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-rw-r--r--MANIFEST6
-rwxr-xr-xconfigure25
-rw-r--r--configure.in1
-rw-r--r--tools/Makefile.am2
-rw-r--r--tools/Makefile.in2
-rw-r--r--tools/h5copy/Makefile.am36
-rw-r--r--tools/h5copy/Makefile.in833
-rw-r--r--tools/h5copy/h5copy.c355
-rw-r--r--tools/h5copy/testh5copy.sh64
9 files changed, 1310 insertions, 14 deletions
diff --git a/MANIFEST b/MANIFEST
index 4eb807c..04ddc58 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -864,6 +864,12 @@
./tools/h5ls/h5ls.c
./tools/h5ls/testh5ls.sh
+./tools/h5copy/testh5copy.sh
+./tools/h5copy/Makefile.in
+./tools/h5copy/h5copy.c
+./tools/h5copy/Makefile.am
+
+
./tools/lib/Makefile.am
./tools/lib/Makefile.in
./tools/lib/h5diff.c
diff --git a/configure b/configure
index 0174f6f..d51e2b1 100755
--- a/configure
+++ b/configure
@@ -1,7 +1,7 @@
#! /bin/sh
-# From configure.in Id: configure.in.
+# From configure.in Id: configure.in 12478 2006-07-17 02:59:54Z epourmal .
# Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.59 for HDF5 1.8.0-alpha4.
+# Generated by GNU Autoconf 2.59 for HDF5 1.8.0-alpha5.
#
# Report bugs to <hdfhelp@ncsa.uiuc.edu>.
#
@@ -424,8 +424,8 @@ SHELL=${CONFIG_SHELL-/bin/sh}
# Identity of this package.
PACKAGE_NAME='HDF5'
PACKAGE_TARNAME='hdf5'
-PACKAGE_VERSION='1.8.0-alpha4'
-PACKAGE_STRING='HDF5 1.8.0-alpha4'
+PACKAGE_VERSION='1.8.0-alpha5'
+PACKAGE_STRING='HDF5 1.8.0-alpha5'
PACKAGE_BUGREPORT='hdfhelp@ncsa.uiuc.edu'
ac_unique_file="src/H5.c"
@@ -964,7 +964,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
-\`configure' configures HDF5 1.8.0-alpha4 to adapt to many kinds of systems.
+\`configure' configures HDF5 1.8.0-alpha5 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@@ -1030,7 +1030,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
- short | recursive ) echo "Configuration of HDF5 1.8.0-alpha4:";;
+ short | recursive ) echo "Configuration of HDF5 1.8.0-alpha5:";;
esac
cat <<\_ACEOF
@@ -1233,7 +1233,7 @@ fi
test -n "$ac_init_help" && exit 0
if $ac_init_version; then
cat <<\_ACEOF
-HDF5 configure 1.8.0-alpha4
+HDF5 configure 1.8.0-alpha5
generated by GNU Autoconf 2.59
Copyright (C) 2003 Free Software Foundation, Inc.
@@ -1247,7 +1247,7 @@ cat >&5 <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
