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-rw-r--r--src/H5A.c259
-rw-r--r--src/H5Apkg.h3
-rw-r--r--src/H5O.c5
-rw-r--r--src/H5Oattr.c25
-rw-r--r--src/H5Ocont.c38
-rw-r--r--src/H5TBprivate.h5
-rw-r--r--test/Dependencies34
-rw-r--r--testpar/Dependencies4
-rw-r--r--tools/h5jam/Dependencies81
-rw-r--r--tools/h5repack/Dependencies43
-rw-r--r--tools/lib/Dependencies102
-rw-r--r--tools/misc/Dependencies2
12 files changed, 401 insertions, 200 deletions
diff --git a/src/H5A.c b/src/H5A.c
index 33b2948..668935d 100644
--- a/src/H5A.c
+++ b/src/H5A.c
@@ -23,6 +23,7 @@
#include "H5private.h" /* Generic Functions */
#include "H5Apkg.h" /* Attributes */
#include "H5Eprivate.h" /* Error handling */
+#include "H5FLprivate.h" /* Free Lists */
#include "H5Iprivate.h" /* IDs */
#include "H5MMprivate.h" /* Memory management */
#include "H5Spkg.h" /* Dataspace functions */
@@ -45,6 +46,9 @@ static herr_t H5A_rename(H5G_entry_t *ent, const char *old_name, const char *new
/* The number of reserved IDs in dataset ID group */
#define H5A_RESERVED_ATOMS 0
+/* Declare the free lists for H5A_t's */
+H5FL_DEFINE(H5A_t);
+
/*--------------------------------------------------------------------------
NAME
@@ -231,7 +235,7 @@ H5A_create(const H5G_entry_t *ent, const char *name, const H5T_t *type,
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dataspace extent has not been set")
/* Build the attribute information */
- if((attr = H5MM_calloc(sizeof(H5A_t)))==NULL)
+ if((attr = H5FL_CALLOC(H5A_t))==NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for attribute info")
/* Copy the attribute name */
@@ -511,7 +515,7 @@ static hid_t
H5A_open(H5G_entry_t *ent, unsigned idx, hid_t dxpl_id)
{
H5A_t *attr = NULL;
- hid_t ret_value = FAIL;
+ hid_t ret_value;
FUNC_ENTER_NOAPI_NOINIT(H5A_open)
@@ -529,9 +533,8 @@ H5A_open(H5G_entry_t *ent, unsigned idx, hid_t dxpl_id)
HGOTO_ERROR(H5E_ATTR, H5E_CANTOPENOBJ, FAIL, "unable to copy entry")
/* Hold the symbol table entry (and file) open */
- if (H5O_open(&(attr->ent)) < 0) {
+ if (H5O_open(&(attr->ent)) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTOPENOBJ, FAIL, "unable to open")
- }
attr->ent_opened=1;
/* Register the new attribute and get an ID for it */
@@ -624,7 +627,7 @@ H5A_write(H5A_t *attr, const H5T_t *mem_type, const void *buf, hid_t dxpl_id)
size_t dst_type_size; /* size of destination type*/
size_t buf_size; /* desired buffer size */
int idx; /* index of attribute in object header */
- herr_t ret_value = FAIL;
+ herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT(H5A_write)
@@ -637,50 +640,66 @@ H5A_write(H5A_t *attr, const H5T_t *mem_type, const void *buf, hid_t dxpl_id)
HGOTO_ERROR (H5E_ATTR, H5E_CANTCOUNT, FAIL, "dataspace is invalid")
H5_ASSIGN_OVERFLOW(nelmts,snelmts,hssize_t,size_t);
- /* Get the memory and file datatype sizes */
- src_type_size = H5T_get_size(mem_type);
- dst_type_size = H5T_get_size(attr->dt);
-
- /* Get the maximum buffer size needed and allocate it */
- buf_size=nelmts*MAX(src_type_size,dst_type_size);
- if (NULL==(tconv_buf = H5MM_malloc (buf_size)) || NULL==(bkg_buf = H5MM_calloc(buf_size)))
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
-
- /* Copy the user's data into the buffer for conversion */
- HDmemcpy(tconv_buf,buf,(src_type_size*nelmts));
-
- /* Convert memory buffer into disk buffer */
- /* Set up type conversion function */
- if (NULL == (tpath = H5T_path_find(mem_type, attr->dt, NULL, NULL, dxpl_id))) {
- HGOTO_ERROR(H5E_ATTR, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest data types")
- } else if (!H5T_path_noop(tpath)) {
- if ((src_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL)))<0 ||
- (dst_id = H5I_register(H5I_DATATYPE, H5T_copy(attr->dt, H5T_COPY_ALL)))<0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTREGISTER, FAIL, "unable to register types for conversion")
- }
-
- /* Perform data type conversion */
- if (H5T_convert(tpath, src_id, dst_id, nelmts, 0, 0, tconv_buf, bkg_buf, dxpl_id)<0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTENCODE, FAIL, "data type conversion failed")
+ if(nelmts>0) {
+ /* Get the memory and file datatype sizes */
+ src_type_size = H5T_get_size(mem_type);
+ dst_type_size = H5T_get_size(attr->dt);
- /* Free the previous attribute data buffer, if there is one */
- if(attr->data)
- H5MM_xfree(attr->data);
+ /* Convert memory buffer into disk buffer */
+ /* Set up type conversion function */
+ if (NULL == (tpath = H5T_path_find(mem_type, attr->dt, NULL, NULL, dxpl_id)))
+ HGOTO_ERROR(H5E_ATTR, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest data types")
- /* Look up the attribute for the object */
- if((idx=H5A_get_index(&(attr->ent),attr->name,dxpl_id))<0)
- HGOTO_ERROR(H5E_ATTR, H5E_BADVALUE, FAIL, "attribute not found")
+ /* Check for type conversion required */
+ if (!H5T_path_noop(tpath)) {
+ if ((src_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL)))<0 ||
+ (dst_id = H5I_register(H5I_DATATYPE, H5T_copy(attr->dt, H5T_COPY_ALL)))<0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTREGISTER, FAIL, "unable to register types for conversion")
