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-rw-r--r--src/.distdep96
-rw-r--r--src/H5ACprivate.h4
-rw-r--r--src/H5Apublic.h6
-rw-r--r--src/H5Dprivate.h2
-rw-r--r--src/H5Dpublic.h6
-rw-r--r--src/H5Epublic.h3
-rw-r--r--src/H5Flow.c2
-rw-r--r--src/H5Fprivate.h39
-rw-r--r--src/H5Fpublic.h7
-rw-r--r--src/H5HGprivate.h7
-rw-r--r--src/H5HLprivate.h6
-rw-r--r--src/H5Oprivate.h20
-rw-r--r--src/H5Ppublic.h85
-rw-r--r--src/H5RApublic.h7
-rw-r--r--src/H5Rpublic.h2
-rw-r--r--src/H5Spublic.h20
-rw-r--r--src/H5Tpkg.h7
-rw-r--r--src/H5Tpublic.h35
-rw-r--r--src/H5Vprivate.h22
-rw-r--r--src/H5Zpublic.h3
-rw-r--r--src/H5api_adpt.h2
-rw-r--r--src/H5private.h5
-rw-r--r--src/H5public.h7
-rw-r--r--src/Makefile.in2
-rw-r--r--test/.distdep61
-rw-r--r--test/dtypes.c6
-rw-r--r--tools/h5ls.c425
-rw-r--r--tools/h5tools.c150
-rw-r--r--tools/h5tools.h5
29 files changed, 766 insertions, 276 deletions
diff --git a/src/.distdep b/src/.distdep
index 4dfd2fb..b3261e3 100644
--- a/src/.distdep
+++ b/src/.distdep
@@ -234,17 +234,6 @@ H5Fistore.o: \
H5Zpublic.h \
H5Eprivate.h \
H5Epublic.h
-H5Flow.o: \
- H5Flow.c \
- H5private.h \
- H5public.h \
- H5config.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5Ipublic.h \
- H5Fprivate.h \
- H5Fpublic.h \
- H5Dpublic.h
H5Fmpio.o: \
H5Fmpio.c \
H5private.h \
@@ -304,42 +293,6 @@ H5Fstdio.o: \
H5Fprivate.h \
H5Fpublic.h \
H5Dpublic.h
-H5G.o: \
- H5G.c \
- H5private.h \
- H5public.h \
- H5config.h \
- H5Aprivate.h \
- H5Apublic.h \
- H5Ipublic.h \
- H5Gprivate.h \
- H5Gpublic.h \
- H5Bprivate.h \
- H5Bpublic.h \
- H5Fprivate.h \
- H5Fpublic.h \
- H5Dpublic.h \
- H5Dprivate.h \
- H5Oprivate.h \
- H5Opublic.h \
- H5HGprivate.h \
- H5HGpublic.h \
- H5Tprivate.h \
- H5Tpublic.h \
- H5Sprivate.h \
- H5Spublic.h \
- H5Zprivate.h \
- H5Zpublic.h \
- H5Eprivate.h \
- H5Epublic.h \
- H5Gpkg.h \
- H5ACprivate.h \
- H5ACpublic.h \
- H5HLprivate.h \
- H5HLpublic.h \
- H5Iprivate.h \
- H5MMprivate.h \
- H5MMpublic.h
H5Gent.o: \
H5Gent.c \
H5private.h \
@@ -1251,3 +1204,52 @@ H5Z.o: \
H5Sprivate.h \
H5Spublic.h \
H5Zprivate.h
+H5G.o: \
+ H5G.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5api_adpt.h \
+ H5Aprivate.h \
+ H5Apublic.h \
+ H5Ipublic.h \
+ H5Gprivate.h \
+ H5Gpublic.h \
+ H5Bprivate.h \
+ H5Bpublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Dpublic.h \
+ H5Dprivate.h \
+ H5Oprivate.h \
+ H5Opublic.h \
+ H5HGprivate.h \
+ H5HGpublic.h \
+ H5Tprivate.h \
+ H5Tpublic.h \
+ H5Sprivate.h \
+ H5Spublic.h \
+ H5Zprivate.h \
+ H5Zpublic.h \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5Gpkg.h \
+ H5ACprivate.h \
+ H5ACpublic.h \
+ H5HLprivate.h \
+ H5HLpublic.h \
+ H5Iprivate.h \
+ H5MMprivate.h \
+ H5MMpublic.h
+H5Flow.o: \
+ H5Flow.c \
+ H5private.h \
+ H5public.h \
+ H5config.h \
+ H5api_adpt.h \
+ H5Eprivate.h \
+ H5Epublic.h \
+ H5Ipublic.h \
+ H5Fprivate.h \
+ H5Fpublic.h \
+ H5Dpublic.h
diff --git a/src/H5ACprivate.h b/src/H5ACprivate.h
index 91cc2ca..5b6bb2b 100644
--- a/src/H5ACprivate.h
+++ b/src/H5ACprivate.h
@@ -113,8 +113,8 @@ void *H5AC_protect (H5F_t *f, const H5AC_class_t *type, const haddr_t *addr,
const void *udata1, void *udata2);
herr_t H5AC_unprotect (H5F_t *f, const H5AC_class_t *type,
const haddr_t *addr, void *thing);
-HDF5API herr_t H5AC_flush (H5F_t *f, const H5AC_class_t *type, const haddr_t *addr,
- hbool_t destroy);
+HDF5API herr_t H5AC_flush (H5F_t *f, const H5AC_class_t *type,
+ const haddr_t *addr, hbool_t destroy);
herr_t H5AC_create (H5F_t *f, intn size_hint);
herr_t H5AC_rename (H5F_t *f, const H5AC_class_t *type,
const haddr_t *old_addr, const haddr_t *new_addr);
diff --git a/src/H5Apublic.h b/src/H5Apublic.h
index aa40778..4b14943 100644
--- a/src/H5Apublic.h
+++ b/src/H5Apublic.h
@@ -27,8 +27,8 @@ typedef int (*H5A_operator_t)(hid_t location_id/*in*/,
const char *attr_name/*in*/, void *operator_data/*in,out*/);
/* Public function prototypes */
-HDF5API hid_t H5Acreate(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id,
- hid_t plist_id);
+HDF5API hid_t H5Acreate(hid_t loc_id, const char *name, hid_t type_id,
+ hid_t space_id, hid_t plist_id);
HDF5API hid_t H5Aopen_name(hid_t loc_id, const char *name);
HDF5API hid_t H5Aopen_idx(hid_t loc_id, unsigned idx);
HDF5API herr_t H5Awrite(hid_t attr_id, hid_t type_id, void *buf);
@@ -39,7 +39,7 @@ HDF5API hid_t H5Aget_type(hid_t attr_id);
HDF5API hssize_t H5Aget_name(hid_t attr_id, size_t buf_size, char *buf);
HDF5API int H5Aget_num_attrs(hid_t loc_id);
HDF5API int H5Aiterate(hid_t loc_id, unsigned *attr_num, H5A_operator_t op,
- void *op_data);
+ void *op_data);
HDF5API herr_t H5Adelete(hid_t loc_id, const char *name);
#ifdef __cplusplus
diff --git a/src/H5Dprivate.h b/src/H5Dprivate.h
index 534ddf4..470368a 100644
--- a/src/H5Dprivate.h
+++ b/src/H5Dprivate.h
@@ -17,7 +17,7 @@
#define _H5Dprivate_H
#include <H5Dpublic.h>
-#include <H5api_adpt.h>
+
/* Private headers needed by this file */
#include <H5private.h>
#include <H5Fprivate.h> /*for the H5F_t type */
diff --git a/src/H5Dpublic.h b/src/H5Dpublic.h
index 26937ae..e355de5 100644
--- a/src/H5Dpublic.h
+++ b/src/H5Dpublic.h
@@ -44,16 +44,16 @@ extern "C" {
#endif
HDF5API hid_t H5Dcreate (hid_t file_id, const char *name, hid_t type_id,
- hid_t space_id, hid_t plist_id);
+ hid_t space_id, hid_t plist_id);
HDF5API hid_t H5Dopen (hid_t file_id, const char *name);
HDF5API herr_t H5Dclose (hid_t dset_id);
HDF5API hid_t H5Dget_space (hid_t dset_id);
HDF5API hid_t H5Dget_type (hid_t dset_id);
HDF5API hid_t H5Dget_create_plist (hid_t dset_id);
HDF5API herr_t H5Dread (hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
- hid_t file_space_id, hid_t plist_id, void *buf/*out*/);
+ hid_t file_space_id, hid_t plist_id, void *buf/*out*/);
HDF5API herr_t H5Dwrite (hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
- hid_t file_space_id, hid_t plist_id, const void *buf);
+ hid_t file_space_id, hid_t plist_id, const void *buf);
HDF5API herr_t H5Dextend (hid_t dset_id, const hsize_t *size);
#ifdef __cplusplus
diff --git a/src/H5Epublic.h b/src/H5Epublic.h
index 77fcca5..abaf7d7 100644
--- a/src/H5Epublic.h
+++ b/src/H5Epublic.h
@@ -179,7 +179,8 @@ HDF5API herr_t H5Eset_auto (H5E_auto_t func, void *client_data);
HDF5API herr_t H5Eget_auto (H5E_auto_t *func, void **client_data);
HDF5API herr_t H5Eclear (void);
HDF5API herr_t H5Eprint (FILE *stream);
-HDF5API herr_t H5Ewalk (H5E_direction_t direction, H5E_walk_t func, void *client_data);
+HDF5API herr_t H5Ewalk (H5E_direction_t direction, H5E_walk_t func,
+ void *client_data);
HDF5API herr_t H5Ewalk_cb (int n, H5E_error_t *err_desc, void *client_data);
HDF5API const char *H5Eget_major (H5E_major_t major_number);
HDF5API const char *H5Eget_minor (H5E_minor_t minor_number);
diff --git a/src/H5Flow.c b/src/H5Flow.c
index 68492de..29891c2 100644
--- a/src/H5Flow.c
+++ b/src/H5Flow.c
@@ -481,7 +481,9 @@ H5F_low_access(const H5F_low_class_t *type, const char *name,
{
htri_t ret_value;
struct stat sb;
+#ifdef WIN32
int fid;
+#endif
FUNC_ENTER(H5F_low_size, FAIL);
assert(type);
diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h
index 637df69..740670c 100644
--- a/src/H5Fprivate.h
+++ b/src/H5Fprivate.h
@@ -550,28 +550,33 @@ H5F_t *H5F_open(const char *name, uintn flags,
const H5F_create_t *create_parms,
