diff options
48 files changed, 113 insertions, 1245 deletions
diff --git a/Makefile.in b/Makefile.in index bed7078..a47b9d9 100644 --- a/Makefile.in +++ b/Makefile.in @@ -328,7 +328,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/c++/Makefile.in b/c++/Makefile.in index de87fa5..e5aa783 100644 --- a/c++/Makefile.in +++ b/c++/Makefile.in @@ -488,7 +488,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/c++/examples/Makefile.in b/c++/examples/Makefile.in index 90dfed3..773f842 100644 --- a/c++/examples/Makefile.in +++ b/c++/examples/Makefile.in @@ -436,7 +436,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/c++/src/Makefile.in b/c++/src/Makefile.in index 3b71cb4..136c3a5 100644 --- a/c++/src/Makefile.in +++ b/c++/src/Makefile.in @@ -502,7 +502,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/c++/test/Makefile.in b/c++/test/Makefile.in index 49c08e4..c8edd4d 100644 --- a/c++/test/Makefile.in +++ b/c++/test/Makefile.in @@ -493,7 +493,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/config/cmake/libhdf5.settings.cmake.in b/config/cmake/libhdf5.settings.cmake.in index 0c0befa..a036ff8 100644 --- a/config/cmake/libhdf5.settings.cmake.in +++ b/config/cmake/libhdf5.settings.cmake.in @@ -65,4 +65,3 @@ Clear file buffers before write: @HDF5_Enable_Clear_File_Buffers@ Function Stack Tracing: @HDF5_ENABLE_CODESTACK@ Strict File Format Checks: @HDF5_STRICT_FORMAT_CHECKS@ Optimization Instrumentation: @HDF5_Enable_Instrument@ - Large File Support (LFS): @HDF5_ENABLE_LARGE_FILE@ @@ -1,5 +1,5 @@ #! /bin/sh -# From configure.ac Id: configure.ac 26174 2015-02-14 01:25:22Z acheng . +# From configure.ac Id: configure.ac 26178 2015-02-16 00:17:46Z hdftest . # Guess values for system-dependent variables and create Makefiles. # Generated by GNU Autoconf 2.69 for HDF5 1.8.15-snap11. # @@ -787,7 +787,6 @@ DIRECT_VFD HAVE_DMALLOC CODESTACK INSTRUMENT -LARGEFILE HDF5_HL CXX HDF_CXX @@ -905,8 +904,6 @@ enable_libtool_lock enable_static_exec enable_sharedlib_rpath enable_production -enable_largefile -enable_linux_lfs with_fnord with_dmalloc with_zlib @@ -1592,10 +1589,6 @@ Optional Features: --disable-sharedlib-rpath Disable use of the '=Wl,-rpath' linker option --enable-production Determines how to run the compiler. - --disable-largefile omit support for large files - --disable-linux-lfs Disable support for large (64-bit) files on Linux. - This option is deprecated in favor of - --disable-largefile. --enable-threadsafe Enable thread-safe capability --enable-debug=all Turn on debugging in all packages. One may also specify a comma-separated list of package names @@ -4059,7 +4052,6 @@ $as_echo "done" >&6; } ## HDF_CXX: whether C++ is enabled. Default no. ## CXX: C++ compiler. ## HDF5_HL: whether high-level library is enabled. Default is yes. -## LARGEFILE: whether largefile support is enabled. Default yes. ## INSTRUMENT: whether INSTRUMENT is enabled. No default set here. ## CODESTACK: whether CODESTACK is enabled. Default no. ## HAVE_DMALLOC: whether system has dmalloc support. Default no. @@ -4080,7 +4072,6 @@ $as_echo "done" >&6; } HDF_CXX=no HDF_CXX=no HDF5_HL=yes - LARGEFILE=yes CODESTACK=no HAVE_DMALLOC=no @@ -7944,16 +7935,14 @@ fi ## a parallel library even if configure wasn't ## able to find some header file or library that ## might be required. This is defined if the -## compiler looks like a parallel compiler (e.g., -## mpicc or mpcc) or if the user explicitly states +## user explicitly states ## that a parallel library is being built by supplying ## the `--enable-parallel' configure switch. ## ## PARALLEL -- This variable is set to a non-null value if -## configure thinks we're compiling a parallel -## version of the library. +## we're building a parallel version of the library. ## -## RUNSERIAL -- This is a command which will be prepended to +## RUNSERIAL -- This is a command which will be prepended to ## the executable name to run the executable using ## a single process. For serial versions of the ## library this will normally be empty. For parallel @@ -7979,146 +7968,6 @@ fi ## ---------------------------------------------------------------------- -## If the compiler is obviously a parallel compiler then we're building -## a parallel version of hdf5 and should define HAVE_PARALLEL. Furthermore, -## the name of the compiler might tell us how to run the resulting -## executable. For `mpicc' the executable should be run with `mpiexec' from -## the same directory as mpicc if it exists. -## -case "$CC_BASENAME" in - mpicc) - ## The mpich compiler. Use mpiexec from the same directory if it - ## exists. - PARALLEL=mpicc - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for mpiexec" >&5 -$as_echo_n "checking for mpiexec... " >&6; } - - ## Find the path where mpicc is located. - cmd="`echo $CC | cut -f1 -d' '`" - if (echo $cmd | grep / >/dev/null); then - path="`echo $cmd | sed 's/\(.*\)\/.*$/\1/'`" - else - for path in `echo $PATH | ${TR} ":" " "`; do - if test -x $path/$cmd; then - break - fi - done - fi - - ## Is there an mpiexec at that path? - if test -x $path/mpiexec; then - { $as_echo "$as_me:${as_lineno-$LINENO}: result: $path/mpiexec" >&5 -$as_echo "$path/mpiexec" >&6; } - RUNSERIAL="${RUNSERIAL:-none}" - - if test -z "$RUNPARALLEL"; then - RUNPARALLEL="$path/mpiexec -n \$\${NPROCS:=6}" - fi - else - { $as_echo "$as_me:${as_lineno-$LINENO}: result: none" >&5 -$as_echo "none" >&6; } - fi - ;; - - mpcc|mpcc_r) - ## The IBM compiler - PARALLEL="$CC_BASENAME" - ;; - - *) - ## Probably not a parallel compiler, but if `--enable-parallel' - ## is defined below then we're still building a parallel hdf5. - ;; -esac - -## ---------------------------------------------------------------------- -## If the Fortran compiler is obviously a parallel compiler then we're -## building a parallel version of hdf5 and should define HAVE_PARALLEL. -## Furthermore, the name of the compiler might tell us how to run the -## resulting executable. For `mpif90' the executable should be run with -## `mpiexec' from the same directory as mpif90 if it exists. -## - -if test "X$HDF_FORTRAN" = "Xyes" ; then - ## Change to the Fortran 90 language - ac_ext=${ac_fc_srcext-f} -ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' -ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' -ac_compiler_gnu=$ac_cv_fc_compiler_gnu - - - case "$FC" in - *mpif90*) - ## The Fortran mpich compiler. Use mpiexec from the same directory - ## if it exists. - PARALLEL=mpif90 - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for mpiexec" >&5 -$as_echo_n "checking for mpiexec... " >&6; } - - ## Find the path where mpif90 is located. - cmd=`echo $FC |cut -f1 -d' '` - if (echo $cmd |grep / >/dev/null); then - path="`echo $cmd |sed 's/\(.*\)\/.