- /* Modify the attribute data */
- attr->data=tconv_buf; /* Set the data pointer temporarily */
- if (H5O_modify(&(attr->ent), H5O_ATTR_ID, idx, 0, 1, attr, dxpl_id) < 0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, FAIL, "unable to update attribute header messages")
+ /* Get the maximum buffer size needed and allocate it */
+ buf_size=nelmts*MAX(src_type_size,dst_type_size);
+ if (NULL==(tconv_buf = H5MM_malloc (buf_size)) || NULL==(bkg_buf = H5MM_calloc(buf_size)))
+ HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
+
+ /* Copy the user's data into the buffer for conversion */
+ HDmemcpy(tconv_buf,buf,(src_type_size*nelmts));
+
+ /* Perform data type conversion */
+ if (H5T_convert(tpath, src_id, dst_id, nelmts, 0, 0, tconv_buf, bkg_buf, dxpl_id)<0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTENCODE, FAIL, "data type conversion failed")
+
+ /* Free the previous attribute data buffer, if there is one */
+ if(attr->data)
+ H5MM_xfree(attr->data);
+
+ /* Set the pointer to the attribute data to the converted information */
+ attr->data=tconv_buf;
+ } /* end if */
+ /* No type conversion necessary */
+ else {
+ HDassert(dst_type_size==src_type_size);
+
+ /* Allocate the attribute buffer, if there isn't one */
+ if(attr->data==NULL)
+ if (NULL==(attr->data = H5MM_malloc (dst_type_size*nelmts)))
+ HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
+
+ /* Copy the attribute data into the user's buffer */
+ HDmemcpy(attr->data,buf,(dst_type_size*nelmts));
+ } /* end else */
+
+ /* Look up the attribute for the object */
+ if((idx=H5A_get_index(&(attr->ent),attr->name,dxpl_id))<0)
+ HGOTO_ERROR(H5E_ATTR, H5E_BADVALUE, FAIL, "attribute not found")
+
+ /* Modify the attribute data */
+ if (H5O_modify(&(attr->ent), H5O_ATTR_ID, idx, 0, 1, attr, dxpl_id) < 0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, FAIL, "unable to update attribute header messages")
+ } /* end if */
/* Indicate the the attribute doesn't need fill-values */
attr->initialized=TRUE;
- ret_value=SUCCEED;
-
done:
/* Release resources */
if (src_id >= 0)
@@ -769,7 +788,7 @@ H5A_read(const H5A_t *attr, const H5T_t *mem_type, void *buf, hid_t dxpl_id)
size_t src_type_size; /* size of source type */
size_t dst_type_size; /* size of destination type */
size_t buf_size; /* desired buffer size */
- herr_t ret_value = FAIL;
+ herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT(H5A_read)
@@ -782,42 +801,51 @@ H5A_read(const H5A_t *attr, const H5T_t *mem_type, void *buf, hid_t dxpl_id)
HGOTO_ERROR (H5E_ATTR, H5E_CANTCOUNT, FAIL, "dataspace is invalid")
H5_ASSIGN_OVERFLOW(nelmts,snelmts,hssize_t,size_t);
- /* Get the memory and file datatype sizes */
- src_type_size = H5T_get_size(attr->dt);
- dst_type_size = H5T_get_size(mem_type);
-
- /* Check if the attribute has any data yet, if not, fill with zeroes */
- if(attr->ent_opened && !attr->initialized) {
- HDmemset(buf,0,(dst_type_size*nelmts));
- } /* end if */
- else { /* Attribute exists and has a value */
- /* Get the maximum buffer size needed and allocate it */
- buf_size=nelmts*MAX(src_type_size,dst_type_size);
- if (NULL==(tconv_buf = H5MM_malloc (buf_size)) || NULL==(bkg_buf = H5MM_calloc(buf_size)))
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
-
- /* Copy the attribute data into the buffer for conversion */
- HDmemcpy(tconv_buf,attr->data,(src_type_size*nelmts));
-
- /* Convert memory buffer into disk buffer */
- /* Set up type conversion function */
- if (NULL == (tpath = H5T_path_find(attr->dt, mem_type, NULL, NULL, dxpl_id))) {
- HGOTO_ERROR(H5E_ATTR, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest data types")
- } else if (!H5T_path_noop(tpath)) {
- if ((src_id = H5I_register(H5I_DATATYPE, H5T_copy(attr->dt, H5T_COPY_ALL)))<0 ||
- (dst_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL)))<0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTREGISTER, FAIL, "unable to register types for conversion")
- }
-
- /* Perform data type conversion. */
- if (H5T_convert(tpath, src_id, dst_id, nelmts, 0, 0, tconv_buf, bkg_buf, dxpl_id)<0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTENCODE, FAIL, "data type conversion failed")
-
- /* Copy the converted data into the user's buffer */
- HDmemcpy(buf,tconv_buf,(dst_type_size*nelmts));
- } /* end else */
-
- ret_value=SUCCEED;
+ if(nelmts>0) {
+ /* Get the memory and file datatype sizes */
+ src_type_size = H5T_get_size(attr->dt);
+ dst_type_size = H5T_get_size(mem_type);
+
+ /* Check if the attribute has any data yet, if not, fill with zeroes */
+ if(attr->ent_opened && !attr->initialized) {
+ HDmemset(buf,0,(dst_type_size*nelmts));
+ } /* end if */
+ else { /* Attribute exists and has a value */
+ /* Convert memory buffer into disk buffer */
+ /* Set up type conversion function */
+ if (NULL == (tpath = H5T_path_find(attr->dt, mem_type, NULL, NULL, dxpl_id)))
+ HGOTO_ERROR(H5E_ATTR, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest data types")
+
+ /* Check for type conversion required */
+ if (!H5T_path_noop(tpath)) {