-It was created by HDF5 $as_me 1.8.0-alpha4, which was
+It was created by HDF5 $as_me 1.8.0-alpha5, which was
generated by GNU Autoconf 2.59. Invocation command line was
$ $0 $@
@@ -1895,7 +1895,7 @@ fi
# Define the identity of the package.
PACKAGE='hdf5'
- VERSION='1.8.0-alpha4'
+ VERSION='1.8.0-alpha5'
cat >>confdefs.h <<_ACEOF
@@ -52159,7 +52159,7 @@ if test -n "$TESTPARALLEL"; then
fi
fi
- ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile testpar/Makefile testpar/testph5.sh perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5dump/testh5dumpxml.sh tools/h5import/Makefile tools/h5diff/Makefile tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5repart.sh tools/misc/testh5stat.sh examples/Makefile c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/examples/Makefile fortran/Makefile fortran/src/h5fc fortran/src/libhdf5_fortran.settings fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile hl/Makefile hl/src/Makefile hl/test/Makefile hl/tools/Makefile hl/tools/gif2h5/Makefile hl/examples/Makefile hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile"
+ ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile testpar/Makefile testpar/testph5.sh perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5dump/testh5dumpxml.sh tools/h5import/Makefile tools/h5diff/Makefile tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/h5copy/Makefile tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5repart.sh tools/misc/testh5stat.sh examples/Makefile c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/examples/Makefile fortran/Makefile fortran/src/h5fc fortran/src/libhdf5_fortran.settings fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile hl/Makefile hl/src/Makefile hl/test/Makefile hl/tools/Makefile hl/tools/gif2h5/Makefile hl/examples/Makefile hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile"
cat >confcache <<\_ACEOF
@@ -52608,7 +52608,7 @@ _ASBOX
} >&5
cat >&5 <<_CSEOF
-This file was extended by HDF5 $as_me 1.8.0-alpha4, which was
+This file was extended by HDF5 $as_me 1.8.0-alpha5, which was
generated by GNU Autoconf 2.59. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@@ -52671,7 +52671,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF
ac_cs_version="\\
-HDF5 config.status 1.8.0-alpha4
+HDF5 config.status 1.8.0-alpha5
configured by $0, generated by GNU Autoconf 2.59,
with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
@@ -52800,6 +52800,7 @@ do
"tools/h5repack/Makefile" ) CONFIG_FILES="$CONFIG_FILES tools/h5repack/Makefile" ;;
"tools/h5repack/h5repack.sh" ) CONFIG_FILES="$CONFIG_FILES tools/h5repack/h5repack.sh" ;;
"tools/h5ls/Makefile" ) CONFIG_FILES="$CONFIG_FILES tools/h5ls/Makefile" ;;
+ "tools/h5copy/Makefile" ) CONFIG_FILES="$CONFIG_FILES tools/h5copy/Makefile" ;;
"tools/lib/Makefile" ) CONFIG_FILES="$CONFIG_FILES tools/lib/Makefile" ;;
"tools/misc/Makefile" ) CONFIG_FILES="$CONFIG_FILES tools/misc/Makefile" ;;
"tools/misc/h5cc" ) CONFIG_FILES="$CONFIG_FILES tools/misc/h5cc" ;;
diff --git a/configure.in b/configure.in
index 9be5ca6..0710802 100644
--- a/configure.in
+++ b/configure.in
@@ -3501,6 +3501,7 @@ AC_CONFIG_FILES([src/libhdf5.settings
tools/h5repack/Makefile
tools/h5repack/h5repack.sh
tools/h5ls/Makefile
+ tools/h5copy/Makefile
tools/lib/Makefile
tools/misc/Makefile
tools/misc/h5cc
diff --git a/tools/Makefile.am b/tools/Makefile.am
index ab89309..17e0bd8 100644
--- a/tools/Makefile.am
+++ b/tools/Makefile.am
@@ -21,6 +21,6 @@
include $(top_srcdir)/config/commence.am
# All subdirectories
-SUBDIRS=lib h5dump h5diff h5ls misc h5import h5repack h5jam
+SUBDIRS=lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy
include $(top_srcdir)/config/conclude.am
diff --git a/tools/Makefile.in b/tools/Makefile.in
index 6f8a7dd..94ec5e3 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -306,7 +306,7 @@ TRACE = perl $(top_srcdir)/bin/trace
CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# All subdirectories
-SUBDIRS = lib h5dump h5diff h5ls misc h5import h5repack h5jam
+SUBDIRS = lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy
# Automake needs to be taught how to build lib, progs, and tests targets.
# These will be filled in automatically for the most part (e.g.,
diff --git a/tools/h5copy/Makefile.am b/tools/h5copy/Makefile.am
new file mode 100644
index 0000000..9632c1b
--- /dev/null
+++ b/tools/h5copy/Makefile.am
@@ -0,0 +1,36 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src and tools/lib directories
+INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_SCRIPT=$(srcdir)/testh5copy.sh
+check_SCRIPTS=$(TEST_SCRIPT)
+SCRIPT_DEPEND=h5copy$(EXEEXT)
+
+# This is our main target, the h5copy tool
+bin_PROGRAMS=h5copy
+
+# All programs depend on the hdf5 and h5tools libraries
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in
new file mode 100644
index 0000000..8860b86
--- /dev/null
+++ b/tools/h5copy/Makefile.in
@@ -0,0 +1,833 @@
+# Makefile.in generated by automake 1.9.5 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005 Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# HDF5 Library Makefile(.in)
+#
+
+SOURCES = h5copy.c
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../..