*$/\1/'`" - else - for path in `echo $PATH | ${TR} ":" " "`; do - if test -x $path/$cmd; then - break; - fi - done - fi - - ## Is there an mpiexec at that path? - if test -x $path/mpiexec; then - { $as_echo "$as_me:${as_lineno-$LINENO}: result: $path/mpiexec" >&5 -$as_echo "$path/mpiexec" >&6; } - RUNSERIAL="${RUNSERIAL:-none}" - - if test -z "$RUNPARALLEL"; then - RUNPARALLEL="$path/mpiexec -n \$\${NPROCS:=6}" - fi - else - { $as_echo "$as_me:${as_lineno-$LINENO}: result: none" >&5 -$as_echo "none" >&6; } - fi - ;; - - *mpxlf* | *mpxlf_r* | *mpxlf90* | *mpxlf90_r* | *mpxlf95* | *mpxlf95_r*) - ## The IBM compiler - PARALLEL="$FC" - ;; - - *) - ## Probably not a parallel compiler, but if `--enable-parallel' - ## is defined below then we're still building a parallel hdf5. - ;; - esac - - ## Change to the C language - ac_ext=c -ac_cpp='$CPP $CPPFLAGS' -ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' -ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' -ac_compiler_gnu=$ac_cv_c_compiler_gnu - -fi - -## ----------------------------------------------------------------------------- -## If shared libraries are being used with parallel, disable them, unless the -## user explicity enables them via the '--enable-shared' option. - -if test "X${enable_shared}" = "X" -a "X${enable_parallel}" = "Xyes"; then - echo ' shared libraries disabled in parallel' - enable_shared="no" -elif test "X${enable_shared}" = "Xyes" -a "X${enable_parallel}" = "Xyes"; then - echo ' shared libraries explicitly enabled by user' -elif test "X${enable_shared}" = "X" -a "X${PARALLEL}" != "X"; then - echo ' shared libraries disabled when a parallel compiler is being used' - enable_shared="no" -elif test "X${enable_shared}" = "Xyes" -a "X${PARALLEL}" != "X"; then - echo ' shared libraries explicitly enabled by user' -fi - -## ---------------------------------------------------------------------- ## Fortran libraries are not currently supported on Mac. Disable them. ## (this is overridable with --enable-unsupported). ## @@ -23235,111 +23084,15 @@ $as_echo "no" >&6; } fi ## ---------------------------------------------------------------------- -## Test for Largefile support. -## -{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if configure should try to set up large file support" >&5 -$as_echo_n "checking if configure should try to set up large file support... " >&6; } - -# Check whether --enable-largefile was given. -if test "${enable_largefile+set}" = set; then : - enableval=$enable_largefile; -fi - - -## The linux-lfs option is deprecated, but if it is used to disable -## largefile support on linux and the largefile option is not specified, -## then go ahead and disable large-file support. -case "$host_cpu-$host_vendor-$host_os" in - *linux*) - # Check whether --enable-linux-lfs was given. -if test "${enable_linux_lfs+set}" = set; then : - enableval=$enable_linux_lfs; -fi - - - if test "$enable_linux_lfs" = no; then - if test "$enable_largefile" != yes; then - enable_largefile=no - fi - fi - ;; -esac - -## If largefile support is enabled, then set up appropriate compiler options. -if test "$enable_largefile" != no; then - { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 -$as_echo "yes" >&6; } - - ## Check for needed compiler options. This check is pulled drectly - ## from autoconf's AC_SYS_LARGEFILE macro, as of Autoconf v2.65. - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for special C compiler options needed for large files" >&5 -$as_echo_n "checking for special C compiler options needed for large files... " >&6; } -if ${ac_cv_sys_largefile_CC+:} false; then : - $as_echo_n "(cached) " >&6 -else - ac_cv_sys_largefile_CC=no - if test "$GCC" != yes; then - ac_save_CC=$CC - while :; do - ## IRIX 6.2 and later do not support large files by default, - ## so use the C compiler's -n32 option if that helps. - cat confdefs.h - <<_ACEOF >conftest.$ac_ext -/* end confdefs.h. */ -#include <sys/types.h> - /* Check that off_t can represent 2**63 - 1 correctly. - We can't simply define LARGE_OFF_T to be 9223372036854775807, - since some C++ compilers masquerading as C compilers - incorrectly reject 9223372036854775807. */ -#define LARGE_OFF_T (((off_t) 1 << 62) - 1 + ((off_t) 1 << 62)) - int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721 - && LARGE_OFF_T % 2147483647 == 1) - ? 1 : -1]; -#ifdef FC_DUMMY_MAIN -#ifndef FC_DUMMY_MAIN_EQ_F77 -# ifdef __cplusplus - extern "C" -# endif - int FC_DUMMY_MAIN() { return 1; } -#endif -#endif -int -main () -{ - - ; - return 0; -} -_ACEOF - if ac_fn_c_try_compile "$LINENO"; then : - break -fi -rm -f core conftest.err conftest.$ac_objext - CC="$CC -n32" - if ac_fn_c_try_compile "$LINENO"; then : - ac_cv_sys_largefile_CC=' -n32'; break -fi -rm -f core conftest.err conftest.$ac_objext - break - done - CC=$ac_save_CC - rm -f conftest.$ac_ext - fi -fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_sys_largefile_CC" >&5 -$as_echo "$ac_cv_sys_largefile_CC" >&6; } - if test "$ac_cv_sys_largefile_CC" != no; then - CC=$CC$ac_cv_sys_largefile_CC - fi - - ## Use the macro _AC_SYS_LARGEFILE_MACRO_VALUE to test defines - ## that might need to be set for largefile support to behave - ## correctly. This macro is defined in acsite.m4 and overrides - ## the version provided by Autoconf (as of v2.65). The custom - ## macro additionally adds the appropriate defines to AM_CPPFLAGS - ## so that later configure checks have them visible. - - ## Check for _FILE_OFFSET_BITS - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for _FILE_OFFSET_BITS value needed for large files" >&5 +## Use the macro _AC_SYS_LARGEFILE_MACRO_VALUE to test defines +## that might need to be set for largefile support to behave +## correctly. This macro is defined in acsite.m4 and overrides +## the version provided by Autoconf (as of v2.65). The custom +## macro additionally adds the appropriate defines to AM_CPPFLAGS +## so that later configure checks have them visible. + +## Check for _FILE_OFFSET_BITS +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for _FILE_OFFSET_BITS value needed for large files" >&5 $as_echo_n "checking for _FILE_OFFSET_BITS value needed for large files... " >&6; } if ${ac_cv_sys_file_offset_bits+:} false; then : $as_echo_n "(cached) " >&6 @@ -23425,9 +23178,9 @@ _ACEOF esac rm -rf conftest* - ## Check for _LARGE_FILES - if test "$ac_cv_sys_file_offset_bits" = unknown; then - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for _LARGE_FILES value needed for large files" >&5 +## Check for _LARGE_FILES +if test "$ac_cv_sys_file_offset_bits" = unknown; then + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for _LARGE_FILES value needed for large files" >&5 $as_echo_n "checking for _LARGE_FILES value needed for large files... " >&6; } if ${ac_cv_sys_large_files+:} false; then : $as_echo_n "(cached) " >&6 @@ -23512,68 +23265,6 @@ _ACEOF AM_CPPFLAGS="-D_LARGE_FILES=$ac_cv_sys_large_files $AM_CPPFLAGS";; esac rm -rf conftest* - fi - - ## Now actually test to see if we can create large files after we've - ## checked for any needed defines. - { $as_echo "$as_me:${as_lineno-$LINENO}: checking if large (64-bit) files are supported on this system." >&5 -$as_echo_n "checking if large (64-bit) files are supported on this system.... " >&6; } - if ${hdf5_cv_have_lfs+:} false; then : - $as_echo_n "(cached) " >&6 -else - if test "$cross_compiling" = yes; then : - { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5 -$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} -as_fn_error $? "cannot run test program while cross compiling -See \`config.log' for more details" "$LINENO" 5; } -else - cat confdefs.h - <<_ACEOF >conftest.$ac_ext -/* end confdefs.h. */ - - #include <stdio.h> - #include <unistd.h> - #include <stdlib.h> - #include <fcntl.h> - #define BIG_FILE (off_t)0x80000000UL - int main(void) { - int fd; - if ((fd=open("test.conf", O_RDWR|O_TRUNC|O_CREAT, 0666)) < 0) exit(1); - if (lseek(fd, BIG_FILE, SEEK_SET)!=BIG_FILE) exit(1); - if (5!=write(fd, "hello", (size_t)5)) exit(1); - if (lseek(fd, 2*BIG_FILE, SEEK_SET) != 2*BIG_FILE) exit(1); - if (5!=write(fd, "hello", (size_t)5)) exit(1); - if (unlink("test.conf") < 0) exit(1); - exit(0); - } - -_ACEOF -if ac_fn_c_try_run "$LINENO"; then : - hdf5_cv_have_lfs=yes -else - hdf5_cv_have_lfs=no -fi -rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \ - conftest.$ac_objext conftest.beam conftest.