+ if ((src_id = H5I_register(H5I_DATATYPE, H5T_copy(attr->dt, H5T_COPY_ALL)))<0 ||
+ (dst_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL)))<0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTREGISTER, FAIL, "unable to register types for conversion")
+
+ /* Get the maximum buffer size needed and allocate it */
+ buf_size=nelmts*MAX(src_type_size,dst_type_size);
+ if (NULL==(tconv_buf = H5MM_malloc (buf_size)) || NULL==(bkg_buf = H5MM_calloc(buf_size)))
+ HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
+
+ /* Copy the attribute data into the buffer for conversion */
+ HDmemcpy(tconv_buf,attr->data,(src_type_size*nelmts));
+
+ /* Perform data type conversion. */
+ if (H5T_convert(tpath, src_id, dst_id, nelmts, 0, 0, tconv_buf, bkg_buf, dxpl_id)<0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTENCODE, FAIL, "data type conversion failed")
+
+ /* Copy the converted data into the user's buffer */
+ HDmemcpy(buf,tconv_buf,(dst_type_size*nelmts));
+ } /* end if */
+ /* No type conversion necessary */
+ else {
+ HDassert(dst_type_size==src_type_size);
+
+ /* Copy the attribute data into the user's buffer */
+ HDmemcpy(buf,attr->data,(dst_type_size*nelmts));
+ } /* end else */
+ } /* end else */
+ } /* end if */
done:
/* Release resources */
@@ -1213,7 +1241,7 @@ H5A_rename(H5G_entry_t *ent, const char *old_name, const char *new_name, hid_t d
assert(new_name);
/* Build the attribute information */
- if((found_attr = HDcalloc(1, sizeof(H5A_t)))==NULL)
+ if((found_attr = H5FL_CALLOC(H5A_t))==NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for attribute info")
/* Read in the existing attributes to check for duplicates */
@@ -1485,9 +1513,10 @@ done:
*-------------------------------------------------------------------------
*/
H5A_t *
-H5A_copy(const H5A_t *old_attr)
+H5A_copy(H5A_t *_new_attr, const H5A_t *old_attr)
{
H5A_t *new_attr=NULL;
+ hbool_t allocated_attr=FALSE; /* Whether the attribute was allocated */
H5A_t *ret_value=NULL; /* Return value */
FUNC_ENTER_NOAPI(H5A_copy, NULL)
@@ -1496,8 +1525,13 @@ H5A_copy(const H5A_t *old_attr)
assert(old_attr);
/* get space */
- if (NULL==(new_attr = H5MM_calloc(sizeof(H5A_t))))
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
+ if(_new_attr==NULL) {
+ if (NULL==(new_attr = H5FL_MALLOC(H5A_t)))
+ HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
+ allocated_attr=TRUE;
+ } /* end if */
+ else
+ new_attr=_new_attr;
/* Copy the top level of the attribute */
*new_attr = *old_attr;
@@ -1520,7 +1554,7 @@ H5A_copy(const H5A_t *old_attr)
done:
if(ret_value==NULL) {
- if(new_attr!=NULL)
+ if(new_attr!=NULL && allocated_attr)
(void)H5A_close(new_attr);
} /* end if */
@@ -1529,6 +1563,47 @@ done:
/*-------------------------------------------------------------------------
+ * Function: H5A_free
+ *
+ * Purpose: Frees all memory associated with an attribute, but does not
+ * free the H5A_t structure (which should be done in H5T_close).
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * Monday, November 15, 2004
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5A_free(H5A_t *attr)
+{
+ herr_t ret_value=SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(H5A_free, FAIL)
+
+ assert(attr);
+
+ /* Free dynamicly allocated items */
+ if(attr->name)
+ H5MM_xfree(attr->name);
+ if(attr->dt)
+ if(H5T_close(attr->dt)<0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release datatype info")
+ if(attr->ds)
+ if(H5S_close(attr->ds)<0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release dataspace info")
+ if(attr->data)
+ H5MM_xfree(attr->data);
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5A_free() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5A_close
*
* Purpose: Frees an attribute and all associated memory.
@@ -1566,27 +1641,19 @@ H5A_close(H5A_t *attr)
} /* end if */
/* Free dynamicly allocated items */
- if(attr->name)
- H5MM_xfree(attr->name);
- if(attr->dt)
- if(H5T_close(attr->dt)<0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release datatype info")
- if(attr->ds)
- if(H5S_close(attr->ds)<0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release dataspace info")
- if(attr->data)
- H5MM_xfree(attr->data);
+ if(H5A_free(attr)<0)
+ HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release attribute info")
/* Close the object's symbol-table entry */
if(attr->ent_opened)
if(H5O_close(&(attr->ent))<0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTRELEASE, FAIL, "can't release object header info")
- H5MM_xfree(attr);
+ H5FL_FREE(H5A_t, attr);
done:
FUNC_LEAVE_NOAPI(ret_value)
-}
+} /* end H5A_close() */
/*-------------------------------------------------------------------------
diff --git a/src/H5Apkg.h b/src/H5Apkg.h
index 9c837ab..a354a48 100644
--- a/src/H5Apkg.h
+++ b/src/H5Apkg.h
@@ -55,7 +55,8 @@ struct H5A_t {
};
/* Function prototypes for H5A package scope */
-H5_DLL H5A_t *H5A_copy(const H5A_t *old_attr);
+H5_DLL H5A_t *H5A_copy(H5A_t *new_attr, const H5A_t *old_attr);
+H5_DLL herr_t H5A_free(H5A_t *attr);
H5_DLL herr_t H5A_close(H5A_t *attr);