const H5F_access_t *access_parms);
herr_t H5F_close(H5F_t *f);
-HDF5API herr_t H5F_debug(H5F_t *f, const haddr_t *addr, FILE * stream, intn indent,
- intn fwidth);
+HDF5API herr_t H5F_debug(H5F_t *f, const haddr_t *addr, FILE * stream,
+ intn indent, intn fwidth);
HDF5API herr_t H5F_istore_debug(H5F_t *f, const haddr_t *addr, FILE * stream,
- intn indent, intn fwidth, int ndims);
+ intn indent, intn fwidth, int ndims);
herr_t H5F_mountpoint(struct H5G_entry_t *find/*in,out*/);
/* Functions that operate on array storage */
-HDF5API herr_t H5F_arr_create(H5F_t *f, struct H5O_layout_t *layout /*in,out*/);
+HDF5API herr_t H5F_arr_create(H5F_t *f,
+ struct H5O_layout_t *layout /*in,out*/);
HDF5API herr_t H5F_arr_read (H5F_t *f, const struct H5D_xfer_t *xfer,
- const struct H5O_layout_t *layout,
- const struct H5O_pline_t *pline,
- const struct H5O_fill_t *fill,
- const struct H5O_efl_t *efl, const hsize_t _hslab_size[],
- const hsize_t mem_size[], const hssize_t mem_offset[],
- const hssize_t file_offset[], void *_buf/*out*/);
+ const struct H5O_layout_t *layout,
+ const struct H5O_pline_t *pline,
+ const struct H5O_fill_t *fill,
+ const struct H5O_efl_t *efl,
+ const hsize_t _hslab_size[],
+ const hsize_t mem_size[],
+ const hssize_t mem_offset[],
+ const hssize_t file_offset[], void *_buf/*out*/);
HDF5API herr_t H5F_arr_write (H5F_t *f, const struct H5D_xfer_t *xfer,
- const struct H5O_layout_t *layout,
- const struct H5O_pline_t *pline,
- const struct H5O_fill_t *fill,
- const struct H5O_efl_t *efl, const hsize_t _hslab_size[],
- const hsize_t mem_size[], const hssize_t mem_offset[],
- const hssize_t file_offset[], const void *_buf);
+ const struct H5O_layout_t *layout,
+ const struct H5O_pline_t *pline,
+ const struct H5O_fill_t *fill,
+ const struct H5O_efl_t *efl,
+ const hsize_t _hslab_size[],
+ const hsize_t mem_size[],
+ const hssize_t mem_offset[],
+ const hssize_t file_offset[], const void *_buf);
/* Functions that operate on indexed storage */
herr_t H5F_istore_init (H5F_t *f);
@@ -600,7 +605,7 @@ herr_t H5F_istore_allocate (H5F_t *f,
/* Functions that operate on contiguous storage wrt boot block */
HDF5API herr_t H5F_block_read(H5F_t *f, const haddr_t *addr, hsize_t size,
- const H5D_transfer_t xfer_mode, void *buf);
+ const H5D_transfer_t xfer_mode, void *buf);
herr_t H5F_block_write(H5F_t *f, const haddr_t *addr, hsize_t size,
const H5D_transfer_t xfer_mode, const void *buf);
diff --git a/src/H5Fpublic.h b/src/H5Fpublic.h
index 1244f6b..f9e797b 100644
--- a/src/H5Fpublic.h
+++ b/src/H5Fpublic.h
@@ -84,9 +84,10 @@ extern "C" {
/* Functions in H5F.c */
HDF5API htri_t H5Fis_hdf5 (const char *filename);
-HDF5API hid_t H5Fcreate (const char *filename, unsigned flags, hid_t create_plist,
- hid_t access_plist);
-HDF5API hid_t H5Fopen (const char *filename, unsigned flags, hid_t access_plist);
+HDF5API hid_t H5Fcreate (const char *filename, unsigned flags,
+ hid_t create_plist, hid_t access_plist);
+HDF5API hid_t H5Fopen (const char *filename, unsigned flags,
+ hid_t access_plist);
HDF5API hid_t H5Freopen(hid_t file_id);
HDF5API herr_t H5Fflush(hid_t object_id, H5F_scope_t scope);
HDF5API herr_t H5Fclose (hid_t file_id);
diff --git a/src/H5HGprivate.h b/src/H5HGprivate.h
index 8ac9e7b..a22f265 100644
--- a/src/H5HGprivate.h
+++ b/src/H5HGprivate.h
@@ -93,12 +93,13 @@ typedef struct H5HG_t {
typedef struct H5HG_heap_t H5HG_heap_t;
H5HG_heap_t *H5HG_create (H5F_t *f, size_t size);
-HDF5API herr_t H5HG_insert (H5F_t *f, size_t size, void *obj, H5HG_t *hobj/*out*/);
+HDF5API herr_t H5HG_insert (H5F_t *f, size_t size, void *obj,
+ H5HG_t *hobj/*out*/);
void *H5HG_peek (H5F_t *f, H5HG_t *hobj);
HDF5API void *H5HG_read (H5F_t *f, H5HG_t *hobj, void *object);
intn H5HG_link (H5F_t *f, H5HG_t *hobj, intn adjust);
HDF5API herr_t H5HG_remove (H5F_t *f, H5HG_t *hobj);
-HDF5API herr_t H5HG_debug(H5F_t *f, const haddr_t *addr, FILE *stream, intn indent,
- intn fwidth);
+HDF5API herr_t H5HG_debug(H5F_t *f, const haddr_t *addr, FILE *stream,
+ intn indent, intn fwidth);
#endif
diff --git a/src/H5HLprivate.h b/src/H5HLprivate.h
index dad47f3..3ac2e7a 100644
--- a/src/H5HLprivate.h
+++ b/src/H5HLprivate.h
@@ -55,10 +55,10 @@ void *H5HL_read (H5F_t *f, const haddr_t *addr, size_t offset, size_t size,
void *buf);
HDF5API const void *H5HL_peek (H5F_t *f, const haddr_t *addr, size_t offset);
HDF5API size_t H5HL_insert (H5F_t *f, const haddr_t *addr, size_t size,
- const void *buf);
+ const void *buf);
herr_t H5HL_write (H5F_t *f, const haddr_t *addr, size_t offset, size_t size,
const void *buf);
herr_t H5HL_remove (H5F_t *f, const haddr_t *addr, size_t offset, size_t size);
-HDF5API herr_t H5HL_debug (H5F_t *f, const haddr_t *addr, FILE * stream, intn indent,
- intn fwidth);
+HDF5API herr_t H5HL_debug (H5F_t *f, const haddr_t *addr, FILE * stream,
+ intn indent, intn fwidth);
#endif
diff --git a/src/H5Oprivate.h b/src/H5Oprivate.h
index 76a7fdb..6c13966 100644
--- a/src/H5Oprivate.h
+++ b/src/H5Oprivate.h
@@ -18,7 +18,7 @@
#define _H5Oprivate_H
#include <H5Opublic.h>
-#include <H5api_adpt.h>
+
/* Private headers needed by this file */
#include <H5private.h>
#include <H5Fprivate.h>
@@ -268,25 +268,27 @@ typedef struct H5O_stab_t {
} H5O_stab_t;
/* General message operators */
-HDF5API herr_t H5O_create (H5F_t *f, size_t size_hint, H5G_entry_t *ent/*out*/);
+HDF5API herr_t H5O_create (H5F_t *f, size_t size_hint,
+ H5G_entry_t *ent/*out*/);
herr_t H5O_open (H5G_entry_t *ent);
HDF5API herr_t H5O_close (H5G_entry_t *ent);
intn H5O_link (H5G_entry_t *ent, intn adjust);
intn H5O_count (H5G_entry_t *ent, const H5O_class_t *type);
htri_t H5O_exists(H5G_entry_t *ent, const H5O_class_t *type, intn sequence);
-HDF5API void *H5O_read (H5G_entry_t *ent, const H5O_class_t *type, intn sequence,
- void *mesg);
-HDF5API intn H5O_modify (H5G_entry_t *ent, const H5O_class_t *type, intn overwrite,
- uintn flags, const void *mesg);
+HDF5API void *H5O_read (H5G_entry_t *ent, const H5O_class_t *type,
+ intn sequence, void *mesg);
+HDF5API intn H5O_modify (H5G_entry_t *ent, const H5O_class_t *type,
+ intn overwrite, uintn flags, const void *mesg);
herr_t H5O_touch(H5G_entry_t *ent, hbool_t force);
-HDF5API herr_t H5O_remove (H5G_entry_t *ent, const H5O_class_t *type, intn sequence);
+HDF5API herr_t H5O_remove (H5G_entry_t *ent, const H5O_class_t *type,
+ intn sequence);
herr_t H5O_reset (const H5O_class_t *type, void *native);
void *H5O_free (const H5O_class_t *type, void *mesg);
void *H5O_copy (const H5O_class_t *type, const void *mesg, void *dst);
herr_t H5O_share (H5F_t *f, const H5O_class_t *type, const void *mesg,
H5HG_t *hobj/*out*/);
-HDF5API herr_t H5O_debug (H5F_t *f, const haddr_t *addr, FILE * stream, intn indent,
- intn fwidth);
+HDF5API herr_t H5O_debug (H5F_t *f, const haddr_t *addr, FILE * stream,
+ intn indent, intn fwidth);
/* EFL operators */
hsize_t H5O_efl_total_size (H5O_efl_t *efl);
diff --git a/src/H5Ppublic.h b/src/H5Ppublic.h
index bbbd9ab..d22ba2e 100644
--- a/src/H5Ppublic.h
+++ b/src/H5Ppublic.h
@@ -48,16 +48,19 @@ HDF5API hid_t H5Pcreate (H5P_class_t type);
HDF5API herr_t H5Pclose (hid_t plist_id);
HDF5API hid_t H5Pcopy (hid_t plist_id);
HDF5API H5P_class_t H5Pget_class (hid_t plist_id);