$ac_ext -fi - -fi - - - if test "X${hdf5_cv_have_lfs}" = "Xyes"; then - { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 -$as_echo "yes" >&6; } - LARGEFILE="yes" - fi - if test "X${hdf5_cv_have_lfs}" = "Xno"; then - { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 -$as_echo "no" >&6; } - LARGEFILE="no" - fi - -else - LARGEFILE="no" - { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 -$as_echo "no" >&6; } fi ## ---------------------------------------------------------------------- @@ -23581,11 +23272,9 @@ fi ## case "$host_cpu-$host_vendor-$host_os" in *linux*) - ## If largefile support is enabled, then make available various - ## LFS-related routines using the following _LARGEFILE*_SOURCE macros. - if test "X$LARGEFILE" != "Xno"; then - AM_CPPFLAGS="-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS" - fi + ## Make available various LFS-related routines using the following + ## _LARGEFILE*_SOURCE macros. + AM_CPPFLAGS="-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS" ## Add POSIX support on Linux systems, so <features.h> defines ## __USE_POSIX, which is required to get the prototype for fdopen @@ -28232,10 +27921,7 @@ rm -f confcache ## What header files and libraries do we have to look for for parallel ## support? For the most part, search paths are already specified with -## CPPFLAGS and LDFLAGS or are known to the compiler. If the user says -## `--disable-parallel' but specifies a known parallel compiler (like mpicc -## or mpcc) then parallel support is enabled but configure doesn't search -## for any parallel header files or libraries. +## CPPFLAGS and LDFLAGS or are known to the compiler. ## # Check whether --enable-parallel was given. if test "${enable_parallel+set}" = set; then : @@ -28260,26 +27946,11 @@ if test "X${ALLOW_UNSUPPORTED}" != "Xyes"; then fi fi -## It's possible to build in parallel by specifying a parallel compiler -## without using the --enable-parallel flag. This isn't allowed with -## C++ or threadsafe, either, unless the --enable-unsupported flag -## has also been specified. -if test "X${ALLOW_UNSUPPORTED}" != "Xyes"; then - if test "X${PARALLEL}" != "X" -a "X${enable_cxx}" = "Xyes" ; then - as_fn_error $? "An MPI compiler is being used; --enable-cxx is not allowed. Use --enable-unsupported to override this error." "$LINENO" 5 - fi - if test "X${PARALLEL}" != "X" -a "X${THREADSAFE}" = "Xyes"; then - as_fn_error $? "An MPI compiler is being used; --enable-threadsafe is not allowed. Use --enable-unsupported to override this error." "$LINENO" 5 - fi -fi - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for parallel support files" >&5 $as_echo_n "checking for parallel support files... " >&6; } case "X-$enable_parallel" in X-|X-no|X-none) - ## Either we are not compiling for parallel or the header and - ## library files and locations are known to the compiler (this is - ## the case for a correct installation of mpicc for instance). + ## We are not compiling for parallel. { $as_echo "$as_me:${as_lineno-$LINENO}: result: skipped" >&5 $as_echo "skipped" >&6; } ;; @@ -28291,185 +27962,12 @@ $as_echo "skipped" >&6; } $as_echo "provided by compiler" >&6; } PARALLEL=yes - ## Try link a simple MPI program. If fail, try again with -lmpi and - ## -lmpich. + ## Try link a simple MPI program. + { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether a simple MPI-IO C program can be linked" >&5 +$as_echo_n "checking whether a simple MPI-IO C program can be linked... " >&6; } cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ - -#ifdef FC_DUMMY_MAIN -#ifndef FC_DUMMY_MAIN_EQ_F77 -# ifdef __cplusplus - extern "C" -# endif - int FC_DUMMY_MAIN() { return 1; } -#endif -#endif -int -main () -{ -MPI_Init() - ; - return 0; -} -_ACEOF -if ac_fn_c_try_link "$LINENO"; then : - -else - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lmpi" >&5 -$as_echo_n "checking for MPI_Init in -lmpi... " >&6; } -if ${ac_cv_lib_mpi_MPI_Init+:} false; then : - $as_echo_n "(cached) " >&6 -else - ac_check_lib_save_LIBS=$LIBS -LIBS="-lmpi $LIBS" -cat confdefs.h - <<_ACEOF >conftest.$ac_ext -/* end confdefs.h. */ - -/* Override any GCC internal prototype to avoid an error. - Use char because int might match the return type of a GCC - builtin and then its argument prototype would still apply. */ -#ifdef __cplusplus -extern "C" -#endif -char MPI_Init (); -#ifdef FC_DUMMY_MAIN -#ifndef FC_DUMMY_MAIN_EQ_F77 -# ifdef __cplusplus - extern "C" -# endif - int FC_DUMMY_MAIN() { return 1; } -#endif -#endif -int -main () -{ -return MPI_Init (); - ; - return 0; -} -_ACEOF -if ac_fn_c_try_link "$LINENO"; then : - ac_cv_lib_mpi_MPI_Init=yes -else - ac_cv_lib_mpi_MPI_Init=no -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext -LIBS=$ac_check_lib_save_LIBS -fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpi_MPI_Init" >&5 -$as_echo "$ac_cv_lib_mpi_MPI_Init" >&6; } -if test "x$ac_cv_lib_mpi_MPI_Init" = xyes; then : - cat >>confdefs.h <<_ACEOF -#define HAVE_LIBMPI 1 -_ACEOF - - LIBS="-lmpi $LIBS" - -else - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lmpich" >&5 -$as_echo_n "checking for MPI_Init in -lmpich... " >&6; } -if ${ac_cv_lib_mpich_MPI_Init+:} false; then : - $as_echo_n "(cached) " >&6 -else - ac_check_lib_save_LIBS=$LIBS -LIBS="-lmpich $LIBS" -cat confdefs.h - <<_ACEOF >conftest.$ac_ext -/* end confdefs.h. */ - -/* Override any GCC internal prototype to avoid an error. - Use char because int might match the return type of a GCC - builtin and then its argument prototype would still apply. */ -#ifdef __cplusplus -extern "C" -#endif -char MPI_Init (); -#ifdef FC_DUMMY_MAIN -#ifndef FC_DUMMY_MAIN_EQ_F77 -# ifdef __cplusplus - extern "C" -# endif - int FC_DUMMY_MAIN() { return 1; } -#endif -#endif -int -main () -{ -return MPI_Init (); - ; - return 0; -} -_ACEOF -if ac_fn_c_try_link "$LINENO"; then : - ac_cv_lib_mpich_MPI_Init=yes -else - ac_cv_lib_mpich_MPI_Init=no -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext -LIBS=$ac_check_lib_save_LIBS -fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpich_MPI_Init" >&5 -$as_echo "$ac_cv_lib_mpich_MPI_Init" >&6; } -if test "x$ac_cv_lib_mpich_MPI_Init" = xyes; then : - cat >>confdefs.h <<_ACEOF -#define HAVE_LIBMPICH 1 -_ACEOF - - LIBS="-lmpich $LIBS" - -else - PARALLEL=no -fi - -fi - -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext - - ## Then try link a simple MPI-IO program. If fail, try again with - ## -lmpio. - if test "X$PARALLEL" = "Xyes"; then - cat confdefs.h - <<_ACEOF >conftest.$ac_ext -/* end confdefs.h. */ - -#ifdef FC_DUMMY_MAIN -#ifndef FC_DUMMY_MAIN_EQ_F77 -# ifdef __cplusplus - extern "C" -# endif - int FC_DUMMY_MAIN() { return 1; } -#endif -#endif -int -main () -{ -MPI_File_open() - ; - return 0; -} -_ACEOF -if ac_fn_c_try_link "$LINENO"; then : - -else - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPI_File_open in -lmpio" >&5 -$as_echo_n "checking for MPI_File_open in -lmpio... " >&6; } -if ${ac_cv_lib_mpio_MPI_File_open+:} false; then : - $as_echo_n "(cached) " >&6 -else - ac_check_lib_save_LIBS=$LIBS -LIBS="-lmpio $LIBS" -cat confdefs.h - <<_ACEOF >conftest.