#endif
diff --git a/src/H5O.c b/src/H5O.c
index f2a1226..396fed5 100644
--- a/src/H5O.c
+++ b/src/H5O.c
@@ -156,6 +156,9 @@ H5FL_BLK_DEFINE_STATIC(chunk_image);
/* Declare external the free list for time_t's */
H5FL_EXTERN(time_t);
+/* Declare extern the free list for H5O_cont_t's */
+H5FL_EXTERN(H5O_cont_t);
+
/*-------------------------------------------------------------------------
* Function: H5O_init_interface
@@ -2920,7 +2923,7 @@ H5O_alloc_new_chunk(H5F_t *f, H5O_t *oh, size_t size)
*/
oh->mesg[found_null].type = H5O_CONT;
oh->mesg[found_null].dirty = TRUE;
- if (NULL==(cont = H5MM_calloc(sizeof(H5O_cont_t))))
+ if (NULL==(cont = H5FL_MALLOC(H5O_cont_t)))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, UFAIL, "memory allocation failed");
cont->addr = HADDR_UNDEF;
cont->size = 0;
diff --git a/src/H5Oattr.c b/src/H5Oattr.c
index d41db50..e647743 100644
--- a/src/H5Oattr.c
+++ b/src/H5Oattr.c
@@ -71,6 +71,9 @@ const H5O_class_t H5O_ATTR[1] = {{
static int interface_initialize_g = 0;
#define INTERFACE_INIT NULL
+/* Declare extern the free list for H5A_t's */
+H5FL_EXTERN(H5A_t);
+
/* Declare external the free list for H5S_t's */
H5FL_EXTERN(H5S_t);
@@ -122,7 +125,7 @@ H5O_attr_decode(H5F_t *f, hid_t dxpl_id, const uint8_t *p, H5O_shared_t UNUSED *
assert(f);
assert(p);
- if (NULL==(attr = H5MM_calloc(sizeof(H5A_t))))
+ if (NULL==(attr = H5FL_CALLOC(H5A_t)))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
/* Version number */
@@ -145,9 +148,8 @@ H5O_attr_decode(H5F_t *f, hid_t dxpl_id, const uint8_t *p, H5O_shared_t UNUSED *
UINT16DECODE(p, attr->ds_size);
/* Decode and store the name */
- if (NULL==(attr->name=H5MM_malloc(name_len)))
+ if (NULL==(attr->name=H5MM_strdup((const char *)p)))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
- HDmemcpy(attr->name,p,name_len);
if(version < H5O_ATTR_VERSION_NEW)
p += H5O_ALIGN(name_len); /* advance the memory pointer */
else
@@ -382,14 +384,8 @@ H5O_attr_copy(const void *_src, void *_dst)
assert(src);
/* copy */
- if (NULL == (dst = H5A_copy(src)))
+ if (NULL == (dst = H5A_copy(_dst,src)))
HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, NULL, "can't copy attribute");
- /* was result already allocated? */
- if (_dst) {
- *((H5A_t *) _dst) = *dst;
- H5MM_xfree(dst);
- dst = (H5A_t *) _dst;
- }
/* Set return value */
ret_value=dst;
@@ -495,13 +491,8 @@ H5O_attr_reset(void *_mesg)
FUNC_ENTER_NOAPI_NOINIT(H5O_attr_reset);
- if (attr) {
- if (NULL==(tmp = H5MM_malloc(sizeof(H5A_t))))
- HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed");
- HDmemcpy(tmp,attr,sizeof(H5A_t));
- H5A_close(tmp);
- HDmemset(attr, 0, sizeof(H5A_t));
- }
+ if (attr)
+ H5A_free(attr);
done:
FUNC_LEAVE_NOAPI(ret_value);
diff --git a/src/H5Ocont.c b/src/H5Ocont.c
index 1058b37..8cc1a95 100644
--- a/src/H5Ocont.c
+++ b/src/H5Ocont.c
@@ -32,6 +32,7 @@
#include "H5private.h"
#include "H5Eprivate.h"
+#include "H5FLprivate.h" /* Free Lists */
#include "H5MMprivate.h"
#include "H5Opkg.h" /* Object header functions */
@@ -40,6 +41,7 @@
/* PRIVATE PROTOTYPES */
static void *H5O_cont_decode(H5F_t *f, hid_t dxpl_id, const uint8_t *p, H5O_shared_t *sh);
static herr_t H5O_cont_encode(H5F_t *f, uint8_t *p, const void *_mesg);
+static herr_t H5O_cont_free (void *mesg);
static herr_t H5O_cont_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE * stream,
int indent, int fwidth);
@@ -53,7 +55,7 @@ const H5O_class_t H5O_CONT[1] = {{
NULL, /*no copy method */
NULL, /*no size method */
NULL, /*reset method */
- NULL, /* free method */
+ H5O_cont_free, /* free method */
NULL, /* file delete method */
NULL, /* link method */
NULL, /*get share method */
@@ -64,6 +66,10 @@ const H5O_class_t H5O_CONT[1] = {{
/* Interface initialization */
static int interface_initialize_g = 0;
#define INTERFACE_INIT NULL
+
+/* Declare the free list for H5O_cont_t's */
+H5FL_DEFINE(H5O_cont_t);
+
/*-------------------------------------------------------------------------
* Function: H5O_cont_decode
@@ -96,10 +102,11 @@ H5O_cont_decode(H5F_t *f, hid_t UNUSED dxpl_id, const uint8_t *p, H5O_shared_t U
assert (!sh);
/* decode */
- if (NULL==(cont = H5MM_calloc(sizeof(H5O_cont_t))))
+ if (NULL==(cont = H5FL_MALLOC(H5O_cont_t)))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
H5F_addr_decode(f, &p, &(cont->addr));
H5F_DECODE_LENGTH(f, p, cont->size);
+ cont->chunkno=0;
/* Set return value */
ret_value=cont;
@@ -145,6 +152,33 @@ H5O_cont_encode(H5F_t *f, uint8_t *p, const void *_mesg)
/*-------------------------------------------------------------------------
+ * Function: H5O_cont_free
+ *
+ * Purpose: Free's the message
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Quincey Koziol
+ * Monday, November 15, 2004
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5O_cont_free (void *mesg)
+{
+ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_cont_free);
+
+ assert (mesg);
+
+ H5FL_FREE(H5O_cont_t,mesg);
+
+ FUNC_LEAVE_NOAPI(SUCCEED);
+} /* end H5O_cont_free() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5O_cont_debug
*
* Purpose: Prints debugging info.