-HDF5API herr_t H5Pget_version (hid_t plist_id, int *boot/*out*/, int *freelist/*out*/,
- int *stab/*out*/, int *shhdr/*out*/);
+HDF5API herr_t H5Pget_version (hid_t plist_id, int *boot/*out*/,
+ int *freelist/*out*/, int *stab/*out*/,
+ int *shhdr/*out*/);
HDF5API herr_t H5Pset_userblock (hid_t plist_id, hsize_t size);
HDF5API herr_t H5Pget_userblock (hid_t plist_id, hsize_t *size);
-HDF5API herr_t H5Pset_alignment (hid_t fapl_id, hsize_t threshold, hsize_t alignment);
+HDF5API herr_t H5Pset_alignment (hid_t fapl_id, hsize_t threshold,
+ hsize_t alignment);
HDF5API herr_t H5Pget_alignment (hid_t fapl_id, hsize_t *threshold/*out*/,
- hsize_t *alignment/*out*/);
-HDF5API herr_t H5Pset_sizes (hid_t plist_id, size_t sizeof_addr, size_t sizeof_size);
+ hsize_t *alignment/*out*/);
+HDF5API herr_t H5Pset_sizes (hid_t plist_id, size_t sizeof_addr,
+ size_t sizeof_size);
HDF5API herr_t H5Pget_sizes (hid_t plist_id, size_t *sizeof_addr/*out*/,
- size_t *sizeof_size/*out*/);
+ size_t *sizeof_size/*out*/);
HDF5API herr_t H5Pset_sym_k (hid_t plist_id, int ik, int lk);
HDF5API herr_t H5Pget_sym_k (hid_t plist_id, int *ik/*out*/, int *lk/*out*/);
HDF5API herr_t H5Pset_istore_k (hid_t plist_id, int ik);
@@ -67,11 +70,11 @@ HDF5API H5D_layout_t H5Pget_layout (hid_t plist_id);
HDF5API herr_t H5Pset_chunk (hid_t plist_id, int ndims, const hsize_t dim[]);
HDF5API int H5Pget_chunk (hid_t plist_id, int max_ndims, hsize_t dim[]/*out*/);
HDF5API herr_t H5Pset_external (hid_t plist_id, const char *name, off_t offset,
- hsize_t size);
+ hsize_t size);
HDF5API int H5Pget_external_count (hid_t plist_id);
HDF5API herr_t H5Pget_external (hid_t plist_id, int idx, size_t name_size,
- char *name/*out*/, off_t *offset/*out*/,
- hsize_t *size/*out*/);
+ char *name/*out*/, off_t *offset/*out*/,
+ hsize_t *size/*out*/);
HDF5API H5F_driver_t H5Pget_driver (hid_t plist_id);
HDF5API herr_t H5Pset_stdio (hid_t plist_id);
HDF5API herr_t H5Pget_stdio (hid_t plist_id);
@@ -79,49 +82,61 @@ HDF5API herr_t H5Pset_sec2 (hid_t plist_id);
HDF5API herr_t H5Pget_sec2 (hid_t plist_id);
HDF5API herr_t H5Pset_core (hid_t plist_id, size_t increment);
HDF5API herr_t H5Pget_core (hid_t plist_id, size_t *increment/*out*/);
-HDF5API herr_t H5Pset_split (hid_t plist_id, const char *meta_ext, hid_t meta_plist_id,
- const char *raw_ext, hid_t raw_plist_id);
+HDF5API herr_t H5Pset_split (hid_t plist_id, const char *meta_ext,
+ hid_t meta_plist_id, const char *raw_ext,
+ hid_t raw_plist_id);
HDF5API herr_t H5Pget_split (hid_t plist_id, size_t meta_ext_size,
- char *meta_ext/*out*/, hid_t *meta_properties/*out*/,
- size_t raw_ext_size, char *raw_ext/*out*/,
- hid_t *raw_properties/*out*/);
+ char *meta_ext/*out*/,
+ hid_t *meta_properties/*out*/,
+ size_t raw_ext_size, char *raw_ext/*out*/,
+ hid_t *raw_properties/*out*/);
-HDF5API herr_t H5Pset_family (hid_t plist_id, hsize_t memb_size, hid_t memb_plist_id);
+HDF5API herr_t H5Pset_family (hid_t plist_id, hsize_t memb_size,
+ hid_t memb_plist_id);
HDF5API herr_t H5Pget_family (hid_t plist_id, hsize_t *memb_size/*out*/,
- hid_t *memb_plist_id/*out*/);
-HDF5API herr_t H5Pset_buffer (hid_t plist_id, size_t size, void *tconv, void *bkg);
-HDF5API size_t H5Pget_buffer (hid_t plist_id, void **tconv/*out*/, void **bkg/*out*/);
+ hid_t *memb_plist_id/*out*/);
+HDF5API herr_t H5Pset_buffer (hid_t plist_id, size_t size, void *tconv,
+ void *bkg);
+HDF5API size_t H5Pget_buffer (hid_t plist_id, void **tconv/*out*/,
+ void **bkg/*out*/);
HDF5API herr_t H5Pset_preserve (hid_t plist_id, hbool_t status);
HDF5API int H5Pget_preserve (hid_t plist_id);
-HDF5API herr_t H5Pset_filter (hid_t plist_id, H5Z_filter_t filter, unsigned int flags,
- size_t cd_nelmts, const unsigned int c_values[]);
+HDF5API herr_t H5Pset_filter (hid_t plist_id, H5Z_filter_t filter,
+ unsigned int flags, size_t cd_nelmts,
+ const unsigned int c_values[]);
HDF5API int H5Pget_nfilters(hid_t plist_id);
HDF5API H5Z_filter_t H5Pget_filter(hid_t plist_id, int filter,
- unsigned int *flags/*out*/,
- size_t *cd_nelmts/*out*/,
- unsigned cd_values[]/*out*/,
- size_t namelen, char name[]);
+ unsigned int *flags/*out*/,
+ size_t *cd_nelmts/*out*/,
+ unsigned cd_values[]/*out*/,
+ size_t namelen, char name[]);
HDF5API herr_t H5Pset_deflate (hid_t plist_id, unsigned aggression);
HDF5API herr_t H5Pset_cache (hid_t plist_id, int mdc_nelmts, int rdcc_nelmts,
- size_t rdcc_nbytes, double rdcc_w0);
+ size_t rdcc_nbytes, double rdcc_w0);
HDF5API herr_t H5Pget_cache (hid_t plist_id, int *mdc_nelmts/*out*/,
- int *rdcc_nelmts/*out*/, size_t *rdcc_nbytes/*out*/,
- double *rdcc_w0);
-HDF5API herr_t H5Pset_hyper_cache(hid_t plist_id, unsigned cache, unsigned limit);
-HDF5API herr_t H5Pget_hyper_cache(hid_t plist_id, unsigned *cache, unsigned *limit);
+ int *rdcc_nelmts/*out*/,
+ size_t *rdcc_nbytes/*out*/, double *rdcc_w0);
+HDF5API herr_t H5Pset_hyper_cache(hid_t plist_id, unsigned cache,
+ unsigned limit);
+HDF5API herr_t H5Pget_hyper_cache(hid_t plist_id, unsigned *cache,
+ unsigned *limit);
HDF5API herr_t H5Pset_btree_ratios(hid_t plist_id, double left, double middle,
- double right);
+ double right);
HDF5API herr_t H5Pget_btree_ratios(hid_t plist_id, double *left/*out*/,
- double *middle/*out*/, double *right/*out*/);
-HDF5API herr_t H5Pset_fill_value(hid_t plist_id, hid_t type_id, const void *value);
-HDF5API herr_t H5Pget_fill_value(hid_t plist_id, hid_t type_id, void *value/*out*/);
+ double *middle/*out*/,
+ double *right/*out*/);
+HDF5API herr_t H5Pset_fill_value(hid_t plist_id, hid_t type_id,
+ const void *value);
+HDF5API herr_t H5Pget_fill_value(hid_t plist_id, hid_t type_id,
+ void *value/*out*/);
#ifdef HAVE_PARALLEL
HDF5API herr_t H5Pset_mpi (hid_t plist_id, MPI_Comm comm, MPI_Info info);
HDF5API herr_t H5Pget_mpi (hid_t plist_id, MPI_Comm *comm/*out*/,
- MPI_Info *info/*out*/);
+ MPI_Info *info/*out*/);
HDF5API herr_t H5Pset_xfer (hid_t plist_id, H5D_transfer_t data_xfer_mode);
-HDF5API herr_t H5Pget_xfer (hid_t plist_id, H5D_transfer_t *data_xfer_mode/*out*/);
+HDF5API herr_t H5Pget_xfer (hid_t plist_id,
+ H5D_transfer_t *data_xfer_mode/*out*/);
#endif
HDF5API herr_t H5Pset_gc_references(hid_t fapl_id, unsigned gc_ref);
diff --git a/src/H5RApublic.h b/src/H5RApublic.h
index c246743..67ee710 100644
--- a/src/H5RApublic.h
+++ b/src/H5RApublic.h
@@ -14,13 +14,14 @@
extern "C" {
#endif
-HDF5API hid_t H5RAcreate(hid_t loc_id, const char *name, hid_t type_id, hid_t plist_id);
+HDF5API hid_t H5RAcreate(hid_t loc_id, const char *name, hid_t type_id,
+ hid_t plist_id);
HDF5API hid_t H5RAopen(hid_t loc_id, const char *name);
HDF5API herr_t H5RAclose(hid_t array_id);
HDF5API herr_t H5RAwrite(hid_t array_id, hssize_t start_row, hsize_t nrows,
- hid_t type_id, hsize_t size[], void *buf[]);
+ hid_t type_id, hsize_t size[], void *buf[]);
HDF5API herr_t H5RAread(hid_t array_id, hssize_t start_row, hsize_t nrows,
- hid_t type_id, hsize_t size[], void *buf[]);
+ hid_t type_id, hsize_t size[], void *buf[]);
#ifdef __cplusplus
}
diff --git a/src/H5Rpublic.h b/src/H5Rpublic.h
index 8a78e85..5e349a8 100644
--- a/src/H5Rpublic.h
+++ b/src/H5Rpublic.h
@@ -67,7 +67,7 @@ extern "C" {
/* Functions in H5R.c */
HDF5API herr_t H5Rcreate(void *ref, hid_t loc_id, const char *name,
- H5R_type_t ref_type, hid_t space_id);
+ H5R_type_t ref_type, hid_t space_id);