$ac_ext -/* end confdefs.h. */ - -/* Override any GCC internal prototype to avoid an error. - Use char because int might match the return type of a GCC - builtin and then its argument prototype would still apply. */ -#ifdef __cplusplus -extern "C" -#endif -char MPI_File_open (); +#include <mpi.h> #ifdef FC_DUMMY_MAIN #ifndef FC_DUMMY_MAIN_EQ_F77 # ifdef __cplusplus @@ -28481,37 +27979,22 @@ char MPI_File_open (); int main () { -return MPI_File_open (); + MPI_Init(0, (void *)0); + MPI_File_open(0, (void *)0, 0, 0, (void *)0); ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : - ac_cv_lib_mpio_MPI_File_open=yes -else - ac_cv_lib_mpio_MPI_File_open=no -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext -LIBS=$ac_check_lib_save_LIBS -fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpio_MPI_File_open" >&5 -$as_echo "$ac_cv_lib_mpio_MPI_File_open" >&6; } -if test "x$ac_cv_lib_mpio_MPI_File_open" = xyes; then : - cat >>confdefs.h <<_ACEOF -#define HAVE_LIBMPIO 1 -_ACEOF - - LIBS="-lmpio $LIBS" - + { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +$as_echo "yes" >&6; } else - PARALLEL=no -fi - + { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 +$as_echo "no" >&6; } + as_fn_error $? "unable to link a simple MPI-IO C program" "$LINENO" 5 fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext - fi if test "X$HDF_FORTRAN" = "Xyes"; then ## Change to the Fortran 90 language @@ -28521,7 +28004,9 @@ ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest ac_compiler_gnu=$ac_cv_fc_compiler_gnu - ## Try link a simple MPI program. If fail, try again with -lmpi. + ## Try link a simple MPI program. + { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether a simple MPI-IO Fortran program can be linked" >&5 +$as_echo_n "checking whether a simple MPI-IO Fortran program can be linked... " >&6; } cat > conftest.$ac_ext <<_ACEOF program main @@ -28531,98 +28016,15 @@ ac_compiler_gnu=$ac_cv_fc_compiler_gnu end _ACEOF if ac_fn_fc_try_link "$LINENO"; then : - -else - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for mpi_file_open in -lmpi" >&5 -$as_echo_n "checking for mpi_file_open in -lmpi... " >&6; } -if ${ac_cv_lib_mpi_mpi_file_open+:} false; then : - $as_echo_n "(cached) " >&6 -else - ac_check_lib_save_LIBS=$LIBS -LIBS="-lmpi $LIBS" -cat > conftest.$ac_ext <<_ACEOF - program main - call mpi_file_open - end -_ACEOF -if ac_fn_fc_try_link "$LINENO"; then : - ac_cv_lib_mpi_mpi_file_open=yes -else - ac_cv_lib_mpi_mpi_file_open=no -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext -LIBS=$ac_check_lib_save_LIBS -fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpi_mpi_file_open" >&5 -$as_echo "$ac_cv_lib_mpi_mpi_file_open" >&6; } -if test "x$ac_cv_lib_mpi_mpi_file_open" = xyes; then : - cat >>confdefs.h <<_ACEOF -#define HAVE_LIBMPI 1 -_ACEOF - - LIBS="-lmpi $LIBS" - -else - PARALLEL=no -fi - -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext - - ## Then try link a simple MPI-IO program. If fail, try again with - ## -lmpio. - if test "X$PARALLEL" = "Xyes"; then - cat > conftest.$ac_ext <<_ACEOF - - program main - include 'mpif.h' - integer:: ierr - call mpi_file_open( ierr ) - end -_ACEOF -if ac_fn_fc_try_link "$LINENO"; then : - -else - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for mpi_file_open in -lmpio" >&5 -$as_echo_n "checking for mpi_file_open in -lmpio... " >&6; } -if ${ac_cv_lib_mpio_mpi_file_open+:} false; then : - $as_echo_n "(cached) " >&6 -else - ac_check_lib_save_LIBS=$LIBS -LIBS="-lmpio $LIBS" -cat > conftest.$ac_ext <<_ACEOF - program main - call mpi_file_open - end -_ACEOF -if ac_fn_fc_try_link "$LINENO"; then : - ac_cv_lib_mpio_mpi_file_open=yes -else - ac_cv_lib_mpio_mpi_file_open=no -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext -LIBS=$ac_check_lib_save_LIBS -fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpio_mpi_file_open" >&5 -$as_echo "$ac_cv_lib_mpio_mpi_file_open" >&6; } -if test "x$ac_cv_lib_mpio_mpi_file_open" = xyes; then : - cat >>confdefs.h <<_ACEOF -#define HAVE_LIBMPIO 1 -_ACEOF - - LIBS="-lmpio $LIBS" - + { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +$as_echo "yes" >&6; } else - PARALLEL=no -fi - + { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 +$as_echo "no" >&6; } + as_fn_error $? "unable to link a simple MPI-IO Fortran program" "$LINENO" 5 fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext - fi ## Change to the C language ac_ext=c @@ -28634,19 +28036,6 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu fi ## Set RUNPARALLEL to mpiexec if not set yet. - ## Check for building on Cray if RUNPARALLEL is not yet set by checking - ## for 'aprun' command (which is the parallel job launcher, like mpiexec). - if test "X$PARALLEL" = "Xyes" -a -z "$RUNPARALLEL"; then - ## Find the path where aprun is located. - for path in `echo $PATH | ${TR} ":" " "`; do - if test -x $path/aprun; then - RUNPARALLEL="aprun -q -n \$\${NPROCS:=6}" - break; - fi - done - fi - - ## Set RUNPARALLEL to mpiexec if not set yet. if test "X$PARALLEL" = "Xyes" -a -z "$RUNPARALLEL"; then RUNPARALLEL="mpiexec -n \$\${NPROCS:=6}" fi @@ -28683,39 +28072,6 @@ $as_echo_n "checking prefix for running in parallel... " >&6; } { $as_echo "$as_me:${as_lineno-$LINENO}: result: $RUNPARALLEL" >&5 $as_echo "$RUNPARALLEL" >&6; } - ## Check that we can link a simple MPI and MPI-IO application - { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether a simple MPI-IO program can be linked" >&5 -$as_echo_n "checking whether a simple MPI-IO program can be linked... " >&6; } - cat confdefs.h - <<_ACEOF >conftest.$ac_ext -/* end confdefs.h. */ - -#ifdef FC_DUMMY_MAIN -#ifndef FC_DUMMY_MAIN_EQ_F77 -# ifdef __cplusplus - extern "C" -# endif - int FC_DUMMY_MAIN() { return 1; } -#endif -#endif -int -main () -{ -MPI_Init(); MPI_File_open(); - ; - return 0; -} -_ACEOF -if ac_fn_c_try_link "$LINENO"; then : - { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 -$as_echo "yes" >&6; } -else - { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 -$as_echo "no" >&6; } - as_fn_error $? "unable to link a simple MPI-IO application" "$LINENO" 5 -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext - ## There *must* be some way to run in parallel even if it's just the ## word `none'. if test -z "$RUNPARALLEL"; then @@ -28723,7 +28079,8 @@ rm -f core conftest.err conftest.$ac_objext \ fi ## If RUNSERIAL or RUNPARALLEL is the word `none' then replace it with - ## the empty string. + ## the empty string. This means that no launch commands were requested, + ## so we will not use any launch commands. if test "X$RUNSERIAL" = "Xnone"; then RUNSERIAL="" fi @@ -28899,61 +28256,6 @@ else unset MPE fi - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPE_Init_mpi_io in -llmpe" >&5 -$as_echo_n "checking for MPE_Init_mpi_io in -llmpe... " >&6; } -if ${ac_cv_lib_lmpe_MPE_Init_mpi_io+:} false; then : - $as_echo_n "(cached) " >&6 -else - ac_check_lib_save_LIBS=$LIBS -LIBS="-llmpe $LIBS" -cat confdefs.h - <<_ACEOF >conftest.$ac_ext -/* end confdefs.h. */ - -/* Override any GCC internal prototype to avoid an error. - Use char because int might match the return type of a GCC - builtin and then its argument prototype would still apply. */ -#ifdef __cplusplus -extern "C" -#endif -char MPE_Init_mpi_io (); -#ifdef FC_DUMMY_MAIN -#ifndef FC_DUMMY_MAIN_EQ_F77 -# ifdef __cplusplus - extern "C" -# endif - int FC_DUMMY_MAIN() { return 1; } -#endif -#endif -int -main () -{ -return MPE_Init_mpi_io (); - ; - return 0; -} -_ACEOF -if ac_fn_c_try_link "$LINENO"; then : - ac_cv_lib_lmpe_MPE_Init_mpi_io=yes -else - ac_cv_lib_lmpe_MPE_Init_mpi_io=no -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext -LIBS=$ac_check_lib_save_LIBS -fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_lmpe_MPE_Init_mpi_io" >&5 -$as_echo "$ac_cv_lib_lmpe_MPE_Init_mpi_io" >&6; } -if test "x$ac_cv_lib_lmpe_MPE_Init_mpi_io" = xyes; then : - cat >>confdefs.h <<_ACEOF -#define HAVE_LIBLMPE 1 -_ACEOF - - LIBS="-llmpe $LIBS" - -else - unset MPE -fi - ;; *) case "$withval" in @@ -29074,62 +28376,6 @@ else LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset MPE fi - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPE_Init_mpi_io in -llmpe" >&5 -$as_echo_n "checking for MPE_Init_mpi_io in -llmpe... " >&6; } -if ${ac_cv_lib_lmpe_MPE_Init_mpi_io+:} false; then : - $as_echo_n "(cached) " >&6 -else - ac_check_lib_save_LIBS=$LIBS -LIBS="-llmpe $LIBS" -cat confdefs.h - <<_ACEOF >conftest.