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
+ $(top_srcdir)/config/commence.am \
+ $(top_srcdir)/config/conclude.am
+bin_PROGRAMS = h5copy$(EXEEXT)
+subdir = tools/h5copy
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+ $(ACLOCAL_M4)
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+PROGRAMS = $(bin_PROGRAMS)
+h5copy_SOURCES = h5copy.c
+h5copy_OBJECTS = h5copy.$(OBJEXT)
+h5copy_LDADD = $(LDADD)
+am__DEPENDENCIES_1 = $(top_builddir)/tools/lib/libh5tools.la
+am__DEPENDENCIES_2 = $(top_builddir)/src/libhdf5.la
+h5copy_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2)
+DEFAULT_INCLUDES = -I. -I$(srcdir) -I$(top_builddir)/src
+depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
+am__depfiles_maybe = depfiles
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --tag=CC --mode=compile $(CC) $(DEFS) \
+ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
+ $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --tag=CC --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+ $(AM_LDFLAGS) $(LDFLAGS) -o $@
+SOURCES = h5copy.c
+DIST_SOURCES = h5copy.c
+ETAGS = etags
+CTAGS = ctags
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+# Set the paths for AFS installs of autotools for Linux machines
+# Ideally, these tools should never be needed during the build.
+ACLOCAL = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/aclocal -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMDEP_FALSE = @AMDEP_FALSE@
+AMDEP_TRUE = @AMDEP_TRUE@
+AMTAR = @AMTAR@
+AM_MAKEFLAGS = @AM_MAKEFLAGS@
+AR = @AR@
+AUTOCONF = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoconf
+AUTOHEADER = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoheader
+AUTOMAKE = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/automake
+AWK = @AWK@
+BUILD_ALL_CONDITIONAL_FALSE = @BUILD_ALL_CONDITIONAL_FALSE@
+BUILD_ALL_CONDITIONAL_TRUE = @BUILD_ALL_CONDITIONAL_TRUE@
+BUILD_CXX_CONDITIONAL_FALSE = @BUILD_CXX_CONDITIONAL_FALSE@
+BUILD_CXX_CONDITIONAL_TRUE = @BUILD_CXX_CONDITIONAL_TRUE@
+BUILD_FORTRAN_CONDITIONAL_FALSE = @BUILD_FORTRAN_CONDITIONAL_FALSE@
+BUILD_FORTRAN_CONDITIONAL_TRUE = @BUILD_FORTRAN_CONDITIONAL_TRUE@
+BUILD_HDF5_HL_CONDITIONAL_FALSE = @BUILD_HDF5_HL_CONDITIONAL_FALSE@
+BUILD_HDF5_HL_CONDITIONAL_TRUE = @BUILD_HDF5_HL_CONDITIONAL_TRUE@
+BUILD_PABLO_CONDITIONAL_FALSE = @BUILD_PABLO_CONDITIONAL_FALSE@
+BUILD_PABLO_CONDITIONAL_TRUE = @BUILD_PABLO_CONDITIONAL_TRUE@
+BUILD_PARALLEL_CONDITIONAL_FALSE = @BUILD_PARALLEL_CONDITIONAL_FALSE@
+BUILD_PARALLEL_CONDITIONAL_TRUE = @BUILD_PARALLEL_CONDITIONAL_TRUE@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CCDEPMODE = @CCDEPMODE@
+CC_VERSION = @CC_VERSION@
+
+# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
+# but which shouldn't be exported to h5cc for building other programs.
+CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPP = @CPP@
+CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+CXXDEPMODE = @CXXDEPMODE@
+CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXX_SHARED_CONDITIONAL_FALSE = @CXX_SHARED_CONDITIONAL_FALSE@
+CXX_SHARED_CONDITIONAL_TRUE = @CXX_SHARED_CONDITIONAL_TRUE@
+CYGPATH_W = @CYGPATH_W@
+DEBUG_PKG = @DEBUG_PKG@
+DEFS = @DEFS@
+DEPDIR = @DEPDIR@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+ECHO_C = @ECHO_C@
+ECHO_N = @ECHO_N@
+ECHO_T = @ECHO_T@
+EGREP = @EGREP@
+EXEEXT = @EXEEXT@
+F77 = @F77@
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+F9XMODFLAG = @F9XMODFLAG@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCLIBS = @FCLIBS@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FORTRAN_SHARED_CONDITIONAL_FALSE = @FORTRAN_SHARED_CONDITIONAL_FALSE@
+FORTRAN_SHARED_CONDITIONAL_TRUE = @FORTRAN_SHARED_CONDITIONAL_TRUE@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+H5_CFLAGS = @H5_CFLAGS@
+H5_CPPFLAGS = @H5_CPPFLAGS@
+H5_CXXFLAGS = @H5_CXXFLAGS@
+H5_FCFLAGS = @H5_FCFLAGS@
+H5_LONE_COLON = @H5_LONE_COLON@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LDFLAGS = @LDFLAGS@
+LIBOBJS = @LIBOBJS@
+LIBS = @LIBS@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LTLIBOBJS = @LTLIBOBJS@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MAINT = @MAINT@
+MAINTAINER_MODE_FALSE = @MAINTAINER_MODE_FALSE@
+MAINTAINER_MODE_TRUE = @MAINTAINER_MODE_TRUE@
+MAKEINFO = @MAKEINFO@
+MPE = @MPE@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+OBJEXT = @OBJEXT@
+PACKAGE = @PACKAGE@
+PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
+PACKAGE_NAME = @PACKAGE_NAME@
+PACKAGE_STRING = @PACKAGE_STRING@
+PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_VERSION = @PACKAGE_VERSION@
+PARALLEL = @PARALLEL@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SET_MAKE = @SET_MAKE@
+
+# Hardcode SHELL to be /bin/sh. Most machines have this shell, and
+# on at least one machine configure fails to detect its existence (janus).
+# Also, when HDF5 is configured on one machine but run on another,
+# configure's automatic SHELL detection may not work on the build machine.
+SHELL = /bin/sh
+SIZE_T = @SIZE_T@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTPARALLEL = @TESTPARALLEL@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SCALEOFFSET = @USE_FILTER_SCALEOFFSET@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+ac_ct_AR = @ac_ct_AR@
+ac_ct_CC = @ac_ct_CC@
+ac_ct_CXX = @ac_ct_CXX@
+ac_ct_F77 = @ac_ct_F77@
+ac_ct_FC = @ac_ct_FC@
+ac_ct_RANLIB = @ac_ct_RANLIB@
+ac_ct_STRIP = @ac_ct_STRIP@
+am__fastdepCC_FALSE = @am__fastdepCC_FALSE@
+am__fastdepCC_TRUE = @am__fastdepCC_TRUE@
+am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@
+am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@
+am__include = @am__include@
+am__leading_dot = @am__leading_dot@
+am__quote = @am__quote@
+am__tar = @am__tar@
+am__untar = @am__untar@
+bindir = @bindir@
+build = @build@
+build_alias = @build_alias@
+build_cpu = @build_cpu@
+build_os = @build_os@
+build_vendor = @build_vendor@
+datadir = @datadir@
+exec_prefix = @exec_prefix@
+host = @host@
+host_alias = @host_alias@
+host_cpu = @host_cpu@
+host_os = @host_os@
+host_vendor = @host_vendor@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+infodir = @infodir@
+install_sh = @install_sh@
+libdir = @libdir@
+libexecdir = @libexecdir@
+localstatedir = @localstatedir@
+mandir = @mandir@
+mkdir_p = @mkdir_p@
+oldincludedir = @oldincludedir@
+prefix = @prefix@
+program_transform_name = @program_transform_name@
+sbindir = @sbindir@
+sharedstatedir = @sharedstatedir@
+sysconfdir = @sysconfdir@
+target_alias = @target_alias@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+TIME = time
+
+# Some machines need a command to run executables; this is that command
+# so that our tests will run.
+# We use RUNTESTS instead of RUNSERIAL directly because it may be that
+# some tests need to be run with a different command. Older versions
+# of the makefiles used the command
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+
+# Libraries to link to while building
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+docdir = $(exec_prefix)/doc
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+# Scripts used to build examples
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+
+# The trace script; this is used on source files from the C library to
+# insert tracing macros.