diff --git a/src/H5TBprivate.h b/src/H5TBprivate.h
index f66d87c..0e374e3 100644
--- a/src/H5TBprivate.h
+++ b/src/H5TBprivate.h
@@ -62,10 +62,11 @@ typedef int (*H5TB_cmp_t)(const void *k1, const void *k2, int cmparg);
# define Intern(n) ( LeftCnt(n) && RightCnt(n) )
# define UnBal(n) ( LeftCnt(n)>RightCnt(n) ? LEFT : \
LeftCnt(n)==RightCnt(n) ? 0 : RIGHT)
+# define UnBalanced(n) ( LeftCnt(n)!=RightCnt(n) ? 1 : 0)
# define Double(n) ( H5TB_DOUBLE & (n)->flags )
# define Other(side) ( LEFT + RIGHT - (side) )
-# define Delta(n,s) ( ( Heavy(n,s) ? 1 : -1 ) \
- * ( Double(n) ? 2 : UnBal(n) ? 1 : 0 ) )
+# define Weight(n) ( Double(n) ? 2 : UnBalanced(n) )
+# define Delta(n,s) ( Heavy(n,s) ? Weight(n) : -Weight(n) )
# define SetFlags(n,s,b,i) ( ( -2<(b) && (b)<2 ? 0 : H5TB_DOUBLE ) \
| ( 0>(b) ? H5TB_HEAVY(s) : (b)>0 ? H5TB_HEAVY(Other(s)) : 0 ) \
| ( (i) ? H5TB_INTERN : 0 ) )
diff --git a/test/Dependencies b/test/Dependencies
index b1e1859..2e4be75 100644
--- a/test/Dependencies
+++ b/test/Dependencies
@@ -165,6 +165,8 @@ bittests.lo: \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
$(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h \
$(top_srcdir)/src/H5Rprivate.h \
@@ -195,6 +197,8 @@ cmpd_dset.lo: \
$(top_srcdir)/src/H5Fprivate.h \
$(top_srcdir)/src/H5Fpublic.h \
$(top_srcdir)/src/H5FDpublic.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
$(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h \
$(top_srcdir)/src/H5Rprivate.h \
@@ -312,6 +316,8 @@ dtypes.lo: \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
$(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h \
$(top_srcdir)/src/H5Rprivate.h \
@@ -559,6 +565,8 @@ gheap.lo: \
$(top_srcdir)/src/H5Gprivate.h \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
$(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h \
$(top_srcdir)/src/H5HGprivate.h \
@@ -653,11 +661,13 @@ istore.lo: \
$(top_srcdir)/src/H5Oprivate.h \
$(top_srcdir)/src/H5HGprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
- $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5Tprivate.h \
$(top_srcdir)/src/H5Gprivate.h \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
+ $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h \
$(top_srcdir)/src/H5Rprivate.h \
$(top_srcdir)/src/H5Zprivate.h \
@@ -871,11 +881,13 @@ ohdr.lo: \
$(top_srcdir)/src/H5Oprivate.h \
$(top_srcdir)/src/H5HGprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
- $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5Tprivate.h \
$(top_srcdir)/src/H5Gprivate.h \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
+ $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h \
$(top_srcdir)/src/H5Rprivate.h \
$(top_srcdir)/src/H5Zprivate.h \
@@ -924,6 +936,8 @@ stab.lo: \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
$(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h
tarray.lo: \
@@ -1170,6 +1184,8 @@ tfile.lo: \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
$(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5Pprivate.h \
$(top_srcdir)/src/H5Oprivate.h \
@@ -1225,11 +1241,13 @@ tgenprop.lo: \
$(top_srcdir)/src/H5Oprivate.h \
$(top_srcdir)/src/H5HGprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
- $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5Tprivate.h \
$(top_srcdir)/src/H5Gprivate.h \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
+ $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h \
$(top_srcdir)/src/H5Rprivate.h \
$(top_srcdir)/src/H5Zprivate.h \
@@ -1280,6 +1298,8 @@ th5s.lo: \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
$(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5Sprivate.h \
$(top_srcdir)/src/H5Dprivate.h \
@@ -1549,11 +1569,13 @@ tselect.lo: \
$(top_srcdir)/src/H5Oprivate.h \
$(top_srcdir)/src/H5HGprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
- $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5Tprivate.h \
$(top_srcdir)/src/H5Gprivate.h \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
+ $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h \
$(top_srcdir)/src/H5Rprivate.h \
$(top_srcdir)/src/H5Zprivate.h \
@@ -1812,11 +1834,13 @@ tmisc.lo: \
$(top_srcdir)/src/H5Oprivate.h \
$(top_srcdir)/src/H5HGprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
- $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5Tprivate.h \
$(top_srcdir)/src/H5Gprivate.h \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
+ $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h \
$(top_srcdir)/src/H5Rprivate.h \
$(top_srcdir)/src/H5Zprivate.h \
diff --git a/testpar/Dependencies b/testpar/Dependencies
index aab346b..cadd728 100644
--- a/testpar/Dependencies
+++ b/testpar/Dependencies
@@ -286,11 +286,13 @@ t_coll_chunk.lo: \
$(top_srcdir)/src/H5Oprivate.h \
$(top_srcdir)/src/H5HGprivate.h \
$(top_srcdir)/src/H5Fprivate.h \
- $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5Tprivate.h \
$(top_srcdir)/src/H5Gprivate.h \
$(top_srcdir)/src/H5Bprivate.h \
$(top_srcdir)/src/H5ACprivate.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
+ $(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5RSprivate.h \
$(top_srcdir)/src/H5Rprivate.h \
$(top_srcdir)/src/H5Zprivate.h
diff --git a/tools/h5jam/Dependencies b/tools/h5jam/Dependencies
index e69de29..13f0fac 100644
--- a/tools/h5jam/Dependencies
+++ b/tools/h5jam/Dependencies
@@ -0,0 +1,81 @@
+## This file is machine generated on GNU systems.