$ac_ext -/* end confdefs.h. */ - -/* Override any GCC internal prototype to avoid an error. - Use char because int might match the return type of a GCC - builtin and then its argument prototype would still apply. */ -#ifdef __cplusplus -extern "C" -#endif -char MPE_Init_mpi_io (); -#ifdef FC_DUMMY_MAIN -#ifndef FC_DUMMY_MAIN_EQ_F77 -# ifdef __cplusplus - extern "C" -# endif - int FC_DUMMY_MAIN() { return 1; } -#endif -#endif -int -main () -{ -return MPE_Init_mpi_io (); - ; - return 0; -} -_ACEOF -if ac_fn_c_try_link "$LINENO"; then : - ac_cv_lib_lmpe_MPE_Init_mpi_io=yes -else - ac_cv_lib_lmpe_MPE_Init_mpi_io=no -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext -LIBS=$ac_check_lib_save_LIBS -fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_lmpe_MPE_Init_mpi_io" >&5 -$as_echo "$ac_cv_lib_lmpe_MPE_Init_mpi_io" >&6; } -if test "x$ac_cv_lib_lmpe_MPE_Init_mpi_io" = xyes; then : - cat >>confdefs.h <<_ACEOF -#define HAVE_LIBLMPE 1 -_ACEOF - - LIBS="-llmpe $LIBS" - -else - LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset MPE -fi - - else { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPE_Init_log in -lmpe" >&5 $as_echo_n "checking for MPE_Init_log in -lmpe... " >&6; } @@ -29186,61 +28432,6 @@ else unset MPE fi - { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPE_Init_mpi_io in -llmpe" >&5 -$as_echo_n "checking for MPE_Init_mpi_io in -llmpe... " >&6; } -if ${ac_cv_lib_lmpe_MPE_Init_mpi_io+:} false; then : - $as_echo_n "(cached) " >&6 -else - ac_check_lib_save_LIBS=$LIBS -LIBS="-llmpe $LIBS" -cat confdefs.h - <<_ACEOF >conftest.$ac_ext -/* end confdefs.h. */ - -/* Override any GCC internal prototype to avoid an error. - Use char because int might match the return type of a GCC - builtin and then its argument prototype would still apply. */ -#ifdef __cplusplus -extern "C" -#endif -char MPE_Init_mpi_io (); -#ifdef FC_DUMMY_MAIN -#ifndef FC_DUMMY_MAIN_EQ_F77 -# ifdef __cplusplus - extern "C" -# endif - int FC_DUMMY_MAIN() { return 1; } -#endif -#endif -int -main () -{ -return MPE_Init_mpi_io (); - ; - return 0; -} -_ACEOF -if ac_fn_c_try_link "$LINENO"; then : - ac_cv_lib_lmpe_MPE_Init_mpi_io=yes -else - ac_cv_lib_lmpe_MPE_Init_mpi_io=no -fi -rm -f core conftest.err conftest.$ac_objext \ - conftest$ac_exeext conftest.$ac_ext -LIBS=$ac_check_lib_save_LIBS -fi -{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_lmpe_MPE_Init_mpi_io" >&5 -$as_echo "$ac_cv_lib_lmpe_MPE_Init_mpi_io" >&6; } -if test "x$ac_cv_lib_lmpe_MPE_Init_mpi_io" = xyes; then : - cat >>confdefs.h <<_ACEOF -#define HAVE_LIBLMPE 1 -_ACEOF - - LIBS="-llmpe $LIBS" - -else - unset MPE -fi - fi ;; esac diff --git a/configure.ac b/configure.ac index df13802..3c06572 100644 --- a/configure.ac +++ b/configure.ac @@ -165,7 +165,6 @@ AC_MSG_RESULT([done]) ## HDF_CXX: whether C++ is enabled. Default no. ## CXX: C++ compiler. ## HDF5_HL: whether high-level library is enabled. Default is yes. -## LARGEFILE: whether largefile support is enabled. Default yes. ## INSTRUMENT: whether INSTRUMENT is enabled. No default set here. ## CODESTACK: whether CODESTACK is enabled. Default no. ## HAVE_DMALLOC: whether system has dmalloc support. Default no. @@ -186,7 +185,6 @@ AC_SUBST([FC2003]) HDF_FORTRAN2003=no AC_SUBST([HDF_CXX]) HDF_CXX=no AC_SUBST([CXX]) HDF_CXX=no AC_SUBST([HDF5_HL]) HDF5_HL=yes -AC_SUBST([LARGEFILE]) LARGEFILE=yes AC_SUBST([INSTRUMENT]) AC_SUBST([CODESTACK]) CODESTACK=no AC_SUBST([HAVE_DMALLOC]) HAVE_DMALLOC=no @@ -783,16 +781,14 @@ fi ## a parallel library even if configure wasn't ## able to find some header file or library that ## might be required. This is defined if the -## compiler looks like a parallel compiler (e.g., -## mpicc or mpcc) or if the user explicitly states +## user explicitly states ## that a parallel library is being built by supplying ## the `--enable-parallel' configure switch. ## ## PARALLEL -- This variable is set to a non-null value if -## configure thinks we're compiling a parallel -## version of the library. +## we're building a parallel version of the library. ## -## RUNSERIAL -- This is a command which will be prepended to +## RUNSERIAL -- This is a command which will be prepended to ## the executable name to run the executable using ## a single process. For serial versions of the ## library this will normally be empty. For parallel @@ -818,131 +814,6 @@ AC_SUBST([RUNPARALLEL]) AC_SUBST([TESTPARALLEL]) ## ---------------------------------------------------------------------- -## If the compiler is obviously a parallel compiler then we're building -## a parallel version of hdf5 and should define HAVE_PARALLEL. Furthermore, -## the name of the compiler might tell us how to run the resulting -## executable. For `mpicc' the executable should be run with `mpiexec' from -## the same directory as mpicc if it exists. -## -case "$CC_BASENAME" in - mpicc) - ## The mpich compiler. Use mpiexec from the same directory if it - ## exists. - PARALLEL=mpicc - AC_MSG_CHECKING([for mpiexec]) - - ## Find the path where mpicc is located. - cmd="`echo $CC | cut -f1 -d' '`" - if (echo $cmd | grep / >/dev/null); then - path="`echo $cmd | sed 's/\(.*\)\/.*$/\1/'`" - else - for path in `echo $PATH | ${TR} ":" " "`; do - if test -x $path/$cmd; then - break - fi - done - fi - - ## Is there an mpiexec at that path? - if test -x $path/mpiexec; then - AC_MSG_RESULT([$path/mpiexec]) - RUNSERIAL="${RUNSERIAL:-none}" - - if test -z "$RUNPARALLEL"; then - RUNPARALLEL="$path/mpiexec -n \$\${NPROCS:=6}" - fi - else - AC_MSG_RESULT([none]) - fi - ;; - - mpcc|mpcc_r) - ## The IBM compiler - PARALLEL="$CC_BASENAME" - ;; - - *) - ## Probably not a parallel compiler, but if `--enable-parallel' - ## is defined below then we're still building a parallel hdf5. - ;; -esac - -## ---------------------------------------------------------------------- -## If the Fortran compiler is obviously a parallel compiler then we're -## building a parallel version of hdf5 and should define HAVE_PARALLEL. -## Furthermore, the name of the compiler might tell us how to run the -## resulting executable. For `mpif90' the executable should be run with -## `mpiexec' from the same directory as mpif90 if it exists. -## - -if test "X$HDF_FORTRAN" = "Xyes" ; then - ## Change to the Fortran 90 language - AC_LANG_PUSH(Fortran) - - case "$FC" in - *mpif90*) - ## The Fortran mpich compiler. Use mpiexec from the same directory - ## if it exists. - PARALLEL=mpif90 - AC_MSG_CHECKING([for mpiexec]) - - ## Find the path where mpif90 is located. - cmd=`echo $FC |cut -f1 -d' '` - if (echo $cmd |grep / >/dev/null); then - path="`echo $cmd |sed 's/\(.*\)\/.