diff options
131 files changed, 5975 insertions, 6114 deletions
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index a3fdadb..60e21c7 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -4,8 +4,8 @@ name: hdf5 dev CI on: push: branches: [ develop, hdf5_1_12, hdf5_1_10, hdf5_1_8 ] -# pull_request: -# branches: [ develop ] + pull_request: + branches: [ develop, hdf5_1_12, hdf5_1_10, hdf5_1_8 ] # A workflow run is made up of one or more jobs that can run sequentially or in parallel jobs: diff --git a/CMakeLists.txt b/CMakeLists.txt index b559446..ac291fa 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -995,6 +995,17 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for endif () endif () + #option (HDF5_INSTALL_MOD_FORTRAN "Copy FORTRAN mod files to include directory (NO SHARED STATIC)" "NO") + set (HDF5_INSTALL_MOD_FORTRAN "SHARED" CACHE STRING "Copy FORTRAN mod files to include directory (NO SHARED STATIC)") + set_property (CACHE HDF5_INSTALL_MOD_FORTRAN PROPERTY STRINGS NO SHARED STATIC) + if (NOT HDF5_INSTALL_MOD_FORTRAN MATCHES "NO") + if (NOT BUILD_SHARED_LIBS AND BUILD_STATIC_LIBS) + set (HDF5_INSTALL_MOD_FORTRAN "STATIC") + elseif (BUILD_SHARED_LIBS AND NOT BUILD_STATIC_LIBS) + set (HDF5_INSTALL_MOD_FORTRAN "SHARED") + endif () + endif () + add_subdirectory (fortran) if (HDF5_BUILD_HL_LIB) if (EXISTS "${HDF5_SOURCE_DIR}/hl/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/hl/fortran") @@ -1249,6 +1249,7 @@ ./test/ttsafe.c ./test/ttsafe.h ./test/ttsafe_acreate.c +./test/ttsafe_attr_vlen.c ./test/ttsafe_cancel.c ./test/ttsafe_dcreate.c ./test/ttsafe_error.c @@ -2606,6 +2607,8 @@ ./tools/test/h5diff/testfiles/h5diff_dset3.h5 ./tools/test/h5diff/testfiles/h5diff_dtypes.h5 ./tools/test/h5diff/testfiles/h5diff_empty.h5 +./tools/test/h5diff/testfiles/h5diff_eps1.h5 +./tools/test/h5diff/testfiles/h5diff_eps2.h5 ./tools/test/h5diff/testfiles/h5diff_hyper1.h5 ./tools/test/h5diff/testfiles/h5diff_hyper2.h5 ./tools/test/h5diff/testfiles/h5diff_types.h5 @@ -2634,6 +2637,7 @@ ./tools/test/h5diff/testfiles/h5diff_dset_zero_dim_size1.h5 ./tools/test/h5diff/testfiles/h5diff_dset_zero_dim_size2.h5 ./tools/test/h5diff/testfiles/h5diff_enum_invalid_values.h5 +./tools/test/h5diff/testfiles/h5diff_eps.txt ./tools/test/h5diff/testfiles/compounds_array_vlen1.h5 ./tools/test/h5diff/testfiles/compounds_array_vlen2.h5 ./tools/test/h5diff/testfiles/non_comparables1.h5 @@ -2645,8 +2649,8 @@ ./tools/test/h5diff/testfiles/h5diff_ud.txt ./tools/test/h5diff/testfiles/h5diff_udfail.err ./tools/test/h5diff/testfiles/h5diff_udfail.txt -./tools/test/h5diff/testfiles/diff_strings1.h5 -./tools/test/h5diff/testfiles/diff_strings2.h5 +./tools/test/h5diff/testfiles/h5diff_strings1.h5 +./tools/test/h5diff/testfiles/h5diff_strings2.h5 ./tools/test/h5diff/testfiles/h5diff_vlstr.txt #vds ./tools/test/h5diff/testfiles/h5diff_v1.txt diff --git a/config/cmake/HDF5UseFortran.cmake b/config/cmake/HDF5UseFortran.cmake index c5d8200..4350b7a 100644 --- a/config/cmake/HDF5UseFortran.cmake +++ b/config/cmake/HDF5UseFortran.cmake @@ -435,7 +435,7 @@ set (${HDF_PREFIX}_H5CONFIG_F_RKIND_SIZEOF "INTEGER, DIMENSION(1:num_rkinds) :: ENABLE_LANGUAGE (C) if (NOT CMAKE_VERSION VERSION_LESS "3.14.0") -include (CheckCSourceRuns) + include (CheckCSourceRuns) else () #----------------------------------------------------------------------------- # The provided CMake C macros don't provide a general compile/run function diff --git a/config/cmake/cacheinit.cmake b/config/cmake/cacheinit.cmake index 4846997..64e8dcc 100644 --- a/config/cmake/cacheinit.cmake +++ b/config/cmake/cacheinit.cmake @@ -23,6 +23,9 @@ set (HDF_PACKAGE_NAMESPACE "hdf5::" CACHE STRING "Name for HDF package namespace set (HDF5_BUILD_FORTRAN ON CACHE BOOL "Build FORTRAN support" FORCE) +set (HDF5_INSTALL_MOD_FORTRAN "NO" CACHE STRING "Copy FORTRAN mod files to include directory (NO SHARED STATIC)" FORCE) +set_property (CACHE HDF5_INSTALL_MOD_FORTRAN PROPERTY STRINGS NO SHARED STATIC) + set (HDF5_BUILD_GENERATORS ON CACHE BOOL "Build Test Generators" FORCE) set (HDF5_ENABLE_Z_LIB_SUPPORT ON CACHE BOOL "Enable Zlib Filters" FORCE) diff --git a/config/cmake_ext_mod/ConfigureChecks.cmake b/config/cmake_ext_mod/ConfigureChecks.cmake index 6f5a835..0ddb6d0 100644 --- a/config/cmake_ext_mod/ConfigureChecks.cmake +++ b/config/cmake_ext_mod/ConfigureChecks.cmake @@ -679,4 +679,3 @@ endif () # the cache value is set in it's config file) # set (${HDF_PREFIX}_CONVERT_DENORMAL_FLOAT 1) - diff --git a/configure.ac b/configure.ac index e46475d..a239cd3 100644 --- a/configure.ac +++ b/configure.ac @@ -1250,12 +1250,6 @@ case "$host_cpu-$host_vendor-$host_os" in H5_CPPFLAGS="-D_GNU_SOURCE $H5_CPPFLAGS" ;; - *solaris*) - ## Solaris also needs _POSIX_C_SOURCE set correctly to pick up - ## clock_gettime(). - H5_CPPFLAGS="-D_POSIX_C_SOURCE=200112L $H5_CPPFLAGS" - H5_CPPFLAGS="-D_GNU_SOURCE $H5_CPPFLAGS" - ;; esac ## Need to add the AM_ and H5_ into CFLAGS/CPPFLAGS to make them visible @@ -1611,7 +1605,10 @@ case "X-$withval" in if test "x$HAVE_SZLIB" = "xyes" -a "x$HAVE_SZLIB_H" = "xyes"; then AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress],, - [LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset HAVE_SZLIB]) + [CPPFLAGS="$saved_CPPFLAGS"; AM_CPPFLAGS="$saved_AM_CPPFLAGS"; LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset HAVE_SZLIB]) + if test -z "$HAVE_SZLIB"; then + AC_MSG_RESULT([Using SZ_BufftoBuffCompress from libsz in $szlib_lib failed. Szip not enabled.]) + fi fi if test -z "$HAVE_SZLIB" -a -n "$HDF5_CONFIG_ABORT"; then diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt index bf2fd84..b1add54 100644 --- a/fortran/src/CMakeLists.txt +++ b/fortran/src/CMakeLists.txt @@ -412,6 +412,16 @@ if (NOT ONLY_SHARED_LIBS) COMPONENT fortheaders ) + if (HDF5_INSTALL_MOD_FORTRAN MATCHES "STATIC") + install ( + FILES + ${mod_files} + DESTINATION + ${HDF5_INSTALL_INCLUDE_DIR} + COMPONENT + fortheaders + ) + endif () endif () if (BUILD_SHARED_LIBS) @@ -445,6 +455,16 @@ if (BUILD_SHARED_LIBS) COMPONENT fortheaders ) + if (HDF5_INSTALL_MOD_FORTRAN MATCHES "SHARED") + install ( + FILES + ${modsh_files} + DESTINATION + ${HDF5_INSTALL_INCLUDE_DIR} + COMPONENT + fortheaders + ) + endif () endif () #----------------------------------------------------------------------------- diff --git a/hl/fortran/src/CMakeLists.txt b/hl/fortran/src/CMakeLists.txt index 71b9380..d682d5f 100644 --- a/hl/fortran/src/CMakeLists.txt +++ b/hl/fortran/src/CMakeLists.txt @@ -234,7 +234,6 @@ if (NOT ONLY_SHARED_LIBS) ${MOD_BUILD_DIR}/h5lt_const.mod ${MOD_BUILD_DIR}/h5im.mod ) - install ( FILES ${mod_files} @@ -243,6 +242,16 @@ if (NOT ONLY_SHARED_LIBS) COMPONENT fortheaders ) + if (HDF5_INSTALL_MOD_FORTRAN MATCHES "STATIC") + install ( + FILES + ${mod_files} + DESTINATION + ${HDF5_INSTALL_INCLUDE_DIR} + COMPONENT + fortheaders + ) + endif () endif () if (BUILD_SHARED_LIBS) set (modsh_files @@ -261,6 +270,16 @@ if (BUILD_SHARED_LIBS) COMPONENT fortheaders ) + if (HDF5_INSTALL_MOD_FORTRAN MATCHES "SHARED") + install ( + FILES + ${modsh_files} + DESTINATION + ${HDF5_INSTALL_INCLUDE_DIR} + COMPONENT + fortheaders + ) + endif () endif () #----------------------------------------------------------------------------- diff --git a/hl/tools/gif2h5/hdf2gif.c b/hl/tools/gif2h5/hdf2gif.c index 0e2a898..1833c92 100644 --- a/hl/tools/gif2h5/hdf2gif.c +++ b/hl/tools/gif2h5/hdf2gif.c @@ -18,8 +18,11 @@ #include "h5tools.h" #include "h5tools_utils.h" -#define IMAGE_WIDTH_MAX 65535 /* unsigned 16bits integer */ -#define IMAGE_HEIGHT_MAX 65535 /* unsigned 16bits integer */ +/* Name of tool */ +#define PROGRAMNAME "hdf2gif" + +#define IMAGE_WIDTH_MAX 65535 /* unsigned 16bits integer */ +#define IMAGE_HEIGHT_MAX 65535 /* unsigned 16bits integer */ int EndianOrder; @@ -42,12 +45,17 @@ usage(void) } +static void +leave(int ret) +{ + h5tools_close(); + HDexit(ret); +} + FILE *fpGif = NULL; int main(int argc , char **argv) { GIFBYTE *Image; - void *edata; - H5E_auto2_t func; /* compression structs */ GIFCHAR *HDFName = NULL; @@ -73,9 +81,8 @@ int main(int argc , char **argv) char *image_name = NULL; int idx; - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); + h5tools_setprogname(PROGRAMNAME); + h5tools_setstatus(EXIT_SUCCESS); /* Initialize h5tools lib */ h5tools_init(); @@ -83,8 +90,7 @@ int main(int argc , char **argv) if ( argv[1] && (strcmp("-V",argv[1])==0) ) { print_version("gif2h5"); - exit(EXIT_SUCCESS); - + h5tools_setstatus(EXIT_SUCCESS); } @@ -92,7 +98,7 @@ int main(int argc , char **argv) { /* they didn't supply at least one image -- bail */ usage(); - return EXIT_FAILURE; + h5tools_setstatus(EXIT_FAILURE); } HDFName = argv[1]; @@ -156,18 +162,18 @@ int main(int argc , char **argv) goto out; } - if (width > IMAGE_WIDTH_MAX || height > IMAGE_HEIGHT_MAX) + if (width > IMAGE_WIDTH_MAX || height > IMAGE_HEIGHT_MAX) { - fprintf(stderr, "HDF5 image is too large. Limit is %d by %d.\n", IMAGE_WIDTH_MAX, IMAGE_HEIGHT_MAX); - goto out; - } + fprintf(stderr, "HDF5 image is too large. Limit is %d by %d.\n", IMAGE_WIDTH_MAX, IMAGE_HEIGHT_MAX); + goto out; + } - /* tool can handle single plane images only. */ - if (planes > 1) + /* tool can handle single plane images only. */ + if (planes > 1) { - fprintf(stderr, "Cannot handle multiple planes image\n"); - goto out; - } + fprintf(stderr, "Cannot handle multiple planes image\n"); + goto out; + } Image = (GIFBYTE*) malloc( (size_t) width * (size_t) height ); @@ -222,9 +228,9 @@ int main(int argc , char **argv) numcols = 256; for (i = 0 ; i < numcols ; i++) { - Red[i] = (GIFBYTE)(255 - i); - Green[i] = (GIFBYTE)(255 - i); - Blue[i] = (GIFBYTE)(255 - i); + Red[i] = (GIFBYTE)(255 - i); + Green[i] = (GIFBYTE)(255 - i); + Blue[i] = (GIFBYTE)(255 - i); } } else @@ -257,7 +263,7 @@ int main(int argc , char **argv) if (j==i) { /* wasn't found */ - pc2nc[i] = (GIFBYTE)nc; + pc2nc[i] = (GIFBYTE)nc; r1[nc] = Red[i]; g1[nc] = Green[i]; b1[nc] = Blue[i]; @@ -345,9 +351,7 @@ int main(int argc , char **argv) if (image_name != NULL) free(image_name); - H5Eset_auto2(H5E_DEFAULT, func, edata); - - return EXIT_SUCCESS; + leave(h5tools_getstatus()); out: @@ -357,7 +361,6 @@ out: if (image_name != NULL) free(image_name); - H5Eset_auto2(H5E_DEFAULT, func, edata); - - return EXIT_FAILURE; + h5tools_setstatus(EXIT_FAILURE); + leave(h5tools_getstatus()); } diff --git a/hl/tools/h5watch/h5watch.c b/hl/tools/h5watch/h5watch.c index 7ad737c..56f9b63 100644 --- a/hl/tools/h5watch/h5watch.c +++ b/hl/tools/h5watch/h5watch.c @@ -821,10 +821,6 @@ main(int argc, const char *argv[]) char drivername[50]; /* VFD name */ char *fname = NULL; /* File name */ char *dname = NULL; /* Dataset name */ - void *edata; /* Error reporting */ - void *tools_edata; /* Error reporting */ - H5E_auto2_t func; /* Error reporting */ - H5E_auto2_t tools_func; /* Error reporting */ char *x; /* Temporary string pointer */ hid_t fid = -1; /* File ID */ hid_t fapl = -1; /* File access property list */ @@ -833,17 +829,9 @@ main(int argc, const char *argv[]) h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); - /* Disable tools error reporting */ - H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); - H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); - /* To exit from h5watch for SIGTERM signal */ if(HDsignal(SIGTERM, catch_signal) == SIG_ERR) { error_msg("An error occurred while setting a signal handler.\n"); @@ -865,6 +853,9 @@ main(int argc, const char *argv[]) leave(EXIT_FAILURE); } + /* enable error reporting if command line option */ + h5tools_error_report(); + /* Mostly copied from tools/h5ls coding & modified accordingly */ /* * [OBJECT] is specified as @@ -881,18 +872,22 @@ main(int argc, const char *argv[]) * doesn't exist). */ if((fname = HDstrdup(argv[opt_ind])) == NULL) { - error_msg("memory allocation failed (file %s:line %d)\n", - __FILE__, __LINE__); + error_msg("memory allocation failed (file %s:line %d)\n", __FILE__, __LINE__); h5tools_setstatus(EXIT_FAILURE); + goto done; } /* Create a copy of file access property list */ - if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) - return -1; + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) { + h5tools_setstatus(EXIT_FAILURE); + goto done; + } /* Set to use the latest library format */ - if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) - return -1; + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) { + h5tools_setstatus(EXIT_FAILURE); + goto done; + } do { while(fname && *fname) { @@ -917,30 +912,37 @@ main(int argc, const char *argv[]) if(fid < 0) { error_msg("unable to open file \"%s\"\n", fname); - if(fname) HDfree(fname); - if(fapl >= 0) H5Pclose(fapl); - leave(EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } if(!dname) { error_msg("no dataset specified\n"); h5tools_setstatus(EXIT_FAILURE); - } else { + goto done; + } + else { *dname = '/'; x = dname; if((dname = HDstrdup(dname)) == NULL) { - error_msg("memory allocation failed (file %s:line %d)\n", - __FILE__, __LINE__); + error_msg("memory allocation failed (file %s:line %d)\n", __FILE__, __LINE__); h5tools_setstatus(EXIT_FAILURE); - } else { + goto done; + } + else { *x = '\0'; /* Validate dataset */ - if(check_dataset(fid, dname) < 0) + if(check_dataset(fid, dname) < 0) { h5tools_setstatus(EXIT_FAILURE); + goto done; + } /* Validate input "fields" */ - else if(g_list_of_fields && *g_list_of_fields) - if(process_cmpd_fields(fid, dname) < 0) + else if(g_list_of_fields && *g_list_of_fields) { + if(process_cmpd_fields(fid, dname) < 0) { h5tools_setstatus(EXIT_FAILURE); + goto done; + } + } } } @@ -949,15 +951,20 @@ main(int argc, const char *argv[]) if(monitor_dataset(fid, dname) < 0) h5tools_setstatus(EXIT_FAILURE); +done: /* Free spaces */ - if(fname) HDfree(fname); - if(dname) HDfree(dname); - if(g_list_of_fields) HDfree(g_list_of_fields); + if(fname) + HDfree(fname); + if(dname) + HDfree(dname); + if(g_list_of_fields) + HDfree(g_list_of_fields); if(g_listv) { H5LD_clean_vector(g_listv); HDfree(g_listv); } - if(g_dup_fields) HDfree(g_dup_fields); + if(g_dup_fields) + HDfree(g_dup_fields); /* Close the file access property list */ if(fapl >= 0 && H5Pclose(fapl) < 0) { @@ -966,14 +973,11 @@ main(int argc, const char *argv[]) } /* Close the file */ - if(H5Fclose(fid) < 0) { + if(fid >= 0 && H5Fclose(fid) < 0) { error_msg("unable to close file\n"); h5tools_setstatus(EXIT_FAILURE); } - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - /* exit */ leave(h5tools_getstatus()); } /* main() */ diff --git a/java/test/TestH5S.java b/java/test/TestH5S.java index 985342b..97c0b68 100644 --- a/java/test/TestH5S.java +++ b/java/test/TestH5S.java @@ -171,7 +171,7 @@ public class TestH5S { try { H5.H5Sset_extent_none(H5sid); read_type = H5.H5Sget_simple_extent_type(H5sid); - assertTrue("H5.H5Sget_simple_extent_type: "+read_type, HDF5Constants.H5S_NO_CLASS == read_type); + assertTrue("H5.H5Sget_simple_extent_type: "+read_type, HDF5Constants.H5S_NULL == read_type); } catch (Throwable err) { err.printStackTrace(); diff --git a/release_docs/INSTALL_CMake.txt b/release_docs/INSTALL_CMake.txt index 5442f6c..89cd9f8 100644 --- a/release_docs/INSTALL_CMake.txt +++ b/release_docs/INSTALL_CMake.txt @@ -624,6 +624,7 @@ The config/cmake/cacheinit.cmake file can override the following values. ---------------- General Build Options --------------------- BUILD_SHARED_LIBS "Build Shared Libraries" ON +BUILD_STATIC_LIBS "Build Static Libraries" ON BUILD_STATIC_EXECS "Build Static Executables" OFF BUILD_TESTING "Build HDF5 Unit Testing" ON @@ -636,6 +637,7 @@ HDF5_BUILD_HL_LIB "Build HIGH Level HDF5 Library" ON HDF5_BUILD_TOOLS "Build HDF5 Tools" ON ---------------- HDF5 Advanced Options --------------------- +ONLY_SHARED_LIBS "Only Build Shared Libraries" OFF ALLOW_UNSUPPORTED "Allow unsupported combinations of configure options" OFF HDF5_EXTERNAL_LIB_PREFIX "Use prefix for custom library naming." "" HDF5_DISABLE_COMPILER_WARNINGS "Disable compiler warnings" OFF @@ -676,6 +678,12 @@ if (CMAKE_BUILD_TYPE MATCHES Debug) HDF5_ENABLE_INSTRUMENT "Instrument The library" OFF if (HDF5_TEST_VFD) HDF5_TEST_FHEAP_VFD "Execute fheap test with different VFDs" ON +if (HDF5_BUILD_FORTRAN) + HDF5_INSTALL_MOD_FORTRAN "Copy FORTRAN mod files to include directory (NO SHARED STATIC)" "XX" + if (BUILD_SHARED_LIBS AND BUILD_STATIC_LIBS) default HDF5_INSTALL_MOD_FORTRAN is SHARED + if (BUILD_SHARED_LIBS AND NOT BUILD_STATIC_LIBS) default HDF5_INSTALL_MOD_FORTRAN is SHARED + if (NOT BUILD_SHARED_LIBS AND BUILD_STATIC_LIBS) default HDF5_INSTALL_MOD_FORTRAN is STATIC + if (NOT BUILD_SHARED_LIBS AND NOT BUILD_STATIC_LIBS) default HDF5_INSTALL_MOD_FORTRAN is SHARED ---------------- External Library Options --------------------- HDF5_ALLOW_EXTERNAL_SUPPORT "Allow External Library Building (NO GIT TGZ)" "NO" diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index 665a156..b9641d1 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -48,6 +48,31 @@ New Features Configuration: ------------- + - CMake option to link the generated Fortran MOD files into the include + directory. + + The Fortran generation of MOD files by a Fortran compile can produce + different binary files between SHARED and STATIC compiles with different + compilers and/or different platforms. Note that it has been found that + different versions of Fortran compilers will produce incompatible MOD + files. Currently, CMake will locate these MOD files in subfolders of + the include directory and add that path to the Fortran library target + in the CMake config file, which can be used by the CMake find library + process. For other build systems using the binary from a CMake install, + a new CMake configuration can be used to copy the pre-chosen version + of the Fortran MOD files into the install include directory. + + The default will depend on the configuration of + BUILD_STATIC_LIBS and BUILD_SHARED_LIBS: + YES YES Default to SHARED + YES NO Default to STATIC + NO YES Default to SHARED + NO NO Default to SHARED + The defaults can be overriden by setting the config option + HDF5_INSTALL_MOD_FORTRAN to one of NO, SHARED, or STATIC + + (ADB - 2020/07/9, HDFFV-11116) + - CMake option to use AEC (open source SZip) library instead of SZip The open source AEC library is a replacement library for SZip. In @@ -631,6 +656,31 @@ Bug Fixes since HDF5-1.10.3 release Library ------- + - Fixed issues CVE-2018-13870 and CVE-2018-13869 + + When a buffer overflow occurred because a name length was corrupted + and became very large, h5dump crashed on memory access violation. + + A check for reading pass the end of the buffer was added to multiple + locations to prevent the crashes and h5dump now simply fails with an + error message when this error condition occurs. + + (BMR - 2020/7/22, HDFFV-11120 and HDFFV-11121) + + - Fixed the segmentation fault when reading attributes with multiple threads + + It was reported that the reading of attributes with variable length string + datatype will crash with segmentation fault particularly when the number of + threads is high (>16 threads). The problem was due to the file pointer that + was set in the variable length string datatype for the attribute. That file + pointer was already closed when the attribute was accessed. + + The problem was fixed by setting the file pointer to the current opened file pointer + when the attribute was accessed. Similar patch up was done before when reading + dataset with variable length string datatype. + + (VC - 2020/07/13, HDFFV-11080) + - Fixed CVE-2020-10810 The tool h5clear produced a segfault during an error recovery in @@ -912,6 +962,21 @@ Bug Fixes since HDF5-1.10.3 release (DER - 2019/12/09, HDFFV-10945) + - H5Sset_extent_none() sets the dataspace class to H5S_NO_CLASS which + causes asserts/errors when passed to other dataspace API calls. + + H5S_NO_CLASS is an internal class value that should not have been + exposed via a public API call. + + In debug builds of the library, this can cause asserts to trip. In + non-debug builds, it will produce normal library errors. + + The new library behavior is for H5Sset_extent_none() to convert + the dataspace into one of type H5S_NULL, which is better handled + by the library and easier for developers to reason about. + + (DER - 2020/07/27, HDFFV-11027) + Java Library: ---------------- @@ -989,7 +1054,43 @@ Bug Fixes since HDF5-1.10.3 release Tools ----- - - + - The tools library was updated by standardizing the error stack process. + + General sequence is: + h5tools_setprogname(PROGRAMNAME); + h5tools_setstatus(EXIT_SUCCESS); + h5tools_init(); + ... process the command-line (check for error-stack enable) ... + h5tools_error_report(); + ... (do work) ... + h5diff_exit(ret); + + (ADB - 2020/07/20, HDFFV-11066) + + - h5diff fixed a command line parsing error. + + h5diff would ignore the argument to -d (delta) if it is smaller than DBL_EPSILON. + The macro H5_DBL_ABS_EQUAL was removed and a direct value comparision was used. + + (ADB - 2020/07/20, HDFFV-10897) + + - h5diff added a command line option to ignore attributes. + + h5diff would ignore all objects with a supplied path if the exclude-path argument is used. + Adding the exclude-attribute argument will only eclude attributes, with the supplied path, + from comparision. + + (ADB - 2020/07/20, HDFFV-5935) + + - h5diff added another level to the verbose argument to print filenames. + + Added verbose level 3 that is level 2 plus the filenames. The levels are: + 0 : Identical to '-v' or '--verbose' + 1 : All level 0 information plus one-line attribute status summary + 2 : All level 1 information plus extended attribute status report + 3 : All level 2 information plus file names + + (ADB - 2020/07/20, HDFFV-10005) High-Level APIs: ------ @@ -1015,9 +1116,9 @@ Bug Fixes since HDF5-1.10.3 release ------- - Stopped java/test/junit.sh.in installing libs for testing under ${prefix} - Lib files needed are now copied to a subdirectory in the java/test - directory, and on Macs the loader path for libhdf5.xxxs.so is changed - in the temporary copy of libhdf5_java.dylib. + Lib files needed are now copied to a subdirectory in the java/test + directory, and on Macs the loader path for libhdf5.xxxs.so is changed + in the temporary copy of libhdf5_java.dylib. (LRK, 2020/7/2, HDFFV-11063) diff --git a/src/H5Aint.c b/src/H5Aint.c index 1a74abe..cd0ab80 100644 --- a/src/H5Aint.c +++ b/src/H5Aint.c @@ -616,6 +616,10 @@ H5A__read(const H5A_t *attr, const H5T_t *mem_type, void *buf) HDassert(mem_type); HDassert(buf); + /* Patch the top level file pointer in attr->shared->dt->shared->u.vlen.f if needed */ + if(H5T_patch_vlen_file(attr->shared->dt, H5F_VOL_OBJ(attr->oloc.file)) < 0 ) + HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't patch VL datatype file pointer") + /* Create buffer for data to store on disk */ if((snelmts = H5S_GET_EXTENT_NPOINTS(attr->shared->ds)) < 0) HGOTO_ERROR(H5E_ATTR, H5E_CANTCOUNT, FAIL, "dataspace is invalid") diff --git a/src/H5B2pkg.h b/src/H5B2pkg.h index 338db5a..7d73752 100644 --- a/src/H5B2pkg.h +++ b/src/H5B2pkg.h @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> + * Programmer: Quincey Koziol * Monday, January 31, 2005 * * Purpose: This file contains declarations which are visible only within diff --git a/src/H5B2private.h b/src/H5B2private.h index 0b64381..9303d4f 100644 --- a/src/H5B2private.h +++ b/src/H5B2private.h @@ -15,7 +15,7 @@ * * Created: H5B2private.h * Jan 31 2005 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Quincey Koziol * * Purpose: Private header for library accessible B-tree routines. * diff --git a/src/H5Bdbg.c b/src/H5Bdbg.c index 37a94f4..0d0a56d 100644 --- a/src/H5Bdbg.c +++ b/src/H5Bdbg.c @@ -13,11 +13,11 @@ /*------------------------------------------------------------------------- * - * Created: H5Bdbg.c - * Dec 11 2008 - * Quincey Koziol <koziol@hdfgroup.org> + * Created: H5Bdbg.c + * Dec 11 2008 + * Quincey Koziol * - * Purpose: Debugging routines for B-link tree package. + * Purpose: Debugging routines for B-link tree package. * *------------------------------------------------------------------------- */ @@ -32,35 +32,33 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Bpkg.h" /* B-link trees */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5MMprivate.h" /* Memory management */ +#include "H5private.h" /* Generic Functions */ +#include "H5Bpkg.h" /* B-link trees */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5MMprivate.h" /* Memory management */ /*------------------------------------------------------------------------- - * Function: H5B_debug + * Function: H5B_debug * - * Purpose: Prints debugging info about a B-tree. + * Purpose: Prints debugging info about a B-tree. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * matzke@llnl.gov - * Aug 4 1997 + * Programmer: Robb Matzke + * Aug 4 1997 * *------------------------------------------------------------------------- */ herr_t -H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, - const H5B_class_t *type, void *udata) +H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, const H5B_class_t *type, void *udata) { - H5B_t *bt = NULL; - H5UC_t *rc_shared; /* Ref-counted shared info */ + H5B_t *bt = NULL; + H5UC_t *rc_shared; /* Ref-counted shared info */ H5B_shared_t *shared; /* Pointer to shared B-tree info */ H5B_cache_ud_t cache_udata; /* User-data for metadata cache callback */ - unsigned u; /* Local index variable */ + unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -97,55 +95,53 @@ H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, * Print the values. */ HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Tree type ID:", - ((shared->type->id) == H5B_SNODE_ID ? "H5B_SNODE_ID" : + "Tree type ID:", + ((shared->type->id) == H5B_SNODE_ID ? "H5B_SNODE_ID" : ((shared->type->id) == H5B_CHUNK_ID ? "H5B_CHUNK_ID" : "Unknown!"))); HDfprintf(stream, "%*s%-*s %zu\n", indent, "", fwidth, - "Size of node:", - shared->sizeof_rnode); + "Size of node:", + shared->sizeof_rnode); HDfprintf(stream, "%*s%-*s %zu\n", indent, "", fwidth, - "Size of raw (disk) key:", - shared->sizeof_rkey); + "Size of raw (disk) key:", + shared->sizeof_rkey); HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Dirty flag:", - bt->cache_info.is_dirty ? "True" : "False"); + "Dirty flag:", + bt->cache_info.is_dirty ? "True" : "False"); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Level:", - bt->level); + "Level:", + bt->level); HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent, "", fwidth, - "Address of left sibling:", - bt->left); + "Address of left sibling:", + bt->left); HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent, "", fwidth, - "Address of right sibling:", - bt->right); + "Address of right sibling:", + bt->right); HDfprintf(stream, "%*s%-*s %u (%u)\n", indent, "", fwidth, - "Number of children (max):", - bt->nchildren, shared->two_k); + "Number of children (max):", + bt->nchildren, shared->two_k); /* * Print the child addresses */ for(u = 0; u < bt->nchildren; u++) { - HDfprintf(stream, "%*sChild %d...\n", indent, "", u); - HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent + 3, "", MAX(0, fwidth - 3), - "Address:", bt->child[u]); + HDfprintf(stream, "%*sChild %d...