diff options
| -rw-r--r-- | README.txt | 2 | ||||
| -rwxr-xr-x | c++/configure | 18 | ||||
| -rw-r--r-- | c++/configure.in | 2 | ||||
| -rwxr-xr-x | configure | 18 | ||||
| -rw-r--r-- | configure.in | 2 | ||||
| -rwxr-xr-x | fortran/configure | 18 | ||||
| -rw-r--r-- | fortran/configure.in | 2 | ||||
| -rw-r--r-- | release_docs/HISTORY.txt | 460 | ||||
| -rw-r--r-- | release_docs/RELEASE.txt | 63 | ||||
| -rw-r--r-- | src/H5public.h | 4 |
10 files changed, 508 insertions, 81 deletions
@@ -1,4 +1,4 @@ -HDF5 version 1.6.9 released on Fri May 1 15:26:44 CDT 2009 +HDF5 version 1.6.9-post0 currently under development ==> README.txt <== Periodic code snapshots are provided at the following URL: diff --git a/c++/configure b/c++/configure index efaef7f..61d08ef 100755 --- a/c++/configure +++ b/c++/configure @@ -1,7 +1,7 @@ #! /bin/sh # From c++/configure.in Id: configure.in 16900 2009-04-30 22:04:36Z acheng . # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.61 for HDF5 C++ 1.6.9. +# Generated by GNU Autoconf 2.61 for HDF5 C++ 1.6.9-post0. # # Report bugs to <help@hdfgroup.org>. # @@ -734,8 +734,8 @@ SHELL=${CONFIG_SHELL-/bin/sh} # Identity of this package. PACKAGE_NAME='HDF5 C++' PACKAGE_TARNAME='hdf5-c--' -PACKAGE_VERSION='1.6.9' -PACKAGE_STRING='HDF5 C++ 1.6.9' +PACKAGE_VERSION='1.6.9-post0' +PACKAGE_STRING='HDF5 C++ 1.6.9-post0' PACKAGE_BUGREPORT='help@hdfgroup.org' ac_unique_file="src/H5Library.cpp" @@ -1375,7 +1375,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 C++ 1.6.9 to adapt to many kinds of systems. +\`configure' configures HDF5 C++ 1.6.9-post0 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1440,7 +1440,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 C++ 1.6.9:";; + short | recursive ) echo "Configuration of HDF5 C++ 1.6.9-post0:";; esac cat <<\_ACEOF @@ -1545,7 +1545,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 C++ configure 1.6.9 +HDF5 C++ configure 1.6.9-post0 generated by GNU Autoconf 2.61 Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, @@ -1559,7 +1559,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 C++ $as_me 1.6.9, which was +It was created by HDF5 C++ $as_me 1.6.9-post0, which was generated by GNU Autoconf 2.61. Invocation command line was $ $0 $@ @@ -11427,7 +11427,7 @@ exec 6>&1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 C++ $as_me 1.6.9, which was +This file was extended by HDF5 C++ $as_me 1.6.9-post0, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -11480,7 +11480,7 @@ Report bugs to <bug-autoconf@gnu.org>." _ACEOF cat >>$CONFIG_STATUS <<_ACEOF ac_cs_version="\\ -HDF5 C++ config.status 1.6.9 +HDF5 C++ config.status 1.6.9-post0 configured by $0, generated by GNU Autoconf 2.61, with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\" diff --git a/c++/configure.in b/c++/configure.in index 1d135be..94dcbc3 100644 --- a/c++/configure.in +++ b/c++/configure.in @@ -28,7 +28,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5 C++], [1.6.9], [help@hdfgroup.org]) +AC_INIT([HDF5 C++], [1.6.9-post0], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/H5Library.cpp]) AC_CONFIG_HEADER([src/H5cxx_config.h]) @@ -1,7 +1,7 @@ #! /bin/sh # From configure.in Id: configure.in 16900 2009-04-30 22:04:36Z acheng . # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.61 for HDF5 1.6.9. +# Generated by GNU Autoconf 2.61 for HDF5 1.6.9-post0. # # Report bugs to <help@hdfgroup.org>. # @@ -734,8 +734,8 @@ SHELL=${CONFIG_SHELL-/bin/sh} # Identity of this package. PACKAGE_NAME='HDF5' PACKAGE_TARNAME='hdf5' -PACKAGE_VERSION='1.6.9' -PACKAGE_STRING='HDF5 1.6.9' +PACKAGE_VERSION='1.6.9-post0' +PACKAGE_STRING='HDF5 1.6.9-post0' PACKAGE_BUGREPORT='help@hdfgroup.org' ac_unique_file="src/H5.c" @@ -1396,7 +1396,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 1.6.9 to adapt to many kinds of