*$/\1/'`" - else - for path in `echo $PATH | ${TR} ":" " "`; do - if test -x $path/$cmd; then - break; - fi - done - fi - - ## Is there an mpiexec at that path? - if test -x $path/mpiexec; then - AC_MSG_RESULT([$path/mpiexec]) - RUNSERIAL="${RUNSERIAL:-none}" - - if test -z "$RUNPARALLEL"; then - RUNPARALLEL="$path/mpiexec -n \$\${NPROCS:=6}" - fi - else - AC_MSG_RESULT([none]) - fi - ;; - - *mpxlf* | *mpxlf_r* | *mpxlf90* | *mpxlf90_r* | *mpxlf95* | *mpxlf95_r*) - ## The IBM compiler - PARALLEL="$FC" - ;; - - *) - ## Probably not a parallel compiler, but if `--enable-parallel' - ## is defined below then we're still building a parallel hdf5. - ;; - esac - - ## Change to the C language - AC_LANG_POP(Fortran) -fi - -## ----------------------------------------------------------------------------- -## If shared libraries are being used with parallel, disable them, unless the -## user explicity enables them via the '--enable-shared' option. - -if test "X${enable_shared}" = "X" -a "X${enable_parallel}" = "Xyes"; then - echo ' shared libraries disabled in parallel' - enable_shared="no" -elif test "X${enable_shared}" = "Xyes" -a "X${enable_parallel}" = "Xyes"; then - echo ' shared libraries explicitly enabled by user' -elif test "X${enable_shared}" = "X" -a "X${PARALLEL}" != "X"; then - echo ' shared libraries disabled when a parallel compiler is being used' - enable_shared="no" -elif test "X${enable_shared}" = "Xyes" -a "X${PARALLEL}" != "X"; then - echo ' shared libraries explicitly enabled by user' -fi - -## ---------------------------------------------------------------------- ## Fortran libraries are not currently supported on Mac. Disable them. ## (this is overridable with --enable-unsupported). ## @@ -1367,116 +1238,25 @@ if test "X${enable_shared}" = "Xyes"; then fi ## ---------------------------------------------------------------------- -## Test for Largefile support. -## -AC_MSG_CHECKING([if configure should try to set up large file support]) - -AC_ARG_ENABLE([largefile], - [AS_HELP_STRING([--disable-largefile], - [omit support for large files])]) - -## The linux-lfs option is deprecated, but if it is used to disable -## largefile support on linux and the largefile option is not specified, -## then go ahead and disable large-file support. -case "$host_cpu-$host_vendor-$host_os" in - *linux*) - AC_ARG_ENABLE([linux-lfs], - [AS_HELP_STRING([--disable-linux-lfs], - [Disable support for large (64-bit) - files on Linux. This option is - deprecated in favor of - --disable-largefile.])]) - - if test "$enable_linux_lfs" = no; then - if test "$enable_largefile" != yes; then - enable_largefile=no - fi - fi - ;; -esac - -## If largefile support is enabled, then set up appropriate compiler options. -if test "$enable_largefile" != no; then - AC_MSG_RESULT([yes]) - - ## Check for needed compiler options. This check is pulled drectly - ## from autoconf's AC_SYS_LARGEFILE macro, as of Autoconf v2.65. - AC_CACHE_CHECK([for special C compiler options needed for large files], - ac_cv_sys_largefile_CC, - [ac_cv_sys_largefile_CC=no - if test "$GCC" != yes; then - ac_save_CC=$CC - while :; do - ## IRIX 6.2 and later do not support large files by default, - ## so use the C compiler's -n32 option if that helps. - AC_LANG_CONFTEST([AC_LANG_PROGRAM([_AC_SYS_LARGEFILE_TEST_INCLUDES])]) - AC_COMPILE_IFELSE([], [break]) - CC="$CC -n32" - AC_COMPILE_IFELSE([], [ac_cv_sys_largefile_CC=' -n32'; break]) - break - done - CC=$ac_save_CC - rm -f conftest.$ac_ext - fi]) - if test "$ac_cv_sys_largefile_CC" != no; then - CC=$CC$ac_cv_sys_largefile_CC - fi - - ## Use the macro _AC_SYS_LARGEFILE_MACRO_VALUE to test defines - ## that might need to be set for largefile support to behave - ## correctly. This macro is defined in acsite.m4 and overrides - ## the version provided by Autoconf (as of v2.65). The custom - ## macro additionally adds the appropriate defines to AM_CPPFLAGS - ## so that later configure checks have them visible. - - ## Check for _FILE_OFFSET_BITS - _AC_SYS_LARGEFILE_MACRO_VALUE([_FILE_OFFSET_BITS], [64], - [ac_cv_sys_file_offset_bits], - [Number of bits in a file offset, on hosts where this is settable.], +## Use the macro _AC_SYS_LARGEFILE_MACRO_VALUE to test defines +## that might need to be set for largefile support to behave +## correctly. This macro is defined in acsite.m4 and overrides +## the version provided by Autoconf (as of v2.65). The custom +## macro additionally adds the appropriate defines to AM_CPPFLAGS +## so that later configure checks have them visible. + +## Check for _FILE_OFFSET_BITS +_AC_SYS_LARGEFILE_MACRO_VALUE([_FILE_OFFSET_BITS], [64], + [ac_cv_sys_file_offset_bits], + [Number of bits in a file offset, on hosts where this is settable.], + [_AC_SYS_LARGEFILE_TEST_INCLUDES]) + +## Check for _LARGE_FILES +if test "$ac_cv_sys_file_offset_bits" = unknown; then + _AC_SYS_LARGEFILE_MACRO_VALUE([_LARGE_FILES], [1], + [ac_cv_sys_large_files], + [Define for large files, on AIX-style hosts.], [_AC_SYS_LARGEFILE_TEST_INCLUDES]) - - ## Check for _LARGE_FILES - if test "$ac_cv_sys_file_offset_bits" = unknown; then - _AC_SYS_LARGEFILE_MACRO_VALUE([_LARGE_FILES], [1], - [ac_cv_sys_large_files], - [Define for large files, on AIX-style hosts.], - [_AC_SYS_LARGEFILE_TEST_INCLUDES]) - fi - - ## Now actually test to see if we can create large files after we've - ## checked for any needed defines. - AC_MSG_CHECKING([if large (64-bit) files are supported on this system.]) - AC_CACHE_VAL([hdf5_cv_have_lfs], - [AC_TRY_RUN([ - #include <stdio.h> - #include <unistd.h> - #include <stdlib.h> - #include <fcntl.h> - #define BIG_FILE (off_t)0x80000000UL - int main(void) { - int fd; - if ((fd=open("test.conf", O_RDWR|O_TRUNC|O_CREAT, 0666)) < 0) exit(1); - if (lseek(fd, BIG_FILE, SEEK_SET)!=BIG_FILE) exit(1); - if (5!=write(fd, "hello", (size_t)5)) exit(1); - if (lseek(fd, 2*BIG_FILE, SEEK_SET) != 2*BIG_FILE) exit(1); - if (5!=write(fd, "hello", (size_t)5)) exit(1); - if (unlink("test.conf") < 0) exit(1); - exit(0); - } - ],[hdf5_cv_have_lfs=yes],[hdf5_cv_have_lfs=no],)]) - - if test "X${hdf5_cv_have_lfs}" = "Xyes"; then - AC_MSG_RESULT([yes]) - LARGEFILE="yes" - fi - if test "X${hdf5_cv_have_lfs}" = "Xno"; then - AC_MSG_RESULT([no]) - LARGEFILE="no" - fi - -else - LARGEFILE="no" - AC_MSG_RESULT([no]) fi ## ---------------------------------------------------------------------- @@ -1484,11 +1264,9 @@ fi ## case "$host_cpu-$host_vendor-$host_os" in *linux*) - ## If largefile support is enabled, then make available various - ## LFS-related routines using the following _LARGEFILE*_SOURCE macros. - if test "X$LARGEFILE" != "Xno"; then - AM_CPPFLAGS="-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS" - fi + ## Make available various LFS-related routines using the following + ## _LARGEFILE*_SOURCE macros. + AM_CPPFLAGS="-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS" ## Add POSIX support on Linux systems, so <features.h> defines ## __USE_POSIX, which is required to get the prototype for fdopen @@ -2657,10 +2435,7 @@ AC_CACHE_SAVE ## What header files and libraries do we have to look for for parallel ## support? For the most part, search paths are already specified with -## CPPFLAGS and LDFLAGS or are known to the compiler. If the user says -## `--disable-parallel' but specifies a known parallel compiler (like mpicc -## or mpcc) then parallel support is enabled but configure doesn't search -## for any parallel header files or libraries. +## CPPFLAGS and LDFLAGS or are known to the compiler. ## AC_ARG_ENABLE([parallel], [AS_HELP_STRING([--enable-parallel], @@ -2683,25 +2458,10 @@ if test "X${ALLOW_UNSUPPORTED}" != "Xyes"; then fi fi -## It's possible to build in parallel by specifying a parallel compiler -## without using the --enable-parallel flag. This isn't allowed with -## C++ or threadsafe, either, unless the --enable-unsupported flag -## has also been specified. -if test "X${ALLOW_UNSUPPORTED}" != "Xyes"; then - if test "X${PARALLEL}" != "X" -a "X${enable_cxx}" = "Xyes" ; then - AC_MSG_ERROR([An MPI compiler is being used; --enable-cxx is not