\n", indent, "", u); + HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent + 3, "", MAX(0, fwidth - 3), + "Address:", bt->child[u]); /* If there is a key debugging routine, use it to display the left & right keys */ - if(type->debug_key) { + if(type->debug_key) { /* Decode the 'left' key & print it */ HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3), "Left Key:"); HDassert(H5B_NKEY(bt,shared,u)); - (void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6), - H5B_NKEY(bt, shared, u), udata); + (void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6), H5B_NKEY(bt, shared, u), udata); /* Decode the 'right' key & print it */ HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3), "Right Key:"); HDassert(H5B_NKEY(bt, shared, u + 1)); - (void)(type->debug_key)(stream, indent + 6, MAX (0, fwidth - 6), - H5B_NKEY(bt, shared, u + 1), udata); - } /* end if */ + (void)(type->debug_key)(stream, indent + 6, MAX (0, fwidth - 6), H5B_NKEY(bt, shared, u + 1), udata); + } /* end if */ } /* end for */ done: @@ -157,16 +153,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5B__assert + * Function: H5B__assert * - * Purpose: Verifies that the tree is structured correctly. + * Purpose: Verifies that the tree is structured correctly. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: aborts if something is wrong. + * Failure: aborts if something is wrong. * - * Programmer: Robb Matzke - * Tuesday, November 4, 1997 + * Programmer: Robb Matzke + * Tuesday, November 4, 1997 * *------------------------------------------------------------------------- */ @@ -174,20 +170,20 @@ done: herr_t H5B__assert(H5F_t *f, haddr_t addr, const H5B_class_t *type, void *udata) { - H5B_t *bt = NULL; - H5UC_t *rc_shared; /* Ref-counted shared info */ + H5B_t *bt = NULL; + H5UC_t *rc_shared; /* Ref-counted shared info */ H5B_shared_t *shared; /* Pointer to shared B-tree info */ H5B_cache_ud_t cache_udata; /* User-data for metadata cache callback */ - int ncell, cmp; - static int ncalls = 0; - herr_t status; + int ncell, cmp; + static int ncalls = 0; + herr_t status; herr_t ret_value = SUCCEED; /* Return value */ /* A queue of child data */ struct child_t { - haddr_t addr; - unsigned level; - struct child_t *next; + haddr_t addr; + unsigned level; + struct child_t *next; } *head = NULL, *tail = NULL, *prev = NULL, *cur = NULL, *tmp = NULL; FUNC_ENTER_PACKAGE @@ -228,60 +224,60 @@ H5B__assert(H5F_t *f, haddr_t addr, const H5B_class_t *type, void *udata) * test. */ for(ncell = 0; cur; ncell++) { - bt = (H5B_t *)H5AC_protect(f, H5AC_BT, cur->addr, &cache_udata, H5AC__READ_ONLY_FLAG); - HDassert(bt); - - /* Check node header */ - HDassert(bt->level == cur->level); - if(cur->next && cur->next->level == bt->level) - HDassert(H5F_addr_eq(bt->right, cur->next->addr)); - else - HDassert(!H5F_addr_defined(bt->right)); - if(prev && prev->level == bt->level) - HDassert(H5F_addr_eq(bt->left, prev->addr)); - else - HDassert(!H5F_addr_defined(bt->left)); - - if(cur->level > 0) { + bt = (H5B_t *)H5AC_protect(f, H5AC_BT, cur->addr, &cache_udata, H5AC__READ_ONLY_FLAG); + HDassert(bt); + + /* Check node header */ + HDassert(bt->level == cur->level); + if(cur->next && cur->next->level == bt->level) + HDassert(H5F_addr_eq(bt->right, cur->next->addr)); + else + HDassert(!H5F_addr_defined(bt->right)); + if(prev && prev->level == bt->level) + HDassert(H5F_addr_eq(bt->left, prev->addr)); + else + HDassert(!H5F_addr_defined(bt->left)); + + if(cur->level > 0) { unsigned u; - for(u = 0; u < bt->nchildren; u++) { - /* - * Check that child nodes haven't already been seen. If they - * have then the tree has a cycle. - */ - for(tmp = head; tmp; tmp = tmp->next) - HDassert(H5F_addr_ne(tmp->addr, bt->child[u])); - - /* Add the child node to the end of the queue */ - tmp = (struct child_t *)H5MM_calloc(sizeof(struct child_t)); - HDassert(tmp); - tmp->addr = bt->child[u]; - tmp->level = bt->level - 1; - tail->next = tmp; - tail = tmp; - - /* Check that the keys are monotonically increasing */ - cmp = (type->cmp2)(H5B_NKEY(bt, shared, u), udata, H5B_NKEY(bt, shared, u + 1)); - HDassert(cmp < 0); - } /* end for */ - } /* end if */ - - /* Release node */ - status = H5AC_unprotect(f, H5AC_BT, cur->addr, bt, H5AC__NO_FLAGS_SET); - HDassert(status >= 0); + for(u = 0; u < bt->nchildren; u++) { + /* + * Check that child nodes haven't already been seen. If they + * have then the tree has a cycle. + */ + for(tmp = head; tmp; tmp = tmp->next) + HDassert(H5F_addr_ne(tmp->addr, bt->child[u])); + + /* Add the child node to the end of the queue */ + tmp = (struct child_t *)H5MM_calloc(sizeof(struct child_t)); + HDassert(tmp); + tmp->addr = bt->child[u]; + tmp->level = bt->level - 1; + tail->next = tmp; + tail = tmp; + + /* Check that the keys are monotonically increasing */ + cmp = (type->cmp2)(H5B_NKEY(bt, shared, u), udata, H5B_NKEY(bt, shared, u + 1)); + HDassert(cmp < 0); + } /* end for */ + } /* end if */ + + /* Release node */ + status = H5AC_unprotect(f, H5AC_BT, cur->addr, bt, H5AC__NO_FLAGS_SET); + HDassert(status >= 0); bt = NULL; /* Make certain future references will be caught */ - /* Advance current location in queue */ - prev = cur; - cur = cur->next; + /* Advance current location in queue */ + prev = cur; + cur = cur->next; } /* end for */ /* Free all entries from queue */ while(head) { - tmp = head->next; - H5MM_xfree(head); - head = tmp; + tmp = head->next; + H5MM_xfree(head); + head = tmp; } /* end while */ done: diff --git a/src/H5Bmodule.h b/src/H5Bmodule.h index bc46752..c8e1546 100644 --- a/src/H5Bmodule.h +++ b/src/H5Bmodule.h @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Saturday, September 12, 2015 * * Purpose: This file contains declarations which define macros for the diff --git a/src/H5Bpkg.h b/src/H5Bpkg.h index a451cab..a57584e 100644 --- a/src/H5Bpkg.h +++ b/src/H5Bpkg.h @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> + * Programmer: Quincey Koziol * Thursday, May 15, 2003 * * Purpose: This file contains declarations which are visible only within diff --git a/src/H5Bprivate.h b/src/H5Bprivate.h index 5aa3628..55bf5b3 100644 --- a/src/H5Bprivate.h +++ b/src/H5Bprivate.h @@ -15,12 +15,10 @@ * * Created: H5Bprivate.h * Jul 10 1997 - * Robb Matzke <matzke@llnl.gov> + * Robb Matzke * * Purpose: Private non-prototype header. * - * Modifications: - * *------------------------------------------------------------------------- */ diff --git a/src/H5CXmodule.h b/src/H5CXmodule.h index f6a8f29..186f8aa 100644 --- a/src/H5CXmodule.h +++ b/src/H5CXmodule.h @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@lbl.gov> + * Programmer: Quincey Koziol * Sunday, February 25, 2018 * * Purpose: This file contains declarations which define macros for the diff --git a/src/H5Cmpio.c b/src/H5Cmpio.c index 0ac4c4f..199c494 100644 --- a/src/H5Cmpio.c +++ b/src/H5Cmpio.c @@ -18,7 +18,7 @@ * Quincey Koziol * * Purpose: Functions in this file implement support for parallel I/O for - * generic cache code. + * generic cache code. * *------------------------------------------------------------------------- */ @@ -28,20 +28,20 @@ /****************/ #include "H5Cmodule.h" /* This source code file is part of the H5C module */ -#define H5F_FRIEND /*suppress error about including H5Fpkg */ +#define H5F_FRIEND /*suppress error about including H5Fpkg */ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ +#include "H5private.h" /* Generic Functions */ #include "H5ACprivate.h" /* Metadata cache */ -#include "H5Cpkg.h" /* Cache */ +#include "H5Cpkg.h" /* Cache */ #include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fpkg.h" /* Files */ -#include "H5FDprivate.h" /* File drivers */ -#include "H5MMprivate.h" /* Memory management */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* Files */ +#include "H5FDprivate.h" /* File drivers */ +#include "H5MMprivate.h" /* Memory management */ #ifdef H5_HAVE_PARALLEL @@ -87,74 +87,74 @@ static herr_t H5C__flush_candidates_in_ring(H5F_t *f, H5C_ring_t ring, * * Purpose: Apply the supplied candidate list. * - * We used to do this by simply having each process write - * every mpi_size-th entry in the candidate list, starting - * at index mpi_rank, and mark all the others clean. + * We used to do this by simply having each process write + * every mpi_size-th entry in the candidate list, starting + * at index mpi_rank, and mark all the others clean. * - * However, this can cause unnecessary contention in a file - * system by increasing the number of processes writing to - * adjacent locations in the HDF5 file. + * However, this can cause unnecessary contention in a file + * system by increasing the number of processes writing to + * adjacent locations in the HDF5 file. * - * To attempt to minimize this, we now arange matters such - * that each process writes n adjacent entries in the - * candidate list, and marks all others clean. We must do - * this in such a fashion as to guarantee that each entry - * on the candidate list is written by exactly one process, - * and marked clean by all others. + * To attempt to minimize this, we now arange matters such + * that each process writes n adjacent entries in the + * candidate list, and marks all others clean. We must do + * this in such a fashion as to guarantee that each entry + * on the candidate list is written by exactly one process, + * and marked clean by all others. * - * To do this, first construct a table mapping mpi_rank - * to the index of the first entry in the candidate list to - * be written by the process of that mpi_rank, and then use - * the table to control which entries are written and which - * are marked as clean as a function of the mpi_rank. + * To do this, first construct a table mapping mpi_rank + * to the index of the first entry in the candidate list to + * be written by the process of that mpi_rank, and then use + * the table to control which entries are written and which + * are marked as clean as a function of the mpi_rank. * - * Note that the table must be identical on all processes, as - * all see the same candidate list, mpi_size, and mpi_rank -- - * the inputs used to construct the table. + * Note that the table must be identical on all processes, as + * all see the same candidate list, mpi_size, and mpi_rank -- + * the inputs used to construct the table. * - * We construct the table as follows. Let: + * We construct the table as follows. Let: * - * n = num_candidates / mpi_size; + * n = num_candidates / mpi_size; * - * m = num_candidates % mpi_size; + * m = num_candidates % mpi_size; * - * Now allocate an array of integers of length mpi_size + 1, - * and call this array candidate_assignment_table. + * Now allocate an array of integers of length mpi_size + 1, + * and call this array candidate_assignment_table. * - * Conceptually, if the number of candidates is a multiple - * of the mpi_size, we simply pass through the candidate list - * and assign n entries to each process to flush, with the - * index of the first entry to flush in the location in - * the candidate_assignment_table indicated by the mpi_rank - * of the process. + * Conceptually, if the number of candidates is a multiple + * of the mpi_size, we simply pass through the candidate list + * and assign n entries to each process to flush, with the + * index of the first entry to flush in the location in + * the candidate_assignment_table indicated by the mpi_rank + * of the process. * - * In the more common case in which the candidate list isn't - * isn't a multiple of the mpi_size, we pretend it is, and - * give num_candidates % mpi_size processes one extra entry - * each to make things work out. + * In the more common case in which the candidate list isn't + * isn't a multiple of the mpi_size, we pretend it is, and + * give num_candidates % mpi_size processes one extra entry + * each to make things work out. * - * Once the table is constructed, we determine the first and - * last entry this process is to flush as follows: + * Once the table is constructed, we determine the first and + * last entry this process is to flush as follows: * - * first_entry_to_flush = candidate_assignment_table[mpi_rank] + * first_entry_to_flush = candidate_assignment_table[mpi_rank] * - * last_entry_to_flush = - * candidate_assignment_table[mpi_rank + 1] - 1; + * last_entry_to_flush = + * candidate_assignment_table[mpi_rank + 1] - 1; * - * With these values determined, we simply scan through the - * candidate list, marking all entries in the range - * [first_entry_to_flush, last_entry_to_flush] for flush, - * and all others to be cleaned. + * With these values determined, we simply scan through the + * candidate list, marking all entries in the range + * [first_entry_to_flush, last_entry_to_flush] for flush, + * and all others to be cleaned. * - * Finally, we scan the LRU from tail to head, flushing - * or marking clean the candidate entries as indicated. - * If necessary, we scan the pinned list as well. + * Finally, we scan the LRU from tail to head, flushing + * or marking clean the candidate entries as indicated. + * If necessary, we scan the pinned list as well. * - * Note that this function will fail if any protected or - * clean entries appear on the candidate list. + * Note that this function will fail if any protected or + * clean entries appear on the candidate list. * - * This function is used in managing sync points, and - * shouldn't be used elsewhere. + * This function is used in managing sync points, and + * shouldn't be used elsewhere. * * Return: Success: SUCCEED * @@ -176,20 +176,20 @@ H5C_apply_candidate_list(H5F_t * f, int i; int m; unsigned n; - unsigned first_entry_to_flush; - unsigned last_entry_to_flush; - unsigned total_entries_to_clear = 0; - unsigned total_entries_to_flush = 0; + unsigned first_entry_to_flush; + unsigned last_entry_to_flush; + unsigned total_entries_to_clear = 0; + unsigned total_entries_to_flush = 0; unsigned * candidate_assignment_table = NULL; unsigned entries_to_flush[H5C_RING_NTYPES]; unsigned entries_to_clear[H5C_RING_NTYPES]; - haddr_t addr; - H5C_cache_entry_t * entry_ptr = NULL; + haddr_t addr; + H5C_cache_entry_t * entry_ptr = NULL; #if H5C_DO_SANITY_CHECKS - haddr_t last_addr; + haddr_t last_addr; #endif /* H5C_DO_SANITY_CHECKS */ #if H5C_APPLY_CANDIDATE_LIST__DEBUG - char