diff options
| -rw-r--r-- | tools/Makefile.in | 7 | ||||
| -rw-r--r-- | tools/h5toh4.c | 1407 | ||||
| -rw-r--r-- | tools/h5toh4.h | 39 |
3 files changed, 1451 insertions, 2 deletions
diff --git a/tools/Makefile.in b/tools/Makefile.in index 9306e3b..48061ca 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -20,11 +20,11 @@ LIB=libh5tools.a PROGS=h5debug h5import h5ls h5repart h5dump @H5TOH4@ # Source and object files for the library. -LIB_SRC=h5tools.c +LIB_SRC=h5tools.c h5findshd.c LIB_OBJ=$(LIB_SRC:.c=.o) # Source and object files for programs... -PROG_SRC=h5debug.c h5import.c h5ls.c h5repart.c h5dump.c h5dumputil.c +PROG_SRC=h5debug.c h5import.c h5ls.c h5repart.c h5dump.c h5dumputil.c h5toh4.c PROG_OBJ=$(PROG_SRC:.c=.o) PRIVATE_HDR=h5tools.h @@ -54,4 +54,7 @@ h5repart: h5repart.o h5dump: h5dump.o h5dumputil.o $(CC) $(CFLAGS) -o $@ h5dump.o h5dumputil.o $(LDFLAGS) $(LIBS) +h5toh4: h5toh4.o + $(CC) $(CFLAGS) -o $@ h5toh4.o $(LDFLAGS) $(LIBS) + @CONCLUDE@ diff --git a/tools/h5toh4.c b/tools/h5toh4.c new file mode 100644 index 0000000..e44a339 --- /dev/null +++ b/tools/h5toh4.c @@ -0,0 +1,1407 @@ + + +/****************************************************************************** + + Description: This file contains routines to translate H5 files to H4 files. + + Author: Paul Harten for the University of Illinois, NCSA + + Creation Date: 04 October 1998 + + History: + + +*****************************************************************************/ + +#include <stdio.h> +#include <sys/fcntl.h> +#include <sys/errno.h> +#include <string.h> + +#include <h5toh4.h> + +extern int PrintOptions_h5toh4(void); +extern char *BuildFilename(char *h5_filename, char *h4_extension); +extern int test_file(char *filename, int oflag, mode_t mode); +extern int test_dir(char *); +extern int h5toh4(char *, char *); + +extern herr_t convert_group(hid_t, char *, op_data_t *); +extern herr_t convert_dataset(hid_t, char *, op_data_t *); +extern herr_t convert_all(hid_t, char *, op_data_t *); +extern herr_t convert_attr(hid_t, char *, op_data_t *); +extern int32 h5type_to_h4type(hid_t); +extern hid_t h4type_to_memtype(int32); + +extern void init_table(void); +extern void free_table(void); +extern void dump_tables(void); +extern herr_t find_shared_objs(hid_t , char *, void *); + +extern int optind; +extern void perror(const char *); +extern int errno; + +typedef herr_t (*H5G_operator_t)(hid_t, const char*, void*); + + +/***************************************************************************** + + Routine: main() + + Description: This routine check out arguments sent, makes sure everything is + ok, chooses between the acceptable argument formats and then + calls h5toh4(). + + Input: arg - the number of arguments from the call + 1; + argv - a pointer to an array of strings which are the arguments. + This includes the routine name as the first string. + + Output: function return - error status + +*****************************************************************************/ + +int +main(int argc, char **argv) +{ + char **fargv; + char *h5_filename, *h4_filename; + char *h4_extension = "hdf"; + int status = 0; + int status2 = 0; + + fargv = argv + optind; + argc -= optind; + + if (argc == 0) { + fprintf(stderr,"\nError: Invalid Arguments\n"); + PrintOptions_h5toh4(); + return -1; + } + + while ( *fargv != NULL ) { + if ( strcmp(*fargv,"-h") == 0 ) { + PrintOptions_h5toh4(); + return -1; + } + fargv++; + } + + fargv = argv + optind; + + if (argc == 2 && strcmp(*fargv,"-m") == 0) { + fargv++; + argc--; + } + + switch(argc) { + + case 0: + + PrintOptions_h5toh4(); + break; + + case 1: /* h5toh4 file1 */ + h5_filename = *fargv; + + if (strcmp(h5_filename,"-m") == 0) { + fprintf(stderr,"\nError: Invalid Arguments\n"); + PrintOptions_h5toh4(); + status = -1; + break; + } + if (test_file(h5_filename,O_EXCL,292) != 0 ) { /* 292 Decimal - 0444 Octal, a+r */ + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status = -1; + break; + } + if (test_dir(h5_filename) != 0 ) { + fprintf(stderr,"%s: Is a directory\n",h5_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status = -1; + break; + } + + h4_filename = BuildFilename(h5_filename,h4_extension); + if (h4_filename == NULL) { + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status = -1; + break; + } + + if (test_file(h4_filename,O_CREAT|O_EXCL,436) != 0) { /* 436 Decimal - 0664 Octal, ug+rw,o+r */ + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status = -1; + break; + } + + status = h5toh4(h5_filename, h4_filename); + if ( status != 0 ) { + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + } + HDfree(h4_filename); + + break; + + case 2: /* h5toh4 file_in file_out */ + h5_filename = *fargv++; + h4_filename = *fargv++; + + if (strcmp(h4_filename,"-m") == 0) { + fprintf(stderr,"\nError: Invalid Arguments\n"); + PrintOptions_h5toh4(); + status = -1; + break; + } + if (test_file(h5_filename,O_EXCL,292) != 0 ) { /* 292 Decimal - 0444 Octal, a+r */ + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status = -1; + break; + } + if (test_dir(h5_filename) != 0 ) { + fprintf(stderr,"%s: Is a directory\n",h5_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status = -1; + break; + } + if (test_file(h4_filename,O_CREAT|O_RDWR,436) != 0) { /* 436 Decimal - 0664 Octal, ug+rw,o+r */ + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status = -1; + break; + } + if (test_dir(h4_filename) != 0 ) { + fprintf(stderr,"%s: Is a directory\n",h4_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status = -1; + break; + } + + status = h5toh4(h5_filename, h4_filename); + if ( status != 0 ) { + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + } + break; + + default: /* h5toh4 -m file1 file2 file3 ... */ + if (strcmp(*fargv++,"-m") != 0) { + fprintf(stderr,"\nError: Invalid Arguments\n"); + PrintOptions_h5toh4(); + status = -1; + break; + } + + while ( (h5_filename = *fargv++) != NULL ) { + + if (strcmp(h5_filename,"-m") == 0) { + fprintf(stderr,"\nError: Invalid Arguments\n"); + PrintOptions_h5toh4(); + status2 = -1; + break; + } + if (test_file(h5_filename,O_EXCL,292) != 0 ) { /* 292 Decimal - 0444 Octal, a+r */ + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status2 = -1; + continue; + } + if (test_dir(h5_filename) != 0 ) { + fprintf(stderr,"%s: Is a directory\n",h5_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status2 = -1; + continue; + } + + h4_filename = BuildFilename(h5_filename,h4_extension); + if (h4_filename == NULL) { + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status2 = -1; + continue; + } + + if (test_file(h4_filename,O_CREAT|O_EXCL,436) != 0) { /* 436 Decimal - 0664 Octal, ug+rw,o+r */ + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status2 = -1; + continue; + } + + status = h5toh4(h5_filename, h4_filename); + if ( status != 0 ) { + fprintf(stderr,"Error: Problem with %s\n",h5_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__); + status2 = status; + } + HDfree(h4_filename); + + } + status = status2; + break; + } + + return status; + +} + + +/***************************************************************************** + + Routine: PrintOptions_h5toh4() + + Description: This routine prints the acceptable argument formats out to stderr. + + Input: None + + Output: output to stderr + +*****************************************************************************/ + +int PrintOptions_h5toh4() +{ + fprintf(stderr,"\nh5toh4 -h (gives this print-out)\n"); + fprintf(stderr,"h5toh4 file.h5 file.hdf\n"); + fprintf(stderr,"h5toh4 file.h5\n"); + fprintf(stderr,"h5toh4 -m file1.h5 file2.h5 ...\n\n"); + return (SUCCEED); +} + + +/***************************************************************************** + + Routine: h5toh4() + + Description: This routine translates information from a HDF5 file into a + HDF4 file. + + Input: h5_filename - filename of HDF5 file, + h4_filename - filename of HDF4 file + + Output: function return - error status + +*****************************************************************************/ + +int h5toh4(h5_filename, h4_filename) + char *h5_filename; + char *h4_filename; +{ + + hid_t fid, gid; + hid_t plist=H5P_DEFAULT; + int status = 0; + int32 hfile_id; + int32 sd_id; + op_data_t op_data; + void *edata; + hid_t (*func)(void*); + + /* open hdf5 file */ + if ((fid = H5Fopen (h5_filename, H5F_ACC_RDONLY, plist)) <= 0) { + fprintf(stderr,"Error: Unable to open file %s\n",h5_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + return (fid); + } + + /* open root group */ + if ((gid = H5Gopen (fid, "/")) <= 0 ) { + fprintf(stderr,"Error: Unable to open root group\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + return (gid); + } else { + + /* open hdf4 file */ + if ((hfile_id = Hopen(h4_filename, DFACC_CREATE, 0)) <= 0) { + fprintf(stderr,"Error: Unable to open file %s\n", h4_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + return (hfile_id); + } else { + + if ((sd_id = SDstart(h4_filename, DFACC_RDWR)) <= 0) { + fprintf(stderr,"Error: Unable to open file %s, using SDstart\n", h4_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + return (sd_id); + } else { + + /* Initialize Vgroup interface */ + if ((status = Vstart(hfile_id)) != SUCCEED) { + fprintf(stderr,"Error: Unable to initialize Vgroup interface\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + status = FAIL; + } + + /* allocate and initialize internal data structure */ + init_table(); + + /* Disable error reporting */ + H5Eget_auto (&func, &edata); + H5Eset_auto (NULL, NULL); + + /* find all shared objects */ + if ((status = H5Giterate(fid, "/", NULL, (H5G_operator_t)find_shared_objs, NULL)) != SUCCEED ) { + fprintf(stderr,"Error: Unable to iterate over all of the groups\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + } + + /* Enable error reporting */ + H5Eset_auto (func, edata); + +#ifdef H5DUMP_DEBUG + dump_tables(); +#endif + + if (status != SUCCEED) { + fprintf(stderr,"Error: internal error! \n"); + goto done; + } + + op_data.hfile_id = hfile_id; + op_data.sd_id = sd_id; + op_data.vgroup_id = 0; + + /* start at root group */ + if (( status = convert_group (gid, "/", &op_data)) != SUCCEED) { + fprintf(stderr,"Error: convert_group did not work for %s\n","/"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + status = FAIL; + } + + /* Terminate access to Vgroup interface */ + if ((status = Vend(hfile_id)) != SUCCEED) { + fprintf(stderr,"Error: Unable to terminate Vgroup interface\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + status = FAIL; + } + } + + /* close hdf4 SDS */ + if ((status = SDend(sd_id)) != SUCCEED) { + fprintf(stderr,"Error: Unable to close file %s, from SDstart\n", h4_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + status = FAIL; + } + + } + + /* close hdf4 file */ + if ((status = Hclose(hfile_id)) != SUCCEED) { + fprintf(stderr,"Error: Unable to close file %s\n", h4_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + status = FAIL; + } + + } + + if ((status = H5Gclose (gid)) != SUCCEED) { + fprintf(stderr,"Error: Unable to close root group\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + status = FAIL; + } + + if ((status = H5Fclose (fid)) != SUCCEED) { + fprintf(stderr,"Error: Unable to close file %s\n", h5_filename); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__); + status = FAIL; + } + +done: + + free_table(); + + return status; + +} + +/*------------------------------------------------------------------------- + * Function: convert_group + * + * Purpose: Dump everything within the specified group + * + * Return: void + * + * Programmer: Paul Harten + * + * Modifications: + * + *-----------------------------------------------------------------------*/ +herr_t +convert_group (hid_t gid, char *name, op_data_t *op_data) { +H5G_stat_t statbuf; + + int32 hfile_id; + int32 vgroup_id; + int32 obj_idx; + int32 status; + + hfile_id = op_data->hfile_id; + + if ((vgroup_id = Vattach(hfile_id, -1, "w")) <= 0 ) { + fprintf(stderr,"Error: Unable to create new vgroup\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); + return(vgroup_id); + } + + if ((status = Vsetname(vgroup_id, name)) != SUCCEED ) { + fprintf(stderr,"Error: Unable to set name on new vgroup\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); + return(status); + } + + if ((status = Vsetclass(vgroup_id, "HDF5")) != SUCCEED ) { + fprintf(stderr,"Error: Unable to set class on new vgroup\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); + return(status); + } + + if (op_data->vgroup_id == 0) { + obj_idx = -1; /* Indexes assigned below start from 0 */ + } else { + if ((obj_idx = Vinsert(op_data->vgroup_id, vgroup_id)) < 0) { + fprintf(stderr,"Error: Index %d of the new vgroup is illegal\n",(int)obj_idx); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); + return(obj_idx); + } + } + op_data->vgroup_id = vgroup_id; + op_data->sds_id = 0; + op_data->vdata_id = 0; + op_data->obj_idx = obj_idx; + + + /* hard link */ + if ((status = H5Gget_objinfo(gid, ".", TRUE, &statbuf)) != SUCCEED ) { + fprintf(stderr,"Error: H5Gget_objinfo() did not work\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); + return (status); + } + + if ((status = H5Aiterate(gid, NULL, (H5G_operator_t)convert_attr, op_data)) != SUCCEED ) { + fprintf(stderr,"Error: Unable to iterate over all of the attributes\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); + status = FAIL; + } + + if ((status = H5Giterate(gid, ".", NULL, (H5G_operator_t)convert_all, op_data)) != SUCCEED ) { + fprintf(stderr,"Error: Unable to iterate over all of the groups\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); + status = FAIL; + } + + if ((status = Vdetach(vgroup_id)) != SUCCEED ) { + fprintf(stderr,"Error: Unable to detach the new Vgroup\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__); + status = FAIL; + } + + return status; + +} + + +/*------------------------------------------------------------------------- + * Function: convert_dataset + * + * Purpose: Dump the specified data set + * + * Return: void + * + * Programmer: Paul Harten + * + * Modifications: + * + *-----------------------------------------------------------------------*/ +herr_t +convert_dataset (hid_t did, char *name, op_data_t *op_data) { +hid_t type, space, class, mem_type, type2; +H5G_stat_t statbuf; +size_t typesize; +int i, idx; +int32 dim_sizes[32], start[32], edges[32]; +int ndims; +int ndimf; +hsize_t dims[32], maxdims[32]; +size_t dimf[4]; +int permf[4]; +int32 hfile_id; +int32 sd_id; +int32 sds_id; +int32 vdata_id; +int32 n_values; +int32 status; +int32 h4_type; +int32 recsize; +int32 n_records, num_of_recs, record_pos; +intn nmembers; +char *buffer; /* read/write buffer*/ +char fieldname_list[4096] = "\0"; +char *fieldname; +hid_t fieldtype; +int32 order; +off_t offset; + + sd_id = op_data->sd_id; + + /* hard link */ + if ((status = H5Gget_objinfo(did, ".", TRUE, &statbuf)) != SUCCEED ) { + fprintf(stderr,"Error: H5Gget_objinfo() did not work\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + return (status); + } + + if ((type = H5Dget_type(did)) <= 0) { + fprintf(stderr, "Error: H5Dget_type() didn't return appropriate value.