HDF5API hid_t H5Rdereference(hid_t dataset, H5R_type_t ref_type, void *ref);
HDF5API hid_t H5Rget_region(hid_t dataset, H5R_type_t ref_type, void *ref);
diff --git a/src/H5Spublic.h b/src/H5Spublic.h
index ed25015..8beef9b 100644
--- a/src/H5Spublic.h
+++ b/src/H5Spublic.h
@@ -54,23 +54,27 @@ extern "C" {
/* Functions in H5S.c */
HDF5API hid_t H5Screate(H5S_class_t type);
HDF5API hid_t H5Screate_simple (int rank, const hsize_t dims[],
- const hsize_t maxdims[]);
-HDF5API herr_t H5Sset_extent_simple (hid_t space_id, int rank, const hsize_t dims[],
- const hsize_t max[]);
+ const hsize_t maxdims[]);
+HDF5API herr_t H5Sset_extent_simple (hid_t space_id, int rank,
+ const hsize_t dims[],
+ const hsize_t max[]);
HDF5API hid_t H5Scopy (hid_t space_id);
HDF5API herr_t H5Sclose (hid_t space_id);
HDF5API hsize_t H5Sget_simple_extent_npoints (hid_t space_id);
HDF5API int H5Sget_simple_extent_ndims (hid_t space_id);
HDF5API int H5Sget_simple_extent_dims (hid_t space_id, hsize_t dims[],
- hsize_t maxdims[]);
+ hsize_t maxdims[]);
HDF5API htri_t H5Sis_simple (hid_t space_id);
HDF5API herr_t H5Sset_space (hid_t space_id, int rank, const hsize_t *dims);
HDF5API hssize_t H5Sget_select_npoints (hid_t spaceid);
HDF5API herr_t H5Sselect_hyperslab (hid_t space_id, H5S_seloper_t op,
- const hssize_t start[], const hsize_t _stride[],
- const hsize_t count[], const hsize_t _block[]);
-HDF5API herr_t H5Sselect_elements (hid_t space_id, H5S_seloper_t op, size_t num_elemn,
- const hssize_t **coord);
+ const hssize_t start[],
+ const hsize_t _stride[],
+ const hsize_t count[],
+ const hsize_t _block[]);
+HDF5API herr_t H5Sselect_elements (hid_t space_id, H5S_seloper_t op,
+ size_t num_elemn,
+ const hssize_t **coord);
HDF5API H5S_class_t H5Sget_simple_extent_type (hid_t space_id);
HDF5API herr_t H5Sset_extent_none (hid_t space_id);
HDF5API herr_t H5Sextent_copy (hid_t dst_id,hid_t src_id);
diff --git a/src/H5Tpkg.h b/src/H5Tpkg.h
index 071a9e4..462da57 100644
--- a/src/H5Tpkg.h
+++ b/src/H5Tpkg.h
@@ -366,12 +366,13 @@ herr_t H5T_conv_i32le_f64le (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
/* Bit twiddling functions */
HDF5API void H5T_bit_copy (uint8_t *dst, size_t dst_offset, const uint8_t *src,
- size_t src_offset, size_t size);
-HDF5API void H5T_bit_set (uint8_t *buf, size_t offset, size_t size, hbool_t value);
+ size_t src_offset, size_t size);
+HDF5API void H5T_bit_set (uint8_t *buf, size_t offset, size_t size,
+ hbool_t value);
HDF5API hsize_t H5T_bit_get_d (uint8_t *buf, size_t offset, size_t size);
void H5T_bit_set_d (uint8_t *buf, size_t offset, size_t size, hsize_t val);
HDF5API ssize_t H5T_bit_find (uint8_t *buf, size_t offset, size_t size,
- H5T_sdir_t direction, hbool_t value);
+ H5T_sdir_t direction, hbool_t value);
htri_t H5T_bit_inc(uint8_t *buf, size_t start, size_t size);
#endif
diff --git a/src/H5Tpublic.h b/src/H5Tpublic.h
index c6ebf1e..e6a84c4 100644
--- a/src/H5Tpublic.h
+++ b/src/H5Tpublic.h
@@ -395,16 +395,18 @@ HDF5API htri_t H5Tcommitted (hid_t type_id);
/* Operations defined on compound data types */
HDF5API herr_t H5Tinsert (hid_t parent_id, const char *name, size_t offset,
hid_t member_id);
-HDF5API herr_t H5Tinsert_array (hid_t parent_id, const char *name, size_t offset,
- int ndims, const size_t dim[], const int *perm,
- hid_t member_id);
+HDF5API herr_t H5Tinsert_array (hid_t parent_id, const char *name,
+ size_t offset, int ndims, const size_t dim[],
+ const int *perm, hid_t member_id);
HDF5API herr_t H5Tpack (hid_t type_id);
/* Operations defined on enumeration data types */
HDF5API hid_t H5Tenum_create(hid_t base_id);
HDF5API herr_t H5Tenum_insert(hid_t type, const char *name, void *value);
-HDF5API hid_t H5Tenum_nameof(hid_t type, void *value, char *name/*out*/, size_t size);
-HDF5API hid_t H5Tenum_valueof(hid_t type, const char *name, void *value/*out*/);
+HDF5API hid_t H5Tenum_nameof(hid_t type, void *value, char *name/*out*/,
+ size_t size);
+HDF5API hid_t H5Tenum_valueof(hid_t type, const char *name,
+ void *value/*out*/);
/* Querying property values */
HDF5API hid_t H5Tget_super(hid_t type);
@@ -414,11 +416,11 @@ HDF5API H5T_order_t H5Tget_order(hid_t type_id);
HDF5API size_t H5Tget_precision(hid_t type_id);
HDF5API size_t H5Tget_offset(hid_t type_id);
HDF5API herr_t H5Tget_pad(hid_t type_id, H5T_pad_t *lsb/*out*/,
- H5T_pad_t *msb/*out*/);
+ H5T_pad_t *msb/*out*/);
HDF5API H5T_sign_t H5Tget_sign(hid_t type_id);
HDF5API herr_t H5Tget_fields(hid_t type_id, size_t *spos/*out*/,
- size_t *epos/*out*/, size_t *esize/*out*/,
- size_t *mpos/*out*/, size_t *msize/*out*/);
+ size_t *epos/*out*/, size_t *esize/*out*/,
+ size_t *mpos/*out*/, size_t *msize/*out*/);
HDF5API size_t H5Tget_ebias(hid_t type_id);
HDF5API H5T_norm_t H5Tget_norm(hid_t type_id);
HDF5API H5T_pad_t H5Tget_inpad(hid_t type_id);
@@ -427,9 +429,10 @@ HDF5API int H5Tget_nmembers(hid_t type_id);
HDF5API char *H5Tget_member_name(hid_t type_id, int membno);
HDF5API size_t H5Tget_member_offset(hid_t type_id, int membno);
HDF5API int H5Tget_member_dims(hid_t type_id, int membno, size_t dims[]/*out*/,
- int perm[]/*out*/);
+ int perm[]/*out*/);
HDF5API hid_t H5Tget_member_type(hid_t type_id, int membno);
-HDF5API herr_t H5Tget_member_value(hid_t type_id, int membno, void *value/*out*/);
+HDF5API herr_t H5Tget_member_value(hid_t type_id, int membno,
+ void *value/*out*/);
HDF5API H5T_cset_t H5Tget_cset(hid_t type_id);
/* Setting property values */
@@ -439,8 +442,8 @@ HDF5API herr_t H5Tset_precision (hid_t type_id, size_t prec);
HDF5API herr_t H5Tset_offset (hid_t type_id, size_t offset);
HDF5API herr_t H5Tset_pad (hid_t type_id, H5T_pad_t lsb, H5T_pad_t msb);
HDF5API herr_t H5Tset_sign (hid_t type_id, H5T_sign_t sign);
-HDF5API herr_t H5Tset_fields (hid_t type_id, size_t spos, size_t epos, size_t esize,
- size_t mpos, size_t msize);
+HDF5API herr_t H5Tset_fields (hid_t type_id, size_t spos, size_t epos,
+ size_t esize, size_t mpos, size_t msize);
HDF5API herr_t H5Tset_ebias (hid_t type_id, size_t ebias);
HDF5API herr_t H5Tset_norm (hid_t type_id, H5T_norm_t norm);
HDF5API herr_t H5Tset_inpad (hid_t type_id, H5T_pad_t pad);
@@ -449,12 +452,12 @@ HDF5API herr_t H5Tset_strpad (hid_t type_id, H5T_str_t strpad);
/* Type conversion database */
HDF5API herr_t H5Tregister(H5T_pers_t pers, const char *name, hid_t src_id,
- hid_t dst_id, H5T_conv_t func);
+ hid_t dst_id, H5T_conv_t func);
HDF5API herr_t H5Tunregister (H5T_pers_t pers, const char *name, hid_t src_id,
- hid_t dst_id, H5T_conv_t func);
+ hid_t dst_id, H5T_conv_t func);
HDF5API H5T_conv_t H5Tfind (hid_t src_id, hid_t dst_id, H5T_cdata_t **pcdata);
-HDF5API herr_t H5Tconvert (hid_t src_id, hid_t dst_id, size_t nelmts, void *buf,
- void *background);
+HDF5API herr_t H5Tconvert (hid_t src_id, hid_t dst_id, size_t nelmts,
+ void *buf, void *background);
HDF5API H5T_overflow_t H5Tget_overflow(void);
HDF5API herr_t H5Tset_overflow(H5T_overflow_t func);
diff --git a/src/H5Vprivate.h b/src/H5Vprivate.h
index 4e0ae3d..31178dd 100644
--- a/src/H5Vprivate.h
+++ b/src/H5Vprivate.h
@@ -9,7 +9,7 @@
#define H5Vprivate_H
#include <H5private.h>
-#include <H5api_adpt.h>
+
/* Vector comparison functions like Fortran66 comparison operators */
#define H5V_vector_eq_s(N,V1,V2) (H5V_vector_cmp_s (N, V1, V2)==0)