+## Only temporary changes may be made here.
+
+h5jam.lo: \
+ $(srcdir)/h5jam.c \
+ $(top_srcdir)/src/hdf5.h \
+ $(top_srcdir)/src/H5public.h \
+ $(top_builddir)/src/H5pubconf.h \
+ $(top_srcdir)/src/H5api_adpt.h \
+ $(top_srcdir)/src/H5Apublic.h \
+ $(top_srcdir)/src/H5Ipublic.h \
+ $(top_srcdir)/src/H5ACpublic.h \
+ $(top_srcdir)/src/H5Bpublic.h \
+ $(top_srcdir)/src/H5Dpublic.h \
+ $(top_srcdir)/src/H5Epublic.h \
+ $(top_srcdir)/src/H5Fpublic.h \
+ $(top_srcdir)/src/H5FDpublic.h \
+ $(top_srcdir)/src/H5Gpublic.h \
+ $(top_srcdir)/src/H5Opublic.h \
+ $(top_srcdir)/src/H5HGpublic.h \
+ $(top_srcdir)/src/H5HLpublic.h \
+ $(top_srcdir)/src/H5MMpublic.h \
+ $(top_srcdir)/src/H5Ppublic.h \
+ $(top_srcdir)/src/H5Zpublic.h \
+ $(top_srcdir)/src/H5Rpublic.h \
+ $(top_srcdir)/src/H5Spublic.h \
+ $(top_srcdir)/src/H5Tpublic.h \
+ $(top_srcdir)/src/H5FDcore.h \
+ $(top_srcdir)/src/H5FDfamily.h \
+ $(top_srcdir)/src/H5FDgass.h \
+ $(top_srcdir)/src/H5FDlog.h \
+ $(top_srcdir)/src/H5FDmpi.h \
+ $(top_srcdir)/src/H5FDmpio.h \
+ $(top_srcdir)/src/H5FDmpiposix.h \
+ $(top_srcdir)/src/H5FDmulti.h \
+ $(top_srcdir)/src/H5FDsec2.h \
+ $(top_srcdir)/src/H5FDsrb.h \
+ $(top_srcdir)/src/H5FDstdio.h \
+ $(top_srcdir)/src/H5FDstream.h \
+ $(top_srcdir)/src/H5private.h \
+ $(top_srcdir)/src/H5MPprivate.h \
+ $(top_srcdir)/tools/lib/h5tools_utils.h
+h5unjam.lo: \
+ $(srcdir)/h5unjam.c \
+ $(top_srcdir)/src/hdf5.h \
+ $(top_srcdir)/src/H5public.h \
+ $(top_builddir)/src/H5pubconf.h \
+ $(top_srcdir)/src/H5api_adpt.h \
+ $(top_srcdir)/src/H5Apublic.h \
+ $(top_srcdir)/src/H5Ipublic.h \
+ $(top_srcdir)/src/H5ACpublic.h \
+ $(top_srcdir)/src/H5Bpublic.h \
+ $(top_srcdir)/src/H5Dpublic.h \
+ $(top_srcdir)/src/H5Epublic.h \
+ $(top_srcdir)/src/H5Fpublic.h \
+ $(top_srcdir)/src/H5FDpublic.h \
+ $(top_srcdir)/src/H5Gpublic.h \
+ $(top_srcdir)/src/H5Opublic.h \
+ $(top_srcdir)/src/H5HGpublic.h \
+ $(top_srcdir)/src/H5HLpublic.h \
+ $(top_srcdir)/src/H5MMpublic.h \
+ $(top_srcdir)/src/H5Ppublic.h \
+ $(top_srcdir)/src/H5Zpublic.h \
+ $(top_srcdir)/src/H5Rpublic.h \
+ $(top_srcdir)/src/H5Spublic.h \
+ $(top_srcdir)/src/H5Tpublic.h \
+ $(top_srcdir)/src/H5FDcore.h \
+ $(top_srcdir)/src/H5FDfamily.h \
+ $(top_srcdir)/src/H5FDgass.h \
+ $(top_srcdir)/src/H5FDlog.h \
+ $(top_srcdir)/src/H5FDmpi.h \
+ $(top_srcdir)/src/H5FDmpio.h \
+ $(top_srcdir)/src/H5FDmpiposix.h \
+ $(top_srcdir)/src/H5FDmulti.h \
+ $(top_srcdir)/src/H5FDsec2.h \
+ $(top_srcdir)/src/H5FDsrb.h \
+ $(top_srcdir)/src/H5FDstdio.h \
+ $(top_srcdir)/src/H5FDstream.h \
+ $(top_srcdir)/src/H5private.h \
+ $(top_srcdir)/src/H5MPprivate.h \
+ $(top_srcdir)/tools/lib/h5tools_utils.h
diff --git a/tools/h5repack/Dependencies b/tools/h5repack/Dependencies
index 144030c..d1c825c 100644
--- a/tools/h5repack/Dependencies
+++ b/tools/h5repack/Dependencies
@@ -168,49 +168,6 @@ h5repack_refs.lo: \
$(top_srcdir)/tools/lib/h5trav.h \
$(top_srcdir)/tools/lib/h5diff.h \
$(top_srcdir)/tools/lib/h5tools.h
-h5repack_layout.lo: \
- $(srcdir)/h5repack_layout.c \
- $(top_srcdir)/src/hdf5.h \
- $(top_srcdir)/src/H5public.h \
- $(top_builddir)/src/H5pubconf.h \
- $(top_srcdir)/src/H5api_adpt.h \
- $(top_srcdir)/src/H5Apublic.h \
- $(top_srcdir)/src/H5Ipublic.h \
- $(top_srcdir)/src/H5ACpublic.h \
- $(top_srcdir)/src/H5Bpublic.h \
- $(top_srcdir)/src/H5Dpublic.h \
- $(top_srcdir)/src/H5Epublic.h \
- $(top_srcdir)/src/H5Fpublic.h \