systems. +\`configure' configures HDF5 1.6.9-post0 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1461,7 +1461,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 1.6.9:";; + short | recursive ) echo "Configuration of HDF5 1.6.9-post0:";; esac cat <<\_ACEOF @@ -1608,7 +1608,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 configure 1.6.9 +HDF5 configure 1.6.9-post0 generated by GNU Autoconf 2.61 Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, @@ -1622,7 +1622,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 $as_me 1.6.9, which was +It was created by HDF5 $as_me 1.6.9-post0, which was generated by GNU Autoconf 2.61. Invocation command line was $ $0 $@ @@ -32791,7 +32791,7 @@ exec 6>&1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 $as_me 1.6.9, which was +This file was extended by HDF5 $as_me 1.6.9-post0, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -32844,7 +32844,7 @@ Report bugs to <bug-autoconf@gnu.org>." _ACEOF cat >>$CONFIG_STATUS <<_ACEOF ac_cs_version="\\ -HDF5 config.status 1.6.9 +HDF5 config.status 1.6.9-post0 configured by $0, generated by GNU Autoconf 2.61, with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\" diff --git a/configure.in b/configure.in index 1214eed..3a3d1be 100644 --- a/configure.in +++ b/configure.in @@ -25,7 +25,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5], [1.6.9], [help@hdfgroup.org]) +AC_INIT([HDF5], [1.6.9-post0], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/H5.c]) AC_CONFIG_HEADER([src/H5config.h]) diff --git a/fortran/configure b/fortran/configure index e863a31..be49ce6 100755 --- a/fortran/configure +++ b/fortran/configure @@ -1,7 +1,7 @@ #! /bin/sh # From fortran/configure.in Id: configure.in 16900 2009-04-30 22:04:36Z acheng . # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.61 for HDF5 Fortran 1.6.9. +# Generated by GNU Autoconf 2.61 for HDF5 Fortran 1.6.9-post0. # # Report bugs to <help@hdfgroup.org>. # @@ -734,8 +734,8 @@ SHELL=${CONFIG_SHELL-/bin/sh} # Identity of this package. PACKAGE_NAME='HDF5 Fortran' PACKAGE_TARNAME='hdf5-fortran' -PACKAGE_VERSION='1.6.9' -PACKAGE_STRING='HDF5 Fortran 1.6.9' +PACKAGE_VERSION='1.6.9-post0' +PACKAGE_STRING='HDF5 Fortran 1.6.9-post0' PACKAGE_BUGREPORT='help@hdfgroup.org' ac_unique_file="src/HDF5.f90" @@ -1395,7 +1395,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 Fortran 1.6.9 to adapt to many kinds of systems. +\`configure' configures HDF5 Fortran 1.6.9-post0 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1460,7 +1460,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 Fortran 1.6.9:";; + short | recursive ) echo "Configuration of HDF5 Fortran 1.6.9-post0:";; esac cat <<\_ACEOF @@ -1568,7 +1568,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 Fortran configure 1.6.9 +HDF5 Fortran configure 1.6.9-post0 generated by GNU Autoconf 2.61 Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, @@ -1582,7 +1582,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 Fortran $as_me 1.6.9, which was +It was created by HDF5 Fortran $as_me 1.6.9-post0, which was generated by GNU Autoconf 2.61. Invocation command line was $ $0 $@ @@ -12294,7 +12294,7 @@ exec 6>&1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 Fortran $as_me 1.6.9, which was +This file was extended by HDF5 Fortran $as_me 1.6.9-post0, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -12347,7 +12347,7 @@ Report bugs to <bug-autoconf@gnu.org>." _ACEOF cat >>$CONFIG_STATUS <<_ACEOF ac_cs_version="\\ -HDF5 Fortran config.status 1.6.9 +HDF5 Fortran config.status 1.6.9-post0 configured by $0, generated by GNU Autoconf 2.61, with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\" diff --git a/fortran/configure.in b/fortran/configure.in index 01acf0c..f35bfcc 100644 --- a/fortran/configure.in +++ b/fortran/configure.in @@ -25,7 +25,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5 Fortran], [1.6.9], [help@hdfgroup.org]) +AC_INIT([HDF5 Fortran], [1.6.9-post0], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/HDF5.f90]) AC_CONFIG_HEADER([src/H5config_fortran.h]) diff --git a/release_docs/HISTORY.txt b/release_docs/HISTORY.txt index 8fa6f3f..e7f34e0 100644 --- a/release_docs/HISTORY.txt +++ b/release_docs/HISTORY.txt @@ -4,6 +4,7 @@ This file contains history of the HDF5 libraries releases CONTENTS +23. Release Information for hdf5-1.6.9 22. Release Information for hdf5-1.6.8 21. Release Information for hdf5-1.6.7 20. Release Information for hdf5-1.6.6 @@ -31,6 +32,465 @@ CONTENTS [Search on the string '%%%%' for per-release section breaks.] +%%%%1.6.9%%%% Release Information for hdf5-1.6.8 (1/May/2009) + +HDF5 version 1.6.9 released on Fri May 1 15:26:44 CDT 2009 +================================================================================ + +INTRODUCTION +============ +This document describes the differences between HDF5-1.6.8 and +HDF5-1.6.9. +It contains information on the platforms tested and known problems in +HDF5-1.6.9. For more details, check the HISTORY.txt file in +the HDF5 source. + +HDF5 documentation can be found in the distributed release source code +in the subdirectory doc/html/ or on the THG (The HDF Group) FTP server: + + ftp://ftp.hdfgroup.org/HDF5/docs/ + +Documentation for the current release in the HDF5 Release 1.6.x series is +also on the HDF web site: + + http://hdfgroup.org/HDF5/doc1.6/ + +For more information, see the HDF5 home page: + + http://hdfgroup.org/products/hdf5/ + +If you have any questions or comments, please see the HDF Support page +for a list of available resources: + + http://hdfgroup.org/services/support.html + + +CONTENTS +======== +- New Features +- Support for New Platforms, Languages and Compilers +- Bug Fixes since HDF5-1.6.8 +- Documentation +- Platforms Tested +- Supported Configuration Features Summary +- Known Problems + + +New Features +============ + Configuration: + ------------------------- + - Added a Make target of check-all-install to test the correctness of + installing via the prefix= or $DESTDIR options. AKC - 2009/04/14 + + Library: + -------- + - None + + Parallel Library: + ----------------- + - Modified parallel tests to run with arbitrary number of processes. The + modified tests are testphdf5 (parallel dataset access, collective chunk + IO, irregular hyperslab selection with collective IO) and + t_chunk_alloc (chunk allocation). The rest of the parallel tests already + use in the code the number of processes available in the communicator. + CMC - 2009/04/28 + + Tools: + ------ + - h5diff new flag, -c, --compare, list objects that are not comparable. + PVN - 2009/4/10 - 1368 + - h5diff new flag, -N, --nan, avoids NaNs detection. PVN - 2009/4/10 + - h5dump correctly specifies XML dtd / schema urls ADB - 2009/4/3 - 1519 + - h5dump: binary output defaults to NATIVE with -b optionally accepting + the form of binary output (NATIVE, FILE, BE, LE). PVN - 2008/11/14 + - h5repack: When user doesn't specify a chunk size, h5repack now defines + a default chunk size as the same size of the size of the hyperslab + used to read the chunks. The size of the hyperslabs are defined as + the size of each dimension or a predefined constant, whatever is smaller. + This assures that the chunk read fits in the chunk cache. PVN - 2008/11/21 + + F90 API: + -------- + - None + + C++ API: + -------- + - None + + +Support for New Platforms, Languages and Compilers +================================================== + + +Bug Fixes since HDF5-1.6.8 Release +================================== + Library + ------- + - Added H5Z_class1_t macro, as H5Z_class_t is now versioned in 1.8. + NAF - 2009/04/20 - 1533 + - Fixed a bug that prevented more than one