#define H5V_vector_lt_s(N,V1,V2) (H5V_vector_cmp_s (N, V1, V2)<0)
@@ -41,19 +41,21 @@ htri_t H5V_hyper_disjointp(intn n, const hssize_t *offset1,
const hsize_t *size1, const hssize_t *offset2,
const hsize_t *size2);
htri_t H5V_hyper_eq(intn n, const hssize_t *offset1, const hsize_t *size1,
- const hssize_t *offset2, const hsize_t *size2);
-HDF5API herr_t H5V_hyper_fill(intn n, const hsize_t *_size, const hsize_t *total_size,
- const hssize_t *offset, void *_dst, uintn fill_value);
+ const hssize_t *offset2, const hsize_t *size2);
+HDF5API herr_t H5V_hyper_fill(intn n, const hsize_t *_size,
+ const hsize_t *total_size,
+ const hssize_t *offset, void *_dst,
+ uintn fill_value);
HDF5API herr_t H5V_hyper_copy(intn n, const hsize_t *size,
- const hsize_t *dst_total_size,
- const hssize_t *dst_offset, void *_dst,
- const hsize_t *src_total_size,
- const hssize_t *src_offset, const void *_src);
+ const hsize_t *dst_total_size,
+ const hssize_t *dst_offset, void *_dst,
+ const hsize_t *src_total_size,
+ const hssize_t *src_offset, const void *_src);
herr_t H5V_stride_fill(intn n, hsize_t elmt_size, const hsize_t *size,
const hssize_t *stride, void *_dst, uintn fill_value);
HDF5API herr_t H5V_stride_copy(intn n, hsize_t elmt_size, const hsize_t *_size,
- const hssize_t *dst_stride, void *_dst,
- const hssize_t *src_stride, const void *_src);
+ const hssize_t *dst_stride, void *_dst,
+ const hssize_t *src_stride, const void *_src);
herr_t H5V_stride_copy2(hsize_t nelmts, hsize_t elmt_size, intn dst_n,
const hsize_t *dst_size, const hssize_t *dst_stride,
void *_dst, intn src_n, const hsize_t *src_size,
diff --git a/src/H5Zpublic.h b/src/H5Zpublic.h
index deba4dc..89536d4 100644
--- a/src/H5Zpublic.h
+++ b/src/H5Zpublic.h
@@ -52,7 +52,8 @@ typedef size_t (*H5Z_func_t)(unsigned int flags, size_t cd_nelmts,
extern "C" {
#endif
-HDF5API herr_t H5Zregister(H5Z_filter_t id, const char *comment, H5Z_func_t filter);
+HDF5API herr_t H5Zregister(H5Z_filter_t id, const char *comment,
+ H5Z_func_t filter);
#ifdef __cplusplus
}
diff --git a/src/H5api_adpt.h b/src/H5api_adpt.h
index 0dc077a..603b9b5 100644
--- a/src/H5api_adpt.h
+++ b/src/H5api_adpt.h
@@ -22,4 +22,4 @@
#define HDF5GLOBAL extern
#endif
-#endif /* H5API_ADPT_H */ \ No newline at end of file
+#endif /* H5API_ADPT_H */
diff --git a/src/H5private.h b/src/H5private.h
index e44d6f8..61d6bbb 100644
--- a/src/H5private.h
+++ b/src/H5private.h
@@ -13,7 +13,7 @@
#ifndef _H5private_H
#define _H5private_H
#include <H5public.h> /* Include Public Definitions */
-#include <H5api_adpt.h>
+
/*
* Include ANSI-C header files.
*/
@@ -404,7 +404,8 @@ typedef struct {
HDF5API void H5_timer_reset (H5_timer_t *timer);
HDF5API void H5_timer_begin (H5_timer_t *timer);
-HDF5API void H5_timer_end (H5_timer_t *sum/*in,out*/, H5_timer_t *timer/*in,out*/);
+HDF5API void H5_timer_end (H5_timer_t *sum/*in,out*/,
+ H5_timer_t *timer/*in,out*/);
HDF5API void H5_bandwidth(char *buf/*out*/, double nbytes, double nseconds);
/*
diff --git a/src/H5public.h b/src/H5public.h
index 71d8651..8bf1b5c 100644
--- a/src/H5public.h
+++ b/src/H5public.h
@@ -35,6 +35,7 @@ static char RcsId[] = "@(#)$Revision$";
# include <mpio.h>
#endif
#include <H5api_adpt.h>
+
/* Version numbers */
#define H5_VERS_MAJOR 1 /* For major interface/format changes */
#define H5_VERS_MINOR 1 /* For minor interface/format changes */
@@ -101,8 +102,10 @@ extern "C" {
HDF5API herr_t H5open (void);
HDF5API herr_t H5close (void);
HDF5API herr_t H5dont_atexit (void);
-HDF5API herr_t H5get_libversion (unsigned *majnum, unsigned *minnum, unsigned *relnum);
-HDF5API herr_t H5check_version (unsigned majnum, unsigned minnum, unsigned relnum);
+HDF5API herr_t H5get_libversion (unsigned *majnum, unsigned *minnum,
+ unsigned *relnum);
+HDF5API herr_t H5check_version (unsigned majnum, unsigned minnum,
+ unsigned relnum);
#ifdef __cplusplus
}
diff --git a/src/Makefile.in b/src/Makefile.in
index d5c152e..ca2a302 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -33,7 +33,7 @@ PUB_HDR=H5public.h H5Apublic.h H5ACpublic.h H5Bpublic.h H5Dpublic.h \
H5Epublic.h H5Fpublic.h H5Gpublic.h H5HGpublic.h H5HLpublic.h \
H5Ipublic.h H5MFpublic.h H5MMpublic.h H5Opublic.h H5Ppublic.h \
H5Rpublic.h H5RApublic.h H5Spublic.h H5Tpublic.h H5Zpublic.h H5config.h \
- hdf5.h
+ hdf5.h H5api_adpt.h
# Other header files (not to be installed)...
PRIVATE_HDR=H5private.h H5Aprivate.h H5Apkg.h H5ACprivate.h H5Bprivate.h \
diff --git a/test/.distdep b/test/.distdep
index 6645e72..9ef14ad 100644
--- a/test/.distdep
+++ b/test/.distdep
@@ -172,36 +172,6 @@ dsets.o: \
../src/H5HGprivate.h \
../src/H5Fprivate.h \
../src/H5Rprivate.h
-dtypes.o: \
- dtypes.c \
- h5test.h \
- ../src/hdf5.h \
- ../src/H5public.h \
- ../src/H5config.h \
- ../src/H5Ipublic.h \
- ../src/H5Apublic.h \
- ../src/H5ACpublic.h \
- ../src/H5Bpublic.h \
- ../src/H5Dpublic.h \
- ../src/H5Epublic.h \
- ../src/H5Fpublic.h \
- ../src/H5Gpublic.h \
- ../src/H5HGpublic.h \
- ../src/H5HLpublic.h \
- ../src/H5MFpublic.h \
- ../src/H5MMpublic.h \
- ../src/H5Opublic.h \
- ../src/H5Ppublic.h \
- ../src/H5Zpublic.h \
- ../src/H5Rpublic.h \
- ../src/H5RApublic.h \
- ../src/H5Spublic.h \
- ../src/H5Tpublic.h \
- ../src/H5private.h \
- ../src/H5Tpkg.h \
- ../src/H5HGprivate.h \
- ../src/H5Fprivate.h \
- ../src/H5Rprivate.h
extend.o: \
extend.c \
h5test.h \
@@ -883,3 +853,34 @@ enum.o: \
../src/H5HGprivate.h \
../src/H5Fprivate.h \
../src/H5Rprivate.h
+dtypes.o: \
+ dtypes.c \
+ h5test.h \
+ ../src/hdf5.h \
+ ../src/H5public.h \
+ ../src/H5config.h \
+ ../src/H5api_adpt.h \
+ ../src/H5Ipublic.h \
+ ../src/H5Apublic.h \
+ ../src/H5ACpublic.h \
+ ../src/H5Bpublic.h \
+ ../src/H5Dpublic.h \
+ ../src/H5Epublic.h \
+ ../src/H5Fpublic.h \
+ ../src/H5Gpublic.h \
+ ../src/H5HGpublic.h \
+ ../src/H5HLpublic.h \
+ ../src/H5MFpublic.h \
+ ../src/H5MMpublic.h \
+ ../src/H5Opublic.h \
+ ../src/H5Ppublic.h \
+ ../src/H5Zpublic.h \
+ ../src/H5Rpublic.h \
+ ../src/H5RApublic.h \
+ ../src/H5Spublic.h \
+ ../src/H5Tpublic.h \
+ ../src/H5private.h \
+ ../src/H5Tpkg.h \
+ ../src/H5HGprivate.h \
+ ../src/H5Fprivate.h \
+ ../src/H5Rprivate.h
diff --git a/test/dtypes.c b/test/dtypes.c
index 108fcb2..22ebe2a 100644
--- a/test/dtypes.c
+++ b/test/dtypes.c
@@ -549,6 +549,8 @@ test_named (hid_t fapl)
hid_t file=-1, type=-1, space=-1, dset=-1, t2=-1, attr1=-1;
herr_t status;
static hsize_t ds_size[2] = {10, 20};
+ hsize_t i;
+ unsigned attr_data[10][20];
char filename[1024];
TESTING("named data types");
@@ -600,8 +602,10 @@ test_named (hid_t fapl)
}
/* It should be possible to define an attribute for the named type */
- if ((attr1=H5Acreate (type, "attr1", H5T_NATIVE_INT, space,
+ if ((attr1=H5Acreate (type, "attr1", H5T_NATIVE_UCHAR, space,
H5P_DEFAULT))<0) goto error;
+ for (i=0; i<ds_size[0]*ds_size[1]; i++) attr_data[0][i] = i;/*tricky*/
+ if (H5Awrite(attr1, H5T_NATIVE_UINT, attr_data)<0) goto error;
if (H5Aclose (attr1)<0) goto error;
/*
diff --git a/tools/h5ls.c b/tools/h5ls.c
index 918712c..9a386f0 100644
--- a/tools/h5ls.c
+++ b/tools/h5ls.c
@@ -10,7 +10,7 @@
/*
* We include the private header file so we can get to the uniform
* programming environment it declares. Other than that, h5ls only calls
- * HDF5 API functions.