- $(top_srcdir)/src/H5FDpublic.h \
- $(top_srcdir)/src/H5Gpublic.h \
- $(top_srcdir)/src/H5Opublic.h \
- $(top_srcdir)/src/H5HGpublic.h \
- $(top_srcdir)/src/H5HLpublic.h \
- $(top_srcdir)/src/H5MMpublic.h \
- $(top_srcdir)/src/H5Ppublic.h \
- $(top_srcdir)/src/H5Zpublic.h \
- $(top_srcdir)/src/H5Rpublic.h \
- $(top_srcdir)/src/H5Spublic.h \
- $(top_srcdir)/src/H5Tpublic.h \
- $(top_srcdir)/src/H5FDcore.h \
- $(top_srcdir)/src/H5FDfamily.h \
- $(top_srcdir)/src/H5FDgass.h \
- $(top_srcdir)/src/H5FDlog.h \
- $(top_srcdir)/src/H5FDmpi.h \
- $(top_srcdir)/src/H5FDmpio.h \
- $(top_srcdir)/src/H5FDmpiposix.h \
- $(top_srcdir)/src/H5FDmulti.h \
- $(top_srcdir)/src/H5FDsec2.h \
- $(top_srcdir)/src/H5FDsrb.h \
- $(top_srcdir)/src/H5FDstdio.h \
- $(top_srcdir)/src/H5FDstream.h \
- $(top_srcdir)/test/h5test.h \
- $(top_srcdir)/src/H5private.h \
- $(top_srcdir)/src/H5MPprivate.h \
- $(srcdir)/h5repack.h \
- $(top_srcdir)/tools/lib/h5trav.h \
- $(top_srcdir)/tools/lib/h5diff.h \
- $(top_srcdir)/tools/lib/h5tools.h
h5repack_list.lo: \
$(srcdir)/h5repack_list.c \
$(top_srcdir)/src/H5private.h \
diff --git a/tools/lib/Dependencies b/tools/lib/Dependencies
index f780960..62f5b24 100644
--- a/tools/lib/Dependencies
+++ b/tools/lib/Dependencies
@@ -162,8 +162,8 @@ h5diff.lo: \
$(srcdir)/h5trav.h \
$(top_srcdir)/src/H5private.h \
$(top_srcdir)/src/H5MPprivate.h
-h5diff_array.lo: \
- $(srcdir)/h5diff_array.c \
+h5diff_attr.lo: \
+ $(srcdir)/h5diff_attr.c \
$(srcdir)/h5diff.h \
$(top_srcdir)/src/hdf5.h \
$(top_srcdir)/src/H5public.h \
@@ -201,9 +201,10 @@ h5diff_array.lo: \
$(top_srcdir)/src/H5FDstream.h \
$(srcdir)/h5trav.h \
$(top_srcdir)/src/H5private.h \
- $(top_srcdir)/src/H5MPprivate.h
-h5diff_attr.lo: \
- $(srcdir)/h5diff_attr.c \
+ $(top_srcdir)/src/H5MPprivate.h \
+ $(srcdir)/h5tools.h
+h5diff_dset.lo: \
+ $(srcdir)/h5diff_dset.c \
$(srcdir)/h5diff.h \
$(top_srcdir)/src/hdf5.h \
$(top_srcdir)/src/H5public.h \
@@ -241,9 +242,10 @@ h5diff_attr.lo: \
$(top_srcdir)/src/H5FDstream.h \
$(srcdir)/h5trav.h \
$(top_srcdir)/src/H5private.h \
- $(top_srcdir)/src/H5MPprivate.h
-h5diff_dset.lo: \
- $(srcdir)/h5diff_dset.c \
+ $(top_srcdir)/src/H5MPprivate.h \
+ $(srcdir)/h5tools.h
+h5diff_util.lo: \
+ $(srcdir)/h5diff_util.c \
$(srcdir)/h5diff.h \
$(top_srcdir)/src/hdf5.h \
$(top_srcdir)/src/H5public.h \
@@ -281,11 +283,10 @@ h5diff_dset.lo: \
$(top_srcdir)/src/H5FDstream.h \
$(srcdir)/h5trav.h \
$(top_srcdir)/src/H5private.h \
- $(top_srcdir)/src/H5MPprivate.h \
- $(srcdir)/h5tools.h
-h5diff_util.lo: \
- $(srcdir)/h5diff_util.c \
- $(srcdir)/h5diff.h \
+ $(top_srcdir)/src/H5MPprivate.h
+h5trav.lo: \
+ $(srcdir)/h5trav.c \
+ $(srcdir)/h5trav.h \
$(top_srcdir)/src/hdf5.h \
$(top_srcdir)/src/H5public.h \
$(top_builddir)/src/H5pubconf.h \
@@ -320,11 +321,10 @@ h5diff_util.lo: \
$(top_srcdir)/src/H5FDsrb.h \
$(top_srcdir)/src/H5FDstdio.h \
$(top_srcdir)/src/H5FDstream.h \
- $(srcdir)/h5trav.h \
$(top_srcdir)/src/H5private.h \
$(top_srcdir)/src/H5MPprivate.h
-h5trav.lo: \
- $(srcdir)/h5trav.c \
+h5trav_table.lo: \
+ $(srcdir)/h5trav_table.c \
$(srcdir)/h5trav.h \
$(top_srcdir)/src/hdf5.h \
$(top_srcdir)/src/H5public.h \
@@ -362,9 +362,8 @@ h5trav.lo: \
$(top_srcdir)/src/H5FDstream.h \
$(top_srcdir)/src/H5private.h \
$(top_srcdir)/src/H5MPprivate.h
-h5trav_table.lo: \
- $(srcdir)/h5trav_table.c \
- $(srcdir)/h5trav.h \