dataset chunk from being cached + at a time. NAF - 2009/02/12 + - H5Dset_extent: when shrinking dimensions, some chunks were not deleted. + Shrinking to a zero size dimension caused an assertion in the library. + PVN - 2009/01/8 + + Configuration + ------------- + - h5perf will now get installed during 'make install'. MAM - 2008/11/17 + + Performance + ----------- + + Tools + ----- + - h5dump, h5diff, h5repack were not reading (by hyperslabs) datasets + that have a datatype datum size greater than H5TOOLS_BUFSIZE, a constant + defined as 1024Kb, such as array types with large dimensions. + PVN - 2009/4/1 - 1501 + - h5import: By selecting a compression type, a big endian byte order was + being selected. PVN - 2009/3/11 - 1462 + - zip_perf.c had missing argument on one of the open() calls. Fixed. + AKC - 2008/12/9 + + F90 API + ------- + - None + + C++ API + ------- + - Revised Attribute::write and Attribute::read wrappers to handle + memory allocation/deallocation properly. (Bugzilla 1045) + BMR - 2009/4/19 + + +Documentation +============= + HDF5 documentation can be found in the distributed release source + code in the subdirectory doc/html/ (start with index.html) or on the + THG (The HDF Group) FTP server: + + ftp://ftp.hdfgroup.org/HDF5/docs/ + + Online documentation for the current release in the HDF5 Release 1.6.x + series can be found on the THG web site: + + http://hdfgroup.org/HDF5/doc1.6/ + + A listing of interface changes from release to release can be found + in the document "HDF5 Software Changes from Release to Release": + + http://hdfgroup.org/HDF5/doc1.6/ADGuide/Changes.html + + Since the stream I/O driver is not included in this release, the + functions H5Pset_fapl_stream and H5Pget_fapl_stream and the stream + ENUM value H5FD_STREAM have been removed from the documentation. + + +Platforms Tested +================ + AIX 5.3 xlc 7.0.0.8 + xlf 09.01.0000.0008 + xlC 7.0.0.8 + mpcc_r 7.0.0.8 + mpxlf_r 09.01.0000.0008 + + FreeBSD 6.3-STABLE i386 gcc 3.4.6 [FreeBSD] 20060305 + (duty) g++ 3.4.6 [FreeBSD] 20060305 + gcc 4.3.4 20090419 + g++ 4.3.4 20090419 + gfortran 4.3.4 20090419 + + FreeBSD 6.3-STABLE amd64 gcc 3.4.6 [FreeBSD] 20060305 + (liberty) g++ 3.4.6 [FreeBSD] 20060305 + gcc 4.4.1 20090421 + g++ 4.4.1 20090421 + gfortran 4.4.1 20090421 + + IRIX64 6.5 MIPSpro cc 7.4.4m + (ucar mop1 64 & n32) F90 MIPSpro 7.4.4m (64 only) + C++ MIPSpro cc 7.4.4m + + Linux 2.6.18-128.1.6.el5xen gcc (GCC) 4.1.2 + #1 SMP i686 i686 i386 G95 (GCC 4.0.3 (g95 0.92!) Feb 4 2009) + (jam) PGI C, Fortran, C++ 7.2-1 32-bit + PGI C, Fortran, C++ 8.0-1 32-bit + Intel(R) C Compiler for 32-bit + applications, Versions 10.1, 11.0 + Intel(R) C++ Compiler for 32-bit + applications, Version 10.1, 11.0 + Intel(R) Fortran Compiler for 32-bit + applications, Version 10.1, 11.0 + Absoft 32-bit Fortran 95 10.0.7 + MPICH mpich2-1.0.8 compiled with + gcc 4.1.2 and G95 (GCC 4.0.3 (g95 0.92!) + + Linux 2.6.9-42.0.10.ELsmp #1 gcc (GCC) 3.4.6 + SMP i686 i686 i386 G95 (GCC 4.0.3 (g95 0.92!) Feb 4 2009) + (kagiso) MPICH mpich2-1.0.8 compiled with + gcc 3.4.6 and G95 (GCC 4.0.3 (g95 0.92!) + + Linux 2.6.16.46-0.12-debug #1 Intel(R) C++ Version 10.0.025 + SMP ia64 GNU/Linux Intel(R) Fortran Itanium(R) Version 10.0.025 + (ucar hir1) + + Linux 2.6.16.60-0.37-smp #1 gcc 4.1.2 + SMP x86_64 GNU/Linux G95 (GCC 4.0.3 (g95 0.92!) Feb 4 2009) + (smirom) Intel(R) C, C++, Fortran Compilers for + applications running on Intel(R) 64, + Versions 10.1, 11.0. + PGI C, Fortran, C++ Version 7.2-1, 8.0-1 + for 64-bit target on x86-64 + gcc 4.1.2 and G95 (GCC 4.0.3 (g95 0.92!) + MPICH mpich2-1.0.8 compiled with + gcc 4.1.2 and G95 (GCC 4.0.3 (g95 0.92!) + tested for both 32- and 64-bit binaries + + Linux 2.6.16.54-0.2.5 #1 Intel(R) C++ Version 10.1.017 + SGI Altix SMP ia64 Intel(R) Fortran Itanium(R) Version 