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + return status; + } + + if ((space = H5Dget_space(did)) <= 0) { + fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + return status; + } + + if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) { + fprintf(stderr, "Error: H5Sget_simple_extent_npoints() returned inappropriate value.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + return status; + } + + if ((ndims = H5Sget_simple_extent_dims(space,dims,maxdims)) < 0 ) { + fprintf(stderr, "Error: Problems getting ndims, dims, and maxdims of dataset\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = ndims; + return status; + } + + if ((class = H5Tget_class(type)) < 0 ) { + fprintf(stderr,"Error: problem with getting class\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = class; + return status; + } + + switch (class) { + case H5T_INTEGER: + case H5T_FLOAT: + if ((h4_type = h5type_to_h4type(type)) == FAIL ) { + fprintf(stderr, "Error: Problems translating h5 type to h4 type\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + break; + } + if ((mem_type = h4type_to_memtype(h4_type)) == FAIL ) { + fprintf(stderr, "Error: Problems translating h4 type to mem type\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + return status; + } + if ((typesize = H5Tget_size(mem_type)) <= 0) { + fprintf(stderr, "Error: H5Tget_size() didn't return appropriate value.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + break; + } + if ((buffer = HDmalloc(n_values*typesize)) == NULL) { + fprintf(stderr, "Error: Problems with HDmalloc of memory space\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + break; + } + if ((status = H5Dread(did, mem_type, space, space, H5P_DEFAULT, buffer)) != SUCCEED) { + fprintf(stderr, "Error: Problems with H5Aread\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + break; + } + for (i=0;i<ndims;i++) { + if (i==0) { + dim_sizes[i] = (int32)maxdims[i]; + } else if (maxdims[i] == 0) { + dim_sizes[i] = (int32)dims[i]; + } else { + dim_sizes[i] = (int32)maxdims[i]; + } + start[i] = 0; + edges[i] = (int32)dims[i]; + } + if ((sds_id = SDcreate(sd_id, name, h4_type, ndims, dim_sizes)) <= 0 ) { + fprintf(stderr, "Error: Unable to create SDS %s.\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + break; + } + op_data->sds_id = sds_id; + if ((status = SDwritedata(sds_id, start, NULL, edges, buffer)) != SUCCEED ) { + fprintf(stderr, "Error: Unable to write SDS %s.\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + } + if ((status = H5Aiterate(did, NULL, (H5G_operator_t)convert_attr, op_data)) < 0 ) { + fprintf(stderr,"Error: iterate over attributes\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + } + if ((status = SDendaccess(sds_id)) != SUCCEED ) { + fprintf(stderr, "Error: Unable to end access to SDS %s.\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + } + break; + case H5T_TIME: + fprintf(stderr,"Error: H5T_TIME not yet implemented.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + case H5T_STRING: + fprintf(stderr,"Error: H5T_STRING not yet implemented.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + case H5T_BITFIELD: + fprintf(stderr,"Error: H5T_BITFIELD not yet implemented.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + case H5T_OPAQUE: + fprintf(stderr,"Error: H5T_OPAQUE not yet implemented.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + case H5T_COMPOUND: + if (ndims==1) { + if ((nmembers = H5Tget_nmembers(type)) <= 0 ) { + fprintf(stderr, "Error: Unable to get information about compound datatype %d\n",nmembers); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + for (idx=0;idx<nmembers;idx++) { + if ((ndimf = H5Tget_member_dims(type, idx, dimf, permf)) > 1 ) { + fprintf(stdout,"Warning: H5 datasets of H5T_COMPOUND type with ndims = 1, whose members\n"); + fprintf(stdout,"Warning: of the H5T_COMPOUND type have rank > 1 are not converted.\n"); + break; + } + } + hfile_id = op_data->hfile_id; + if ((vdata_id = VSattach(hfile_id, -1, "w")) <= 0 ) { + fprintf(stderr, "Error: Unable to create vdata %s.\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + break; + } + op_data->vdata_id = vdata_id; + if ((status = VSsetname(vdata_id, name)) != SUCCEED ) { + fprintf(stderr, "Error: Unable to set vdata name %s.\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + if ((status = VSsetclass(vdata_id, "HDF5")) != SUCCEED ) { + fprintf(stderr, "Error: Unable to set class on vdata %s\n", name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + for (idx=0;idx<nmembers;idx++) { + if ((ndimf = H5Tget_member_dims(type, idx, dimf, NULL)) < 0 ) { + fprintf(stderr, "Error: field rank for H5T_COMPOUND type %d, idx %d < 0\n", type, idx); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + if ((fieldname = H5Tget_member_name(type, idx)) == NULL ) { + fprintf(stderr, "Error: Unable to get fieldname for compound type %d, idx %d\n", type, idx); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + if ((fieldtype = H5Tget_member_type(type, idx)) < 0 ) { + fprintf(stderr,"Error: H5 datasets of H5T_COMPOUND type with fieldtype %d, idx %d.