+h5tools_filters.lo: \
+ $(srcdir)/h5tools_filters.c \
$(top_srcdir)/src/hdf5.h \
$(top_srcdir)/src/H5public.h \
$(top_builddir)/src/H5pubconf.h \
@@ -399,10 +398,10 @@ h5trav_table.lo: \
$(top_srcdir)/src/H5FDsrb.h \
$(top_srcdir)/src/H5FDstdio.h \
$(top_srcdir)/src/H5FDstream.h \
- $(top_srcdir)/src/H5private.h \
- $(top_srcdir)/src/H5MPprivate.h
-h5tools_filters.lo: \
- $(srcdir)/h5tools_filters.c \
+ $(srcdir)/h5tools.h
+h5tools_ref.lo: \
+ $(srcdir)/h5tools_ref.c \
+ $(srcdir)/h5tools_ref.h \
$(top_srcdir)/src/hdf5.h \
$(top_srcdir)/src/H5public.h \
$(top_builddir)/src/H5pubconf.h \
@@ -437,10 +436,13 @@ h5tools_filters.lo: \
$(top_srcdir)/src/H5FDsrb.h \
$(top_srcdir)/src/H5FDstdio.h \
$(top_srcdir)/src/H5FDstream.h \
- $(srcdir)/h5tools.h
-h5tools_ref.lo: \
- $(srcdir)/h5tools_ref.c \
- $(srcdir)/h5tools_ref.h \
+ $(top_srcdir)/src/H5private.h \
+ $(top_srcdir)/src/H5MPprivate.h \
+ $(srcdir)/h5tools.h \
+ $(srcdir)/h5tools_utils.h
+h5tools_type.lo: \
+ $(srcdir)/h5tools_type.c \
+ $(srcdir)/h5tools.h \
$(top_srcdir)/src/hdf5.h \
$(top_srcdir)/src/H5public.h \
$(top_builddir)/src/H5pubconf.h \
@@ -474,11 +476,7 @@ h5tools_ref.lo: \
$(top_srcdir)/src/H5FDsec2.h \
$(top_srcdir)/src/H5FDsrb.h \
$(top_srcdir)/src/H5FDstdio.h \
- $(top_srcdir)/src/H5FDstream.h \
- $(top_srcdir)/src/H5private.h \
- $(top_srcdir)/src/H5MPprivate.h \
- $(srcdir)/h5tools.h \
- $(srcdir)/h5tools_utils.h
+ $(top_srcdir)/src/H5FDstream.h
talign.lo: \
$(srcdir)/talign.c \
$(top_srcdir)/src/hdf5.h \
@@ -516,3 +514,43 @@ talign.lo: \
$(top_srcdir)/src/H5FDstdio.h \
$(top_srcdir)/src/H5FDstream.h \
$(srcdir)/h5tools.h
+h5diff_array.lo: \
+ $(srcdir)/h5diff_array.c \
+ $(srcdir)/h5diff.h \
+ $(top_srcdir)/src/hdf5.h \
+ $(top_srcdir)/src/H5public.h \
+ $(top_builddir)/src/H5pubconf.h \
+ $(top_srcdir)/src/H5api_adpt.h \
+ $(top_srcdir)/src/H5Apublic.h \
+ $(top_srcdir)/src/H5Ipublic.h \
+ $(top_srcdir)/src/H5ACpublic.h \
+ $(top_srcdir)/src/H5Bpublic.h \
+ $(top_srcdir)/src/H5Dpublic.h \
+ $(top_srcdir)/src/H5Epublic.h \
+ $(top_srcdir)/src/H5Fpublic.h \
+ $(top_srcdir)/src/H5FDpublic.h \
+ $(top_srcdir)/src/H5Gpublic.h \
+ $(top_srcdir)/src/H5Opublic.h \
+ $(top_srcdir)/src/H5HGpublic.h \
+ $(top_srcdir)/src/H5HLpublic.h \
+ $(top_srcdir)/src/H5MMpublic.h \
+ $(top_srcdir)/src/H5Ppublic.h \
+ $(top_srcdir)/src/H5Zpublic.h \
+ $(top_srcdir)/src/H5Rpublic.h \
+ $(top_srcdir)/src/H5Spublic.h \
+ $(top_srcdir)/src/H5Tpublic.h \
+ $(top_srcdir)/src/H5FDcore.h \
+ $(top_srcdir)/src/H5FDfamily.h \
+ $(top_srcdir)/src/H5FDgass.h \
+ $(top_srcdir)/src/H5FDlog.h \
+ $(top_srcdir)/src/H5FDmpi.h \
+ $(top_srcdir)/src/H5FDmpio.h \
+ $(top_srcdir)/src/H5FDmpiposix.h \
+ $(top_srcdir)/src/H5FDmulti.h \
+ $(top_srcdir)/src/H5FDsec2.h \
+ $(top_srcdir)/src/H5FDsrb.h \
+ $(top_srcdir)/src/H5FDstdio.h \
+ $(top_srcdir)/src/H5FDstream.h \
+ $(srcdir)/h5trav.h \
+ $(top_srcdir)/src/H5private.h \
+ $(top_srcdir)/src/H5MPprivate.h
diff --git a/tools/misc/Dependencies b/tools/misc/Dependencies
index a06d1fb..02c5b44 100644
--- a/tools/misc/Dependencies
+++ b/tools/misc/Dependencies
@@ -16,6 +16,8 @@ h5debug.lo: \
$(top_srcdir)/src/H5Fpublic.h \
$(top_srcdir)/src/H5Ipublic.h \
$(top_srcdir)/src/H5FDpublic.h \
+ $(top_srcdir)/src/H5Cprivate.h \
+ $(top_srcdir)/src/H5Cpublic.h \
$(top_srcdir)/src/H5RCprivate.h \
$(top_srcdir)/src/H5Dprivate.h \
$(top_srcdir)/src/H5Dpublic.h \