10.1.017 + (cobalt) SGI MPI 1.38 + + SunOS 5.10 32- and 64-bit Sun WorkShop 6 update 2 C 5.9 Patch 124867-09 + (linew) Sun WorkShop 6 update 2 Fortran 95 8.3 + Patch 127000-07 + Sun WorkShop 6 update 2 C++ 5.8 + Patch 124863-11 + + Intel Xeon Linux 2.6.18- gcc 3.4.6 20060404 + 92.1.10.el5_lustre.1.6.6smp- Intel(R) C++ Version 10.0.026 + perfctr #2 SMP Intel(R) Fortran Compiler Version 10.0.026 + (abe) Open MPI 1.2.2 + MVAPICH2-0.9.8p28p2patched-intel-ofed-1.2 + compiled with icc v10.0.026 and ifort 10.0.026 + + IA-64 Linux 2.4.21-309.tg1 gcc (GCC) 3.2.2 + #1 SMP ia64 Intel(R) C++ Version 8.1.037 + (NCSA tg-login) Intel(R) Fortran Compiler Version 8.1.033 + mpich-gm-1.2.7p1..16-intel-8.1.037-r1 + + Windows XP Visual Studio 6.0 + Visual Studio .NET (with Intel Fortran 9.1) + Visual Studio 2005 (with Intel Fortran 9.1) + cygwin (gcc 3.4.4) + + Windows Vista Visual studio 2005 + Mac OS X Intel 10.5.6 i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 + g95 0.91 + + +Supported Configuration Features Summary +======================================== +Key: y = Tested and supported + n = Not supported or not tested in this release + C = Cluster + W = Workstation + ( ) = Footnote appears below second table + +Platform C F90 F90 C++ zlib SZIP + parallel parallel +Solaris2.10 32-bit n y n y y y +Solaris2.10 64-bit n y n n y y +IRIX64_6.5 32-bit n n n n y y +IRIX64_6.5 64-bit n y n n y y +WinXP Visual Studio 6.0 n n n y y y +WinXP CYGWIN n n n y y y +WinXP 2005 n y n y y y +WinXP .Net n y n y y y +WinVista 2005 n n n y y y +Mac OS X 10.4.10 n y n y y y +AIX 5.3 32-bit n y n y y n +FreeBSD 6.3 32- and 64-bit n n n y y y +RedHat EL4 2.6.9-42 i686 GNU (1) W y y y y y y +RedHat EL4 2.6.18-128 i686 GNU (1)W y y y y y y +RedHat EL4 2.6.18-128 i686 Intel W n y n y y n +RedHat EL4 2.6.18-128 i686 PGI W n y n y y n +SuSE Linux 2.6.16 x86_64 GNU (1) W y y n y y y +SuSE Linux 2.6.16 x86_64 Intel W n y n y y n +SuSE Linux 2.6.16 x86_64 PGI W n y n y y n +RedHat EL 4 2.6.18 Xeon Lustre C n y n y y y +SuSE Linux 2.4.21 ia64 C y y y y y y +SuSe Linux 2.6.16 SGI Altix ia64 C n y n y y y + + +Platform Shared static- Thread- + libraries(4) exec safe +Solaris2.10 32- and 64-bit y n y +IRIX64_6.5 32-bit y n y +IRIX64_6.5 64-bit y n y +WinXP Visual Studio 6.0 y n n +WinXP CYGWIN y n n +WinXP 2005 y n n +WinXP .Net y n n +WinVista 2005 y n n +Mac OS X 10.5.6 n n n +AIX 5.3 32-bit n n n +FreeBSD 6.3 32- and 64-bit y n n +RedHat EL4 2.6.9-42 i686 GNU (1) W y n y +RedHat EL4 2.6.9-42 i686 GNU (1) W y n y +RedHat EL4 2.6.9-42 i686 Intel W y n n +RedHat EL4 2.6.9-42 i686 PGI W n n n +SuSE Linux 2.6.16 x86_64 GNU (1) W y n y +SuSE Linux 2.6.16 x86_64 Intel W y n n +SuSE Linux 2.6.16 x86_64 PGI W n n n +RedHat EL4 2.6.18 Xeon Lustre C y n n +SuSE Linux 2.4.21 ia64 C y n n +SuSe Linux 2.6.16 SGI Altix ia64 C n n n + +Compiler versions for each platform are listed in the "Platforms Tested" +table found elsewhere in this file (RELEASE.txt). Unless otherwise noted, +compilers used are the system compilers. + +Footnotes: +(1) Fortran compiled with g95. + + +Known Problems +============== +* Parallel tests failed with 15, 16, and 32 processes with data inconsistency + at testphdf5 / dataset_readAll. Parallel tests also failed with 64 processes + with collective abort of all ranks at testphdf5 / collective irregular simple + chunk write. CMC - 2009/04/28 + +* h5repack may not handle committed datatypes correctly. NAF - 2009/4/20 - 1516/ + 1466 + +* When in production mode, any presence of the '-g' flag within CFLAGS is + stripped out during configuration. This currently cannot be overridden. + In order to build with '-g' specified within CFLAGS, use the + --disable-production configure flag in order to configure in development + mode. MAM - 2009/03/09. + +* We discovered two problems when running