\n",fieldtype,idx); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + if ((h4_type = h5type_to_h4type(fieldtype)) < 0 ) { + fprintf(stderr, "Error: Problems translating h5 type to h4 type\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } +/* + if ((mem_type = h4type_to_memtype(h4_type)) == FAIL ) { + fprintf(stderr, "Error: Problems translating h4 type to mem type\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + return FAIL; + } +*/ + if (ndimf == 0 ) { + order = 1; + } else { + order = dimf[0]; + } + if ((status = VSfdefine(vdata_id, fieldname, h4_type, order)) != SUCCEED ) { + fprintf(stderr, "Error: Unable to set field %d\n", idx); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + strcat(fieldname_list,fieldname); + if (idx<nmembers-1) { + strcat(fieldname_list,", "); + } + + HDfree(fieldname); + } + if ((status = VSsetfields(vdata_id, fieldname_list)) != SUCCEED ) { + fprintf(stderr, "Error: Unable to set fieldname list %s\n", name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + if ((status = VSsetinterlace(vdata_id, FULL_INTERLACE)) != SUCCEED ) { + fprintf(stderr, "Error: Unable to set FULL_INTERLACE mode, status %d\n", (int)status); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + + if ((type2 = H5Tcopy(type)) <= 0 ) { + fprintf(stderr, "Error: H5Tcopy did not SUCCEED, type %d\n", type2); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + if ((status = H5Tpack(type2)) != SUCCEED ) { + fprintf(stderr, "Error: H5Tpack did not SUCCEED, status %d\n", (int)status); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + if ((recsize = H5Tget_size(type2)) <= 0 ) { + fprintf(stderr, "Error: Unable to get record size %d\n", (int)recsize); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + n_records = (int32)dims[0]; + if ((buffer = HDmalloc(n_records*recsize)) == NULL) { + fprintf(stderr, "Error: Problems with HDmalloc of memory space\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + break; + } + if ((status = H5Dread(did, type2, space, space, H5P_DEFAULT, buffer)) != SUCCEED) { + fprintf(stderr, "Error: Problems with H5Aread\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + break; + } + + if ((record_pos = VSseek(vdata_id, 0)) != 0 ) { + fprintf(stderr, "Error: Could not seek the beginning of the Vdata, %d\n", (int)record_pos); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + if ((num_of_recs = VSwrite(vdata_id, (void *)buffer, n_records, FULL_INTERLACE)) != n_records ) { + fprintf(stderr, "Error: Only able to write %d of %d records\n", (int)num_of_recs, (int)n_records); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + /* there are only vdata attributes, no field attributes */ + if ((status = H5Aiterate(did, NULL, (H5G_operator_t)convert_attr, op_data)) < 0 ) { + fprintf(stderr,"Error: iterate over attributes\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + } + if ((status = VSdetach(vdata_id)) != SUCCEED ) { + fprintf(stderr, "Error: Unable to detach to vdata %s.\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + + if ((status = H5Tclose(type2)) != SUCCEED ) { + fprintf(stderr, "Error: H5Tclose did not SUCCEED, status %d\n", (int)status); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + break; + } + } else { + fprintf(stdout,"Warning: H5 datasets of H5T_COMPOUND type with ndims > 1 are not converted.\n"); + } + break; + default: + fprintf(stderr,"Error: %d class not found\n",class); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + } + + if ((status = H5Tclose(type)) < 0 ) { + fprintf(stderr,"Error: closing type\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + } + + if ((status = H5Sclose(space)) < 0 ) { + fprintf(stderr,"Error: closing space\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + } + + HDfree(buffer); + + return status; + +} + + +/*------------------------------------------------------------------------- + * Function: convert_attr + * + * Purpose: dump the attribute + * + * Return: Success: SUCCEED + * + * Failure: FAIL + * + * Programmer: Paul Harten + * + * Modifications: + * + *-----------------------------------------------------------------------*/ + +herr_t +convert_attr (hid_t attr, char *attr_name, op_data_t *op_data) +{ +hid_t attr_id, type, space, mem_type; +size_t typesize; +char *attr_values; +int32 status; +int32 h4_type; +int32 sds_id; +int32 vdata_id; +int32 vgroup_id; +int32 n_values; + + sds_id = op_data->sds_id; + vdata_id = op_data->vdata_id; + vgroup_id = op_data->vgroup_id; + + if ((attr_id = H5Aopen_name (attr, attr_name))>= 0) { + + if ((type = H5Aget_type(attr_id)) <= 0) { + fprintf(stderr, "Error: H5Dget_type() didn't return appropriate value.