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+
+# .chkexe files are used to mark tests that have run successfully.
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+# Include src and tools/lib directories
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+# Test programs and scripts
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+
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+TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_)
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+ @for dep in $?; do \
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+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \
+ && exit 0; \
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+ done; \
+ echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5copy/Makefile'; \
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+ $(AUTOMAKE) --foreign tools/h5copy/Makefile
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+ if test -f $$p \
+ || test -f $$p1 \
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+ echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+ $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \
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+ echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
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+ rm -f $$p $$f ; \
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+ echo " export HDF5_PARAPREFIX"; \
+ echo " make check"; \
+ echo "**** end of Hint ****"; \
+ fi
+ @for test in $(TEST_PROG_PARA) dummy; do \
+ if test $$test != dummy; then \
+ $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
+ RUNTESTS="$(RUNPARALLEL)" || exit 1; \
+ fi; \
+ done
+ @for test in $(TEST_SCRIPT_PARA) dummy; do \
+ if test $$test != dummy; then \
+ $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
+ fi; \
+ done
+ @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \
+ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+ fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+ @for vfd in $(VFD_LIST) dummy; do \
+ if test $$vfd != dummy; then \
+ echo "============================"; \
+ echo "Testing Virtual File Driver $$vfd"; \
+ echo "============================"; \
+ HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check; \
+ fi; \
+ done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5copy/h5copy.c b/tools/h5copy/h5copy.c
new file mode 100644
index 0000000..604eb03
--- /dev/null
+++ b/tools/h5copy/h5copy.c
@@ -0,0 +1,355 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+#include "hdf5.h"
+#include "h5tools.h"
+#include "H5private.h"
+#include <string.h>
+#include <stdlib.h>
+
+const char *progname="h5copy";
+int d_status;
+
+/*-------------------------------------------------------------------------
+ * Function: usage
+ *
+ * Purpose: Prints a usage message on stderr and then returns.
+ *
+ * Return: void
+ *
+ * Programmer: Pedro Vicente Nunes, 7/8/2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+usage (void)
+{
+ fprintf(stderr, "\
+usage: h5copy [OPTIONS] [OBJECTS...]\n\
+ OBJECTS\n\
+ A pair of 2 HDF5 files (input and output). Each file name\n\
+ is optionally followed by a slash and an object\n\
+ name within the file (if no object is specified\n\
+ within the file then all objects are copied)\n\
+ OPTIONS\n\
+ -h Print a usage message and exit\n\
+ -v Print information about OBJECTS and OPTIONS\n\
+ -f Flag type\n\n\
+ Flag type is one of the following strings:\n\n\
