diff options
| -rw-r--r-- | release_docs/RELEASE.txt | 31 | ||||
| -rw-r--r-- | tools/h5diff/CMakeLists.txt | 1 | ||||
| -rw-r--r-- | tools/h5diff/h5diffgentest.c | 59 | ||||
| -rw-r--r-- | tools/h5diff/testfiles/h5diff_221.txt | 6 | ||||
| -rw-r--r-- | tools/h5diff/testfiles/h5diff_222.txt | 6 | ||||
| -rw-r--r-- | tools/h5diff/testfiles/non_comparables1.h5 | bin | 6408 -> 6568 bytes | |||
| -rw-r--r-- | tools/h5diff/testfiles/non_comparables2.h5 | bin | 6408 -> 6584 bytes | |||
| -rwxr-xr-x | tools/h5diff/testh5diff.sh | 3 | ||||
| -rw-r--r-- | tools/lib/h5diff_attr.c | 4 | ||||
| -rw-r--r-- | tools/lib/h5diff_util.c | 31 |
10 files changed, 95 insertions, 46 deletions
diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index 528361a..844f5ab 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -624,24 +624,27 @@ Bug Fixes since HDF5-1.8.0 release Tools ----- - - Fixed h5diff to display all the comparable object and attribute - regardless of non-comparables. HDFFV-7693 (JKM 09/16/2011) - - Fixed h5repack to update values of references(object and region) of - attributes in h5repack for 1) references, 2) ARRAY of references, - 3) VLEN of references, and 4) COMPOUND of references. - (JIRA HDF5 5932) PC -2011/09/14 + - h5diff: fixed segfault over non-comparable attribute with different + dimention or rank, along with '-c' option to display details. + HDFFV-7770 (JKM 2011/10/24) + - Fixed h5diff to display all the comparable object and attribute + regardless of non-comparables. HDFFV-7693 (JKM 2011/09/16) + - Fixed h5repack to update values of references(object and region) of + attributes in h5repack for 1) references, 2) ARRAY of references, + 3) VLEN of references, and 4) COMPOUND of references. + (JIRA HDF5 5932) PC -2011/09/14 - h5diff: fixed segfault over dataset with container types (array,lven) with multiple nested compound types. (ex: compound->array->compound, compound->vlen->compound) - HDFFV-7712 JKM (09/01/2011) + HDFFV-7712 JKM (2011/09/01) - h5repack: added macro to handle failure in H5Dread/write when memory allocation failed inside the library. (PC -- 2011/08/19) - Fixed h5jam not to allow specifying an HDF5 formatted file as input file for -u (user block file) option, because the original HDF5 file - will not be accessible if allows. HDFFV-5941 (JKM 08/15/2011) + will not be accessible if allows. HDFFV-5941 (JKM 2011/08/15) - Revised command help pages of h5jam and h5unjam. The descriptions were not up to date and some were missing. - HDFFV-7515 (JKM 08/15/2011) + HDFFV-7515 (JKM 2011/08/15) - h5repack: h5repack failed to copy dataset if the layout is changed from chunked with unlimited dims to contiguous. HDFFV-7649 (PC -- 2011/07/15) @@ -650,29 +653,29 @@ Bug Fixes since HDF5-1.8.0 release Manual. HDFFV-7656 (PC -- 2011/07/15) - Fixed h5diff to display instructive error message and exit with 1 when mutually exclusive options (-d, -p and --use-system-epsilon) - are used together. HDFFV-7600 (JKM 07/07/2011) + are used together. HDFFV-7600 (JKM 2011/07/07) - Fixed h5dump to display the first line of each element into correct position for multiple dimention array type. Before this fix, the first line of each element in array were displayed after the last line of previous element without moving to the next line (+indentation). - Bug #HDFFV-5878 (JKM 06/15/2011) + Bug #HDFFV-5878 (JKM 2011/06/15) - Fixed h5dump to display correct value for H5T_STD_I8LE dataset on a system (ppc64, linux, Big-Endian, clustering). - Bug #HDFFV-7594 (ABERT & JKM 05/12/2011) + Bug #HDFFV-7594 (ABERT & JKM 2011/05/12) - Fixed h5diff to compare file itself correctly. Previously h5diff reported either different or not compatible in certain cases even comparing file itself. This fix also improve performance when comparing same target objects through verifying the obj&file addresses before comparing the details in the objects (ex: datasets - or attributes) Bug #HDFFV-5928 (XCAO & JKM 05/06/2011) + or attributes) Bug #HDFFV-5928 (XCAO & JKM 2011/05/06) - Updated h5dump test case script to prevent entire test failure upon source directory is read-only. Bug# HDFFV-4342 (JKM 2011/4/12) - Fixed h5dump displaying incorrect values for H5T_STD_I8BE type data in attribute on Big-Endian machine. H5T_STD_I8BE is unsigned 8bit type, so h5dump is supposed to display -2 instead of 254. It worked correctly on Little-Endian system , but not on Big-Endian system. - Bug #HDFFV-4358 (JKM 04/08/2011) + Bug #HDFFV-4358 (JKM 2011/04/08) - Updated to unify option name to '--enable-error-stack' for printing HDF5 error stack messages for HDF5 tools. h5ls and h5dump for now. For h5ls, this replaces "-e/--errors" option, which is deprecated. diff --git a/tools/h5diff/CMakeLists.txt b/tools/h5diff/CMakeLists.txt index 9f45d6a..866102b 100644 --- a/tools/h5diff/CMakeLists.txt +++ b/tools/h5diff/CMakeLists.txt @@ -1131,6 +1131,7 @@ ADD_H5_TEST (h5diff_208 0 -c ${FILE19} ${FILE20}) ADD_H5_TEST (h5diff_220 1 -c non_comparables1.h5 non_comparables2.h5 /g1) # comparable dataset with non-comparable attribute and other comparable attributes. +# Also test non-compatible attributes with different type, dimention, rank. # All the rest comparables should display differences. ADD_H5_TEST (h5diff_221 1 -c non_comparables1.h5 non_comparables2.h5 /g2) diff --git a/tools/h5diff/h5diffgentest.c b/tools/h5diff/h5diffgentest.c index 4fd6d54..78949c8 100644 --- a/tools/h5diff/h5diffgentest.c +++ b/tools/h5diff/h5diffgentest.c @@ -4701,9 +4701,14 @@ static void test_non_comparables (const char * fname, int make_diffs) hid_t sid1=0; hid_t tid_dset1=0; hid_t tid_attr1=0; - hsize_t dims1[1] = {DIM_ARRY}; + hsize_t dims1_1[1] = {DIM_ARRY}; + hsize_t dims1_2[1] = {DIM_ARRY+1}; + hsize_t dims2[2] = {DIM_ARRY, 1}; int data1[DIM_ARRY] = {0,0,0}; int data2[DIM_ARRY] = {1,1,1}; + int data3[DIM_ARRY+1] = {1,1,1,1}; + int data1_dim2[DIM_ARRY][1] = {0,0,0}; + int rank_attr; char data1_str[DIM_ARRY][STR_SIZE]= {"ab","cd","ef"}; herr_t status = SUCCEED; int i; @@ -4713,6 +4718,9 @@ static void test_non_comparables (const char * fname, int make_diffs) void *attr_data_ptr1=NULL; void *attr_data_ptr2=NULL; void *attr_data_ptr3=NULL; + void *attr_data_ptr4=NULL; + void *attr2_dim_ptr=NULL; + void *attr3_dim_ptr=NULL; /* init */ tid_dset1=H5Tcopy(H5T_NATIVE_INT); @@ -4722,6 +4730,10 @@ static void test_non_comparables (const char * fname, int make_diffs) tid_attr1=H5Tcopy(H5T_NATIVE_INT); attr_data_ptr1=(int*)&data1; attr_data_ptr3=(int*)&data1; + attr_data_ptr4=(int*)&data1; + attr2_dim_ptr=(hsize_t*)&dims1_1; + attr3_dim_ptr=(hsize_t*)&dims1_1; + rank_attr=1; if (make_diffs) { @@ -4737,12 +4749,22 @@ static void test_non_comparables (const char * fname, int make_diffs) * group2 */ dset_data_ptr3=(int*)&data2; - /* attr1 */ + /* dset1/attr1 */ tid_attr1=H5Tcopy(H5T_C_S1); H5Tset_size(tid_attr1, (size_t)STR_SIZE); attr_data_ptr2=(char*)&data1_str; - /* attr2 */ - attr_data_ptr3=(int*)&data2; + + /* dset1/attr2 */ + attr2_dim_ptr=(hsize_t*)&dims1_2; + + /* dset1/attr3 */ + attr_data_ptr3=(int*)&data1_dim2; + attr3_dim_ptr=(hsize_t*)&dims2; + rank_attr=2; + + /* dset1/attr4 */ + attr_data_ptr4=(int*)&data2; + } @@ -4779,7 +4801,7 @@ static void test_non_comparables (const char * fname, int make_diffs) /*----------------------------------------------------------------------- * Datasets in /g1 *------------------------------------------------------------------------*/ - if((sid1 = H5Screate_simple(1, dims1, NULL)) < 0) + if((sid1 = H5Screate_simple(1, dims1_1, NULL)) < 0) goto out; /* dset1 */ @@ -4796,10 +4818,10 @@ static void test_non_comparables (const char * fname, int make_diffs) status = FAIL; goto out; } - write_attr(did1,1,dims1,"attr", H5T_NATIVE_INT, attr_data_ptr1); + write_attr(did1,1,dims1_1,"attr", H5T_NATIVE_INT, attr_data_ptr1); /* dset2 */ - status = write_dset(gid1, 1, dims1,"dset2", H5T_NATIVE_INT, dset_data_ptr2); + status = write_dset(gid1, 1, dims1_1,"dset2", H5T_NATIVE_INT, dset_data_ptr2); if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname); @@ -4809,7 +4831,8 @@ static void test_non_comparables (const char * fname, int make_diffs) /*----------------------------------------------------------------------- * Datasets in /g2 *------------------------------------------------------------------------*/ - /* dset1 */ + /* --------- + * dset1 */ if((did2 = H5Dcreate2(gid2, "dset1", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) { fprintf(stderr, "Error: %s> H5Dcreate2 failed.\n", "dset1"); @@ -4823,14 +4846,22 @@ static void test_non_comparables (const char * fname, int make_diffs) status = FAIL; goto out; } - /* attr1 */ - write_attr(did2,1,dims1,"attr1", tid_attr1, attr_data_ptr2); + /* attr1 - non-compatible : different type */ + write_attr(did2,1,dims1_1,"attr1", tid_attr1, attr_data_ptr2); - /* attr2 */ - write_attr(did2,1,dims1,"attr2", H5T_NATIVE_INT, attr_data_ptr3); - /* dset2 */ - status = write_dset(gid2, 1, dims1,"dset2", H5T_NATIVE_INT, dset_data_ptr3); + /* attr2 - non-compatible : same rank, different dimention */ + write_attr(did2,1, attr2_dim_ptr,"attr2", H5T_NATIVE_INT, data3); + + /* attr3 - non-compatible : different rank */ + write_attr(did2, rank_attr,attr3_dim_ptr,"attr3", H5T_NATIVE_INT, attr_data_ptr3); + + /* attr4 - compatible : different data values */ + write_attr(did2,1,dims1_1,"attr4", H5T_NATIVE_INT, attr_data_ptr4); + + /*---------- + * dset2 */ + status = write_dset(gid2, 1, dims1_1,"dset2", H5T_NATIVE_INT, dset_data_ptr3); if (status == FAIL) { fprintf(stderr, "Error: %s> write_dset failed\n", fname); diff --git a/tools/h5diff/testfiles/h5diff_221.txt b/tools/h5diff/testfiles/h5diff_221.txt index 8f90300..621f5c3 100644 --- a/tools/h5diff/testfiles/h5diff_221.txt +++ b/tools/h5diff/testfiles/h5diff_221.txt @@ -1,5 +1,9 @@ Not comparable: <attr1> is of class H5T_INTEGER and <attr1> is of class H5T_STRING -attribute: <attr2 of </g2/dset1>> and <attr2 of </g2/dset1>> +Not comparable: <attr2> has rank 1, dimensions [3], max dimensions [3] +and <attr2> has rank 1, dimensions [4], max dimensions [4] +Not comparable: <attr3> has rank 1, dimensions [3], max dimensions [3] +and <attr3> has rank 2, dimensions [3x1], max dimensions [3x1] +attribute: <attr4 of </g2/dset1>> and <attr4 of </g2/dset1>> 3 differences found dataset: </g2/dset1> and </g2/dset1> 6 differences found diff --git a/tools/h5diff/testfiles/h5diff_222.txt