tbl_buf[1024]; + char tbl_buf[1024]; #endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */ unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ @@ -413,10 +413,10 @@ done: * Function: H5C_construct_candidate_list__clean_cache * * Purpose: Construct the list of entries that should be flushed to - * clean all entries in the cache. + * clean all entries in the cache. * - * This function is used in managing sync points, and - * shouldn't be used elsewhere. + * This function is used in managing sync points, and + * shouldn't be used elsewhere. * * Return: Success: SUCCEED * @@ -457,7 +457,7 @@ H5C_construct_candidate_list__clean_cache(H5C_t * cache_ptr) H5C_cache_entry_t *entry_ptr; unsigned nominated_entries_count = 0; size_t nominated_entries_size = 0; - haddr_t nominated_addr; + haddr_t nominated_addr; HDassert( cache_ptr->slist_len > 0 ); @@ -522,10 +522,10 @@ done: * Function: H5C_construct_candidate_list__min_clean * * Purpose: Construct the list of entries that should be flushed to - * get the cache back within its min clean constraints. + * get the cache back within its min clean constraints. * - * This function is used in managing sync points, and - * shouldn't be used elsewhere. + * This function is used in managing sync points, and + * shouldn't be used elsewhere. * * Return: Success: SUCCEED * @@ -582,7 +582,7 @@ H5C_construct_candidate_list__min_clean(H5C_t * cache_ptr) (nominated_entries_count < cache_ptr->slist_len) && (entry_ptr != NULL) && (!entry_ptr->flush_me_last)) { - haddr_t nominated_addr; + haddr_t nominated_addr; HDassert( ! (entry_ptr->is_protected) ); HDassert( ! (entry_ptr->is_read_only) ); @@ -612,24 +612,24 @@ done: * Function: H5C_mark_entries_as_clean * * Purpose: When the H5C code is used to implement the metadata caches - * in PHDF5, only the cache with MPI_rank 0 is allowed to - * actually write entries to disk -- all other caches must - * retain dirty entries until they are advised that the - * entries are clean. + * in PHDF5, only the cache with MPI_rank 0 is allowed to + * actually write entries to disk -- all other caches must + * retain dirty entries until they are advised that the + * entries are clean. * - * This function exists to allow the H5C code to receive these - * notifications. + * This function exists to allow the H5C code to receive these + * notifications. * - * The function receives a list of entry base addresses - * which must refer to dirty entries in the cache. If any - * of the entries are either clean or don't exist, the - * function flags an error. + * The function receives a list of entry base addresses + * which must refer to dirty entries in the cache. If any + * of the entries are either clean or don't exist, the + * function flags an error. * - * The function scans the list of entries and flushes all - * those that are currently unprotected with the - * H5C__FLUSH_CLEAR_ONLY_FLAG. Those that are currently - * protected are flagged for clearing when they are - * unprotected. + * The function scans the list of entries and flushes all + * those that are currently unprotected with the + * H5C__FLUSH_CLEAR_ONLY_FLAG. Those that are currently + * protected are flagged for clearing when they are + * unprotected. * * Return: Non-negative on success/Negative on failure * @@ -644,22 +644,22 @@ H5C_mark_entries_as_clean(H5F_t * f, haddr_t * ce_array_ptr) { H5C_t * cache_ptr; - unsigned entries_cleared; + unsigned entries_cleared; unsigned pinned_entries_cleared; hbool_t progress; - unsigned entries_examined; - unsigned initial_list_len; - haddr_t addr; - unsigned pinned_entries_marked = 0; + unsigned entries_examined; + unsigned initial_list_len; + haddr_t addr; + unsigned pinned_entries_marked = 0; #if H5C_DO_SANITY_CHECKS - unsigned protected_entries_marked = 0; - unsigned other_entries_marked = 0; - haddr_t last_addr; + unsigned protected_entries_marked = 0; + unsigned other_entries_marked = 0; + haddr_t last_addr; #endif /* H5C_DO_SANITY_CHECKS */ - H5C_cache_entry_t * clear_ptr = NULL; - H5C_cache_entry_t * entry_ptr = NULL; + H5C_cache_entry_t * clear_ptr = NULL; + H5C_cache_entry_t * entry_ptr = NULL; unsigned u; - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -706,7 +706,7 @@ H5C_mark_entries_as_clean(H5F_t * f, if(entry_ptr == NULL) { #if H5C_DO_SANITY_CHECKS - HDfprintf(stdout, + HDfprintf(stdout, "H5C_mark_entries_as_clean: entry[%u] = %a not in cache.\n", u, addr); @@ -715,7 +715,7 @@ H5C_mark_entries_as_clean(H5F_t * f, } /* end if */ else if(!entry_ptr->is_dirty) { #if H5C_DO_SANITY_CHECKS - HDfprintf(stdout, + HDfprintf(stdout, "H5C_mark_entries_as_clean: entry %a is not dirty!?!\n", addr); #endif /* H5C_DO_SANITY_CHECKS */ @@ -735,13 +735,13 @@ H5C_mark_entries_as_clean(H5F_t * f, } /* end if */ entry_ptr->clear_on_unprotect = TRUE; - if(entry_ptr->is_pinned) - pinned_entries_marked++; + if(entry_ptr->is_pinned) + pinned_entries_marked++; #if H5C_DO_SANITY_CHECKS - else if(entry_ptr->is_protected) - protected_entries_marked++; - else - other_entries_marked++; + else if(entry_ptr->is_protected) + protected_entries_marked++; + else + other_entries_marked++; #endif /* H5C_DO_SANITY_CHECKS */ } } @@ -769,7 +769,7 @@ H5C_mark_entries_as_clean(H5F_t * f, * of the pre_serialize / serialize routines, this may * cease to be the case -- requiring a review of this * point. - * JRM -- 4/7/15 + * JRM -- 4/7/15 */ entries_cleared = 0; entries_examined = 0; @@ -873,9 +873,9 @@ done: herr_t H5C_clear_coll_entries(H5C_t *cache_ptr, hbool_t partial) { - uint32_t clear_cnt; - H5C_cache_entry_t * entry_ptr = NULL; - herr_t ret_value = SUCCEED; + uint32_t clear_cnt; + H5C_cache_entry_t * entry_ptr = NULL; + herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI_NOINIT @@ -1084,7 +1084,7 @@ done: /*------------------------------------------------------------------------- * Function: H5C__flush_candidate_entries * - * Purpose: Flush or clear (as indicated) the candidate entries that + * Purpose: Flush or clear (as indicated) the candidate entries that * have been marked in the metadata cache. In so doing, * observe rings and flush dependencies. * @@ -1113,9 +1113,9 @@ done: * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer - * 2/10/17 + * 2/10/17 * - * Changes: None. + * Changes: None. * *------------------------------------------------------------------------- */ @@ -1124,17 +1124,17 @@ H5C__flush_candidate_entries(H5F_t *f, unsigned entries_to_flush[H5C_RING_NTYPES unsigned entries_to_clear[H5C_RING_NTYPES]) { #if H5C_DO_SANITY_CHECKS - int i; - uint32_t index_len = 0; - size_t index_size = (size_t)0; - size_t clean_index_size = (size_t)0; - size_t dirty_index_size = (size_t)0; - size_t slist_size = (size_t)0; - uint32_t slist_len = 0; + int i; + uint32_t index_len = 0; + size_t index_size = (size_t)0; + size_t clean_index_size = (size_t)0; + size_t dirty_index_size = (size_t)0; + size_t slist_size = (size_t)0; + uint32_t slist_len = 0; #endif /* H5C_DO_SANITY_CHECKS */ - H5C_ring_t ring; + H5C_ring_t ring; H5C_t * cache_ptr; - herr_t ret_value = SUCCEED; + herr_t ret_value = SUCCEED; FUNC_ENTER_STATIC @@ -1164,7 +1164,7 @@ H5C__flush_candidate_entries(H5F_t *f, unsigned entries_to_flush[H5C_RING_NTYPES clean_index_size += cache_ptr->clean_index_ring_size[i]; dirty_index_size += cache_ptr->dirty_index_ring_size[i]; - slist_len += cache_ptr->slist_ring_len[i]; + slist_len += cache_ptr->slist_ring_len[i]; slist_size += cache_ptr->slist_ring_size[i]; } /* end for */ @@ -1206,7 +1206,7 @@ done: /*------------------------------------------------------------------------- * Function: H5C__flush_candidates_in_ring * - * Purpose: Flush or clear (as indicated) the candidate entries + * Purpose: Flush or clear (as indicated) the candidate entries * contained in the specified cache and ring. All candidate * entries in rings outside the specified ring must have been * flushed (or cleared) on entry. @@ -1235,7 +1235,7 @@ done: * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer - * 2/10/17 + * 2/10/17 * *------------------------------------------------------------------------- */ diff --git a/src/H5Dbtree2.c b/src/H5Dbtree2.c index 11bde2d..c254060 100644 --- a/src/H5Dbtree2.c +++ b/src/H5Dbtree2.c @@ -292,7 +292,7 @@ H5D__bt2_dst_context(void *_ctx) /* Free array for chunk dimension sizes */ if(ctx->dim) - (void)H5FL_ARR_FREE(uint32_t, ctx->dim); + H5FL_ARR_FREE(uint32_t, ctx->dim); /* Release callback context */ ctx = H5FL_FREE(H5D_bt2_ctx_t, ctx); diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index 21b114e..74bc5c6 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -1914,7 +1914,7 @@ H5D__create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t new_chunk_info->mspace_shared = FALSE; /* Copy the chunk's scaled coordinates */ - H5MM_memcpy(new_chunk_info->scaled, scaled, sizeof(hsize_t) * fm->f_ndims); + H5MM_memcpy(new_chunk_info->scaled, scaled, sizeof(hsize_t) * fm->f_ndims); new_chunk_info->scaled[fm->f_ndims] = 0; /* Insert the new chunk into the skip list */ @@ -2095,7 +2095,7 @@ H5D__create_chunk_mem_map_hyper(const H5D_chunk_map_t *fm) for(u = 0; u < fm->f_ndims; u++) { /* Compensate for the chunk offset */ H5_CHECK_OVERFLOW(coords[u], hsize_t, hssize_t); - chunk_adjust[u] = adjust[u] - (hssize_t)coords[u]; /*lint !e771 The adjust array will always be initialized */ + chunk_adjust[u] = adjust[u] - (hssize_t)coords[u]; } /* end for */ /* Adjust the selection */ @@ -2329,7 +2329,7 @@ H5D__chunk_mem_cb(void H5_ATTR_UNUSED *elem, const H5T_t H5_ATTR_UNUSED *type, u { H5D_chunk_map_t *fm = (H5D_chunk_map_t *)_fm; /* File<->memory chunk mapping info */ H5D_chunk_info_t *chunk_info; /* Chunk information for current chunk */ - hsize_t coords_in_mem[H5S_MAX_RANK]; /* Coordinates of element in memory */ + hsize_t coords_in_mem[H5S_MAX_RANK]; /* Coordinates of element in memory */ hsize_t chunk_index; /* Chunk index */ herr_t ret_value = SUCCEED; /* Return value */ @@ -3147,8 +3147,8 @@ done: /*------------------------------------------------------------------------- * Function: H5D__chunk_hash_val * - * Purpose: To calculate an index based on the dataset's scaled - * coordinates and sizes of the faster dimensions. + * Purpose: To calculate an index based on the dataset's scaled + * coordinates and sizes of the faster dimensions. * * Return: Hash value index * @@ -5991,7 +5991,7 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) if((udata->common.layout->flags & H5O_LAYOUT_CHUNK_DONT_FILTER_PARTIAL_BOUND_CHUNKS) && H5D__chunk_is_partial_edge_chunk(udata->dset_ndims, udata->common.layout->dim, chunk_rec->scaled, udata->dset_dims)) must_filter = FALSE; - } /* end if */ + } /* Check parameter for type conversion */ if(udata->do_convert) { @@ -6029,7 +6029,7 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) HDassert(!H5F_addr_defined(chunk_rec->chunk_addr)); H5MM_memcpy(buf, udata->chunk, nbytes); udata->chunk = NULL; - } /* end if */ + } else { H5D_rdcc_ent_t *ent = NULL; /* Cache entry */ unsigned idx; /* Index of chunk in cache, if present */ @@ -6062,13 +6062,13 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) H5_CHECKED_ASSIGN(nbytes, size_t, shared_fo->layout.u.chunk.size, uint32_t); H5MM_memcpy(buf, ent->chunk, nbytes); - } /* end if */ + } else { /* read chunk data from the source file */ if(H5F_block_read(udata->file_src, H5FD_MEM_DRAW, chunk_rec->chunk_addr, nbytes, buf) < 0) HGOTO_ERROR(H5E_IO, H5E_READERROR, H5_ITER_ERROR, "unable to read raw data chunk") - } /* end else */ - } /* end else */ + } + } /* Need to uncompress filtered variable-length & reference data elements that are not found in chunk cache */ if(must_filter && (is_vlen || fix_ref) && !udata->chunk_in_cache) { @@ -7201,7 +7201,7 @@ H5D__get_num_chunks(const H5D_t *dset, const H5S_t H5_ATTR_UNUSED *space, hsize_ if((dset->shared->layout.storage.u.chunk.ops->iterate)(&idx_info, H5D__get_num_chunks_cb, &num_chunks) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve allocated chunk information from index") *nchunks = num_chunks; - } /* end else */ + } done: FUNC_LEAVE_NOAPI_TAG(ret_value) @@ -7248,7 +7248,7 @@ H5D__get_chunk_info_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) /* Stop iterating */ ret_value = H5_ITER_STOP; - } /* end if */ + } /* Go to the next chunk */ else chunk_info->curr_idx++; diff --git a/src/H5Dearray.c b/src/H5Dearray.c index fbd3b04..f1a6a5e 100644 --- a/src/H5Dearray.c +++ b/src/H5Dearray.c @@ -11,10 +11,10 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -/* Programmer: Quincey Koziol <koziol@hdfgroup.org> - * Tuesday, January 27, 2009 +/* Programmer: Quincey Koziol + * Tuesday, January 27, 2009 * - * Purpose: Extensible array indexed (chunked) I/O functions. The chunks + * Purpose: Extensible array indexed (chunked) I/O functions. The chunks * are given a single-dimensional index which is used as the * offset in an extensible array that maps a chunk coordinate to * a disk address. @@ -183,7 +183,7 @@ const H5EA_class_t H5EA_CLS_CHUNK[1]={{ H5D__earray_fill, /* Fill block of missing elements callback */ H5D__earray_encode, /* Element encoding callback */ H5D__earray_decode, /* Element decoding callback */ - H5D__earray_debug, /* Element debugging callback */ + H5D__earray_debug, /* Element debugging callback */ H5D__earray_crt_dbg_context, /* Create debugging context */ H5D__earray_dst_dbg_context /* Destroy debugging context */ }}; @@ -216,14 +216,14 @@ H5FL_DEFINE_STATIC(H5D_earray_ctx_ud_t); /*------------------------------------------------------------------------- - * Function: H5D__earray_crt_context + * Function: H5D__earray_crt_context * - * Purpose: Create context for callbacks + * Purpose: Create context for callbacks * - * Return: Success: non-NULL - * Failure: NULL + * Return: Success: non-NULL + * Failure: NULL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -265,14 +265,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_dst_context + * Function: H5D__earray_dst_context * - * Purpose: Destroy context for callbacks + * Purpose: Destroy context for callbacks * - * Return: Success: non-NULL - * Failure: NULL + * Return: Success: non-NULL + * Failure: NULL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -295,14 +295,14 @@ H5D__earray_dst_context(void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__earray_fill + * Function: H5D__earray_fill * - * Purpose: Fill "missing elements" in block of elements + * Purpose: Fill "missing elements" in block of elements * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, January 27, 2009 * *------------------------------------------------------------------------- @@ -325,14 +325,14 @@ H5D__earray_fill(void *nat_blk, size_t nelmts) /*------------------------------------------------------------------------- - * Function: H5D__earray_encode + * Function: H5D__earray_encode * - * Purpose: Encode an element from "native" to "raw" form + * Purpose: Encode an element from "native" to "raw" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, January 27, 2009 * *------------------------------------------------------------------------- @@ -369,14 +369,14 @@ H5D__earray_encode(void *raw, const void *_elmt, size_t nelmts, void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__earray_decode + * Function: H5D__earray_decode * - * Purpose: Decode an element from "raw" to "native" form + * Purpose: Decode an element from "raw" to "native" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -413,14 +413,14 @@ H5D__earray_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__earray_debug + * Function: H5D__earray_debug * - * Purpose: Display an element for debugging + * Purpose: Display an element for debugging * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -447,14 +447,14 @@ H5D__earray_debug(FILE *stream, int indent, int fwidth, hsize_t idx, /*------------------------------------------------------------------------- - * Function: H5D__earray_filt_fill + * Function: H5D__earray_filt_fill * - * Purpose: Fill "missing elements" in block of elements + * Purpose: Fill "missing elements" in block of elements * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -478,14 +478,14 @@ H5D__earray_filt_fill(void *nat_blk, size_t nelmts) /*------------------------------------------------------------------------- - * Function: H5D__earray_filt_encode + * Function: H5D__earray_filt_encode * - * Purpose: Encode an element from "native" to "raw" form + * Purpose: Encode an element from "native" to "raw" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -525,14 +525,14 @@ H5D__earray_filt_encode(void *_raw, const void *_elmt, size_t nelmts, void *_ctx /*------------------------------------------------------------------------- - * Function: H5D__earray_filt_decode + * Function: H5D__earray_filt_decode * - * Purpose: Decode an element from "raw" to "native" form + * Purpose: Decode an element from "raw" to "native" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -571,14 +571,14 @@ H5D__earray_filt_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx /*------------------------------------------------------------------------- - * Function: H5D__earray_filt_debug + * Function: H5D__earray_filt_debug * - * Purpose: Display an element for debugging + * Purpose: Display an element for debugging * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -606,15 +606,15 @@ H5D__earray_filt_debug(FILE *stream, int indent, int fwidth, hsize_t idx, /*------------------------------------------------------------------------- - * Function: H5D__earray_crt_dbg_context + * Function: H5D__earray_crt_dbg_context * - * Purpose: Create context for debugging callback - * (get the layout message in the specified object header) + * Purpose: Create context for debugging callback + * (get the layout message in the specified object header) * - * Return: Success: non-NULL - * Failure: NULL + * Return: Success: non-NULL + * Failure: NULL * - * Programmer: Vailin Choi; July 2010 + * Programmer: Vailin Choi; July 2010 * *------------------------------------------------------------------------- */ @@ -680,15 +680,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_dst_dbg_context + * Function: H5D__earray_dst_dbg_context * - * Purpose: Destroy context for debugging callback - * (free the layout message from the specified object header) + * Purpose: Destroy context for debugging callback + * (free the layout message from the specified object header) * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi; July 2010 + * Programmer: Vailin Choi; July 2010 * *------------------------------------------------------------------------- */ @@ -710,16 +710,16 @@ H5D__earray_dst_dbg_context(void *_dbg_ctx) /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_depend + * Function: H5D__earray_idx_depend * - * Purpose: Create flush dependency between extensible array and dataset's + * Purpose: Create flush dependency between extensible array and dataset's * object header. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol - * Tuesday, June 2, 2009 + * Programmer: Quincey Koziol + * Tuesday, June 2, 2009 * *------------------------------------------------------------------------- */ @@ -772,20 +772,20 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_open + * Function: H5D__earray_idx_open * - * Purpose: Opens an existing extensible array. + * Purpose: Opens an existing extensible array. * - * Note: This information is passively initialized from each index + * Note: This information is passively initialized from each index * operation callback because those abstract chunk index operations * are designed to work with the v1 B-tree chunk indices also, * which don't require an 'open' for the data structure. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol - * Thursday, January 29, 2009 + * Programmer: Quincey Koziol + * Thursday, January 29, 2009 * *------------------------------------------------------------------------- */ @@ -814,7 +814,7 @@ H5D__earray_idx_open(const H5D_chk_idx_info_t *idx_info) /* Open the extensible array for the chunk index */ if(NULL == (idx_info->storage->u.earray.ea = H5EA_open(idx_info->f, idx_info->storage->idx_addr, &udata))) - HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open extensible array") + HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open extensible array") /* Check for SWMR writes to the file */ if(H5F_INTENT(idx_info->f) & H5F_ACC_SWMR_WRITE) @@ -827,13 +827,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_init + * Function: H5D__earray_idx_init * - * Purpose: Initialize the indexing information for a dataset. + * Purpose: Initialize the indexing information for a dataset. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Wednesday, May 27, 2009 * *------------------------------------------------------------------------- @@ -862,7 +862,7 @@ H5D__earray_idx_init(const H5D_chk_idx_info_t *idx_info, const H5S_t *space, /* Get the dim info for dataset */ if((sndims = H5S_get_simple_extent_dims(space, NULL, max_dims)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataspace dimensions") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataspace dimensions") H5_CHECKED_ASSIGN(ndims, unsigned, sndims, int); /* Find the rank of the unlimited dimension */ @@ -895,20 +895,20 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_create + * Function: H5D__earray_idx_create * - * Purpose: Creates a new indexed-storage extensible array and initializes + * Purpose: Creates a new indexed-storage extensible array and initializes * the layout struct with information about the storage. The - * struct should be immediately written to the object header. + * struct should be immediately written to the object header. * - * This function must be called before passing LAYOUT to any of - * the other indexed storage functions! + * This function must be called before passing LAYOUT to any of + * the other indexed storage functions! * - * Return: Non-negative on success (with the LAYOUT argument initialized - * and ready to write to an object header). Negative on failure. + * Return: Non-negative on success (with the LAYOUT argument initialized + * and ready to write to an object header). Negative on failure. * - * Programmer: Quincey Koziol - * Tuesday, January 27, 2009 + * Programmer: Quincey Koziol + * Tuesday, January 27, 2009 * *------------------------------------------------------------------------- */ @@ -965,11 +965,11 @@ H5D__earray_idx_create(const H5D_chk_idx_info_t *idx_info) /* Create the extensible array for the chunk index */ if(NULL == (idx_info->storage->u.earray.ea = H5EA_create(idx_info->f, &cparam, &udata))) - HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create extensible array") + HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create extensible array") /* Get the address of the extensible array in file */ if(H5EA_get_addr(idx_info->storage->u.earray.ea, &(idx_info->storage->idx_addr)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array address") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array address") /* Check for SWMR writes to the file */ if(H5F_INTENT(idx_info->f) & H5F_ACC_SWMR_WRITE) @@ -982,14 +982,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_is_space_alloc + * Function: H5D__earray_idx_is_space_alloc * - * Purpose: Query if space is allocated for index method + * Purpose: Query if space is allocated for index method * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Thursday, January 29, 2009 + * Programmer: Quincey Koziol + * Thursday, January 29, 2009 * *------------------------------------------------------------------------- */ @@ -1006,13 +1006,13 @@ H5D__earray_idx_is_space_alloc(const H5O_storage_chunk_t *storage) /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_insert + * Function: H5D__earray_idx_insert * - * Purpose: Insert chunk address into the indexing structure. + * Purpose: Insert chunk address into the indexing structure. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Vailin Choi; May 2014 + * Programmer: Vailin Choi; May 2014 * *------------------------------------------------------------------------- */ @@ -1021,7 +1021,7 @@ H5D__earray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata const H5D_t H5_ATTR_UNUSED *dset) { H5EA_t *ea; /* Pointer to extensible array structure */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1046,26 +1046,26 @@ H5D__earray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata ea = idx_info->storage->u.earray.ea; if(!H5F_addr_defined(udata->chunk_block.offset)) - HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "The chunk should have allocated already") + HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "The chunk should have allocated already") if(udata->chunk_idx != (udata->chunk_idx & 0xffffffff)) /* negative value */ - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "chunk index must be less than 2^32") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "chunk index must be less than 2^32") /* Check for filters on chunks */ if(idx_info->pline->nused > 0) { - H5D_earray_filt_elmt_t elmt; /* Extensible array element */ + H5D_earray_filt_elmt_t elmt; /* Extensible array element */ - elmt.addr = udata->chunk_block.offset; + elmt.addr = udata->chunk_block.offset; H5_CHECKED_ASSIGN(elmt.nbytes, uint32_t, udata->chunk_block.length, hsize_t); - elmt.filter_mask = udata->filter_mask; + elmt.filter_mask = udata->filter_mask; - /* Set the info for the chunk */ - if(H5EA_set(ea, udata->chunk_idx, &elmt) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk info") + /* Set the info for the chunk */ + if(H5EA_set(ea, udata->chunk_idx, &elmt) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk info") } /* end if */ else { - /* Set the address for the chunk */ - if(H5EA_set(ea, udata->chunk_idx, &udata->chunk_block.offset) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk address") + /* Set the address for the chunk */ + if(H5EA_set(ea, udata->chunk_idx, &udata->chunk_block.offset) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk address") } /* end else */ done: @@ -1074,15 +1074,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_get_addr + * Function: H5D__earray_idx_get_addr * - * Purpose: Get the file address of a chunk if file space has been - * assigned. Save the retrieved information in the udata - * supplied. + * Purpose: Get the file address of a chunk if file space has been + * assigned. Save the retrieved information in the udata + * supplied. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -1092,7 +1092,7 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda { H5EA_t *ea; /* Pointer to extensible array structure */ hsize_t idx; /* Array index of chunk */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1118,13 +1118,13 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda /* Check for unlimited dim. not being the slowest-changing dim. */ if(idx_info->layout->u.earray.unlim_dim > 0) { - hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */ + hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */ unsigned ndims = (idx_info->layout->ndims - 1); /* Number of dimensions */ - unsigned u; + unsigned u; - /* Compute coordinate offset from scaled offset */ - for(u = 0; u < ndims; u++) - swizzled_coords[u] = udata->common.scaled[u] * idx_info->layout->dim[u]; + /* Compute coordinate offset from scaled offset */ + for(u = 0; u < ndims; u++) + swizzled_coords[u] = udata->common.scaled[u] * idx_info->layout->dim[u]; H5VM_swizzle_coords(hsize_t, swizzled_coords, idx_info->layout->u.earray.unlim_dim); @@ -1157,12 +1157,12 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get chunk address") /* Update the other (constant) information for the chunk */ - udata->chunk_block.length = idx_info->layout->size; + udata->chunk_block.length = idx_info->layout->size; udata->filter_mask = 0; } /* end else */ if(!H5F_addr_defined(udata->chunk_block.offset)) - udata->chunk_block.length = 0; + udata->chunk_block.length = 0; done: FUNC_LEAVE_NOAPI(ret_value) @@ -1170,14 +1170,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_resize + * Function: H5D__earray_idx_resize * - * Purpose: Calculate/setup the swizzled down chunk array, used for chunk + * Purpose: Calculate/setup the swizzled down chunk array, used for chunk * index calculations. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, July 23, 2009 * *------------------------------------------------------------------------- @@ -1224,13 +1224,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_iterate_cb + * Function: H5D__earray_idx_iterate_cb * - * Purpose: Callback routine for extensible array element iteration. + * Purpose: Callback routine for extensible array element iteration. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Vailin Choi; Feb 2015 + * Programmer: Vailin Choi; Feb 2015 * *------------------------------------------------------------------------- */ @@ -1257,8 +1257,8 @@ H5D__earray_idx_iterate_cb(hsize_t H5_ATTR_UNUSED idx, const void *_elmt, void * /* Make "generic chunk" callback */ if(H5F_addr_defined(udata->chunk_rec.chunk_addr)) - if((ret_value = (udata->cb)(&udata->chunk_rec, udata->udata)) < 0) - HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback"); + if((ret_value = (udata->cb)(&udata->chunk_rec, udata->udata)) < 0) + HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback"); /* Update coordinates of chunk in dataset */ ndims = udata->common.layout->ndims - 1; @@ -1283,18 +1283,18 @@ H5D__earray_idx_iterate_cb(hsize_t H5_ATTR_UNUSED idx, const void *_elmt, void * /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_iterate + * Function: H5D__earray_idx_iterate * - * Purpose: Iterate over the chunks in an index, making a callback + * Purpose: Iterate over the chunks in an index, making a callback * for each one. * - * Note: This implementation is slow, particularly for sparse + * Note: This implementation is slow, particularly for sparse * extensible arrays, replace it with call to H5EA_iterate() * when that's available. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -1332,27 +1332,27 @@ H5D__earray_idx_iterate(const H5D_chk_idx_info_t *idx_info, /* Get the extensible array statistics */ if(H5EA_get_stats(ea, &ea_stat) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics") if(ea_stat.stored.max_idx_set > 0) { H5D_earray_it_ud_t udata; /* User data for iteration callback */ - /* Initialize userdata */ - HDmemset(&udata, 0, sizeof udata); - udata.common.layout = idx_info->layout; - udata.common.storage = idx_info->storage; + /* Initialize userdata */ + HDmemset(&udata, 0, sizeof udata); + udata.common.layout = idx_info->layout; + udata.common.storage = idx_info->storage; HDmemset(&udata.chunk_rec, 0, sizeof(udata.chunk_rec)); udata.filtered = (idx_info->pline->nused > 0); if(!udata.filtered) { udata.chunk_rec.nbytes = idx_info->layout->size; udata.chunk_rec.filter_mask = 0; } /* end if */ - udata.cb = chunk_cb; - udata.udata = chunk_udata; + udata.cb = chunk_cb; + udata.udata = chunk_udata; /* Iterate over the extensible array elements */ - if((ret_value = H5EA_iterate(ea, H5D__earray_idx_iterate_cb, &udata)) < 0) - HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over fixed array chunk index"); + if((ret_value = H5EA_iterate(ea, H5D__earray_idx_iterate_cb, &udata)) < 0) + HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over fixed array chunk index"); } /* end if */ done: @@ -1361,13 +1361,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_remove + * Function: H5D__earray_idx_remove * - * Purpose: Remove chunk from index. + * Purpose: Remove chunk from index. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -1377,7 +1377,7 @@ H5D__earray_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t { H5EA_t *ea; /* Pointer to extensible array structure */ hsize_t idx; /* Array index of chunk */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1404,13 +1404,13 @@ H5D__earray_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t /* Check for unlimited dim. not being the slowest-changing dim. */ if(idx_info->layout->u.earray.unlim_dim > 0) { - hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */ + hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */ unsigned ndims = (idx_info->layout->ndims - 1); /* Number of dimensions */ - unsigned u; + unsigned u; - /* Compute coordinate offset from scaled offset */ - for(u = 0; u < ndims; u++) - swizzled_coords[u] = udata->scaled[u] * idx_info->layout->dim[u]; + /* Compute coordinate offset from scaled offset */ + for(u = 0; u < ndims; u++) + swizzled_coords[u] = udata->scaled[u] * idx_info->layout->dim[u]; H5VM_swizzle_coords(hsize_t, swizzled_coords, idx_info->layout->u.earray.unlim_dim); @@ -1472,14 +1472,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_delete_cb + * Function: H5D__earray_idx_delete_cb * - * Purpose: Delete space for chunk in file + * Purpose: Delete space for chunk in file * - * Return: Success: Non-negative - * Failure: negative + * Return: Success: Non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1509,19 +1509,19 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_delete + * Function: H5D__earray_idx_delete * - * Purpose: Delete index and raw data storage for entire dataset + * Purpose: Delete index and raw data storage for entire dataset * (i.e. all chunks) * - * Note: This implementation is slow, particularly for sparse + * Note: This implementation is slow, particularly for sparse * extensible arrays, replace it with call to H5EA_iterate() * when that's available. * - * Return: Success: Non-negative - * Failure: negative + * Return: Success: Non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 29, 2009 * *------------------------------------------------------------------------- @@ -1571,13 +1571,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_copy_setup + * Function: H5D__earray_idx_copy_setup * - * Purpose: Set up any necessary information for copying chunks + * Purpose: Set up any necessary information for copying chunks * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1626,13 +1626,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_copy_shutdown + * Function: H5D__earray_idx_copy_shutdown * - * Purpose: Shutdown any information from copying chunks + * Purpose: Shutdown any information from copying chunks * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1704,7 +1704,7 @@ H5D__earray_idx_size(const H5D_chk_idx_info_t *idx_info, hsize_t *index_size) /* Get the extensible array statistics */ if(H5EA_get_stats(ea, &ea_stat) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics") /* Set the size of the extensible array */ *index_size = ea_stat.computed.hdr_size + ea_stat.computed.index_blk_size @@ -1722,13 +1722,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_reset + * Function: H5D__earray_idx_reset * - * Purpose: Reset indexing information. + * Purpose: Reset indexing information. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1743,7 +1743,7 @@ H5D__earray_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr) /* Reset index info */ if(reset_addr) { - storage->idx_addr = HADDR_UNDEF; + storage->idx_addr = HADDR_UNDEF; storage->u.earray.dset_ohdr_addr = HADDR_UNDEF; } /* end if */ storage->u.earray.ea = NULL; @@ -1753,13 +1753,13 @@ H5D__earray_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr) /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_dump + * Function: H5D__earray_idx_dump * - * Purpose: Dump indexing information to a stream. + * Purpose: Dump indexing information to a stream. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1780,13 +1780,13 @@ H5D__earray_idx_dump(const H5O_storage_chunk_t *storage, FILE *stream) /*------------------------------------------------------------------------- - * Function: H5D__earray_idx_dest + * Function: H5D__earray_idx_dest * - * Purpose: Release indexing information in memory. + * Purpose: Release indexing information in memory. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, January 31, 2009 * *------------------------------------------------------------------------- @@ -1806,7 +1806,7 @@ H5D__earray_idx_dest(const H5D_chk_idx_info_t *idx_info) /* Check if the extensible array is open */ if(idx_info->storage->u.earray.ea) { - /* Patch the top level file pointer contained in ea if needed */ + /* Patch the top level file pointer contained in ea if needed */ if(H5EA_patch_file(idx_info->storage->u.earray.ea, idx_info->f) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't patch earray file pointer") diff --git a/src/H5Dfarray.c b/src/H5Dfarray.c index 348aeb3..d83c191 100644 --- a/src/H5Dfarray.c +++ b/src/H5Dfarray.c @@ -261,14 +261,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__farray_dst_context + * Function: H5D__farray_dst_context * - * Purpose: Destroy context for callbacks + * Purpose: Destroy context for callbacks * - * Return: Success: non-NULL - * Failure: NULL + * Return: Success: non-NULL + * Failure: NULL * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -291,14 +291,14 @@ H5D__farray_dst_context(void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__farray_fill + * Function: H5D__farray_fill * - * Purpose: Fill "missing elements" in block of elements + * Purpose: Fill "missing elements" in block of elements * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -321,14 +321,14 @@ H5D__farray_fill(void *nat_blk, size_t nelmts) /*------------------------------------------------------------------------- - * Function: H5D__farray_encode + * Function: H5D__farray_encode * - * Purpose: Encode an element from "native" to "raw" form + * Purpose: Encode an element from "native" to "raw" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -365,14 +365,14 @@ H5D__farray_encode(void *raw, const void *_elmt, size_t nelmts, void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__farray_decode + * Function: H5D__farray_decode * - * Purpose: Decode an element from "raw" to "native" form + * Purpose: Decode an element from "raw" to "native" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -409,14 +409,14 @@ H5D__farray_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx) /*------------------------------------------------------------------------- - * Function: H5D__farray_debug + * Function: H5D__farray_debug * - * Purpose: Display an element for debugging + * Purpose: Display an element for debugging * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -443,23 +443,23 @@ H5D__farray_debug(FILE *stream, int indent, int fwidth, hsize_t idx, /*------------------------------------------------------------------------- - * Function: H5D__farray_crt_dbg_context + * Function: H5D__farray_crt_dbg_context * - * Purpose: Create context for debugging callback - * (get the layout message in the specified object header) + * Purpose: Create context for debugging callback + * (get the layout message in the specified object header) * - * Return: Success: non-NULL - * Failure: NULL + * Return: Success: non-NULL + * Failure: NULL * - * Programmer: Vailin Choi - * 5th August, 2009 + * Programmer: Vailin Choi + * 5th August, 2009 * *------------------------------------------------------------------------- */ static void * H5D__farray_crt_dbg_context(H5F_t *f, haddr_t obj_addr) { - H5D_farray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */ + H5D_farray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */ H5O_loc_t obj_loc; /* Pointer to an object's location */ hbool_t obj_opened = FALSE; /* Flag to indicate that the object header was opened */ H5O_layout_t layout; /* Layout message */ @@ -518,16 +518,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__farray_dst_dbg_context + * Function: H5D__farray_dst_dbg_context * - * Purpose: Destroy context for debugging callback - * (free the layout message from the specified object header) + * Purpose: Destroy context for debugging callback + * (free the layout message from the specified object header) * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol - * 24th September, 2009 + * Programmer: Quincey Koziol + * 24th September, 2009 * *------------------------------------------------------------------------- */ @@ -549,14 +549,14 @@ H5D__farray_dst_dbg_context(void *_dbg_ctx) /*------------------------------------------------------------------------- - * Function: H5D__farray_filt_fill + * Function: H5D__farray_filt_fill * - * Purpose: Fill "missing elements" in block of elements + * Purpose: Fill "missing elements" in block of elements * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -580,14 +580,14 @@ H5D__farray_filt_fill(void *nat_blk, size_t nelmts) /*------------------------------------------------------------------------- - * Function: H5D__farray_filt_encode + * Function: H5D__farray_filt_encode * - * Purpose: Encode an element from "native" to "raw" form + * Purpose: Encode an element from "native" to "raw" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -627,14 +627,14 @@ H5D__farray_filt_encode(void *_raw, const void *_elmt, size_t nelmts, void *_ctx /*------------------------------------------------------------------------- - * Function: H5D__farray_filt_decode + * Function: H5D__farray_filt_decode * - * Purpose: Decode an element from "raw" to "native" form + * Purpose: Decode an element from "raw" to "native" form * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -673,14 +673,14 @@ H5D__farray_filt_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx /*------------------------------------------------------------------------- - * Function: H5D__farray_filt_debug + * Function: H5D__farray_filt_debug * - * Purpose: Display an element for debugging + * Purpose: Display an element for debugging * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -708,15 +708,15 @@ H5D__farray_filt_debug(FILE *stream, int indent, int fwidth, hsize_t idx, /*------------------------------------------------------------------------- - * Function: H5D__farray_idx_depend + * Function: H5D__farray_idx_depend * - * Purpose: Create flush dependency between fixed array and dataset's + * Purpose: Create flush dependency between fixed array and dataset's * object header. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -798,15 +798,15 @@ H5D__farray_idx_init(const H5D_chk_idx_info_t *idx_info, const H5S_t H5_ATTR_UNU /*------------------------------------------------------------------------- - * Function: H5D__farray_idx_open + * Function: H5D__farray_idx_open * - * Purpose: Opens an existing fixed array and initializes + * Purpose: Opens an existing fixed array and initializes * the layout struct with information about the storage. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -849,19 +849,19 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__farray_idx_create + * Function: H5D__farray_idx_create * - * Purpose: Creates a new indexed-storage fixed array and initializes + * Purpose: Creates a new indexed-storage fixed array and initializes * the layout struct with information about the storage. The - * struct should be immediately written to the object header. + * struct should be immediately written to the object header. * - * This function must be called before passing LAYOUT to any of - * the other indexed storage functions! + * This function must be called before passing LAYOUT to any of + * the other indexed storage functions! * - * Return: Non-negative on success (with the LAYOUT argument initialized - * and ready to write to an object header). Negative on failure. + * Return: Non-negative on success (with the LAYOUT argument initialized + * and ready to write to an object header). Negative on failure. * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -869,9 +869,9 @@ done: static herr_t H5D__farray_idx_create(const H5D_chk_idx_info_t *idx_info) { - H5FA_create_t cparam; /* Fixed array creation parameters */ + H5FA_create_t cparam; /* Fixed array creation parameters */ H5D_farray_ctx_ud_t udata; /* User data for fixed array create call */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -930,13 +930,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__farray_idx_is_space_alloc + * Function: H5D__farray_idx_is_space_alloc * - * Purpose: Query if space is allocated for index method + * Purpose: Query if space is allocated for index method * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Vailin Choi + * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- @@ -954,13 +954,13 @@ H5D__farray_idx_is_space_alloc(const H5O_storage_chunk_t *storage) /*------------------------------------------------------------------------- - * Function: H5D__farray_idx_insert + * Function: H5D__farray_idx_insert * - * Purpose: Insert chunk address into the indexing structure. + * Purpose: Insert chunk address into the indexing structure. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Vailin Choi; 5 May 2014 + * Programmer: Vailin Choi; 5 May 2014 * *------------------------------------------------------------------------- */ @@ -968,8 +968,8 @@ static herr_t H5D__farray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata, const H5D_t H5_ATTR_UNUSED *dset) { - H5FA_t *fa; /* Pointer to fixed array structure */ - herr_t ret_value = SUCCEED; /* Return value */ + H5FA_t *fa; /* Pointer to fixed array structure */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC diff --git a/src/H5Dio.c b/src/H5Dio.c index 84b7e7a..a972e00 100644 --- a/src/H5Dio.c +++ b/src/H5Dio.c @@ -149,7 +149,7 @@ done: * The PLIST_ID can be the constant H5P_DEFAULT in which * case the default data transfer properties are used. * - * Return: SUCCEED/FAIL + * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Thursday, December 4, 1997 @@ -271,7 +271,7 @@ done: * The PLIST_ID can be the constant H5P_DEFAULT in which * case the default data transfer properties are used. * - * Return: SUCCEED/FAIL + * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Thursday, December 4, 1997 @@ -280,7 +280,7 @@ done: */ herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, - hid_t file_space_id, hid_t dxpl_id, const void *buf) + hid_t file_space_id, hid_t dxpl_id, const void *buf) { H5VL_object_t *vol_obj = NULL; herr_t ret_value = SUCCEED; /* Return value */ @@ -410,7 +410,7 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, /* projected mem space must be discarded at the */ /* end of the function to avoid a memory leak. */ H5D_storage_t store; /* union of EFL and chunk pointer in file space */ - hsize_t nelmts; /* total number of elmts */ + hsize_t nelmts; /* total number of elmts */ hbool_t io_op_init = FALSE; /* Whether the I/O op has been initialized */ char fake_char; /* Temporary variable for NULL buffer pointers */ herr_t ret_value = SUCCEED; /* Return value */ @@ -621,7 +621,7 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space, /* projected mem space must be discarded at the */ /* end of the function to avoid a memory leak. */ H5D_storage_t store; /* union of EFL and chunk pointer in file space */ - hsize_t nelmts; /* total number of elmts */ + hsize_t nelmts; /* total number of elmts */ hbool_t io_op_init = FALSE; /* Whether the I/O op has been initialized */ char fake_char; /* Temporary variable for NULL buffer pointers */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1153,10 +1153,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset, /* Append each of the "reason for breaking collective I/O" error messages to the * local and global no collective cause strings */ - for (cause = 1, idx = 0; - (cause < H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE) && - (idx < cause_strings_len); - cause <<= 1, idx++) { + for (cause = 1, idx = 0; (cause < H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE) && (idx < cause_strings_len); cause <<= 1, idx++) { size_t cause_strlen = HDstrlen(cause_strings[idx]); if (cause & local_no_collective_cause) { @@ -1166,8 +1163,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset, if(local_error_message_previously_written) HDstrncat(local_no_collective_cause_string, "; ", 2); - HDstrncat(local_no_collective_cause_string, - cause_strings[idx], cause_strlen); + HDstrncat(local_no_collective_cause_string, cause_strings[idx], cause_strlen); local_error_message_previously_written = TRUE; } /* end if */ @@ -1179,8 +1175,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset, if(global_error_message_previously_written) HDstrncat(global_no_collective_cause_string, "; ", 2); - HDstrncat(global_no_collective_cause_string, - cause_strings[idx], cause_strlen); + HDstrncat(global_no_collective_cause_string, cause_strings[idx], cause_strlen); global_error_message_previously_written = TRUE; } /* end if */ diff --git a/src/H5Dlayout.c b/src/H5Dlayout.c index e257140..679a33b 100644 --- a/src/H5Dlayout.c +++ b/src/H5Dlayout.c @@ -66,7 +66,7 @@ const unsigned H5O_layout_ver_bounds[] = { - + /*------------------------------------------------------------------------- * Function: H5D__layout_set_io_ops * @@ -153,7 +153,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__layout_set_io_ops() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_meta_size * @@ -284,7 +284,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__layout_meta_size() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_set_version * @@ -322,7 +322,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__layout_set_version() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_set_latest_indexing * @@ -362,7 +362,7 @@ H5D__layout_set_latest_indexing(H5O_layout_t *layout, const H5S_t *space, if(ndims > 0) { hsize_t max_dims[H5O_LAYOUT_NDIMS]; /* Maximum dimension sizes */ hsize_t cur_dims[H5O_LAYOUT_NDIMS]; /* Current dimension sizes */ - unsigned unlim_count = 0; /* Count of unlimited max. dimensions */ + unsigned unlim_count = 0; /* Count of unlimited max. dimensions */ hbool_t single = TRUE; /* Fulfill single chunk indexing */ unsigned u; /* Local index variable */ @@ -446,7 +446,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__layout_set_latest_indexing() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_oh_create * @@ -589,17 +589,17 @@ done: FUNC_LEAVE_NOAPI_TAG(ret_value) } /* end H5D__layout_oh_create() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_oh_read * - * Purpose: Read layout/pline/efl information for dataset + * Purpose: Read layout/pline/efl information for dataset * - * Return: Success: SUCCEED - * Failure: FAIL + * Return: Success: SUCCEED + * Failure: FAIL * - * Programmer: Quincey Koziol - * Monday, July 27, 2009 + * Programmer: Quincey Koziol + * Monday, July 27, 2009 * *------------------------------------------------------------------------- */ @@ -683,17 +683,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__layout_oh_read() */ - + /*------------------------------------------------------------------------- * Function: H5D__layout_oh_write * - * Purpose: Write layout information for dataset + * Purpose: Write layout information for dataset * - * Return: Success: SUCCEED - * Failure: FAIL + * Return: Success: SUCCEED + * Failure: FAIL * - * Programmer: Quincey Koziol - * Monday, July 27, 2009 + * Programmer: Quincey Koziol + * Monday, July 27, 2009 * *------------------------------------------------------------------------- */ diff --git a/src/H5Dmodule.h b/src/H5Dmodule.h index b259b69..27ccf54 100644 --- a/src/H5Dmodule.h +++ b/src/H5Dmodule.h @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Saturday, September 12, 2015 * * Purpose: This file contains declarations which define macros for the diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c index 492902b..cfed02e 100644 --- a/src/H5Dmpio.c +++ b/src/H5Dmpio.c @@ -3272,7 +3272,7 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk if(H5S_close(dataspace) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTFREE, FAIL, "can't close dataspace") dataspace = NULL; - } /* end if */ + } H5MM_free(chunk_entry->async_info.receive_buffer_array[i]); } /* end for */ diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index c46e38b6..37a27d3 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> + * Programmer: Quincey Koziol * Monday, April 14, 2003 * * Purpose: This file contains declarations which are visible only within diff --git a/src/H5Dselect.c b/src/H5Dselect.c index c5469c2..5a5c491 100644 --- a/src/H5Dselect.c +++ b/src/H5Dselect.c @@ -11,7 +11,7 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -/* Programmer: Quincey Koziol <koziol@ncsa.uiuc.ued> +/* Programmer: Quincey Koziol * Thursday, September 30, 2004 * * Purpose: Dataspace I/O functions. diff --git a/src/H5EAdbg.c b/src/H5EAdbg.c index 49bb447..678b661 100644 --- a/src/H5EAdbg.c +++ b/src/H5EAdbg.c @@ -13,11 +13,11 @@ /*------------------------------------------------------------------------- * - * Created: H5EAdbg.c - * Sep 11 2008 - * Quincey Koziol <koziol@hdfgroup.org> + * Created: H5EAdbg.c + * Sep 11 2008 + * Quincey Koziol * - * Purpose: Dump debugging information about an extensible array. + * Purpose: Dump debugging information about an extensible array. * *------------------------------------------------------------------------- */ @@ -37,9 +37,9 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5EApkg.h" /* Extensible Arrays */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5EApkg.h" /* Extensible Arrays */ /****************/ @@ -79,15 +79,14 @@ /*------------------------------------------------------------------------- - * Function: H5EA__hdr_debug + * Function: H5EA__hdr_debug * - * Purpose: Prints debugging info about a extensible array header. + * Purpose: Prints debugging info about a extensible array header. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Sep 11 2008 + * Programmer: Quincey Koziol + * Sep 11 2008 * *------------------------------------------------------------------------- */ @@ -97,7 +96,7 @@ H5EA__hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, const H5EA_class_t *cls, haddr_t obj_addr)) /* Local variables */ - H5EA_hdr_t *hdr = NULL; /* Shared extensible array header */ + H5EA_hdr_t *hdr = NULL; /* Shared extensible array header */ void *dbg_ctx = NULL; /* Extensible array debugging context */ /* Check arguments */ @@ -117,59 +116,59 @@ H5EA__hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, /* Load the extensible array header */ if(NULL == (hdr = H5EA__hdr_protect(f, addr, dbg_ctx, H5AC__READ_ONLY_FLAG))) - H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") + H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") /* Print opening message */ HDfprintf(stream, "%*sExtensible Array Header...