+ * HDF5 API functions (except for H5G_basename())
*/
#include <H5private.h>
#include <h5tools.h>
@@ -21,6 +21,23 @@ static int width_g = 80; /*output width in characters */
static hbool_t dump_g = FALSE; /*display dataset values? */
static hbool_t label_g = FALSE; /*label compound values? */
static hbool_t string_g = FALSE; /*print 1-byte numbers as ASCII? */
+static hbool_t fullname_g = FALSE; /*print full path names */
+static hbool_t recursive_g = FALSE; /*recursive descent listing */
+
+/* Info to pass to the iteration functions */
+typedef struct iter_t {
+ const char *container; /*full name of the container object */
+} iter_t;
+
+/* Table containing object id and object name */
+static struct {
+ int nalloc; /*number of slots allocated */
+ int nobjs; /*number of objects */
+ struct {
+ unsigned long id[2]; /*object number */
+ char *name; /*full object name */
+ } *obj;
+} idtab_g;
/* Information about how to display each type of object */
static struct dispatch_t {
@@ -28,7 +45,7 @@ static struct dispatch_t {
hid_t (*open)(hid_t loc, const char *name);
herr_t (*close)(hid_t obj);
herr_t (*list1)(hid_t obj);
- herr_t (*list2)(hid_t obj);
+ herr_t (*list2)(hid_t obj, const char *name);
} dispatch_g[H5G_NTYPES];
#define DISPATCH(TYPE,NAME,OPEN,CLOSE,LIST1,LIST2) { \
@@ -41,6 +58,7 @@ static struct dispatch_t {
static herr_t list (hid_t group, const char *name, void *cd);
static void display_type(hid_t type, int indent);
+static char *fix_name(const char *path, const char *base);
/*-------------------------------------------------------------------------
@@ -65,7 +83,9 @@ usage: %s [OPTIONS] FILE [OBJECTS...]\n\
OPTIONS\n\
-h, -?, --help Print a usage message and exit\n\
-d, --dump Print the values of datasets\n\
+ -f, --full Print full path names instead of base names\n\
-l, --label Label members of compound datasets\n\
+ -r, --recursive List all groups recursively, avoiding cycles\n\
-s, --string Print 1-byte integer datasets as ASCII\n\
-wN, --width=N Set the number of columns of output\n\
-v, --verbose Generate more verbose output\n\
@@ -83,9 +103,84 @@ usage: %s [OPTIONS] FILE [OBJECTS...]\n\
/*-------------------------------------------------------------------------
+ * Function: sym_insert
+ *
+ * Purpose: Add a symbol to the table.
+ *
+ * Return: void
+ *
+ * Programmer: Robb Matzke
+ * Thursday, January 21, 1999
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+sym_insert(H5G_stat_t *sb, const char *name)
+{
+ int n;
+
+ /*
+ * Don't add it if the link count is 1 because such an object can only
+ * have one name.
+ */
+ if (sb->nlink<2) return;
+
+ /* Extend the table */
+ if (idtab_g.nobjs>=idtab_g.nalloc) {
+ idtab_g.nalloc = MAX(256, 2*idtab_g.nalloc);
+ idtab_g.obj = realloc(idtab_g.obj,
+ idtab_g.nalloc*sizeof(idtab_g.obj[0]));
+ }
+
+ /* Insert the entry */
+ n = idtab_g.nobjs++;
+ idtab_g.obj[n].id[0] = sb->objno[0];
+ idtab_g.obj[n].id[1] = sb->objno[1];
+ idtab_g.obj[n].name = malloc(strlen(name)+1);
+ strcpy(idtab_g.obj[n].name, name);
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: sym_lookup
+ *
+ * Purpose: Find another name for the specified object.
+ *
+ * Return: Success: Ptr to another name.
+ *
+ * Failure: NULL
+ *
+ * Programmer: Robb Matzke
+ * Thursday, January 21, 1999
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static char *
+sym_lookup(H5G_stat_t *sb)
+{
+ int n;
+
+ if (sb->nlink<2) return NULL; /*only one name possible*/
+ for (n=0; n<idtab_g.nobjs; n++) {
+ if (idtab_g.obj[n].id[0]==sb->objno[0] &&
+ idtab_g.obj[n].id[1]==sb->objno[1]) {
+ return idtab_g.obj[n].name;
+ }
+ }
+ return NULL;
+}
+
+
+/*-------------------------------------------------------------------------
* Function: display_string
*
- * Purpose: Print a string value by escaping unusual characters.
+ * Purpose: Print a string value by escaping unusual characters. If
+ * STREAM is null then we only count how large the output would
+ * be.
*
* Return: Number of characters printed.
*
@@ -97,46 +192,57 @@ usage: %s [OPTIONS] FILE [OBJECTS...]\n\
*-------------------------------------------------------------------------
*/
static int
-display_string(const char *s)
+display_string(FILE *stream, const char *s, hbool_t escape_spaces)
{
int nprint=0;
for (/*void*/; s && *s; s++) {
switch (*s) {
case '"':
- printf("\\\"");
+ if (stream) fprintf(stream, "\\\"");
nprint += 2;
break;
case '\\':
- printf("\\\\");
+ if (stream) fprintf(stream, "\\\\");
nprint += 2;
break;
case '\b':
- printf("\\b");
+ if (stream) fprintf(stream, "\\b");
nprint += 2;
break;
case '\f':
- printf("\\f");
+ if (stream) fprintf(stream, "\\f");
nprint += 2;
break;
case '\n':
- printf("\\n");
+ if (stream) fprintf(stream, "\\n");
nprint += 2;
break;
case '\r':
- printf("\\r");
+ if (stream) fprintf(stream, "\\r");
nprint += 2;
break;
case '\t':
- printf("\\t");
+ if (stream) fprintf(stream, "\\t");
nprint += 2;
break;
+ case ' ':
+ if (escape_spaces) {
+ if (stream) fprintf(stream, "\\ ");
+ nprint += 2;
+ } else {
+ if (stream) fprintf(stream, " ");
+ nprint++;
+ }
+ break;
default:
if (isprint(*s)) {
- putchar(*s);
+ if (stream) putc(*s, stream);
nprint++;
} else {
- printf("\\%03o", *((const unsigned char*)s));
+ if (stream) {
+ fprintf(stream, "\\%03o", *((const unsigned char*)s));
+ }
nprint += 4;
}
break;
@@ -548,7 +654,7 @@ display_cmpd_type(hid_t type, int indent)
/* Name and offset */
name = H5Tget_member_name(type, i);
printf("\n%*s\"", indent+4, "");
- n = display_string(name);
+ n = display_string(stdout, name, FALSE);
printf("\"%*s +%-4lu ", MAX(0, 16-n), "",
(unsigned long)H5Tget_member_offset(type, i));
free(name);
@@ -655,7 +761,7 @@ display_enum_type(hid_t type, int indent)
/* Print members */
for (i=0; i<nmembs; i++) {
printf("\n%*s", indent+4, "");
- nchars = display_string(name[i]);
+ nchars = display_string(stdout, name[i], TRUE);
printf("%*s = ", MAX(0, 16-nchars), "");
if (native<0) {
@@ -685,7 +791,7 @@ display_enum_type(hid_t type, int indent)
/*-------------------------------------------------------------------------
- * Function: display_string
+ * Function: display_string_type
*
* Purpose: Print information about a string data type.
*
@@ -895,7 +1001,7 @@ dump_dataset_values(hid_t dset)
* Print all the values.