collective IO parallel HDF5 tests + with chunking storage with the ChaMPIon MPI compiler on tungsten, a Linux + cluster at NCSA. + Under some complex selection cases, + 1) MPI_Get_element returns the wrong value. + 2) MPI_Type_struct also generates the wrong derived datatype and corrupt + data may be generated. + This only happens when turning on collective IO with chunking storage + with some complex selections. We haven't found these problems on other + MPI-IO compilers. If you encounter these problems, you may use Independent + IO instead. + + To avoid this problem, change the following line in your code: + H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE); + to + H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_INDEPENDENT); + KY - 2007/08/24 + +* QSC (an HP alpha-based OSF1 cluster) does not create h5pfc correctly. It + does not include the -lmpi properly. This will be fixed in the next + release. AKC - 2007/08/07. + +* On IRIX64 6.5 (UCAR SGI mop1), when testing HDF5 tools with an HDF5 shared + library, especially for h5repacktst and h52gifgentst, the following (or a + similar) error message may appear: + "523648:lt-h5repacktst: rld: Fatal Error: Cannot Successfully map soname + 'libh5test.so.1' under any of the filenames .......(bunch of directories) + " + And the testing will fail. + + We believe this is a libtool problem. One way to get rid of this is to + add the paths of libh5test.so.1 and libh5.so.1 to the shared library path. + + You may do this, under csh: + setenv LD_LIBRARYN32_PATH [full path of HDF5 directory/test/.libs]:[full + path of HDF5 directory/src/.libs]:(existing paths)... + + NOTE: This problem ONLY affects the testing of the HDF5 library when you + build from source. It won't affect any applications that would like to link + with the HDF5 shared library since the shared library path needs to be set + anyway. KY - 2007/8/2 + +* QSC (an HP alpha-based OSF1 cluster) failed the testpar/testphdf5 sub-test + "calloc". All other tests passed. This indicates that a dataset using + chunked storage created by serial HDF5 may not work properly with parallel + HDF5. The calloc test can be skipped by running "prun ... testphdf5 -x + calloc". AKC - 2007/7/12. + +* When testing parallel HDF5 with the C compiler version MIPSpro 7.4.3 on IRIX + 6.5, set the environment variable MPI_TYPE_MAX to be a bigger number, for + example 120000, in order to pass the complicated collective IO tests inside + the parallel HDF5 library. This is not a problem inside the parallel HDF5 + library. You can always set a bigger number on your system. KY - 2005/10/6 + +* A contiguous or chunked dataset created by a sequential version of HDF5 + might not be able to be modified with a parallel version of the library. + Use the H5Pset_alloc_time function with H5D_ALLOC_TIME_EARLY to set up the + dataset creation property list to avoid the problem. EIP - 2005/09/09 + +* A dataset created or rewritten with the v1.6.3 library or after can't + be read with the v1.6.2 library or before when Fletcher32 EDC (a filter) is + enabled. There was a bug in the calculating code of the Fletcher32 + checksum in the library before v1.6.3. The checksum value wasn't consistent + between big-endian and little-endian systems. This bug was fixed in + Release 1.6.3. However, after fixing the bug, the checksum value is no + longer the same as before on little-endian system. HDF5 library releases + after 1.6.4 can still read datasets created or rewritten with an HDF5 + library of v1.6.2 or before. SLU - 2005/7/8 + +* test/big fails sometimes with the message "Possible overlap with another + region." The test selects regions randomly, and this error occurs when + two regions overlap each other; it is a bug in the test and not in + HDF5. Since the error is triggered by a random