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + return status; + } + + if ((space = H5Aget_space(attr_id)) <= 0) { + fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr2", __FILE__, __LINE__); + status = FAIL; + return status; + } + + if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) { + fprintf(stderr, "Error: H5sget_simple_extent_npoints() didn't return correct value.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + + if ((h4_type = h5type_to_h4type(type)) == FAIL ) { + fprintf(stderr, "Error: Problems translating h5 type to h4 type\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + + if ((mem_type = h4type_to_memtype(h4_type)) == FAIL ) { + fprintf(stderr, "Error: Problems translating h4 type to mem type\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__); + status = FAIL; + return status; + } + + if ((typesize = H5Tget_size(mem_type)) <= 0) { + fprintf(stderr, "Error: H5Tget_size() didn't return appropriate value.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + + if ((attr_values = HDmalloc(n_values*typesize)) == NULL) { + fprintf(stderr, "Error: Problems with HDmalloc of memory space\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + + if ((status = H5Aread(attr_id, mem_type, attr_values)) != SUCCEED) { + fprintf(stderr, "Error: Problems with H5Aread\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + + if (sds_id != 0) { + if ((status = SDsetattr(sds_id, attr_name, h4_type, n_values, attr_values)) != SUCCEED ) { + fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + } else if (vdata_id != 0) { + if ((status = VSsetattr(vdata_id, -1, attr_name, h4_type, n_values, attr_values)) != SUCCEED ) { + fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + } else { + if ((status = Vsetattr(vgroup_id, attr_name, h4_type, n_values, attr_values)) != SUCCEED ) { + fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + + } + + if ((status = H5Tclose(type)) != SUCCEED ) { + fprintf(stderr, "Error: Problems closing H5Tclose\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + if ((status = H5Sclose(space)) != SUCCEED ) { + fprintf(stderr, "Error: Problems closing H5Sclose\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + if ((status = H5Aclose(attr_id)) != SUCCEED ) { + fprintf(stderr, "Error: Problems closing H5Aclose\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__); + status = FAIL; + } + + HDfree(attr_values); + + status = SUCCEED; + + } else { + + status = FAIL; + + } + + return status; + +} + + +/*------------------------------------------------------------------------- + * Function: convert_all + * + * Purpose: Dump everything in the specified object + * + * Return: Success: SUCCEED + * + * Failure: FAIL + * + * Programmer: Paul Harten + * + * Modifications: + * + *-----------------------------------------------------------------------*/ +herr_t +convert_all (hid_t group, char *name, op_data_t *op_data) +{ + hid_t obj; + H5G_stat_t statbuf; + int status; + op_data_t op_data_save; + int32 vgroup_id; + char *sds_name; + int32 sd_id; + int32 sds_id; + int32 sds_ref; + int32 sds_index; + void *edata; + hid_t (*func)(void*); + + op_data_save = *op_data; + + vgroup_id = op_data->vgroup_id; + sd_id = op_data->sd_id; + sds_id = op_data->sds_id; + + if ((status = H5Gget_objinfo(group, name, FALSE, &statbuf)) != SUCCEED ) { + fprintf(stderr,"Error: H5Gget_objinfo() did not work\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + return (status); + } + + switch (statbuf.type) { + + case H5G_LINK: + + if (statbuf.nlink==0) { + + /* Disable error reporting */ + H5Eget_auto (&func, &edata); + H5Eset_auto (NULL, NULL); + + /* test to see if object exists */ + if ((status = H5Gget_objinfo(group, name, TRUE, NULL)) != SUCCEED ) { + fprintf(stdout,"Warning: the object pointed to by the symbolic link \"%s\" does not exist.\n",name); + } + + /* Enable error reporting */ + H5Eset_auto (func, edata); + + if (status != SUCCEED) { + break; + } + + } + /* follow link */ + if ((status = H5Gget_objinfo(group, name, TRUE, &statbuf)) != SUCCEED ) { + fprintf(stderr,"Error: H5Gget_objinfo() did not work\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + return (status); + } + + if (statbuf.type==H5G_DATASET) { + + sds_name = HDmalloc (statbuf.linklen*sizeof(char)); + if ((status = H5Gget_linkval (group, name, statbuf.linklen, sds_name)) != SUCCEED ) { + fprintf (stderr,"Error: unable to get link value.\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + return (status); + } + if ((sds_index = SDnametoindex(sd_id, sds_name)) < 0 ) { + fprintf (stderr,"Error: Problem with SDnametoindex().\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + return (sds_index); + } + if ((sds_id = SDselect(sd_id, sds_index)) < 0 ) { + fprintf (stderr,"Error: Problem with SDselect().