*/
printf(" Data:\n");
- if (h5dump(stdout, &info, dset, -1)<0) {
+ if (h5dump_dset(stdout, &info, dset, -1)<0) {
printf(" Unable to print data.\n");
}
@@ -922,24 +1028,65 @@ dump_dataset_values(hid_t dset)
static herr_t
list_attr (hid_t obj, const char *attr_name, void __unused__ *op_data)
{
- hid_t attr;
- int i;
-
- printf(" %-10s %-10s", "Attribute:", attr_name);
- if ((attr = H5Aopen_name (obj, attr_name))) {
- hid_t space = H5Aget_space (attr);
- hsize_t size[64];
- int ndims = H5Sget_simple_extent_dims (space, size, NULL);
- H5Sclose (space);
- printf (" {");
+ hid_t attr, space, type, p_type;
+ hsize_t size[64], nelmts=1;
+ int ndims, i, n;
+ size_t need;
+ void *buf;
+ h5dump_t info;
+
+ printf(" Attribute: ");
+ n = display_string(stdout, attr_name, TRUE);
+ printf("%*s", MAX(0, 10-n), "");
+ if ((attr = H5Aopen_name(obj, attr_name))) {
+ space = H5Aget_space(attr);
+ type = H5Aget_type(attr);
+
+ /* Data space */
+ ndims = H5Sget_simple_extent_dims(space, size, NULL);
+ printf(" {");
for (i=0; i<ndims; i++) {
- HDfprintf (stdout, "%s%Hu", i?", ":"", size[i]);
+ HDfprintf(stdout, "%s%Hu", i?", ":"", size[i]);
+ nelmts *= size[i];
+ }
+ puts("}");
+
+ /* Data type */
+ printf(" Type: ");
+ display_type(type, 15);
+ putchar('\n');
+
+ /* Data */
+ memset(&info, 0, sizeof info);
+ info.idx_fmt = " (%s) ";
+ info.line_ncols = width_g;
+ if (label_g) info.cmpd_name = "%s=";
+ if (string_g && 1==H5Tget_size(type) &&
+ H5T_INTEGER==H5Tget_class(type)) {
+ info.ascii = TRUE;
+ info.elmt_suf1 = "";
+ info.elmt_suf2 = "";
+ info.idx_fmt = " (%s) \"";
+ info.line_suf = "\"";
+ }
+ if ((p_type=h5dump_fixtype(type))>=0) {
+ need = nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type));
+ buf = malloc(need);
+ assert(buf);
+ if (H5Aread(attr, p_type, buf)>=0) {
+ h5dump_mem(stdout, &info, p_type, space, buf);
+ }
+ free(buf);
+ H5Tclose(p_type);
}
- putchar ('}');
- H5Aclose (attr);
+
+ H5Sclose(space);
+ H5Tclose(type);
+ H5Aclose(attr);
+ } else {
+ putchar('\n');
}
- putchar ('\n');
return 0;
}
@@ -1013,7 +1160,7 @@ dataset_list1(hid_t dset)
*-------------------------------------------------------------------------
*/
static herr_t
-dataset_list2(hid_t dset)
+dataset_list2(hid_t dset, const char __unused__ *name)
{
hid_t dcpl; /*dataset creation property list*/
hid_t type; /*data type of dataset */
@@ -1031,6 +1178,7 @@ dataset_list2(hid_t dset)
hsize_t total; /*total size or offset */
hsize_t chsize[64]; /*chunk size in elements */
int ndims; /*dimensionality */
+ int n, max_len; /*max extern file name length */
int i;
if (verbose_g>0) {
@@ -1052,8 +1200,19 @@ dataset_list2(hid_t dset)
/* Print information about external strorage */
if ((nf = H5Pget_external_count(dcpl))>0) {
- printf(" %-10s %d external file%s (num/addr/offset/length)\n",
+ for (i=0, max_len=0; i<nf; i++) {
+ H5Pget_external(dcpl, i, sizeof(f_name), f_name, NULL, NULL);
+ n = display_string(NULL, f_name, TRUE);
+ max_len = MAX(max_len, n);
+ }
+ printf(" %-10s %d external file%s\n",
"Extern:", nf, 1==nf?"":"s");
+ printf(" %4s %10s %10s %10s %s\n",
+ "ID", "DSet-Addr", "File-Addr", "Bytes", "File");
+ printf(" %4s %10s %10s %10s ",
+ "----", "----------", "----------", "----------");
+ for (i=0; i<max_len; i++) putchar('-');
+ putchar('\n');
for (i=0, total=0; i<nf; i++) {
if (H5Pget_external(dcpl, i, sizeof(f_name), f_name, &f_offset,
&f_size)<0) {
@@ -1062,17 +1221,21 @@ dataset_list2(hid_t dset)
i, total, "", "",
i+1<nf?"Following addresses are incorrect":"");
} else if (H5S_UNLIMITED==f_size) {
- HDfprintf(stdout, " #%03d %10Hu %10Hu %10s \"",
+ HDfprintf(stdout, " #%03d %10Hu %10Hu %10s ",
i, total, (hsize_t)f_offset, "INF");
- display_string(f_name);
+ display_string(stdout, f_name, TRUE);
} else {
- HDfprintf(stdout, " #%03d %10Hu %10Hu %10Hu \"",
+ HDfprintf(stdout, " #%03d %10Hu %10Hu %10Hu ",
i, total, (hsize_t)f_offset, f_size);
- display_string(f_name);
+ display_string(stdout, f_name, TRUE);
}
- printf("\"\n");
+ putchar('\n');
total += f_size;
}
+ printf(" %4s %10s %10s %10s ",
+ "----", "----------", "----------", "----------");
+ for (i=0; i<max_len; i++) putchar('-');
+ putchar('\n');
}
/* Print information about raw data filters */
@@ -1111,6 +1274,36 @@ dataset_list2(hid_t dset)
/*-------------------------------------------------------------------------
+ * Function: group_list2
+ *
+ * Purpose: List information about a group which should appear after
+ * information which is general to all objects.
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Robb Matzke
+ * Thursday, January 21, 1999
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+group_list2(hid_t grp, const char *name)
+{
+ iter_t iter;
+
+ if (recursive_g) {
+ iter.container = name;
+ H5Giterate(grp, ".", NULL, list, &iter);
+ }
+ return 0;
+}
+
+
+/*-------------------------------------------------------------------------
* Function: datatype_list2
*
* Purpose: List information about a data type which should appear after
@@ -1128,7 +1321,7 @@ dataset_list2(hid_t dset)
*-------------------------------------------------------------------------
*/
static herr_t
-datatype_list2(hid_t type)
+datatype_list2(hid_t type, const char __unused__ *name)
{
printf(" %-10s ", "Type:");
display_type(type, 15);
@@ -1155,7 +1348,7 @@ datatype_list2(hid_t type)
*-------------------------------------------------------------------------
*/
static herr_t
-ragged_list2(hid_t __unused__ ra)
+ragged_list2(hid_t __unused__ ra, const char __unused__ *name)
{
if (dump_g) {
puts(" Data: Not implemented yet (see values of member");
@@ -1215,17 +1408,26 @@ link_open(hid_t location, const char *name)
*-------------------------------------------------------------------------
*/
static herr_t
-list (hid_t group, const char *name, void __unused__ *cd)
+list (hid_t group, const char *name, void *_iter)
{
- hid_t obj;
- char buf[512], comment[50];
+ hid_t obj=-1;
+ char buf[512], comment[50], *fullname=NULL, *s=NULL;
H5G_stat_t sb;
struct tm *tm;
herr_t status;
+ iter_t *iter = (iter_t*)_iter;
+ int n;
- /* Print the object name */
- printf("%-25s ", name);
-
+ /* Print the object name, either full name or base name */
+ fullname = fix_name(iter->container, name);
+ if (fullname_g) {
+ n = display_string(stdout, fullname, TRUE);
+ printf("%*s", MAX(0, 25-n), "");
+ } else {
+ n = display_string(stdout, name, TRUE);
+ printf("%*s", MAX(0, 25-n), "");
+ }
+
/* Get object information */
H5E_BEGIN_TRY {
status = H5Gget_objinfo(group, name, FALSE, &sb);
@@ -1242,13 +1444,29 @@ list (hid_t group, const char *name, void __unused__ *cd)
}
/*
+ * If the object has already been printed then just show the object ID
+ * and return.
+ */
+ if ((s=sym_lookup(&sb))) {
+ printf(", same as ");
+ display_string(stdout, s, TRUE);
+ printf("\n");
+ goto done;
+ } else {
+ sym_insert(&sb, fullname);
+ }
+
+ /*
* Open the object. Not all objects can be opened. If this is the case
* then return right away.
*/
if (sb.type>=0 &&
(NULL==dispatch_g[sb.type].open ||
- (obj=(dispatch_g[sb.type].open)(group, name))<0)) return 0;
-
+ (obj=(dispatch_g[sb.type].open)(group, name))<0)) {
+ printf(" *ERROR*\n");
+ goto done;
+ }
+
/*
* List the first line of information for the object.
*/
@@ -1273,21 +1491,76 @@ list (hid_t group, const char *name, void __unused__ *cd)
comment[0] = '\0';
H5Gget_comment(group, name, sizeof(comment), comment);
strcpy(comment+sizeof(comment)-4, "...");
- if (comment[0]) printf(" %-10s %s\n", "Comment:", comment);
+ if (comment[0]) {
+ printf(" %-10s \"", "Comment:");
+ display_string(stdout, comment, FALSE);
+ puts("\"");
+ }
}
if (sb.type>0 && dispatch_g[sb.type].list2) {
- (dispatch_g[sb.type].list2)(obj);
+ (dispatch_g[sb.type].list2)(obj, fullname);
}
/*
* Close the object.
*/
- if (sb.type>0) (dispatch_g[sb.type].close)(obj);
+ done:
+ if (sb.type>0 && obj>=0) (dispatch_g[sb.type].close)(obj);
+ if (fullname) free(fullname);
return 0;
}
/*-------------------------------------------------------------------------
+ * Function: fix_name
+ *
+ * Purpose: Returns a malloc'd buffer that contains the PATH and BASE
+ * names separated by a single slash. It also removes duplicate
+ * and trailing slashes and insures that the name begins with a
+ * slash.
+ *
+ * Return: Success: Ptr to fixed name from malloc()
+ *
+ * Failure: NULL
+ *
+ * Programmer: Robb Matzke
+ * Thursday, January 21, 1999
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static char *
+fix_name(const char *path, const char *base)
+{
+ size_t n = (path?strlen(path):0) + (base?strlen(base):0) + 3;
+ char *s = malloc(n), prev='\0';
+ int len=0;
+
+ if (path) {
+ /* Slash, followed by path, followed by slash */
+ if ('/'!=*path) prev = s[len++] = '/';
+ for (/*void*/; *path; path++) {
+ if ('/'!=*path || '/'!=prev) prev = s[len++] = *path;
+ }
+ if ('/'!=prev) prev = s[len++] = '/';
+ }
+
+ if (base) {
+ /* Base name w/o trailing slashes */
+ const char *end = base + strlen(base);
+ while (end>base && '/'==end[-1]) --end;
+ for (/*void*/; base<end; base++) {
+ if ('/'!=*base || '/'!=prev) prev = s[len++] = *base;
+ }
+ }
+
+ s[len] = '\0';
+ return s;
+}
+
+
+/*-------------------------------------------------------------------------
* Function: get_width
*
* Purpose: Figure out how wide the screen is. This is highly
@@ -1395,14 +1668,15 @@ main (int argc, char *argv[])
const char *fname = NULL;
const char *progname;
const char *s;
- char *rest;
+ char *rest, *container=NULL;
int argno;
H5G_stat_t sb;
+ iter_t iter;
DISPATCH(H5G_DATASET, "Dataset", H5Dopen, H5Dclose,
dataset_list1, dataset_list2);
DISPATCH(H5G_GROUP, "Group", H5Gopen, H5Gclose,
- NULL, NULL);
+ NULL, group_list2);
DISPATCH(H5G_TYPE, "Type", H5Topen, H5Tclose,
NULL, datatype_list2);
DISPATCH(H5G_LINK, "-> ", link_open, NULL,
@@ -1411,7 +1685,7 @@ main (int argc, char *argv[])
NULL, ragged_list2);
/* Name of this program without the path */
- if ((progname=strrchr (argv[0], '/'))) progname++;
+ if ((progname=strrchr(argv[0], '/'))) progname++;
else progname = argv[0];
/* Default output width */
@@ -1428,8 +1702,13 @@ main (int argc, char *argv[])
exit(0);
} else if (!strcmp(argv[argno], "--dump")) {
dump_g = TRUE;
+ } else if (!strcmp(argv[argno], "--full")) {
+ fullname_g = TRUE;
} else if (!strcmp(argv[argno], "--label")) {
label_g = TRUE;
+ } else if (!strcmp(argv[argno], "--recursive")) {
+ recursive_g = TRUE;
+ fullname_g = TRUE;
} else if (!strcmp(argv[argno], "--string")) {
string_g = TRUE;
} else if (!strncmp(argv[argno], "--width=", 8)) {
@@ -1469,9 +1748,16 @@ main (int argc, char *argv[])
case 'd': /* --dump */
dump_g++;
break;
+ case 'f': /* --full */
+ fullname_g = TRUE;
+ break;
case 'l': /* --label */
label_g = TRUE;
break;
+ case 'r': /* --recursive */
+ recursive_g = TRUE;
+ fullname_g = TRUE;
+ break;
case 's': /* --string */
string_g = TRUE;
break;
@@ -1504,27 +1790,42 @@ main (int argc, char *argv[])
usage(progname);
exit(1);
}
- if (strchr (fname, '%')) {
- plist = H5Pcreate (H5P_FILE_ACCESS);
- H5Pset_family (plist, 0, H5P_DEFAULT);
+ if (strchr(fname, '%')) {
+ plist = H5Pcreate(H5P_FILE_ACCESS);
+ H5Pset_family(plist, 0, H5P_DEFAULT);
}
- if ((file = H5Fopen (fname, H5F_ACC_RDONLY, plist))<0) exit (1);
+ if ((file = H5Fopen(fname, H5F_ACC_RDONLY, plist))<0) exit (1);
/*
* The remaining optional arguments are the names of the objects to list.