situation, it will + usually disappear if the test is re-run. + +* Newer SGI MIPSpro compilers (version 7.4.x) support C99 features but + have a "guard" statement in stdint.h that will #error and skip the rest + of the header file if the C99 option is not used explicitly. Hardsetting + $CC to c99 will resolve the problem. AKC - 2004/12/13 + +* On IBM AIX systems, parallel HDF5 mode will fail some tests with error + messages like "INFO: 0031-XXX ...". This is from the command poe. + Set the environment variable MP_INFOLEVEL to 0 to minimize the messages + and run the tests again. + + The tests may also fail with messages like "The socket name is already + in use". HDF5 does not use sockets. This is due to problems of the + poe command trying to set up the debug socket. Check whether there are + many old /tmp/s.pedb.* files staying around. These are sockets used by + the poe command and left behind due to failed commands. Ask your system + administrator to clean them out. Lastly, request IBM to provide a means + to run poe without the debug socket. + +* The h5dump tests may fail to match the expected output on some platforms + (e.g. parallel jobs, Windows) where the error messages directed to + "stderr" do not appear in the "right order" with output from stdout. + This is not an error. + +* The --enable-static-exec configure flag fails to compile for Solaris + platforms. This is due to the fact that not all of the system + libraries on Solaris are available in a static format. + + The --enable-static-exec configure flag also fails to correctly compile + on the IBM SP2 platform for the serial mode. The parallel mode works fine + with this option. + + The --enable-static-exec configure flag also fails to correctly compile + on the HPUX 11.00. + + It is suggested that you don't use this option on these platforms + during configuration. + +* Use the --disable-shared configure flag if building with an Absoft Fortran + compiler. + +* Information about building with PGI and Intel compilers is available in + INSTALL file sections 5.7 and 5.8. + +* In LANL QSC, the new cc compiler has problems converting small values of + long long (absolute values less than 1**-308) to double. This triggers + the test/dtypes to report failure in the following test: + Testing random sw long double -> double conversions + If -ieee is used, the converted doubles spread over the range 0.0 to + 10**-308. If -ieee is not used, the converted double values are mostly + 0.0, but occasionally appear as 10**-308. This has been reported to the + system staff. + + All other tests have passed. + + + %%%%1.6.8%%%% Release Information for hdf5-1.6.8 (10/November/2008) diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index 8241076..f8e1fd0 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -1,12 +1,12 @@ -HDF5 version 1.6.9 released on Fri May 1 15:26:44 CDT 2009 +HDF5 version 1.6.9-post0 currently under development ================================================================================ INTRODUCTION ============ -This document describes the differences between HDF5-1.6.8 and -HDF5-1.6.9. +This document describes the differences between HDF5-1.6.9 and +HDF5-1.6.9-*. It contains information on the platforms tested and known problems in -HDF5-1.6.9. For more details, check the HISTORY.txt file in +HDF5-1.6.9-*. For more details, check the HISTORY.txt file in the HDF5 source. HDF5 documentation can be found in the distributed release source code @@ -33,7 +33,7 @@ CONTENTS ======== - New Features - Support for New Platforms, Languages and Compilers -- Bug Fixes since HDF5-1.6.8 +- Bug Fixes since HDF5-1.6.9 - Documentation - Platforms Tested - Supported Configuration Features Summary @@ -44,8 +44,8 @@ New Features ============ Configuration: ------------------------- - - Added a Make