\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + return (sds_id); + } + if ((sds_ref = SDidtoref(sds_id)) < 0 ) { + fprintf (stderr,"Error: Problem with SDidtoref().\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + return (sds_ref); + } + if ((status = Vaddtagref(vgroup_id, DFTAG_NDG, sds_ref)) != SUCCEED ) { + fprintf (stderr,"Error: Problem with Vaddtagref().\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + return (status); + } + + free (sds_name); + + } + + break; + + case H5G_GROUP: + if ((obj = H5Gopen (group, name)) <= 0 ) { + fprintf(stderr,"Error: Unable to open group\n"); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + return (obj); + } else { + if (( status = convert_group (obj, name, op_data)) != SUCCEED) { + fprintf(stderr,"Error: convert_group did not work for %s\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + status = FAIL; + break; + } + } + if ((status = H5Gclose(obj)) != SUCCEED) { + fprintf(stderr,"Error: Unable to close group %s\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + status = FAIL; + break; + } + break; + + case H5G_DATASET: + + if ((obj = H5Dopen (group, name)) <= 0 ) { + fprintf(stderr,"Error: Unable to open H5 dataset %s\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + return (obj); + } else { + if (( status = convert_dataset (obj, name, op_data)) != SUCCEED) { + fprintf(stderr,"Error: convert_dataset did not work for %s\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + status = FAIL; + break; + } + } + if ((status = H5Dclose(obj)) != SUCCEED) { + fprintf(stderr,"Error: Unable to close H5 dataset %s\n",name); + DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__); + status = FAIL; + break; + } + break; + + case H5G_TYPE: + /* object is ignored */ + break; + + default: + fprintf (stderr,"Unknown Object %s\n", name); + status = 1; + return FAIL; + break; + + } + + *op_data = op_data_save; + + return SUCCEED; + +} + + +/***************************************************************************** + + Routine: h5type_to_h4type(h5type) + + Description: Translate h5 datatype into h4 datatype + + Input: h5 datatype + + Output: function return, h4 datatype + +*****************************************************************************/ + +int32 h5type_to_h4type(hid_t h5_datatype) +{ + int32 h4_datatype; + + if (H5Tequal(h5_datatype,H5T_STD_I8BE)) { + h4_datatype = DFNT_INT8; + } else if (H5Tequal(h5_datatype,H5T_STD_I16BE)) { + h4_datatype = DFNT_INT16; + } else if (H5Tequal(h5_datatype,H5T_STD_I32BE)) { + h4_datatype = DFNT_INT32; + } else if (H5Tequal(h5_datatype,H5T_STD_I64BE)) { + h4_datatype = DFNT_INT64; + } else if (H5Tequal(h5_datatype,H5T_STD_U8BE)) { + h4_datatype = DFNT_UINT8; + } else if (H5Tequal(h5_datatype,H5T_STD_U16BE)) { + h4_datatype = DFNT_UINT16; + } else if (H5Tequal(h5_datatype,H5T_STD_U32BE)) { + h4_datatype = DFNT_UINT32; + } else if (H5Tequal(h5_datatype,H5T_STD_U64BE)) { + h4_datatype = DFNT_UINT64; + } else if (H5Tequal(h5_datatype,H5T_IEEE_F32BE)) { + h4_datatype = DFNT_FLOAT32; + } else if (H5Tequal(h5_datatype,H5T_IEEE_F64BE)) { + h4_datatype = DFNT_FLOAT64; + } else if (H5Tequal(h5_datatype,H5T_STD_I8LE)) { + h4_datatype = DFNT_INT8; + } else if (H5Tequal(h5_datatype,H5T_STD_I16LE)) { + h4_datatype = DFNT_INT16; + } else if (H5Tequal(h5_datatype,H5T_STD_I32LE)) { + h4_datatype = DFNT_INT32; + } else if (H5Tequal(h5_datatype,H5T_STD_I64LE)) { + h4_datatype = DFNT_INT64; + } else if (H5Tequal(h5_datatype,H5T_STD_U8LE)) { + h4_datatype = DFNT_UINT8; + } else if (H5Tequal(h5_datatype,H5T_STD_U16LE)) { + h4_datatype = DFNT_UINT16; + } else if (H5Tequal(h5_datatype,H5T_STD_U32LE)) { + h4_datatype = DFNT_UINT32; + } else if (H5Tequal(h5_datatype,H5T_STD_U64LE)) { + h4_datatype = DFNT_UINT64; + } else if (H5Tequal(h5_datatype,H5T_IEEE_F32LE)) { + h4_datatype = DFNT_FLOAT32; + } else if (H5Tequal(h5_datatype,H5T_IEEE_F64LE)) { + h4_datatype = DFNT_FLOAT64; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_CHAR)) { + h4_datatype = DFNT_INT8; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_UCHAR)) { + h4_datatype = DFNT_UINT8; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_SHORT)) { + h4_datatype = DFNT_INT16; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_USHORT)) { + h4_datatype = DFNT_UINT16; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_INT)) { + h4_datatype = DFNT_INT32; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_UINT)) { + h4_datatype = DFNT_UINT32; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_LONG)) { + h4_datatype = DFNT_INT64; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_ULONG)) { + h4_datatype = DFNT_UINT64; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_LLONG)) { + h4_datatype = DFNT_INT128; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_ULLONG)) { + h4_datatype = DFNT_UINT128; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_FLOAT)) { + h4_datatype = DFNT_FLOAT32; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_DOUBLE)) { + h4_datatype = DFNT_FLOAT64; + } else