* If there are no arguments then list `/'.
*/
if (argno>=argc) {
- H5Giterate(file, "/", NULL, list, NULL);
+ iter.container = "/";
+ H5Giterate(file, "/", NULL, list, &iter);
} else {
for (/*void*/; argno<argc; argno++) {
if (H5Gget_objinfo(file, argv[argno], TRUE, &sb)>=0 &&
+ /*
+ * Specified name is a group. List the complete contents of
+ * the group.
+ */
H5G_GROUP==sb.type) {
- H5Giterate(file, argv[argno], NULL, list, NULL);
+ iter.container = container = fix_name("", argv[argno]);
+ H5Giterate(file, argv[argno], NULL, list, &iter);
+ free(container);
+
} else if ((root=H5Gopen(file, "/"))<0) {
- exit(1);
+ exit(1); /*major problem!*/
+
} else {
- list(root, argv[argno], NULL);
+ /*
+ * Specified name is a non-group object -- list that object.
+ * The container for the object is everything up to the base
+ * name.
+ */
+ iter.container = "/";
+ list(root, argv[argno], &iter);
if (H5Gclose(root)<0) exit(1);
}
}
diff --git a/tools/h5tools.c b/tools/h5tools.c
index c1f889c..d69a280 100644
--- a/tools/h5tools.c
+++ b/tools/h5tools.c
@@ -331,10 +331,10 @@ h5dump_sprint(char *s/*out*/, const h5dump_t *info, hid_t type, void *vp)
/*-------------------------------------------------------------------------
- * Function: h5dump_simple
+ * Function: h5dump_simple_dset
*
* Purpose: Print some values from a dataset with a simple data space.
- * This is a special case of h5dump().
+ * This is a special case of h5dump_dset().
*
* Return: Success: 0
*
@@ -348,7 +348,8 @@ h5dump_sprint(char *s/*out*/, const h5dump_t *info, hid_t type, void *vp)
*-------------------------------------------------------------------------
*/
static int
-h5dump_simple(FILE *stream, const h5dump_t *info, hid_t dset, hid_t p_type)
+h5dump_simple_dset(FILE *stream, const h5dump_t *info, hid_t dset,
+ hid_t p_type)
{
hid_t f_space; /*file data space */
int ndims; /*dimensionality */
@@ -499,6 +500,104 @@ h5dump_simple(FILE *stream, const h5dump_t *info, hid_t dset, hid_t p_type)
/*-------------------------------------------------------------------------
+ * Function: h5dump_simple_mem
+ *
+ * Purpose: Print some values from memory with a simple data space.
+ * This is a special case of h5dump_mem().
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Robb Matzke
+ * Thursday, July 23, 1998
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+h5dump_simple_mem(FILE *stream, const h5dump_t *info, hid_t type,
+ hid_t space, void *_mem)
+{
+ unsigned char *mem = (unsigned char*)_mem;
+ int ndims; /*dimensionality */
+ hsize_t i; /*counters */
+ int need_prefix=1; /*indices need printing */
+
+ /* Print info */
+ hsize_t p_min_idx[H5S_MAX_RANK];/*min selected index */
+ hsize_t p_max_idx[H5S_MAX_RANK];/*max selected index */
+ size_t p_type_nbytes; /*size of memory type */
+ hsize_t p_nelmts; /*total selected elmts */
+ char p_buf[8192]; /*output string */
+ size_t p_column=0; /*output column */
+ size_t p_ncolumns=80; /*default num columns */
+ char p_prefix[1024]; /*line prefix string */
+
+ /*
+ * Check that everything looks okay. The dimensionality must not be too
+ * great and the dimensionality of the items selected for printing must
+ * match the dimensionality of the dataset.
+ */
+ ndims = H5Sget_simple_extent_ndims(space);
+ if ((size_t)ndims>NELMTS(p_min_idx)) return -1;
+
+ /* Assume entire data space to be printed */
+ for (i=0; i<(hsize_t)ndims; i++) p_min_idx[i] = 0;
+ H5Sget_simple_extent_dims(space, p_max_idx, NULL);
+ for (i=0, p_nelmts=1; i<(hsize_t)ndims; i++) {
+ p_nelmts *= p_max_idx[i]-p_min_idx[i];
+ }
+ if (0==p_nelmts) return 0; /*nothing to print*/
+ p_type_nbytes = H5Tget_size(type);
+
+ /* Local things */
+ if (info->line_ncols>0) p_ncolumns = info->line_ncols;
+
+ for (i=0; i<p_nelmts; i++) {
+ /* Render the element */
+ h5dump_sprint(p_buf, info, type, mem+i*p_type_nbytes);
+ if (i+1<p_nelmts) {
+ strcat(p_buf, OPT(info->elmt_suf1, ","));
+ }
+
+ /* Print the prefix */
+ if ((p_column +
+ strlen(p_buf) +
+ strlen(OPT(info->elmt_suf2, " ")) +
+ strlen(OPT(info->line_suf, ""))) > p_ncolumns) {
+ need_prefix = 1;
+ }
+ if (need_prefix) {
+ h5dump_prefix(p_prefix, info, i, ndims, p_min_idx, p_max_idx);
+ if (p_column) {
+ fputs(OPT(info->line_suf, ""), stream);
+ putc('\n', stream);
+ fputs(OPT(info->line_sep, ""), stream);
+ }
+ fputs(p_prefix, stream);
+ p_column = strlen(p_prefix);
+ need_prefix = 0;
+ } else {
+ fputs(OPT(info->elmt_suf2, " "), stream);
+ p_column += strlen(OPT(info->elmt_suf2, " "));
+ }
+
+ fputs(p_buf, stream);
+ p_column += strlen(p_buf);
+ }
+
+ if (p_column) {
+ fputs(OPT(info->line_suf, ""), stream);
+ putc('\n', stream);
+ fputs(OPT(info->line_sep, ""), stream);
+ }
+ return 0;
+}
+
+
+/*-------------------------------------------------------------------------
* Function: h5dump_fixtype
*
* Purpose: Given a file data type choose a memory data type which is
@@ -515,7 +614,7 @@ h5dump_simple(FILE *stream, const h5dump_t *info, hid_t dset, hid_t p_type)
*
*-------------------------------------------------------------------------
*/
-static hid_t
+hid_t
h5dump_fixtype(hid_t f_type)
{
hid_t m_type=-1, f_memb;
@@ -652,7 +751,7 @@ h5dump_fixtype(hid_t f_type)
/*-------------------------------------------------------------------------
- * Function: h5dump
+ * Function: h5dump_dset
*
* Purpose: Print some values from a dataset DSET to the file STREAM
* after converting all types to P_TYPE (which should be a
@@ -671,7 +770,7 @@ h5dump_fixtype(hid_t f_type)
*-------------------------------------------------------------------------
*/
int
-h5dump(FILE *stream, const h5dump_t *info, hid_t dset, hid_t _p_type)
+h5dump_dset(FILE *stream, const h5dump_t *info, hid_t dset, hid_t _p_type)
{
hid_t f_space;
hid_t p_type = _p_type;
@@ -698,7 +797,44 @@ h5dump(FILE *stream, const h5dump_t *info, hid_t dset, hid_t _p_type)
H5Sclose(f_space);
/* Print the data */
- status = h5dump_simple(stream, info, dset, p_type);
+ status = h5dump_simple_dset(stream, info, dset, p_type);
if (p_type!=_p_type) H5Tclose(p_type);
return status;
}
+
+
+/*-------------------------------------------------------------------------
+ * Function: h5dump_mem
+ *
+ * Purpose: Displays the data contained in MEM. MEM must have the
+ * specified data TYPE and SPACE. Currently only simple data
+ * spaces are allowed and only the `all' selection.
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Robb Matzke
+ * Wednesday, January 20, 1999
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+int
+h5dump_mem(FILE *stream, const h5dump_t *info, hid_t type, hid_t space,
+ void *mem)
+{
+ h5dump_t info_dflt;
+
+ /* Use default values */
+ if (!stream) stream = stdout;
+ if (!info) {
+ memset(&info_dflt, 0, sizeof info_dflt);
+ info = &info_dflt;
+ }
+
+ /* Check the data space */
+ if (H5Sis_simple(space)<=0) return -1;
+ return h5dump_simple_mem(stream, info, type, space, mem);
+}
diff --git a/tools/h5tools.h b/tools/h5tools.h
index 54017aa..8b5cbfe 100644
--- a/tools/h5tools.h
+++ b/tools/h5tools.h
@@ -122,6 +122,9 @@ typedef struct h5dump_t {
} h5dump_t;
-int h5dump(FILE *stream, const h5dump_t *info, hid_t dset, hid_t p_type);
+hid_t h5dump_fixtype(hid_t f_type);
+int h5dump_dset(FILE *stream, const h5dump_t *info, hid_t dset, hid_t p_type);
+int h5dump_mem(FILE *stream, const h5dump_t *info, hid_t type, hid_t space,
+ void *mem);
#endif
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