b/tools/h5diff/testfiles/h5diff_222.txt index 6e1bbd4..bdecb8a 100644 --- a/tools/h5diff/testfiles/h5diff_222.txt +++ b/tools/h5diff/testfiles/h5diff_222.txt @@ -6,7 +6,11 @@ dataset: </g1/dset1> and </g1/dset1> dataset: </g1/dset2> and </g1/dset2> 3 differences found Not comparable: <attr1> is of class H5T_INTEGER and <attr1> is of class H5T_STRING -attribute: <attr2 of </g2/dset1>> and <attr2 of </g2/dset1>> +Not comparable: <attr2> has rank 1, dimensions [3], max dimensions [3] +and <attr2> has rank 1, dimensions [4], max dimensions [4] +Not comparable: <attr3> has rank 1, dimensions [3], max dimensions [3] +and <attr3> has rank 2, dimensions [3x1], max dimensions [3x1] +attribute: <attr4 of </g2/dset1>> and <attr4 of </g2/dset1>> 3 differences found dataset: </g2/dset1> and </g2/dset1> 6 differences found diff --git a/tools/h5diff/testfiles/non_comparables1.h5 b/tools/h5diff/testfiles/non_comparables1.h5 Binary files differindex 3aa5199..71b65c8 100644 --- a/tools/h5diff/testfiles/non_comparables1.h5 +++ b/tools/h5diff/testfiles/non_comparables1.h5 diff --git a/tools/h5diff/testfiles/non_comparables2.h5 b/tools/h5diff/testfiles/non_comparables2.h5 Binary files differindex d860625..188ceb9 100644 --- a/tools/h5diff/testfiles/non_comparables2.h5 +++ b/tools/h5diff/testfiles/non_comparables2.h5 diff --git a/tools/h5diff/testh5diff.sh b/tools/h5diff/testh5diff.sh index 74ecd3a..8de12a5 100755 --- a/tools/h5diff/testh5diff.sh +++ b/tools/h5diff/testh5diff.sh @@ -799,7 +799,8 @@ TOOLTEST h5diff_207.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset8 g2/dset9 # not comparable in dataspace of zero dimension size TOOLTEST h5diff_208.txt -c h5diff_dset_zero_dim_size1.h5 h5diff_dset_zero_dim_size2.h5 -# non-comparable dataset with comparable attribute, and other comparable datasets. +# non-comparable dataset with comparable attribute, and other comparable datasets. +# Also test non-compatible attributes with different type, dimention, rank. # All the comparables should display differences. TOOLTEST h5diff_220.txt -c non_comparables1.h5 non_comparables2.h5 /g1 diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c index d9132e9..85cd01f 100644 --- a/tools/lib/h5diff_attr.c +++ b/tools/lib/h5diff_attr.c @@ -380,8 +380,10 @@ hsize_t diff_attr(hid_t loc1_id, *---------------------------------------------------------------------- */ + /* pass dims1 and dims2 for maxdims as well since attribute's maxdims + * are always same */ if( diff_can_type(ftype1_id, ftype2_id, rank1, rank2, dims1, dims2, - NULL, NULL, name1, name2, options, 0) != 1 ) + dims1, dims2, name1, name2, options, 0) != 1 ) { if(H5Tclose(ftype1_id) < 0) goto error; diff --git a/tools/lib/h5diff_util.c b/tools/lib/h5diff_util.c index 6d340d9..dfdc8b3 100644 --- a/tools/lib/h5diff_util.c +++ b/tools/lib/h5diff_util.c @@ -35,24 +35,27 @@ print_dimensions (int rank, hsize_t *dims) { int i; - if ( rank > 0 ) - { - - parallel_print("[" ); - for ( i = 0; i < rank-1; i++) - { - parallel_print(HSIZE_T_FORMAT, dims[i]); - parallel_print("x"); - } - - parallel_print(HSIZE_T_FORMAT, dims[rank-1]); - parallel_print("]" ); - } - else + if ( rank <= 0 ) { parallel_print("H5S_SCALAR" ); } + else + { + if (!dims) + parallel_print("dimension is NULL"); + else + { + parallel_print("["); + for ( i = 0; i < rank-1; i++) + { + parallel_print(HSIZE_T_FORMAT, dims[i]); + parallel_print("x"); + } + parallel_print(HSIZE_T_FORMAT, dims[rank-1]); + parallel_print("]" ); + } + } } |