target of check-all-install to test the correctness of - installing via the prefix= or $DESTDIR options. AKC - 2009/04/14 + - Record goes here + EIP - 2009/05/04 Library: -------- @@ -53,26 +53,12 @@ New Features Parallel Library: ----------------- - - Modified parallel tests to run with arbitrary number of processes. The - modified tests are testphdf5 (parallel dataset access, collective chunk - IO, irregular hyperslab selection with collective IO) and - t_chunk_alloc (chunk allocation). The rest of the parallel tests already - use in the code the number of processes available in the communicator. - CMC - 2009/04/28 + - None + Tools: ------ - - h5diff new flag, -c, --compare, list objects that are not comparable. - PVN - 2009/4/10 - 1368 - - h5diff new flag, -N, --nan, avoids NaNs detection. PVN - 2009/4/10 - - h5dump correctly specifies XML dtd / schema urls ADB - 2009/4/3 - 1519 - - h5dump: binary output defaults to NATIVE with -b optionally accepting - the form of binary output (NATIVE, FILE, BE, LE). PVN - 2008/11/14 - - h5repack: When user doesn't specify a chunk size, h5repack now defines - a default chunk size as the same size of the size of the hyperslab - used to read the chunks. The size of the hyperslabs are defined as - the size of each dimension or a predefined constant, whatever is smaller. - This assures that the chunk read fits in the chunk cache. PVN - 2008/11/21 + - None F90 API: -------- @@ -87,35 +73,22 @@ Support for New Platforms, Languages and Compilers ================================================== -Bug Fixes since HDF5-1.6.8 Release +Bug Fixes since HDF5-1.6.9 Release ================================== Library ------- - - Added H5Z_class1_t macro, as H5Z_class_t is now versioned in 1.8. - NAF - 2009/04/20 - 1533 - - Fixed a bug that prevented more than one dataset chunk from being cached - at a time. NAF - 2009/02/12 - - H5Dset_extent: when shrinking dimensions, some chunks were not deleted. - Shrinking to a zero size dimension caused an assertion in the library. - PVN - 2009/01/8 + - None Configuration ------------- - - h5perf will now get installed during 'make install'. MAM - 2008/11/17 + - None Performance ----------- Tools ----- - - h5dump, h5diff, h5repack were not reading (by hyperslabs) datasets - that have a datatype datum size greater than H5TOOLS_BUFSIZE, a constant - defined as 1024Kb, such as array types with large dimensions. - PVN - 2009/4/1 - 1501 - - h5import: By selecting a compression type, a big endian byte order was - being selected. PVN - 2009/3/11 - 1462 - - zip_perf.c had missing argument on one of the open() calls. Fixed. - AKC - 2008/12/9 + - None F90 API ------- @@ -123,9 +96,7 @@ Bug Fixes since HDF5-1.6.8 Release C++ API ------- - - Revised Attribute::write and Attribute::read wrappers to handle - memory allocation/deallocation properly. (Bugzilla 1045) - BMR - 2009/4/19 + - None Documentation @@ -146,10 +117,6 @@ Documentation http://hdfgroup.org/HDF5/doc1.6/ADGuide/Changes.html - Since the stream I/O driver is not included in this release, the - functions H5Pset_fapl_stream and H5Pget_fapl_stream and the stream - ENUM value H5FD_STREAM have been removed from the documentation. - Platforms Tested ================ diff --git a/src/H5public.h b/src/H5public.h index dfbc391..5a63a1b 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -67,9 +67,9 @@ extern "C" { #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 6 /* For minor interface/format changes */ #define H5_VERS_RELEASE 9 /* For tweaks, bug-fixes, or development */ -#define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */ +#define H5_VERS_SUBRELEASE "post0" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.6.9" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.6.9-post0" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) |