allowed. Use --enable-unsupported to override this error.]) - fi - if test "X${PARALLEL}" != "X" -a "X${THREADSAFE}" = "Xyes"; then - AC_MSG_ERROR([An MPI compiler is being used; --enable-threadsafe is not allowed. Use --enable-unsupported to override this error.]) - fi -fi - AC_MSG_CHECKING([for parallel support files]) case "X-$enable_parallel" in X-|X-no|X-none) - ## Either we are not compiling for parallel or the header and - ## library files and locations are known to the compiler (this is - ## the case for a correct installation of mpicc for instance). + ## We are not compiling for parallel. AC_MSG_RESULT([skipped]) ;; @@ -2711,62 +2471,36 @@ case "X-$enable_parallel" in AC_MSG_RESULT([provided by compiler]) PARALLEL=yes - ## Try link a simple MPI program. If fail, try again with -lmpi and - ## -lmpich. - AC_TRY_LINK(, [MPI_Init()],, - [AC_CHECK_LIB([mpi], [MPI_Init],, - [AC_CHECK_LIB([mpich], [MPI_Init],, [PARALLEL=no])])]) - - ## Then try link a simple MPI-IO program. If fail, try again with - ## -lmpio. - if test "X$PARALLEL" = "Xyes"; then - AC_TRY_LINK(, [MPI_File_open()],, - [AC_CHECK_LIB([mpio], [MPI_File_open],, [PARALLEL=no])]) - fi + ## Try link a simple MPI program. + AC_MSG_CHECKING([whether a simple MPI-IO C program can be linked]) + AC_LINK_IFELSE([AC_LANG_PROGRAM([[#include <mpi.h>]], + [[ MPI_Init(0, (void *)0); + MPI_File_open(0, (void *)0, 0, 0, (void *)0);]])], + [AC_MSG_RESULT([yes])], + [AC_MSG_RESULT([no]) + AC_MSG_ERROR([unable to link a simple MPI-IO C program])]) if test "X$HDF_FORTRAN" = "Xyes"; then ## Change to the Fortran 90 language AC_LANG_PUSH(Fortran) - ## Try link a simple MPI program. If fail, try again with -lmpi. + ## Try link a simple MPI program. + AC_MSG_CHECKING([whether a simple MPI-IO Fortran program can be linked]) AC_LINK_IFELSE([ program main include 'mpif.h' integer:: ierr call mpi_file_open( ierr ) - end],, - [AC_CHECK_LIB([mpi], [mpi_file_open],, [PARALLEL=no])]) - - ## Then try link a simple MPI-IO program. If fail, try again with - ## -lmpio. - if test "X$PARALLEL" = "Xyes"; then - AC_LINK_IFELSE([ - program main - include 'mpif.h' - integer:: ierr - call mpi_file_open( ierr ) - end],, - [AC_CHECK_LIB([mpio], [mpi_file_open],, [PARALLEL=no])]) - fi + end], + [AC_MSG_RESULT([yes])], + [AC_MSG_RESULT([no]) + AC_MSG_ERROR([unable to link a simple MPI-IO Fortran program])]) ## Change to the C language AC_LANG_POP(Fortran) fi ## Set RUNPARALLEL to mpiexec if not set yet. - ## Check for building on Cray if RUNPARALLEL is not yet set by checking - ## for 'aprun' command (which is the parallel job launcher, like mpiexec). - if test "X$PARALLEL" = "Xyes" -a -z "$RUNPARALLEL"; then - ## Find the path where aprun is located. - for path in `echo $PATH | ${TR} ":" " "`; do - if test -x $path/aprun; then - RUNPARALLEL="aprun -q -n \$\${NPROCS:=6}" - break; - fi - done - fi - - ## Set RUNPARALLEL to mpiexec if not set yet. if test "X$PARALLEL" = "Xyes" -a -z "$RUNPARALLEL"; then RUNPARALLEL="mpiexec -n \$\${NPROCS:=6}" fi @@ -2796,13 +2530,6 @@ if test -n "$PARALLEL"; then AC_MSG_CHECKING([prefix for running in parallel]) AC_MSG_RESULT([$RUNPARALLEL]) - ## Check that we can link a simple MPI and MPI-IO application - AC_MSG_CHECKING([whether a simple MPI-IO program can be linked]) - AC_TRY_LINK(, [MPI_Init(); MPI_File_open();], - [AC_MSG_RESULT([yes])], - [AC_MSG_RESULT([no]) - AC_MSG_ERROR([unable to link a simple MPI-IO application])]) - ## There *must* be some way to run in parallel even if it's just the ## word `none'. if test -z "$RUNPARALLEL"; then @@ -2810,7 +2537,8 @@ if test -n "$PARALLEL"; then fi ## If RUNSERIAL or RUNPARALLEL is the word `none' then replace it with - ## the empty string. + ## the empty string. This means that no launch commands were requested, + ## so we will not use any launch commands. if test "X$RUNSERIAL" = "Xnone"; then RUNSERIAL="" fi @@ -2861,7 +2589,6 @@ if test -n "$PARALLEL"; then X-yes) AC_CHECK_HEADERS([mpe.h],, [unset MPE]) AC_CHECK_LIB([mpe], [MPE_Init_log],, [unset MPE]) - AC_CHECK_LIB([lmpe], [MPE_Init_mpi_io],, [unset MPE]) ;; *) case "$withval" in @@ -2903,12 +2630,8 @@ if test -n "$PARALLEL"; then AM_LDFLAGS="$AM_LDFLAGS -L$mpe_lib" AC_CHECK_LIB([mpe], [MPE_Init_log],, [LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset MPE]) - AC_CHECK_LIB([lmpe], [MPE_Init_mpi_io],, - [LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset MPE]) - else AC_CHECK_LIB([mpe], [MPE_Init_log],, [unset MPE]) - AC_CHECK_LIB([lmpe], [MPE_Init_mpi_io],, [unset MPE]) fi ;; esac diff --git a/examples/Makefile.in b/examples/Makefile.in index 71a9b4c..8209e3f 100644 --- a/examples/Makefile.in +++ b/examples/Makefile.in @@ -436,7 +436,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/fortran/Makefile.in b/fortran/Makefile.in index 4d8abdc..1bc48c0 100644 --- a/fortran/Makefile.in +++ b/fortran/Makefile.in @@ -492,7 +492,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/fortran/examples/Makefile.in b/fortran/examples/Makefile.in index b9b5efb..b6998e6 100644 --- a/fortran/examples/Makefile.in +++ b/fortran/examples/Makefile.in @@ -444,7 +444,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/fortran/src/Makefile.in b/fortran/src/Makefile.in index 1fede4d..02b9fa1 100644 --- a/fortran/src/Makefile.in +++ b/fortran/src/Makefile.in @@ -553,7 +553,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/fortran/test/Makefile.in b/fortran/test/Makefile.in index ca91cf5..2140faa 100644 --- a/fortran/test/Makefile.in +++ b/fortran/test/Makefile.in @@ -562,7 +562,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/fortran/testpar/Makefile.in b/fortran/testpar/Makefile.in index 583b6dc..18d64bf 100644 --- a/fortran/testpar/Makefile.in +++ b/fortran/testpar/Makefile.in @@ -488,7 +488,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/Makefile.in b/hl/Makefile.in index cda0122..bb7e708 100644 --- a/hl/Makefile.in +++ b/hl/Makefile.in @@ -492,7 +492,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in index 3839814..c473865 100644 --- a/hl/c++/Makefile.in +++ b/hl/c++/Makefile.in @@ -488,7 +488,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in index 5712043..a538c23 100644 --- a/hl/c++/examples/Makefile.in +++ b/hl/c++/examples/Makefile.in @@ -435,7 +435,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in index 482d8da..664086f 100644 --- a/hl/c++/src/Makefile.in +++ b/hl/c++/src/Makefile.in @@ -494,7 +494,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in index f6bd246..f5f2b9b 100644 --- a/hl/c++/test/Makefile.in +++ b/hl/c++/test/Makefile.in @@ -491,7 +491,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in index 6bbf493..005ef91 100644 --- a/hl/examples/Makefile.in +++ b/hl/examples/Makefile.in @@ -435,7 +435,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in index 8fe9e35..3578877 100644 --- a/hl/fortran/Makefile.in +++ b/hl/fortran/Makefile.in @@ -492,7 +492,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in index 1051658..ff614a8 100644 --- a/hl/fortran/examples/Makefile.in +++ b/hl/fortran/examples/Makefile.in @@ -435,7 +435,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in index 97ce320..74feca2 100644 --- a/hl/fortran/src/Makefile.in +++ b/hl/fortran/src/Makefile.in @@ -509,7 +509,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in index 4a929a6..ff2ecdc 100644 --- a/hl/fortran/test/Makefile.in +++ b/hl/fortran/test/Makefile.in @@ -500,7 +500,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in index 5f7cb2c..1ad3c1a 100644 --- a/hl/src/Makefile.in +++ b/hl/src/Makefile.in @@ -490,7 +490,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in index a002482..e329566 100644 --- a/hl/test/Makefile.in +++ b/hl/test/Makefile.in @@ -527,7 +527,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in index a34e225..7f60940e 100644 --- a/hl/tools/Makefile.in +++ b/hl/tools/Makefile.in @@ -489,7 +489,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in index 1c9be68..aedefdd 100644 --- a/hl/tools/gif2h5/Makefile.in +++ b/hl/tools/gif2h5/Makefile.in @@ -503,7 +503,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/src/H5config.h.in b/src/H5config.h.in index daf7d0d..cc8a59c 100644 --- a/src/H5config.h.in +++ b/src/H5config.h.in @@ -196,24 +196,12 @@ /* Define to 1 if you have the `dmalloc' library (-ldmalloc). */ #undef HAVE_LIBDMALLOC -/* Define to 1 if you have the `lmpe' library (-llmpe). */ -#undef HAVE_LIBLMPE - /* Define to 1 if you have the `m' library (-lm). */ #undef HAVE_LIBM /* Define to 1 if you have the `mpe' library (-lmpe). */ #undef HAVE_LIBMPE -/* Define to 1 if you have the `mpi' library (-lmpi). */ -#undef HAVE_LIBMPI - -/* Define to 1 if you have the `mpich' library (-lmpich). */ -#undef HAVE_LIBMPICH - -/* Define to 1 if you have the `mpio' library (-lmpio). */ -#undef HAVE_LIBMPIO - /* Define to 1 if you have the `nsl' library (-lnsl). */ #undef HAVE_LIBNSL diff --git a/src/H5private.h b/src/H5private.h index 3f0fccf..b4929e7 100644 --- a/src/H5private.h +++ b/src/H5private.h @@ -211,10 +211,9 @@ #define eventa(func_name) h5_mpe_eventa #define eventb(func_name) h5_mpe_eventb #define MPE_LOG_VARS \ - static int h5_mpe_eventa = -1; \ - static int h5_mpe_eventb = -1; \ - static char p_event_start[128]; \ - static char p_event_end[128]; + static int eventa(FUNC) = -1; \ + static int eventb(FUNC) = -1; \ + char p_event_start[128]; /* Hardwire the color to "red", since that's what all the routines are using * now. In the future, if we want to change that color for a given routine, @@ -223,19 +222,18 @@ * color information down to the BEGIN_MPE_LOG macro (which should have a new * BEGIN_MPE_LOG_COLOR variant). -QAK */ + #define BEGIN_MPE_LOG \ - if(H5_MPEinit_g) { \ - if(h5_mpe_eventa == -1 && h5_mpe_eventb == -1) { \ - const char *p_color = "red"; \ - \ - h5_mpe_eventa = MPE_Log_get_event_number(); \ - h5_mpe_eventb = MPE_Log_get_event_number(); \ - HDsnprintf(p_event_start, sizeof(p_event_start) - 1, "start_%s", FUNC); \ - HDsnprintf(p_event_end, sizeof(p_event_end) - 1, "end_%s", FUNC); \ - MPE_Describe_state(h5_mpe_eventa, h5_mpe_eventb, (char *)FUNC, (char *)p_color); \ - } \ - MPE_Log_event(h5_mpe_eventa, 0, p_event_start); \ - } + if (H5_MPEinit_g){ \ + sprintf(p_event_start, "start %s", FUNC); \ + if (eventa(FUNC) == -1 && eventb(FUNC) == -1) { \ + const char* p_color = "red"; \ + eventa(FUNC)=MPE_Log_get_event_number(); \ + eventb(FUNC)=MPE_Log_get_event_number(); \ + MPE_Describe_state(eventa(FUNC), eventb(FUNC), FUNC, p_color); \ + } \ + MPE_Log_event(eventa(FUNC), 0, p_event_start); \ + } /*------------------------------------------------------------------------ @@ -245,8 +243,8 @@ * Programmer: Long Wang */ #define FINISH_MPE_LOG \ - if(H5_MPEinit_g) { \ - MPE_Log_event(h5_mpe_eventb, 0, p_event_end); \ + if (H5_MPEinit_g) { \ + MPE_Log_event(eventb(FUNC), 0, FUNC); \ } #else /* H5_HAVE_MPE */ @@ -1845,7 +1843,7 @@ static herr_t H5_INTERFACE_INIT_FUNC(void); /* Local variables for API routines */ #define FUNC_ENTER_API_VARS \ - MPE_LOG_VARS \ + MPE_LOG_VARS \ H5TRACE_DECL #define FUNC_ENTER_API_COMMON \ diff --git a/src/Makefile.in b/src/Makefile.in index f6914ae..a57646c 100644 --- a/src/Makefile.in +++ b/src/Makefile.in @@ -548,7 +548,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/src/libhdf5.settings.in b/src/libhdf5.settings.in index 0402ffa..f25b850 100644 --- a/src/libhdf5.settings.in +++ b/src/libhdf5.settings.in @@ -71,4 +71,3 @@ Clear file buffers before write: @CLEARFILEBUF@ Function Stack Tracing: @CODESTACK@ Strict File Format Checks: @STRICT_FORMAT_CHECKS@ Optimization Instrumentation: @INSTRUMENT@ - Large File Support (LFS): @LARGEFILE@ diff --git a/test/Makefile.in b/test/Makefile.in index 2235cef..0bee69f 100644 --- a/test/Makefile.in +++ b/test/Makefile.in @@ -858,7 +858,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/testpar/Makefile.in b/testpar/Makefile.in index dc5b6b1..2f4d1cf 100644 --- a/testpar/Makefile.in +++ b/testpar/Makefile.in @@ -509,7 +509,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/testpar/t_pflush2.c b/testpar/t_pflush2.c index a570d4c..7f8a23f 100644 --- a/testpar/t_pflush2.c +++ b/testpar/t_pflush2.c @@ -101,13 +101,17 @@ check_file(char* name, hid_t fapl) if(H5Dclose(dset) < 0) goto error; if(H5Fclose(file) < 0) goto error; if(H5Pclose(plist) < 0) goto error; + if(H5Sclose(space) < 0) goto error; return 0; error: H5E_BEGIN_TRY { - H5Fclose(file); H5Pclose(plist); + H5Gclose(groups); + H5Dclose(dset); + H5Fclose(file); + H5Sclose(space); } H5E_END_TRY; return 1; } @@ -206,6 +210,9 @@ main(int argc, char* argv[]) puts(" Test not compatible with current Virtual File Driver"); } + /* close HDF5 library */ + H5close(); + MPI_Finalize(); return 0; diff --git a/tools/Makefile.in b/tools/Makefile.in index c4bf941..466294c 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -489,7 +489,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in index 76573a0..6248394 100644 --- a/tools/h5copy/Makefile.in +++ b/tools/h5copy/Makefile.in @@ -497,7 +497,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in index 6a8d2ac..4ec41af 100644 --- a/tools/h5diff/Makefile.in +++ b/tools/h5diff/Makefile.in @@ -504,7 +504,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in index 8cb1661..f5689e6 100644 --- a/tools/h5dump/Makefile.in +++ b/tools/h5dump/Makefile.in @@ -503,7 +503,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in index d3b0185..a611304 100644 --- a/tools/h5import/Makefile.in +++ b/tools/h5import/Makefile.in @@ -497,7 +497,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in index d0c8f16..5aa68c6 100644 --- a/tools/h5jam/Makefile.in +++ b/tools/h5jam/Makefile.in @@ -509,7 +509,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in index 2c4fe10..f3be33e 100644 --- a/tools/h5ls/Makefile.in +++ b/tools/h5ls/Makefile.in @@ -489,7 +489,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index 50e7341..441df41 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -521,7 +521,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in index 32b6d4c..c78e95b 100644 --- a/tools/h5stat/Makefile.in +++ b/tools/h5stat/Makefile.in @@ -499,7 +499,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in index b2afb07..bfc73ec 100644 --- a/tools/lib/Makefile.in +++ b/tools/lib/Makefile.in @@ -486,7 +486,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in index 1160938..99da78f 100644 --- a/tools/misc/Makefile.in +++ b/tools/misc/Makefile.in @@ -524,7 +524,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/perform/Makefile.in b/tools/perform/Makefile.in index 24aa8be..50930e0 100644 --- a/tools/perform/Makefile.in +++ b/tools/perform/Makefile.in @@ -528,7 +528,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ INSTRUMENT = @INSTRUMENT@ INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ -LARGEFILE = @LARGEFILE@ LD = @LD@ LDFLAGS = @LDFLAGS@ LIBOBJS = @LIBOBJS@ diff --git a/tools/perform/perf.c b/tools/perform/perf.c index 7d329f0..58db6cc 100644 --- a/tools/perform/perf.c +++ b/tools/perform/perf.c @@ -390,7 +390,10 @@ die_jar_jar_die: free(tmp); if (opt_correct) free(tmp2); - + + /* close HDF5 library */ + H5close(); + MPI_Finalize(); return(0); |