.token, &obj2_str); + + parallel_print("Referenced dataset %s %s\n", obj1_str, obj2_str); parallel_print( "------------------------------------------------------------\n"); + H5free_memory(obj1_str); + H5free_memory(obj2_str); + parallel_print("Region blocks\n"); for (i = 0; i < nblocks1; i++) { parallel_print("block #%d", i); @@ -2500,7 +2487,7 @@ static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t ret_value = nfound_p + nfound_b; done: - H5TOOLS_ENDDEBUG("exit with diffs:%d", ret_value); + H5TOOLS_ENDDEBUG(" with diffs:%d", ret_value); return ret_value; } @@ -2522,7 +2509,7 @@ static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u, HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); - H5TOOLS_DEBUG("character_compare start %d=%d",temp1_uchar,temp2_uchar); + H5TOOLS_START_DEBUG(" %d=%d",temp1_uchar,temp2_uchar); if (temp1_uchar != temp2_uchar) { if (print_data(opts)) { @@ -2535,9 +2522,7 @@ static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u, } nfound++; } - H5TOOLS_DEBUG("character_compare finish"); - - H5TOOLS_ENDDEBUG("exit: %d", nfound); + H5TOOLS_ENDDEBUG(": %d", nfound); return nfound; } @@ -4509,13 +4494,13 @@ static hsize_t diff_ullong(unsigned char *mem1, unsigned char *mem2, static int ull2float(unsigned long long ull_value, float *f_value) { - hid_t dxpl_id = -1; + hid_t dxpl_id = H5I_INVALID_HID; unsigned char *buf = NULL; size_t src_size; size_t dst_size; int ret_value = 0; - H5TOOLS_DEBUG("ull2float start"); + H5TOOLS_START_DEBUG(""); if ((dxpl_id = H5Pcreate(H5P_DATASET_XFER)) < 0) H5TOOLS_GOTO_ERROR(FAIL, "H5Pcreate failed"); @@ -4540,9 +4525,7 @@ done: if (buf) HDfree(buf); - H5TOOLS_DEBUG("ull2float finish"); - - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -4576,12 +4559,16 @@ static hbool_t equal_double(double value, double expected, diff_opt_t *opts) { return FALSE; } - if (value == expected) - return TRUE; - - if (opts->use_system_epsilon) - if (ABS((value-expected)) < DBL_EPSILON) + if (opts->use_system_epsilon) { + /* Check equality within some epsilon */ + if (H5_DBL_ABS_EQUAL(value, expected)) + return TRUE; + } + else { + /* Check bits */ + if (!HDmemcmp(&value, &expected, sizeof(double))) return TRUE; + } return FALSE; } @@ -4620,12 +4607,16 @@ hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *opts) return FALSE; } - if (value == expected) - return TRUE; - - if (opts->use_system_epsilon) - if (ABS((value-expected)) < DBL_EPSILON) + if (opts->use_system_epsilon) { + /* Check equality within some epsilon */ + if (H5_LDBL_ABS_EQUAL(value, expected)) return TRUE; + } + else { + /* Check bits */ + if (!HDmemcmp(&value, &expected, sizeof(long double))) + return TRUE; + } return FALSE; } @@ -4662,12 +4653,16 @@ static hbool_t equal_float(float value, float expected, diff_opt_t *opts) { return FALSE; } - if (value == expected) - return TRUE; - - if (opts->use_system_epsilon) - if (ABS( (value-expected) ) < FLT_EPSILON) + if (opts->use_system_epsilon) { + /* Check equality within some epsilon */ + if (H5_FLT_ABS_EQUAL(value, expected)) return TRUE; + } + else { + /* Check bits */ + if (!HDmemcmp(&value, &expected, sizeof(float))) + return TRUE; + } return FALSE; } diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c index 5a85d79..087414d 100644 --- a/tools/lib/h5diff_attr.c +++ b/tools/lib/h5diff_attr.c @@ -140,7 +140,7 @@ static void table_attr_mark_exist(unsigned *exist, char *name, table_attrs_t *ta static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t ** table_out, diff_opt_t *opts) { table_attrs_t *table_lp = NULL; - H5O_info_t oinfo1, oinfo2; /* Object info */ + H5O_info2_t oinfo1, oinfo2; /* Object info */ hid_t attr1_id = H5I_INVALID_HID; /* attr ID */ hid_t attr2_id = H5I_INVALID_HID; /* attr ID */ size_t curr1 = 0; @@ -153,16 +153,16 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t herr_t ret_value = SUCCEED; - H5TOOLS_DEBUG("build_match_list_attrs start - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); - if(H5Oget_info2(loc1_id, &oinfo1, H5O_INFO_NUM_ATTRS) < 0) { + if(H5Oget_info3(loc1_id, &oinfo1, H5O_INFO_NUM_ATTRS) < 0) { H5TOOLS_GOTO_ERROR(FAIL, "H5Oget_info first object failed"); } - H5TOOLS_DEBUG("H5Oget_info2 loc1id=%d", oinfo1.num_attrs); - if(H5Oget_info2(loc2_id, &oinfo2, H5O_INFO_NUM_ATTRS) < 0) { + H5TOOLS_DEBUG("H5Oget_info3 loc1id=%d", oinfo1.num_attrs); + if(H5Oget_info3(loc2_id, &oinfo2, H5O_INFO_NUM_ATTRS) < 0) { H5TOOLS_GOTO_ERROR(FAIL, "H5Oget_info second object failed"); } - H5TOOLS_DEBUG("H5Oget_info2 loc2id=%d", oinfo2.num_attrs); + H5TOOLS_DEBUG("H5Oget_info3 loc2id=%d", oinfo2.num_attrs); table_attrs_init(&table_lp); if (table_lp == NULL) @@ -218,9 +218,9 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t /* close for next turn */ H5Aclose(attr1_id); - attr1_id = -1; + attr1_id = H5I_INVALID_HID; H5Aclose(attr2_id); - attr2_id = -1; + attr2_id = H5I_INVALID_HID; } /* end while */ /* list1 did not end */ @@ -244,7 +244,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t /* close for next turn */ H5Aclose(attr1_id); - attr1_id = -1; + attr1_id = H5I_INVALID_HID; } /* list2 did not end */ @@ -267,7 +267,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t /* close for next turn */ H5Aclose(attr2_id); - attr2_id = -1; + attr2_id = H5I_INVALID_HID; } /*------------------------------------------------------ @@ -299,9 +299,8 @@ done: H5Aclose(attr2_id); } H5E_END_TRY; - H5TOOLS_DEBUG("build_match_list_attrs end - errstat:%d", opts->err_stat); + H5TOOLS_ENDDEBUG(" - errstat:%d", opts->err_stat); - H5TOOLS_ENDDEBUG("exit"); return ret_value; } @@ -336,12 +335,11 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const hsize_t dims2[H5S_MAX_RANK]; /* dimensions of dataset */ char np1[512]; char np2[512]; - unsigned u; /* Local index variable */ hsize_t nfound = 0; int j; diff_err_t ret_value = opts->err_stat; - H5TOOLS_DEBUG("diff_attr_data start - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); /* get the datatypes */ if((ftype1_id = H5Aget_type(attr1_id)) < 0) @@ -518,9 +516,8 @@ done: H5Sclose(space2_id); } H5E_END_TRY; - H5TOOLS_DEBUG("diff_attr_data end - errstat:%d", opts->err_stat); + H5TOOLS_ENDDEBUG(" - errstat:%d", opts->err_stat); - H5TOOLS_ENDDEBUG("exit"); return nfound; } @@ -549,7 +546,7 @@ hsize_t diff_attr(hid_t loc1_id, hid_t loc2_id, const char *path1, const char *p hsize_t nfound_total = 0; diff_err_t ret_value = opts->err_stat; - H5TOOLS_DEBUG("diff_attr start - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); if(build_match_list_attrs(loc1_id, loc2_id, &match_list_attrs, opts) < 0) { H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "build_match_list_attrs failed"); @@ -601,8 +598,7 @@ done: H5Aclose(attr2_id); } H5E_END_TRY; - H5TOOLS_DEBUG("diff_attr end - errstat:%d", opts->err_stat); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(" - errstat:%d", opts->err_stat); return nfound_total; } diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c index 8a6eeeb..cea20a8 100644 --- a/tools/lib/h5diff_dset.c +++ b/tools/lib/h5diff_dset.c @@ -27,21 +27,17 @@ * Return: Number of differences found *------------------------------------------------------------------------- */ -hsize_t diff_dataset(hid_t file1_id, - hid_t file2_id, - const char *obj1_name, - const char *obj2_name, - diff_opt_t *opts) +hsize_t diff_dataset(hid_t file1_id, hid_t file2_id, const char *obj1_name, const char *obj2_name, diff_opt_t *opts) { int status = -1; - hid_t did1 = -1; - hid_t did2 = -1; - hid_t dcpl1 = -1; - hid_t dcpl2 = -1; + hid_t did1 = H5I_INVALID_HID; + hid_t did2 = H5I_INVALID_HID; + hid_t dcpl1 = H5I_INVALID_HID; + hid_t dcpl2 = H5I_INVALID_HID; hsize_t nfound = 0; diff_err_t ret_value = opts->err_stat; - H5TOOLS_DEBUG("diff_dataset start - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); /*------------------------------------------------------------------------- * open the handles *------------------------------------------------------------------------- @@ -92,8 +88,7 @@ done: /* enable error reporting */ } H5E_END_TRY; - H5TOOLS_DEBUG("diff_dataset finish:%d - errstat:%d", nfound, opts->err_stat); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); return nfound; } @@ -148,11 +143,7 @@ done: * *------------------------------------------------------------------------- */ -hsize_t diff_datasetid(hid_t did1, - hid_t did2, - const char *obj1_name, - const char *obj2_name, - diff_opt_t *opts) +hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char *obj2_name, diff_opt_t *opts) { hid_t sid1 = H5I_INVALID_HID; hid_t sid2 = H5I_INVALID_HID; @@ -197,7 +188,7 @@ hsize_t diff_datasetid(hid_t did1, unsigned int vl_data2 = 0; /*contains VL datatypes */ diff_err_t ret_value = opts->err_stat; - H5TOOLS_DEBUG("diff_datasetid start - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); /* Get the dataspace handle */ if((sid1 = H5Dget_space(did1)) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dget_space failed"); @@ -606,8 +597,7 @@ done: /* enable error reporting */ } H5E_END_TRY; - H5TOOLS_DEBUG("diff_datasetid return:%d with nfound:%d", ret_value, nfound); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(": %d with nfound:%d", ret_value, nfound); return nfound; } @@ -623,18 +613,10 @@ done: *------------------------------------------------------------------------- */ -int diff_can_type(hid_t f_tid1, /* file data type */ - hid_t f_tid2, /* file data type */ - int rank1, - int rank2, - hsize_t *dims1, - hsize_t *dims2, - hsize_t *maxdim1, - hsize_t *maxdim2, - const char *obj1_name, - const char *obj2_name, - diff_opt_t *opts, - int is_compound) +int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, + hsize_t *dims1, hsize_t *dims2, hsize_t *maxdim1, hsize_t *maxdim2, + const char *obj1_name, const char *obj2_name, + diff_opt_t *opts, int is_compound) { H5T_class_t tclass1; H5T_class_t tclass2; @@ -643,7 +625,7 @@ int diff_can_type(hid_t f_tid1, /* file data type */ int i; int ret_value = 1; - H5TOOLS_DEBUG("diff_can_type start"); + H5TOOLS_START_DEBUG(""); /*------------------------------------------------------------------------- * check for the same class *------------------------------------------------------------------------- @@ -814,8 +796,8 @@ int diff_can_type(hid_t f_tid1, /* file data type */ int nmembs1; int nmembs2; int j; - hid_t memb_type1 = -1; - hid_t memb_type2 = -1; + hid_t memb_type1 = H5I_INVALID_HID; + hid_t memb_type2 = H5I_INVALID_HID; H5TOOLS_DEBUG("diff_can_type end - H5T_COMPOUND"); nmembs1 = H5Tget_nmembers(f_tid1); @@ -851,8 +833,7 @@ done: if (ret_value < 0) opts->err_stat = H5DIFF_ERR; - H5TOOLS_DEBUG("diff_can_type end - %d", ret_value); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(" - %d", ret_value); return ret_value; } diff --git a/tools/lib/h5diff_util.c b/tools/lib/h5diff_util.c index 8da995a..59b11d6 100644 --- a/tools/lib/h5diff_util.c +++ b/tools/lib/h5diff_util.c @@ -341,6 +341,7 @@ herr_t match_up_memsize (hid_t f_tid1_id, hid_t f_tid2_id, { herr_t ret_value = SUCCEED; + H5TOOLS_START_DEBUG(""); if((*m_size1) != (*m_size2)) { if((*m_size1) < (*m_size2)) { H5Tclose(*m_tid1); @@ -363,7 +364,7 @@ herr_t match_up_memsize (hid_t f_tid1_id, hid_t f_tid2_id, H5TOOLS_GOTO_ERROR(FAIL, "native type sizes do not compare"); done: - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c index 84b8eb8..47f6e3f 100644 --- a/tools/lib/h5tools.c +++ b/tools/lib/h5tools.c @@ -22,13 +22,19 @@ #include "h5tools_utils.h" #include "H5private.h" +#ifdef H5_TOOLS_DEBUG +/* global debug variables */ +int H5tools_INDENT_g = 0; +#endif + + /* global variables */ hid_t H5tools_ERR_STACK_g = 0; -hid_t H5tools_ERR_CLS_g = -1; -hid_t H5E_tools_g = -1; -hid_t H5E_tools_min_id_g = -1; -hid_t H5E_tools_min_info_id_g = -1; -hid_t H5E_tools_min_dbg_id_g = -1; +hid_t H5tools_ERR_CLS_g = H5I_INVALID_HID; +hid_t H5E_tools_g = H5I_INVALID_HID; +hid_t H5E_tools_min_id_g = H5I_INVALID_HID; +hid_t H5E_tools_min_info_id_g = H5I_INVALID_HID; +hid_t H5E_tools_min_dbg_id_g = H5I_INVALID_HID; int compound_data; FILE *rawattrstream = NULL; /* should initialize to stdout but gcc moans about it */ FILE *rawdatastream = NULL; /* should initialize to stdout but gcc moans about it */ @@ -430,7 +436,7 @@ h5tools_set_error_file(const char *fname, int is_bin) static hid_t h5tools_get_fapl(hid_t fapl, const char *driver, unsigned *drivernum) { - hid_t new_fapl = -1; /* Copy of file access property list passed in, or new property list */ + hid_t new_fapl = H5I_INVALID_HID; /* Copy of file access property list passed in, or new property list */ herr_t ret_value = SUCCEED; /* Make a copy of the FAPL, for the file open call to use, eventually */ @@ -504,7 +510,7 @@ h5tools_get_fapl(hid_t fapl, const char *driver, unsigned *drivernum) done: if((new_fapl != H5P_DEFAULT) && (ret_value < 0)) { H5Pclose(new_fapl); - new_fapl = -1; + new_fapl = H5I_INVALID_HID; } return(new_fapl); @@ -741,7 +747,7 @@ h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, if (!ctx->need_prefix) return; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); HDmemset(&prefix, 0, sizeof(h5tools_str_t)); HDmemset(&str, 0, sizeof(h5tools_str_t)); @@ -809,7 +815,7 @@ h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, h5tools_str_close(&prefix); h5tools_str_close(&str); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); } /*------------------------------------------------------------------------- @@ -934,7 +940,7 @@ h5tools_render_element(FILE *stream, const h5tool_format_t *info, if (stream == NULL) return dimension_break; - H5TOOLS_DEBUG("enter need_prefix=%d", ctx->need_prefix); + H5TOOLS_START_DEBUG(" need_prefix=%d", ctx->need_prefix); H5TOOLS_DEBUG("elmt_counter=%ld - local_elmt_counter=%ld", elmt_counter, local_elmt_counter); s = h5tools_str_fmt(buffer, (size_t)0, "%s"); @@ -1061,7 +1067,7 @@ h5tools_render_element(FILE *stream, const h5tool_format_t *info, ctx->prev_multiline = multiline; - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return dimension_break; } @@ -1102,7 +1108,7 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, int secnum; /* section sequence number */ int multiline; /* datum was multiline */ - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); H5TOOLS_DEBUG("elmt_counter=%ld - local_elmt_counter=%ld", elmt_counter, local_elmt_counter); s = h5tools_str_fmt(buffer, (size_t)0, "%s"); @@ -1212,7 +1218,7 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, ctx->prev_multiline = multiline; - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return dimension_break; } @@ -1231,7 +1237,7 @@ init_acc_pos(h5tools_context_t *ctx, hsize_t *dims) int i; unsigned j; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); if(ctx->ndims > 0) { ctx->acc[ctx->ndims - 1] = 1; @@ -1243,7 +1249,7 @@ init_acc_pos(h5tools_context_t *ctx, hsize_t *dims) ctx->pos[j] = 0; } - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); } /*------------------------------------------------------------------------- @@ -1265,7 +1271,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t hbool_t past_catch = FALSE; int ret_value = 0; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); if((size = H5Tget_size(tid)) == 0) H5TOOLS_THROW((-1), "H5Tget_size failed"); @@ -1343,7 +1349,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t mem = ((unsigned char*)_mem) + block_index * size; for (j = 0; j < nmembs; j++) { - hid_t memb = -1; + hid_t memb = H5I_INVALID_HID; size_t offset; offset = H5Tget_member_offset(tid, j); @@ -1363,7 +1369,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t { int k, ndims; hsize_t dims[H5S_MAX_RANK], temp_nelmts, nelmts; - hid_t memb = -1; + hid_t memb = H5I_INVALID_HID; H5TOOLS_DEBUG("H5T_ARRAY"); /* get the array's base datatype for each element */ @@ -1397,7 +1403,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t case H5T_VLEN: { hsize_t nelmts; - hid_t memb = -1; + hid_t memb = H5I_INVALID_HID; H5TOOLS_DEBUG("H5T_VLEN"); /* get the VL sequences's base datatype for each element */ @@ -1480,10 +1486,8 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t break; } /* end switch */ -done: - CATCH - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1509,13 +1513,14 @@ render_bin_output_region_data_blocks(hid_t region_id, FILE *stream, hsize_t total_size[H5S_MAX_RANK]; unsigned jndx; size_t type_size; - hid_t mem_space = -1; + hid_t mem_space = H5I_INVALID_HID; void *region_buf = NULL; hbool_t past_catch = FALSE; hsize_t blkndx; - hid_t sid1 = -1; + hid_t sid1 = H5I_INVALID_HID; int ret_value = -1; + H5TOOLS_START_DEBUG(""); /* Get the dataspace of the dataset */ if((sid1 = H5Dget_space(region_id)) < 0) H5TOOLS_THROW((-1), "H5Dget_space failed"); @@ -1582,7 +1587,7 @@ CATCH if(H5Sclose(sid1) < 0) H5TOOLS_ERROR((-1), "H5Sclose failed"); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1606,11 +1611,12 @@ render_bin_output_region_blocks(hid_t region_space, hid_t region_id, hsize_t *ptdata = NULL; int sndims; unsigned ndims; - hid_t dtype = -1; - hid_t type_id = -1; + hid_t dtype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; hbool_t past_catch = FALSE; hbool_t ret_value = TRUE; + H5TOOLS_START_DEBUG(""); if((snblocks = H5Sget_select_hyper_nblocks(region_space)) <= 0) H5TOOLS_THROW(FALSE, "H5Sget_select_hyper_nblocks failed"); nblocks = (hsize_t)snblocks; @@ -1646,7 +1652,7 @@ done: H5_LEAVE(TRUE) CATCH - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1674,10 +1680,11 @@ render_bin_output_region_data_points(hid_t region_space, hid_t region_id, { hsize_t *dims1 = NULL; size_t type_size; - hid_t mem_space = -1; + hid_t mem_space = H5I_INVALID_HID; void *region_buf = NULL; int ret_value = 0; + H5TOOLS_START_DEBUG(""); if((type_size = H5Tget_size(type_id)) == 0) H5TOOLS_GOTO_ERROR((-1), "H5Tget_size failed"); @@ -1707,7 +1714,7 @@ done: if(H5Sclose(mem_space) < 0) H5TOOLS_ERROR((-1), "H5Sclose failed"); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1729,11 +1736,12 @@ render_bin_output_region_points(hid_t region_space, hid_t region_id, hsize_t npoints; int sndims; unsigned ndims; - hid_t dtype = -1; - hid_t type_id = -1; + hid_t dtype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; hbool_t past_catch = FALSE; hbool_t ret_value = TRUE; + H5TOOLS_START_DEBUG(""); if((snpoints = H5Sget_select_elem_npoints(region_space)) <= 0) H5TOOLS_THROW(FALSE, "H5Sget_select_elem_npoints failed"); npoints = (hsize_t)snpoints; @@ -1760,7 +1768,7 @@ done: H5_LEAVE(ret_value) CATCH - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1806,21 +1814,27 @@ hbool_t h5tools_is_obj_same(hid_t loc_id1, const char *name1, hid_t loc_id2, const char *name2) { - H5O_info_t oinfo1, oinfo2; + H5O_info2_t oinfo1, oinfo2; hbool_t ret_val = FALSE; if ( name1 && HDstrcmp(name1, ".")) - H5Oget_info_by_name2(loc_id1, name1, &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); + H5Oget_info_by_name3(loc_id1, name1, &oinfo1, H5O_INFO_BASIC, H5P_DEFAULT); else - H5Oget_info2(loc_id1, &oinfo1, H5O_INFO_BASIC); + H5Oget_info3(loc_id1, &oinfo1, H5O_INFO_BASIC); if ( name2 && HDstrcmp(name2, ".")) - H5Oget_info_by_name2(loc_id2, name2, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); + H5Oget_info_by_name3(loc_id2, name2, &oinfo2, H5O_INFO_BASIC, H5P_DEFAULT); else - H5Oget_info2(loc_id2, &oinfo2, H5O_INFO_BASIC); + H5Oget_info3(loc_id2, &oinfo2, H5O_INFO_BASIC); - if (oinfo1.fileno == oinfo2.fileno && oinfo1.addr==oinfo2.addr) - ret_val = TRUE; + if (oinfo1.fileno == oinfo2.fileno) { + int token_cmp_val; + + H5Otoken_cmp(loc_id1, &oinfo1.token, &oinfo2.token, &token_cmp_val); + + if(!token_cmp_val) + ret_val = TRUE; + } return ret_val; } diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c index 93f7550..3cca910 100644 --- a/tools/lib/h5tools_dump.c +++ b/tools/lib/h5tools_dump.c @@ -273,7 +273,7 @@ h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t contai * to the ctx->size_last_dim. */ int ret_value = 0; - H5TOOLS_DEBUG("enter file=%p", (void*)stream); + H5TOOLS_START_DEBUG(" file=%p", (void*)stream); H5TOOLS_DEBUG("rawdata file=%p", (void*)rawdatastream); /* binary dump */ if (bin_output && (rawdatastream != NULL)) { @@ -460,8 +460,7 @@ done: CATCH - H5TOOLS_ENDDEBUG("exit"); - + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -484,8 +483,7 @@ CATCH *------------------------------------------------------------------------- */ static int -h5tools_print_region_data_blocks(hid_t region_id, - FILE *stream, const h5tool_format_t *info, h5tools_context_t *cur_ctx, +h5tools_print_region_data_blocks(hid_t region_id, FILE *stream, const h5tool_format_t *info, h5tools_context_t *cur_ctx, h5tools_str_t *buffer, /* string into which to render */ size_t ncols, unsigned ndims, hid_t type_id, hsize_t nblocks, hsize_t *ptdata) { @@ -504,8 +502,8 @@ h5tools_print_region_data_blocks(hid_t region_id, unsigned jndx; hbool_t past_catch = FALSE; size_t type_size; - hid_t mem_space = -1; - hid_t sid1 = -1; + hid_t mem_space = H5I_INVALID_HID; + hid_t sid1 = H5I_INVALID_HID; h5tools_context_t ctx; void *region_buf = NULL; int ret_value = 0; @@ -517,7 +515,7 @@ h5tools_print_region_data_blocks(hid_t region_id, HDmemset(&ctx, 0, sizeof(ctx)); - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); if((type_size = H5Tget_size(type_id)) == 0) H5TOOLS_THROW(FAIL, "H5Tget_size failed"); @@ -635,7 +633,7 @@ done: if(H5Sclose(sid1) < 0) H5TOOLS_ERROR(FAIL, "H5Sclose failed"); CATCH - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -690,6 +688,7 @@ h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id, HDassert(ctx); HDassert(buffer); + H5TOOLS_START_DEBUG(""); outputformat = *info; outputformat.idx_fmt = ""; outputformat.idx_n_fmt = ""; @@ -853,7 +852,7 @@ done: CATCH - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -903,7 +902,7 @@ h5tools_print_region_data_points(hid_t region_space, hid_t region_id, HDassert(ptdata); HDassert(ndims > 0); - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); HDmemset(&ctx, 0, sizeof(ctx)); /* Allocate space for the dimension array */ @@ -991,7 +990,7 @@ CATCH if(H5Sclose(mem_space) < 0) H5TOOLS_ERROR((-1), "H5Sclose failed"); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1043,6 +1042,7 @@ h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, HDassert(ctx); HDassert(buffer); + H5TOOLS_START_DEBUG(""); outputformat = *info; outputformat.idx_fmt = ""; outputformat.idx_n_fmt = ""; @@ -1202,7 +1202,7 @@ done: H5_LEAVE(dimension_break) CATCH - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1241,8 +1241,7 @@ CATCH */ static herr_t h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, - hid_t dset, hid_t p_type, - hid_t f_space, hsize_t hyperslab_count, + hid_t dset, hid_t p_type, hid_t f_space, hsize_t hyperslab_count, hsize_t *temp_start, /* start inside offset count loop */ hsize_t *temp_count, /* count inside offset count loop */ hsize_t *temp_block, /* block size used in loop */ @@ -1271,6 +1270,7 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c unsigned int vl_data = 0; /* contains VL datatypes */ herr_t ret_value = SUCCEED; + H5TOOLS_START_DEBUG(""); if ((size_t) ctx->ndims > NELMTS(sm_size)) H5TOOLS_THROW(FAIL, "ndims and sm_size comparision failed"); @@ -1391,7 +1391,7 @@ CATCH if(sm_buf) HDfree(sm_buf); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1568,8 +1568,7 @@ h5tools_display_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools *------------------------------------------------------------------------- */ static herr_t -h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, - hid_t dset, hid_t p_type) +h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t dset, hid_t p_type) { int sndims; hid_t f_space = H5I_INVALID_HID; /* file data space */ @@ -1578,6 +1577,7 @@ h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_co hbool_t past_catch = FALSE; herr_t ret_value = SUCCEED; + H5TOOLS_START_DEBUG(""); if((f_space = H5Dget_space(dset)) < 0) H5TOOLS_THROW(FAIL, "H5Dget_space failed"); @@ -1603,7 +1603,7 @@ CATCH if(f_space >= 0 && H5Sclose(f_space) < 0) H5TOOLS_THROW(FAIL, "H5Sclose failed"); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1656,7 +1656,7 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont unsigned int vl_data = 0; /* contains VL datatypes */ int ret_value = 0; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); if (H5I_INVALID_HID == (f_space = H5Dget_space(dset))) H5TOOLS_GOTO_ERROR((-1), "H5Dget_space failed"); @@ -1796,7 +1796,7 @@ done: if(f_space >= 0 && H5Sclose(f_space) < 0) H5TOOLS_ERROR((-1), "H5Sclose failed"); CATCH - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1827,7 +1827,7 @@ h5tools_dump_simple_mem(FILE *stream, const h5tool_format_t *info, h5tools_conte /* VL data special information */ unsigned int vl_data = 0; /* contains VL datatypes */ - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); if (H5I_INVALID_HID == (f_space = H5Aget_space(attr_id))) H5TOOLS_GOTO_ERROR((-1), "H5Dget_space failed"); @@ -1890,7 +1890,7 @@ done: if(f_space >= 0 && H5Sclose(f_space) < 0) H5TOOLS_ERROR((-1), "H5Sclose failed"); CATCH - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1922,6 +1922,7 @@ h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t * h5tool_format_t info_dflt; int ret_value = 0; + H5TOOLS_START_DEBUG(""); /* Use default values */ if (!stream) stream = rawoutstream; @@ -1973,7 +1974,7 @@ done: if (f_space > 0) H5Sclose(f_space); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -1997,6 +1998,7 @@ h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *c h5tool_format_t info_dflt; int ret_value = 0; + H5TOOLS_START_DEBUG(""); /* Use default values */ if (!stream) stream = rawoutstream; @@ -2042,7 +2044,7 @@ done: if (f_space > 0) H5Sclose(f_space); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -2062,10 +2064,10 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_context_t *ctx, hid_t type, int object_search) { char *mname; - hid_t mtype = -1; - hid_t str_type = -1; - hid_t super = -1; - hid_t tmp_type = -1; + hid_t mtype = H5I_INVALID_HID; + hid_t str_type = H5I_INVALID_HID; + hid_t super = H5I_INVALID_HID; + hid_t tmp_type = H5I_INVALID_HID; int snmembers; int sndims; unsigned nmembers; @@ -2085,18 +2087,24 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ const char *order_s = NULL; /* byte order string */ int ret_value = 0; + H5TOOLS_START_DEBUG(""); if((type_class = H5Tget_class(type)) < 0) H5TOOLS_THROW((-1), "H5Tget_class failed"); if (object_search && H5Tcommitted(type) > 0) { - H5O_info_t oinfo; - obj_t *obj = NULL; /* Found object */ + H5O_info2_t oinfo; + obj_t *obj = NULL; /* Found object */ - H5Oget_info2(type, &oinfo, H5O_INFO_BASIC); - obj = search_obj(h5dump_type_table, oinfo.addr); + H5Oget_info3(type, &oinfo, H5O_INFO_BASIC); + obj = search_obj(h5dump_type_table, &oinfo.token); if(obj) { - if(!obj->recorded) - h5tools_str_append(buffer,"\"/#"H5_PRINTF_HADDR_FMT"\"", obj->objno); + if(!obj->recorded) { + char *obj_addr_str = NULL; + + H5Otoken_to_str(type, &oinfo.token, &obj_addr_str); + h5tools_str_append(buffer,"\"/#%s\"", obj_addr_str); + H5free_memory(obj_addr_str); + } else h5tools_str_append(buffer, "\"%s\"", obj->objname); } @@ -2629,10 +2637,8 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ break; } -done: - CATCH - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -2658,6 +2664,7 @@ h5tools_print_dataspace(h5tools_str_t *buffer, hid_t space) int i; int ret_value = 0; + H5TOOLS_START_DEBUG(""); if((ndims = H5Sget_simple_extent_dims(space, size, maxsize)) < 0) H5TOOLS_THROW((-1), "H5Sget_simple_extent_dims failed"); @@ -2709,7 +2716,7 @@ h5tools_print_dataspace(h5tools_str_t *buffer, hid_t space) } /* end switch */ CATCH - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -2734,8 +2741,8 @@ h5tools_print_enum(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *i unsigned i; unsigned nmembs = 0; /*number of members */ int snmembs; - hid_t super = -1; /*enum base integer type */ - hid_t native = -1; /*native integer datatype */ + hid_t super = H5I_INVALID_HID; /*enum base integer type */ + hid_t native = H5I_INVALID_HID; /*native integer datatype */ H5T_sign_t sign_type; /*sign of value type */ size_t type_size; /*value type size */ size_t dst_size; /*destination value type size */ @@ -2744,6 +2751,7 @@ h5tools_print_enum(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *i hbool_t past_catch = FALSE; int ret_value = 0; + H5TOOLS_START_DEBUG(""); if (info->line_ncols > 0) ncols = info->line_ncols; @@ -2855,7 +2863,7 @@ CATCH if(0 == nmembs) h5tools_str_append(buffer, "\n<empty>"); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return ret_value; } @@ -3074,7 +3082,7 @@ h5tools_print_fill_value(h5tools_str_t *buffer/*in,out*/, const h5tool_format_t h5tools_context_t *ctx/*in,out*/, hid_t dcpl, hid_t type_id, hid_t obj_id) { size_t size; - hid_t n_type = -1; + hid_t n_type = H5I_INVALID_HID; void *buf = NULL; n_type = H5Tget_native_type(type_id, H5T_DIR_DEFAULT); @@ -3309,7 +3317,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, if (vmaps) { size_t next; - ssize_t ssize_out; + ssize_t H5_ATTR_NDEBUG_UNUSED ssize_out; ctx->indent_level++; for (next = 0; next < (unsigned) vmaps; next++) { @@ -3776,8 +3784,8 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, h5tools_contex error_msg("unable to open attribute \"%s\"\n", attr_name); } else { - hid_t type = -1; - hid_t space = -1; + hid_t type = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; ctx->indent_level++; @@ -3988,7 +3996,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t * h5tool_format_t outputformat; H5R_ref_t *ref_buf = NULL; - H5TOOLS_DEBUG("enter file=%p", (void*)stream); + H5TOOLS_START_DEBUG(" file=%p", (void*)stream); H5TOOLS_DEBUG("rawdata file=%p", (void*)rawdatastream); /* setup */ HDmemset(&buffer, 0, sizeof(h5tools_str_t)); @@ -4052,7 +4060,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t * init_acc_pos(&datactx, total_size); datactx.need_prefix = TRUE; - if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), ndims))) { + if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) { if(obj_data) { if(H5Dread(obj_id, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, ref_buf) < 0) { HDfree(ref_buf); @@ -4067,7 +4075,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t * H5TOOLS_GOTO_DONE_NO_RET(); } } - for(i = 0; i < ndims; i++, datactx.cur_elmt++, elmt_counter++) { + for(i = 0; i < (size_t)ndims; i++, datactx.cur_elmt++, elmt_counter++) { H5O_type_t obj_type = -1; /* Object type */ H5R_type_t ref_type; /* Reference type */ @@ -4362,6 +4370,6 @@ done: } h5tools_str_close(&buffer); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); } diff --git a/tools/lib/h5tools_error.h b/tools/lib/h5tools_error.h index 784b86a..4e2e935 100644 --- a/tools/lib/h5tools_error.h +++ b/tools/lib/h5tools_error.h @@ -21,10 +21,9 @@ #include "H5Eprivate.h" /* Error handling */ /* tools-HDF5 Error variables */ +H5TOOLS_DLLVAR int H5tools_INDENT_g; H5TOOLS_DLLVAR hid_t H5tools_ERR_STACK_g; -H5TOOLS_DLLVAR hid_t H5tools_DBG_ERR_STACK_g; H5TOOLS_DLLVAR hid_t H5tools_ERR_CLS_g; -H5TOOLS_DLLVAR hid_t H5tools_DBG_ERR_CLS_g; H5TOOLS_DLLVAR hid_t H5E_tools_g; H5TOOLS_DLLVAR hid_t H5E_tools_min_id_g; H5TOOLS_DLLVAR hid_t H5E_tools_min_info_id_g; @@ -53,9 +52,6 @@ do { if ((H5tools_ERR_STACK_g = H5Ecreate_stack()) < 0) \ HDfprintf(stderr, "Failed to create HDF5 tools error stack\n"); \ \ - /* Create new HDF5 error stack for debugging, if tools debugging is enabled */ \ - H5TOOLS_CREATE_DEBUG_STACK(); \ - \ /* Register errors from the HDF5 tools as a new error class */ \ if ((H5tools_ERR_CLS_g = H5Eregister_class("H5tools", "HDF5:tools", lib_str)) < 0) \ HDfprintf(stderr, "Failed to register HDF5 tools error class\n"); \ @@ -96,9 +92,6 @@ do { if (H5Eunregister_class(H5tools_ERR_CLS_g) < 0) \ HDfprintf(stderr, "Failed to unregister the HDF5 tools error class\n"); \ \ - /* Close the tools debugging error stack, if it was created */ \ - H5TOOLS_CLOSE_DEBUG_STACK(); \ - \ /* Close the tools error stack */ \ if (H5Eclose_stack(H5tools_ERR_STACK_g) < 0) \ HDfprintf(stderr, "Failed to close HDF5 tools error stack\n"); \ @@ -174,47 +167,35 @@ do { #ifdef H5_TOOLS_DEBUG -#define H5TOOLS_CREATE_DEBUG_STACK() \ +#define H5TOOLS_START_DEBUG(...) \ do { \ - /* Create new HDF5 error stack for debugging */ \ - if ((H5tools_DBG_ERR_STACK_g = H5Ecreate_stack()) < 0) \ - HDfprintf(stderr, "Failed to create HDF5 tools debugging error stack\n"); \ - \ - /* Register debugging output from the HDF5 tools as a new error class */ \ - if ((H5tools_DBG_ERR_CLS_g = H5Eregister_class("H5tools-debug", "HDF5:tools", lib_str)) < 0) \ - HDfprintf(stderr, "Failed to register HDF5 tools debugging error class\n"); \ -} while(0) - -#define H5TOOLS_CLOSE_DEBUG_STACK() \ -do { \ - /* Unregister the HDF5 tools debugging error class */ \ - if (H5Eunregister_class(H5tools_DBG_ERR_CLS_g) < 0) \ - HDfprintf(stderr, "Failed to unregister the HDF5 tools debugging error class\n"); \ - \ - /* Close the tools debugging error stack */ \ - if (H5Eclose_stack(H5tools_DBG_ERR_STACK_g) < 0) \ - HDfprintf(stderr, "Failed to close HDF5 tools debugging error stack\n"); \ + H5tools_INDENT_g += 2; \ + HDfprintf(stderr, "%*sENTER %s:%d in %s()...", H5tools_INDENT_g, "", __FILE__, __LINE__, FUNC); \ + HDfprintf(stderr, __VA_ARGS__); \ + HDfprintf(stderr, "\n"); \ + HDfflush(stderr); \ } while(0) -#define H5TOOLS_DEBUG(...) \ -do { \ - H5TOOLS_PUSH_ERROR(H5tools_DBG_ERR_STACK_g, H5tools_DBG_ERR_CLS_g, H5E_tools_g, H5E_tools_min_dbg_id_g, __VA_ARGS__); \ +#define H5TOOLS_DEBUG(...) \ +do { \ + HDfprintf(stderr, "%*s %s:%d in %s()...", H5tools_INDENT_g, "", __FILE__, __LINE__, FUNC); \ + HDfprintf(stderr, __VA_ARGS__); \ + HDfprintf(stderr, "\n"); \ + HDfflush(stderr); \ } while(0) -#define H5TOOLS_ENDDEBUG(...) \ -do { \ - H5TOOLS_PUSH_ERROR(H5tools_DBG_ERR_STACK_g, H5tools_DBG_ERR_CLS_g, H5E_tools_g, H5E_tools_min_dbg_id_g, __VA_ARGS__); \ - H5Eprint2(H5tools_DBG_ERR_STACK_g, stderr); \ +#define H5TOOLS_ENDDEBUG(...) \ +do { \ + HDfprintf(stderr, "%*sEXIT %s:%d in %s()...", H5tools_INDENT_g, "", __FILE__, __LINE__, FUNC); \ + HDfprintf(stderr, __VA_ARGS__); \ + HDfprintf(stderr, "\n"); \ + H5tools_INDENT_g -= 2; \ + HDfflush(stderr); \ } while(0) #else -#define H5TOOLS_CREATE_DEBUG_STACK() \ -do { \ - ; \ -} while(0) - -#define H5TOOLS_CLOSE_DEBUG_STACK() \ +#define H5TOOLS_START_DEBUG(...) \ do { \ ; \ } while(0) diff --git a/tools/lib/h5tools_ref.c b/tools/lib/h5tools_ref.c index e98a8e2..0e1fa03 100644 --- a/tools/lib/h5tools_ref.c +++ b/tools/lib/h5tools_ref.c @@ -17,6 +17,7 @@ #include "h5tools.h" #include "h5tools_utils.h" #include "h5trav.h" +#include "H5VLnative_private.h" /* @@ -34,14 +35,14 @@ */ typedef struct { - haddr_t objno; /* Object ID (i.e. address) */ - char *path; /* Object path */ + H5O_token_t obj_token; /* Object token */ + char *path; /* Object path */ } ref_path_node_t; static H5SL_t *ref_path_table = NULL; /* the "table" (implemented with a skip list) */ static hid_t thefile = (-1); -static int ref_path_table_put(const char *, haddr_t objno); +static int ref_path_table_put(const char *, const H5O_token_t *token); /*------------------------------------------------------------------------- * Function: free_ref_path_info @@ -80,19 +81,47 @@ free_ref_path_info(void *item, void H5_ATTR_UNUSED *key, void H5_ATTR_UNUSED *op *------------------------------------------------------------------------- */ static herr_t -init_ref_path_cb(const char *obj_name, const H5O_info_t *oinfo, +init_ref_path_cb(const char *obj_name, const H5O_info2_t *oinfo, const char *already_seen, void H5_ATTR_UNUSED *_udata) { /* Check if the object is already in the path table */ if(NULL == already_seen) { /* Insert the object into the path table */ - ref_path_table_put(obj_name, oinfo->addr); + ref_path_table_put(obj_name, &oinfo->token); } /* end if */ return 0; } /*------------------------------------------------------------------------- + * Function: ref_path_table_cmp + * + * Purpose: Skip list key comparison function which compares two + * H5O_token_t objects. + * + * Return: Negative (if token2 is greater than token1) + * 0 (if tokens are equal) + * or + * Positive (if token1 is greater than token2) + * + *------------------------------------------------------------------------- + */ +static int +ref_path_table_cmp(const void *key1, const void *key2) +{ + const H5O_token_t *token1 = (const H5O_token_t *)key1; + const H5O_token_t *token2 = (const H5O_token_t *)key2; + int cmp_value = 0; + + if(thefile > 0) + H5Otoken_cmp(thefile, token1, token2, &cmp_value); + else + cmp_value = HDmemcmp(token1, token2, sizeof(H5O_token_t)); + + return cmp_value; +} + +/*------------------------------------------------------------------------- * Function: init_ref_path_table * * Purpose: Initalize the reference path table @@ -109,7 +138,7 @@ init_ref_path_table(void) /* Sanity check */ if(thefile > 0) { /* Create skip list to store reference path information */ - if((ref_path_table = H5SL_create(H5SL_TYPE_HADDR, NULL))==NULL) + if((ref_path_table = H5SL_create(H5SL_TYPE_GENERIC, ref_path_table_cmp)) == NULL) return (-1); /* Iterate over objects in this file */ @@ -153,8 +182,10 @@ term_ref_path_table(void) * Purpose: Looks up a table entry given a path name. * Used during construction of the table. * - * Return: The table entre (pte) or NULL if not in the - * table. + * Return: Negative on failure, Non-negative on success. The object + * token for the table entry is returned through the token + * parameter if the table entry is found by the given path + * name. * * Programmer: REMcG * @@ -162,33 +193,35 @@ term_ref_path_table(void) * *------------------------------------------------------------------------- */ -haddr_t -ref_path_table_lookup(const char *thepath) +int +ref_path_table_lookup(const char *thepath, H5O_token_t *token) { - H5O_info_t oi; + H5O_info2_t oi; if((thepath == NULL) || (HDstrlen(thepath) == 0)) - return HADDR_UNDEF; + return -1; /* Allow lookups on the root group, even though it doesn't have any link info */ if(HDstrcmp(thepath, "/")) { - H5L_info_t li; + H5L_info2_t li; /* Check for external link first, so we don't return the OID of an object in another file */ - if(H5Lget_info(thefile, thepath, &li, H5P_DEFAULT) < 0) - return HADDR_UNDEF; + if(H5Lget_info2(thefile, thepath, &li, H5P_DEFAULT) < 0) + return -1; /* UD links can't be followed, so they always "dangle" like soft links. */ if(li.type >= H5L_TYPE_UD_MIN) - return HADDR_UNDEF; + return -1; } /* end if */ /* Get the object info now */ /* (returns failure for dangling soft links) */ - if(H5Oget_info_by_name2(thefile, thepath, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) - return HADDR_UNDEF; + if(H5Oget_info_by_name3(thefile, thepath, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + return -1; - /* Return OID */ - return(oi.addr); + /* Return object token through parameter */ + HDmemcpy(token, &oi.token, sizeof(H5O_token_t)); + + return 0; } /*------------------------------------------------------------------------- @@ -211,7 +244,7 @@ ref_path_table_lookup(const char *thepath) *------------------------------------------------------------------------- */ static int -ref_path_table_put(const char *path, haddr_t objno) +ref_path_table_put(const char *path, const H5O_token_t *token) { ref_path_node_t *new_node; @@ -219,10 +252,10 @@ ref_path_table_put(const char *path, haddr_t objno) if((new_node = (ref_path_node_t *)HDmalloc(sizeof(ref_path_node_t))) == NULL) return(-1); - new_node->objno = objno; + HDmemcpy(&new_node->obj_token, token, sizeof(H5O_token_t)); new_node->path = HDstrdup(path); - return(H5SL_insert(ref_path_table, new_node, &(new_node->objno))); + return(H5SL_insert(ref_path_table, new_node, &(new_node->obj_token))); } else return (-1); @@ -239,46 +272,50 @@ int get_next_xid(void) { /* * This counter is used to create fake object ID's - * The idea is to set it to the largest possible offest, which + * The idea is to set it to the largest possible offset, which * minimizes the chance of collision with a real object id. * */ haddr_t fake_xid = HADDR_MAX; -haddr_t -get_fake_xid (void) { - return (fake_xid--); + +void +get_fake_token(H5O_token_t *token) { + if(thefile > 0) { + /* TODO: potential for this to be called with non-native connector objects */ + if(H5VLnative_addr_to_token(thefile, fake_xid, token) < 0) + *token = H5O_TOKEN_UNDEF; + fake_xid--; + } + else + *token = H5O_TOKEN_UNDEF; } /* - * for an object that does not have an object id (e.g., soft link), - * create a table entry with a fake object id as the key. + * for an object that does not have an object token (e.g., soft link), + * create a table entry with a fake object token as the key. * * Assumes 'path' is for an object that is not in the table. * */ -haddr_t -ref_path_table_gen_fake(const char *path) +void +ref_path_table_gen_fake(const char *path, H5O_token_t *token) { - haddr_t fake_objno; - - /* Generate fake ID for string */ - fake_objno = get_fake_xid(); + /* Generate fake object token for string */ + get_fake_token(token); /* Create ref path table, if it hasn't already been created */ if(ref_path_table == NULL) init_ref_path_table(); /* Insert "fake" object into table */ - ref_path_table_put(path, fake_objno); - - return(fake_objno); + ref_path_table_put(path, token); } /*------------------------------------------------------------------------- * Function: lookup_ref_path * - * Purpose: Lookup the path to the object with refernce 'ref'. + * Purpose: Lookup the path to the object with the reference 'refbuf'. * * Return: Return a path to the object, or NULL if not found. * @@ -289,19 +326,48 @@ ref_path_table_gen_fake(const char *path) *------------------------------------------------------------------------- */ const char * -lookup_ref_path(haddr_t ref) +lookup_ref_path(H5R_ref_t refbuf) { + H5O_info2_t oinfo; + H5R_type_t ref_type; + hid_t ref_object; ref_path_node_t *node; /* Be safer for h5ls */ if(thefile < 0) return(NULL); + /* Retrieve reference type */ + if(H5R_BADTYPE == (ref_type = H5Rget_type(&refbuf))) + return(NULL); + + /* Open the referenced object */ + switch (ref_type) { + case H5R_OBJECT1: + case H5R_OBJECT2: + if((ref_object = H5Ropen_object(&refbuf, H5P_DEFAULT, H5P_DEFAULT)) < 0) + return(NULL); + break; + + /* Invalid referenced object type */ + case H5R_DATASET_REGION1: + case H5R_DATASET_REGION2: + case H5R_ATTR: + case H5R_MAXTYPE: + case H5R_BADTYPE: + default: + return(NULL); + } + + /* Retrieve info about the referenced object */ + if(H5Oget_info3(ref_object, &oinfo, H5O_INFO_ALL) < 0) + return(NULL); + /* Create ref path table, if it hasn't already been created */ if(ref_path_table == NULL) init_ref_path_table(); - node = (ref_path_node_t *)H5SL_search(ref_path_table, &ref); + node = (ref_path_node_t *)H5SL_search(ref_path_table, &oinfo.token); return(node ? node->path : NULL); } diff --git a/tools/lib/h5tools_ref.h b/tools/lib/h5tools_ref.h index b7bd9a3..debbea1 100644 --- a/tools/lib/h5tools_ref.h +++ b/tools/lib/h5tools_ref.h @@ -21,11 +21,11 @@ extern "C" { #endif H5TOOLS_DLL herr_t fill_ref_path_table(hid_t fid); -H5TOOLS_DLL const char *lookup_ref_path(haddr_t ref); +H5TOOLS_DLL const char *lookup_ref_path(H5R_ref_t refbuf); H5TOOLS_DLL int get_next_xid(void); -H5TOOLS_DLL haddr_t get_fake_xid(void); -H5TOOLS_DLL haddr_t ref_path_table_lookup(const char *); -H5TOOLS_DLL haddr_t ref_path_table_gen_fake(const char *); +H5TOOLS_DLL void get_fake_token(H5O_token_t *token); +H5TOOLS_DLL int ref_path_table_lookup(const char *thepath, H5O_token_t *token); +H5TOOLS_DLL void ref_path_table_gen_fake(const char *path, H5O_token_t *token); H5TOOLS_DLL int term_ref_path_table(void); #ifdef __cplusplus diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c index 0aa5152..6515ecd 100644 --- a/tools/lib/h5tools_str.c +++ b/tools/lib/h5tools_str.c @@ -292,7 +292,7 @@ h5tools_str_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info, size_t i = 0; hsize_t curr_pos = elmtno; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); H5TOOLS_DEBUG("elmtno=%ld, ctx->ndims=%d", elmtno, ctx->ndims); h5tools_str_reset(str); @@ -325,7 +325,7 @@ h5tools_str_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info, h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t)elmtno); H5TOOLS_DEBUG("str=%s", str->s); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); /* Add prefix and suffix to the index */ return h5tools_str_fmt(str, (size_t)0, OPT(info->idx_fmt, "%s: ")); @@ -693,7 +693,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai H5T_class_t type_class; char *ret_value = NULL; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); /* Build default formats for long long types */ if(!fmt_llong[0]) { HDsnprintf(fmt_llong, sizeof(fmt_llong), "%%%sd", H5_PRINTF_LL_WIDTH); @@ -1091,7 +1091,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai if (H5Tequal(type, H5T_STD_REF)) { H5O_type_t obj_type = -1; /* Object type */ H5R_type_t ref_type; /* Reference type */ - const H5R_ref_t *ref_vp = (const H5R_ref_t *)vp; + H5R_ref_t *ref_vp = (H5R_ref_t *)vp; H5TOOLS_DEBUG("H5T_REFERENCE:H5T_STD_REF"); ref_type = H5Rget_type(ref_vp); @@ -1100,13 +1100,13 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai case H5R_OBJECT1: { /* Object references -- show the type and OID of the referenced object. */ - H5O_info_t oi; + H5O_info2_t oi; + char *obj_addr_str = NULL; H5TOOLS_DEBUG("ref_type is H5R_OBJECT1"); if((obj = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - H5Oget_info2(obj, &oi, H5O_INFO_BASIC); - if(H5Oclose(obj) < 0) - H5TOOLS_ERROR(NULL, "H5Oclose H5R_OBJECT1 failed"); + H5Oget_info3(obj, &oi, H5O_INFO_BASIC); + H5Otoken_to_str(obj, &oi.token, &obj_addr_str); } else H5TOOLS_ERROR(NULL, "H5Ropen_object H5R_OBJECT1 failed"); @@ -1132,20 +1132,30 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai h5tools_str_append(str, "%u-%s", (unsigned) oi.type, H5_TOOLS_UNKNOWN); break; } /* end switch */ - H5Oclose(obj); - h5tools_str_sprint_reference(str, info, container, ref_vp); + + h5tools_str_sprint_reference(str, ref_vp); /* Print OID */ if(info->obj_hidefileno) - h5tools_str_append(str, info->obj_format, oi.addr); + h5tools_str_append(str, info->obj_format, obj_addr_str); else - h5tools_str_append(str, info->obj_format, oi.fileno, oi.addr); + h5tools_str_append(str, info->obj_format, oi.fileno, obj_addr_str); + + if(obj_addr_str) { + H5free_memory(obj_addr_str); + obj_addr_str = NULL; } + + if(obj >= 0) + if(H5Oclose(obj) < 0) + H5TOOLS_ERROR(NULL, "H5Oclose H5R_OBJECT1 failed"); + } + break; case H5R_DATASET_REGION1: H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1"); h5tools_str_append(str, H5_TOOLS_DATASET); - h5tools_str_sprint_reference(str, info, container, ref_vp); + h5tools_str_sprint_reference(str, ref_vp); break; case H5R_OBJECT2: H5TOOLS_DEBUG("ref_type is H5R_OBJECT2"); @@ -1169,17 +1179,17 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai h5tools_str_append(str, H5_TOOLS_UNKNOWN); break; } /* end switch */ - h5tools_str_sprint_reference(str, info, container, ref_vp); + h5tools_str_sprint_reference(str, ref_vp); break; case H5R_DATASET_REGION2: H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2"); h5tools_str_append(str, H5_TOOLS_DATASET); - h5tools_str_sprint_reference(str, info, container, ref_vp); + h5tools_str_sprint_reference(str, ref_vp); break; case H5R_ATTR: H5TOOLS_DEBUG("ref_type is H5R_ATTR"); h5tools_str_append(str, H5_TOOLS_ATTRIBUTE); - h5tools_str_sprint_reference(str, info, container, ref_vp); + h5tools_str_sprint_reference(str, ref_vp); break; case H5R_BADTYPE: case H5R_MAXTYPE: @@ -1334,10 +1344,9 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai } /* end switch */ } -done: ret_value = h5tools_str_fmt(str, start, OPT(info->elmt_fmt, "%s")); - H5TOOLS_ENDDEBUG("exit with %s", ret_value); + H5TOOLS_ENDDEBUG(" with %s", ret_value); return ret_value; } @@ -1351,19 +1360,18 @@ done: *------------------------------------------------------------------------- */ void -h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info, - hid_t container, H5R_ref_t *ref_vp) +h5tools_str_sprint_reference(h5tools_str_t *str, H5R_ref_t *ref_vp) { ssize_t buf_size; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); h5tools_str_append(str, " \""); buf_size = H5Rget_file_name(ref_vp, NULL, 0); H5TOOLS_DEBUG("buf_size=%ld", buf_size); if (buf_size) { char *file_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); - if (H5Rget_file_name(ref_vp, file_name, buf_size + 1) >= 0) { + if (H5Rget_file_name(ref_vp, file_name, (size_t)buf_size + 1) >= 0) { file_name[buf_size] = '\0'; H5TOOLS_DEBUG("name=%s", file_name); h5tools_str_append(str, "%s", file_name); @@ -1375,7 +1383,7 @@ h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info, H5TOOLS_DEBUG("buf_size=%ld", buf_size); if (buf_size) { char *obj_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); - if (H5Rget_obj_name(ref_vp, H5P_DEFAULT, obj_name, buf_size + 1) >= 0) { + if (H5Rget_obj_name(ref_vp, H5P_DEFAULT, obj_name, (size_t)buf_size + 1) >= 0) { obj_name[buf_size] = '\0'; H5TOOLS_DEBUG("name=%s", obj_name); h5tools_str_append(str, "%s", obj_name); @@ -1388,7 +1396,7 @@ h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info, H5TOOLS_DEBUG("buf_size=%ld", buf_size); if (buf_size) { char *attr_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); - if (H5Rget_attr_name(ref_vp, attr_name, buf_size + 1) >= 0) { + if (H5Rget_attr_name(ref_vp, attr_name, (size_t)buf_size + 1) >= 0) { attr_name[buf_size] = '\0'; H5TOOLS_DEBUG("name=%s", attr_name); h5tools_str_append(str, "/%s", attr_name); @@ -1398,7 +1406,7 @@ h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info, } h5tools_str_append(str, "\""); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); } /*------------------------------------------------------------------------- diff --git a/tools/lib/h5tools_str.h b/tools/lib/h5tools_str.h index 6fdf36a..02bfe40 100644 --- a/tools/lib/h5tools_str.h +++ b/tools/lib/h5tools_str.h @@ -41,7 +41,7 @@ H5TOOLS_DLL char *h5tools_str_region_prefix(h5tools_str_t *str, const h5tool_ H5TOOLS_DLL void h5tools_str_dump_space_slabs(h5tools_str_t *, hid_t, const h5tool_format_t *, h5tools_context_t *ctx); H5TOOLS_DLL void h5tools_str_dump_space_blocks(h5tools_str_t *, hid_t, const h5tool_format_t *); H5TOOLS_DLL void h5tools_str_dump_space_points(h5tools_str_t *, hid_t, const h5tool_format_t *); -H5TOOLS_DLL void h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info, hid_t container, H5R_ref_t *vp); +H5TOOLS_DLL void h5tools_str_sprint_reference(h5tools_str_t *str, H5R_ref_t *vp); H5TOOLS_DLL char *h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t container, hid_t type, void *vp, h5tools_context_t *ctx); diff --git a/tools/lib/h5tools_type.c b/tools/lib/h5tools_type.c index f63c228..22e4a39 100644 --- a/tools/lib/h5tools_type.c +++ b/tools/lib/h5tools_type.c @@ -26,7 +26,7 @@ hid_t h5tools_get_little_endian_type(hid_t tid) { - hid_t p_type=-1; + hid_t p_type=H5I_INVALID_HID; H5T_class_t type_class; size_t size; H5T_sign_t sign; @@ -106,7 +106,7 @@ h5tools_get_little_endian_type(hid_t tid) hid_t h5tools_get_big_endian_type(hid_t tid) { - hid_t p_type = -1; + hid_t p_type = H5I_INVALID_HID; H5T_class_t type_class; size_t size; H5T_sign_t sign; diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index 1036199..45e436c 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -53,11 +53,11 @@ unsigned outBuffOffset; FILE* overflow_file = NULL; /* local functions */ -static void init_table(table_t **tbl); +static void init_table(hid_t fid, table_t **tbl); #ifdef H5DUMP_DEBUG -static void dump_table(char* tablename, table_t *table); +static void dump_table(hid_t fid, char* tablename, table_t *table); #endif /* H5DUMP_DEBUG */ -static void add_obj(table_t *table, haddr_t objno, const char *objname, hbool_t recorded); +static void add_obj(table_t *table, const H5O_token_t *obj_token, const char *objname, hbool_t recorded); /*------------------------------------------------------------------------- * Function: parallel_print @@ -599,10 +599,11 @@ print_version(const char *progname) *------------------------------------------------------------------------- */ static void -init_table(table_t **tbl) +init_table(hid_t fid, table_t **tbl) { table_t *table = (table_t *)HDmalloc(sizeof(table_t)); + table->fid = fid; table->size = 20; table->nobjs = 0; table->objs = (obj_t *)HDmalloc(table->size * sizeof(obj_t)); @@ -644,15 +645,21 @@ free_table(table_t *table) *------------------------------------------------------------------------- */ static void -dump_table(char* tablename, table_t *table) +dump_table(hid_t fid, char* tablename, table_t *table) { unsigned u; + char *obj_addr_str = NULL; PRINTSTREAM(rawoutstream,"%s: # of entries = %d\n", tablename,table->nobjs); - for (u = 0; u < table->nobjs; u++) - PRINTSTREAM(rawoutstream,"%a %s %d %d\n", table->objs[u].objno, + for (u = 0; u < table->nobjs; u++) { + H5VLconnector_token_to_str(fid, table->objs[u].obj_token, &obj_addr_str); + + PRINTSTREAM(rawoutstream,"%s %s %d %d\n", obj_addr_str, table->objs[u].objname, table->objs[u].displayed, table->objs[u].recorded); + + H5VLfree_token_str(fid, obj_addr_str); + } } @@ -667,9 +674,9 @@ dump_table(char* tablename, table_t *table) void dump_tables(find_objs_t *info) { - dump_table("group_table", info->group_table); - dump_table("dset_table", info->dset_table); - dump_table("type_table", info->type_table); + dump_table(info->fid, "group_table", info->group_table); + dump_table(info->fid, "dset_table", info->dset_table); + dump_table(info->fid, "type_table", info->type_table); } #endif /* H5DUMP_DEBUG */ @@ -685,13 +692,17 @@ dump_tables(find_objs_t *info) *------------------------------------------------------------------------- */ H5_ATTR_PURE obj_t * -search_obj(table_t *table, haddr_t objno) +search_obj(table_t *table, const H5O_token_t *obj_token) { unsigned u; + int token_cmp; - for(u = 0; u < table->nobjs; u++) - if(table->objs[u].objno == objno) + for(u = 0; u < table->nobjs; u++) { + if(H5Otoken_cmp(table->fid, &table->objs[u].obj_token, obj_token, &token_cmp) < 0) + return NULL; + if(!token_cmp) return &(table->objs[u]); + } return NULL; } @@ -708,7 +719,7 @@ search_obj(table_t *table, haddr_t objno) *------------------------------------------------------------------------- */ static herr_t -find_objs_cb(const char *name, const H5O_info_t *oinfo, const char *already_seen, void *op_data) +find_objs_cb(const char *name, const H5O_info2_t *oinfo, const char *already_seen, void *op_data) { find_objs_t *info = (find_objs_t*)op_data; herr_t ret_value = 0; @@ -716,26 +727,26 @@ find_objs_cb(const char *name, const H5O_info_t *oinfo, const char *already_seen switch(oinfo->type) { case H5O_TYPE_GROUP: if(NULL == already_seen) - add_obj(info->group_table, oinfo->addr, name, TRUE); + add_obj(info->group_table, &oinfo->token, name, TRUE); break; case H5O_TYPE_DATASET: if(NULL == already_seen) { - hid_t dset = -1; + hid_t dset = H5I_INVALID_HID; /* Add the dataset to the list of objects */ - add_obj(info->dset_table, oinfo->addr, name, TRUE); + add_obj(info->dset_table, &oinfo->token, name, TRUE); /* Check for a dataset that uses a named datatype */ if((dset = H5Dopen2(info->fid, name, H5P_DEFAULT)) >= 0) { hid_t type = H5Dget_type(dset); if(H5Tcommitted(type) > 0) { - H5O_info_t type_oinfo; + H5O_info2_t type_oinfo; - H5Oget_info2(type, &type_oinfo, H5O_INFO_BASIC); - if(search_obj(info->type_table, type_oinfo.addr) == NULL) - add_obj(info->type_table, type_oinfo.addr, name, FALSE); + H5Oget_info3(type, &type_oinfo, H5O_INFO_BASIC); + if(search_obj(info->type_table, &type_oinfo.token) == NULL) + add_obj(info->type_table, &type_oinfo.token, name, FALSE); } /* end if */ H5Tclose(type); @@ -750,8 +761,8 @@ find_objs_cb(const char *name, const H5O_info_t *oinfo, const char *already_seen if(NULL == already_seen) { obj_t *found_obj; - if((found_obj = search_obj(info->type_table, oinfo->addr)) == NULL) - add_obj(info->type_table, oinfo->addr, name, TRUE); + if((found_obj = search_obj(info->type_table, &oinfo->token)) == NULL) + add_obj(info->type_table, &oinfo->token, name, TRUE); else { /* Use latest version of name */ HDfree(found_obj->objname); @@ -791,9 +802,9 @@ init_objs(hid_t fid, find_objs_t *info, table_t **group_table, herr_t ret_value = SUCCEED; /* Initialize the tables */ - init_table(group_table); - init_table(dset_table); - init_table(type_table); + init_table(fid, group_table); + init_table(fid, dset_table); + init_table(fid, type_table); /* Init the find_objs_t */ info->fid = fid; @@ -829,7 +840,7 @@ done: *------------------------------------------------------------------------- */ static void -add_obj(table_t *table, haddr_t objno, const char *objname, hbool_t record) +add_obj(table_t *table, const H5O_token_t *obj_token, const char *objname, hbool_t record) { size_t u; @@ -843,7 +854,7 @@ add_obj(table_t *table, haddr_t objno, const char *objname, hbool_t record) u = table->nobjs++; /* Set information about object */ - table->objs[u].objno = objno; + HDmemcpy(&table->objs[u].obj_token, obj_token, sizeof(H5O_token_t)); table->objs[u].objname = HDstrdup(objname); table->objs[u].recorded = record; table->objs[u].displayed = 0; @@ -893,7 +904,7 @@ int H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_t *link_info, hbool_t get_obj_type) { htri_t l_ret; - H5O_info_t trg_oinfo; + H5O_info2_t trg_oinfo; hid_t fapl = H5P_DEFAULT; hid_t lapl = H5P_DEFAULT; int ret_value = -1; /* init to fail */ @@ -915,7 +926,7 @@ H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_ } /* end if */ /* get info from link */ - if(H5Lget_info(file_id, linkpath, &(link_info->linfo), H5P_DEFAULT) < 0) { + if(H5Lget_info2(file_id, linkpath, &(link_info->linfo), H5P_DEFAULT) < 0) { if(link_info->opt.msg_mode == 1) parallel_print("Warning: unable to get link info from <%s>\n",linkpath); H5TOOLS_GOTO_DONE(FAIL); @@ -971,7 +982,7 @@ H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_ } /* get target object info */ - if(H5Oget_info_by_name2(file_id, linkpath, &trg_oinfo, H5O_INFO_BASIC, lapl) < 0) { + if(H5Oget_info_by_name3(file_id, linkpath, &trg_oinfo, H5O_INFO_BASIC, lapl) < 0) { if(link_info->opt.msg_mode == 1) parallel_print("Warning: unable to get object information for <%s>\n", linkpath); H5TOOLS_GOTO_DONE(FAIL); @@ -985,8 +996,8 @@ H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_ } /* end if */ /* set target obj type to return */ + HDmemcpy(&link_info->obj_token, &trg_oinfo.token, sizeof(H5O_token_t)); link_info->trg_type = trg_oinfo.type; - link_info->objno = trg_oinfo.addr; link_info->fileno = trg_oinfo.fileno; } /* end if */ else diff --git a/tools/lib/h5tools_utils.h b/tools/lib/h5tools_utils.h index 17c16bf..366800a 100644 --- a/tools/lib/h5tools_utils.h +++ b/tools/lib/h5tools_utils.h @@ -95,14 +95,15 @@ H5TOOLS_DLL int get_option(int argc, const char **argv, const char *opt, const s /*struct taken from the dumper. needed in table struct*/ typedef struct obj_t { - haddr_t objno; - char *objname; - hbool_t displayed; /* Flag to indicate that the object has been displayed */ - hbool_t recorded; /* Flag for named datatypes to indicate they were found in the group hierarchy */ + H5O_token_t obj_token; + char *objname; + hbool_t displayed; /* Flag to indicate that the object has been displayed */ + hbool_t recorded; /* Flag for named datatypes to indicate they were found in the group hierarchy */ } obj_t; /*struct for the tables that the find_objs function uses*/ typedef struct table_t { + hid_t fid; size_t size; size_t nobjs; obj_t *objs; @@ -131,7 +132,7 @@ H5TOOLS_DLL void free_table(table_t *table); H5TOOLS_DLL void dump_tables(find_objs_t *info) #endif /* H5DUMP_DEBUG */ H5TOOLS_DLL herr_t init_objs(hid_t fid, find_objs_t *info, table_t **group_table, table_t **dset_table, table_t **type_table); -H5TOOLS_DLL obj_t *search_obj(table_t *temp, haddr_t objno); +H5TOOLS_DLL obj_t *search_obj(table_t *temp, const H5O_token_t *obj_token); #ifndef H5_HAVE_TMPFILE H5TOOLS_DLL FILE *tmpfile(void); #endif @@ -158,9 +159,9 @@ typedef struct { H5O_type_t trg_type; /* OUT: target type */ char *trg_path; /* OUT: target obj path. This must be freed * when used with H5tools_get_symlink_info() */ - haddr_t objno; /* OUT: target object address */ + H5O_token_t obj_token; /* OUT: target object token */ unsigned long fileno; /* OUT: File number that target object is located in */ - H5L_info_t linfo; /* OUT: link info */ + H5L_info2_t linfo; /* OUT: link info */ h5tool_opt_t opt; /* IN: options */ } h5tool_link_info_t; diff --git a/tools/lib/h5trav.c b/tools/lib/h5trav.c index 1ecd5c0..dc7e27d 100644 --- a/tools/lib/h5trav.c +++ b/tools/lib/h5trav.c @@ -21,7 +21,7 @@ *------------------------------------------------------------------------- */ typedef struct trav_addr_path_t { - haddr_t addr; + H5O_token_t token; char *path; } trav_addr_path_t; @@ -43,7 +43,7 @@ typedef struct { hbool_t is_absolute; /* Whether the traversal has absolute paths */ const char *base_grp_name; /* Name of the group that serves as the base * for iteration */ - unsigned fields; /* Fields needed in H5O_info_t struct */ + unsigned fields; /* Fields needed in H5O_info2_t struct */ } trav_ud_traverse_t; typedef struct { @@ -65,10 +65,10 @@ typedef struct trav_path_op_data_t { */ static void trav_table_add(trav_table_t *table, const char *objname, - const H5O_info_t *oinfo); + const H5O_info2_t *oinfo); static void trav_table_addlink(trav_table_t *table, - haddr_t objno, + const H5O_token_t *obj_token, const char *path); /*------------------------------------------------------------------------- @@ -116,15 +116,15 @@ h5trav_set_verbose(int print_verbose) /*------------------------------------------------------------------------- - * Function: trav_addr_add + * Function: trav_token_add * - * Purpose: Add a hardlink address to visited data structure + * Purpose: Add an object token to visited data structure * * Return: void *------------------------------------------------------------------------- */ static void -trav_addr_add(trav_addr_t *visited, haddr_t addr, const char *path) +trav_token_add(trav_addr_t *visited, H5O_token_t *token, const char *path) { size_t idx; /* Index of address to use */ @@ -136,33 +136,37 @@ trav_addr_add(trav_addr_t *visited, haddr_t addr, const char *path) /* Append it */ idx = visited->nused++; - visited->objs[idx].addr = addr; + HDmemcpy(&visited->objs[idx].token, token, sizeof(H5O_token_t)); visited->objs[idx].path = HDstrdup(path); -} /* end trav_addr_add() */ +} /* end trav_token_add() */ /*------------------------------------------------------------------------- - * Function: trav_addr_visited + * Function: trav_token_visited * - * Purpose: Check if an address has already been visited + * Purpose: Check if an object token has already been seen * * Return: TRUE/FALSE *------------------------------------------------------------------------- */ H5_ATTR_PURE static const char * -trav_addr_visited(trav_addr_t *visited, haddr_t addr) +trav_token_visited(hid_t loc_id, trav_addr_t *visited, H5O_token_t *token) { size_t u; /* Local index variable */ + int token_cmp; /* Look for address */ - for(u = 0; u < visited->nused; u++) + for(u = 0; u < visited->nused; u++) { /* Check for address already in array */ - if(visited->objs[u].addr == addr) + if(H5Otoken_cmp(loc_id, &visited->objs[u].token, token, &token_cmp) < 0) + return NULL; + if(!token_cmp) return(visited->objs[u].path); + } - /* Didn't find address */ + /* Didn't find object token */ return(NULL); -} /* end trav_addr_visited() */ +} /* end trav_token_visited() */ /*------------------------------------------------------------------------- @@ -172,7 +176,7 @@ trav_addr_visited(trav_addr_t *visited, haddr_t addr) *------------------------------------------------------------------------- */ static herr_t -traverse_cb(hid_t loc_id, const char *path, const H5L_info_t *linfo, +traverse_cb(hid_t loc_id, const char *path, const H5L_info2_t *linfo, void *_udata) { trav_ud_traverse_t *udata = (trav_ud_traverse_t *)_udata; /* User data */ @@ -199,10 +203,10 @@ traverse_cb(hid_t loc_id, const char *path, const H5L_info_t *linfo, /* Perform the correct action for different types of links */ if(linfo->type == H5L_TYPE_HARD) { - H5O_info_t oinfo; + H5O_info2_t oinfo; /* Get information about the object */ - if(H5Oget_info_by_name2(loc_id, path, &oinfo, udata->fields, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name3(loc_id, path, &oinfo, udata->fields, H5P_DEFAULT) < 0) { if(new_name) HDfree(new_name); return(H5_ITER_ERROR); @@ -212,8 +216,8 @@ traverse_cb(hid_t loc_id, const char *path, const H5L_info_t *linfo, * already visited, if it isn't there already */ if(oinfo.rc > 1) - if(NULL == (already_visited = trav_addr_visited(udata->seen, oinfo.addr))) - trav_addr_add(udata->seen, oinfo.addr, full_name); + if(NULL == (already_visited = trav_token_visited(loc_id, udata->seen, &oinfo.token))) + trav_token_add(udata->seen, &oinfo.token, full_name); /* Make 'visit object' callback */ if(udata->visitor->visit_obj) @@ -254,11 +258,11 @@ static int traverse(hid_t file_id, const char *grp_name, hbool_t visit_start, hbool_t recurse, const trav_visitor_t *visitor, unsigned fields) { - H5O_info_t oinfo; /* Object info for starting group */ + H5O_info2_t oinfo; /* Object info for starting group */ int ret_value = 0; /* Get info for starting object */ - if(H5Oget_info_by_name2(file_id, grp_name, &oinfo, fields, H5P_DEFAULT) < 0) + if(H5Oget_info_by_name3(file_id, grp_name, &oinfo, fields, H5P_DEFAULT) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Oget_info_by_name failed"); /* Visit the starting object */ @@ -276,7 +280,7 @@ traverse(hid_t file_id, const char *grp_name, hbool_t visit_start, /* Check for multiple links to top group */ if(oinfo.rc > 1) - trav_addr_add(&seen, oinfo.addr, grp_name); + trav_token_add(&seen, &oinfo.token, grp_name); /* Set up user data structure */ udata.seen = &seen; @@ -288,12 +292,12 @@ traverse(hid_t file_id, const char *grp_name, hbool_t visit_start, /* Check for iteration of links vs. visiting all links recursively */ if(recurse) { /* Visit all links in group, recursively */ - if(H5Lvisit_by_name(file_id, grp_name, trav_index_by, trav_index_order, traverse_cb, &udata, H5P_DEFAULT) < 0) + if(H5Lvisit_by_name2(file_id, grp_name, trav_index_by, trav_index_order, traverse_cb, &udata, H5P_DEFAULT) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Lvisit_by_name failed"); } /* end if */ else { /* Iterate over links in group */ - if(H5Literate_by_name(file_id, grp_name, trav_index_by, trav_index_order, NULL, traverse_cb, &udata, H5P_DEFAULT) < 0) + if(H5Literate_by_name2(file_id, grp_name, trav_index_by, trav_index_order, NULL, traverse_cb, &udata, H5P_DEFAULT) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Literate_by_name failed"); } /* end else */ @@ -338,7 +342,9 @@ trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type) info->paths[idx].path = HDstrdup(path); info->paths[idx].type = obj_type; info->paths[idx].fileno = 0; - info->paths[idx].objno = HADDR_UNDEF; + + /* Set token to 'undefined' values */ + info->paths[idx].obj_token = H5O_TOKEN_UNDEF; } } /* end trav_info_add() */ @@ -354,15 +360,15 @@ trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type) void trav_fileinfo_add(trav_info_t *info, hid_t loc_id) { - H5O_info_t oinfo; + H5O_info2_t oinfo; size_t idx = info->nused - 1; - if ( info->paths[idx].path && HDstrcmp(info->paths[idx].path, ".")) - H5Oget_info_by_name2(loc_id, info->paths[idx].path, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); + if(info->paths[idx].path && HDstrcmp(info->paths[idx].path, ".")) + H5Oget_info_by_name3(loc_id, info->paths[idx].path, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT); else - H5Oget_info2(loc_id, &oinfo, H5O_INFO_BASIC); + H5Oget_info3(loc_id, &oinfo, H5O_INFO_BASIC); - info->paths[idx].objno = oinfo.addr; + HDmemcpy(&info->paths[idx].obj_token, &oinfo.token, sizeof(H5O_token_t)); info->paths[idx].fileno = oinfo.fileno; } /* end trav_fileinfo_add() */ @@ -377,7 +383,7 @@ trav_fileinfo_add(trav_info_t *info, hid_t loc_id) *------------------------------------------------------------------------- */ int -trav_info_visit_obj(const char *path, const H5O_info_t *oinfo, +trav_info_visit_obj(const char *path, const H5O_info2_t *oinfo, const char H5_ATTR_UNUSED *already_visited, void *udata) { size_t idx; @@ -390,7 +396,7 @@ trav_info_visit_obj(const char *path, const H5O_info_t *oinfo, /* set object addr and fileno. These are for checking same object */ info_p = (trav_info_t *) udata; idx = info_p->nused - 1; - info_p->paths[idx].objno = oinfo->addr; + HDmemcpy(&info_p->paths[idx].obj_token, &oinfo->token, sizeof(H5O_token_t)); info_p->paths[idx].fileno = oinfo->fileno; return(0); @@ -407,7 +413,7 @@ trav_info_visit_obj(const char *path, const H5O_info_t *oinfo, *------------------------------------------------------------------------- */ int -trav_info_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata) +trav_info_visit_lnk(const char *path, const H5L_info2_t *linfo, void *udata) { /* Add the link to the 'info' struct */ trav_info_add((trav_info_t *)udata, path, ((linfo->type == H5L_TYPE_SOFT) ? H5TRAV_TYPE_LINK : H5TRAV_TYPE_UDLINK)); @@ -547,7 +553,7 @@ trav_info_free(trav_info_t *info) *------------------------------------------------------------------------- */ static int -trav_table_visit_obj(const char *path, const H5O_info_t *oinfo, +trav_table_visit_obj(const char *path, const H5O_info2_t *oinfo, const char *already_visited, void *udata) { trav_table_t *table = (trav_table_t *)udata; @@ -558,7 +564,7 @@ trav_table_visit_obj(const char *path, const H5O_info_t *oinfo, trav_table_add(table, path, oinfo); else /* Add alias for object to table */ - trav_table_addlink(table, oinfo->addr, path); + trav_table_addlink(table, &oinfo->token, path); return 0; } /* end trav_table_visit_obj() */ @@ -574,7 +580,7 @@ trav_table_visit_obj(const char *path, const H5O_info_t *oinfo, *------------------------------------------------------------------------- */ static int -trav_table_visit_lnk(const char *path, const H5L_info_t H5_ATTR_UNUSED *linfo, void *udata) +trav_table_visit_lnk(const char *path, const H5L_info2_t H5_ATTR_UNUSED *linfo, void *udata) { /* Add the link to the 'table' struct */ trav_table_add((trav_table_t *)udata, path, NULL); @@ -663,9 +669,7 @@ h5trav_getindext(const char *name, const trav_table_t *table) *------------------------------------------------------------------------- */ static void -trav_table_add(trav_table_t *table, - const char *path, - const H5O_info_t *oinfo) +trav_table_add(trav_table_t *table, const char *path, const H5O_info2_t *oinfo) { size_t new_obj; @@ -676,7 +680,11 @@ trav_table_add(trav_table_t *table, } /* end if */ new_obj = table->nobjs++; - table->objs[new_obj].objno = oinfo ? oinfo->addr : HADDR_UNDEF; + if(oinfo) + HDmemcpy(&table->objs[new_obj].obj_token, &oinfo->token, sizeof(H5O_token_t)); + else + /* Set token to 'undefined' values */ + table->objs[new_obj].obj_token = H5O_TOKEN_UNDEF; table->objs[new_obj].flags[0] = table->objs[new_obj].flags[1] = 0; table->objs[new_obj].is_same_trgobj = 0; table->objs[new_obj].name = (char *)HDstrdup(path); @@ -696,13 +704,16 @@ trav_table_add(trav_table_t *table, *------------------------------------------------------------------------- */ static void -trav_table_addlink(trav_table_t *table, haddr_t objno, const char *path) +trav_table_addlink(trav_table_t *table, const H5O_token_t *obj_token, const char *path) { size_t i; /* Local index variable */ + int token_cmp; if(table) { for(i = 0; i < table->nobjs; i++) { - if(table->objs[i].objno == objno) { + if(H5Otoken_cmp(table->fid, &table->objs[i].obj_token, obj_token, &token_cmp) < 0) + return; + if(!token_cmp) { size_t n; /* already inserted? */ @@ -720,9 +731,9 @@ trav_table_addlink(trav_table_t *table, haddr_t objno, const char *path) table->objs[i].links[n].new_name = (char *)HDstrdup(path); return; - } /* end for */ + } /* end if */ } /* end for */ - } + } /* end if */ } @@ -748,7 +759,10 @@ void trav_table_addflags(unsigned *flags, } /* end if */ new_obj = table->nobjs++; - table->objs[new_obj].objno = 0; + + /* Set token to 'undefined' values */ + table->objs[new_obj].obj_token = H5O_TOKEN_UNDEF; + table->objs[new_obj].flags[0] = flags[0]; table->objs[new_obj].flags[1] = flags[1]; table->objs[new_obj].is_same_trgobj = 0; @@ -769,10 +783,11 @@ void trav_table_addflags(unsigned *flags, * Return: void *------------------------------------------------------------------------- */ -void trav_table_init(trav_table_t **tbl) +void trav_table_init(hid_t fid, trav_table_t **tbl) { trav_table_t* table = (trav_table_t*) HDmalloc(sizeof(trav_table_t)); if(table) { + table->fid = fid; table->size = 0; table->nobjs = 0; table->objs = NULL; @@ -834,8 +849,8 @@ trav_attr(hid_t #ifdef H5TRAV_PRINT_SPACE } else { - hid_t attr = -1; - hid_t space = -1; + hid_t attr = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; hsize_t size[H5S_MAX_RANK]; int ndims; int i; @@ -893,8 +908,8 @@ trav_attr(hid_t *------------------------------------------------------------------------- */ static int -trav_print_visit_obj(const char *path, const H5O_info_t *oinfo, - const char *already_visited, void *udata) +trav_print_visit_obj(const char *path, const H5O_info2_t *oinfo, + const char *already_visited, void *udata) { trav_print_udata_t *print_udata = (trav_print_udata_t *)udata; /* Print the name of the object */ @@ -951,7 +966,7 @@ trav_print_visit_obj(const char *path, const H5O_info_t *oinfo, *------------------------------------------------------------------------- */ static int -trav_print_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata) +trav_print_visit_lnk(const char *path, const H5L_info2_t *linfo, void *udata) { trav_print_udata_t *print_udata = (trav_print_udata_t *)udata; diff --git a/tools/lib/h5trav.h b/tools/lib/h5trav.h index a1d33b7..88473ad 100644 --- a/tools/lib/h5trav.h +++ b/tools/lib/h5trav.h @@ -17,9 +17,9 @@ #include "hdf5.h" /* Typedefs for visiting objects */ -typedef herr_t (*h5trav_obj_func_t)(const char *path_name, const H5O_info_t *oinfo, +typedef herr_t (*h5trav_obj_func_t)(const char *path_name, const H5O_info2_t *oinfo, const char *first_seen, void *udata); -typedef herr_t (*h5trav_lnk_func_t)(const char *path_name, const H5L_info_t *linfo, +typedef herr_t (*h5trav_lnk_func_t)(const char *path_name, const H5L_info2_t *linfo, void *udata); /*------------------------------------------------------------------------- @@ -65,7 +65,7 @@ typedef struct symlink_trav_t { typedef struct trav_path_t { char *path; h5trav_type_t type; - haddr_t objno; /* object address */ + H5O_token_t obj_token; /* object token */ unsigned long fileno; /* File number that object is located in */ } trav_path_t; @@ -95,7 +95,7 @@ typedef struct trav_link_t { */ typedef struct trav_obj_t { - haddr_t objno; /* object address */ + H5O_token_t obj_token; /* object token */ unsigned flags[2]; /* h5diff.object is present or not in both files*/ hbool_t is_same_trgobj; /* same target object? no need to compare */ char *name; /* name */ @@ -112,6 +112,7 @@ typedef struct trav_obj_t { */ typedef struct trav_table_t { + hid_t fid; size_t size; size_t nobjs; trav_obj_t *objs; @@ -144,8 +145,8 @@ H5TOOLS_DLL hbool_t symlink_is_visited(symlink_trav_t *visited, H5L_type_t type, */ H5TOOLS_DLL int h5trav_getinfo(hid_t file_id, trav_info_t *info); H5TOOLS_DLL ssize_t h5trav_getindex(const trav_info_t *info, const char *obj); -H5TOOLS_DLL int trav_info_visit_obj (const char *path, const H5O_info_t *oinfo, const char *already_visited, void *udata); -H5TOOLS_DLL int trav_info_visit_lnk (const char *path, const H5L_info_t *linfo, void *udata); +H5TOOLS_DLL int trav_info_visit_obj(const char *path, const H5O_info2_t *oinfo, const char *already_visited, void *udata); +H5TOOLS_DLL int trav_info_visit_lnk(const char *path, const H5L_info2_t *linfo, void *udata); /*------------------------------------------------------------------------- * "h5trav table" public functions @@ -184,7 +185,7 @@ H5TOOLS_DLL void trav_fileinfo_add(trav_info_t *info, hid_t loc_id); *------------------------------------------------------------------------- */ -H5TOOLS_DLL void trav_table_init(trav_table_t **table); +H5TOOLS_DLL void trav_table_init(hid_t fid, trav_table_t **table); H5TOOLS_DLL void trav_table_free(trav_table_t *table); diff --git a/tools/lib/io_timer.c b/tools/lib/io_timer.c index cb89019..472824b 100644 --- a/tools/lib/io_timer.c +++ b/tools/lib/io_timer.c @@ -138,43 +138,43 @@ io_time_set(io_time_t *pt, timer_type t, int start_stop) switch(pt->type){ #ifdef H5_HAVE_PARALLEL case MPI_CLOCK: - if (start_stop == TSTART) { - pt->mpi_timer[t] = MPI_Wtime(); - - /* When we start the timer for HDF5_FINE_WRITE_FIXED_DIMS or HDF5_FINE_READ_FIXED_DIMS - * we compute the time it took to only open the file */ - if(t == HDF5_FINE_WRITE_FIXED_DIMS) - pt->total_time[HDF5_FILE_WRITE_OPEN] += pt->mpi_timer[t] - pt->mpi_timer[HDF5_GROSS_WRITE_FIXED_DIMS]; - else if(t == HDF5_FINE_READ_FIXED_DIMS) - pt->total_time[HDF5_FILE_READ_OPEN] += pt->mpi_timer[t] - pt->mpi_timer[HDF5_GROSS_READ_FIXED_DIMS]; - - } else { - pt->total_time[t] += MPI_Wtime() - pt->mpi_timer[t]; - pt->mpi_timer[t] = MPI_Wtime(); - - /* When we stop the timer for HDF5_GROSS_WRITE_FIXED_DIMS or HDF5_GROSS_READ_FIXED_DIMS - * we compute the time it took to close the file after the last read/write finished */ - if(t == HDF5_GROSS_WRITE_FIXED_DIMS) - pt->total_time[HDF5_FILE_WRITE_CLOSE] += pt->mpi_timer[t] - pt->mpi_timer[HDF5_FINE_WRITE_FIXED_DIMS]; - else if(t == HDF5_GROSS_READ_FIXED_DIMS) - pt->total_time[HDF5_FILE_READ_CLOSE] += pt->mpi_timer[t] - pt->mpi_timer[HDF5_FINE_READ_FIXED_DIMS]; - } - break; + if (start_stop == TSTART) { + pt->mpi_timer[t] = MPI_Wtime(); + + /* When we start the timer for HDF5_FINE_WRITE_FIXED_DIMS or HDF5_FINE_READ_FIXED_DIMS + * we compute the time it took to only open the file */ + if(t == HDF5_FINE_WRITE_FIXED_DIMS) + pt->total_time[HDF5_FILE_WRITE_OPEN] += pt->mpi_timer[t] - pt->mpi_timer[HDF5_GROSS_WRITE_FIXED_DIMS]; + else if(t == HDF5_FINE_READ_FIXED_DIMS) + pt->total_time[HDF5_FILE_READ_OPEN] += pt->mpi_timer[t] - pt->mpi_timer[HDF5_GROSS_READ_FIXED_DIMS]; + + } else { + pt->total_time[t] += MPI_Wtime() - pt->mpi_timer[t]; + pt->mpi_timer[t] = MPI_Wtime(); + + /* When we stop the timer for HDF5_GROSS_WRITE_FIXED_DIMS or HDF5_GROSS_READ_FIXED_DIMS + * we compute the time it took to close the file after the last read/write finished */ + if(t == HDF5_GROSS_WRITE_FIXED_DIMS) + pt->total_time[HDF5_FILE_WRITE_CLOSE] += pt->mpi_timer[t] - pt->mpi_timer[HDF5_FINE_WRITE_FIXED_DIMS]; + else if(t == HDF5_GROSS_READ_FIXED_DIMS) + pt->total_time[HDF5_FILE_READ_CLOSE] += pt->mpi_timer[t] - pt->mpi_timer[HDF5_FINE_READ_FIXED_DIMS]; + } + break; #else case MPI_CLOCK: - HDfprintf(stderr, "MPI clock set in serial library\n"); - return NULL; + HDfprintf(stderr, "MPI clock set in serial library\n"); + return NULL; #endif /* H5_HAVE_PARALLEL */ case SYS_CLOCK: if (start_stop == TSTART) { HDgettimeofday(&pt->sys_timer[t], NULL); - /* When we start the timer for HDF5_FINE_WRITE_FIXED_DIMS or HDF5_FINE_READ_FIXED_DIMS - * we compute the time it took to only open the file */ - if(t == HDF5_FINE_WRITE_FIXED_DIMS) - pt->total_time[HDF5_FILE_WRITE_OPEN] += sub_time(&(pt->sys_timer[t]), &(pt->sys_timer[HDF5_GROSS_WRITE_FIXED_DIMS])); - else if(t == HDF5_FINE_READ_FIXED_DIMS) - pt->total_time[HDF5_FILE_READ_OPEN] += sub_time(&(pt->sys_timer[t]), &(pt->sys_timer[HDF5_GROSS_READ_FIXED_DIMS])); + /* When we start the timer for HDF5_FINE_WRITE_FIXED_DIMS or HDF5_FINE_READ_FIXED_DIMS + * we compute the time it took to only open the file */ + if(t == HDF5_FINE_WRITE_FIXED_DIMS) + pt->total_time[HDF5_FILE_WRITE_OPEN] += sub_time(&(pt->sys_timer[t]), &(pt->sys_timer[HDF5_GROSS_WRITE_FIXED_DIMS])); + else if(t == HDF5_FINE_READ_FIXED_DIMS) + pt->total_time[HDF5_FILE_READ_OPEN] += sub_time(&(pt->sys_timer[t]), &(pt->sys_timer[HDF5_GROSS_READ_FIXED_DIMS])); } else { @@ -183,19 +183,19 @@ io_time_set(io_time_t *pt, timer_type t, int start_stop) HDgettimeofday(&sys_t, NULL); pt->total_time[t] += sub_time(&sys_t, &(pt->sys_timer[t])); - /* When we stop the timer for HDF5_GROSS_WRITE_FIXED_DIMS or HDF5_GROSS_READ_FIXED_DIMS - * we compute the time it took to close the file after the last read/write finished */ - if(t == HDF5_GROSS_WRITE_FIXED_DIMS) - pt->total_time[HDF5_FILE_WRITE_CLOSE] += sub_time(&(pt->sys_timer[t]), &(pt->sys_timer[HDF5_FINE_WRITE_FIXED_DIMS])); - else if(t == HDF5_GROSS_READ_FIXED_DIMS) - pt->total_time[HDF5_FILE_READ_CLOSE] += sub_time(&(pt->sys_timer[t]), &(pt->sys_timer[HDF5_FINE_READ_FIXED_DIMS])); + /* When we stop the timer for HDF5_GROSS_WRITE_FIXED_DIMS or HDF5_GROSS_READ_FIXED_DIMS + * we compute the time it took to close the file after the last read/write finished */ + if(t == HDF5_GROSS_WRITE_FIXED_DIMS) + pt->total_time[HDF5_FILE_WRITE_CLOSE] += sub_time(&(pt->sys_timer[t]), &(pt->sys_timer[HDF5_FINE_WRITE_FIXED_DIMS])); + else if(t == HDF5_GROSS_READ_FIXED_DIMS) + pt->total_time[HDF5_FILE_READ_CLOSE] += sub_time(&(pt->sys_timer[t]), &(pt->sys_timer[HDF5_FINE_READ_FIXED_DIMS])); } - break; + break; default: - HDfprintf(stderr, "Unknown time clock type (%d)\n", pt->type); - return NULL; + HDfprintf(stderr, "Unknown time clock type (%d)\n", pt->type); + return NULL; } /* end switch */ #if 0 @@ -221,10 +221,3 @@ io_time_get(io_time_t *pt, timer_type t) return pt->total_time[t]; } - -#if 0 -/* standalone is not working yet. Need fix later. -AKC- */ -#ifdef STANDALONE -#include "pio_standalone.c" -#endif -#endif diff --git a/tools/lib/io_timer.h b/tools/lib/io_timer.h index 78bf676..c1fa58e 100644 --- a/tools/lib/io_timer.h +++ b/tools/lib/io_timer.h @@ -28,6 +28,7 @@ #ifdef H5_HAVE_WINSOCK2_H # include <winsock2.h> #endif /* H5_HAVE_WINSOCK2_H */ + /* The different types of timers we can have */ typedef enum timer_type_ { HDF5_FILE_OPENCLOSE, @@ -70,10 +71,19 @@ typedef struct io_time_t { #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ + +#ifdef STANDALONE +io_time_t *io_time_new(clock_type t); +void io_time_destroy(io_time_t *pt); +io_time_t *io_time_set(io_time_t *pt, timer_type t, int start_stop); +double io_time_get(io_time_t *pt, timer_type t); +#else H5TOOLS_DLL io_time_t *io_time_new(clock_type t); H5TOOLS_DLL void io_time_destroy(io_time_t *pt); H5TOOLS_DLL io_time_t *io_time_set(io_time_t *pt, timer_type t, int start_stop); H5TOOLS_DLL double io_time_get(io_time_t *pt, timer_type t); +#endif + #ifdef __cplusplus } #endif /* __cplusplus */ diff --git a/tools/libtest/CMakeLists.txt b/tools/libtest/CMakeLists.txt index f3d28da..5f53272 100644 --- a/tools/libtest/CMakeLists.txt +++ b/tools/libtest/CMakeLists.txt @@ -15,4 +15,6 @@ else () endif () set_target_properties (h5tools_test_utils PROPERTIES FOLDER tools) -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/tools/libtest/h5tools_test_utils.c b/tools/libtest/h5tools_test_utils.c index 120f803..726f4c4 100644 --- a/tools/libtest/h5tools_test_utils.c +++ b/tools/libtest/h5tools_test_utils.c @@ -1000,7 +1000,7 @@ test_set_configured_fapl(void) * TEST-LOCAL VARIABLES * ************************/ - hid_t fapl_id = -1; + hid_t fapl_id = H5I_INVALID_HID; other_fa_t wrong_fa = {0x432, 0xf82, 0x9093}; H5FD_ros3_fapl_t ros3_anon_fa = {1, FALSE, "", "", ""}; H5FD_ros3_fapl_t ros3_auth_fa = { @@ -1150,7 +1150,7 @@ test_set_configured_fapl(void) int result; testcase C = cases[i]; - fapl_id = -1; + fapl_id = H5I_INVALID_HID; #if UTIL_TEST_DEBUG HDfprintf(stderr, "setup test %d\t%s\n", i, C.message); fflush(stderr); @@ -1183,7 +1183,7 @@ test_set_configured_fapl(void) if (fapl_id > 0) { FAIL_IF( FAIL == H5Pclose(fapl_id) ) } - fapl_id = -1; + fapl_id = H5I_INVALID_HID; #if UTIL_TEST_DEBUG HDfprintf(stderr, "after cleanup\n"); fflush(stderr); diff --git a/tools/src/h5copy/h5copy.c b/tools/src/h5copy/h5copy.c index 86bd6f6..e1370e2 100644 --- a/tools/src/h5copy/h5copy.c +++ b/tools/src/h5copy/h5copy.c @@ -211,8 +211,8 @@ main (int argc, const char *argv[]) H5E_auto2_t tools_func; void *edata; void *tools_edata; - hid_t fid_src = -1; - hid_t fid_dst = -1; + hid_t fid_src = H5I_INVALID_HID; + hid_t fid_dst = H5I_INVALID_HID; unsigned flag = 0; unsigned verbose = 0; unsigned parents = 0; diff --git a/tools/src/h5diff/ph5diff_main.c b/tools/src/h5diff/ph5diff_main.c index 380ab3b..5ba5fb3 100644 --- a/tools/src/h5diff/ph5diff_main.c +++ b/tools/src/h5diff/ph5diff_main.c @@ -126,7 +126,8 @@ int main(int argc, const char *argv[]) static void ph5diff_worker(int nID) { - hid_t file1_id = -1, file2_id = -1; + hid_t file1_id = H5I_INVALID_HID; + hid_t file2_id = H5I_INVALID_HID; while(1) { diff --git a/tools/src/h5dump/h5dump.c b/tools/src/h5dump/h5dump.c index 0222c8b..d97fdc0 100644 --- a/tools/src/h5dump/h5dump.c +++ b/tools/src/h5dump/h5dump.c @@ -1393,12 +1393,12 @@ error: int main(int argc, const char *argv[]) { - hid_t fid = -1; - hid_t gid = -1; + hid_t fid = H5I_INVALID_HID; + hid_t gid = H5I_INVALID_HID; hid_t fapl_id = H5P_DEFAULT; H5E_auto2_t func; H5E_auto2_t tools_func; - H5O_info_t oi; + H5O_info2_t oi; struct handler_t *hand = NULL; int i; unsigned u; @@ -1567,7 +1567,7 @@ main(int argc, const char *argv[]) } /* Get object info for root group */ - if(H5Oget_info_by_name2(fid, "/", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name3(fid, "/", &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__); h5tools_setstatus(EXIT_FAILURE); goto done; diff --git a/tools/src/h5dump/h5dump_ddl.c b/tools/src/h5dump/h5dump_ddl.c index bc426f2..a410fda 100644 --- a/tools/src/h5dump/h5dump_ddl.c +++ b/tools/src/h5dump/h5dump_ddl.c @@ -31,7 +31,7 @@ typedef struct { } trav_attr_udata_t; /* callback function used by H5Literate() */ -static herr_t dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void *op_data); +static herr_t dump_all_cb(hid_t group, const char *name, const H5L_info2_t *linfo, void *op_data); static int dump_extlink(hid_t group, const char *linkname, const char *objname); /*------------------------------------------------------------------------- @@ -152,7 +152,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * *------------------------------------------------------------------------- */ static herr_t -dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR_UNUSED *op_data) +dump_all_cb(hid_t group, const char *name, const H5L_info2_t *linfo, void H5_ATTR_UNUSED *op_data) { hid_t obj; hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */ @@ -200,10 +200,10 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR HDstrcat(obj_path, name); if(linfo->type == H5L_TYPE_HARD) { - H5O_info_t oinfo; + H5O_info2_t oinfo; /* Stat the object */ - if(H5Oget_info_by_name2(group, name, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name3(group, name, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { error_msg("unable to get object information for \"%s\"\n", name); h5tools_setstatus(EXIT_FAILURE); ret = FAIL; @@ -259,7 +259,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR if(oinfo.rc > 1 || hit_elink) { obj_t *found_obj; /* Found object */ - found_obj = search_obj(dset_table, oinfo.addr); + found_obj = search_obj(dset_table, &oinfo.token); if(found_obj == NULL) { ctx.indent_level++; @@ -596,9 +596,9 @@ link_iteration(hid_t gid, unsigned crt_order_flags) /* if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set in the group, then, sort by creation order, otherwise by name */ if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED)) - H5Literate(gid, sort_by, sort_order, NULL, dump_all_cb, NULL); + H5Literate2(gid, sort_by, sort_order, NULL, dump_all_cb, NULL); else - H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL); + H5Literate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL); } /*------------------------------------------------------------------------- @@ -612,9 +612,9 @@ link_iteration(hid_t gid, unsigned crt_order_flags) void dump_named_datatype(hid_t tid, const char *name) { - H5O_info_t oinfo; + H5O_info2_t oinfo; unsigned attr_crt_order_flags; - hid_t tcpl_id = -1; /* datatype creation property list ID */ + hid_t tcpl_id = H5I_INVALID_HID; /* datatype creation property list ID */ hsize_t curr_pos = 0; /* total data element position */ h5tools_str_t buffer; /* string into which to render */ h5tools_context_t ctx; /* print context */ @@ -670,7 +670,7 @@ dump_named_datatype(hid_t tid, const char *name) h5tools_dump_header_format->datatypeblockbegin); h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); - H5Oget_info2(tid, &oinfo, H5O_INFO_BASIC); + H5Oget_info3(tid, &oinfo, H5O_INFO_BASIC); /* Must check for uniqueness of all objects if we've traversed an elink, * otherwise only check if the reference count > 1. @@ -678,7 +678,7 @@ dump_named_datatype(hid_t tid, const char *name) if(oinfo.rc > 1 || hit_elink) { obj_t *found_obj; /* Found object */ - found_obj = search_obj(type_table, oinfo.addr); + found_obj = search_obj(type_table, &oinfo.token); if (found_obj == NULL) { error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__); @@ -739,7 +739,7 @@ done: void dump_group(hid_t gid, const char *name) { - H5O_info_t oinfo; + H5O_info2_t oinfo; hid_t dset; hid_t type; hid_t gcpl_id; @@ -816,9 +816,15 @@ dump_group(hid_t gid, const char *name) /* dump unamed type in root group */ for(u = 0; u < type_table->nobjs; u++) if(!type_table->objs[u].recorded) { + char *obj_addr_str = NULL; + dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT); type = H5Dget_type(dset); - HDsprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno); + + H5Otoken_to_str(dset, &type_table->objs[u].obj_token, &obj_addr_str); + HDsprintf(type_name, "#%s", obj_addr_str); + H5free_memory(obj_addr_str); + dump_function_table->dump_named_datatype_function(type, type_name); H5Tclose(type); H5Dclose(dset); @@ -830,7 +836,7 @@ dump_group(hid_t gid, const char *name) h5tools_dump_comment(rawoutstream, outputformat, &ctx, gid); - H5Oget_info2(gid, &oinfo, H5O_INFO_BASIC); + H5Oget_info3(gid, &oinfo, H5O_INFO_BASIC); /* Must check for uniqueness of all objects if we've traversed an elink, * otherwise only check if the reference count > 1. @@ -838,7 +844,7 @@ dump_group(hid_t gid, const char *name) if(oinfo.rc > 1 || hit_elink) { obj_t *found_obj; /* Found object */ - found_obj = search_obj(group_table, oinfo.addr); + found_obj = search_obj(group_table, &oinfo.token); if (found_obj == NULL) { error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__); @@ -1251,8 +1257,13 @@ dump_fcontents(hid_t fid) unsigned u; for (u = 0; u < type_table->nobjs; u++) { - if (!type_table->objs[u].recorded) - PRINTSTREAM(rawoutstream, " %-10s /#"H5_PRINTF_HADDR_FMT"\n", "datatype", type_table->objs[u].objno); + if (!type_table->objs[u].recorded) { + char *obj_addr_str = NULL; + + H5Otoken_to_str(fid, &type_table->objs[u].obj_token, &obj_addr_str); + PRINTSTREAM(rawoutstream, " %-10s /#%s\n", "datatype", obj_addr_str); + H5free_memory(obj_addr_str); + } } } @@ -1319,7 +1330,7 @@ attr_search(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *a } /* end attr_search() */ static herr_t -obj_search(const char *path, const H5O_info_t *oi, const char H5_ATTR_UNUSED *already_visited, void *_op_data) +obj_search(const char *path, const H5O_info2_t *oi, const char H5_ATTR_UNUSED *already_visited, void *_op_data) { trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data; const char *op_name = handle_data->op_name; @@ -1356,7 +1367,7 @@ obj_search(const char *path, const H5O_info_t *oi, const char H5_ATTR_UNUSED *al } /* end obj_search() */ static herr_t -lnk_search(const char *path, const H5L_info_t *li, void *_op_data) +lnk_search(const char *path, const H5L_info2_t *li, void *_op_data) { size_t search_len; size_t k; @@ -1415,7 +1426,7 @@ lnk_search(const char *path, const H5L_info_t *li, void *_op_data) void handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name) { - hid_t gid = -1; + hid_t gid = H5I_INVALID_HID; if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) { error_msg("unable to open root group\n"); @@ -1469,8 +1480,8 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H void handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED *data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name) { - hid_t oid = -1; - hid_t attr_id = -1; + hid_t oid = H5I_INVALID_HID; + hid_t attr_id = H5I_INVALID_HID; char *obj_name = NULL; char *attr_name = NULL; int j; @@ -1608,7 +1619,7 @@ error: void handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *display_name) { - H5O_info_t oinfo; + H5O_info2_t oinfo; hid_t dsetid; hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */ struct subset_t *sset = (struct subset_t *)data; @@ -1719,11 +1730,11 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis } /* end if */ - H5Oget_info2(dsetid, &oinfo, H5O_INFO_BASIC); + H5Oget_info3(dsetid, &oinfo, H5O_INFO_BASIC); if(oinfo.rc > 1 || hit_elink) { obj_t *found_obj; /* Found object */ - found_obj = search_obj(dset_table, oinfo.addr); + found_obj = search_obj(dset_table, &oinfo.token); if(found_obj) { if (found_obj->displayed) { @@ -1812,9 +1823,9 @@ handle_groups(hid_t fid, const char *group, void H5_ATTR_UNUSED *data, int pe, c void handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name) { - H5L_info_t linfo; + H5L_info2_t linfo; - if(H5Lget_info(fid, links, &linfo, H5P_DEFAULT) < 0) { + if(H5Lget_info2(fid, links, &linfo, H5P_DEFAULT) < 0) { error_msg("unable to get link info from \"%s\"\n", links); h5tools_setstatus(EXIT_FAILURE); } @@ -1903,8 +1914,12 @@ handle_datatypes(hid_t fid, const char *type, void H5_ATTR_UNUSED * data, int pe char name[128]; if(!type_table->objs[idx].recorded) { + char *obj_addr_string = NULL; + /* unamed datatype */ - HDsprintf(name, "/#"H5_PRINTF_HADDR_FMT, type_table->objs[idx].objno); + H5Otoken_to_str(fid, &type_table->objs[idx].obj_token, &obj_addr_string); + HDsprintf(name, "/#%s", obj_addr_string); + H5free_memory(obj_addr_string); if(!HDstrcmp(name, real_name)) break; @@ -1962,7 +1977,7 @@ static int dump_extlink(hid_t group, const char *linkname, const char *objname) { hid_t oid; - H5O_info_t oi; + H5O_info2_t oi; table_t *old_group_table = group_table; table_t *old_dset_table = dset_table; table_t *old_type_table = type_table; @@ -1974,7 +1989,7 @@ dump_extlink(hid_t group, const char *linkname, const char *objname) goto fail; /* Get object info */ - if (H5Oget_info2(oid, &oi, H5O_INFO_BASIC) < 0) { + if (H5Oget_info3(oid, &oi, H5O_INFO_BASIC) < 0) { H5Oclose(oid); goto fail; } diff --git a/tools/src/h5dump/h5dump_xml.c b/tools/src/h5dump/h5dump_xml.c index b63e68d..d9f1f67 100644 --- a/tools/src/h5dump/h5dump_xml.c +++ b/tools/src/h5dump/h5dump_xml.c @@ -106,7 +106,7 @@ static h5tool_format_t xml_dataformat = { /* internal functions */ -static int xml_name_to_XID(const char *, char *, int , int ); +static int xml_name_to_XID(hid_t, const char *, char *, int, int); /* internal functions used by XML option */ static void xml_print_datatype(hid_t, unsigned); @@ -130,7 +130,7 @@ static char *xml_escape_the_name(const char *); *------------------------------------------------------------------------- */ static herr_t -xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR_UNUSED *op_data) +xml_dump_all_cb(hid_t group, const char *name, const H5L_info2_t *linfo, void H5_ATTR_UNUSED *op_data) { hid_t obj; herr_t ret = SUCCEED; @@ -177,10 +177,10 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ HDstrcat(obj_path, name); if(linfo->type == H5L_TYPE_HARD) { - H5O_info_t oinfo; + H5O_info2_t oinfo; /* Stat the object */ - if(H5Oget_info_by_name2(group, name, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { + if(H5Oget_info_by_name3(group, name, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) { error_msg("unable to get object information for \"%s\"\n", name); h5tools_setstatus(EXIT_FAILURE); ret = FAIL; @@ -225,7 +225,7 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ if(oinfo.rc > 1 || hit_elink) { obj_t *found_obj; /* Found object */ - found_obj = search_obj(dset_table, oinfo.addr); + found_obj = search_obj(dset_table, &oinfo.token); if(found_obj == NULL) { ctx.indent_level++; @@ -272,8 +272,8 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ char pointerxid[100]; /* Create OBJ-XIDs for the parent and object */ - xml_name_to_XID(obj_path, dsetxid, (int)sizeof(dsetxid), 1); - xml_name_to_XID(prefix, parentxid, (int)sizeof(parentxid), 1); + xml_name_to_XID(obj, obj_path, dsetxid, (int)sizeof(dsetxid), 1); + xml_name_to_XID(obj, prefix, parentxid, (int)sizeof(parentxid), 1); ctx.need_prefix = TRUE; @@ -290,7 +290,7 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ t_prefix); /* H5ParentPaths */ h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); - xml_name_to_XID(found_obj->objname, pointerxid, (int)sizeof(pointerxid), 1); + xml_name_to_XID(obj, found_obj->objname, pointerxid, (int)sizeof(pointerxid), 1); ctx.indent_level++; @@ -393,11 +393,11 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ } /* end else */ /* Create OBJ-XIDs for the parent and object */ - xml_name_to_XID(t_obj_path, linkxid, (int)sizeof(linkxid), 1); - xml_name_to_XID(prefix, parentxid, (int)sizeof(parentxid), 1); + xml_name_to_XID(group, t_obj_path, linkxid, (int)sizeof(linkxid), 1); + xml_name_to_XID(group, prefix, parentxid, (int)sizeof(parentxid), 1); /* Try to create an OBJ-XID for the object pointed to */ - res = xml_name_to_XID(t_link_path, targetxid, (int)sizeof(targetxid), 0); + res = xml_name_to_XID(group, t_link_path, targetxid, (int)sizeof(targetxid), 0); if (res == 0) { /* target obj found */ ctx.need_prefix = TRUE; @@ -482,8 +482,8 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ char *t_targname = xml_escape_the_name(targname); /* Create OBJ-XIDs for the parent and object */ - xml_name_to_XID(t_obj_path, linkxid, (int)sizeof(linkxid), 1); - xml_name_to_XID(prefix, parentxid, (int)sizeof(parentxid), 1); + xml_name_to_XID(group, t_obj_path, linkxid, (int)sizeof(linkxid), 1); + xml_name_to_XID(group, prefix, parentxid, (int)sizeof(parentxid), 1); ctx.need_prefix = TRUE; @@ -528,8 +528,8 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ char *t_obj_path = xml_escape_the_name(obj_path); /* Create OBJ-XIDs for the parent and object */ - xml_name_to_XID(t_obj_path, linkxid, (int)sizeof(linkxid), 1); - xml_name_to_XID(prefix, parentxid, (int)sizeof(parentxid), 1); + xml_name_to_XID(group, t_obj_path, linkxid, (int)sizeof(linkxid), 1); + xml_name_to_XID(group, prefix, parentxid, (int)sizeof(parentxid), 1); ctx.need_prefix = TRUE; @@ -575,20 +575,26 @@ done: * 1 - generate a fake entry and return fake id. */ int -xml_name_to_XID(const char *str , char *outstr, int outlen, int gen) +xml_name_to_XID(hid_t loc_id, const char *str, char *outstr, int outlen, int gen) { - haddr_t objno; /* Object ID for object at path */ + H5O_token_t obj_token; + char *obj_addr_str = NULL; + int lookup_ret; if (outlen < 22) return 1; - objno = ref_path_table_lookup(str); - if (objno == HADDR_UNDEF) { + lookup_ret = ref_path_table_lookup(str, &obj_token); + if (lookup_ret < 0) { if (HDstrlen(str) == 0) { - objno = ref_path_table_lookup("/"); - if (objno == HADDR_UNDEF) { + lookup_ret = ref_path_table_lookup("/", &obj_token); + if (lookup_ret < 0) { if (gen) { - objno = ref_path_table_gen_fake(str); - HDsprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno); + ref_path_table_gen_fake(str, &obj_token); + + H5Otoken_to_str(loc_id, &obj_token, &obj_addr_str); + HDsprintf(outstr, "xid_%s", obj_addr_str); + H5free_memory(obj_addr_str); + return 0; } else { @@ -598,8 +604,12 @@ xml_name_to_XID(const char *str , char *outstr, int outlen, int gen) } else { if (gen) { - objno = ref_path_table_gen_fake(str); - HDsprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno); + ref_path_table_gen_fake(str, &obj_token); + + H5Otoken_to_str(loc_id, &obj_token, &obj_addr_str); + HDsprintf(outstr, "xid_%s", obj_addr_str); + H5free_memory(obj_addr_str); + return 0; } else { @@ -608,7 +618,9 @@ xml_name_to_XID(const char *str , char *outstr, int outlen, int gen) } } - HDsprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno); + H5Otoken_to_str(loc_id, &obj_token, &obj_addr_str); + HDsprintf(outstr, "xid_%s", obj_addr_str); + H5free_memory(obj_addr_str); return 0; } @@ -878,12 +890,12 @@ xml_print_datatype(hid_t type, unsigned in_group) outputformat = &string_dataformat; if(!in_group && H5Tcommitted(type) > 0) { - H5O_info_t oinfo; + H5O_info2_t oinfo; obj_t *found_obj; /* Found object */ /* detect a shared datatype, output only once */ - H5Oget_info2(type, &oinfo, H5O_INFO_BASIC); - found_obj = search_obj(type_table, oinfo.addr); + H5Oget_info3(type, &oinfo, H5O_INFO_BASIC); + found_obj = search_obj(type_table, &oinfo.token); if(found_obj) { /* This should be defined somewhere else */ @@ -891,7 +903,7 @@ xml_print_datatype(hid_t type, unsigned in_group) probably will have something different eventually */ char * dtxid = (char *)HDmalloc((size_t)100); - xml_name_to_XID(found_obj->objname, dtxid, 100, 1); + xml_name_to_XID(type, found_obj->objname, dtxid, 100, 1); if (!found_obj->recorded) { /* 'anonymous' NDT. Use it's object num. as it's name. */ @@ -1531,19 +1543,19 @@ xml_dump_datatype(hid_t type) dump_indent += COL; if(H5Tcommitted(type) > 0) { - H5O_info_t oinfo; + H5O_info2_t oinfo; obj_t *found_obj; /* Found object */ /* Datatype is a shared or named datatype */ - H5Oget_info2(type, &oinfo, H5O_INFO_BASIC); - found_obj = search_obj(type_table, oinfo.addr); + H5Oget_info3(type, &oinfo, H5O_INFO_BASIC); + found_obj = search_obj(type_table, &oinfo.token); if(found_obj) { /* Shared datatype, must be entered as an object */ /* These 2 cases are the same now, but may change */ char *dtxid = (char *)HDmalloc((size_t)100); - xml_name_to_XID(found_obj->objname, dtxid, 100, 1); + xml_name_to_XID(type, found_obj->objname, dtxid, 100, 1); if (!found_obj->recorded) { /* anonymous stored datatype: following the dumper's current @@ -1783,15 +1795,10 @@ xml_dump_dataspace(hid_t space) void xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED *sset, int H5_ATTR_UNUSED pindex) { - hid_t space = -1; - hid_t type = -1; - hid_t p_type = -1; - hsize_t size[64]; - hsize_t nelmts = 1; - int ndims; - int i; + hid_t space = H5I_INVALID_HID; + hid_t type = H5I_INVALID_HID; + hid_t p_type = H5I_INVALID_HID; int status = -1; - void *buf = NULL; hsize_t curr_pos = 0; /* total data element position */ h5tools_str_t buffer; /* string into which to render */ h5tools_context_t ctx; /* print context */ @@ -1950,9 +1957,9 @@ herr_t xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *info, void H5_ATTR_UNUSED * op_data) { - hid_t attr_id = -1; - hid_t type = -1; - hid_t space = -1; + hid_t attr_id = H5I_INVALID_HID; + hid_t type = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; H5S_class_t space_type; hsize_t curr_pos = 0; /* total data element position */ h5tools_str_t buffer; /* string into which to render */ @@ -2293,8 +2300,8 @@ xml_dump_named_datatype(hid_t type, const char *name) t_prefix = xml_escape_the_name(prefix); t_name = xml_escape_the_name(name); - xml_name_to_XID(tmp, dtxid, 100, 1); - xml_name_to_XID(prefix, parentxid, 100, 1); + xml_name_to_XID(type, tmp, dtxid, 100, 1); + xml_name_to_XID(type, prefix, parentxid, 100, 1); if(HDstrncmp(name, "#", (size_t)1) == 0) { /* Special: this is an 'anonymous' NDT, deleted but still in use. @@ -2317,7 +2324,7 @@ xml_dump_named_datatype(hid_t type, const char *name) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); } else { - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ ctx.need_prefix = TRUE; @@ -2331,12 +2338,12 @@ xml_dump_named_datatype(hid_t type, const char *name) h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); /* Check uniqueness of named datatype */ - H5Oget_info2(type, &oinfo, H5O_INFO_BASIC); + H5Oget_info3(type, &oinfo, H5O_INFO_BASIC); if(oinfo.rc > 1) { obj_t *found_obj; /* Found object */ /* Group with more than one link to it... */ - found_obj = search_obj(type_table, oinfo.addr); + found_obj = search_obj(type_table, &oinfo.token); if (found_obj == NULL) { indentation(dump_indent); @@ -2353,7 +2360,7 @@ xml_dump_named_datatype(hid_t type, const char *name) ctx.indent_level++; - xml_name_to_XID(found_obj->objname, pointerxid, (int)sizeof(pointerxid), 1); + xml_name_to_XID(type, found_obj->objname, pointerxid, (int)sizeof(pointerxid), 1); ctx.need_prefix = TRUE; @@ -2436,7 +2443,7 @@ done: void xml_dump_group(hid_t gid, const char *name) { - H5O_info_t oinfo; + H5O_info2_t oinfo; hid_t gcpl_id; hid_t dset, type; unsigned crt_order_flags; @@ -2517,13 +2524,13 @@ xml_dump_group(hid_t gid, const char *name) } } - H5Oget_info2(gid, &oinfo, H5O_INFO_BASIC); + H5Oget_info3(gid, &oinfo, H5O_INFO_BASIC); if(oinfo.rc > 1) { obj_t *found_obj; /* Found object */ /* Group with more than one link to it... */ - found_obj = search_obj(group_table, oinfo.addr); + found_obj = search_obj(group_table, &oinfo.token); if (found_obj == NULL) { indentation(dump_indent); @@ -2541,7 +2548,7 @@ xml_dump_group(hid_t gid, const char *name) /* already seen: enter a groupptr */ if(isRoot) { /* probably can't happen! */ - xml_name_to_XID("/", grpxid, 100, 1); + xml_name_to_XID(gid, "/", grpxid, 100, 1); ctx.need_prefix = TRUE; @@ -2554,8 +2561,8 @@ xml_dump_group(hid_t gid, const char *name) else { t_objname = xml_escape_the_name(found_obj->objname); par_name = xml_escape_the_name(par); - xml_name_to_XID(tmp, grpxid, 100, 1); - xml_name_to_XID(par, parentxid, 100, 1); + xml_name_to_XID(gid, tmp, grpxid, 100, 1); + xml_name_to_XID(gid, par, parentxid, 100, 1); ctx.need_prefix = TRUE; @@ -2573,8 +2580,8 @@ xml_dump_group(hid_t gid, const char *name) t_objname = xml_escape_the_name(found_obj->objname);/* point to the NDT by name */ par_name = xml_escape_the_name(par); - xml_name_to_XID(found_obj->objname, ptrstr, 100, 1); - xml_name_to_XID(par, parentxid, 100, 1); + xml_name_to_XID(gid, found_obj->objname, ptrstr, 100, 1); + xml_name_to_XID(gid, par, parentxid, 100, 1); ctx.need_prefix = TRUE; @@ -2597,7 +2604,7 @@ xml_dump_group(hid_t gid, const char *name) /* first time this group has been seen -- describe it */ if(isRoot) { - xml_name_to_XID("/", grpxid, 100, 1); + xml_name_to_XID(gid, "/", grpxid, 100, 1); ctx.need_prefix = TRUE; @@ -2611,8 +2618,8 @@ xml_dump_group(hid_t gid, const char *name) char *t_tmp = xml_escape_the_name(tmp); par_name = xml_escape_the_name(par); - xml_name_to_XID(tmp, grpxid, 100, 1); - xml_name_to_XID(par, parentxid, 100, 1); + xml_name_to_XID(gid, tmp, grpxid, 100, 1); + xml_name_to_XID(gid, par, parentxid, 100, 1); ctx.need_prefix = TRUE; @@ -2652,9 +2659,15 @@ xml_dump_group(hid_t gid, const char *name) /* Very special case: dump unamed type in root group */ for(u = 0; u < type_table->nobjs; u++) { if(!type_table->objs[u].recorded) { + char *obj_addr_str = NULL; + dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT); type = H5Dget_type(dset); - HDsprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno); + + H5Otoken_to_str(dset, &type_table->objs[u].obj_token, &obj_addr_str); + HDsprintf(type_name, "#%s", obj_addr_str); + H5free_memory(obj_addr_str); + dump_function_table->dump_named_datatype_function(type, type_name); H5Tclose(type); H5Dclose(dset); @@ -2665,9 +2678,9 @@ xml_dump_group(hid_t gid, const char *name) /* iterate through all the links */ if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED)) - H5Literate(gid, sort_by, sort_order, NULL, xml_dump_all_cb, NULL); + H5Literate2(gid, sort_by, sort_order, NULL, xml_dump_all_cb, NULL); else - H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, xml_dump_all_cb, NULL); + H5Literate2(gid, H5_INDEX_NAME, sort_order, NULL, xml_dump_all_cb, NULL); dump_indent -= COL; ctx.indent_level--; @@ -2689,15 +2702,15 @@ xml_dump_group(hid_t gid, const char *name) h5tools_str_reset(&buffer); if(isRoot) { - xml_name_to_XID("/", grpxid, 100, 1); + xml_name_to_XID(gid, "/", grpxid, 100, 1); h5tools_str_append(&buffer, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">", xmlnsprefix, grpxid, "/"); } else { char *t_tmp = xml_escape_the_name(tmp); par_name = xml_escape_the_name(par); - xml_name_to_XID(tmp, grpxid, 100, 1); - xml_name_to_XID(par, parentxid, 100, 1); + xml_name_to_XID(gid, tmp, grpxid, 100, 1); + xml_name_to_XID(gid, par, parentxid, 100, 1); h5tools_str_append(&buffer, "<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" " "Parents=\"%s\" H5ParentPaths=\"%s\" >", xmlnsprefix, t_name, grpxid, t_tmp, parentxid, par_name); @@ -2734,9 +2747,15 @@ xml_dump_group(hid_t gid, const char *name) /* Very special case: dump unamed type in root group */ for(u = 0; u < type_table->nobjs; u++) { if(!type_table->objs[u].recorded) { + char *obj_addr_str = NULL; + dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT); type = H5Dget_type(dset); - HDsprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno); + + H5Otoken_to_str(dset, &type_table->objs[u].obj_token, &obj_addr_str); + HDsprintf(type_name, "#%s", obj_addr_str); + H5free_memory(obj_addr_str); + dump_function_table->dump_named_datatype_function(type, type_name); H5Tclose(type); H5Dclose(dset); @@ -2747,9 +2766,9 @@ xml_dump_group(hid_t gid, const char *name) /* iterate through all the links */ if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED)) - H5Literate(gid, sort_by, sort_order, NULL, xml_dump_all_cb, NULL); + H5Literate2(gid, sort_by, sort_order, NULL, xml_dump_all_cb, NULL); else - H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, xml_dump_all_cb, NULL); + H5Literate2(gid, H5_INDEX_NAME, sort_order, NULL, xml_dump_all_cb, NULL); dump_indent -= COL; ctx.indent_level--; @@ -2787,12 +2806,11 @@ static int xml_print_refs(hid_t did, int source) { herr_t e; - hid_t type = -1; - hid_t space = -1; + hid_t type = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; hssize_t ssiz = -1; hsize_t i; - size_t tsiz; - hobj_ref_t *refbuf = NULL; + H5R_ref_t *refbuf = NULL; char *buf = NULL; h5tools_str_t buffer; /* string into which to render */ h5tools_context_t ctx; /* print context */ @@ -2823,13 +2841,11 @@ xml_print_refs(hid_t did, int source) space = H5Dget_space(did); if ((ssiz = H5Sget_simple_extent_npoints(space)) < 0) goto error; - if ((tsiz = H5Tget_size(type)) == 0) - goto error; - buf = (char *) HDcalloc((size_t)ssiz, tsiz); + buf = (char *) HDcalloc((size_t)ssiz, sizeof(H5R_ref_t)); if (buf == NULL) goto error; - e = H5Dread(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + e = H5Dread(did, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); /* need to check result here */ if (e < 0) goto error; @@ -2838,19 +2854,17 @@ xml_print_refs(hid_t did, int source) space = H5Aget_space(did); if ((ssiz = H5Sget_simple_extent_npoints(space)) < 0) goto error; - if ((tsiz = H5Tget_size(type)) == 0) - goto error; - buf = (char *) HDcalloc((size_t)ssiz, tsiz); + buf = (char *) HDcalloc((size_t)ssiz, sizeof(H5R_ref_t)); if (buf == NULL) goto error; - e = H5Aread(did, H5T_STD_REF_OBJ, buf); + e = H5Aread(did, H5T_STD_REF, buf); /* need to check the result here */ if (e < 0) goto error; } - refbuf = (hobj_ref_t *)((void *)buf); + refbuf = (H5R_ref_t *)((void *)buf); /* setup */ HDmemset(&buffer, 0, sizeof(h5tools_str_t)); @@ -2901,6 +2915,8 @@ xml_print_refs(hid_t did, int source) } ctx.indent_level--; + H5Rdestroy(refbuf); + refbuf++; } @@ -2936,8 +2952,8 @@ static int xml_print_strs(hid_t did, int source) { herr_t e; - hid_t type = -1; - hid_t space = -1; + hid_t type = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; hssize_t ssiz = -1; htri_t is_vlstr = FALSE; size_t tsiz = 0; @@ -3290,7 +3306,7 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) H5Pget_fill_value(dcpl, type, buf); if (H5Tget_class(type) == H5T_REFERENCE) { - const char * path = lookup_ref_path(*(hobj_ref_t *) buf); + const char * path = lookup_ref_path(*(H5R_ref_t *) buf); ctx.need_prefix = TRUE; @@ -3324,6 +3340,8 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix); h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); + + H5Rdestroy((H5R_ref_t *) buf); } else if (H5Tget_class(type) == H5T_STRING) { /* ????? */ @@ -3610,8 +3628,8 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED *ss string_dataformat.do_escape = display_escape; outputformat = &string_dataformat; - xml_name_to_XID(tmp, rstr, 100, 1); - xml_name_to_XID(prefix, pstr, 100, 1); + xml_name_to_XID(did, tmp, rstr, 100, 1); + xml_name_to_XID(did, prefix, pstr, 100, 1); ctx.need_prefix = TRUE; @@ -4121,7 +4139,7 @@ xml_print_enum(hid_t type) unsigned char *value = NULL; /*value array */ unsigned nmembs; /*number of members */ hid_t super; /*enum base integer type */ - hid_t native = -1; /*native integer datatype */ + hid_t native = H5I_INVALID_HID; /*native integer datatype */ size_t dst_size; /*destination value type size */ unsigned i; /*miscellaneous counters */ size_t j; diff --git a/tools/src/h5format_convert/h5format_convert.c b/tools/src/h5format_convert/h5format_convert.c index 257a047..bb606ac 100644 --- a/tools/src/h5format_convert/h5format_convert.c +++ b/tools/src/h5format_convert/h5format_convert.c @@ -219,8 +219,8 @@ leave(int ret) static int convert(hid_t fid, const char *dname) { - hid_t dcpl = -1; - hid_t did = -1; + hid_t dcpl = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; H5D_layout_t layout_type; H5D_chunk_index_t idx_type; @@ -362,7 +362,7 @@ error: *------------------------------------------------------------------------- */ static int -convert_dsets_cb(const char *path, const H5O_info_t *oi, const char *already_visited, void *_fid) +convert_dsets_cb(const char *path, const H5O_info2_t *oi, const char *already_visited, void *_fid) { hid_t fid = *(hid_t *)_fid; @@ -399,7 +399,7 @@ main(int argc, const char *argv[]) { H5E_auto2_t func; void *edata; - hid_t fid = -1; + hid_t fid = H5I_INVALID_HID; h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); diff --git a/tools/src/h5import/h5import.c b/tools/src/h5import/h5import.c index bd1689f..fc4d431 100644 --- a/tools/src/h5import/h5import.c +++ b/tools/src/h5import/h5import.c @@ -72,7 +72,7 @@ uint64_t swap_uint64(uint64_t val); int main(int argc, char *argv[]) { - struct Options opt; + struct Options *opt; int outfile_named = FALSE; int token; int i; @@ -99,8 +99,8 @@ int main(int argc, char *argv[]) (void) HDsetvbuf(stderr, (char *) NULL, _IOLBF, 0); (void) HDsetvbuf(stdout, (char *) NULL, _IOLBF, 0); - /* Initialize the file structure to 0 */ - HDmemset(&opt, 0, sizeof(struct Options)); + if((opt = (struct Options *)HDcalloc(1, sizeof(struct Options))) == NULL) + goto err; if (argv[1] && (HDstrcmp("-V", argv[1]) == 0)) { print_version(PROGRAMNAME); @@ -130,12 +130,12 @@ int main(int argc, char *argv[]) switch (state) { case 1: /* counting input files */ - if (opt.fcount < 29) { - (void) HDstrcpy(opt.infiles[opt.fcount].datafile, argv[i]); - in = &(opt.infiles[opt.fcount].in); - opt.infiles[opt.fcount].config = 0; - setDefaultValues(in, opt.fcount); - opt.fcount++; + if (opt->fcount < 29) { + (void) HDstrcpy(opt->infiles[opt->fcount].datafile, argv[i]); + in = &(opt->infiles[opt->fcount].in); + opt->infiles[opt->fcount].config = 0; + setDefaultValues(in, opt->fcount); + opt->fcount++; } else { (void) HDfprintf(stderr, err9, argv[i]); @@ -148,8 +148,8 @@ int main(int argc, char *argv[]) break; case 3: /* get configfile name */ - (void) HDstrcpy(opt.infiles[opt.fcount-1].configfile, argv[i]); - opt.infiles[opt.fcount - 1].config = 1; + (void) HDstrcpy(opt->infiles[opt->fcount-1].configfile, argv[i]); + opt->infiles[opt->fcount - 1].config = 1; break; case 4: /* -o found; look for outfile */ @@ -160,7 +160,7 @@ int main(int argc, char *argv[]) (void) HDfprintf(stderr, err10, argv[i]); goto err; } - (void) HDstrcpy(opt.outfile, argv[i]); + (void) HDstrcpy(opt->outfile, argv[i]); outfile_named = TRUE; break; @@ -232,11 +232,11 @@ int main(int argc, char *argv[]) goto err; } - if (process(&opt) == -1) + if (process(opt) == -1) goto err; - for (i = 0; i < opt.fcount; i++) { - in = &(opt.infiles[i].in); + for (i = 0; i < opt->fcount; i++) { + in = &(opt->infiles[i].in); if (in->sizeOfDimension) HDfree(in->sizeOfDimension); if (in->sizeOfChunk) @@ -248,12 +248,13 @@ int main(int argc, char *argv[]) if (in->data) HDfree(in->data); } + HDfree(opt); - return (EXIT_SUCCESS); + return EXIT_SUCCESS; err: (void) HDfprintf(stderr, "%s", err4); - for (i = 0; i < opt.fcount; i++) { - in = &(opt.infiles[i].in); + for (i = 0; i < opt->fcount; i++) { + in = &(opt->infiles[i].in); if (in->sizeOfDimension) HDfree(in->sizeOfDimension); if (in->sizeOfChunk) @@ -265,7 +266,9 @@ err: if (in->data) HDfree(in->data); } - return (EXIT_FAILURE); + HDfree(opt); + + return EXIT_FAILURE; } static int gtoken(char *s) @@ -1086,12 +1089,12 @@ out: */ static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id) { - hid_t group_id = -1; - hid_t dset_id = -1; - hid_t space_id = -1; - hid_t mspace_id = -1; - hid_t type_id = -1; - hid_t handle = -1; + hid_t group_id = H5I_INVALID_HID; + hid_t dset_id = H5I_INVALID_HID; + hid_t space_id = H5I_INVALID_HID; + hid_t mspace_id = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + hid_t handle = H5I_INVALID_HID; char *str1 = NULL; char *str2 = NULL; char *str3 = NULL; @@ -4725,15 +4728,15 @@ uint32_t swap_uint32(uint32_t val) int32_t swap_int32(int32_t val) { - val = ((val << 8) & 0xFF00FF00) | ((val >> 8) & 0xFF00FF); + val = (int32_t)(((uint32_t)(val << 8) & 0xFF00FF00) | ((val >> 8) & 0xFF00FF)); return (val << 16) | ((val >> 16) & 0xFFFF); } int64_t swap_int64(int64_t val) { - val = ((val << 8) & 0xFF00FF00FF00FF00ULL) | ((val >> 8) & 0x00FF00FF00FF00FFULL); - val = ((val << 16) & 0xFFFF0000FFFF0000ULL) | ((val >> 16) & 0x0000FFFF0000FFFFULL); - return (val << 32) | ((val >> 32) & 0xFFFFFFFFULL); + val = (int64_t)(((uint64_t)(val << 8) & 0xFF00FF00FF00FF00ULL) | ((uint64_t)(val >> 8) & 0x00FF00FF00FF00FFULL)); + val = (int64_t)(((uint64_t)(val << 16) & 0xFFFF0000FFFF0000ULL) | ((uint64_t)(val >> 16) & 0x0000FFFF0000FFFFULL)); + return (int64_t)((uint64_t)(val << 32) | ((uint64_t)(val >> 32) & 0xFFFFFFFFULL)); } uint64_t swap_uint64(uint64_t val) diff --git a/tools/src/h5jam/h5jam.c b/tools/src/h5jam/h5jam.c index 8222e06..07797c8 100644 --- a/tools/src/h5jam/h5jam.c +++ b/tools/src/h5jam/h5jam.c @@ -197,8 +197,8 @@ main (int argc, const char *argv[]) int ofid = -1; void *edata; H5E_auto2_t func; - hid_t ifile = -1; - hid_t plist = -1; + hid_t ifile = H5I_INVALID_HID; + hid_t plist = H5I_INVALID_HID; herr_t status; htri_t testval; hsize_t usize; diff --git a/tools/src/h5jam/h5unjam.c b/tools/src/h5jam/h5unjam.c index aa893f9..203522b 100644 --- a/tools/src/h5jam/h5unjam.c +++ b/tools/src/h5jam/h5unjam.c @@ -199,8 +199,8 @@ main(int argc, const char *argv[]) { void *edata; H5E_auto2_t func; - hid_t ifile = -1; - hid_t plist = -1; + hid_t ifile = H5I_INVALID_HID; + hid_t plist = H5I_INVALID_HID; off_t fsize; hsize_t usize; htri_t testval; diff --git a/tools/src/h5ls/h5ls.c b/tools/src/h5ls/h5ls.c index 03e7bed..3dfbb49 100644 --- a/tools/src/h5ls/h5ls.c +++ b/tools/src/h5ls/h5ls.c @@ -879,7 +879,7 @@ print_enum_type(h5tools_str_t *buffer, hid_t type, int ind) if (nmembs > 0) { char **name; /* member names */ unsigned char *value; /* value array */ - hid_t native = -1; /* native integer data type */ + hid_t native = H5I_INVALID_HID; /* native integer data type */ size_t dst_size; /* destination value type size */ unsigned i; /* miscellaneous counters */ @@ -1260,10 +1260,17 @@ print_type(h5tools_str_t *buffer, hid_t type, int ind) /* Shared? If so then print the type's OID */ if (H5Tcommitted(type)) { - H5O_info_t oi; + H5O_info2_t oi; - if (H5Oget_info2(type, &oi, H5O_INFO_BASIC) >= 0) - h5tools_str_append(buffer,"shared-%lu:"H5_PRINTF_HADDR_FMT" ", oi.fileno, oi.addr); + if (H5Oget_info3(type, &oi, H5O_INFO_BASIC) >= 0) { + char *type_string = NULL; + + H5Otoken_to_str(type, &oi.token, &type_string); + + h5tools_str_append(buffer,"shared-%lu:%s", oi.fileno, type_string); + + H5free_memory(type_string); + } /* end if */ else h5tools_str_append(buffer,"shared "); } /* end if */ @@ -1300,7 +1307,7 @@ dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx h5tools_str_t buffer; /* string into which to render */ h5tools_context_t datactx; /* print context */ - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); datactx = *ctx; /* print context */ /* Assume entire data space to be printed */ @@ -1506,7 +1513,7 @@ dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx PRINTVALSTREAM(stream, "\n"); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); } /*------------------------------------------------------------------------- @@ -1535,7 +1542,7 @@ dump_dataset_values(hid_t dset) h5tool_format_t *info = &ls_dataformat; H5R_ref_t *ref_buf = NULL; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); f_type = H5Dget_type(dset); space = H5Dget_space(dset); @@ -1649,7 +1656,7 @@ dump_dataset_values(hid_t dset) init_acc_pos(&ctx, total_size); ctx.need_prefix = TRUE; - if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), ndims))) { + if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) { H5TOOLS_DEBUG("H5Dread reference read"); if(H5Dread(dset, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, ref_buf) < 0) { HDfree(ref_buf); @@ -1675,7 +1682,7 @@ done: PRINTVALSTREAM(rawoutstream, "\n"); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); } @@ -1688,7 +1695,7 @@ done: *------------------------------------------------------------------------- */ static void -dump_attribute_values(hid_t attr, const char *attr_name) +dump_attribute_values(hid_t attr) { hid_t f_type = H5I_INVALID_HID; hid_t space = H5I_INVALID_HID; @@ -1705,7 +1712,7 @@ dump_attribute_values(hid_t attr, const char *attr_name) h5tool_format_t *info = &ls_dataformat; H5R_ref_t *ref_buf = NULL; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); f_type = H5Aget_type(attr); space = H5Aget_space(attr); @@ -1820,7 +1827,7 @@ dump_attribute_values(hid_t attr, const char *attr_name) init_acc_pos(&ctx, total_size); ctx.need_prefix = TRUE; - if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), ndims))) { + if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) { H5TOOLS_DEBUG("H5Aread reference read"); if(H5Aread(attr, H5T_STD_REF, ref_buf) < 0) { HDfree(ref_buf); @@ -1852,7 +1859,7 @@ done: PRINTVALSTREAM(rawoutstream, "\n"); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); } /*------------------------------------------------------------------------- @@ -1881,7 +1888,7 @@ list_attr(hid_t obj, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ain h5tools_context_t ctx; /* print context */ h5tool_format_t *info = &ls_dataformat; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); @@ -1948,14 +1955,14 @@ list_attr(hid_t obj, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ain h5tools_str_close(&buffer); if (data_g) - dump_attribute_values(attr, attr_name); + dump_attribute_values(attr); H5Aclose(attr); } else { H5TOOLS_DEBUG("Attribute open failed"); h5tools_str_close(&buffer); } - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return 0; } @@ -2284,7 +2291,7 @@ datatype_list2(hid_t type, const char H5_ATTR_UNUSED *name) *------------------------------------------------------------------------- */ static herr_t -list_obj(const char *name, const H5O_info_t *oinfo, const char *first_seen, void *_iter) +list_obj(const char *name, const H5O_info2_t *oinfo, const char *first_seen, void *_iter) { H5O_type_t obj_type = oinfo->type; /* Type of the object */ iter_t *iter = (iter_t*)_iter; @@ -2293,7 +2300,7 @@ list_obj(const char *name, const H5O_info_t *oinfo, const char *first_seen, void h5tools_context_t ctx; /* print context */ h5tool_format_t *info = &ls_dataformat; - H5TOOLS_DEBUG("enter"); + H5TOOLS_START_DEBUG(""); HDmemset(&ctx, 0, sizeof(ctx)); HDmemset(&buffer, 0, sizeof(h5tools_str_t)); @@ -2355,6 +2362,7 @@ list_obj(const char *name, const H5O_info_t *oinfo, const char *first_seen, void if (verbose_g > 0) { size_t buf_size = 0; char* comment = NULL; + char* obj_addr_str = NULL; ssize_t cmt_bufsize = -1; /* Display attributes */ @@ -2363,11 +2371,15 @@ list_obj(const char *name, const H5O_info_t *oinfo, const char *first_seen, void H5Aiterate2(obj, H5_INDEX_NAME, H5_ITER_INC, NULL, list_attr, NULL); /* Object location & reference count */ + H5Otoken_to_str(obj, &oinfo->token, &obj_addr_str); + h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " %-10s %lu:"H5_PRINTF_HADDR_FMT"\n", "Location:", oinfo->fileno, oinfo->addr); + h5tools_str_append(&buffer, " %-10s %lu:%s\n", "Location:", oinfo->fileno, obj_addr_str); h5tools_str_append(&buffer, " %-10s %u\n", "Links:", (unsigned)oinfo->rc); h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); + H5free_memory(obj_addr_str); + /* Modification time */ if (oinfo->mtime > 0) { char buf[256]; @@ -2426,7 +2438,7 @@ done: } h5tools_str_close(&buffer); - H5TOOLS_ENDDEBUG("exit"); + H5TOOLS_ENDDEBUG(""); return 0; } /* end list_obj() */ @@ -2442,7 +2454,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) +list_lnk(const char *name, const H5L_info2_t *linfo, void *_iter) { char *buf = NULL; iter_t *iter = (iter_t*)_iter; @@ -2628,7 +2640,7 @@ static herr_t visit_obj(hid_t file, const char *oname, iter_t *iter) { int retval = 0; - H5O_info_t oi; /* Information for object */ + H5O_info2_t oi; /* Information for object */ hsize_t curr_pos = 0; /* total data element position */ h5tools_str_t buffer; /* string into which to render */ h5tools_context_t ctx; /* print context */ @@ -2640,7 +2652,7 @@ visit_obj(hid_t file, const char *oname, iter_t *iter) h5tools_str_reset(&buffer); /* Retrieve info for object to list */ - if (H5Oget_info_by_name2(file, oname, &oi, H5O_INFO_BASIC|H5O_INFO_TIME, H5P_DEFAULT) < 0) { + if (H5Oget_info_by_name3(file, oname, &oi, H5O_INFO_BASIC|H5O_INFO_TIME, H5P_DEFAULT) < 0) { if (iter->symlink_target) { h5tools_str_append(&buffer, "{**NOT FOUND**}\n"); iter->symlink_target = FALSE; @@ -2821,7 +2833,7 @@ leave(int ret) int main(int argc, const char *argv[]) { - hid_t file = H5I_INVALID_HID; + hid_t file_id = H5I_INVALID_HID; char *fname = NULL, *oname = NULL, *x; const char *s = NULL; char *rest; @@ -3279,24 +3291,24 @@ main(int argc, const char *argv[]) * doesn't exist). */ show_file_name_g = (argc-argno > 1); /*show file names if more than one*/ while(argno < argc) { - H5L_info_t li; + H5L_info2_t li; iter_t iter; symlink_trav_t symlink_list; size_t u; fname = HDstrdup(argv[argno++]); oname = NULL; - file = -1; + file_id = H5I_INVALID_HID; while (fname && *fname) { if (fapl_id != H5P_DEFAULT) { - file = H5Fopen(fname, H5F_ACC_RDONLY, fapl_id); + file_id = H5Fopen(fname, H5F_ACC_RDONLY, fapl_id); } else { - file = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, preferred_driver, drivername, sizeof drivername); + file_id = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, preferred_driver, drivername, sizeof drivername); } - if (file >= 0) { + if (file_id >= 0) { if (verbose_g) PRINTSTREAM(rawoutstream, "Opened \"%s\" with %s driver.\n", fname, drivername); break; /*success*/ @@ -3312,7 +3324,7 @@ main(int argc, const char *argv[]) *oname = '\0'; } /* end while */ - if (file < 0) { + if (file_id < 0) { HDfprintf(rawerrorstream, "%s: unable to open file\n", argv[argno-1]); HDfree(fname); err_exit = 1; @@ -3347,8 +3359,8 @@ main(int argc, const char *argv[]) /* Remember the file information for later */ iter.fname = fname; - iter.fid = file; - iter.gid = -1; + iter.fid = file_id; + iter.gid = H5I_INVALID_HID; iter.symlink_target = FALSE; iter.symlink_list = &symlink_list; iter.symlink_list->dangle_link = FALSE; @@ -3360,7 +3372,7 @@ main(int argc, const char *argv[]) /* Check for root group as object name */ if (HDstrcmp(oname, root_name)) { /* Check the type of link given */ - if (H5Lget_info(file, oname, &li, H5P_DEFAULT) < 0) { + if (H5Lget_info2(file_id, oname, &li, H5P_DEFAULT) < 0) { hsize_t curr_pos = 0; /* total data element position */ h5tools_str_t buffer; /* string into which to render */ h5tools_context_t ctx; /* print context */ @@ -3381,18 +3393,18 @@ main(int argc, const char *argv[]) /* Open the object and display it's information */ if (li.type == H5L_TYPE_HARD) { - if (visit_obj(file, oname, &iter) < 0) { + if (visit_obj(file_id, oname, &iter) < 0) { H5Eset_auto2(H5E_DEFAULT, func, edata); leave(EXIT_FAILURE); } } /* end if(li.type == H5L_TYPE_HARD) */ else { /* Specified name is not for object -- list that link */ - /* Use file ID for root group ID */ - iter.gid = file; + /* Use file_id ID for root group ID */ + iter.gid = file_id; list_lnk(oname, &li, &iter); } - H5Fclose(file); + H5Fclose(file_id); HDfree(fname); if (x) HDfree(oname); diff --git a/tools/src/h5repack/h5repack.c b/tools/src/h5repack/h5repack.c index 6f0e4eb..8eeaa0e 100644 --- a/tools/src/h5repack/h5repack.c +++ b/tools/src/h5repack/h5repack.c @@ -222,18 +222,27 @@ h5repack_addlayout(const char *str, pack_opt_t *options) hid_t copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, trav_table_t *travt, pack_opt_t *options) { - named_dt_t *dt = *named_dt_head_p; /* Stack pointer */ - named_dt_t *dt_ret = NULL; /* Datatype to return */ - H5O_info_t oinfo; /* Object info of input dtype */ - hid_t ret_value = H5I_INVALID_HID; + named_dt_t *dt = *named_dt_head_p; /* Stack pointer */ + named_dt_t *dt_ret = NULL; /* Datatype to return */ + H5O_info2_t oinfo; /* Object info of input dtype */ + int token_cmp; + hid_t ret_value = H5I_INVALID_HID; - if (H5Oget_info2(type_in, &oinfo, H5O_INFO_BASIC) < 0) + if (H5Oget_info3(type_in, &oinfo, H5O_INFO_BASIC) < 0) H5TOOLS_GOTO_ERROR(H5I_INVALID_HID, "H5Oget_info failed"); if (*named_dt_head_p) { + if (H5Otoken_cmp(type_in, &dt->obj_token, &oinfo.token, &token_cmp) < 0) + H5TOOLS_GOTO_ERROR(H5I_INVALID_HID, "failed to compare object tokens"); + /* Stack already exists, search for the datatype */ - while (dt && dt->addr_in != oinfo.addr) + while (dt && token_cmp) { dt = dt->next; + + if (H5Otoken_cmp(type_in, &dt->obj_token, &oinfo.token, &token_cmp) < 0) + H5TOOLS_GOTO_ERROR(H5I_INVALID_HID, "failed to compare object tokens"); + } + dt_ret = dt; } else { @@ -249,13 +258,14 @@ copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, t *named_dt_head_p = dt; /* Update the address and id */ - dt->addr_in = travt->objs[i].objno; - dt->id_out = -1; + HDmemcpy(&dt->obj_token, &travt->objs[i].obj_token, sizeof(H5O_token_t)); + dt->id_out = H5I_INVALID_HID; /* Check if this type is the one requested */ - if (oinfo.addr == dt->addr_in) { + if (H5Otoken_cmp(type_in, &oinfo.token, &dt->obj_token, &token_cmp) < 0) + H5TOOLS_GOTO_ERROR(H5I_INVALID_HID, "failed to compare object tokens"); + if (!token_cmp) dt_ret = dt; - } } /* end if named datatype */ } /* end for each object in traversal table */ } /* end else (create the stack) */ @@ -271,8 +281,8 @@ copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, t *named_dt_head_p = dt_ret; /* Update the address and id */ - dt_ret->addr_in = oinfo.addr; - dt_ret->id_out = -1; + HDmemcpy(&dt_ret->obj_token, &oinfo.token, sizeof(H5O_token_t)); + dt_ret->id_out = H5I_INVALID_HID; } /* end if requested datatype not found */ /* If the requested datatype does not yet exist in the output file, copy it @@ -343,11 +353,11 @@ done: int copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_t *travt, pack_opt_t *options) { - hid_t attr_id = -1; /* attr ID */ - hid_t attr_out = -1; /* attr ID */ - hid_t space_id = -1; /* space ID */ - hid_t ftype_id = -1; /* file type ID */ - hid_t wtype_id = -1; /* read/write type ID */ + hid_t attr_id = H5I_INVALID_HID; /* attr ID */ + hid_t attr_out = H5I_INVALID_HID; /* attr ID */ + hid_t space_id = H5I_INVALID_HID; /* space ID */ + hid_t ftype_id = H5I_INVALID_HID; /* file type ID */ + hid_t wtype_id = H5I_INVALID_HID; /* read/write type ID */ size_t msize; /* size of type */ void *buf = NULL; /* data buffer */ hsize_t nelmts; /* number of elements in dataset */ @@ -355,14 +365,14 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_ htri_t is_named; /* Whether the datatype is named */ hsize_t dims[H5S_MAX_RANK];/* dimensions of dataset */ char name[255]; - H5O_info_t oinfo; /* object info */ + H5O_info2_t oinfo; /* object info */ int j; unsigned u; hbool_t is_ref = 0; H5T_class_t type_class = -1; int ret_value = 0; - if (H5Oget_info2(loc_in, &oinfo, H5O_INFO_NUM_ATTRS) < 0) + if (H5Oget_info3(loc_in, &oinfo, H5O_INFO_NUM_ATTRS) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Oget_info failed"); /*------------------------------------------------------------------------- @@ -385,7 +395,7 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_ if ((is_named = H5Tcommitted(ftype_id)) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Tcommitted failed"); if (is_named && travt) { - hid_t fidout = -1; + hid_t fidout = H5I_INVALID_HID; /* Create out file id */ if ((fidout = H5Iget_file_id(loc_out)) < 0) @@ -432,7 +442,7 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_ type_class = H5Tget_class(wtype_id); is_ref = (type_class == H5T_REFERENCE); if (type_class == H5T_VLEN || type_class == H5T_ARRAY) { - hid_t base_type = -1; + hid_t base_type = H5I_INVALID_HID; base_type = H5Tget_super(ftype_id); is_ref = (is_ref || (H5Tget_class(base_type) == H5T_REFERENCE)); @@ -500,16 +510,16 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_ */ if (H5Sclose(space_id) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Sclose failed"); - space_id = -1; + space_id = H5I_INVALID_HID; if (H5Tclose(wtype_id) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Tclose failed"); - wtype_id = -1; + wtype_id = H5I_INVALID_HID; if (H5Tclose(ftype_id) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Tclose failed"); - ftype_id = -1; + ftype_id = H5I_INVALID_HID; if (H5Aclose(attr_id) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Aclose failed"); - attr_id = -1; + attr_id = H5I_INVALID_HID; } /* for u (each attribute) */ done: @@ -725,9 +735,9 @@ done: static int check_objects(const char* fname, pack_opt_t *options) { - hid_t fid = -1; - hid_t did = -1; - hid_t sid = -1; + hid_t fid = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; unsigned int i; int ifil; trav_table_t *travt = NULL; @@ -752,7 +762,7 @@ check_objects(const char* fname, pack_opt_t *options) /* Initialize indexing options */ h5trav_set_index(sort_by, sort_order); /* init table */ - trav_table_init(&travt); + trav_table_init(fid, &travt); /* get the list of objects in the file */ if (h5trav_gettable(fid, travt) < 0) diff --git a/tools/src/h5repack/h5repack.h b/tools/src/h5repack/h5repack.h index a0e0387..52ecb0e 100644 --- a/tools/src/h5repack/h5repack.h +++ b/tools/src/h5repack/h5repack.h @@ -131,7 +131,7 @@ typedef struct { typedef struct named_dt_t { - haddr_t addr_in; /* Address of the named dtype in the in file */ + H5O_token_t obj_token; /* Object token for the named dtype in the in file */ hid_t id_out; /* Open identifier for the dtype in the out file */ struct named_dt_t *next; /* Next dtype */ } named_dt_t; diff --git a/tools/src/h5repack/h5repack_copy.c b/tools/src/h5repack/h5repack_copy.c index 613606f..1044244 100644 --- a/tools/src/h5repack/h5repack_copy.c +++ b/tools/src/h5repack/h5repack_copy.c @@ -61,11 +61,11 @@ static void print_user_block(const char *filename, hid_t fid); int copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options) { - hid_t fidin = -1; - hid_t fidout = -1; - hid_t fcpl_in = -1; /* file creation property list ID for input file */ - hid_t grp_in = -1; /* group ID */ - hid_t gcpl_in = -1; /* group creation property list */ + hid_t fidin = H5I_INVALID_HID; + hid_t fidout = H5I_INVALID_HID; + hid_t fcpl_in = H5I_INVALID_HID; /* file creation property list ID for input file */ + hid_t grp_in = H5I_INVALID_HID; /* group ID */ + hid_t gcpl_in = H5I_INVALID_HID; /* group creation property list */ hid_t fcpl = H5P_DEFAULT; /* file creation property list ID */ hid_t fapl = H5P_DEFAULT; /* file access property list ID */ trav_table_t *travt = NULL; @@ -316,7 +316,7 @@ print_user_block(fnamein, fidin); /* Initialize indexing options */ h5trav_set_index(sort_by, sort_order); /* init table */ - trav_table_init(&travt); + trav_table_init(fidin, &travt); if (travt) { /* get the list of objects in the file */ @@ -580,19 +580,19 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, pack_opt_t *options) /* repack options */ { - hid_t grp_in = -1; /* group ID */ - hid_t grp_out = -1; /* group ID */ - hid_t dset_in = -1; /* read dataset ID */ - hid_t dset_out = -1; /* write dataset ID */ - hid_t gcpl_in = -1; /* group creation property list */ - hid_t gcpl_out = -1; /* group creation property list */ - hid_t type_in = -1; /* named type ID */ - hid_t type_out = -1; /* named type ID */ - hid_t dcpl_in = -1; /* dataset creation property list ID */ - hid_t dcpl_out = -1; /* dataset creation property list ID */ - hid_t f_space_id = -1; /* file space ID */ - hid_t ftype_id = -1; /* file type ID */ - hid_t wtype_id = -1; /* read/write type ID */ + hid_t grp_in = H5I_INVALID_HID; /* group ID */ + hid_t grp_out = H5I_INVALID_HID; /* group ID */ + hid_t dset_in = H5I_INVALID_HID; /* read dataset ID */ + hid_t dset_out = H5I_INVALID_HID; /* write dataset ID */ + hid_t gcpl_in = H5I_INVALID_HID; /* group creation property list */ + hid_t gcpl_out = H5I_INVALID_HID; /* group creation property list */ + hid_t type_in = H5I_INVALID_HID; /* named type ID */ + hid_t type_out = H5I_INVALID_HID; /* named type ID */ + hid_t dcpl_in = H5I_INVALID_HID; /* dataset creation property list ID */ + hid_t dcpl_out = H5I_INVALID_HID; /* dataset creation property list ID */ + hid_t f_space_id = H5I_INVALID_HID; /* file space ID */ + hid_t ftype_id = H5I_INVALID_HID; /* file type ID */ + hid_t wtype_id = H5I_INVALID_HID; /* read/write type ID */ named_dt_t *named_dt_head = NULL; /* Pointer to the stack of named datatypes copied */ size_t msize; /* size of type */ hsize_t nelmts; /* number of elements in dataset */ @@ -946,7 +946,7 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, hsize_t zero[8]; /*vector of zeros */ int k; H5D_layout_t dset_layout; - hid_t dcpl_tmp = -1; /* dataset creation property list ID */ + hid_t dcpl_tmp = H5I_INVALID_HID; /* dataset creation property list ID */ /* check if we have VL data in the dataset's datatype */ if (H5Tdetect_class(wtype_id, H5T_VLEN) == TRUE) @@ -1095,7 +1095,7 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, *------------------------------------------------------------------------- */ else { - hid_t pid = -1; + hid_t pid = H5I_INVALID_HID; /* create property to pass copy options */ if ((pid = H5Pcreate(H5P_OBJECT_COPY)) < 0) @@ -1167,7 +1167,7 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, H5TOOLS_GOTO_ERROR((-1), "H5Tclose failed"); if (H5Tclose(type_out) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Tclose failed"); - type_out = -1; /* named datatypes stack, named_dt_head, manages allocation */ + type_out = H5I_INVALID_HID; /* named datatypes stack, named_dt_head, manages allocation */ break; @@ -1429,7 +1429,7 @@ print_user_block(const char *filename, hid_t fid) int fh = -1; /* file handle */ hsize_t ub_size; /* user block size */ hsize_t size; /* size read */ - hid_t fcpl = -1; /* file creation property list ID for HDF5 file */ + hid_t fcpl = H5I_INVALID_HID; /* file creation property list ID for HDF5 file */ int i; int ret_value = 0; diff --git a/tools/src/h5repack/h5repack_main.c b/tools/src/h5repack/h5repack_main.c index c628beb..c0c8a2a 100644 --- a/tools/src/h5repack/h5repack_main.c +++ b/tools/src/h5repack/h5repack_main.c @@ -281,7 +281,7 @@ int read_info(const char *filename, pack_opt_t *options) char comp_info[1024]; FILE *fp = NULL; char c; - int i, rc = 1; + int i; int ret_value = EXIT_SUCCESS; if (NULL == (fp = HDfopen(filename, "r"))) { diff --git a/tools/src/h5repack/h5repack_parse.c b/tools/src/h5repack/h5repack_parse.c index 03fcf0e..95cacc1 100644 --- a/tools/src/h5repack/h5repack_parse.c +++ b/tools/src/h5repack/h5repack_parse.c @@ -228,7 +228,7 @@ obj_list_t* parse_filter(const char *str, unsigned *n_objs, filter_info_t *filt, l = 0; } else if (f == -1) { - filt->filt_flag = HDstrtoul(stype, NULL, 0); + filt->filt_flag = (unsigned)HDstrtoul(stype, NULL, 0); f = 0; } else if (p == -1) { diff --git a/tools/src/h5repack/h5repack_refs.c b/tools/src/h5repack/h5repack_refs.c index a7fbd3a..e6a747d 100644 --- a/tools/src/h5repack/h5repack_refs.c +++ b/tools/src/h5repack/h5repack_refs.c @@ -42,15 +42,15 @@ int do_copy_refobjs(hid_t fidin, trav_table_t *travt, pack_opt_t *options) /* repack options */ { - hid_t grp_in = -1; /* read group ID */ - hid_t grp_out = -1; /* write group ID */ - hid_t dset_in = -1; /* read dataset ID */ - hid_t dset_out = -1; /* write dataset ID */ - hid_t type_in = -1; /* named type ID */ - hid_t dcpl_id = -1; /* dataset creation property list ID */ - hid_t space_id = -1; /* space ID */ - hid_t ftype_id = -1; /* file data type ID */ - hid_t mtype_id = -1; /* memory data type ID */ + hid_t grp_in = H5I_INVALID_HID; /* read group ID */ + hid_t grp_out = H5I_INVALID_HID; /* write group ID */ + hid_t dset_in = H5I_INVALID_HID; /* read dataset ID */ + hid_t dset_out = H5I_INVALID_HID; /* write dataset ID */ + hid_t type_in = H5I_INVALID_HID; /* named type ID */ + hid_t dcpl_id = H5I_INVALID_HID; /* dataset creation property list ID */ + hid_t space_id = H5I_INVALID_HID; /* space ID */ + hid_t ftype_id = H5I_INVALID_HID; /* file data type ID */ + hid_t mtype_id = H5I_INVALID_HID; /* memory data type ID */ size_t msize; /* memory size of memory type */ hsize_t nelmts; /* number of elements in dataset */ int rank; /* rank of dataset */ @@ -145,7 +145,7 @@ int do_copy_refobjs(hid_t fidin, *------------------------------------------------------------------------- */ if(H5Tequal(mtype_id, H5T_STD_REF_OBJ)) { - hid_t refobj_id = -1; + hid_t refobj_id = H5I_INVALID_HID; hobj_ref_t *refbuf = NULL; /* buffer for object references */ hobj_ref_t *buf = NULL; const char* refname; @@ -221,7 +221,7 @@ int do_copy_refobjs(hid_t fidin, *------------------------------------------------------------------------- */ else if(H5Tequal(mtype_id, H5T_STD_REF_DSETREG)) { - hid_t refobj_id = -1; + hid_t refobj_id = H5I_INVALID_HID; hdset_reg_ref_t *refbuf = NULL; /* input buffer for region references */ hdset_reg_ref_t *buf = NULL; /* output buffer */ const char* refname; @@ -260,7 +260,7 @@ int do_copy_refobjs(hid_t fidin, * in the second traversal of the file */ if((refname = MapIdToName(refobj_id, travt)) != NULL) { - hid_t region_id = -1; /* region id of the referenced dataset */ + hid_t region_id = H5I_INVALID_HID; /* region id of the referenced dataset */ if((region_id = H5Rget_region(dset_in, H5R_DATASET_REGION, &buf[u])) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Rget_region failed"); @@ -430,16 +430,16 @@ static int copy_refs_attr(hid_t loc_in, trav_table_t *travt, hid_t fidout) /* for saving references */ { - hid_t attr_id = -1; /* attr ID */ - hid_t attr_out = -1; /* attr ID */ - hid_t space_id = -1; /* space ID */ - hid_t ftype_id = -1; /* file data type ID */ - hid_t mtype_id = -1; /* memory data type ID */ + hid_t attr_id = H5I_INVALID_HID; /* attr ID */ + hid_t attr_out = H5I_INVALID_HID; /* attr ID */ + hid_t space_id = H5I_INVALID_HID; /* space ID */ + hid_t ftype_id = H5I_INVALID_HID; /* file data type ID */ + hid_t mtype_id = H5I_INVALID_HID; /* memory data type ID */ size_t msize; /* memory size of type */ hsize_t nelmts; /* number of elements in dataset */ hsize_t dims[H5S_MAX_RANK];/* dimensions of dataset */ char name[255]; - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ unsigned u, i, j; int rank; H5T_class_t type_class = -1; @@ -454,7 +454,7 @@ static int copy_refs_attr(hid_t loc_in, int ref_comp_field_n = 0; int ret_value = 0; - if(H5Oget_info2(loc_in, &oinfo, H5O_INFO_NUM_ATTRS) < 0) + if(H5Oget_info3(loc_in, &oinfo, H5O_INFO_NUM_ATTRS) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Oget_info failed"); for(u = 0; u < (unsigned)oinfo.num_attrs; u++) { @@ -796,16 +796,19 @@ MapIdToName(hid_t refobj_id, trav_table_t *travt) if(travt->objs[u].type == (h5trav_type_t)H5O_TYPE_DATASET || travt->objs[u].type == (h5trav_type_t)H5O_TYPE_GROUP || travt->objs[u].type == (h5trav_type_t)H5O_TYPE_NAMED_DATATYPE) { - H5O_info_t ref_oinfo; /* Stat for the refobj id */ + H5O_info2_t ref_oinfo; /* Stat for the refobj id */ + int token_cmp; /* obtain information to identify the referenced object uniquely */ - if(H5Oget_info2(refobj_id, &ref_oinfo, H5O_INFO_BASIC) < 0) + if(H5Oget_info3(refobj_id, &ref_oinfo, H5O_INFO_BASIC) < 0) goto out; - if(ref_oinfo.addr == travt->objs[u].objno) { + if(H5Otoken_cmp(refobj_id, &ref_oinfo.token, &travt->objs[u].obj_token, &token_cmp) < 0) + goto out; + if(!token_cmp) { ret = travt->objs[u].name; goto out; - } /* end if */ + } } /* end if */ } /* u */ @@ -823,8 +826,8 @@ static herr_t update_ref_value(hid_t obj_id, H5R_type_t ref_type, void *ref_in, hid_t fid_out, void *ref_out, trav_table_t *travt) { const char *ref_obj_name; - hid_t space_id = -1; - hid_t ref_obj_id = -1; + hid_t space_id = H5I_INVALID_HID; + hid_t ref_obj_id = H5I_INVALID_HID; herr_t ret_value = SUCCEED; ref_obj_id = H5Rdereference2(obj_id, H5P_DEFAULT, ref_type, ref_in); diff --git a/tools/src/h5repack/h5repack_verify.c b/tools/src/h5repack/h5repack_verify.c index d84766a..683988c 100644 --- a/tools/src/h5repack/h5repack_verify.c +++ b/tools/src/h5repack/h5repack_verify.c @@ -39,17 +39,17 @@ static int verify_filters(hid_t pid, hid_t tid, int nfilters, filter_info_t *fil int h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options) { - hid_t fidin = -1; /* file ID for input file*/ - hid_t fidout = -1; /* file ID for output file*/ - hid_t did = -1; /* dataset ID */ - hid_t pid = -1; /* dataset creation property list ID */ - hid_t sid = -1; /* space ID */ - hid_t tid = -1; /* type ID */ + hid_t fidin = H5I_INVALID_HID; /* file ID for input file*/ + hid_t fidout = H5I_INVALID_HID; /* file ID for output file*/ + hid_t did = H5I_INVALID_HID; /* dataset ID */ + hid_t pid = H5I_INVALID_HID; /* dataset creation property list ID */ + hid_t sid = H5I_INVALID_HID; /* space ID */ + hid_t tid = H5I_INVALID_HID; /* type ID */ int ok = 1; /* step results */ unsigned int i; trav_table_t *travt = NULL; - hid_t fcpl_in = -1; /* file creation property for input file */ - hid_t fcpl_out = -1; /* file creation property for output file */ + hid_t fcpl_in = H5I_INVALID_HID; /* file creation property for input file */ + hid_t fcpl_out = H5I_INVALID_HID; /* file creation property for output file */ H5F_fspace_strategy_t in_strategy, out_strategy; /* file space handling strategy for in/output file */ hbool_t in_persist, out_persist; /* free-space persist status for in/output file */ hsize_t in_threshold, out_threshold; /* free-space section threshold for in/output file */ @@ -95,7 +95,7 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options * close *------------------------------------------------------------------------- */ - if(H5Pclose(pid) < 0) + if (H5Pclose(pid) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Pclose failed"); if (H5Sclose(sid) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Sclose failed"); @@ -114,7 +114,7 @@ h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options /* Initialize indexing options */ h5trav_set_index(sort_by, sort_order); /* init table */ - trav_table_init(&travt); + trav_table_init(fidout, &travt); /* get the list of objects in the file */ if(h5trav_gettable(fidout, travt) < 0) @@ -355,14 +355,14 @@ int verify_layout(hid_t pid, pack_info_t *obj) int h5repack_cmp_pl(const char *fname1, const char *fname2) { - hid_t fid1 =-1; /* file ID */ - hid_t fid2 =-1; /* file ID */ - hid_t dset1 =-1; /* dataset ID */ - hid_t dset2 =-1; /* dataset ID */ - hid_t gid =-1; /* group ID */ - hid_t dcpl1 =-1; /* dataset creation property list ID */ - hid_t dcpl2 =-1; /* dataset creation property list ID */ - hid_t gcplid =-1; /* group creation property list */ + hid_t fid1 =H5I_INVALID_HID; /* file ID */ + hid_t fid2 =H5I_INVALID_HID; /* file ID */ + hid_t dset1 =H5I_INVALID_HID; /* dataset ID */ + hid_t dset2 =H5I_INVALID_HID; /* dataset ID */ + hid_t gid =H5I_INVALID_HID; /* group ID */ + hid_t dcpl1 =H5I_INVALID_HID; /* dataset creation property list ID */ + hid_t dcpl2 =H5I_INVALID_HID; /* dataset creation property list ID */ + hid_t gcplid =H5I_INVALID_HID; /* group creation property list */ unsigned crt_order_flag1; /* group creation order flag */ unsigned crt_order_flag2; /* group creation order flag */ trav_table_t *trav = NULL; @@ -386,7 +386,7 @@ int h5repack_cmp_pl(const char *fname1, const char *fname2) /* Initialize indexing options */ h5trav_set_index(sort_by, sort_order); /* init table */ - trav_table_init(&trav); + trav_table_init(fid1, &trav); if(h5trav_gettable(fid1, trav) < 0) H5TOOLS_GOTO_ERROR((-1), "h5trav_gettable failed"); diff --git a/tools/src/h5stat/h5stat.c b/tools/src/h5stat/h5stat.c index 9ce7327..adc905a 100644 --- a/tools/src/h5stat/h5stat.c +++ b/tools/src/h5stat/h5stat.c @@ -379,13 +379,13 @@ ceil_log10(unsigned long x) *------------------------------------------------------------------------- */ static herr_t -attribute_stats(iter_t *iter, const H5O_info_t *oi) +attribute_stats(iter_t *iter, const H5O_info2_t *oi, const H5O_native_info_t *native_oi) { unsigned bin; /* "bin" the number of objects falls in */ /* Update dataset & attribute metadata info */ - iter->attrs_btree_storage_size += oi->meta_size.attr.index_size; - iter->attrs_heap_storage_size += oi->meta_size.attr.heap_size; + iter->attrs_btree_storage_size += native_oi->meta_size.attr.index_size; + iter->attrs_heap_storage_size += native_oi->meta_size.attr.heap_size; /* Update small # of attribute count & limits */ if(oi->num_attrs <= (hsize_t)sattrs_threshold) @@ -440,7 +440,7 @@ attribute_stats(iter_t *iter, const H5O_info_t *oi) *------------------------------------------------------------------------- */ static herr_t -group_stats(iter_t *iter, const char *name, const H5O_info_t *oi) +group_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_native_info_t *native_oi) { H5G_info_t ginfo; /* Group information */ unsigned bin; /* "bin" the number of objects falls in */ @@ -450,8 +450,8 @@ group_stats(iter_t *iter, const char *name, const H5O_info_t *oi) iter->uniq_groups++; /* Get object header information */ - iter->group_ohdr_info.total_size += oi->hdr.space.total; - iter->group_ohdr_info.free_size += oi->hdr.space.free; + iter->group_ohdr_info.total_size += native_oi->hdr.space.total; + iter->group_ohdr_info.free_size += native_oi->hdr.space.free; /* Get group information */ if((ret_value = H5Gget_info_by_name(iter->fid, name, &ginfo, H5P_DEFAULT)) < 0) @@ -484,11 +484,11 @@ group_stats(iter_t *iter, const char *name, const H5O_info_t *oi) (iter->group_bins[bin])++; /* Update group metadata info */ - iter->groups_btree_storage_size += oi->meta_size.obj.index_size; - iter->groups_heap_storage_size += oi->meta_size.obj.heap_size; + iter->groups_btree_storage_size += native_oi->meta_size.obj.index_size; + iter->groups_heap_storage_size += native_oi->meta_size.obj.heap_size; /* Update attribute metadata info */ - if((ret_value = attribute_stats(iter, oi)) < 0) + if((ret_value = attribute_stats(iter, oi, native_oi)) < 0) H5TOOLS_GOTO_ERROR(FAIL, "attribute_stats failed"); done: @@ -510,7 +510,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) +dataset_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_native_info_t *native_oi) { unsigned bin; /* "bin" the number of objects falls in */ hid_t did; /* Dataset ID */ @@ -533,18 +533,18 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) iter->uniq_dsets++; /* Get object header information */ - iter->dset_ohdr_info.total_size += oi->hdr.space.total; - iter->dset_ohdr_info.free_size += oi->hdr.space.free; + iter->dset_ohdr_info.total_size += native_oi->hdr.space.total; + iter->dset_ohdr_info.free_size += native_oi->hdr.space.free; if((did = H5Dopen2(iter->fid, name, H5P_DEFAULT)) < 0) H5TOOLS_GOTO_ERROR(FAIL, "H5Dopen() failed"); /* Update dataset metadata info */ - iter->datasets_index_storage_size += oi->meta_size.obj.index_size; - iter->datasets_heap_storage_size += oi->meta_size.obj.heap_size; + iter->datasets_index_storage_size += native_oi->meta_size.obj.index_size; + iter->datasets_heap_storage_size += native_oi->meta_size.obj.heap_size; /* Update attribute metadata info */ - if((ret_value = attribute_stats(iter, oi)) < 0) + if((ret_value = attribute_stats(iter, oi, native_oi)) < 0) H5TOOLS_GOTO_ERROR(FAIL, "attribute_stats() failed"); /* Get storage info */ @@ -702,7 +702,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -datatype_stats(iter_t *iter, const H5O_info_t *oi) +datatype_stats(iter_t *iter, const H5O_info2_t *oi, const H5O_native_info_t *native_oi) { herr_t ret_value = SUCCEED; @@ -710,11 +710,11 @@ datatype_stats(iter_t *iter, const H5O_info_t *oi) iter->uniq_dtypes++; /* Get object header information */ - iter->dtype_ohdr_info.total_size += oi->hdr.space.total; - iter->dtype_ohdr_info.free_size += oi->hdr.space.free; + iter->dtype_ohdr_info.total_size += native_oi->hdr.space.total; + iter->dtype_ohdr_info.free_size += native_oi->hdr.space.free; /* Update attribute metadata info */ - if((ret_value = attribute_stats(iter, oi)) < 0) + if((ret_value = attribute_stats(iter, oi, native_oi)) < 0) H5TOOLS_GOTO_ERROR(FAIL, "attribute_stats() failed"); done: return ret_value; @@ -735,31 +735,36 @@ done: *------------------------------------------------------------------------- */ static herr_t -obj_stats(const char *path, const H5O_info_t *oi, const char *already_visited, +obj_stats(const char *path, const H5O_info2_t *oi, const char *already_visited, void *_iter) { + H5O_native_info_t native_info; iter_t *iter = (iter_t *)_iter; herr_t ret_value = SUCCEED; /* If the object has already been seen then just return */ if(NULL == already_visited) { + /* Retrieve the native info for the object */ + if(H5Oget_native_info_by_name(iter->fid, path, &native_info, H5O_NATIVE_INFO_ALL, H5P_DEFAULT) < 0) + H5TOOLS_GOTO_ERROR(FAIL, "H5Oget_native_info_by_name failed"); + /* Gather some general statistics about the object */ if(oi->rc > iter->max_links) iter->max_links = oi->rc; switch(oi->type) { case H5O_TYPE_GROUP: - if(group_stats(iter, path, oi) < 0) + if(group_stats(iter, path, oi, &native_info) < 0) H5TOOLS_GOTO_ERROR(FAIL, "group_stats failed"); break; case H5O_TYPE_DATASET: - if(dataset_stats(iter, path, oi) < 0) + if(dataset_stats(iter, path, oi, &native_info) < 0) H5TOOLS_GOTO_ERROR(FAIL, "dataset_stats failed"); break; case H5O_TYPE_NAMED_DATATYPE: - if(datatype_stats(iter, oi) < 0) + if(datatype_stats(iter, oi, &native_info) < 0) H5TOOLS_GOTO_ERROR(FAIL, "datatype_stats failed"); break; @@ -792,7 +797,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -lnk_stats(const char H5_ATTR_UNUSED *path, const H5L_info_t *li, void *_iter) +lnk_stats(const char H5_ATTR_UNUSED *path, const H5L_info2_t *li, void *_iter) { iter_t *iter = (iter_t *)_iter; @@ -1853,7 +1858,7 @@ main(int argc, const char *argv[]) { iter_t iter; const char *fname = NULL; - hid_t fid = -1; + hid_t fid = H5I_INVALID_HID; H5E_auto2_t func; H5E_auto2_t tools_func; void *edata; diff --git a/tools/src/misc/h5clear.c b/tools/src/misc/h5clear.c index ae57031..38fa6a2 100644 --- a/tools/src/misc/h5clear.c +++ b/tools/src/misc/h5clear.c @@ -175,7 +175,7 @@ parse_command_line(int argc, const char **argv) usage(h5tools_getprogname()); goto done; } - increment = HDatoi(opt_arg); + increment = (hsize_t)HDatoi(opt_arg); } break; @@ -252,8 +252,8 @@ int main (int argc, const char *argv[]) { char *fname = NULL; /* File name */ - hid_t fapl = -1; /* File access property list */ - hid_t fid = -1; /* File ID */ + hid_t fapl = H5I_INVALID_HID; /* File access property list */ + hid_t fid = H5I_INVALID_HID; /* File ID */ haddr_t image_addr; hsize_t image_len; unsigned flags = H5F_ACC_RDWR; /* file access flags */ diff --git a/tools/test/h5copy/CMakeLists.txt b/tools/test/h5copy/CMakeLists.txt index 1130ea7..028935f 100644 --- a/tools/test/h5copy/CMakeLists.txt +++ b/tools/test/h5copy/CMakeLists.txt @@ -43,4 +43,6 @@ if (BUILD_SHARED_LIBS) ) endif () -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/tools/test/h5copy/h5copygentest.c b/tools/test/h5copy/h5copygentest.c index a3acdae..716b0d2 100644 --- a/tools/test/h5copy/h5copygentest.c +++ b/tools/test/h5copy/h5copygentest.c @@ -338,14 +338,14 @@ static void gent_att_compound_vlstr(hid_t loc_id) const char *v; } s1; hsize_t dim[1] = {1}; /* Dimension size */ - hid_t sid = -1; /* Dataspace ID */ - hid_t tid = -1; /* Datatype ID */ - hid_t aid = -1; /* Attribute ID */ - hid_t did = -1; /* Dataset ID */ - hid_t gid = -1; /* Group ID */ - hid_t vl_str_tid = -1; /* Variable length datatype ID */ - hid_t cmpd_tid = -1; /* Compound datatype ID */ - hid_t null_sid = -1; /* Null dataspace ID */ + hid_t sid = H5I_INVALID_HID; /* Dataspace ID */ + hid_t tid = H5I_INVALID_HID; /* Datatype ID */ + hid_t aid = H5I_INVALID_HID; /* Attribute ID */ + hid_t did = H5I_INVALID_HID; /* Dataset ID */ + hid_t gid = H5I_INVALID_HID; /* Group ID */ + hid_t vl_str_tid = H5I_INVALID_HID; /* Variable length datatype ID */ + hid_t cmpd_tid = H5I_INVALID_HID; /* Compound datatype ID */ + hid_t null_sid = H5I_INVALID_HID; /* Null dataspace ID */ s1 buf; /* Buffer */ buf.i = 9; @@ -725,7 +725,7 @@ out: *------------------------------------------------------------------------*/ static void Test_Obj_Copy(void) { - hid_t fid = -1; /* File id */ + hid_t fid = H5I_INVALID_HID; /* File id */ hid_t fapl_new = (-1); /* File access property id */ unsigned new_format; /* New format or old format */ diff --git a/tools/test/h5diff/CMakeLists.txt b/tools/test/h5diff/CMakeLists.txt index cb4397f..82e09c6 100644 --- a/tools/test/h5diff/CMakeLists.txt +++ b/tools/test/h5diff/CMakeLists.txt @@ -43,4 +43,6 @@ if (BUILD_SHARED_LIBS) ) endif () -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS) + include (CMakeTests.cmake) +endif () diff --git a/tools/test/h5diff/CMakeTests.cmake b/tools/test/h5diff/CMakeTests.cmake index 347f796..88ed62c 100644 --- a/tools/test/h5diff/CMakeTests.cmake +++ b/tools/test/h5diff/CMakeTests.cmake @@ -376,35 +376,37 @@ ############################################################################## macro (ADD_H5_TEST resultfile resultcode) - # If using memchecker add tests without using scripts - if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME H5DIFF-${resultfile} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_ext}> ${ARGN}) - set_tests_properties (H5DIFF-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") - if (${resultcode}) - set_tests_properties (H5DIFF-${resultfile} PROPERTIES WILL_FAIL "true") - endif () - if (last_test) - set_tests_properties (H5DIFF-${resultfile} PROPERTIES DEPENDS ${last_test}) - endif () - else () - add_test ( - NAME H5DIFF-${resultfile} - COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5diff${tgt_ext}>" - -D "TEST_ARGS:STRING=${ARGN}" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" - -D "TEST_OUTPUT=${resultfile}.out" - -D "TEST_EXPECT=${resultcode}" - -D "TEST_REFERENCE=${resultfile}.txt" - -D "TEST_APPEND=EXIT CODE:" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" - ) - if (last_test) - set_tests_properties (H5DIFF-${resultfile} PROPERTIES DEPENDS ${last_test}) + if (HDF5_TEST_SERIAL) + # If using memchecker add tests without using scripts + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME H5DIFF-${resultfile} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_ext}> ${ARGN}) + set_tests_properties (H5DIFF-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + if (${resultcode}) + set_tests_properties (H5DIFF-${resultfile} PROPERTIES WILL_FAIL "true") + endif () + if (last_test) + set_tests_properties (H5DIFF-${resultfile} PROPERTIES DEPENDS ${last_test}) + endif () + else () + add_test ( + NAME H5DIFF-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5diff${tgt_ext}>" + -D "TEST_ARGS:STRING=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${resultfile}.txt" + -D "TEST_APPEND=EXIT CODE:" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + if (last_test) + set_tests_properties (H5DIFF-${resultfile} PROPERTIES DEPENDS ${last_test}) + endif () endif () endif () - if (H5_HAVE_PARALLEL) + if (H5_HAVE_PARALLEL AND HDF5_TEST_PARALLEL) ADD_PH5_TEST (${resultfile} ${resultcode} ${ARGN}) endif () endmacro () @@ -1547,7 +1549,7 @@ ADD_H5_TEST (h5diff_v3 0 -c ${FILEV1} ${FILEV2}) ############################################################################## ### P L U G I N T E S T S ############################################################################## -if (BUILD_SHARED_LIBS) +if (BUILD_SHARED_LIBS AND HDF5_TEST_SERIAL) ADD_H5_UD_TEST (h5diff_plugin_test 0 h5diff_ud -v tudfilter.h5 tudfilter2.h5) ADD_H5_UD_TEST (h5diff_plugin_fail 2 h5diff_udfail -v tudfilter.h5 tudfilter2.h5) endif () diff --git a/tools/test/h5diff/h5diffgentest.c b/tools/test/h5diff/h5diffgentest.c index c711013..1d5354f 100644 --- a/tools/test/h5diff/h5diffgentest.c +++ b/tools/test/h5diff/h5diffgentest.c @@ -303,8 +303,8 @@ int main(void) static int test_basic(const char *fname1, const char *fname2, const char *fname3) { - hid_t fid1 = -1, fid2 = -1; - hid_t gid1 = -1, gid2 = -1, gid3 = -1; + hid_t fid1 = H5I_INVALID_HID, fid2 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID, gid2 = H5I_INVALID_HID, gid3 = H5I_INVALID_HID; hsize_t dims1[1] = { 6 }; hsize_t dims2[2] = { 3, 2 }; @@ -432,14 +432,12 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) /* epsilon = 0.0000000000000001 = 1e-16 * system epsilon for double : DBL_EPSILON = 2.22045E-16 */ - double data13[3][2] = { { H5_DOUBLE(0.0000000000000000), H5_DOUBLE( - 0.0000000000000001) }, { H5_DOUBLE(0.0000000000000001), - H5_DOUBLE(0.0000000000000000) }, { H5_DOUBLE( - 0.00000000000000033), H5_DOUBLE(0.0000000000000001) } }; - double data14[3][2] = { { H5_DOUBLE(0.0000000000000000), H5_DOUBLE( - 0.0000000000000004) }, { H5_DOUBLE(0.0000000000000002), - H5_DOUBLE(0.0000000000000001) }, { H5_DOUBLE( - 0.0000000000000001), H5_DOUBLE(0.00000000000000000) } }; + double data13[3][2] = { { 0.0000000000000000, 0.0000000000000001 }, + { 0.0000000000000001, 0.0000000000000000 }, + { 0.00000000000000033, 0.0000000000000001 } }; + double data14[3][2] = { { 0.0000000000000000, 0.0000000000000004 }, + { 0.0000000000000002, 0.0000000000000001 }, + { 0.0000000000000001, 0.00000000000000000 } }; write_dset(gid1, 2, dims2, "fp1", H5T_NATIVE_FLOAT, data11); write_dset(gid1, 2, dims2, "fp2", H5T_NATIVE_FLOAT, data12); @@ -662,11 +660,11 @@ out: static int test_types(const char *fname) { - hid_t fid1 = -1; - hid_t gid1 = -1; - hid_t gid2 = -1; - hid_t tid1 = -1; - hid_t tid2 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID; + hid_t gid2 = H5I_INVALID_HID; + hid_t tid1 = H5I_INVALID_HID; + hid_t tid2 = H5I_INVALID_HID; herr_t status; hsize_t dims[1] = { 1 }; typedef struct s1_t { @@ -787,8 +785,8 @@ int test_types(const char *fname) static int test_datatypes(const char *fname) { - hid_t fid1 = -1; - hid_t dset = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t dset = H5I_INVALID_HID; hsize_t dims[2] = { 3, 2 }; herr_t status; char buf1a[3][2] = { { 1, 1 }, { 1, 1 }, { 1, 1 } }; @@ -977,11 +975,11 @@ int test_datatypes(const char *fname) static int test_attributes(const char *file, int make_diffs /* flag to modify data buffers */) { - hid_t fid = -1; - hid_t did = -1; - hid_t gid = -1; - hid_t root_id = -1; - hid_t sid = -1; + hid_t fid = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; + hid_t gid = H5I_INVALID_HID; + hid_t root_id = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; hsize_t dims[1] = { 2 }; herr_t status; @@ -1039,14 +1037,14 @@ int test_attributes(const char *file, int make_diffs /* flag to modify data buff static int test_attributes_verbose_level(const char *fname1, const char *fname2) { herr_t status = SUCCEED; - hid_t fid1 = -1, fid2 = -1; - hid_t f1_gid = -1, f2_gid = -1; - hid_t f1_gid2 = -1, f2_gid2 = -1; - hid_t f1_gid3 = -1, f2_gid3 = -1; - hid_t f1_gid4 = -1, f2_gid4 = -1; - hid_t f1_did = -1, f2_did = -1; - hid_t f1_sid = -1, f2_sid = -1; - hid_t f1_tid = -1, f2_tid = -1; + hid_t fid1 = H5I_INVALID_HID, fid2 = H5I_INVALID_HID; + hid_t f1_gid = H5I_INVALID_HID, f2_gid = H5I_INVALID_HID; + hid_t f1_gid2 = H5I_INVALID_HID, f2_gid2 = H5I_INVALID_HID; + hid_t f1_gid3 = H5I_INVALID_HID, f2_gid3 = H5I_INVALID_HID; + hid_t f1_gid4 = H5I_INVALID_HID, f2_gid4 = H5I_INVALID_HID; + hid_t f1_did = H5I_INVALID_HID, f2_did = H5I_INVALID_HID; + hid_t f1_sid = H5I_INVALID_HID, f2_sid = H5I_INVALID_HID; + hid_t f1_tid = H5I_INVALID_HID, f2_tid = H5I_INVALID_HID; /* dset */ hsize_t dset_dims[1] = { 3 }; int dset_data[3] = { 0, 1, 2 }; @@ -1304,10 +1302,10 @@ out: static int test_datasets(const char *file, int make_diffs /* flag to modify data buffers */) { - hid_t fid = -1; - hid_t did = -1; - hid_t gid = -1; - hid_t sid = -1; + hid_t fid = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; + hid_t gid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; hsize_t dims[1] = { 2 }; herr_t status; int buf[2] = { 1, 2 }; @@ -1357,10 +1355,10 @@ int test_datasets(const char *file, int make_diffs /* flag to modify data buffer static int test_special_datasets(const char *file, int make_diffs /* flag to modify data buffers */) { - hid_t fid = -1; - hid_t did = -1; - hid_t sid0 = -1; - hid_t sid = -1; + hid_t fid = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; + hid_t sid0 = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; hsize_t dims0[SPACE1_RANK] = { SPACE1_DIM1, SPACE1_DIM2 }; hsize_t dims[SPACE1_RANK] = { SPACE1_DIM1, SPACE1_DIM2 }; herr_t status; @@ -1413,9 +1411,9 @@ int test_special_datasets(const char *file, int make_diffs /* flag to modify dat *-------------------------------------------------------------------------*/ static int test_link_name(const char *fname1) { - hid_t fid1 = -1; - hid_t gid1 = -1; - hid_t gid2 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID; + hid_t gid2 = H5I_INVALID_HID; herr_t status = SUCCEED; /*----------------------------------------------------------------------- @@ -1486,8 +1484,8 @@ out: *-------------------------------------------------------------------------*/ static int test_soft_links(const char *fname1) { - hid_t fid1 = -1; - hid_t gid1 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID; hsize_t dims2[2] = { 2, 4 }; int data1[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; int data2[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; @@ -1605,10 +1603,10 @@ out: *-------------------------------------------------------------------------*/ static int test_linked_softlinks(const char *fname1) { - hid_t fid1 = -1; - hid_t gid1 = -1; - hid_t gid2 = -1; - hid_t gid3 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID; + hid_t gid2 = H5I_INVALID_HID; + hid_t gid3 = H5I_INVALID_HID; hsize_t dims2[2] = { 2, 4 }; int data1[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; int data2[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; @@ -1786,10 +1784,10 @@ out: *-------------------------------------------------------------------------*/ static int test_external_links(const char *fname1, const char *fname2) { - hid_t fid1 = -1; - hid_t fid2 = -1; - hid_t gid1 = -1; - hid_t gid2 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t fid2 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID; + hid_t gid2 = H5I_INVALID_HID; hsize_t dims2[2] = { 2, 4 }; int data1[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; int data2[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; @@ -1931,9 +1929,9 @@ out: *-------------------------------------------------------------------------*/ static int test_ext2soft_links(const char *fname1, const char *fname2) { - hid_t fid1 = -1; - hid_t fid2 = -1; - hid_t gid2 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t fid2 = H5I_INVALID_HID; + hid_t gid2 = H5I_INVALID_HID; hsize_t dims2[2] = { 2, 4 }; int data1[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; int data2[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; @@ -2060,12 +2058,12 @@ out: static int gen_dataset_idx(const char *file, int format) { - hid_t fid = -1; /* file id */ - hid_t did = -1; - hid_t did2 = -1; /* dataset id */ - hid_t sid = -1; /* space id */ - hid_t fapl = -1; /* file access property id */ - hid_t dcpl = -1; /* dataset creation property id */ + hid_t fid = H5I_INVALID_HID; /* file id */ + hid_t did = H5I_INVALID_HID; + hid_t did2 = H5I_INVALID_HID; /* dataset id */ + hid_t sid = H5I_INVALID_HID; /* space id */ + hid_t fapl = H5I_INVALID_HID; /* file access property id */ + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property id */ hsize_t dims[1] = { 10 }; /* dataset dimension */ hsize_t c_dims[1] = { 2 }; /* chunk dimension */ herr_t status; /* return status */ @@ -2146,8 +2144,8 @@ int gen_dataset_idx(const char *file, int format) *-------------------------------------------------------------------------*/ static int test_dangle_links(const char *fname1, const char *fname2) { - hid_t fid1 = -1; - hid_t fid2 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t fid2 = H5I_INVALID_HID; hsize_t dims2[2] = { 2, 4 }; int data1[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; int data2[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; @@ -2346,10 +2344,10 @@ out: *-------------------------------------------------------------------------*/ static int test_group_recurse(const char *fname1, const char *fname2) { - hid_t fid1 = -1; - hid_t fid2 = -1; - hid_t gid1_f1 = -1, gid2_f1 = -1, gid3_f1 = -1, gid10_f1 = -1; - hid_t gid1_f2 = -1, gid2_f2 = -1, gid3_f2 = -1, gid11_f2 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t fid2 = H5I_INVALID_HID; + hid_t gid1_f1 = H5I_INVALID_HID, gid2_f1 = H5I_INVALID_HID, gid3_f1 = H5I_INVALID_HID, gid10_f1 = H5I_INVALID_HID; + hid_t gid1_f2 = H5I_INVALID_HID, gid2_f2 = H5I_INVALID_HID, gid3_f2 = H5I_INVALID_HID, gid11_f2 = H5I_INVALID_HID; hsize_t dims2[2] = { 2, 4 }; int data1[4][2] = { { 0, 1 }, { 0, 1 }, { 1, 0 }, { 1, 0 } }; int data2[4][2] = { { 0, 2 }, { 0, 2 }, { 2, 0 }, { 2, 0 } }; @@ -2758,18 +2756,18 @@ out: #define GRP_R_DSETNAME2 "dset2" static int test_group_recurse2(void) { - hid_t fileid1 = -1; - hid_t grp1 = -1; - hid_t grp2 = -1; - hid_t grp3 = -1; - hid_t grp4 = -1; - hid_t dset1 = -1; - hid_t dset2 = -1; - hid_t datatype = -1; - hid_t dataspace = -1; - hid_t fileid2 = -1; - hid_t fileid3 = -1; - hid_t fileid4 = -1; + hid_t fileid1 = H5I_INVALID_HID; + hid_t grp1 = H5I_INVALID_HID; + hid_t grp2 = H5I_INVALID_HID; + hid_t grp3 = H5I_INVALID_HID; + hid_t grp4 = H5I_INVALID_HID; + hid_t dset1 = H5I_INVALID_HID; + hid_t dset2 = H5I_INVALID_HID; + hid_t datatype = H5I_INVALID_HID; + hid_t dataspace = H5I_INVALID_HID; + hid_t fileid2 = H5I_INVALID_HID; + hid_t fileid3 = H5I_INVALID_HID; + hid_t fileid4 = H5I_INVALID_HID; hsize_t dimsf[2]; /* dataset dimensions */ herr_t status = 0; int data1[4][2] = { { 0, 0 }, { 1, 1 }, { 2, 2 }, { 3, 3 } }; @@ -3069,10 +3067,10 @@ out: *-------------------------------------------------------------------------*/ static int test_exclude_obj1(const char *fname1, const char *fname2) { - hid_t fid1 = -1; - hid_t fid2 = -1; - hid_t gid1 = -1; - hid_t gid2 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t fid2 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID; + hid_t gid2 = H5I_INVALID_HID; hsize_t dims2[2] = { 2, 4 }; int data1[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; int data2[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; @@ -3189,11 +3187,11 @@ out: *-------------------------------------------------------------------------*/ static int test_exclude_obj2(const char *fname1, const char *fname2) { - hid_t fid1 = -1; - hid_t fid2 = -1; - hid_t gid1 = -1; - hid_t gid2 = -1; - hid_t gid3 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t fid2 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID; + hid_t gid2 = H5I_INVALID_HID; + hid_t gid3 = H5I_INVALID_HID; hsize_t dims2[2] = { 2, 4 }; int data1[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; int data2[4][2] = { { 0, 1 }, { 2, 3 }, { 1, 2 }, { 3, 4 } }; @@ -3320,9 +3318,9 @@ out: *-------------------------------------------------------------------------*/ static int test_exclude_obj3(const char *fname1, const char *fname2) { - hid_t fid1 = -1; - hid_t fid2 = -1; - hid_t gid1 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t fid2 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID; hsize_t dims2[2] = { 2, 4 }; int data1[4][2] = { { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 } }; herr_t status = SUCCEED; @@ -3416,8 +3414,8 @@ out: static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int is_file_new) { int i; - hid_t fid1 = -1; /* file id */ - hid_t gid = -1; + hid_t fid1 = H5I_INVALID_HID; /* file id */ + hid_t gid = H5I_INVALID_HID; /* compound1 datatype */ typedef struct comp1_t { @@ -3534,21 +3532,21 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int } comp9_t; /* vlen string */ - hid_t sid_vlen_str = -1; /* dataspace ID */ - hid_t tid_vlen_str = -1; /* datatype ID */ + hid_t sid_vlen_str = H5I_INVALID_HID; /* dataspace ID */ + hid_t tid_vlen_str = H5I_INVALID_HID; /* datatype ID */ char vlen_str_buf[] = { "Variable length string" }; hsize_t dims_vlen_str[] = { VLEN_STR_DIM }; /* fixlen string */ - hid_t sid_fixlen_str = -1; /* dataspace ID */ - hid_t tid_fixlen_str = -1; /* datatype ID */ + hid_t sid_fixlen_str = H5I_INVALID_HID; /* dataspace ID */ + hid_t tid_fixlen_str = H5I_INVALID_HID; /* datatype ID */ const char fixlen_str_buf[FIXLEN_STR_SIZE] = { "Fixed length string" }; hsize_t dims_fixlen_str[] = { FIXLEN_STR_DIM }; /* vlen string array */ - hid_t sid_vlen_str_array = -1; /* dataspace ID */ - hid_t tid_vlen_str_array_pre = -1; /* datatype ID */ - hid_t tid_vlen_str_array = -1; /* datatype ID */ + hid_t sid_vlen_str_array = H5I_INVALID_HID; /* dataspace ID */ + hid_t tid_vlen_str_array_pre = H5I_INVALID_HID; /* datatype ID */ + hid_t tid_vlen_str_array = H5I_INVALID_HID; /* datatype ID */ const char *vlen_str_array_buf[VLEN_STR_ARRY_DIM] = { "1 - Variable length string Array", "2 - Testing variable length string array in compound type", @@ -3556,9 +3554,9 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int hsize_t dims_vlen_str_array[] = { VLEN_STR_ARRY_DIM }; /* fixlen string array */ - hid_t sid_fixlen_str_array = -1; /* dataspace ID */ - hid_t tid_fixlen_str_array_pre = -1; /* datatype ID */ - hid_t tid_fixlen_str_array = -1; /* datatype ID */ + hid_t sid_fixlen_str_array = H5I_INVALID_HID; /* dataspace ID */ + hid_t tid_fixlen_str_array_pre = H5I_INVALID_HID; /* datatype ID */ + hid_t tid_fixlen_str_array = H5I_INVALID_HID; /* datatype ID */ const char *fixlen_str_array_buf[FIXLEN_STR_ARRY_DIM] = { "1 - Fixed length string Array", "2 - Fixed length string Array", "3 - Fixed length string Array" }; @@ -3567,17 +3565,17 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int /*------------------------------------------ * compound dataset *------------------------------------------*/ - hid_t sid_comp = -1; /* dataspace ID */ - hid_t tid1_comp = -1; /* datatype ID */ - hid_t tid2_comp = -1; /* datatype ID */ - hid_t tid3_comp = -1; /* datatype ID */ - hid_t tid4_comp = -1; /* datatype ID */ - hid_t tid5_comp = -1; /* datatype ID */ - hid_t tid6_comp = -1; /* datatype ID */ - hid_t tid7_comp = -1; /* datatype ID */ - hid_t tid8_comp = -1; /* datatype ID */ - hid_t tid9_comp = -1; /* datatype ID */ - hid_t did_comp = -1; /* dataset ID */ + hid_t sid_comp = H5I_INVALID_HID; /* dataspace ID */ + hid_t tid1_comp = H5I_INVALID_HID; /* datatype ID */ + hid_t tid2_comp = H5I_INVALID_HID; /* datatype ID */ + hid_t tid3_comp = H5I_INVALID_HID; /* datatype ID */ + hid_t tid4_comp = H5I_INVALID_HID; /* datatype ID */ + hid_t tid5_comp = H5I_INVALID_HID; /* datatype ID */ + hid_t tid6_comp = H5I_INVALID_HID; /* datatype ID */ + hid_t tid7_comp = H5I_INVALID_HID; /* datatype ID */ + hid_t tid8_comp = H5I_INVALID_HID; /* datatype ID */ + hid_t tid9_comp = H5I_INVALID_HID; /* datatype ID */ + hid_t did_comp = H5I_INVALID_HID; /* dataset ID */ hsize_t dims_comp[] = { COMP_DIM }; herr_t status = SUCCEED; @@ -4020,7 +4018,7 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int } H5Dclose(did_comp); - did_comp = -1; + did_comp = H5I_INVALID_HID; out: /*----------------------------------------------------------------------- @@ -4091,9 +4089,9 @@ out: static int test_enums(const char *fname) { - hid_t fid = -1; + hid_t fid = H5I_INVALID_HID; - hid_t tid = -1; + hid_t tid = H5I_INVALID_HID; int enum_val = -1; /* The data in the two arrays cover the following cases: @@ -4217,17 +4215,17 @@ static void test_comps_array(const char *fname, const char *dset, const char *at cmpd1_t wdata[SDIM_DSET]; /* dataset with compound1 */ - hid_t fid = -1; /* HDF5 File IDs */ - hid_t did_dset = -1; /* Dataset ID */ - hid_t sid_dset = -1; /* Dataset space ID */ - hid_t tid_cmpd1 = -1; /* Compound1 type ID */ - hid_t tid_arry1 = -1; /* Array type ID in compound1 */ - hid_t tid_cmpd2 = -1; /* Compound2 type ID */ - hid_t tid_attr = -1; + hid_t fid = H5I_INVALID_HID; /* HDF5 File IDs */ + hid_t did_dset = H5I_INVALID_HID; /* Dataset ID */ + hid_t sid_dset = H5I_INVALID_HID; /* Dataset space ID */ + hid_t tid_cmpd1 = H5I_INVALID_HID; /* Compound1 type ID */ + hid_t tid_arry1 = H5I_INVALID_HID; /* Array type ID in compound1 */ + hid_t tid_cmpd2 = H5I_INVALID_HID; /* Compound2 type ID */ + hid_t tid_attr = H5I_INVALID_HID; hsize_t sdims_dset[] = { SDIM_DSET }; hsize_t sdims_cmpd_arry[] = { SDIM_CMPD_ARRAY }; int i, j; - herr_t ret; /* Generic return value */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Initialize array data to write */ for (i = 0; i < SDIM_DSET; i++) { @@ -4326,17 +4324,17 @@ static void test_comps_vlen(const char * fname, const char *dset, const char *at cmpd1_t wdata[SDIM_DSET]; /* Dataset for compound1 */ - hid_t fid = -1; /* HDF5 File ID */ - hid_t did_dset = -1; /* dataset ID */ - hid_t sid_dset = -1; /* dataset space ID */ - hid_t tid_attr = -1; - hid_t tid_cmpd2 = -1; /* compound2 type ID */ - hid_t tid_cmpd1 = -1; /* compound1 type ID */ - hid_t tid_cmpd1_vlen = -1; + hid_t fid = H5I_INVALID_HID; /* HDF5 File ID */ + hid_t did_dset = H5I_INVALID_HID; /* dataset ID */ + hid_t sid_dset = H5I_INVALID_HID; /* dataset space ID */ + hid_t tid_attr = H5I_INVALID_HID; + hid_t tid_cmpd2 = H5I_INVALID_HID; /* compound2 type ID */ + hid_t tid_cmpd1 = H5I_INVALID_HID; /* compound1 type ID */ + hid_t tid_cmpd1_vlen = H5I_INVALID_HID; hsize_t sdims_dset[] = { SDIM_DSET }; unsigned i, j; /* counting variables */ - herr_t ret; /* Generic return value */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Allocate and initialize VL data to write */ for (i = 0; i < SDIM_DSET; i++) { @@ -4442,19 +4440,19 @@ static void test_comps_array_vlen(const char * fname, const char *dset, const ch } cmpd1_t; cmpd1_t wdata[SDIM_DSET]; /* Information to write */ - hid_t fid = -1; /* HDF5 File IDs */ - hid_t did_dset = -1; /* Dataset ID */ - hid_t sid_dset = -1; /* Dataspace ID */ - hid_t tid_attr = -1; - hid_t tid_cmpd1 = -1; /* Compound1 Datatype ID */ - hid_t tid_arry1 = -1; /* Array Datatype ID */ - hid_t tid_cmpd2 = -1; /* Compound2 Datatype ID */ - hid_t tid_cmpd2_vlen = -1; - hid_t tid_cmpd3 = -1; /* Compound3 Datatype ID */ + hid_t fid = H5I_INVALID_HID; /* HDF5 File IDs */ + hid_t did_dset = H5I_INVALID_HID; /* Dataset ID */ + hid_t sid_dset = H5I_INVALID_HID; /* Dataspace ID */ + hid_t tid_attr = H5I_INVALID_HID; + hid_t tid_cmpd1 = H5I_INVALID_HID; /* Compound1 Datatype ID */ + hid_t tid_arry1 = H5I_INVALID_HID; /* Array Datatype ID */ + hid_t tid_cmpd2 = H5I_INVALID_HID; /* Compound2 Datatype ID */ + hid_t tid_cmpd2_vlen = H5I_INVALID_HID; + hid_t tid_cmpd3 = H5I_INVALID_HID; /* Compound3 Datatype ID */ hsize_t sdims_dset[] = { SDIM_DSET }; hsize_t sdims_arry[] = { SDIM_CMPD_ARRAY }; unsigned i, j, k; /* counting variables */ - herr_t ret; /* Generic return value */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Initialize array data to write in compound1 */ for (i = 0; i < SDIM_DSET; i++) { @@ -4584,20 +4582,20 @@ static void test_comps_vlen_arry(const char * fname, const char *dset, const cha cmpd1_t wdata[SDIM_DSET]; /* Dataset for compound1 */ - hid_t fid = -1; /* HDF5 File ID */ - hid_t did_dset = -1; /* dataset ID */ - hid_t sid_dset = -1; /* dataset space ID */ - hid_t tid_attr = -1; - hid_t tid_cmpd3 = -1; /* compound3 type ID */ - hid_t tid_cmpd2 = -1; /* compound2 type ID */ - hid_t tid_cmpd2_arry = -1; - hid_t tid_cmpd1 = -1; /* compound1 type ID */ - hid_t tid_cmpd1_vlen = -1; + hid_t fid = H5I_INVALID_HID; /* HDF5 File ID */ + hid_t did_dset = H5I_INVALID_HID; /* dataset ID */ + hid_t sid_dset = H5I_INVALID_HID; /* dataset space ID */ + hid_t tid_attr = H5I_INVALID_HID; + hid_t tid_cmpd3 = H5I_INVALID_HID; /* compound3 type ID */ + hid_t tid_cmpd2 = H5I_INVALID_HID; /* compound2 type ID */ + hid_t tid_cmpd2_arry = H5I_INVALID_HID; + hid_t tid_cmpd1 = H5I_INVALID_HID; /* compound1 type ID */ + hid_t tid_cmpd1_vlen = H5I_INVALID_HID; hsize_t sdims_dset[] = { SDIM_DSET }; hsize_t sdims_cmpd_arry[] = { SDIM_CMPD_ARRAY }; unsigned i, j, k; /* counting variables */ - herr_t ret; /* Generic return value */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Allocate and initialize VL data to write */ for (i = 0; i < SDIM_DSET; i++) { @@ -4717,14 +4715,14 @@ static void test_comps_vlen_arry(const char * fname, const char *dset, const cha #define DIM_ARRY 3 static void test_data_nocomparables(const char * fname, int make_diffs) { - hid_t fid = -1; - hid_t gid1 = -1; - hid_t gid2 = -1; - hid_t did1 = -1; - hid_t did2 = -1; - hid_t sid1 = -1; - hid_t tid_dset1 = -1; - hid_t tid_attr1 = -1; + hid_t fid = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID; + hid_t gid2 = H5I_INVALID_HID; + hid_t did1 = H5I_INVALID_HID; + hid_t did2 = H5I_INVALID_HID; + hid_t sid1 = H5I_INVALID_HID; + hid_t tid_dset1 = H5I_INVALID_HID; + hid_t tid_attr1 = H5I_INVALID_HID; hsize_t dims1_1[1] = { DIM_ARRY }; hsize_t dims1_2[1] = { DIM_ARRY + 1 }; hsize_t dims2[2] = { DIM_ARRY, 1 }; @@ -4913,14 +4911,14 @@ out: static void test_objs_nocomparables(const char *fname1, const char *fname2) { - hid_t fid1 = -1; - hid_t fid2 = -1; - hid_t topgid1 = -1; - hid_t topgid2 = -1; - hid_t gid1 = -1; - hid_t tid1 = -1; - hid_t gid2 = -1; - hid_t tid2 = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t fid2 = H5I_INVALID_HID; + hid_t topgid1 = H5I_INVALID_HID; + hid_t topgid2 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID; + hid_t tid1 = H5I_INVALID_HID; + hid_t gid2 = H5I_INVALID_HID; + hid_t tid2 = H5I_INVALID_HID; hsize_t dims[1] = { DIM_ARRY }; int data1[DIM_ARRY] = { 1, 1, 1 }; int data2[DIM_ARRY] = { 2, 2, 2 }; @@ -5039,12 +5037,12 @@ static hid_t mkstr(int size, H5T_str_t pad) *-------------------------------------------------------------------------*/ static void test_objs_strings(const char *fname1, const char *fname2) { - hid_t fid1 = -1; - hid_t fid2 = -1; - hid_t dataset = -1; - hid_t space = -1; - hid_t f_type = -1; - hid_t m_type = -1; + hid_t fid1 = H5I_INVALID_HID; + hid_t fid2 = H5I_INVALID_HID; + hid_t dataset = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; + hid_t f_type = H5I_INVALID_HID; + hid_t m_type = H5I_INVALID_HID; hsize_t dims1[] = { 3, 4 }; char string1A[12][3] = { "s1", "s2", "s3", "s4", "s5", "s6", "s", "s", "s9", "s0", "s1", "s2" }; @@ -5211,10 +5209,10 @@ void write_attr_strings(hid_t loc_id, const char* dset_name, hid_t fid, int make RED, GREEN } e_t; - hid_t aid = -1; - hid_t sid = -1; - hid_t tid = -1; - herr_t status; + hid_t aid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + herr_t H5_ATTR_NDEBUG_UNUSED status; int val, i, j, k, l, n; float f; @@ -6202,10 +6200,10 @@ void write_attr_in(hid_t loc_id, const char* dset_name, hid_t fid, int make_diff RED, GREEN } e_t; - hid_t aid = -1; - hid_t sid = -1; - hid_t tid = -1; - herr_t status; + hid_t aid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + herr_t H5_ATTR_NDEBUG_UNUSED status; int val, i, j, k, l, n; float f; @@ -7193,11 +7191,11 @@ void write_dset_in(hid_t loc_id, const char* dset_name, hid_t fid, int make_diff RED, GREEN } e_t; - hid_t did = -1; - hid_t sid = -1; - hid_t tid = -1; - hid_t dcpl = -1; - herr_t status; + hid_t did = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + hid_t dcpl = H5I_INVALID_HID; + herr_t H5_ATTR_NDEBUG_UNUSED status; int val, i, j, k, l, n; float f; int fillvalue = 2; @@ -7417,9 +7415,9 @@ void write_dset_in(hid_t loc_id, const char* dset_name, hid_t fid, int make_diff { double *dbuf; /* information to write */ - hid_t ldid = -1; /* dataset ID */ - hid_t lsid = -1; /* dataspace ID */ - hid_t ltid = -1; /* datatype ID */ + hid_t ldid = H5I_INVALID_HID; /* dataset ID */ + hid_t lsid = H5I_INVALID_HID; /* dataspace ID */ + hid_t ltid = H5I_INVALID_HID; /* datatype ID */ size_t size; hsize_t sdims[] = { 1 }; hsize_t tdims[] = { H5TOOLS_MALLOCSIZE / sizeof(double) + 1 }; @@ -7820,19 +7818,19 @@ static void gen_datareg(hid_t fid, int make_diffs /* flag to modify data buffers */) { /* data dataset */ - hid_t did1 = -1; /* dataset ID */ - hid_t sid1 = -1; /* dataspace ID */ + hid_t did1 = H5I_INVALID_HID; /* dataset ID */ + hid_t sid1 = H5I_INVALID_HID; /* dataspace ID */ hsize_t dims1[2] = { 10, 10 };/* dimensions */ int *buf; /* dataset buffer */ /* reference dataset */ - hid_t did2 = -1; /* dataset ID */ - hid_t sid2 = -1; /* dataspace ID */ + hid_t did2 = H5I_INVALID_HID; /* dataset ID */ + hid_t sid2 = H5I_INVALID_HID; /* dataspace ID */ hsize_t dims2[] = { 2 }; /* 2 references */ hdset_reg_ref_t *rbuf; /* buffer for write the references */ hsize_t start[10]; /* starting location of hyperslab */ hsize_t count[10]; /* element count of hyperslab */ hsize_t coord[5][2]; /* coordinates for point selection */ - herr_t status; + herr_t H5_ATTR_NDEBUG_UNUSED status; int i; /* allocate the buffer for write the references */ @@ -7931,12 +7929,12 @@ void gen_datareg(hid_t fid, int make_diffs /* flag to modify data buffers */) static int test_hyperslab(const char *fname, int make_diffs /* flag to modify data buffers */) { - hid_t did = -1; - hid_t fid = -1; - hid_t f_sid = -1; - hid_t m_sid = -1; - hid_t tid = -1; - hid_t dcpl = -1; + hid_t did = H5I_INVALID_HID; + hid_t fid = H5I_INVALID_HID; + hid_t f_sid = H5I_INVALID_HID; + hid_t m_sid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + hid_t dcpl = H5I_INVALID_HID; hsize_t dims[1] = { GBLL }; /* dataset dimensions */ hsize_t hs_size[1] = { GBLL / (1024 * 1024) }; /* hyperslab dimensions */ hsize_t chunk_dims[1] = { GBLL / 1024 }; /* chunk dimensions */ @@ -8030,8 +8028,8 @@ out: static int write_attr(hid_t loc_id, int rank, hsize_t *dims, const char *name, hid_t tid, void *buf) { - hid_t aid = -1; - hid_t sid = -1; + hid_t aid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; /* create a space */ if ((sid = H5Screate_simple(rank, dims, NULL)) < 0) @@ -8070,8 +8068,8 @@ out: static herr_t write_dset(hid_t loc_id, int rank, hsize_t *dims, const char *name, hid_t tid, void *buf) { - hid_t did = -1; - hid_t sid = -1; + hid_t did = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; /* create a space */ if((sid = H5Screate_simple(rank, dims, NULL)) < 0) diff --git a/tools/test/h5dump/CMakeLists.txt b/tools/test/h5dump/CMakeLists.txt index 38f4118..b9e4ef5 100644 --- a/tools/test/h5dump/CMakeLists.txt +++ b/tools/test/h5dump/CMakeLists.txt @@ -43,10 +43,12 @@ if (HDF5_BUILD_GENERATORS AND NOT ONLY_SHARED_LIBS) #add_test (NAME h5dumpgentest COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5dumpgentest>) endif () -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) -include (CMakeTestsPBITS.cmake) + include (CMakeTestsPBITS.cmake) -include (CMakeTestsVDS.cmake) + include (CMakeTestsVDS.cmake) -include (CMakeTestsXML.cmake) + include (CMakeTestsXML.cmake) +endif () diff --git a/tools/test/h5dump/errfiles/tdset-2.err b/tools/test/h5dump/errfiles/tdset-2.err index 2d70b35..39bbb0e 100644 --- a/tools/test/h5dump/errfiles/tdset-2.err +++ b/tools/test/h5dump/errfiles/tdset-2.err @@ -27,7 +27,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Lget_info(): unable to get link info + #000: (file name) line (number) in H5Lget_info2(): unable to get link info major: Links minor: Can't get value #001: (file name) line (number) in H5VL_link_get(): link get failed diff --git a/tools/test/h5dump/errfiles/tperror.err b/tools/test/h5dump/errfiles/tperror.err index b0b908b..e2f24c1 100644 --- a/tools/test/h5dump/errfiles/tperror.err +++ b/tools/test/h5dump/errfiles/tperror.err @@ -27,7 +27,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Lget_info(): unable to get link info + #000: (file name) line (number) in H5Lget_info2(): unable to get link info major: Links minor: Can't get value #001: (file name) line (number) in H5VL_link_get(): link get failed diff --git a/tools/test/h5dump/errfiles/tqmarkfile.err b/tools/test/h5dump/errfiles/tqmarkfile.err index 2c4f1ff..4c3b2ef 100644 --- a/tools/test/h5dump/errfiles/tqmarkfile.err +++ b/tools/test/h5dump/errfiles/tqmarkfile.err @@ -15,7 +15,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Lget_info(): unable to get link info + #000: (file name) line (number) in H5Lget_info2(): unable to get link info major: Symbol table minor: Object not found #001: (file name) line (number) in H5L_get_info(): name doesn't exist diff --git a/tools/test/h5dump/h5dumpgentest.c b/tools/test/h5dump/h5dumpgentest.c index 6cf2916..e68e622 100644 --- a/tools/test/h5dump/h5dumpgentest.c +++ b/tools/test/h5dump/h5dumpgentest.c @@ -463,10 +463,23 @@ gent_dataset(void) { hid_t fid, dataset, space; hsize_t dims[2]; - int dset1[10][20]; - double dset2[30][20]; + int **dset1 = NULL; + int *dset1_data = NULL; + double **dset2 = NULL; + double *dset2_data = NULL; int i, j; + /* Set up data arrays */ + dset1_data = (int *)HDcalloc(10 * 20, sizeof(int)); + dset1 = (int **)HDcalloc(10, sizeof(dset1_data)); + for (i = 0; i < 10; i++) + dset1[i] = dset1_data + (i * 20); + + dset2_data = (double *)HDcalloc(30 * 20, sizeof(double)); + dset2 = (double **)HDcalloc(30, sizeof(dset2_data)); + for (i = 0; i < 30; i++) + dset2[i] = dset2_data + (i * 20); + fid = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /* dset1 */ @@ -478,7 +491,7 @@ gent_dataset(void) for(j = 0; j < 20; j++) dset1[i][j] = j + i; - H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset1); + H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset1_data); H5Sclose(space); H5Dclose(dataset); @@ -491,11 +504,16 @@ gent_dataset(void) for(j = 0; j < 20; j++) dset2[i][j] = 0.0001F * (float)j + (float)i; - H5Dwrite(dataset, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset2); + H5Dwrite(dataset, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset2_data); H5Sclose(space); H5Dclose(dataset); H5Fclose(fid); + + HDfree(dset1); + HDfree(dset1_data); + HDfree(dset2); + HDfree(dset2_data); } static void @@ -638,11 +656,11 @@ static void gent_softlink(void) #define NY 2 static int gent_softlink2(void) { - hid_t fileid1 = -1; - hid_t gid1 = -1, gid2 = -1; - hid_t datatype = -1; - hid_t dset1 = -1, dset2 = -1; - hid_t dataspace = -1; + hid_t fileid1 = H5I_INVALID_HID; + hid_t gid1 = H5I_INVALID_HID, gid2 = H5I_INVALID_HID; + hid_t datatype = H5I_INVALID_HID; + hid_t dset1 = H5I_INVALID_HID, dset2 = H5I_INVALID_HID; + hid_t dataspace = H5I_INVALID_HID; hsize_t dimsf[2]; /* dataset dimensions */ int data1[NX][NY] = {{0,0},{1,1},{2,2},{3,3}}; int data2[NX][NY] = {{0,0},{0,1},{0,2},{3,3}}; @@ -1554,7 +1572,7 @@ gent_many(void) dset1_t dset1[6]; hsize_t dim[4]; - herr_t ret; + herr_t H5_ATTR_NDEBUG_UNUSED ret; fid = H5Fcreate(FILE12, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -1773,9 +1791,17 @@ static void gent_str(void) { int a[8][10]; char s[12][33]; } compound_t; - compound_t comp1[3][6]; + + compound_t **comp1 = NULL; + compound_t *comp1_data = NULL; hsize_t mdims[2]; + /* Set up data array */ + comp1_data = (compound_t *)HDcalloc(3 * 6, sizeof(compound_t)); + comp1 = (compound_t **)HDcalloc(3, sizeof(comp1_data)); + for (i = 0; i < 3; i++) + comp1[i] = comp1_data + (i * 6); + fid = H5Fcreate(FILE13, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /* string 1 : nullterm string */ @@ -1861,7 +1887,7 @@ static void gent_str(void) { } dataset = H5Dcreate2(fid, "/comp1", f_type, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - H5Dwrite(dataset, f_type2, H5S_ALL, H5S_ALL, H5P_DEFAULT, comp1); + H5Dwrite(dataset, f_type2, H5S_ALL, H5S_ALL, H5P_DEFAULT, comp1_data); H5Tclose(f_type); H5Tclose(f_type2); @@ -1869,6 +1895,9 @@ static void gent_str(void) { H5Dclose(dataset); H5Fclose(fid); + + HDfree(comp1); + HDfree(comp1_data); } /* @@ -2548,7 +2577,7 @@ static void gent_opaque(void) static void gent_bitfields(void) { - hid_t file, grp=-1, type=-1, space=-1, dset=-1; + hid_t file, grp=H5I_INVALID_HID, type=H5I_INVALID_HID, space=H5I_INVALID_HID, dset=H5I_INVALID_HID; size_t i; hsize_t nelmts; unsigned char buf[32]; @@ -2603,7 +2632,7 @@ static void gent_vldatatypes(void) hid_t file, dset, space, type; hsize_t dims[] = { SPACE1_DIM1 }; int i; - herr_t ret=0; + herr_t H5_ATTR_NDEBUG_UNUSED ret=0; file = H5Fcreate(FILE21, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -2698,7 +2727,7 @@ gent_vldatatypes2(void) hid_t tid1, tid2; /* Datatype IDs */ hsize_t dims1[] = {SPACE1_DIM1}; unsigned i,j,k; /* counting variables */ - herr_t ret; /* Generic return value */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Allocate and initialize VL data to write */ for(i = 0; i < SPACE1_DIM1; i++) { @@ -2771,7 +2800,7 @@ static void gent_vldatatypes3(void) hid_t tid1, tid2; /* Datatype IDs */ hsize_t dims1[] = {SPACE1_DIM1}; unsigned i,j; /* counting variables */ - herr_t ret; /* Generic return value */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Allocate and initialize VL data to write */ for(i=0; i<SPACE1_DIM1; i++) { @@ -2840,7 +2869,7 @@ static void gent_vldatatypes4(void) hid_t tid1, tid2; /* Datatype IDs */ hsize_t dims1[] = {SPACE1_DIM1}; unsigned i,j; /* counting variables */ - herr_t ret; /* Generic return value */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Allocate and initialize VL data to write */ for(i=0; i<SPACE1_DIM1; i++) { @@ -2897,14 +2926,14 @@ static void gent_vldatatypes4(void) /* Generate a variable-length dataset with NULL values in it */ static void gent_vldatatypes5(void) { - hvl_t wdata [SPACE1_DIM1]; - hid_t fid1; - hid_t dataset; - hid_t sid1; - hid_t tid1; - hsize_t dims1[] = {SPACE1_DIM1}; - int i,j; /* counting variable */ - herr_t ret; /* Generic return value */ + hvl_t wdata [SPACE1_DIM1]; + hid_t fid1; + hid_t dataset; + hid_t sid1; + hid_t tid1; + hsize_t dims1[] = {SPACE1_DIM1}; + int i,j; /* counting variable */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* initialize data for dataset */ for(i=0; i<SPACE1_DIM1; i++) { @@ -2966,16 +2995,15 @@ static void gent_vldatatypes5(void) static void gent_array1_big(void) { - int *wdata; /* Information to write */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Datatype ID */ - hsize_t sdims1[] = {SPACE_ARRAY1BIG_DIM}; - hsize_t tdims1[] = {ARRAY1BIG_DIM}; - int i,j; /* counting variables */ - herr_t ret; /* Generic return value */ - + int *wdata; /* Information to write */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Datatype ID */ + hsize_t sdims1[] = {SPACE_ARRAY1BIG_DIM}; + hsize_t tdims1[] = {ARRAY1BIG_DIM}; + int i,j; /* counting variables */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* for region reference dataset */ hid_t dset2; @@ -3101,15 +3129,15 @@ static void gent_array1(void) static void gent_array2(void) { - int wdata[SPACE1_DIM1][ARRAY2_DIM1][ARRAY2_DIM2][ARRAY2_DIM3]; /* Information to write */ - hid_t fid; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid; /* Dataspace ID */ - hid_t tid; /* Datatype ID */ - hsize_t sdims1[] = {SPACE1_DIM1}; - hsize_t tdims2[] = {ARRAY2_DIM1,ARRAY2_DIM2,ARRAY2_DIM3}; - int i,j,k,l; /* counting variables */ - herr_t ret; /* Generic return value */ + int wdata[SPACE1_DIM1][ARRAY2_DIM1][ARRAY2_DIM2][ARRAY2_DIM3]; /* Information to write */ + hid_t fid; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid; /* Dataspace ID */ + hid_t tid; /* Datatype ID */ + hsize_t sdims1[] = {SPACE1_DIM1}; + hsize_t tdims2[] = {ARRAY2_DIM1,ARRAY2_DIM2,ARRAY2_DIM3}; + int i,j,k,l; /* counting variables */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Allocate and initialize array data to write */ for(i=0; i<SPACE1_DIM1; i++) @@ -3147,17 +3175,17 @@ static void gent_array2(void) static void gent_array3(void) { - int wdata[SPACE1_DIM1][ARRAY1_DIM1][ARRAY3_DIM1][ARRAY3_DIM2]; /* Information to write */ - hid_t fid; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid; /* Dataspace ID */ - hid_t tid1; /* 1-D array Datatype ID */ - hid_t tid2; /* 2-D array Datatype ID */ - hsize_t sdims1[] = {SPACE1_DIM1}; - hsize_t tdims1[] = {ARRAY1_DIM1}; - hsize_t tdims2[] = {ARRAY3_DIM1,ARRAY3_DIM2}; - int i,j,k,l; /* counting variables */ - herr_t ret; /* Generic return value */ + int wdata[SPACE1_DIM1][ARRAY1_DIM1][ARRAY3_DIM1][ARRAY3_DIM2]; /* Information to write */ + hid_t fid; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid; /* Dataspace ID */ + hid_t tid1; /* 1-D array Datatype ID */ + hid_t tid2; /* 2-D array Datatype ID */ + hsize_t sdims1[] = {SPACE1_DIM1}; + hsize_t tdims1[] = {ARRAY1_DIM1}; + hsize_t tdims2[] = {ARRAY3_DIM1,ARRAY3_DIM2}; + int i,j,k,l; /* counting variables */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Allocate and initialize array data to write */ for(i=0; i<SPACE1_DIM1; i++) @@ -3204,16 +3232,16 @@ static void gent_array4(void) int i; float f; } s2_t; - s2_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Array Datatype ID */ - hid_t tid2; /* Compound Datatype ID */ - hsize_t sdims1[] = {SPACE1_DIM1}; - hsize_t tdims1[] = {ARRAY1_DIM1}; - int i,j; /* counting variables */ - herr_t ret; /* Generic return value */ + s2_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Array Datatype ID */ + hid_t tid2; /* Compound Datatype ID */ + hsize_t sdims1[] = {SPACE1_DIM1}; + hsize_t tdims1[] = {ARRAY1_DIM1}; + int i,j; /* counting variables */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Initialize array data to write */ for(i=0; i<SPACE1_DIM1; i++) @@ -3270,17 +3298,17 @@ static void gent_array5(void) int i; float f[ARRAY1_DIM1]; } s2_t; - s2_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Array Datatype ID */ - hid_t tid2; /* Compound Datatype ID */ - hid_t tid3; /* Nested Array Datatype ID */ - hsize_t sdims1[] = {SPACE1_DIM1}; - hsize_t tdims1[] = {ARRAY1_DIM1}; - int i,j,k; /* counting variables */ - herr_t ret; /* Generic return value */ + s2_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Array Datatype ID */ + hid_t tid2; /* Compound Datatype ID */ + hid_t tid3; /* Nested Array Datatype ID */ + hsize_t sdims1[] = {SPACE1_DIM1}; + hsize_t tdims1[] = {ARRAY1_DIM1}; + int i,j,k; /* counting variables */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Initialize array data to write */ for(i=0; i<SPACE1_DIM1; i++) @@ -3341,16 +3369,16 @@ static void gent_array5(void) static void gent_array6(void) { - hvl_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Array Datatype ID */ - hid_t tid2; /* VL Datatype ID */ - hsize_t sdims1[] = {SPACE1_DIM1}; - hsize_t tdims1[] = {ARRAY1_DIM1}; - int i,j,k; /* counting variables */ - herr_t ret; /* Generic return value */ + hvl_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Array Datatype ID */ + hid_t tid2; /* VL Datatype ID */ + hsize_t sdims1[] = {SPACE1_DIM1}; + hsize_t tdims1[] = {ARRAY1_DIM1}; + int i,j,k; /* counting variables */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Initialize array data to write */ for(i=0; i<SPACE1_DIM1; i++) @@ -3401,17 +3429,17 @@ static void gent_array6(void) static void gent_array7(void) { - hvl_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Array Datatype ID */ - hid_t tid2; /* VL Datatype ID */ - hid_t tid3; /* Nested Array Datatype ID */ - hsize_t sdims1[] = {SPACE1_DIM1}; - hsize_t tdims1[] = {ARRAY1_DIM1}; - int i,j,k,l; /* Index variables */ - herr_t ret; /* Generic return value */ + hvl_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Array Datatype ID */ + hid_t tid2; /* VL Datatype ID */ + hid_t tid3; /* Nested Array Datatype ID */ + hsize_t sdims1[] = {SPACE1_DIM1}; + hsize_t tdims1[] = {ARRAY1_DIM1}; + int i,j,k,l; /* Index variables */ + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Generic return value */ /* Initialize array data to write */ for(i=0; i<SPACE1_DIM1; i++) @@ -3471,11 +3499,11 @@ static void gent_array7(void) /* Test the boundary of the display output buffer at the reallocation event */ static void gent_array8(void) { - hid_t file = -1; /* Handles */ - hid_t filetype = -1; /* Handles */ - hid_t space = -1; /* Handles */ - hid_t dset = -1; /* Handles */ - herr_t status = -1; + hid_t file = H5I_INVALID_HID; /* Handles */ + hid_t filetype = H5I_INVALID_HID; /* Handles */ + hid_t space = H5I_INVALID_HID; /* Handles */ + hid_t dset = H5I_INVALID_HID; /* Handles */ + herr_t H5_ATTR_NDEBUG_UNUSED status = -1; hsize_t sdims[] = {F64_DIM0}; hsize_t tdims[] = {F64_DIM1}; int *wdata; /* Write buffer */ @@ -3542,7 +3570,7 @@ static void gent_empty(void) } empty_struct; hid_t file, dset, space, type; hsize_t dims[] = { SPACE1_DIM1 }; - herr_t ret=0; + herr_t H5_ATTR_NDEBUG_UNUSED ret=0; file = H5Fcreate(FILE32, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -3748,9 +3776,15 @@ void gent_multi(void) H5FD_mem_t mt, memb_map[H5FD_MEM_NTYPES]; hid_t memb_fapl[H5FD_MEM_NTYPES]; const char *memb_name[H5FD_MEM_NTYPES]; - char sv[H5FD_MEM_NTYPES][1024]; + char **sv = NULL; + char *sv_data = NULL; haddr_t memb_addr[H5FD_MEM_NTYPES]; + sv_data = (char *)HDcalloc(H5FD_MEM_NTYPES * 1024, sizeof(char)); + sv = (char **)HDcalloc(H5FD_MEM_NTYPES, sizeof(sv_data)); + for (i = 0; i < H5FD_MEM_NTYPES; i++) + sv[i] = sv_data + (i * 1024); + fapl = H5Pcreate(H5P_FILE_ACCESS); HDmemset(memb_map, 0, sizeof memb_map); @@ -3791,6 +3825,9 @@ void gent_multi(void) H5Dclose(dataset); H5Fclose(fid); H5Pclose(fapl); + + HDfree(sv); + HDfree(sv_data); } static void gent_large_objname(void) @@ -3930,7 +3967,7 @@ static void write_attr_in(hid_t loc_id, hid_t aid; hid_t sid; hid_t tid; - herr_t status; + herr_t H5_ATTR_NDEBUG_UNUSED status; int val, i, j, k, n; float f; @@ -4371,7 +4408,7 @@ static void write_dset_in(hid_t loc_id, hid_t sid; hid_t tid; hid_t plist_id; - herr_t status; + herr_t H5_ATTR_NDEBUG_UNUSED status; int val, i, j, k, n; float f; int fillvalue=2; @@ -4809,7 +4846,7 @@ static void gent_attr_all(void) hid_t root_id; hid_t sid; hsize_t dims[1] = {2}; - herr_t status; + herr_t H5_ATTR_NDEBUG_UNUSED status; /* Create a file and a dataset */ fid = H5Fcreate(FILE40, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -4967,7 +5004,7 @@ static void gent_compound_complex(void) hid_t array4_tid; /* Array datatype handle */ hid_t datafile, dataset; /* Datafile/dataset handles */ hid_t dataspace; /* Dataspace handle */ - herr_t status; /* Error checking variable */ + herr_t H5_ATTR_NDEBUG_UNUSED status; /* Error checking variable */ hsize_t dim[] = {F41_LENGTH}; /* Dataspace dimensions */ hsize_t array_dimb[] = {F41_DIMb}; /* Array dimensions */ hsize_t array_dimd[]={F41_ARRAY_DIMd1,F41_ARRAY_DIMd2}; /* Array dimensions */ @@ -5116,7 +5153,7 @@ static void gent_named_dtype_attr(void) hid_t aid; hid_t gid; int data=8; - herr_t ret; + herr_t H5_ATTR_NDEBUG_UNUSED ret; /* Create a file */ fid=H5Fcreate(FILE42, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -5338,7 +5375,7 @@ make_external(hid_t fid) hsize_t cur_size[1]; /*data space current size */ hsize_t max_size[1]; /*data space maximum size */ hsize_t size; /*bytes reserved for data in the external file*/ - int ret; + int H5_ATTR_NDEBUG_UNUSED ret; cur_size[0] = max_size[0] = 100; size = (max_size[0]*sizeof(int)/2); @@ -5386,7 +5423,8 @@ static void gent_filters(void) hsize_t dims1[RANK] = {DIM1,DIM2}; hsize_t chunk_dims[RANK] = {CDIM1,CDIM2}; int buf1[DIM1][DIM2]; - int i, j, n, ret; + int i, j, n; + int H5_ATTR_NDEBUG_UNUSED ret; for(i=n=0; i<DIM1; i++){ for(j=0; j<DIM2; j++){ @@ -5732,8 +5770,7 @@ static void gent_fcontents(void) hid_t tid; /* datatype ID */ hsize_t dims[1]={4}; int buf[4]={1,2,3,4}; - int ret; - + int H5_ATTR_NDEBUG_UNUSED ret; /* create a file */ fid = H5Fcreate(FILE46, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -5866,7 +5903,7 @@ static void gent_fvalues(void) hvl_t fillval3; /* vlen fill value */ hsize_t dimarray[1]={3}; /* array dimension */ int buf4[2][3]= {{1,2,3},{4,5,6}}; /* array */ - int ret; + int H5_ATTR_NDEBUG_UNUSED ret; /* create a file */ fid = H5Fcreate(FILE48, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -6024,9 +6061,9 @@ static void gent_string(void) c_t buf3 = {24, "Four score and seven\n years ago our forefathers brought forth on this continent a new nation"}; char buf4[] = {"Four score and seven\n years ago our forefathers brought forth on this continent a new nation"}; hsize_t dims1[] = {1}; - hsize_t dims2[] = {SPACE1_DIM1}; - hsize_t dims4[1]; - int ret; + hsize_t dims2[] = {SPACE1_DIM1}; + hsize_t dims4[1]; + int H5_ATTR_NDEBUG_UNUSED ret; dims4[0] = sizeof(buf4); @@ -6121,7 +6158,8 @@ static void gent_aindices(void) int buf2[10][10]; int buf3[2][10][10]; int buf4[2][2][10][10]; - int i, j, k, l, n, ret; + int i, j, k, l, n; + int H5_ATTR_NDEBUG_UNUSED ret; for(i = n = 0; i < 100; i++) buf1[i] = n++; @@ -6188,11 +6226,11 @@ static void gent_aindices(void) */ static void gent_longlinks(void) { - hid_t fid = (-1); /* File ID */ - hid_t gid = (-1); /* Group ID */ - hid_t gid2 = (-1); /* Datatype ID */ - char *objname = NULL; /* Name of object [Long] */ - size_t u; /* Local index variable */ + hid_t fid = (-1); /* File ID */ + hid_t gid = (-1); /* Group ID */ + hid_t H5_ATTR_NDEBUG_UNUSED gid2 = (-1); /* Datatype ID */ + char *objname = NULL; /* Name of object [Long] */ + size_t u; /* Local index variable */ /* Create files */ fid = H5Fcreate(FILE51, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -6353,12 +6391,12 @@ gent_binary(void) static void gent_bigdims(void) { - hid_t fid = -1; - hid_t did = -1; - hid_t f_sid = -1; - hid_t m_sid = -1; - hid_t tid = -1; - hid_t dcpl = -1; + hid_t fid = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; + hid_t f_sid = H5I_INVALID_HID; + hid_t m_sid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + hid_t dcpl = H5I_INVALID_HID; hsize_t dims[1]={DIM_4GB}; /* dataset dimensions */ hsize_t chunk_dims[1]={1024}; /* chunk dimensions */ hsize_t hs_start[1]; @@ -6369,7 +6407,7 @@ gent_bigdims(void) hsize_t i; char c; size_t nelmts; - int ret; + int H5_ATTR_NDEBUG_UNUSED ret; /* create a file */ fid = H5Fcreate(FILE56, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -6418,19 +6456,19 @@ gent_bigdims(void) /* close */ if(H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; if(H5Sclose(f_sid) < 0) goto out; - f_sid = -1; + f_sid = H5I_INVALID_HID; if(H5Sclose(m_sid) < 0) goto out; - m_sid = -1; + m_sid = H5I_INVALID_HID; if(H5Pclose(dcpl) < 0) goto out; - dcpl = -1; + dcpl = H5I_INVALID_HID; if(H5Dclose(did) < 0) goto out; - did = -1; + did = H5I_INVALID_HID; ret = H5Fclose(fid); HDassert(ret >= 0); @@ -6465,7 +6503,8 @@ gent_hyperslab(void) hid_t fid; /* file id */ hsize_t dims[2] = {32,4097}; /* big enough data size to force a second stripmine read */ double *buf; - int i, ret; + int i; + int H5_ATTR_NDEBUG_UNUSED ret; buf = (double*) HDmalloc(32 * 4097 * sizeof(double) ); for(i = 0; i < 32 * 4097; i++) @@ -6494,10 +6533,10 @@ gent_hyperslab(void) static void gent_group_creation_order(void) { - hid_t fid = -1; /* file ID */ - hid_t gid = -1; /* group ID */ - hid_t gcpl_id = -1; /* group creation property list ID */ - hid_t fcpl_id = -1; /* file creation property list ID (to set root group order) */ + hid_t fid = H5I_INVALID_HID; /* file ID */ + hid_t gid = H5I_INVALID_HID; /* group ID */ + hid_t gcpl_id = H5I_INVALID_HID; /* group creation property list ID */ + hid_t fcpl_id = H5I_INVALID_HID; /* file creation property list ID (to set root group order) */ if((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) goto out; @@ -6523,45 +6562,45 @@ gent_group_creation_order(void) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "2/c", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "2/b", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "2/a", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "2/a/a2", H5P_DEFAULT, gcpl_id, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "2/a/a1", H5P_DEFAULT, gcpl_id, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "2/a/a2/a22", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "2/a/a2/a21", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; /*------------------------------------------------------------------------- @@ -6576,56 +6615,56 @@ gent_group_creation_order(void) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "1/c", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "1/b", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "1/a", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "1/a/a2", H5P_DEFAULT, gcpl_id, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "1/a/a1", H5P_DEFAULT, gcpl_id, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "1/a/a2/a22", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if((gid = H5Gcreate2(fid, "1/a/a2/a21", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; if(H5Pclose(gcpl_id) < 0) goto out; - gcpl_id = -1; + gcpl_id = H5I_INVALID_HID; if(H5Pclose(fcpl_id) < 0) goto out; - fcpl_id = -1; + fcpl_id = H5I_INVALID_HID; if(H5Fclose(fid) < 0) goto out; - fid = -1; + fid = H5I_INVALID_HID; return; @@ -6653,15 +6692,15 @@ gent_group_creation_order(void) static void gent_attr_creation_order(void) { - hid_t fid = -1; /* file id */ - hid_t gid = -1; /* group id */ - hid_t did = -1; /* dataset id */ - hid_t sid = -1; /* space id */ - hid_t aid = -1; /* attribute id */ - hid_t tid = -1; /* datatype id */ - hid_t gcpl_id = -1; /* group creation property list ID */ - hid_t dcpl_id = -1; /* dataset creation property list ID */ - hid_t tcpl_id = -1; /* datatype creation property list ID */ + hid_t fid = H5I_INVALID_HID; /* file id */ + hid_t gid = H5I_INVALID_HID; /* group id */ + hid_t did = H5I_INVALID_HID; /* dataset id */ + hid_t sid = H5I_INVALID_HID; /* space id */ + hid_t aid = H5I_INVALID_HID; /* attribute id */ + hid_t tid = H5I_INVALID_HID; /* datatype id */ + hid_t gcpl_id = H5I_INVALID_HID; /* group creation property list ID */ + hid_t dcpl_id = H5I_INVALID_HID; /* dataset creation property list ID */ + hid_t tcpl_id = H5I_INVALID_HID; /* datatype creation property list ID */ int i; const char *attr_name[3] = {"c", "b", "a" }; @@ -6714,12 +6753,12 @@ gent_attr_creation_order(void) /* close attribute */ if(H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; } /* end for */ if(H5Dclose(did) < 0) goto out; - did = -1; + did = H5I_INVALID_HID; /*------------------------------------------------------------------------- @@ -6740,12 +6779,12 @@ gent_attr_creation_order(void) /* close attribute */ if(H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; } /* end for */ if(H5Dclose(did) < 0) goto out; - did = -1; + did = H5I_INVALID_HID; @@ -6766,12 +6805,12 @@ gent_attr_creation_order(void) /* close attribute */ if(H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; } /* end for */ if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * create a group without creation order tracked for attributes and atributes in it @@ -6790,12 +6829,12 @@ gent_attr_creation_order(void) /* close attribute */ if(H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; } /* end for */ if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * create a named datatype with creation order tracked for attributes and atributes in it @@ -6817,12 +6856,12 @@ gent_attr_creation_order(void) /* close attribute */ if(H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; } /* end for */ if(H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * create a named datatype without creation order tracked for attributes and atributes in it @@ -6844,12 +6883,12 @@ gent_attr_creation_order(void) /* close attribute */ if(H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; } /* end for */ if(H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * add some attributes to the root group @@ -6867,12 +6906,12 @@ gent_attr_creation_order(void) /* close attribute */ if(H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; } /* end for */ if(H5Gclose(gid) < 0) goto out; - gid = -1; + gid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * close @@ -6880,19 +6919,19 @@ gent_attr_creation_order(void) */ if(H5Sclose(sid) < 0) goto out; - sid = -1; + sid = H5I_INVALID_HID; if(H5Pclose(dcpl_id) < 0) goto out; - dcpl_id = -1; + dcpl_id = H5I_INVALID_HID; if(H5Pclose(gcpl_id) < 0) goto out; - gcpl_id = -1; + gcpl_id = H5I_INVALID_HID; if(H5Pclose(tcpl_id) < 0) goto out; - tcpl_id = -1; + tcpl_id = H5I_INVALID_HID; if(H5Fclose(fid) < 0) goto out; - fid = -1; + fid = H5I_INVALID_HID; @@ -7091,7 +7130,8 @@ gent_dataset_idx(void) hsize_t dims[2]; hsize_t maxdims[2]; int buf[20][10]; - int i, j, ret; + int i, j; + int H5_ATTR_NDEBUG_UNUSED ret; /* Get a copy of the file aaccess property */ fapl = H5Pcreate(H5P_FILE_ACCESS); @@ -7615,7 +7655,7 @@ static void gent_charsets(void) { hid_t fid, did, sid; - herr_t status; + herr_t H5_ATTR_NDEBUG_UNUSED status; hsize_t dim[] = {1}; /* Dataspace dimensions */ typedef struct CharSetInfo { const char *ascii_p_; @@ -7689,7 +7729,7 @@ static void gent_compound_intsizes(void) { Array1Struct *Array1; hid_t Array1Structid; /* File datatype identifier */ - herr_t status; /* Error checking variable */ + herr_t H5_ATTR_NDEBUG_UNUSED status; /* Error checking variable */ hsize_t dim[] = { F70_LENGTH }; /* Dataspace dimensions */ int m, n, o; /* Array init loop vars */ @@ -7959,14 +7999,16 @@ static void gent_compound_attr_intsizes(void) { int64_t dset64[F70_XDIM][F70_YDIM64]; double dsetdbl[F70_XDIM][F70_YDIM8]; } Array1Struct; - Array1Struct Array1[F70_LENGTH]; + Array1Struct *Array1 = NULL; hid_t Array1Structid; /* File datatype identifier */ - herr_t status; /* Error checking variable */ + herr_t H5_ATTR_NDEBUG_UNUSED status; /* Error checking variable */ hsize_t dim[] = { F70_LENGTH }; /* Dataspace dimensions */ int m, n, o; /* Array init loop vars */ + Array1 = (Array1Struct *)HDcalloc(F70_LENGTH, sizeof(Array1Struct)); + /* Initialize the data in the arrays/datastructure */ for (m = 0; m < F70_LENGTH; m++) { @@ -8198,6 +8240,8 @@ static void gent_compound_attr_intsizes(void) { status = H5Fclose(fid); HDassert(status >= 0); + + HDfree(Array1); } static void gent_nested_compound_dt(void) { /* test nested data type */ @@ -8838,7 +8882,7 @@ static void gent_compound_int_array(void) { Cmpd1Struct *Cmpd1; hid_t Cmpd1Structid; /* File datatype identifier */ - herr_t status; /* Error checking variable */ + herr_t H5_ATTR_NDEBUG_UNUSED status; /* Error checking variable */ hsize_t dim[] = { F76_LENGTH }; /* Dataspace dimensions */ int m, n; /* Array init loop vars */ @@ -9094,7 +9138,7 @@ static void gent_compound_ints(void) { hid_t Cmpd1Structid; /* File datatype identifier */ hid_t Cmpd2Structid; /* File datatype identifier */ - herr_t status; /* Error checking variable */ + herr_t H5_ATTR_NDEBUG_UNUSED status; /* Error checking variable */ hsize_t dim[] = { F77_LENGTH }; /* Dataspace dimensions */ int m; /* Array init loop vars */ @@ -9797,7 +9841,7 @@ static void gent_bitnopaquefields(void) uint64_t d; } s_t; - hid_t file, grp=-1, type=-1, space=-1, dset=-1; + hid_t file_id=H5I_INVALID_HID, grp=H5I_INVALID_HID, type=H5I_INVALID_HID, space=H5I_INVALID_HID, dset=H5I_INVALID_HID; size_t i; hsize_t nelmts = F80_DIM32; uint8_t buf[F80_DIM32]; /* bitfield, opaque */ @@ -9806,9 +9850,9 @@ static void gent_bitnopaquefields(void) uint64_t buf4[F80_DIM32]; /* bitfield, opaque */ s_t buf5[F80_DIM32]; /* compound */ - file = H5Fcreate(FILE80, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + file_id = H5Fcreate(FILE80, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if ((grp = H5Gcreate2(file, "bittypetests", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if ((grp = H5Gcreate2(file_id, "bittypetests", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { /* bitfield_1 */ if ((type = H5Tcopy(H5T_STD_B8LE)) >= 0) { if ((space = H5Screate_simple(1, &nelmts, NULL)) >= 0) { @@ -9872,7 +9916,7 @@ static void gent_bitnopaquefields(void) H5Gclose(grp); } - if ((grp = H5Gcreate2(file, "opaquetypetests", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if ((grp = H5Gcreate2(file_id, "opaquetypetests", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { /* opaque_1 */ if ((type = H5Tcreate(H5T_OPAQUE, 1)) >= 0) { if ((H5Tset_tag(type, "1-byte opaque type")) >= 0) { @@ -9908,7 +9952,7 @@ static void gent_bitnopaquefields(void) H5Gclose(grp); } - if ((grp = H5Gcreate2(file, "cmpdtypetests", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if ((grp = H5Gcreate2(file_id, "cmpdtypetests", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { /* compound_1 */ if ((type = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) >= 0) { H5Tinsert(type, "a", HOFFSET(s_t, a), H5T_STD_B8LE); @@ -9934,7 +9978,7 @@ static void gent_bitnopaquefields(void) H5Gclose(grp); } - H5Fclose(file); + H5Fclose(file_id); } /*------------------------------------------------------------------------- @@ -10033,9 +10077,9 @@ static void gent_compound_complex2(void) compound *buf; /* compound */ - hid_t file, type=-1, space=-1, dset=-1; + hid_t file, type=H5I_INVALID_HID, space=H5I_INVALID_HID, dset=H5I_INVALID_HID; hid_t dset_array_a, dset_array_b, dset_array_c; - hid_t cmpd_tid1 = -1, cmpd_tid2 = -1, cmpd_tid3 = -1; + hid_t cmpd_tid1 = H5I_INVALID_HID, cmpd_tid2 = H5I_INVALID_HID, cmpd_tid3 = H5I_INVALID_HID; size_t i; size_t j, k; unsigned dset_array_ndims; @@ -10321,7 +10365,7 @@ static void gent_vlenstr_array(void) }; const char *buffer[F83_DIM*F83_ARRAYDIM]; - hid_t file, type=-1, space=-1, dset=-1; + hid_t file, type=H5I_INVALID_HID, space=H5I_INVALID_HID, dset=H5I_INVALID_HID; hid_t cmpd_tid1, array_tid; int i, j; @@ -10396,7 +10440,8 @@ static void gent_udfilter(void) hsize_t dims1[RANK] = {DIM1,DIM2}; hsize_t chunk_dims[RANK] = {CDIM1,CDIM2}; int buf1[DIM1][DIM2]; - int i, j, n, ret; + int i, j, n; + int H5_ATTR_NDEBUG_UNUSED ret; for(i=n=0; i<DIM1; i++){ for(j=0; j<DIM2; j++){ @@ -10488,7 +10533,7 @@ H5Z_filter_dynlibud(unsigned int flags, size_t cd_nelmts, /* Subtract the original value with MULTIPLIER */ while(buf_left > 0) { char temp = *int_ptr; - H5_CHECKED_ASSIGN(*int_ptr, int8_t, temp - MULTIPLIER, int); + *int_ptr = (int8_t)(temp - MULTIPLIER); int_ptr++; buf_left -= sizeof(*int_ptr); } /* end while */ @@ -10497,7 +10542,7 @@ H5Z_filter_dynlibud(unsigned int flags, size_t cd_nelmts, /* Add the original value with MULTIPLIER */ while(buf_left > 0) { char temp = *int_ptr; - H5_CHECKED_ASSIGN(*int_ptr, int8_t, temp + MULTIPLIER, int); + *int_ptr = (int8_t)(temp + MULTIPLIER); int_ptr++; buf_left -= sizeof(*int_ptr); } /* end while */ @@ -10564,10 +10609,10 @@ static void gent_null_space_group(void) static void gent_err_attr_dspace(void) { - hid_t fid = -1; /* File identifier */ - hid_t fcpl = -1; /* File access property list */ - hid_t sid = -1; /* Dataspace identifier */ - hid_t aid = -1; /* Attribute identifier */ + hid_t fid = H5I_INVALID_HID; /* File identifier */ + hid_t fcpl = H5I_INVALID_HID; /* File access property list */ + hid_t sid = H5I_INVALID_HID; /* Dataspace identifier */ + hid_t aid = H5I_INVALID_HID; /* Attribute identifier */ hsize_t dims = 2; /* Dimensino size */ int wdata[2] = {7, 42}; /* The buffer to write */ int fd = -1; /* The file descriptor */ diff --git a/tools/test/h5format_convert/CMakeLists.txt b/tools/test/h5format_convert/CMakeLists.txt index 55d5623..9e49c4f 100644 --- a/tools/test/h5format_convert/CMakeLists.txt +++ b/tools/test/h5format_convert/CMakeLists.txt @@ -25,4 +25,6 @@ if (HDF5_BUILD_GENERATORS AND NOT ONLY_SHARED_LIBS) #add_test (NAME h5fc_gentest COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5fc_gentest>) endif () -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/tools/test/h5format_convert/h5fc_chk_idx.c b/tools/test/h5format_convert/h5fc_chk_idx.c index 8369668..ad1742b 100644 --- a/tools/test/h5format_convert/h5fc_chk_idx.c +++ b/tools/test/h5format_convert/h5fc_chk_idx.c @@ -45,8 +45,8 @@ main(int argc, char *argv[]) { char *fname = NULL; char *dname = NULL; - hid_t fid = -1; - hid_t did = -1; + hid_t fid = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; H5D_chunk_index_t idx_type; /* h5fc_chk_idx fname dname */ diff --git a/tools/test/h5format_convert/h5fc_gentest.c b/tools/test/h5format_convert/h5fc_gentest.c index b482dee..1e9e2cf 100644 --- a/tools/test/h5format_convert/h5fc_gentest.c +++ b/tools/test/h5format_convert/h5fc_gentest.c @@ -77,12 +77,12 @@ const char *FILENAME[] = { static void gen_non(const char *fname) { - hid_t fid = -1; /* file id */ - hid_t fcpl = -1; /* file creation property list */ - hid_t gid = -1; /* group id */ - hid_t sid = -1; /* space id */ - hid_t dcpl = -1; /* dataset creation property id */ - hid_t did1 = -1, did2 = -1; /* dataset id */ + hid_t fid = H5I_INVALID_HID; /* file id */ + hid_t fcpl = H5I_INVALID_HID; /* file creation property list */ + hid_t gid = H5I_INVALID_HID; /* group id */ + hid_t sid = H5I_INVALID_HID; /* space id */ + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property id */ + hid_t did1 = -1, did2 = H5I_INVALID_HID; /* dataset id */ hsize_t dims1[1] = {10}; /* dataset dimension */ hsize_t dims2[2] = {4, 6}; /* dataset dimension */ hsize_t max_dims[2]; /* maximum dataset dimension */ @@ -307,11 +307,11 @@ error: static void gen_edge(const char *fname) { - hid_t fid = -1; /* file id */ - hid_t fapl = -1; /* file access property list */ - hid_t sid = -1; /* dataspace id */ - hid_t dcpl = -1; /* dataset creation property id */ - hid_t did = -1; /* dataset id */ + hid_t fid = H5I_INVALID_HID; /* file id */ + hid_t fapl = H5I_INVALID_HID; /* file access property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace id */ + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property id */ + hid_t did = H5I_INVALID_HID; /* dataset id */ hsize_t dims2[2] = {12, 6}; /* Dataset dimensions */ hsize_t c_dims[2] = {5, 5}; /* Chunk dimensions */ float buf[12][6]; /* Buffer for writing data */ @@ -395,14 +395,14 @@ error: static void gen_err_level(const char *fname) { - hid_t fid = -1; /* file ID */ - hid_t fapl = -1; /* file access property list */ - hid_t fcpl = -1; /* file creation property list */ - hid_t sid = -1; /* dataspace id */ - hid_t dcpl = -1; /* dataset creation property list */ - hid_t did = -1; /* dataset ID */ - hid_t fsid = -1; /* file dataspace ID */ - hid_t msid = -1; /* memory dataspace ID */ + hid_t fid = H5I_INVALID_HID; /* file ID */ + hid_t fapl = H5I_INVALID_HID; /* file access property list */ + hid_t fcpl = H5I_INVALID_HID; /* file creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace id */ + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t did = H5I_INVALID_HID; /* dataset ID */ + hid_t fsid = H5I_INVALID_HID; /* file dataspace ID */ + hid_t msid = H5I_INVALID_HID; /* memory dataspace ID */ unsigned char *buf = NULL; /* buffer for data */ hsize_t dims[2] = {0, 1}; /* dataset dimension sizes */ hsize_t max_dims[2] = {1, H5S_UNLIMITED}; /* dataset maximum dimension sizes */ @@ -534,13 +534,13 @@ error: static void gen_ext(const char *fname, unsigned new_format, unsigned what) { - hid_t fid = -1; /* file id */ - hid_t fapl = -1; /* file access property list */ - hid_t fcpl = -1; /* file creation property list */ - hid_t gid = -1; /* group id */ - hid_t sid = -1; /* space id */ - hid_t dcpl = -1; /* dataset creation property id */ - hid_t did1 = -1, did2 = -1; /* dataset id */ + hid_t fid = H5I_INVALID_HID; /* file id */ + hid_t fapl = H5I_INVALID_HID; /* file access property list */ + hid_t fcpl = H5I_INVALID_HID; /* file creation property list */ + hid_t gid = H5I_INVALID_HID; /* group id */ + hid_t sid = H5I_INVALID_HID; /* space id */ + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property id */ + hid_t did1 = H5I_INVALID_HID, did2 = H5I_INVALID_HID; /* dataset id */ hsize_t dims1[1] = {10}; /* dataset dimension */ hsize_t dims2[2] = {4, 6}; /* dataset dimension */ hsize_t max_dims[2]; /* maximum dataset dimension */ diff --git a/tools/test/h5import/CMakeLists.txt b/tools/test/h5import/CMakeLists.txt index 9364683..a77ba00 100644 --- a/tools/test/h5import/CMakeLists.txt +++ b/tools/test/h5import/CMakeLists.txt @@ -15,4 +15,6 @@ else () endif () set_target_properties (h5importtest PROPERTIES FOLDER tools) -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/tools/test/h5jam/CMakeLists.txt b/tools/test/h5jam/CMakeLists.txt index 6fdf7b0..f00e781 100644 --- a/tools/test/h5jam/CMakeLists.txt +++ b/tools/test/h5jam/CMakeLists.txt @@ -36,4 +36,6 @@ else () endif () set_target_properties (tellub PROPERTIES FOLDER tools) -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/tools/test/h5jam/getub.c b/tools/test/h5jam/getub.c index 26a427d..f496a7a 100644 --- a/tools/test/h5jam/getub.c +++ b/tools/test/h5jam/getub.c @@ -81,7 +81,7 @@ parse_command_line(int argc, const char *argv[]) int main(int argc, const char *argv[]) { - int fd = -1; + int fd = H5I_INVALID_HID; unsigned size; char *filename = NULL; long res; diff --git a/tools/test/h5ls/CMakeLists.txt b/tools/test/h5ls/CMakeLists.txt index 0da03c5..abbe6d0 100644 --- a/tools/test/h5ls/CMakeLists.txt +++ b/tools/test/h5ls/CMakeLists.txt @@ -30,6 +30,8 @@ if (BUILD_SHARED_LIBS) ) endif () -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) -include (CMakeTestsVDS.cmake) + include (CMakeTestsVDS.cmake) +endif () diff --git a/tools/test/h5repack/CMakeLists.txt b/tools/test/h5repack/CMakeLists.txt index f81ce4f..5722354 100644 --- a/tools/test/h5repack/CMakeLists.txt +++ b/tools/test/h5repack/CMakeLists.txt @@ -98,4 +98,6 @@ if (HDF5_BUILD_GENERATORS AND NOT ONLY_SHARED_LIBS) #add_test (NAME h5repackgentest COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repackgentest>) endif () -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/tools/test/h5repack/h5repackgentest.c b/tools/test/h5repack/h5repackgentest.c index 77fb28a..a61d8d7 100644 --- a/tools/test/h5repack/h5repackgentest.c +++ b/tools/test/h5repack/h5repackgentest.c @@ -147,7 +147,7 @@ __make_file(const char *basename, struct external_def *ext, H5REPACKGENTEST_OOPS; } - space_id = H5Screate_simple(rank, dims, NULL); + space_id = H5Screate_simple((int)rank, dims, NULL); if (space_id == H5I_INVALID_HID) H5REPACKGENTEST_OOPS; @@ -296,7 +296,7 @@ generate_f32le(hbool_t external) { /* Generate values */ for (i = 0, k = 0, n = 0; i < dims[0]; i++) { for (j = 0; j < dims[1]; j++, k++, n++) { - wdata[k] = (float)(n * 801.1 * ((k % 5 == 1) ? (-1) : (1))); + wdata[k] = n * 801.1f * ((k % 5 == 1) ? (-1) : (1)); } } @@ -314,7 +314,6 @@ generate_f32le(hbool_t external) { int main(void) { int i = 0; - int ret_value = 0; for (i = 0; i < 2; i++) { hbool_t external = (i & 1) ? TRUE : FALSE; diff --git a/tools/test/h5repack/h5repacktst.c b/tools/test/h5repack/h5repacktst.c index f3e6cd3..2654685 100644 --- a/tools/test/h5repack/h5repacktst.c +++ b/tools/test/h5repack/h5repacktst.c @@ -1779,9 +1779,9 @@ error: static int make_testfiles(void) { - hid_t fid = -1; - hid_t fcpl = -1; /* File creation property list */ - hid_t fapl = -1; /* File access property list */ + hid_t fid = H5I_INVALID_HID; + hid_t fcpl = H5I_INVALID_HID; /* File creation property list */ + hid_t fapl = H5I_INVALID_HID; /* File access property list */ unsigned j; /* Local index variable */ /*------------------------------------------------------------------------- @@ -2210,12 +2210,12 @@ out: static int make_all_objects(hid_t loc_id) { - hid_t did = -1; - hid_t gid = -1; - hid_t tid = -1; - hid_t rid = -1; - hid_t sid = -1; - hid_t gcplid = -1; + hid_t did = H5I_INVALID_HID; + hid_t gid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + hid_t rid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t gcplid = H5I_INVALID_HID; hsize_t dims[1] = {2}; /* compound datatype */ typedef struct s_t @@ -2332,10 +2332,10 @@ out: static int make_attributes(hid_t loc_id) { - hid_t did = -1; - hid_t gid = -1; - hid_t rid = -1; - hid_t sid = -1; + hid_t did = H5I_INVALID_HID; + hid_t gid = H5I_INVALID_HID; + hid_t rid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; hsize_t dims[1] = {2}; /*------------------------------------------------------------------------- @@ -2403,8 +2403,8 @@ static int make_hlinks(hid_t loc_id) { hid_t g1id =- 1; - hid_t g2id = -1; - hid_t g3id = -1; + hid_t g2id = H5I_INVALID_HID; + hid_t g3id = H5I_INVALID_HID; hsize_t dims[2] = {3,2}; int buf[3][2] = {{1,1}, {1,2}, {2,2}}; @@ -2473,8 +2473,8 @@ out: static int make_szip(hid_t loc_id) { - hid_t dcpl = -1; /* dataset creation property list */ - hid_t sid = -1; /* dataspace ID */ + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ unsigned szip_options_mask = H5_SZIP_ALLOW_K13_OPTION_MASK | H5_SZIP_NN_OPTION_MASK; unsigned szip_pixels_per_block = 8; hsize_t dims[RANK] = {DIM1, DIM2}; @@ -2544,8 +2544,8 @@ out: static int make_deflate(hid_t loc_id) { - hid_t dcpl = -1; /* dataset creation property list */ - hid_t sid = -1; /* dataspace ID */ + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ hsize_t dims[RANK] = {DIM1,DIM2}; hsize_t chunk_dims[RANK] = {CDIM1,CDIM2}; int buf[DIM1][DIM2]; @@ -2684,8 +2684,8 @@ out: static int make_fletcher32(hid_t loc_id) { - hid_t dcpl = -1; /* dataset creation property list */ - hid_t sid = -1; /* dataspace ID */ + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ hsize_t dims[RANK]={DIM1,DIM2}; hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; int buf[DIM1][DIM2]; @@ -2751,10 +2751,10 @@ out: static int make_nbit(hid_t loc_id) { - hid_t dcpl = -1; /* dataset creation property list */ - hid_t sid = -1; /* dataspace ID */ - hid_t dtid = -1; - hid_t dsid = -1; + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ + hid_t dtid = H5I_INVALID_HID; + hid_t dsid = H5I_INVALID_HID; hsize_t dims[RANK]={DIM1,DIM2}; hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; int buf[DIM1][DIM2]; @@ -2832,10 +2832,10 @@ out: static int make_scaleoffset(hid_t loc_id) { - hid_t dcpl = -1; /* dataset creation property list */ - hid_t sid = -1; /* dataspace ID */ - hid_t dtid = -1; - hid_t dsid = -1; + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ + hid_t dtid = H5I_INVALID_HID; + hid_t dsid = H5I_INVALID_HID; hsize_t dims[RANK] = {DIM1,DIM2}; hsize_t chunk_dims[RANK] = {CDIM1,CDIM2}; int buf[DIM1][DIM2]; @@ -3077,11 +3077,11 @@ int make_early(void) { hsize_t dims[1] ={3000}; hsize_t cdims[1]={30}; - hid_t fid=-1; - hid_t did=-1; - hid_t sid=-1; - hid_t tid=-1; - hid_t dcpl=-1; + hid_t fid=H5I_INVALID_HID; + hid_t did=H5I_INVALID_HID; + hid_t sid=H5I_INVALID_HID; + hid_t tid=H5I_INVALID_HID; + hid_t dcpl=H5I_INVALID_HID; int i; char name[16]; int iter=100; @@ -3172,8 +3172,8 @@ out: static int make_layout(hid_t loc_id) { - hid_t dcpl=-1; /* dataset creation property list */ - hid_t sid=-1; /* dataspace ID */ + hid_t dcpl=H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid=H5I_INVALID_HID; /* dataspace ID */ hsize_t dims[RANK]={DIM1,DIM2}; hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; int buf[DIM1][DIM2]; @@ -3286,12 +3286,12 @@ static int make_layout2(hid_t loc_id) { - hid_t contig_dcpl = -1; /* dataset creation property list */ - hid_t chunked_dcpl = -1; /* dataset creation property list */ + hid_t contig_dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t chunked_dcpl = H5I_INVALID_HID; /* dataset creation property list */ int i, j, n; /* Local index variables */ int ret_value = -1; /* Return value */ - hid_t s_sid = -1; /* dataspace ID */ + hid_t s_sid = H5I_INVALID_HID; /* dataspace ID */ hsize_t s_dims[RANK] = {S_DIM1,S_DIM2}; /* Dataspace (< 1 k) */ hsize_t chunk_dims[RANK] = {S_DIM1/2, S_DIM2/2}; /* Dimension sizes for chunks */ @@ -3361,11 +3361,11 @@ out: static int make_layout3(hid_t loc_id) { - hid_t dcpl1=-1; /* dataset creation property list */ - hid_t dcpl2=-1; /* dataset creation property list */ - hid_t dcpl3=-1; /* dataset creation property list */ - hid_t sid1=-1; /* dataspace ID */ - hid_t sid2=-1; /* dataspace ID */ + hid_t dcpl1=H5I_INVALID_HID; /* dataset creation property list */ + hid_t dcpl2=H5I_INVALID_HID; /* dataset creation property list */ + hid_t dcpl3=H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid1=H5I_INVALID_HID; /* dataspace ID */ + hid_t sid2=H5I_INVALID_HID; /* dataspace ID */ hsize_t dims1[RANK]={DIM1_L3,DIM2_L3}; hsize_t dims2[RANK]={SDIM1_L3,SDIM2_L3}; hsize_t maxdims[RANK]={H5S_UNLIMITED, H5S_UNLIMITED}; @@ -3494,8 +3494,8 @@ out: static int make_fill(hid_t loc_id) { - hid_t did=-1; - hid_t sid=-1; + hid_t did=H5I_INVALID_HID; + hid_t sid=H5I_INVALID_HID; hid_t dcpl; hsize_t dims[2]={3,2}; int buf[3][2]= {{1,1},{1,2},{2,2}}; @@ -3547,9 +3547,9 @@ out: static int make_big(hid_t loc_id) { - hid_t did=-1; - hid_t f_sid=-1; - hid_t m_sid=-1; + hid_t did=H5I_INVALID_HID; + hid_t f_sid=H5I_INVALID_HID; + hid_t m_sid=H5I_INVALID_HID; hid_t tid; hid_t dcpl; hsize_t dims[1]={ H5TOOLS_MALLOCSIZE + 1}; /* dataset dimensions */ @@ -3628,8 +3628,8 @@ out: static int make_external(hid_t loc_id) { - hid_t did=-1; - hid_t sid=-1; + hid_t did=H5I_INVALID_HID; + hid_t sid=H5I_INVALID_HID; hid_t dcpl; int buf[2]={1,2}; hsize_t cur_size[1]; /* data space current size */ @@ -3682,12 +3682,12 @@ out: static int make_userblock(void) { - hid_t fid = -1; - hid_t fcpl = -1; - int fd = -1; /* File descriptor for writing userblock */ - char ub[USERBLOCK_SIZE]; /* User block data */ - ssize_t nwritten; /* # of bytes written */ - size_t u; /* Local index variable */ + hid_t fid = H5I_INVALID_HID; + hid_t fcpl = H5I_INVALID_HID; + int fd = -1; /* File descriptor for writing userblock */ + char ub[USERBLOCK_SIZE]; /* User block data */ + ssize_t H5_ATTR_NDEBUG_UNUSED nwritten; /* # of bytes written */ + size_t u; /* Local index variable */ /* Create file creation property list with userblock set */ if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) @@ -3744,12 +3744,12 @@ out: static int verify_userblock( const char* filename) { - hid_t fid = -1; - hid_t fcpl = -1; + hid_t fid = H5I_INVALID_HID; + hid_t fcpl = H5I_INVALID_HID; int fd = -1; /* File descriptor for writing userblock */ char ub[USERBLOCK_SIZE]; /* User block data */ hsize_t ub_size = 0; /* User block size */ - ssize_t nread; /* # of bytes read */ + ssize_t H5_ATTR_NDEBUG_UNUSED nread; /* # of bytes read */ size_t u; /* Local index variable */ /* Open file with userblock */ @@ -3816,7 +3816,7 @@ make_userblock_file(void) { int fd = -1; /* File descriptor for writing userblock */ char ub[USERBLOCK_SIZE]; /* User block data */ - ssize_t nwritten; /* # of bytes written */ + ssize_t H5_ATTR_NDEBUG_UNUSED nwritten; /* # of bytes written */ size_t u; /* Local index variable */ /* initialize userblock data */ @@ -3874,10 +3874,10 @@ int write_dset_in(hid_t loc_id, GREEN } e_t; - hid_t did=-1; - hid_t sid=-1; - hid_t tid=-1; - hid_t pid=-1; + hid_t did=H5I_INVALID_HID; + hid_t sid=H5I_INVALID_HID; + hid_t tid=H5I_INVALID_HID; + hid_t pid=H5I_INVALID_HID; unsigned i, j; int val, k, n; float f; @@ -4620,10 +4620,10 @@ out: static int make_dset_reg_ref(hid_t loc_id) { - hid_t did1=-1; /* Dataset ID */ - hid_t did2=-1; /* Dereferenced dataset ID */ - hid_t sid1=-1; /* Dataspace ID #1 */ - hid_t sid2=-1; /* Dataspace ID #2 */ + hid_t did1=H5I_INVALID_HID; /* Dataset ID */ + hid_t did2=H5I_INVALID_HID; /* Dereferenced dataset ID */ + hid_t sid1=H5I_INVALID_HID; /* Dataspace ID #1 */ + hid_t sid2=H5I_INVALID_HID; /* Dataspace ID #2 */ hsize_t dims1[] = {SPACE1_DIM1}; hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2}; hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */ @@ -4739,9 +4739,9 @@ int write_attr_in(hid_t loc_id, GREEN } e_t; - hid_t aid = -1; - hid_t sid = -1; - hid_t tid = -1; + hid_t aid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; int val, j, k, n; unsigned i; float f; @@ -4824,7 +4824,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_BITFIELD @@ -4854,7 +4854,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_OPAQUE @@ -4881,7 +4881,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_COMPOUND @@ -4919,7 +4919,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_REFERENCE @@ -4968,7 +4968,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_VLEN @@ -5013,13 +5013,13 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; if (H5Sclose(sid) < 0) goto out; - sid = -1; + sid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_ARRAY @@ -5054,7 +5054,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT @@ -5132,7 +5132,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_BITFIELD @@ -5165,7 +5165,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_OPAQUE @@ -5193,7 +5193,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_COMPOUND @@ -5229,7 +5229,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_REFERENCE @@ -5284,7 +5284,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_VLEN @@ -5335,13 +5335,13 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; if (H5Sclose(sid) < 0) goto out; - sid = -1; + sid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_ARRAY @@ -5384,7 +5384,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT @@ -5504,7 +5504,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_BITFIELD @@ -5558,7 +5558,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_OPAQUE @@ -5572,7 +5572,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_COMPOUND @@ -5658,7 +5658,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_REFERENCE @@ -5743,7 +5743,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_VLEN @@ -5797,13 +5797,13 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; if (H5Sclose(sid) < 0) goto out; - sid = -1; + sid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_ARRAY @@ -5837,7 +5837,7 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT @@ -5917,7 +5917,7 @@ int make_dset(hid_t loc_id, hid_t dcpl, void *buf) { - hid_t did=-1; + hid_t did=H5I_INVALID_HID; if ((did = H5Dcreate2(loc_id, name, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) return -1; @@ -5954,8 +5954,8 @@ int write_dset( hid_t loc_id, hid_t tid, void *buf ) { - hid_t did=-1; - hid_t sid=-1; + hid_t did=H5I_INVALID_HID; + hid_t sid=H5I_INVALID_HID; if ((sid = H5Screate_simple(rank, dims, NULL)) < 0) return -1; @@ -6040,11 +6040,11 @@ static int make_named_dtype(hid_t loc_id) { hsize_t dims[1] ={3}; - hid_t did=-1; - hid_t aid=-1; - hid_t sid=-1; - hid_t tid=-1; - hid_t gid=-1; + hid_t did=H5I_INVALID_HID; + hid_t aid=H5I_INVALID_HID; + hid_t sid=H5I_INVALID_HID; + hid_t tid=H5I_INVALID_HID; + hid_t gid=H5I_INVALID_HID; if ((sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; diff --git a/tools/test/h5stat/CMakeLists.txt b/tools/test/h5stat/CMakeLists.txt index 5c17fd5..0e2ee5e 100644 --- a/tools/test/h5stat/CMakeLists.txt +++ b/tools/test/h5stat/CMakeLists.txt @@ -14,4 +14,6 @@ if (HDF5_BUILD_GENERATORS AND NOT ONLY_SHARED_LIBS) #add_test (NAME h5stat_gentest COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5stat_gentest>) endif () -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/tools/test/h5stat/h5stat_gentest.c b/tools/test/h5stat/h5stat_gentest.c index 2edfcf6..0bf1001 100644 --- a/tools/test/h5stat/h5stat_gentest.c +++ b/tools/test/h5stat/h5stat_gentest.c @@ -54,14 +54,14 @@ static void gen_newgrat_file(const char *fname) { - hid_t fcpl = -1; /* File creation property */ - hid_t fapl = -1; /* File access property */ - hid_t fid = -1; /* File id */ - hid_t gid = -1; /* Group id */ - hid_t tid = -1; /* Datatype id */ - hid_t sid = -1; /* Dataspace id */ - hid_t attr_id = -1; /* Attribute id */ - hid_t did = -1; /* Dataset id */ + hid_t fcpl = H5I_INVALID_HID; /* File creation property */ + hid_t fapl = H5I_INVALID_HID; /* File access property */ + hid_t fid = H5I_INVALID_HID; /* File id */ + hid_t gid = H5I_INVALID_HID; /* Group id */ + hid_t tid = H5I_INVALID_HID; /* Datatype id */ + hid_t sid = H5I_INVALID_HID; /* Dataspace id */ + hid_t attr_id = H5I_INVALID_HID; /* Attribute id */ + hid_t did = H5I_INVALID_HID; /* Dataset id */ char name[30]; /* Group name */ char attrname[30]; /* Attribute name */ int i; /* Local index variable */ @@ -139,15 +139,15 @@ error: static void gen_threshold_file(const char *fname) { - hid_t fid = -1; /* File ID */ - hid_t sid0 = -1; /* Dataspace IDs */ - hid_t sid1 = -1; /* Dataspace IDs */ - hid_t sid2 = -1; /* Dataspace IDs */ - hid_t sid3 = -1; /* Dataspace IDs */ - hid_t sid4 = -1; /* Dataspace IDs */ - hid_t did = -1; /* Dataset ID */ - hid_t attr_id = -1; /* Attribute ID */ - hid_t gid = -1; /* Group ID */ + hid_t fid = H5I_INVALID_HID; /* File ID */ + hid_t sid0 = H5I_INVALID_HID; /* Dataspace IDs */ + hid_t sid1 = H5I_INVALID_HID; /* Dataspace IDs */ + hid_t sid2 = H5I_INVALID_HID; /* Dataspace IDs */ + hid_t sid3 = H5I_INVALID_HID; /* Dataspace IDs */ + hid_t sid4 = H5I_INVALID_HID; /* Dataspace IDs */ + hid_t did = H5I_INVALID_HID; /* Dataset ID */ + hid_t attr_id = H5I_INVALID_HID; /* Attribute ID */ + hid_t gid = H5I_INVALID_HID; /* Group ID */ hsize_t two_dims[] = {2, 5}; /* Dimension array */ hsize_t one_dims[] = {6}; /* Dimension array */ hsize_t zero_dims[] = {0}; /* Dimension array */ @@ -323,11 +323,11 @@ error: static void gen_idx_file(const char *fname) { - hid_t fapl = -1; /* file access property id */ - hid_t fid = -1; /* file id */ - hid_t sid = -1; /* space id */ - hid_t dcpl = -1; /* dataset creation property id */ - hid_t did = -1, did2 = -1; /* dataset id */ + hid_t fapl = H5I_INVALID_HID; /* file access property id */ + hid_t fid = H5I_INVALID_HID; /* file id */ + hid_t sid = H5I_INVALID_HID; /* space id */ + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property id */ + hid_t did = -1, did2 = H5I_INVALID_HID; /* dataset id */ hsize_t dims[1] = {10}; /* dataset dimension */ hsize_t c_dims[1] = {2}; /* chunk dimension */ int i; /* local index variable */ @@ -413,12 +413,12 @@ error: static void gen_err_refcount(const char *fname) { - hid_t fid = -1; /* File identifier */ - hid_t sid = -1; /* Dataspace message */ - hid_t did = -1; /* Dataset identifier */ - hid_t gid = -1; /* Group identifier */ - hid_t aid1 = -1, aid2 = -1; /* Attribute identifier */ - hid_t tid = -1; /* Datatype identifier */ + hid_t fid = H5I_INVALID_HID; /* File identifier */ + hid_t sid = H5I_INVALID_HID; /* Dataspace message */ + hid_t did = H5I_INVALID_HID; /* Dataset identifier */ + hid_t gid = H5I_INVALID_HID; /* Group identifier */ + hid_t aid1 = -1, aid2 = H5I_INVALID_HID; /* Attribute identifier */ + hid_t tid = H5I_INVALID_HID; /* Datatype identifier */ int i, n; /* Local index variables */ int buf[10]; /* Data buffer */ hsize_t dims[1]; /* Dimension size */ diff --git a/tools/test/misc/CMakeLists.txt b/tools/test/misc/CMakeLists.txt index a250222..089a302 100644 --- a/tools/test/misc/CMakeLists.txt +++ b/tools/test/misc/CMakeLists.txt @@ -55,6 +55,8 @@ else () endif () set_target_properties (clear_open_chk PROPERTIES FOLDER tools) -include (CMakeTestsRepart.cmake) -include (CMakeTestsClear.cmake) -include (CMakeTestsMkgrp.cmake) +if (HDF5_TEST_SERIAL) + include (CMakeTestsRepart.cmake) + include (CMakeTestsClear.cmake) + include (CMakeTestsMkgrp.cmake) +endif () diff --git a/tools/test/misc/h5clear_gentest.c b/tools/test/misc/h5clear_gentest.c index 96d7e75e7..1411c21 100644 --- a/tools/test/misc/h5clear_gentest.c +++ b/tools/test/misc/h5clear_gentest.c @@ -56,10 +56,10 @@ const char *FILENAME_ENHANCE[] = { static int gen_cache_image_file(const char *fname) { - hid_t fid = -1; /* File ID */ - hid_t did = -1, sid = -1; /* Dataset ID, dataspace ID */ - hid_t fapl = -1; /* File access property list */ - hid_t dcpl = -1; /* Dataset creation property list */ + hid_t fid = H5I_INVALID_HID; /* File ID */ + hid_t did = -1, sid = H5I_INVALID_HID; /* Dataset ID, dataspace ID */ + hid_t fapl = H5I_INVALID_HID; /* File access property list */ + hid_t dcpl = H5I_INVALID_HID; /* Dataset creation property list */ hsize_t dims[2]; /* Dimension sizes */ hsize_t chunks[2]; /* Chunked dimension sizes */ int buf[50][100]; /* Buffer for data to write */ @@ -164,10 +164,10 @@ error: static int gen_enhance_files(hbool_t user) { - hid_t fid = -1; /* File ID */ - hid_t fcpl = -1; /* File creation property list */ - hid_t sid = -1; /* Dataspace ID */ - hid_t did = -1; /* Dataset ID */ + hid_t fid = H5I_INVALID_HID; /* File ID */ + hid_t fcpl = H5I_INVALID_HID; /* File creation property list */ + hid_t sid = H5I_INVALID_HID; /* Dataspace ID */ + hid_t did = H5I_INVALID_HID; /* Dataset ID */ hsize_t dim[1]; /* Dimension sizes */ int data[NUM_ELMTS]; /* Buffer for data */ int fd = -1; /* The file descriptor ID */ @@ -361,13 +361,13 @@ error: int main(void) { - hid_t fid = -1; /* File ID */ - hid_t fcpl = -1; /* File creation property list */ - hid_t fapl = -1, new_fapl = -1; /* File access property lists */ + hid_t fid = H5I_INVALID_HID; /* File ID */ + hid_t fcpl = H5I_INVALID_HID; /* File creation property list */ + hid_t fapl = -1, new_fapl = H5I_INVALID_HID; /* File access property lists */ char fname[512]; /* File name */ unsigned new_format; /* To use latest library format or not */ - hid_t sid = -1; /* Dataspace ID */ - hid_t did = -1; /* Dataset ID */ + hid_t sid = H5I_INVALID_HID; /* Dataspace ID */ + hid_t did = H5I_INVALID_HID; /* Dataset ID */ hsize_t dim[1]; /* Dimension sizes */ int data[NUM_ELMTS]; /* Buffer for data */ int i; /* Local index variables */ diff --git a/tools/test/misc/h5repart_gentest.c b/tools/test/misc/h5repart_gentest.c index 5c1ff87..bd94104 100644 --- a/tools/test/misc/h5repart_gentest.c +++ b/tools/test/misc/h5repart_gentest.c @@ -25,7 +25,8 @@ #define FAMILY_SIZE 1024 #define FILENAME "family_file%05d.h5" -static int buf[FAMILY_NUMBER][FAMILY_SIZE]; +int **buf = NULL; +int *buf_data = NULL; int main(void) { @@ -34,66 +35,82 @@ int main(void) int i, j; hsize_t dims[2]={FAMILY_NUMBER, FAMILY_SIZE}; + /* Set up data array */ + if(NULL == (buf_data = (int *)HDcalloc(FAMILY_NUMBER * FAMILY_SIZE, sizeof(int)))) { + HDperror("HDcalloc"); + HDexit(EXIT_FAILURE); + } + if(NULL == (buf = (int **)HDcalloc(FAMILY_NUMBER, sizeof(buf_data)))) { + HDperror("HDcalloc"); + HDexit(EXIT_FAILURE); + } + for (i = 0; i < FAMILY_NUMBER; i++) + buf[i] = buf_data + (i * FAMILY_SIZE); + /* Set property list and file name for FAMILY driver */ - if ((fapl=H5Pcreate(H5P_FILE_ACCESS)) < 0) { - perror ("H5Pcreate"); - exit (EXIT_FAILURE); + if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) { + HDperror("H5Pcreate"); + HDexit(EXIT_FAILURE); } if(H5Pset_fapl_family(fapl, (hsize_t)FAMILY_SIZE, H5P_DEFAULT) < 0) { - perror ("H5Pset_fapl_family"); - exit (EXIT_FAILURE); + HDperror("H5Pset_fapl_family"); + HDexit(EXIT_FAILURE); } if((file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) { - perror("H5Fcreate"); - exit(EXIT_FAILURE); + HDperror("H5Fcreate"); + HDexit(EXIT_FAILURE); } /* Create and write dataset */ if((space = H5Screate_simple(2, dims, NULL)) < 0) { - perror("H5Screate_simple"); - exit(EXIT_FAILURE); + HDperror("H5Screate_simple"); + HDexit(EXIT_FAILURE); } if((dset = H5Dcreate2(file, dname, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) { - perror("H5Dcreate2"); - exit(EXIT_FAILURE); + HDperror("H5Dcreate2"); + HDexit(EXIT_FAILURE); } - for(i = 0; i<FAMILY_NUMBER; i++) - for(j = 0; j<FAMILY_SIZE; j++) + for(i = 0; i < FAMILY_NUMBER; i++) + for(j = 0; j < FAMILY_SIZE; j++) buf[i][j] = i * 10000 + j; - if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) { - perror("H5Dwrite"); - exit(EXIT_FAILURE); + if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_data) < 0) { + HDperror("H5Dwrite"); + HDexit(EXIT_FAILURE); } if(H5Sclose(space) < 0) { - perror ("H5Sclose"); - exit (EXIT_FAILURE); + HDperror("H5Sclose"); + HDexit(EXIT_FAILURE); } if(H5Dclose(dset) < 0) { - perror ("H5Dclose"); - exit (EXIT_FAILURE); + HDperror("H5Dclose"); + HDexit(EXIT_FAILURE); } if(H5Pclose(fapl) < 0) { - perror ("H5Pclose"); - exit (EXIT_FAILURE); + HDperror("H5Pclose"); + HDexit(EXIT_FAILURE); } if(H5Fclose(file) < 0) { - perror ("H5Fclose"); - exit (EXIT_FAILURE); + HDperror("H5Fclose"); + HDexit(EXIT_FAILURE); } - puts(" PASSED"); fflush(stdout); + HDfree(buf); + HDfree(buf_data); + + HDputs(" PASSED"); + HDfflush(stdout); - return 0; + return EXIT_SUCCESS; } diff --git a/tools/test/misc/repart_test.c b/tools/test/misc/repart_test.c index b8e0292..7227de0 100644 --- a/tools/test/misc/repart_test.c +++ b/tools/test/misc/repart_test.c @@ -47,8 +47,8 @@ herr_t test_single_h5repart_opens(void); herr_t test_family_h5repart_opens(void) { - hid_t fid = -1; - hid_t fapl_id = -1; + hid_t fid = H5I_INVALID_HID; + hid_t fapl_id = H5I_INVALID_HID; /* open 1st file(single member file) with correct family size(20000 byte) */ if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) @@ -102,7 +102,7 @@ error: herr_t test_single_h5repart_opens(void) { - hid_t fid = -1; + hid_t fid = H5I_INVALID_HID; /* open the single file */ if ((fid = H5Fopen(FILENAME[2], H5F_ACC_RDWR, H5P_DEFAULT)) < 0) diff --git a/tools/test/misc/talign.c b/tools/test/misc/talign.c index 7f1f038..c69d1f7 100644 --- a/tools/test/misc/talign.c +++ b/tools/test/misc/talign.c @@ -32,11 +32,11 @@ const char *setname = "align"; int main(void) { - hid_t fil=-1, spc=-1, set=-1; - hid_t cs6=-1, cmp=-1, fix=-1; - hid_t cmp1=-1, cmp2=-1, cmp3=-1; - hid_t plist=-1; - hid_t array_dt=-1; + hid_t fil=H5I_INVALID_HID, spc=H5I_INVALID_HID, set=H5I_INVALID_HID; + hid_t cs6=H5I_INVALID_HID, cmp=H5I_INVALID_HID, fix=H5I_INVALID_HID; + hid_t cmp1=H5I_INVALID_HID, cmp2=H5I_INVALID_HID, cmp3=H5I_INVALID_HID; + hid_t plist=H5I_INVALID_HID; + hid_t array_dt=H5I_INVALID_HID; hsize_t dim[2]; hsize_t cdim[4]; diff --git a/tools/test/misc/vds/UC_1_one_dim_gen.c b/tools/test/misc/vds/UC_1_one_dim_gen.c index b997280..b5ddae3 100644 --- a/tools/test/misc/vds/UC_1_one_dim_gen.c +++ b/tools/test/misc/vds/UC_1_one_dim_gen.c @@ -59,16 +59,16 @@ static int UC_1_VDS_FILL_VALUE = -9; int main(void) { - hid_t src_sid = -1; /* source dataset's dataspace ID */ - hid_t src_dcplid = -1; /* source dataset property list ID */ + hid_t src_sid = H5I_INVALID_HID; /* source dataset's dataspace ID */ + hid_t src_dcplid = H5I_INVALID_HID; /* source dataset property list ID */ - hid_t vds_sid = -1; /* VDS dataspace ID */ - hid_t vds_dcplid = -1; /* VDS dataset property list ID */ + hid_t vds_sid = H5I_INVALID_HID; /* VDS dataspace ID */ + hid_t vds_dcplid = H5I_INVALID_HID; /* VDS dataset property list ID */ - hid_t fid = -1; /* HDF5 file ID */ - hid_t did = -1; /* dataset ID */ - hid_t msid = -1; /* memory dataspace ID */ - hid_t fsid = -1; /* file dataspace ID */ + hid_t fid = H5I_INVALID_HID; /* HDF5 file ID */ + hid_t did = H5I_INVALID_HID; /* dataset ID */ + hid_t msid = H5I_INVALID_HID; /* memory dataspace ID */ + hid_t fsid = H5I_INVALID_HID; /* file dataspace ID */ hsize_t extent[RANK]; /* dataset extents */ hsize_t start[RANK]; /* starting point for hyperslab */ diff --git a/tools/test/misc/vds/UC_2_two_dims_gen.c b/tools/test/misc/vds/UC_2_two_dims_gen.c index bd70fda..8e1554b 100644 --- a/tools/test/misc/vds/UC_2_two_dims_gen.c +++ b/tools/test/misc/vds/UC_2_two_dims_gen.c @@ -68,16 +68,16 @@ static int UC_2_VDS_FILL_VALUE = -9; int main(void) { - hid_t src_sid = -1; /* source dataset's dataspace ID */ - hid_t src_dcplid = -1; /* source dataset property list ID */ + hid_t src_sid = H5I_INVALID_HID; /* source dataset's dataspace ID */ + hid_t src_dcplid = H5I_INVALID_HID; /* source dataset property list ID */ - hid_t vds_sid = -1; /* VDS dataspace ID */ - hid_t vds_dcplid = -1; /* VDS dataset property list ID */ + hid_t vds_sid = H5I_INVALID_HID; /* VDS dataspace ID */ + hid_t vds_dcplid = H5I_INVALID_HID; /* VDS dataset property list ID */ - hid_t fid = -1; /* HDF5 file ID */ - hid_t did = -1; /* dataset ID */ - hid_t msid = -1; /* memory dataspace ID */ - hid_t fsid = -1; /* file dataspace ID */ + hid_t fid = H5I_INVALID_HID; /* HDF5 file ID */ + hid_t did = H5I_INVALID_HID; /* dataset ID */ + hid_t msid = H5I_INVALID_HID; /* memory dataspace ID */ + hid_t fsid = H5I_INVALID_HID; /* file dataspace ID */ hsize_t start[RANK]; /* starting point for hyperslab */ hsize_t extent[RANK]; /* dataset extents */ diff --git a/tools/test/misc/vds/UC_3_gaps_gen.c b/tools/test/misc/vds/UC_3_gaps_gen.c index e6e7226..74a23dc 100644 --- a/tools/test/misc/vds/UC_3_gaps_gen.c +++ b/tools/test/misc/vds/UC_3_gaps_gen.c @@ -29,12 +29,12 @@ static herr_t create_3_1_vds(void) { - hid_t src_sid = -1; /* source dataset's dataspace ID */ - hid_t vds_sid = -1; /* VDS dataspace ID */ - hid_t vds_dcplid = -1; /* VDS dataset property list ID */ + hid_t src_sid = H5I_INVALID_HID; /* source dataset's dataspace ID */ + hid_t vds_sid = H5I_INVALID_HID; /* VDS dataspace ID */ + hid_t vds_dcplid = H5I_INVALID_HID; /* VDS dataset property list ID */ - hid_t fid = -1; /* HDF5 file ID */ - hid_t did = -1; /* dataset ID */ + hid_t fid = H5I_INVALID_HID; /* HDF5 file ID */ + hid_t did = H5I_INVALID_HID; /* dataset ID */ hsize_t start[RANK]; /* source starting point for hyperslab */ hsize_t position[RANK]; /* vds mapping positions */ @@ -136,12 +136,12 @@ error: static herr_t create_3_2_vds(void) { - hid_t src_sid = -1; /* source dataset's dataspace ID */ - hid_t vds_sid = -1; /* VDS dataspace ID */ - hid_t vds_dcplid = -1; /* VDS dataset property list ID */ + hid_t src_sid = H5I_INVALID_HID; /* source dataset's dataspace ID */ + hid_t vds_sid = H5I_INVALID_HID; /* VDS dataspace ID */ + hid_t vds_dcplid = H5I_INVALID_HID; /* VDS dataset property list ID */ - hid_t fid = -1; /* HDF5 file ID */ - hid_t did = -1; /* dataset ID */ + hid_t fid = H5I_INVALID_HID; /* HDF5 file ID */ + hid_t did = H5I_INVALID_HID; /* dataset ID */ hsize_t start[RANK]; /* source starting point for hyperslab */ diff --git a/tools/test/misc/vds/UC_4_printf_gen.c b/tools/test/misc/vds/UC_4_printf_gen.c index b328046..24451e9 100644 --- a/tools/test/misc/vds/UC_4_printf_gen.c +++ b/tools/test/misc/vds/UC_4_printf_gen.c @@ -27,16 +27,16 @@ int main(void) { - hid_t src_sid = -1; /* source dataset's dataspace ID */ - hid_t src_dcplid = -1; /* source dataset property list ID */ + hid_t src_sid = H5I_INVALID_HID; /* source dataset's dataspace ID */ + hid_t src_dcplid = H5I_INVALID_HID; /* source dataset property list ID */ - hid_t vds_sid = -1; /* VDS dataspace ID */ - hid_t vds_dcplid = -1; /* VDS dataset property list ID */ + hid_t vds_sid = H5I_INVALID_HID; /* VDS dataspace ID */ + hid_t vds_dcplid = H5I_INVALID_HID; /* VDS dataset property list ID */ - hid_t fid = -1; /* HDF5 file ID */ - hid_t did = -1; /* dataset ID */ - hid_t msid = -1; /* memory dataspace ID */ - hid_t fsid = -1; /* file dataspace ID */ + hid_t fid = H5I_INVALID_HID; /* HDF5 file ID */ + hid_t did = H5I_INVALID_HID; /* dataset ID */ + hid_t msid = H5I_INVALID_HID; /* memory dataspace ID */ + hid_t fsid = H5I_INVALID_HID; /* file dataspace ID */ /* Hyperslab arrays */ hsize_t start[RANK] = {0, 0, 0}; diff --git a/tools/test/misc/vds/UC_5_stride_gen.c b/tools/test/misc/vds/UC_5_stride_gen.c index a105bbd..726ce6e 100644 --- a/tools/test/misc/vds/UC_5_stride_gen.c +++ b/tools/test/misc/vds/UC_5_stride_gen.c @@ -27,16 +27,16 @@ int main(void) { - hid_t src_sid = -1; /* source dataset's dataspace ID */ - hid_t src_dcplid = -1; /* source dataset property list ID */ + hid_t src_sid = H5I_INVALID_HID; /* source dataset's dataspace ID */ + hid_t src_dcplid = H5I_INVALID_HID; /* source dataset property list ID */ - hid_t vds_sid = -1; /* VDS dataspace ID */ - hid_t vds_dcplid = -1; /* VDS dataset property list ID */ + hid_t vds_sid = H5I_INVALID_HID; /* VDS dataspace ID */ + hid_t vds_dcplid = H5I_INVALID_HID; /* VDS dataset property list ID */ - hid_t fid = -1; /* HDF5 file ID */ - hid_t did = -1; /* dataset ID */ - hid_t msid = -1; /* memory dataspace ID */ - hid_t fsid = -1; /* file dataspace ID */ + hid_t fid = H5I_INVALID_HID; /* HDF5 file ID */ + hid_t did = H5I_INVALID_HID; /* dataset ID */ + hid_t msid = H5I_INVALID_HID; /* memory dataspace ID */ + hid_t fsid = H5I_INVALID_HID; /* file dataspace ID */ hsize_t extent[RANK]; /* source dataset extents */ hsize_t start[RANK]; /* starting point for hyperslab */ diff --git a/tools/test/perform/CMakeLists.txt b/tools/test/perform/CMakeLists.txt index f250065..d788ffa 100644 --- a/tools/test/perform/CMakeLists.txt +++ b/tools/test/perform/CMakeLists.txt @@ -21,7 +21,7 @@ endif () set_target_properties (h5perf_serial PROPERTIES FOLDER perform) if (HDF5_BUILD_PERFORM_STANDALONE) - #-- Adding test for h5perf_serial_alone + #-- Adding test for h5perf_serial_alone - io_timer.c includes set (h5perf_serial_alone_SOURCES ${HDF5_TOOLS_DIR}/lib/io_timer.c ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/sio_perf.c @@ -32,10 +32,10 @@ if (HDF5_BUILD_PERFORM_STANDALONE) target_include_directories (h5perf_serial_alone PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};${HDF5_TOOLS_DIR}/lib;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") if (NOT BUILD_SHARED_LIBS) TARGET_C_PROPERTIES (h5perf_serial_alone STATIC) - target_link_libraries (h5perf_serial_alone PRIVATE ${HDF5_LIB_TARGET}) + target_link_libraries (h5perf_serial_alone PRIVATE ${HDF5_LIB_TARGET} "$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_LIBRARIES}>") else () TARGET_C_PROPERTIES (h5perf_serial_alone SHARED) - target_link_libraries (h5perf_serial_alone PRIVATE ${HDF5_LIBSH_TARGET}) + target_link_libraries (h5perf_serial_alone PRIVATE ${HDF5_LIBSH_TARGET} "$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_LIBRARIES}>") endif () set_target_properties (h5perf_serial_alone PROPERTIES FOLDER perform) set_property (TARGET h5perf_serial_alone @@ -133,7 +133,7 @@ else () endif () set_target_properties (zip_perf PROPERTIES FOLDER perform) -if (H5_HAVE_PARALLEL AND BUILD_TESTING) +if (H5_HAVE_PARALLEL AND HDF5_TEST_PARALLEL) if (UNIX) #-- Adding test for perf - only on unix systems set (perf_SOURCES @@ -191,4 +191,6 @@ if (H5_HAVE_PARALLEL AND BUILD_TESTING) endif () endif () -include (CMakeTests.cmake) +if (HDF5_TEST_TOOLS) + include (CMakeTests.cmake) +endif () diff --git a/tools/test/perform/CMakeTests.cmake b/tools/test/perform/CMakeTests.cmake index f0ae416..5d61f7b 100644 --- a/tools/test/perform/CMakeTests.cmake +++ b/tools/test/perform/CMakeTests.cmake @@ -22,175 +22,176 @@ add_custom_target(zip_perf_files ALL COMMENT "Copying files needed by zip_perf t #----------------------------------------------------------------------------- # Add Tests #----------------------------------------------------------------------------- +if (HDF5_TEST_SERIAL) + # Remove any output file left over from previous test run + add_test ( + NAME PERFORM_h5perform-clearall-objects + COMMAND ${CMAKE_COMMAND} + -E remove + chunk.h5 + iopipe.h5 + iopipe.raw + x-diag-rd.dat + x-diag-wr.dat + x-rowmaj-rd.dat + x-rowmaj-wr.dat + x-gnuplot + h5perf_serial.txt + h5perf_serial.txt.err + chunk.txt + chunk.txt.err + iopipe.txt + iopipe.txt.err + overhead.txt + overhead.txt.err + perf_meta.txt + perf_meta.txt.err + zip_perf-h.txt + zip_perf-h.txt.err + zip_perf.txt + zip_perf.txt.err + ) -# Remove any output file left over from previous test run -add_test ( - NAME PERFORM_h5perform-clearall-objects - COMMAND ${CMAKE_COMMAND} - -E remove - chunk.h5 - iopipe.h5 - iopipe.raw - x-diag-rd.dat - x-diag-wr.dat - x-rowmaj-rd.dat - x-rowmaj-wr.dat - x-gnuplot - h5perf_serial.txt - h5perf_serial.txt.err - chunk.txt - chunk.txt.err - iopipe.txt - iopipe.txt.err - overhead.txt - overhead.txt.err - perf_meta.txt - perf_meta.txt.err - zip_perf-h.txt - zip_perf-h.txt.err - zip_perf.txt - zip_perf.txt.err -) - -if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME PERFORM_h5perf_serial COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5perf_serial>) -else () - add_test (NAME PERFORM_h5perf_serial COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5perf_serial>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=h5perf_serial.txt" - #-D "TEST_REFERENCE=h5perf_serial.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME PERFORM_h5perf_serial COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5perf_serial>) + else () + add_test (NAME PERFORM_h5perf_serial COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5perf_serial>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=h5perf_serial.txt" + #-D "TEST_REFERENCE=h5perf_serial.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + set_tests_properties (PERFORM_h5perf_serial PROPERTIES + TIMEOUT ${CTEST_VERY_LONG_TIMEOUT} + DEPENDS "PERFORM_h5perform-clearall-objects" ) -endif () -set_tests_properties (PERFORM_h5perf_serial PROPERTIES - TIMEOUT ${CTEST_VERY_LONG_TIMEOUT} - DEPENDS "PERFORM_h5perform-clearall-objects" -) -if (HDF5_BUILD_PERFORM_STANDALONE) - add_test (NAME PERFORM_h5perf_serial_alone COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5perf_serial_alone>) -endif () + if (HDF5_BUILD_PERFORM_STANDALONE) + add_test (NAME PERFORM_h5perf_serial_alone COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5perf_serial_alone>) + endif () -if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME PERFORM_chunk COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:chunk>) -else () - add_test (NAME PERFORM_chunk COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:chunk>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=chunk.txt" - #-D "TEST_REFERENCE=chunk.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME PERFORM_chunk COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:chunk>) + else () + add_test (NAME PERFORM_chunk COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:chunk>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=chunk.txt" + #-D "TEST_REFERENCE=chunk.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + set_tests_properties (PERFORM_chunk PROPERTIES + DEPENDS "PERFORM_h5perform-clearall-objects" ) -endif () -set_tests_properties (PERFORM_chunk PROPERTIES - DEPENDS "PERFORM_h5perform-clearall-objects" -) -if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME PERFORM_iopipe COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:iopipe>) -else () - add_test (NAME PERFORM_iopipe COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:iopipe>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=iopipe.txt" - #-D "TEST_REFERENCE=iopipe.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME PERFORM_iopipe COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:iopipe>) + else () + add_test (NAME PERFORM_iopipe COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:iopipe>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=iopipe.txt" + #-D "TEST_REFERENCE=iopipe.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + set_tests_properties (PERFORM_iopipe PROPERTIES + DEPENDS "PERFORM_h5perform-clearall-objects" ) -endif () -set_tests_properties (PERFORM_iopipe PROPERTIES - DEPENDS "PERFORM_h5perform-clearall-objects" -) -if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME PERFORM_overhead COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:overhead>) -else () - add_test (NAME PERFORM_overhead COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:overhead>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=overhead.txt" - #-D "TEST_REFERENCE=overhead.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME PERFORM_overhead COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:overhead>) + else () + add_test (NAME PERFORM_overhead COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:overhead>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=overhead.txt" + #-D "TEST_REFERENCE=overhead.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + set_tests_properties (PERFORM_overhead PROPERTIES + DEPENDS "PERFORM_h5perform-clearall-objects" ) -endif () -set_tests_properties (PERFORM_overhead PROPERTIES - DEPENDS "PERFORM_h5perform-clearall-objects" -) -if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME PERFORM_perf_meta COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:perf_meta>) -else () - add_test (NAME PERFORM_perf_meta COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:perf_meta>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=perf_meta.txt" - #-D "TEST_REFERENCE=perf_meta.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME PERFORM_perf_meta COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:perf_meta>) + else () + add_test (NAME PERFORM_perf_meta COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:perf_meta>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=perf_meta.txt" + #-D "TEST_REFERENCE=perf_meta.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + set_tests_properties (PERFORM_perf_meta PROPERTIES + DEPENDS "PERFORM_h5perform-clearall-objects" ) -endif () -set_tests_properties (PERFORM_perf_meta PROPERTIES - DEPENDS "PERFORM_h5perform-clearall-objects" -) -if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME PERFORM_zip_perf_help COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:zip_perf> "-h") -else () - add_test (NAME PERFORM_zip_perf_help COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:zip_perf>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=zip_perf-h.txt" - #-D "TEST_REFERENCE=zip_perf-h.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME PERFORM_zip_perf_help COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:zip_perf> "-h") + else () + add_test (NAME PERFORM_zip_perf_help COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:zip_perf>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=zip_perf-h.txt" + #-D "TEST_REFERENCE=zip_perf-h.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + set_tests_properties (PERFORM_zip_perf_help PROPERTIES + DEPENDS "PERFORM_h5perform-clearall-objects" ) -endif () -set_tests_properties (PERFORM_zip_perf_help PROPERTIES - DEPENDS "PERFORM_h5perform-clearall-objects" -) -if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME PERFORM_zip_perf COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:zip_perf> tfilters.h5) -else () - add_test (NAME PERFORM_zip_perf COMMAND "${CMAKE_COMMAND}" - -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:zip_perf>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=zip_perf.txt" - #-D "TEST_REFERENCE=zip_perf.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME PERFORM_zip_perf COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:zip_perf> tfilters.h5) + else () + add_test (NAME PERFORM_zip_perf COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:zip_perf>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=zip_perf.txt" + #-D "TEST_REFERENCE=zip_perf.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + set_tests_properties (PERFORM_zip_perf PROPERTIES + DEPENDS "PERFORM_zip_perf_help;PERFORM_h5perform-clearall-objects" ) endif () -set_tests_properties (PERFORM_zip_perf PROPERTIES - DEPENDS "PERFORM_zip_perf_help;PERFORM_h5perform-clearall-objects" -) -if (H5_HAVE_PARALLEL) +if (H5_HAVE_PARALLEL AND HDF5_TEST_PARALLEL) if (UNIX) add_test (NAME MPI_TEST_PERFORM_perf COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:perf> ${MPIEXEC_POSTFLAGS}) endif () diff --git a/tools/test/perform/chunk.c b/tools/test/perform/chunk.c index 804f88e..3603c9b 100644 --- a/tools/test/perform/chunk.c +++ b/tools/test/perform/chunk.c @@ -72,7 +72,7 @@ /* #define DIAG_NRDCC 521 */ static size_t nio_g; -static hid_t fapl_g = -1; +static hid_t fapl_g = H5I_INVALID_HID; /* Local function prototypes */ static size_t diff --git a/tools/test/perform/chunk_cache.c b/tools/test/perform/chunk_cache.c index 1d2e791..5557558 100644 --- a/tools/test/perform/chunk_cache.c +++ b/tools/test/perform/chunk_cache.c @@ -247,7 +247,8 @@ static int check_partial_chunks_perf(hid_t file) dataset = H5Dopen2 (file, DSET1_NAME, dapl); - memspace = H5Screate_simple(row_rank, row_dim, NULL); + H5_CHECK_OVERFLOW(row_rank, hsize_t, int); + memspace = H5Screate_simple((int)row_rank, row_dim, NULL); filespace = H5Dget_space(dataset); nbytes_global = 0; @@ -256,7 +257,7 @@ static int check_partial_chunks_perf(hid_t file) /* Read the data row by row */ for(i = 0; i < DSET1_DIM1; i++) { - start[0] = i; + start[0] = (hsize_t)i; if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0) goto error; @@ -318,7 +319,9 @@ static int check_hash_value_perf(hid_t file) if((dataset = H5Dopen2 (file, DSET2_NAME, dapl)) < 0) goto error; - if((memspace = H5Screate_simple(column_rank, column_dim, NULL)) < 0) + + H5_CHECK_OVERFLOW(column_rank, hsize_t, int); + if((memspace = H5Screate_simple((int)column_rank, column_dim, NULL)) < 0) goto error; if((filespace = H5Dget_space(dataset)) < 0) goto error; @@ -329,7 +332,7 @@ static int check_hash_value_perf(hid_t file) /* Read the data column by column */ for(i = 0; i < DSET2_DIM2; i++) { - start[1] = i; + start[1] = (hsize_t)i; if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0) goto error; diff --git a/tools/test/perform/iopipe.c b/tools/test/perform/iopipe.c index 2d9c44f..bf4728d 100644 --- a/tools/test/perform/iopipe.c +++ b/tools/test/perform/iopipe.c @@ -133,7 +133,7 @@ synchronize (void) #if defined(H5_HAVE_WIN32_API) && ! defined(__CYGWIN__) _flushall(); #else - int status; + int H5_ATTR_NDEBUG_UNUSED status; status = HDsystem("sync"); HDassert(status >= 0); @@ -168,8 +168,7 @@ main (void) static unsigned nread = NREAD_REQUESTS, nwrite = NWRITE_REQUESTS; unsigned char *the_data = NULL; - hid_t file, dset, file_space = -1; - herr_t status; + hid_t file, dset, file_space = H5I_INVALID_HID; #ifdef H5_HAVE_GETRUSAGE struct rusage r_start, r_stop; #else @@ -178,8 +177,9 @@ main (void) struct timeval t_start, t_stop; int fd; unsigned u; - hssize_t n; - off_t offset; + herr_t H5_ATTR_NDEBUG_UNUSED status; + hssize_t H5_ATTR_NDEBUG_UNUSED n; + off_t H5_ATTR_NDEBUG_UNUSED offset; hsize_t start[2]; hsize_t count[2]; @@ -198,15 +198,15 @@ main (void) /* Open the files */ file = H5Fcreate (HDF5_FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - assert (file>=0); + HDassert (file>=0); fd = HDopen (RAW_FILE_NAME, O_RDWR|O_CREAT|O_TRUNC, 0666); - assert (fd>=0); + HDassert (fd>=0); /* Create the dataset */ file_space = H5Screate_simple (2, size, size); - assert(file_space >= 0); + HDassert(file_space >= 0); dset = H5Dcreate2(file, "dset", H5T_NATIVE_UCHAR, file_space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - assert(dset >= 0); + HDassert(dset >= 0); the_data = (unsigned char *)malloc((size_t)(size[0] * size[1])); /* initial fill for lazy malloc */ @@ -268,7 +268,7 @@ main (void) HDfflush(stderr); status = H5Dread (dset, H5T_NATIVE_UCHAR, file_space, file_space, H5P_DEFAULT, the_data); - assert (status>=0); + HDassert (status>=0); } #ifdef H5_HAVE_GETRUSAGE HDgetrusage(RUSAGE_SELF, &r_stop); @@ -306,9 +306,9 @@ main (void) putc (PROGRESS, stderr); HDfflush(stderr); offset = HDlseek (fd, (off_t)0, SEEK_SET); - assert (0==offset); + HDassert (0==offset); n = HDwrite (fd, the_data, (size_t)(size[0]*size[1])); - assert (n>=0 && (size_t)n==size[0]*size[1]); + HDassert (n>=0 && (size_t)n==size[0]*size[1]); } #ifdef H5_HAVE_GETRUSAGE HDgetrusage(RUSAGE_SELF, &r_stop); @@ -347,7 +347,7 @@ main (void) HDfflush(stderr); status = H5Dwrite (dset, H5T_NATIVE_UCHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, the_data); - assert (status>=0); + HDassert (status>=0); } #ifdef H5_HAVE_GETRUSAGE HDgetrusage(RUSAGE_SELF, &r_stop); @@ -385,9 +385,9 @@ main (void) putc (PROGRESS, stderr); HDfflush(stderr); offset = HDlseek (fd, (off_t)0, SEEK_SET); - assert (0==offset); + HDassert (0==offset); n = HDread (fd, the_data, (size_t)(size[0]*size[1])); - assert (n>=0 && (size_t)n==size[0]*size[1]); + HDassert (n>=0 && (size_t)n==size[0]*size[1]); } #ifdef H5_HAVE_GETRUSAGE HDgetrusage(RUSAGE_SELF, &r_stop); @@ -427,7 +427,7 @@ main (void) HDfflush(stderr); status = H5Dread (dset, H5T_NATIVE_UCHAR, file_space, file_space, H5P_DEFAULT, the_data); - assert (status>=0); + HDassert (status>=0); } #ifdef H5_HAVE_GETRUSAGE HDgetrusage(RUSAGE_SELF, &r_stop); @@ -449,11 +449,11 @@ main (void) (size_t)(nread*size[0]*size[1])); /* Read hyperslab */ - assert (size[0]>20 && size[1]>20); + HDassert (size[0]>20 && size[1]>20); start[0] = start[1] = 10; count[0] = count[1] = size[0]-20; status = H5Sselect_hyperslab (file_space, H5S_SELECT_SET, start, NULL, count, NULL); - assert (status>=0); + HDassert (status>=0); synchronize (); #ifdef H5_HAVE_GETRUSAGE HDgetrusage(RUSAGE_SELF, &r_start); @@ -471,7 +471,7 @@ main (void) HDfflush(stderr); status = H5Dread (dset, H5T_NATIVE_UCHAR, file_space, file_space, H5P_DEFAULT, the_data); - assert (status>=0); + HDassert (status>=0); } #ifdef H5_HAVE_GETRUSAGE HDgetrusage(RUSAGE_SELF, &r_stop); diff --git a/tools/test/perform/perf.c b/tools/test/perform/perf.c index 34b8a2d..3f56d8b 100644 --- a/tools/test/perform/perf.c +++ b/tools/test/perform/perf.c @@ -110,15 +110,13 @@ const char *FILENAME[] = { /* function prototypes */ static int parse_args(int argc, char **argv); -extern int errno; - /* globals needed for getopt */ extern char *optarg; int main(int argc, char **argv) { - char *buf, *tmp, *buf2, *tmp2, *check; - int i, j, mynod=0, nprocs=1, err, my_correct = 1, correct, myerrno; + char *buf, *tmp, *buf2 = NULL, *tmp2 = NULL, *check; + int i, j, mynod=0, nprocs=1, my_correct = 1, correct, myerrno; double stim, etim; double write_tim = 0; double read_tim = 0; @@ -127,10 +125,6 @@ int main(int argc, char **argv) double min_read_tim, min_write_tim; double ave_read_tim, ave_write_tim; int64_t iter_jump = 0; - int64_t seek_position = 0; - MPI_File fh; - MPI_Status status; - int nchars; char filename[MAX_PATH]; herr_t ret; /* Generic return value */ @@ -164,7 +158,7 @@ int main(int argc, char **argv) iter_jump = nprocs * opt_block; /* setup a buffer of data to write */ - if (!(tmp = (char *) malloc(opt_block + 256))) { + if (!(tmp = (char *) malloc((size_t)opt_block + 256))) { perror("malloc"); goto die_jar_jar_die; } @@ -172,7 +166,7 @@ int main(int argc, char **argv) if (opt_correct) { /* do the same buffer setup for verifiable data */ - if (!(tmp2 = (char *) malloc(opt_block + 256))) { + if (!(tmp2 = (char *) malloc((size_t)opt_block + 256))) { perror("malloc2"); goto die_jar_jar_die; } @@ -222,7 +216,7 @@ int main(int argc, char **argv) VRFY((fid >= 0), "H5Fcreate succeeded", H5FATAL); /* define a contiquous dataset of opt_iter*nprocs*opt_block chars */ - dims[0] = opt_iter * nprocs * opt_block; + dims[0] = (hsize_t)opt_iter * (hsize_t)nprocs * (hsize_t)opt_block; sid = H5Screate_simple(RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded", H5FATAL); dataset = H5Dcreate2(fid, "Dataset1", H5T_NATIVE_CHAR, sid, @@ -230,7 +224,7 @@ int main(int argc, char **argv) VRFY((dataset >= 0), "H5Dcreate2 succeeded", H5FATAL); /* create the memory dataspace and the file dataspace */ - dims[0] = opt_block; + dims[0] = (hsize_t)opt_block; mem_dataspace = H5Screate_simple(RANK, dims, NULL); VRFY((mem_dataspace >= 0), "", H5FATAL); file_dataspace = H5Dget_space(dataset); @@ -242,7 +236,7 @@ int main(int argc, char **argv) for(j=0; j < opt_iter; j++) { /* setup a file dataspace selection */ start[0] = (hsize_t)((j * iter_jump) + (mynod * opt_block)); - stride[0] = block[0] = opt_block; + stride[0] = block[0] = (hsize_t)opt_block; count[0]= 1; ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block); VRFY((ret >= 0), "H5Sset_hyperslab succeeded", H5FATAL); @@ -295,7 +289,7 @@ int main(int argc, char **argv) for (j=0; j < opt_iter; j++) { /* setup a file dataspace selection */ start[0] = (hsize_t)((j * iter_jump) + (mynod * opt_block)); - stride[0] = block[0] = opt_block; + stride[0] = block[0] = (hsize_t)opt_block; count[0]= 1; ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block); VRFY((ret >= 0), "H5Sset_hyperslab succeeded", H5FATAL); @@ -326,7 +320,7 @@ int main(int argc, char **argv) /* if the user wanted to check correctness, compare the write * buffer to the read buffer */ - if (opt_correct && memcmp(buf, buf2, opt_block)) { + if (opt_correct && memcmp(buf, buf2, (size_t)opt_block)) { HDfprintf(stderr, "node %d, correctness test failed\n", mynod); my_correct = 0; MPI_Allreduce(&my_correct, &correct, 1, MPI_INT, MPI_MIN, @@ -367,8 +361,8 @@ int main(int argc, char **argv) /* print out the results on one node */ if (mynod == 0) { - read_bw = ((int64_t)(opt_block*nprocs*opt_iter))/(max_read_tim*1000000.0); - write_bw = ((int64_t)(opt_block*nprocs*opt_iter))/(max_write_tim*1000000.0); + read_bw = (double)((int64_t)(opt_block*nprocs*opt_iter))/(max_read_tim*1000000.0); + write_bw = (double)((int64_t)(opt_block*nprocs*opt_iter))/(max_write_tim*1000000.0); printf("nr_procs = %d, nr_iter = %d, blk_sz = %ld\n", nprocs, opt_iter, (long)opt_block); @@ -439,9 +433,9 @@ parse_args(int argc, char **argv) { char *p; - opt_alignment = HDatoi(optarg); + opt_alignment = (hsize_t)HDatoi(optarg); if(NULL != (p = (char*)HDstrchr(optarg, '/'))) - opt_threshold = HDatoi(p + 1); + opt_threshold = (hsize_t)HDatoi(p + 1); } HDfprintf(stdout, "alignment/threshold=%Hu/%Hu\n", diff --git a/tools/test/perform/pio_engine.c b/tools/test/perform/pio_engine.c index 5d8474b..8bc522f 100644 --- a/tools/test/perform/pio_engine.c +++ b/tools/test/perform/pio_engine.c @@ -54,24 +54,15 @@ /* sizes of various items. these sizes won't change during program execution */ /* The following three must have the same type */ -#define ELMT_SIZE (sizeof(unsigned char)) /* we're doing bytes */ -#define ELMT_MPI_TYPE MPI_BYTE #define ELMT_H5_TYPE H5T_NATIVE_UCHAR #define GOTOERROR(errcode) { ret_code = errcode; goto done; } -#define GOTODONE { goto done; } #define ERRMSG(mesg) { \ HDfprintf(stderr, "Proc %d: ", pio_mpi_rank_g); \ HDfprintf(stderr, "*** Assertion failed (%s) at line %4d in %s\n", \ mesg, (int)__LINE__, __FILE__); \ } -#define MSG(mesg) { \ - HDfprintf(stderr, "Proc %d: ", pio_mpi_rank_g); \ - HDfprintf(stderr, "(%s) at line %4d in %s\n", \ - mesg, (int)__LINE__, __FILE__); \ -} - /* verify: if val is false (0), print mesg. */ #define VRFY(val, mesg) do { \ if (!val) { \ @@ -260,7 +251,7 @@ do_pio(parameters param) } if (!param.dim2d){ - if(((snbytes/pio_mpi_nprocs_g)%buf_size)!=0) { + if(((size_t)(snbytes/pio_mpi_nprocs_g)%buf_size)!=0) { HDfprintf(stderr, "Dataset size/process (%" H5_PRINTF_LL_WIDTH "d) must be a multiple of the " "trasfer buffer size (%zu)\n", @@ -269,7 +260,7 @@ do_pio(parameters param) } } else { - if((snbytes%buf_size)!=0) { + if(((size_t)snbytes%buf_size)!