if (H5Tequal(h5_datatype,H5T_NATIVE_LDOUBLE)) { + h4_datatype = DFNT_FLOAT128; + } else { + h4_datatype = FAIL; + } + + return h4_datatype; + +} + + +/***************************************************************************** + + Routine: h4type_to_memtype(h4type) + + Description: Translate h4 datatype into mem datatype + + Input: h4 datatype + + Output: function return, mem datatype + +*****************************************************************************/ + +hid_t h4type_to_memtype(int32 h4_datatype) +{ + hid_t mem_datatype; + + switch (h4_datatype) { + case DFNT_INT8: + case DFNT_NINT8: + case DFNT_LINT8: + mem_datatype = H5T_NATIVE_CHAR; break; + case DFNT_UINT8: + case DFNT_NUINT8: + case DFNT_LUINT8: + mem_datatype = H5T_NATIVE_UCHAR; break; + case DFNT_INT16: + case DFNT_NINT16: + case DFNT_LINT16: + mem_datatype = H5T_NATIVE_SHORT; break; + case DFNT_UINT16: + case DFNT_NUINT16: + case DFNT_LUINT16: + mem_datatype = H5T_NATIVE_USHORT; break; + case DFNT_INT32: + case DFNT_NINT32: + case DFNT_LINT32: + mem_datatype = H5T_NATIVE_INT; break; + case DFNT_UINT32: + case DFNT_NUINT32: + case DFNT_LUINT32: + mem_datatype = H5T_NATIVE_UINT; break; + case DFNT_INT64: + case DFNT_NINT64: + case DFNT_LINT64: + mem_datatype = H5T_NATIVE_LONG; break; + case DFNT_UINT64: + case DFNT_NUINT64: + case DFNT_LUINT64: + mem_datatype = H5T_NATIVE_ULONG; break; + case DFNT_INT128: + case DFNT_NINT128: + case DFNT_LINT128: + mem_datatype = H5T_NATIVE_LLONG; break; + case DFNT_UINT128: + case DFNT_NUINT128: + case DFNT_LUINT128: + mem_datatype = H5T_NATIVE_ULLONG; break; + case DFNT_FLOAT32: + case DFNT_NFLOAT32: + case DFNT_LFLOAT32: + mem_datatype = H5T_NATIVE_FLOAT; break; + case DFNT_FLOAT64: + case DFNT_NFLOAT64: + case DFNT_LFLOAT64: + mem_datatype = H5T_NATIVE_DOUBLE; break; + case DFNT_FLOAT128: + case DFNT_NFLOAT128: + case DFNT_LFLOAT128: + mem_datatype = H5T_NATIVE_LDOUBLE; break; + default: + mem_datatype = FAIL; + } + + return mem_datatype; + +} + + +/***************************************************************************** + + Routine: test_file + + Description: Test a file for read/write - ability. + + Input: filename - Unix filename + + Output: function return, global variable - errno + +*****************************************************************************/ + +int test_file(char *filename,int oflag,mode_t mode) +{ + int fid; + + errno = 0; + + fid = open(filename, oflag, mode); + if (fid < 0) { + perror(filename); + } + close(fid); + + return errno; + +} + + +/***************************************************************************** + + Routine: test_dir + + Description: Test pathway to determine if it is a directory + + Input: path - pathname given + + Output: function return TRUE/FALSE + +*****************************************************************************/ + +int test_dir(path) + char *path; +{ + + struct stat buf; + struct stat *buf_ptr; + int idir; + + buf_ptr = &buf; + + idir = stat(path, buf_ptr); + if (idir < 0) { + if (errno == 2) { + return 0; + } else { + perror(path); + } + } + + return S_ISDIR(buf_ptr->st_mode); + +} + +/***************************************************************************** + + Routine: BuildFilename() + + Description: Build a filename with new extension + + Input: filename - present filename + ext - extension to root of filename + + Output: (filename:r).ext + +*****************************************************************************/ + +char *BuildFilename(char *filename, char *ext) +{ + /* build outgoing filename */ + + char *filename_out; + char *lastper_ptr, *lastdir_ptr; + int root_len; + + lastper_ptr = strrchr(filename,'.'); + lastdir_ptr = strrchr(filename,'/'); + + if ( lastper_ptr <= lastdir_ptr ) { /* no extension */ + root_len = strlen(filename); + } else { /* existing extension */ + root_len = (int)(lastper_ptr - filename); + } + + filename_out = (char *)HDmalloc(root_len + strlen(ext) + 2); + filename_out = strncpy(filename_out, filename, (size_t)root_len); + filename_out[root_len] = '\0'; + filename_out = strcat(filename_out,"."); + filename_out = strcat(filename_out,ext); + + return filename_out; +} + diff --git a/tools/h5toh4.h b/tools/h5toh4.h new file mode 100644 index 0000000..140fef0 --- /dev/null +++ b/tools/h5toh4.h @@ -0,0 +1,39 @@ +#ifndef _H5TOH4_H +#define _H5TOH4_H + +#include <hdf5.h> +#include <mfhdf.h> + +/* + * Copyright © 1998 NCSA + * All rights reserved. + * + * Programmer: Paul Harten <pharten@ncsa.uiuc.edu> + * Friday, October 16th, 1998 + * + * Purpose: Convert H5 files to H4 files. + */ + + +typedef struct op_data_t { + /* + * information being carried between iterations. + * + */ + + int32 hfile_id; + int32 vgroup_id; + int32 sd_id; + int32 sds_id; + int32 vdata_id; + int32 obj_idx; + +} op_data_t; + +#ifdef H5TOH4_DEBUG +#define DEBUG_PRINT(s1,s2,s3,n1) ( fprintf(stderr,s1,s2,s3,n1) ) +#else +#define DEBUG_PRINT(s1,s2,s3,n1) ( ) +#endif + +#endif |