+ SHALLOW (Copy only immediate members for groups)\n\
+ SOFT (Expand soft links into new objects)\n\
+ EXT (Expand external links into new objects)\n\
+ REF (Copy objects that are pointed by references)\n\
+ ATTR (Copy object without copying attributes)\n\n\
+ These flag types correspond to the following API symbols\n\n\
+ H5G_COPY_SHALLOW_HIERARCHY_FLAG\n\
+ H5G_COPY_EXPAND_SOFT_LINK_FLAG\n\
+ H5G_COPY_EXPAND_EXT_LINK_FLAG\n\
+ H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG\n\
+ H5G_COPY_WITHOUT_ATTR_FLAG\n");
+}
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: parse_flag
+ *
+ * Purpose: read the flag -f STRING
+ *
+ * STRING is one of the following (API symbol and description)
+ *
+ * SHALLOW H5G_COPY_SHALLOW_HIERARCHY_FLAG: Copy only immediate members for groups
+ * SOFT H5G_COPY_EXPAND_SOFT_LINK_FLAG: Expand soft links into new objects
+ * EXT H5G_COPY_EXPAND_EXT_LINK_FLAG: Expand external links into new objects
+ * REF H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG: Copy objects that are pointed by references
+ * ATTR H5G_COPY_WITHOUT_ATTR_FLAG Copy object without copying attributes
+ *
+ * Return: Success: SUCCEED
+ * Failure: FAIL
+ *
+ * Programmer: Pedro Vicente Nunes, 7/8/2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+static int parse_flag(const char* str_flag, unsigned *flag)
+{
+ unsigned fla=0;
+
+ if (strcmp(str_flag,"SHALLOW")==0)
+ {
+ fla = H5G_COPY_SHALLOW_HIERARCHY_FLAG;
+ }
+ else if (strcmp(str_flag,"SOFT")==0)
+ {
+ fla = H5G_COPY_EXPAND_SOFT_LINK_FLAG;
+ }
+ else if (strcmp(str_flag,"EXT")==0)
+ {
+ fla = H5G_COPY_EXPAND_EXT_LINK_FLAG;
+ }
+ else if (strcmp(str_flag,"REF")==0)
+ {
+ fla = H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG;
+ }
+ else if (strcmp(str_flag,"ATTR")==0)
+ {
+ fla = H5G_COPY_WITHOUT_ATTR_FLAG;
+ }
+ else
+ {
+ printf("Error in input flag\n");
+ return -1;
+ }
+
+ *flag = fla;
+
+ return 0;
+}
+
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: main
+ *
+ * Purpose: main program
+ *
+ * Programmer: Pedro Vicente Nunes
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int
+main (int argc, const char *argv[])
+{
+ hid_t fid_src=-1;
+ hid_t fid_dst=-1;
+ int argno;
+ static char root_name[] = "/";
+ char *fname_src=NULL;
+ char *fname_dst=NULL;
+ char *oname_src=NULL;
+ char *oname_dst=NULL;
+ char *x;
+ unsigned flag=0;
+ int verbose=0;
+ hid_t pid;
+ char str_flag[20];
+
+ /* switches come before non-switch arguments */
+ for (argno=1; argno<argc && '-'==argv[argno][0]; argno++)
+ {
+ if (strcmp(argv[argno], "-h") == 0)
+ {
+ usage();
+ }
+ else if (strcmp(argv[argno], "-v") == 0)
+ {
+ verbose = 1;
+ }
+ else if (strcmp(argv[argno], "-f") == 0)
+ {
+ /* parse flag */
+ if (parse_flag(argv[argno+1],&flag)<0)
+ {
+ usage();
+ exit(1);
+ }
+ strcpy(str_flag,argv[argno+1]);
+
+ /* jump to next */
+ ++argno;
+ }
+ }
+
+
+ /* no more arguments remain */
+ if (argno>=argc)
+ {
+ usage();
+ exit(1);
+ }
+
+/*-------------------------------------------------------------------------
+ *
+ * each remaining argument is an hdf5 file name followed by an optional slash
+ * and object name.
+ *
+ * Example: test1.h5/bar/baz
+ * \______/\______/
+ * file obj
+ *
+ * The dichotomy is determined by calling H5Fopen() repeatedly until it
+ * succeeds. The first call uses the entire name and each subsequent call
+ * chops off the last component. If we reach the beginning of the name
+ * then there must have been something wrong with the file (perhaps it
+ * doesn't exist).