=0) { HDfprintf(stderr, "Dataset side size (%" H5_PRINTF_LL_WIDTH "d) must be a multiple of the " "trasfer buffer size (%zu)\n", @@ -557,16 +548,16 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, /* HDF5 variables */ herr_t hrc; /*HDF5 return code */ hsize_t h5dims[2]; /*dataset dim sizes */ - hid_t h5dset_space_id = -1; /*dataset space ID */ - hid_t h5mem_space_id = -1; /*memory dataspace ID */ - hid_t h5ds_id = -1; /*dataset handle */ + hid_t h5dset_space_id = H5I_INVALID_HID; /*dataset space ID */ + hid_t h5mem_space_id = H5I_INVALID_HID; /*memory dataspace ID */ + hid_t h5ds_id = H5I_INVALID_HID; /*dataset handle */ hsize_t h5block[2]; /*dataspace selection */ hsize_t h5stride[2]; hsize_t h5count[2]; hsize_t h5start[2]; hssize_t h5offset[2]; /* Selection offset within dataspace */ - hid_t h5dcpl = -1; /* Dataset creation property list */ - hid_t h5dxpl = -1; /* Dataset transfer property list */ + hid_t h5dcpl = H5I_INVALID_HID; /* Dataset creation property list */ + hid_t h5dxpl = H5I_INVALID_HID; /* Dataset transfer property list */ /* Get the parameters from the parameter block */ blk_size=parms->blk_size; @@ -589,7 +580,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, } /* end if */ /* Interleaved Pattern: */ else { - bytes_begin[0] = (off_t)(blk_size*pio_mpi_rank_g); + bytes_begin[0] = (off_t)(blk_size*(size_t)pio_mpi_rank_g); } /* end else */ /* Prepare buffer for verifying data */ @@ -613,9 +604,9 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, bytes_begin[0] = 0; if(!parms->h5_use_chunks || parms->io_type==PHDF5) - bytes_begin[1] = (off_t)(blk_size*pio_mpi_rank_g); + bytes_begin[1] = (off_t)(blk_size*(size_t)pio_mpi_rank_g); else - bytes_begin[1] = (off_t)(blk_size*blk_size*pio_mpi_rank_g); + bytes_begin[1] = (off_t)(blk_size*blk_size*(size_t)pio_mpi_rank_g); } /* end else */ /* Prepare buffer for verifying data */ @@ -693,7 +684,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_COMMIT"); /* Build contiguous file's derived type */ - mrc = MPI_Type_vector((int)blk_size, (int)1, (int)(snbytes/buf_size), + mrc = MPI_Type_vector((int)blk_size, (int)1, (int)((size_t)snbytes/buf_size), mpi_partial_buffer_cont, &mpi_cont_type); VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_CREATE"); @@ -711,7 +702,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_COMMIT"); /* Build interleaved file's derived type */ - mrc = MPI_Type_vector((int)buf_size, (int)1, (int)(snbytes/blk_size), + mrc = MPI_Type_vector((int)buf_size, (int)1, (int)((size_t)snbytes/blk_size), mpi_partial_buffer_inter, &mpi_inter_type); VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_CREATE"); @@ -738,7 +729,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_COMMIT"); /* Build chunk interleaved file's derived type */ - mrc = MPI_Type_vector((int)(buf_size/blk_size), (int)1, (int)(snbytes/blk_size), + mrc = MPI_Type_vector((int)(buf_size/blk_size), (int)1, (int)((size_t)snbytes/blk_size), mpi_full_chunk, &mpi_chunk_inter_type); VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_CREATE"); @@ -754,22 +745,22 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, if (!parms->dim2d){ if(nbytes>0) { /* define a contiguous dataset of nbytes native bytes */ - h5dims[0] = nbytes; + h5dims[0] = (hsize_t)nbytes; h5dset_space_id = H5Screate_simple(1, h5dims, NULL); VRFY((h5dset_space_id >= 0), "H5Screate_simple"); /* Set up the file dset space id to select the pattern to access */ if (!parms->interleaved){ /* Contiguous pattern */ - h5start[0] = bytes_begin[0]; + h5start[0] = (hsize_t)bytes_begin[0]; h5stride[0] = h5block[0] = blk_size; h5count[0] = buf_size/blk_size; } /* end if */ else { /* Interleaved access pattern */ /* Skip offset over blocks of other processes */ - h5start[0] = bytes_begin[0]; - h5stride[0] = blk_size*pio_mpi_nprocs_g; + h5start[0] = (hsize_t)bytes_begin[0]; + h5stride[0] = blk_size*(size_t)pio_mpi_nprocs_g; h5block[0] = blk_size; h5count[0] = buf_size/blk_size; } /* end else */ @@ -797,16 +788,16 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, else { if(nbytes>0) { /* define a contiguous dataset of nbytes native bytes */ - h5dims[0] = snbytes; - h5dims[1] = snbytes; + h5dims[0] = (hsize_t)snbytes; + h5dims[1] = (hsize_t)snbytes; h5dset_space_id = H5Screate_simple(2, h5dims, NULL); VRFY((h5dset_space_id >= 0), "H5Screate_simple"); /* Set up the file dset space id to select the pattern to access */ if (!parms->interleaved){ /* Contiguous pattern */ - h5start[0] = bytes_begin[0]; - h5start[1] = bytes_begin[1]; + h5start[0] = (hsize_t)bytes_begin[0]; + h5start[1] = (hsize_t)bytes_begin[1]; h5stride[0] = 1; h5stride[1] = h5block[0] = h5block[1] = blk_size; h5count[0] = 1; @@ -815,10 +806,10 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, else { /* Interleaved access pattern */ /* Skip offset over blocks of other processes */ - h5start[0] = bytes_begin[0]; - h5start[1] = bytes_begin[1]; + h5start[0] = (hsize_t)bytes_begin[0]; + h5start[1] = (hsize_t)bytes_begin[1]; h5stride[0] = blk_size; - h5stride[1] = blk_size*pio_mpi_nprocs_g; + h5stride[1] = blk_size*(size_t)pio_mpi_nprocs_g; h5block[0] = h5block[1] = blk_size; h5count[0] = buf_size/blk_size; h5count[1] = 1; @@ -982,7 +973,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((rc != 0), "POSIXWRITE"); /* Advance global offset in dataset */ - nbytes_xfer+=buf_size; + nbytes_xfer+=(ssize_t)buf_size; } /* end if */ /* Interleaved access pattern */ else { @@ -1011,7 +1002,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, buf_p+=blk_size; /* Advance global offset in dataset */ - nbytes_xfer+=blk_size; + nbytes_xfer+=(ssize_t)blk_size; /* Decrement number of bytes left this time */ nbytes_toxfer-=blk_size; @@ -1025,8 +1016,8 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, /* Contiguous access pattern */ if (!parms->interleaved) { /* Compute file offset */ - file_offset=posix_file_offset+(off_t)(((nbytes_xfer/blk_size) - /snbytes)*(blk_size*snbytes)+((nbytes_xfer/blk_size)%snbytes)); + file_offset=posix_file_offset+(off_t)((((size_t)nbytes_xfer/blk_size) + /(size_t)snbytes)*(blk_size*(size_t)snbytes)+(((size_t)nbytes_xfer/blk_size)%(size_t)snbytes)); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = buf_size; @@ -1037,9 +1028,9 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, /* Interleaved access pattern */ else { /* Compute file offset */ - file_offset=posix_file_offset+(off_t)((((nbytes_xfer/buf_size) - *pio_mpi_nprocs_g)/snbytes)*(buf_size*snbytes) - +((nbytes_xfer/buf_size)*pio_mpi_nprocs_g)%snbytes); + file_offset=posix_file_offset+(off_t)(((((size_t)nbytes_xfer/buf_size) + *(size_t)pio_mpi_nprocs_g)/(size_t)snbytes)*(buf_size*(size_t)snbytes) + +(((size_t)nbytes_xfer/buf_size)*(size_t)pio_mpi_nprocs_g)%(size_t)snbytes); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = blk_size; @@ -1070,16 +1061,16 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, *snbytes/blk_size*(blk_size*blk_size))+((nbytes_xfer/(buf_size/blk_size)) *pio_mpi_nprocs_g)%(snbytes/blk_size*(blk_size*blk_size))); */ - file_offset=posix_file_offset+(off_t)(((nbytes_xfer/(buf_size/blk_size) - *pio_mpi_nprocs_g)/(snbytes*blk_size))*(buf_size*snbytes)+((nbytes_xfer/(buf_size/blk_size)) - *pio_mpi_nprocs_g)%(snbytes*blk_size)); + file_offset=posix_file_offset+(off_t)((((size_t)nbytes_xfer/(buf_size/blk_size) + *(size_t)pio_mpi_nprocs_g)/((size_t)snbytes*blk_size))*(buf_size*(size_t)snbytes)+(((size_t)nbytes_xfer/(buf_size/blk_size)) + *(size_t)pio_mpi_nprocs_g)%((size_t)snbytes*blk_size)); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = blk_size * blk_size; /* Global offset advance after each I/O operation */ /* file_offset_advance = (off_t)(snbytes/blk_size*(blk_size*blk_size)); */ - file_offset_advance = (off_t)(snbytes*blk_size); + file_offset_advance = (off_t)snbytes*(off_t)blk_size; } /* end else */ } /* end else */ @@ -1106,7 +1097,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, buf_p+=nbytes_xfer_advance; /* Advance global offset in dataset */ - nbytes_xfer+=nbytes_xfer_advance; + nbytes_xfer+=(ssize_t)nbytes_xfer_advance; /* Decrement number of bytes left this time */ nbytes_toxfer-=nbytes_xfer_advance; @@ -1137,7 +1128,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_WRITE"); /* Advance global offset in dataset */ - nbytes_xfer+=buf_size; + nbytes_xfer+=(ssize_t)buf_size; } /* end if */ /* Interleaved access pattern */ else { @@ -1162,7 +1153,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, buf_p+=blk_size; /* Advance global offset in dataset */ - nbytes_xfer+=blk_size; + nbytes_xfer+=(ssize_t)blk_size; /* Decrement number of bytes left this time */ nbytes_toxfer-=blk_size; @@ -1183,7 +1174,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_WRITE"); /* Advance global offset in dataset */ - nbytes_xfer+=buf_size; + nbytes_xfer+=(ssize_t)buf_size; } /* end if */ /* Interleaved access pattern */ else { @@ -1202,7 +1193,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_WRITE"); /* Advance global offset in dataset */ - nbytes_xfer+=buf_size; + nbytes_xfer+=(ssize_t)buf_size; } /* end else */ } /* end else */ } /* end if */ @@ -1213,8 +1204,8 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, /* Contiguous access pattern */ if (!parms->interleaved) { /* Compute offset in file */ - mpi_offset=mpi_file_offset+((nbytes_xfer/blk_size)/snbytes)* - (blk_size*snbytes)+((nbytes_xfer/blk_size)%snbytes); + mpi_offset=mpi_file_offset+(MPI_Offset)((((size_t)nbytes_xfer/blk_size)/(size_t)snbytes)* + (blk_size*(size_t)snbytes))+(MPI_Offset)(((size_t)nbytes_xfer/blk_size)%(size_t)snbytes); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = buf_size; @@ -1228,8 +1219,8 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, /* Interleaved access pattern */ else { /* Compute offset in file */ - mpi_offset=mpi_file_offset+(((nbytes_xfer/buf_size)*pio_mpi_nprocs_g)/snbytes)* - (buf_size*snbytes)+((nbytes_xfer/buf_size)*pio_mpi_nprocs_g)%snbytes; + mpi_offset=mpi_file_offset+(MPI_Offset)(((((size_t)nbytes_xfer/buf_size)*(size_t)pio_mpi_nprocs_g)/(size_t)snbytes)* + (buf_size*(size_t)snbytes))+(MPI_Offset)((((size_t)nbytes_xfer/buf_size)*(size_t)pio_mpi_nprocs_g)%(size_t)snbytes); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = blk_size; @@ -1266,16 +1257,16 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, (buf_size/blk_size*snbytes/blk_size*(blk_size*blk_size))+ ((nbytes_xfer/(buf_size/blk_size))*pio_mpi_nprocs_g)%(snbytes /blk_size*(blk_size*blk_size)); */ - mpi_offset=mpi_file_offset+((nbytes_xfer/(buf_size/blk_size) - *pio_mpi_nprocs_g)/(snbytes*blk_size))*(buf_size*snbytes) - +((nbytes_xfer/(buf_size/blk_size))*pio_mpi_nprocs_g)%(snbytes*blk_size); + mpi_offset=mpi_file_offset+(MPI_Offset)((((size_t)nbytes_xfer/(buf_size/blk_size) + *(size_t)pio_mpi_nprocs_g)/((size_t)snbytes*blk_size))*(buf_size*(size_t)snbytes)) + +(MPI_Offset)((((size_t)nbytes_xfer/(buf_size/blk_size))*(size_t)pio_mpi_nprocs_g)%((size_t)snbytes*blk_size)); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = blk_size * blk_size; /* Global offset advance after each I/O operation */ /* mpi_offset_advance = (MPI_Offset)(snbytes/blk_size*(blk_size*blk_size)); */ - mpi_offset_advance = (MPI_Offset)(snbytes*blk_size); + mpi_offset_advance = (MPI_Offset)((size_t)snbytes*blk_size); /* MPI type to be used for collective access */ mpi_collective_type = mpi_chunk_inter_type; @@ -1301,7 +1292,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, buf_p+=nbytes_xfer_advance; /* Advance global offset in dataset */ - nbytes_xfer+=nbytes_xfer_advance; + nbytes_xfer+=(ssize_t)nbytes_xfer_advance; /* Decrement number of bytes left this time */ nbytes_toxfer-=nbytes_xfer_advance; @@ -1324,7 +1315,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_WRITE"); /* Advance global offset in dataset */ - nbytes_xfer+=buf_size*blk_size; + nbytes_xfer+=(off_t)buf_size*(off_t)blk_size; } /* end else */ } /* end else */ @@ -1353,22 +1344,22 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((hrc >= 0), "H5Dwrite"); /* Increment number of bytes transferred */ - nbytes_xfer += buf_size; + nbytes_xfer += (ssize_t)buf_size; } /* end if */ /* 2D dataspace */ else { /* Set up the file dset space id to move the selection to process */ if (!parms->interleaved){ /* Contiguous pattern */ - h5offset[0] = (nbytes_xfer/(snbytes*blk_size))*blk_size; - h5offset[1] = (nbytes_xfer%(snbytes*blk_size))/blk_size; + h5offset[0] = (hssize_t)(((size_t)nbytes_xfer/((size_t)snbytes*blk_size))*blk_size); + h5offset[1] = (hssize_t)(((size_t)nbytes_xfer%((size_t)snbytes*blk_size))/blk_size); } /* end if */ else { /* Interleaved access pattern */ /* Skip offset over blocks of other processes */ - h5offset[0] = ((nbytes_xfer*pio_mpi_nprocs_g)/(snbytes*buf_size))*buf_size; - h5offset[1] = ((nbytes_xfer*pio_mpi_nprocs_g)%(snbytes*buf_size))/buf_size; + h5offset[0] = (hssize_t)((((size_t)nbytes_xfer*(size_t)pio_mpi_nprocs_g)/((size_t)snbytes*buf_size))*buf_size); + h5offset[1] = (hssize_t)((((size_t)nbytes_xfer*(size_t)pio_mpi_nprocs_g)%((size_t)snbytes*buf_size))/buf_size); } /* end else */ hrc = H5Soffset_simple(h5dset_space_id, h5offset); @@ -1380,7 +1371,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((hrc >= 0), "H5Dwrite"); /* Increment number of bytes transferred */ - nbytes_xfer += buf_size*blk_size; + nbytes_xfer += (off_t)buf_size*(off_t)blk_size; } /* end else */ @@ -1402,7 +1393,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, GOTOERROR(FAIL); } - h5ds_id = -1; + h5ds_id = H5I_INVALID_HID; } /* end if */ } /* end for */ @@ -1458,7 +1449,7 @@ done: HDfprintf(stderr, "HDF5 Dataset Space Close failed\n"); ret_code = FAIL; } else { - h5dset_space_id = -1; + h5dset_space_id = H5I_INVALID_HID; } } @@ -1468,7 +1459,7 @@ done: HDfprintf(stderr, "HDF5 Memory Space Close failed\n"); ret_code = FAIL; } else { - h5mem_space_id = -1; + h5mem_space_id = H5I_INVALID_HID; } } @@ -1478,7 +1469,7 @@ done: HDfprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); ret_code = FAIL; } else { - h5dxpl = -1; + h5dxpl = H5I_INVALID_HID; } } @@ -1537,15 +1528,15 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, /* HDF5 variables */ herr_t hrc; /*HDF5 return code */ hsize_t h5dims[2]; /*dataset dim sizes */ - hid_t h5dset_space_id = -1; /*dataset space ID */ - hid_t h5mem_space_id = -1; /*memory dataspace ID */ - hid_t h5ds_id = -1; /*dataset handle */ + hid_t h5dset_space_id = H5I_INVALID_HID; /*dataset space ID */ + hid_t h5mem_space_id = H5I_INVALID_HID; /*memory dataspace ID */ + hid_t h5ds_id = H5I_INVALID_HID; /*dataset handle */ hsize_t h5block[2]; /*dataspace selection */ hsize_t h5stride[2]; hsize_t h5count[2]; hsize_t h5start[2]; hssize_t h5offset[2]; /* Selection offset within dataspace */ - hid_t h5dxpl = -1; /* Dataset transfer property list */ + hid_t h5dxpl = H5I_INVALID_HID; /* Dataset transfer property list */ /* Get the parameters from the parameter block */ blk_size=parms->blk_size; @@ -1569,7 +1560,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, } /* end if */ /* Interleaved Pattern: */ else { - bytes_begin[0] = (off_t)(blk_size*pio_mpi_rank_g); + bytes_begin[0] = (off_t)blk_size*(off_t)pio_mpi_rank_g; } /* end else */ }/* end if */ /* 2D dataspace */ @@ -1591,9 +1582,9 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, bytes_begin[0] = 0; if (!parms->h5_use_chunks || parms->io_type==PHDF5) - bytes_begin[1] = (off_t)(blk_size*pio_mpi_rank_g); + bytes_begin[1] = (off_t)blk_size*(off_t)pio_mpi_rank_g; else - bytes_begin[1] = (off_t)(blk_size*blk_size*pio_mpi_rank_g); + bytes_begin[1] = (off_t)blk_size*(off_t)blk_size*(off_t)pio_mpi_rank_g; } /* end else */ } /* end else */ @@ -1665,7 +1656,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_COMMIT"); /* Build contiguous file's derived type */ - mrc = MPI_Type_vector((int)blk_size, (int)1, (int)(snbytes/buf_size), + mrc = MPI_Type_vector((int)blk_size, (int)1, (int)((size_t)snbytes/buf_size), mpi_partial_buffer_cont, &mpi_cont_type); VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_CREATE"); @@ -1683,7 +1674,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_COMMIT"); /* Build interleaved file's derived type */ - mrc = MPI_Type_vector((int)buf_size, (int)1, (int)(snbytes/blk_size), + mrc = MPI_Type_vector((int)buf_size, (int)1, (int)((size_t)snbytes/blk_size), mpi_partial_buffer_inter, &mpi_inter_type); VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_CREATE"); @@ -1710,7 +1701,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_COMMIT"); /* Build chunk interleaved file's derived type */ - mrc = MPI_Type_vector((int)(buf_size/blk_size), (int)1, (int)(snbytes/blk_size), + mrc = MPI_Type_vector((int)(buf_size/blk_size), (int)1, (int)((size_t)snbytes/blk_size), mpi_full_chunk, &mpi_chunk_inter_type); VRFY((mrc==MPI_SUCCESS), "MPIO_TYPE_CREATE"); @@ -1725,22 +1716,22 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, if (!parms->dim2d){ if(nbytes>0) { /* define a contiguous dataset of nbytes native bytes */ - h5dims[0] = nbytes; + h5dims[0] = (hsize_t)nbytes; h5dset_space_id = H5Screate_simple(1, h5dims, NULL); VRFY((h5dset_space_id >= 0), "H5Screate_simple"); /* Set up the file dset space id to select the pattern to access */ if (!parms->interleaved){ /* Contiguous pattern */ - h5start[0] = bytes_begin[0]; + h5start[0] = (hsize_t)bytes_begin[0]; h5stride[0] = h5block[0] = blk_size; h5count[0] = buf_size/blk_size; } /* end if */ else { /* Interleaved access pattern */ /* Skip offset over blocks of other processes */ - h5start[0] = bytes_begin[0]; - h5stride[0] = blk_size*pio_mpi_nprocs_g; + h5start[0] = (hsize_t)bytes_begin[0]; + h5stride[0] = blk_size*(size_t)pio_mpi_nprocs_g; h5block[0] = blk_size; h5count[0] = buf_size/blk_size; } /* end else */ @@ -1768,16 +1759,16 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, else { if(nbytes>0) { /* define a contiguous dataset of nbytes native bytes */ - h5dims[0] = snbytes; - h5dims[1] = snbytes; + h5dims[0] = (hsize_t)snbytes; + h5dims[1] = (hsize_t)snbytes; h5dset_space_id = H5Screate_simple(2, h5dims, NULL); VRFY((h5dset_space_id >= 0), "H5Screate_simple"); /* Set up the file dset space id to select the pattern to access */ if (!parms->interleaved){ /* Contiguous pattern */ - h5start[0] = bytes_begin[0]; - h5start[1] = bytes_begin[1]; + h5start[0] = (hsize_t)bytes_begin[0]; + h5start[1] = (hsize_t)bytes_begin[1]; h5stride[0] = 1; h5stride[1] = h5block[0] = h5block[1] = blk_size; h5count[0] = 1; @@ -1786,10 +1777,10 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, else { /* Interleaved access pattern */ /* Skip offset over blocks of other processes */ - h5start[0] = bytes_begin[0]; - h5start[1] = bytes_begin[1]; + h5start[0] = (hsize_t)bytes_begin[0]; + h5start[1] = (hsize_t)bytes_begin[1]; h5stride[0] = blk_size; - h5stride[1] = blk_size*pio_mpi_nprocs_g; + h5stride[1] = blk_size*(size_t)pio_mpi_nprocs_g; h5block[0] = h5block[1] = blk_size; h5count[0] = buf_size/blk_size; h5count[1] = 1; @@ -1913,7 +1904,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((rc != 0), "POSIXREAD"); /* Advance global offset in dataset */ - nbytes_xfer+=buf_size; + nbytes_xfer+=(off_t)buf_size; } /* end if */ /* Interleaved access pattern */ else { @@ -1942,7 +1933,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, buf_p+=blk_size; /* Advance global offset in dataset */ - nbytes_xfer+=blk_size; + nbytes_xfer+=(off_t)blk_size; /* Decrement number of bytes left this time */ nbytes_toxfer-=blk_size; @@ -1956,8 +1947,8 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, /* Contiguous access pattern */ if (!parms->interleaved) { /* Compute file offset */ - file_offset=posix_file_offset+(off_t)(((nbytes_xfer/blk_size) - /snbytes)*(blk_size*snbytes)+((nbytes_xfer/blk_size)%snbytes)); + file_offset=posix_file_offset+(off_t)((((size_t)nbytes_xfer/blk_size) + /(size_t)snbytes)*(blk_size*(size_t)snbytes)+(((size_t)nbytes_xfer/blk_size)%(size_t)snbytes)); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = buf_size; @@ -1968,9 +1959,9 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, /* Interleaved access pattern */ else { /* Compute file offset */ - file_offset=posix_file_offset+(off_t)((((nbytes_xfer/buf_size) - *pio_mpi_nprocs_g)/snbytes)*(buf_size*snbytes) - +((nbytes_xfer/buf_size)*pio_mpi_nprocs_g)%snbytes); + file_offset=posix_file_offset+(off_t)(((((size_t)nbytes_xfer/buf_size) + *(size_t)pio_mpi_nprocs_g)/(size_t)snbytes)*(buf_size*(size_t)snbytes) + +(((size_t)nbytes_xfer/buf_size)*(size_t)pio_mpi_nprocs_g)%(size_t)snbytes); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = blk_size; @@ -2001,16 +1992,16 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, *snbytes/blk_size*(blk_size*blk_size))+((nbytes_xfer/(buf_size/blk_size)) *pio_mpi_nprocs_g)%(snbytes/blk_size*(blk_size*blk_size))); */ - file_offset=posix_file_offset+(off_t)(((nbytes_xfer/(buf_size/blk_size) - *pio_mpi_nprocs_g)/(snbytes*blk_size))*(buf_size*snbytes)+((nbytes_xfer/(buf_size/blk_size)) - *pio_mpi_nprocs_g)%(snbytes*blk_size)); + file_offset=posix_file_offset+(off_t)((((size_t)nbytes_xfer/(buf_size/blk_size) + *(size_t)pio_mpi_nprocs_g)/((size_t)snbytes*blk_size))*(buf_size*(size_t)snbytes)+(((size_t)nbytes_xfer/(buf_size/blk_size)) + *(size_t)pio_mpi_nprocs_g)%((size_t)snbytes*blk_size)); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = blk_size * blk_size; /* Global offset advance after each I/O operation */ /* file_offset_advance = (off_t)(snbytes/blk_size*(blk_size*blk_size)); */ - file_offset_advance = (off_t)(snbytes*blk_size); + file_offset_advance = (off_t)((size_t)snbytes*blk_size); } /* end else */ } /* end else */ @@ -2037,7 +2028,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, buf_p+=nbytes_xfer_advance; /* Advance global offset in dataset */ - nbytes_xfer+=nbytes_xfer_advance; + nbytes_xfer+=(off_t)nbytes_xfer_advance; /* Decrement number of bytes left this time */ nbytes_toxfer-=nbytes_xfer_advance; @@ -2067,7 +2058,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_READ"); /* Advance global offset in dataset */ - nbytes_xfer+=buf_size; + nbytes_xfer+=(off_t)buf_size; } /* end if */ /* Interleaved access pattern */ else { @@ -2092,7 +2083,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, buf_p+=blk_size; /* Advance global offset in dataset */ - nbytes_xfer+=blk_size; + nbytes_xfer+=(off_t)blk_size; /* Decrement number of bytes left this time */ nbytes_toxfer-=blk_size; @@ -2113,7 +2104,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_READ"); /* Advance global offset in dataset */ - nbytes_xfer+=buf_size; + nbytes_xfer+=(off_t)buf_size; } /* end if */ /* Interleaved access pattern */ else { @@ -2132,7 +2123,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_READ"); /* Advance global offset in dataset */ - nbytes_xfer+=buf_size; + nbytes_xfer+=(off_t)buf_size; } /* end else */ } /* end else */ } /* end if */ @@ -2143,8 +2134,8 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, /* Contiguous access pattern */ if (!parms->interleaved) { /* Compute offset in file */ - mpi_offset=mpi_file_offset+((nbytes_xfer/blk_size)/snbytes)* - (blk_size*snbytes)+((nbytes_xfer/blk_size)%snbytes); + mpi_offset=mpi_file_offset+(MPI_Offset)((((size_t)nbytes_xfer/blk_size)/(size_t)snbytes)* + (blk_size*(size_t)snbytes))+(MPI_Offset)(((size_t)nbytes_xfer/blk_size)%(size_t)snbytes); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = buf_size; @@ -2158,8 +2149,8 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, /* Interleaved access pattern */ else { /* Compute offset in file */ - mpi_offset=mpi_file_offset+(((nbytes_xfer/buf_size)*pio_mpi_nprocs_g)/snbytes)* - (buf_size*snbytes)+((nbytes_xfer/buf_size)*pio_mpi_nprocs_g)%snbytes; + mpi_offset=mpi_file_offset+(MPI_Offset)(((((size_t)nbytes_xfer/buf_size)*(size_t)pio_mpi_nprocs_g)/(size_t)snbytes)* + (buf_size*(size_t)snbytes))+(MPI_Offset)((((size_t)nbytes_xfer/buf_size)*(size_t)pio_mpi_nprocs_g)%(size_t)snbytes); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = blk_size; @@ -2196,16 +2187,16 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, (buf_size/blk_size*snbytes/blk_size*(blk_size*blk_size))+ ((nbytes_xfer/(buf_size/blk_size))*pio_mpi_nprocs_g)%(snbytes /blk_size*(blk_size*blk_size)); */ - mpi_offset=mpi_file_offset+((nbytes_xfer/(buf_size/blk_size) - *pio_mpi_nprocs_g)/(snbytes*blk_size))*(buf_size*snbytes) - +((nbytes_xfer/(buf_size/blk_size))*pio_mpi_nprocs_g)%(snbytes*blk_size); + mpi_offset=mpi_file_offset+(MPI_Offset)((((size_t)nbytes_xfer/(buf_size/blk_size) + *(size_t)pio_mpi_nprocs_g)/((size_t)snbytes*blk_size))*(buf_size*(size_t)snbytes)) + +(MPI_Offset)((((size_t)nbytes_xfer/(buf_size/blk_size))*(size_t)pio_mpi_nprocs_g)%((size_t)snbytes*blk_size)); /* Number of bytes to be transferred per I/O operation */ nbytes_xfer_advance = blk_size * blk_size; /* Global offset advance after each I/O operation */ /* mpi_offset_advance = (MPI_Offset)(snbytes/blk_size*(blk_size*blk_size)); */ - mpi_offset_advance = (MPI_Offset)(snbytes*blk_size); + mpi_offset_advance = (MPI_Offset)((size_t)snbytes*blk_size); /* MPI type to be used for collective access */ mpi_collective_type = mpi_chunk_inter_type; @@ -2231,7 +2222,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, buf_p+=nbytes_xfer_advance; /* Advance global offset in dataset */ - nbytes_xfer+=nbytes_xfer_advance; + nbytes_xfer+=(off_t)nbytes_xfer_advance; /* Decrement number of bytes left this time */ nbytes_toxfer-=nbytes_xfer_advance; @@ -2254,7 +2245,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((mrc==MPI_SUCCESS), "MPIO_READ"); /* Advance global offset in dataset */ - nbytes_xfer+=buf_size*blk_size; + nbytes_xfer+=(off_t)buf_size*(off_t)blk_size; } /* end else */ } /* end else */ @@ -2282,21 +2273,21 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((hrc >= 0), "H5Dread"); /* Increment number of bytes transferred */ - nbytes_xfer += buf_size; + nbytes_xfer += (off_t)buf_size; } /* end if */ /* 2D dataspace */ else { /* Set up the file dset space id to move the selection to process */ if (!parms->interleaved){ /* Contiguous pattern */ - h5offset[0] = (nbytes_xfer/(snbytes*blk_size))*blk_size; - h5offset[1] = (nbytes_xfer%(snbytes*blk_size))/blk_size; + h5offset[0] = (hssize_t)(((size_t)nbytes_xfer/((size_t)snbytes*blk_size))*blk_size); + h5offset[1] = (hssize_t)(((size_t)nbytes_xfer%((size_t)snbytes*blk_size))/blk_size); } /* end if */ else { /* Interleaved access pattern */ /* Skip offset over blocks of other processes */ - h5offset[0] = ((nbytes_xfer*pio_mpi_nprocs_g)/(snbytes*buf_size))*buf_size; - h5offset[1] = ((nbytes_xfer*pio_mpi_nprocs_g)%(snbytes*buf_size))/buf_size; + h5offset[0] = (hssize_t)((((size_t)nbytes_xfer*(size_t)pio_mpi_nprocs_g)/((size_t)snbytes*buf_size))*buf_size); + h5offset[1] = (hssize_t)((((size_t)nbytes_xfer*(size_t)pio_mpi_nprocs_g)%((size_t)snbytes*buf_size))/buf_size); } /* end else */ hrc = H5Soffset_simple(h5dset_space_id, h5offset); @@ -2308,7 +2299,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, VRFY((hrc >= 0), "H5Dread"); /* Increment number of bytes transferred */ - nbytes_xfer += buf_size*blk_size; + nbytes_xfer += (off_t)buf_size*(off_t)blk_size; } /* end else */ break; @@ -2357,7 +2348,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, GOTOERROR(FAIL); } - h5ds_id = -1; + h5ds_id = H5I_INVALID_HID; } /* end if */ } /* end for */ @@ -2413,7 +2404,7 @@ done: HDfprintf(stderr, "HDF5 Dataset Space Close failed\n"); ret_code = FAIL; } else { - h5dset_space_id = -1; + h5dset_space_id = H5I_INVALID_HID; } } @@ -2423,7 +2414,7 @@ done: HDfprintf(stderr, "HDF5 Memory Space Close failed\n"); ret_code = FAIL; } else { - h5mem_space_id = -1; + h5mem_space_id = H5I_INVALID_HID; } } @@ -2433,7 +2424,7 @@ done: HDfprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); ret_code = FAIL; } else { - h5dxpl = -1; + h5dxpl = H5I_INVALID_HID; } } @@ -2451,7 +2442,7 @@ done: do_fopen(parameters *param, char *fname, file_descr *fd /*out*/, int flags) { int ret_code = SUCCESS, mrc; - hid_t acc_tpl = -1; /* file access templates */ + hid_t acc_tpl = H5I_INVALID_HID; /* file access templates */ switch (param->io_type) { case POSIXIO: diff --git a/tools/test/perform/pio_perf.c b/tools/test/perform/pio_perf.c index 5977731..4c0ec5e 100644 --- a/tools/test/perform/pio_perf.c +++ b/tools/test/perform/pio_perf.c @@ -80,8 +80,12 @@ #define PIO_MPI 0x2 #define PIO_HDF5 0x4 +#define DBL_EPSILON 2.2204460492503131e-16 +#define H5_DBL_ABS_EQUAL(X,Y) (fabs((X)-(Y)) < DBL_EPSILON) + /* report 0.0 in case t is zero too */ #define MB_PER_SEC(bytes,t) (((t)==0.0) ? 0.0 : ((((double)bytes) / ONE_MB) / (t))) +#define MB_PER_SEC(bytes,t) (H5_DBL_ABS_EQUAL((t), 0.0) ? 0.0 : ((((double)bytes) / ONE_MB) / (t))) #ifndef TRUE #define TRUE 1 @@ -311,6 +315,7 @@ static void output_report(const char *fmt, ...); static void print_indent(register int indent); static void usage(const char *prog); static void report_parameters(struct options *opts); +static off_t squareo(off_t); /* * Function: main @@ -393,6 +398,12 @@ finish: return exit_value; } +off_t +squareo(off_t x) +{ + return x * x; +} + /* * Function: run_test_loop * Purpose: Run the I/O tests. Write the results to OUTPUT. @@ -428,8 +439,8 @@ run_test_loop(struct options *opts) parms.interleaved = opts->interleaved; parms.collective = opts->collective; parms.dim2d = opts->dim2d; - parms.h5_align = opts->h5_alignment; - parms.h5_thresh = opts->h5_threshold; + parms.h5_align = (hsize_t)opts->h5_alignment; + parms.h5_thresh = (hsize_t)opts->h5_threshold; parms.h5_use_chunks = opts->h5_use_chunks; parms.h5_write_only = opts->h5_write_only; parms.verify = opts->verify; @@ -456,7 +467,7 @@ run_test_loop(struct options *opts) parms.buf_size = buf_size; if (parms.dim2d){ - parms.num_bytes = (off_t)pow((double)(opts->num_bpp*parms.num_procs),2); + parms.num_bytes = squareo(opts->num_bpp * parms.num_procs); if (parms.interleaved) output_report("Transfer Buffer Size: %ldx%ld bytes, File size: %.2f MB\n", buf_size, opts->blk_size, @@ -879,7 +890,7 @@ accumulate_minmax_stuff(minmax *mm, int count) int i; minmax total_mm; - total_mm.sum = 0.0; + total_mm.sum = 0.0f; total_mm.max = -DBL_MAX; total_mm.min = DBL_MAX; total_mm.num = count; @@ -1155,10 +1166,10 @@ report_parameters(struct options *opts) recover_size_and_print((long long)(opts->num_bpp * opts->max_num_procs), "\n"); HDfprintf(output, "rank %d: File size=", rank); - recover_size_and_print((long long)(pow((double)(opts->num_bpp * opts->min_num_procs),2) - * opts->num_dsets), ":"); - recover_size_and_print((long long)(pow((double)(opts->num_bpp * opts->max_num_procs),2) - * opts->num_dsets), "\n"); + recover_size_and_print((long long)(squareo(opts->num_bpp * opts->min_num_procs) + * opts->num_dsets), ":"); + recover_size_and_print((long long)(squareo(opts->num_bpp * opts->max_num_procs) + * opts->num_dsets), "\n"); HDfprintf(output, "rank %d: Transfer buffer size=", rank); if(opts->interleaved){ @@ -1322,7 +1333,7 @@ parse_command_line(int argc, char *argv[]) break; #endif /* 0 */ case 'B': - cl_opts->blk_size = parse_size_directive(opt_arg); + cl_opts->blk_size = (size_t)parse_size_directive(opt_arg); break; case 'c': /* Turn on chunked HDF5 dataset creation */ @@ -1423,10 +1434,10 @@ parse_command_line(int argc, char *argv[]) cl_opts->h5_write_only = TRUE; break; case 'x': - cl_opts->min_xfer_size = parse_size_directive(opt_arg); + cl_opts->min_xfer_size = (size_t)parse_size_directive(opt_arg); break; case 'X': - cl_opts->max_xfer_size = parse_size_directive(opt_arg); + cl_opts->max_xfer_size = (size_t)parse_size_directive(opt_arg); break; case 'h': case '?': @@ -1446,13 +1457,13 @@ parse_command_line(int argc, char *argv[]) } if (cl_opts->max_xfer_size == 0) - cl_opts->max_xfer_size = cl_opts->num_bpp; + cl_opts->max_xfer_size = (size_t)cl_opts->num_bpp; if (cl_opts->min_xfer_size == 0) - cl_opts->min_xfer_size = (cl_opts->num_bpp)/2; + cl_opts->min_xfer_size = (size_t)(cl_opts->num_bpp)/2; if (cl_opts->blk_size == 0) - cl_opts->blk_size = (cl_opts->num_bpp)/2; + cl_opts->blk_size = (size_t)(cl_opts->num_bpp)/2; /* set default if none specified yet */ @@ -1462,15 +1473,15 @@ parse_command_line(int argc, char *argv[]) /* verify parameters sanity. Adjust if needed. */ /* cap xfer_size with bytes per process */ if (!cl_opts->dim2d) { - if (cl_opts->min_xfer_size > cl_opts->num_bpp) - cl_opts->min_xfer_size = cl_opts->num_bpp; - if (cl_opts->max_xfer_size > cl_opts->num_bpp) - cl_opts->max_xfer_size = cl_opts->num_bpp; + if (cl_opts->min_xfer_size > (size_t)cl_opts->num_bpp) + cl_opts->min_xfer_size = (size_t)cl_opts->num_bpp; + if (cl_opts->max_xfer_size > (size_t)cl_opts->num_bpp) + cl_opts->max_xfer_size = (size_t)cl_opts->num_bpp; } if (cl_opts->min_xfer_size > cl_opts->max_xfer_size) cl_opts->min_xfer_size = cl_opts->max_xfer_size; - if (cl_opts->blk_size > cl_opts->num_bpp ) - cl_opts->blk_size = cl_opts->num_bpp; + if (cl_opts->blk_size > (size_t)cl_opts->num_bpp ) + cl_opts->blk_size = (size_t)cl_opts->num_bpp; /* check range of number of processes */ if (cl_opts->min_num_procs <= 0) cl_opts->min_num_procs = 1; diff --git a/tools/test/perform/pio_perf.h b/tools/test/perform/pio_perf.h index 7605f20..55d721e 100644 --- a/tools/test/perform/pio_perf.h +++ b/tools/test/perform/pio_perf.h @@ -13,12 +13,13 @@ #ifndef PIO_PERF_H__ #define PIO_PERF_H__ -#include "io_timer.h" #ifndef STANDALONE +#include "io_timer.h" #include "h5test.h" #include "h5tools.h" #include "h5tools_utils.h" #else +#include "io_timer.h" #include "pio_standalone.h" #endif diff --git a/tools/test/perform/pio_standalone.c b/tools/test/perform/pio_standalone.c index 0fba904..8cdca85 100644 --- a/tools/test/perform/pio_standalone.c +++ b/tools/test/perform/pio_standalone.c @@ -164,3 +164,135 @@ print_version(const char *progname) progname, H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE, H5_VERS_SUBRELEASE[0] ? "-" : "", H5_VERS_SUBRELEASE); } + +#ifdef STANDALONE +/* + * Function: h5_set_info_object + * Purpose: Process environment variables setting to set up MPI Info + * object. + * Return: 0 if all is fine; otherwise non-zero. + * Programmer: Albert Cheng, 2002/05/21. + * Modifications: + * Bill Wendling, 2002/05/31 + * Modified so that the HDF5_MPI_INFO environment variable can + * be a semicolon separated list of "key=value" pairings. Most + * of the code is to remove any whitespaces which might be + * surrounding the "key=value" pairs. + */ +int +h5_set_info_object(void) +{ + char *envp; /* environment pointer */ + int ret_value=0; + + /* handle any MPI INFO hints via $HDF5_MPI_INFO */ + if ((envp = HDgetenv("HDF5_MPI_INFO")) != NULL){ + char *next, *valp; + + valp = envp = next = HDstrdup(envp); + + if (!valp) return 0; + + /* create an INFO object if not created yet */ + if (h5_io_info_g == MPI_INFO_NULL) + MPI_Info_create(&h5_io_info_g); + + do { + size_t len; + char *key_val, *endp, *namep; + + if (*valp == ';') + valp++; + + /* copy key/value pair into temporary buffer */ + len = strcspn(valp, ";"); + next = &valp[len]; + key_val = (char *)HDcalloc(1, len + 1); + + /* increment the next pointer past the terminating semicolon */ + if (*next == ';') + ++next; + + namep = HDstrncpy(key_val, valp, len); + + /* pass up any beginning whitespaces */ + while (*namep && (*namep == ' ' || *namep == '\t')) + namep++; + + if (!*namep) continue; /* was all white space, so move to next k/v pair */ + + /* eat up any ending white spaces */ + endp = &namep[HDstrlen(namep) - 1]; + + while (endp && (*endp == ' ' || *endp == '\t')) + *endp-- = '\0'; + + /* find the '=' */ + valp = HDstrchr(namep, '='); + + if (valp != NULL) { /* it's a valid key/value pairing */ + char *tmp_val = valp + 1; + + /* change '=' to \0, move valp down one */ + *valp-- = '\0'; + + /* eat up ending whitespace on the "key" part */ + while (*valp == ' ' || *valp == '\t') + *valp-- = '\0'; + + valp = tmp_val; + + /* eat up beginning whitespace on the "value" part */ + while (*valp == ' ' || *valp == '\t') + *valp++ = '\0'; + + /* actually set the darned thing */ + if (MPI_SUCCESS != MPI_Info_set(h5_io_info_g, namep, valp)) { + HDprintf("MPI_Info_set failed\n"); + ret_value = -1; + } + } + + valp = next; + HDfree(key_val); + } while (next && *next); + + HDfree(envp); + } + + return ret_value; +} + + +/* + * Function: h5_dump_info_object + * Purpose: Display content of an MPI Info object + * Return: void + * Programmer: Albert Cheng 2002/05/21 + * Modifications: + */ +void +h5_dump_info_object(MPI_Info info) +{ + char key[MPI_MAX_INFO_KEY+1]; + char value[MPI_MAX_INFO_VAL+1]; + int flag; + int i, nkeys; + + HDprintf("Dumping MPI Info Object (up to %d bytes per item):\n", MPI_MAX_INFO_VAL); + if (info==MPI_INFO_NULL){ + HDprintf("object is MPI_INFO_NULL\n"); + } + else { + MPI_Info_get_nkeys(info, &nkeys); + HDprintf("object has %d items\n", nkeys); + for (i=0; i<nkeys; i++){ + MPI_Info_get_nthkey(info, i, key); + MPI_Info_get(info, key, MPI_MAX_INFO_VAL, value, &flag); + HDprintf("%s=%s\n", key, value); + } + + } +} +#endif /* STANDALONE */ + diff --git a/tools/test/perform/pio_standalone.h b/tools/test/perform/pio_standalone.h index e6db2e8..cf6d980 100644 --- a/tools/test/perform/pio_standalone.h +++ b/tools/test/perform/pio_standalone.h @@ -483,8 +483,8 @@ extern MPI_Info h5_io_info_g; /* MPI INFO object for IO */ #endif #ifdef H5_HAVE_PARALLEL -H5TEST_DLL int h5_set_info_object(void); -H5TEST_DLL void h5_dump_info_object(MPI_Info info); +int h5_set_info_object(void); +void h5_dump_info_object(MPI_Info info); #endif diff --git a/tools/test/perform/sio_engine.c b/tools/test/perform/sio_engine.c index 4dc4d0b..69409bb 100644 --- a/tools/test/perform/sio_engine.c +++ b/tools/test/perform/sio_engine.c @@ -114,11 +114,11 @@ static const char *multi_letters = "msbrglo"; /* string for multi driver */ /* HDF5 global variables */ static hsize_t h5count[MAX_DIMS]; /*selection count */ static hssize_t h5offset[MAX_DIMS]; /* Selection offset within dataspace */ -static hid_t h5dset_space_id = -1; /*dataset space ID */ -static hid_t h5mem_space_id = -1; /*memory dataspace ID */ -static hid_t h5ds_id = -1; /*dataset handle */ -static hid_t h5dcpl = -1; /* Dataset creation property list */ -static hid_t h5dxpl = -1; /* Dataset transfer property list */ +static hid_t h5dset_space_id = H5I_INVALID_HID; /*dataset space ID */ +static hid_t h5mem_space_id = H5I_INVALID_HID; /*memory dataspace ID */ +static hid_t h5ds_id = H5I_INVALID_HID; /*dataset handle */ +static hid_t h5dcpl = H5I_INVALID_HID; /* Dataset creation property list */ +static hid_t h5dxpl = H5I_INVALID_HID; /* Dataset transfer property list */ /* * Function: do_sio @@ -575,7 +575,7 @@ do_write(results *res, file_descr *fd, parameters *parms, void *buffer) GOTOERROR(FAIL); } - h5ds_id = -1; + h5ds_id = H5I_INVALID_HID; } /* end if */ done: @@ -587,7 +587,7 @@ done: HDfprintf(stderr, "HDF5 Dataset Space Close failed\n"); ret_code = FAIL; } else { - h5dset_space_id = -1; + h5dset_space_id = H5I_INVALID_HID; } } @@ -597,7 +597,7 @@ done: HDfprintf(stderr, "HDF5 Memory Space Close failed\n"); ret_code = FAIL; } else { - h5mem_space_id = -1; + h5mem_space_id = H5I_INVALID_HID; } } @@ -607,7 +607,7 @@ done: HDfprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); ret_code = FAIL; } else { - h5dxpl = -1; + h5dxpl = H5I_INVALID_HID; } } @@ -894,7 +894,7 @@ do_read(results *res, file_descr *fd, parameters *parms, void *buffer) GOTOERROR(FAIL); } - h5ds_id = -1; + h5ds_id = H5I_INVALID_HID; } /* end if */ done: @@ -906,7 +906,7 @@ done: HDfprintf(stderr, "HDF5 Dataset Space Close failed\n"); ret_code = FAIL; } else { - h5dset_space_id = -1; + h5dset_space_id = H5I_INVALID_HID; } } @@ -916,7 +916,7 @@ done: HDfprintf(stderr, "HDF5 Memory Space Close failed\n"); ret_code = FAIL; } else { - h5mem_space_id = -1; + h5mem_space_id = H5I_INVALID_HID; } } @@ -926,7 +926,7 @@ done: HDfprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); ret_code = FAIL; } else { - h5dxpl = -1; + h5dxpl = H5I_INVALID_HID; } } @@ -1137,7 +1137,7 @@ done: hid_t set_vfd(parameters *param) { - hid_t my_fapl = -1; + hid_t my_fapl = H5I_INVALID_HID; vfdtype vfd; vfd = param->vfd; diff --git a/tools/test/perform/sio_perf.h b/tools/test/perform/sio_perf.h index 83caf54..d26c78b 100644 --- a/tools/test/perform/sio_perf.h +++ b/tools/test/perform/sio_perf.h @@ -13,12 +13,13 @@ #ifndef SIO_PERF_H__ #define SIO_PERF_H__ -#include "io_timer.h" #ifndef STANDALONE +#include "io_timer.h" #include "h5test.h" #include "h5tools.h" #include "h5tools_utils.h" #else +#include "io_timer.h" #include "sio_standalone.h" #endif diff --git a/tools/test/perform/sio_standalone.h b/tools/test/perform/sio_standalone.h index 248ef9a..45f6d25 100644 --- a/tools/test/perform/sio_standalone.h +++ b/tools/test/perform/sio_standalone.h @@ -498,8 +498,8 @@ extern MPI_Info h5_io_info_g; /* MPI INFO object for IO */ #endif #ifdef H5_HAVE_PARALLEL -H5TEST_DLL int h5_set_info_object(void); -H5TEST_DLL void h5_dump_info_object(MPI_Info info); +int h5_set_info_object(void); +void h5_dump_info_object(MPI_Info info); #endif @@ -527,4 +527,10 @@ typedef struct long_options { extern int get_option(int argc, const char **argv, const char *opt, const struct long_options *l_opt); + +extern int nCols; /*max number of columns for outputting */ + +/* Definitions of useful routines */ +extern void print_version(const char *progname); + #endif |