+ *
+ *-------------------------------------------------------------------------*/
+
+ fname_src = HDstrdup(argv[argno++]);
+
+ while (fname_src && *fname_src)
+ {
+ fid_src = h5tools_fopen(fname_src, NULL, NULL, 0, argc, argv);
+
+ if (fid_src>=0)
+ break; /*success*/
+
+ /* shorten the file name; lengthen the object name */
+ x = oname_src;
+ oname_src = strrchr(fname_src, '/');
+ if (x)
+ *x = '/';
+ if (!oname_src)
+ break;
+ *oname_src = '\0';
+ }
+ if (oname_src)
+ oname_src++;
+ if (!oname_src || !*oname_src)
+ oname_src = root_name;
+
+
+/*-------------------------------------------------------------------------
+ * last argument, same logic, but the file does not exist, so we attempt to
+ * create one instead
+ *-------------------------------------------------------------------------*/
+
+ fname_dst = HDstrdup(argv[argno]);
+
+ while (fname_dst && *fname_dst)
+ {
+ H5E_BEGIN_TRY {
+ fid_dst = H5Fcreate(fname_dst, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ } H5E_END_TRY;
+
+ if (fid_dst>=0)
+ break; /*success*/
+
+ /* shorten the file name; lengthen the object name */
+ x = oname_dst;
+ oname_dst = strrchr(fname_dst, '/');
+ if (x)
+ *x = '/';
+ if (!oname_dst)
+ break;
+ *oname_dst = '\0';
+ }
+ if (oname_dst)
+ oname_dst++;
+ if (!oname_dst || !*oname_dst)
+ oname_dst = NULL;
+
+
+/*-------------------------------------------------------------------------
+ * check destination name
+ *-------------------------------------------------------------------------*/
+
+ if (oname_dst==NULL)
+ {
+ printf("Destination object name missing\n");
+ usage();
+ goto error;
+ }
+
+
+/*-------------------------------------------------------------------------
+ * print some info
+ *-------------------------------------------------------------------------*/
+
+ if (verbose)
+ {
+ printf("Copying file <%s> and object <%s> to file <%s> and object <%s>\n",
+ fname_src,
+ oname_src,
+ fname_dst,
+ oname_dst);
+ if (flag)
+ printf("Using %s flag\n", str_flag);
+ }
+
+
+/*-------------------------------------------------------------------------
+ * create a property list for copy
+ *-------------------------------------------------------------------------*/
+
+ /* create property to pass copy options */
+ if ( (pid = H5Pcreate(H5P_OBJECT_COPY)) < 0)
+ goto error;
+
+ /* set options for object copy */
+ if (flag)
+ {
+ if ( H5Pset_copy_object(pid, flag) < 0)
+ goto error;
+ }
+
+
+/*-------------------------------------------------------------------------
+ * do the copy
+ *-------------------------------------------------------------------------*/
+
+ if (H5Gcopy(fid_src, /* Source file or group identifier */
+ oname_src, /* Name of the source object to be copied */
+ fid_dst, /* Destination file or group identifier */
+ oname_dst, /* Name of the destination object */
+ pid, /* Properties which apply to the copy */
+ H5P_DEFAULT)<0) /* Properties which apply to the new hard link */
+ goto error;
+
+
+
+ /* close property */
+ if (H5Pclose(pid)<0)
+ goto error;
+
+ if (fid_src>0)
+ H5Fclose(fid_src);
+ if (fid_dst>0)
+ H5Fclose(fid_dst);
+
+ if (fname_src)
+ free(fname_src);
+ if (fname_dst)
+ free(fname_dst);
+
+
+ return 0;
+
+error:
+ printf("Error in copy...Exiting\n");
+ H5E_BEGIN_TRY {
+ H5Pclose(pid);
+ H5Fclose(fid_src);
+ H5Fclose(fid_dst);
+ } H5E_END_TRY;
+ if (fname_src)
+ free(fname_src);
+ if (fname_dst)
+ free(fname_dst);
+
+
+ return 1;
+}
+
diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh
new file mode 100644
index 0000000..c755503
--- /dev/null
+++ b/tools/h5copy/testh5copy.sh
@@ -0,0 +1,64 @@
+#! /bin/sh
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# Tests for the h5copy tool
+
+H5COPY=h5copy # The tool name
+H5COPY_BIN=`pwd`/$H5COPY # The path of the tool binary
+
+nerrors=0
+
+# The build (current) directory might be different than the source directory.
+if test -z "$srcdir"; then
+ srcdir=.
+fi
+test -d ../testfiles || mkdir ../testfiles
+
+# Print a line-line message left justified in a field of 70 characters
+# beginning with the word "Testing".
+TESTING() {
+ SPACES=" "
+ echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
+}
+
+# Run a test and print PASS or *FAIL*. If h5copy can complete
+# with exit status 0, consider it pass. If a test fails then increment
+# the `nerrors' global variable.
+
+TOOLTEST() {
+
+ TESTING $H5COPY $@
+
+
+}
+
+
+
+
+
+##############################################################################
+##############################################################################
+### T H E T E S T S ###
+##############################################################################
+##############################################################################
+
+
+#TOOLTEST -v test1.h5/array test1.out.h5/array
+
+
+#if test $nerrors -eq 0 ; then
+# echo "All h5copy tests passed."
+#fi
+
+#exit $nerrors
generated by cgit v0.12 at 2024-11-17 15:02:02 (GMT)