\n", indent, ""); /* Print the values */ HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Array class ID:", hdr->cparam.cls->name); + "Array class ID:", hdr->cparam.cls->name); HDfprintf(stream, "%*s%-*s %zu\n", indent, "", fwidth, - "Header size:", - hdr->size); + "Header size:", + hdr->size); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Raw Element Size:", - (unsigned)hdr->cparam.raw_elmt_size); + "Raw Element Size:", + (unsigned)hdr->cparam.raw_elmt_size); HDfprintf(stream, "%*s%-*s %zu\n", indent, "", fwidth, - "Native Element Size (on this platform):", - hdr->cparam.cls->nat_elmt_size); + "Native Element Size (on this platform):", + hdr->cparam.cls->nat_elmt_size); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Log2(Max. # of elements in array):", - (unsigned)hdr->cparam.max_nelmts_bits); + "Log2(Max. # of elements in array):", + (unsigned)hdr->cparam.max_nelmts_bits); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "# of elements in index block:", - (unsigned)hdr->cparam.idx_blk_elmts); + "# of elements in index block:", + (unsigned)hdr->cparam.idx_blk_elmts); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Min. # of elements per data block:", - (unsigned)hdr->cparam.data_blk_min_elmts); + "Min. # of elements per data block:", + (unsigned)hdr->cparam.data_blk_min_elmts); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Min. # of data block pointers for a super block:", - (unsigned)hdr->cparam.sup_blk_min_data_ptrs); + "Min. # of data block pointers for a super block:", + (unsigned)hdr->cparam.sup_blk_min_data_ptrs); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Log2(Max. # of elements in data block page):", - (unsigned)hdr->cparam.max_dblk_page_nelmts_bits); + "Log2(Max. # of elements in data block page):", + (unsigned)hdr->cparam.max_dblk_page_nelmts_bits); HDfprintf(stream, "%*s%-*s %" PRIuHSIZE "\n", indent, "", fwidth, - "Highest element index stored (+1):", - hdr->stats.stored.max_idx_set); + "Highest element index stored (+1):", + hdr->stats.stored.max_idx_set); HDfprintf(stream, "%*s%-*s %" PRIuHSIZE "\n", indent, "", fwidth, - "Number of super blocks created:", - hdr->stats.stored.nsuper_blks); + "Number of super blocks created:", + hdr->stats.stored.nsuper_blks); HDfprintf(stream, "%*s%-*s %" PRIuHSIZE "\n", indent, "", fwidth, - "Number of data blocks created:", - hdr->stats.stored.ndata_blks); + "Number of data blocks created:", + hdr->stats.stored.ndata_blks); HDfprintf(stream, "%*s%-*s %" PRIuHSIZE "\n", indent, "", fwidth, - "Number of elements 'realized':", - hdr->stats.stored.nelmts); + "Number of elements 'realized':", + hdr->stats.stored.nelmts); HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent, "", fwidth, - "Index Block Address:", - hdr->idx_blk_addr); + "Index Block Address:", + hdr->idx_blk_addr); CATCH if(dbg_ctx && cls->dst_dbg_ctx(dbg_ctx) < 0) H5E_THROW(H5E_CANTRELEASE, "unable to release extensible array debugging context") if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0) - H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") + H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") END_FUNC(PKG) /* end H5EA__hdr_debug() */ @@ -384,21 +383,20 @@ CATCH if(sblock && H5EA__sblock_unprotect(sblock, H5AC__NO_FLAGS_SET) < 0) H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array super block") if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0) - H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") + H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") END_FUNC(PKG) /* end H5EA__sblock_debug() */ /*------------------------------------------------------------------------- - * Function: H5EA__dblock_debug + * Function: H5EA__dblock_debug * - * Purpose: Prints debugging info about a extensible array data block. + * Purpose: Prints debugging info about a extensible array data block. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Sep 22 2008 + * Programmer: Quincey Koziol + * Sep 22 2008 * *------------------------------------------------------------------------- */ @@ -432,7 +430,7 @@ H5EA__dblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, /* Load the extensible array header */ if(NULL == (hdr = H5EA__hdr_protect(f, hdr_addr, dbg_ctx, H5AC__READ_ONLY_FLAG))) - H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") + H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header") /* Protect data block */ /* (Note: setting parent of data block to 'hdr' for this operation should be OK -QAK) */ @@ -444,10 +442,10 @@ H5EA__dblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, /* Print the values */ HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Array class ID:", hdr->cparam.cls->name); + "Array class ID:", hdr->cparam.cls->name); HDfprintf(stream, "%*s%-*s %zu\n", indent, "", fwidth, - "Data Block size:", - dblock->size); + "Data Block size:", + dblock->size); /* Print the elements in the index block */ @@ -466,7 +464,7 @@ CATCH if(dblock && H5EA__dblock_unprotect(dblock, H5AC__NO_FLAGS_SET) < 0) H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array data block") if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0) - H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") + H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header") END_FUNC(PKG) /* end H5EA__dblock_debug() */ diff --git a/src/H5EAmodule.h b/src/H5EAmodule.h index d3e06b7..c3a4c7c 100644 --- a/src/H5EAmodule.h +++ b/src/H5EAmodule.h @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Saturday, September 12, 2015 * * Purpose: This file contains declarations which define macros for the diff --git a/src/H5EApkg.h b/src/H5EApkg.h index bb3f39c..b70231d 100644 --- a/src/H5EApkg.h +++ b/src/H5EApkg.h @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Tuesday, June 17, 2008 * * Purpose: This file contains declarations which are visible only diff --git a/src/H5EAprivate.h b/src/H5EAprivate.h index 1195256..af0ef3a 100644 --- a/src/H5EAprivate.h +++ b/src/H5EAprivate.h @@ -15,7 +15,7 @@ * * Created: H5EAprivate.h * Jun 17 2008 - * Quincey Koziol <koziol@hdfgroup.org> + * Quincey Koziol * * Purpose: Private header for library accessible extensible * array routines. diff --git a/src/H5EAsblock.c b/src/H5EAsblock.c index b4671f8..fb7c458 100644 --- a/src/H5EAsblock.c +++ b/src/H5EAsblock.c @@ -15,7 +15,7 @@ * * Created: H5EAsblock.c * Sep 30 2008 - * Quincey Koziol <koziol@hdfgroup.org> + * Quincey Koziol * * Purpose: Super block routines for extensible arrays. * @@ -98,7 +98,6 @@ H5FL_BLK_DEFINE(page_init); * Return: Non-NULL pointer to super block on success/NULL on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- @@ -179,7 +178,6 @@ END_FUNC(PKG) /* end H5EA__sblock_alloc() */ * Return: Valid file address on success/HADDR_UNDEF on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- @@ -267,7 +265,6 @@ END_FUNC(PKG) /* end H5EA__sblock_create() */ * Return: Non-NULL pointer to data block on success/NULL on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- @@ -328,7 +325,6 @@ END_FUNC(PKG) /* end H5EA__sblock_protect() */ * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- @@ -359,7 +355,6 @@ END_FUNC(PKG) /* end H5EA__sblock_unprotect() */ * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- @@ -408,7 +403,6 @@ END_FUNC(PKG) /* end H5EA__sblock_delete() */ * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 30 2008 * *------------------------------------------------------------------------- diff --git a/src/H5Glink.c b/src/H5Glink.c index 6c42f1d..cbe5307 100644 --- a/src/H5Glink.c +++ b/src/H5Glink.c @@ -15,7 +15,7 @@ * * Created: H5Glink.c * Nov 13 2006 - * Quincey Koziol <koziol@hdfgroup.org> + * Quincey Koziol * * Purpose: Functions for handling links in groups. * @@ -98,7 +98,6 @@ static int H5G_link_cmp_corder_dec(const void *lnk1, const void *lnk2); * (i.e. same as strcmp()) * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Sep 5 2005 * *------------------------------------------------------------------------- @@ -125,7 +124,6 @@ H5G_link_cmp_name_inc(const void *lnk1, const void *lnk2) * (i.e. opposite strcmp()) * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Sep 25 2006 * *------------------------------------------------------------------------- @@ -151,7 +149,6 @@ H5G_link_cmp_name_dec(const void *lnk1, const void *lnk2) * as equal, their order in the sorted array is undefined. * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Nov 6 2006 * *------------------------------------------------------------------------- @@ -186,7 +183,6 @@ H5G_link_cmp_corder_inc(const void *lnk1, const void *lnk2) * as equal, their order in the sorted array is undefined. * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Nov 6 2006 * *------------------------------------------------------------------------- @@ -217,7 +213,6 @@ H5G_link_cmp_corder_dec(const void *lnk1, const void *lnk2) * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Sep 16 2006 * *------------------------------------------------------------------------- @@ -561,7 +556,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Nov 13 2006 * *------------------------------------------------------------------------- diff --git a/src/H5Gloc.c b/src/H5Gloc.c index 4d89abb..0243b41 100644 --- a/src/H5Gloc.c +++ b/src/H5Gloc.c @@ -15,7 +15,7 @@ * * Created: H5Gloc.c * Sep 13 2005 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Quincey Koziol * * Purpose: Functions for working with group "locations" * diff --git a/src/H5Gname.c b/src/H5Gname.c index 4b0f04c..e1004de 100644 --- a/src/H5Gname.c +++ b/src/H5Gname.c @@ -15,7 +15,7 @@ * * Created: H5Gname.c * Sep 12 2005 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Quincey Koziol * * Purpose: Functions for handling group hierarchy paths. * @@ -123,7 +123,6 @@ H5FL_BLK_EXTERN(str_buf); * Failure: Ptr to the null terminator of NAME. * * Programmer: Robb Matzke - * matzke@llnl.gov * Aug 11 1997 * *------------------------------------------------------------------------- @@ -216,7 +215,7 @@ done: * Return: TRUE for valid prefix, FALSE for not a valid prefix, FAIL * on error * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: September 24, 2002 * @@ -281,7 +280,7 @@ done: * * Return: Pointer to reference counted string on success, NULL on error * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: August 19, 2005 * @@ -343,7 +342,7 @@ done: * Return: Success: Non-NULL, combined path * Failure: NULL * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * Tuesday, October 11, 2005 * *------------------------------------------------------------------------- @@ -379,7 +378,7 @@ H5G_build_fullpath_refstr_str(H5RS_str_t *prefix_r, const char *name) * * Return: Pointer to reference counted string on success, NULL on error * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: August 19, 2005 * @@ -448,7 +447,7 @@ H5G__name_init(H5G_name_t *name, const char *path) * Return: Success: Non-negative * Failure: Negative * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * Thursday, August 22, 2002 * *------------------------------------------------------------------------- @@ -552,10 +551,6 @@ H5G_name_copy(H5G_name_t *dst, const H5G_name_t *src, H5_copy_depth_t depth) * Programmer: Quincey Koziol * Tuesday, December 13, 2005 * - * Modifications: Leon Arber - * Oct. 18, 2006 - * Added functionality to get the name for a reference. - * *------------------------------------------------------------------------- */ ssize_t @@ -639,7 +634,7 @@ H5G_name_reset(H5G_name_t *name) * * Return: Success * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * * Date: August 22, 2002 * @@ -777,7 +772,7 @@ done: * * Return: Success: 0, Failure: -1 * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * * Date: June 5, 2002 * @@ -1060,7 +1055,7 @@ done: * * Return: Success: 0, Failure: -1 * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * * Date: June 11, 2002 * diff --git a/src/H5Gnode.c b/src/H5Gnode.c index 9faa0b5..2e7b367 100644 --- a/src/H5Gnode.c +++ b/src/H5Gnode.c @@ -15,7 +15,7 @@ * * Created: H5Gnode.c * Jun 26 1997 - * Robb Matzke <matzke@llnl.gov> + * Robb Matzke * * Purpose: Functions for handling symbol table nodes. A * symbol table node is a small collection of symbol @@ -145,8 +145,6 @@ H5FL_SEQ_DEFINE(H5G_entry_t); * Programmer: Robb Matzke * Wednesday, October 8, 1997 * - * Modifications: - * *------------------------------------------------------------------------- */ static H5UC_t * @@ -169,7 +167,6 @@ H5G_node_get_shared(const H5F_t *f, const void H5_ATTR_UNUSED *_udata) * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke - * matzke@llnl.gov * Jul 8 1997 * *------------------------------------------------------------------------- @@ -199,7 +196,6 @@ H5G_node_decode_key(const H5B_shared_t *shared, const uint8_t *raw, void *_key) * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke - * matzke@llnl.gov * Jul 8 1997 * *------------------------------------------------------------------------- @@ -270,7 +266,6 @@ H5G_node_debug_key(FILE *stream, int indent, int fwidth, const void *_key, * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Jan 15 2003 * *------------------------------------------------------------------------- @@ -310,7 +305,6 @@ H5G__node_free(H5G_node_t *sym) * Failure: Negative * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 23 1997 * *------------------------------------------------------------------------- @@ -382,11 +376,8 @@ done: * Failure: FAIL (same as LT_KEY<RT_KEY) * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 23 1997 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t @@ -439,11 +430,8 @@ done: * Failure: FAIL (same as UDATA < LT_KEY) * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 23 1997 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t @@ -501,7 +489,6 @@ done: * Failure: Negative if not found. * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 23 1997 * *------------------------------------------------------------------------- @@ -591,7 +578,6 @@ done: * Failure: H5B_INS_ERROR, NEW_NODE_P might not be initialized. * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 24 1997 * *------------------------------------------------------------------------- @@ -951,7 +937,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke - * matzke@llnl.gov * Jun 24 1997 * *------------------------------------------------------------------------- @@ -1368,7 +1353,6 @@ done: * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@hdfgroup.org * Nov 19 2006 * *------------------------------------------------------------------------- @@ -1475,7 +1459,6 @@ H5G__node_iterate_size(H5F_t *f, const void H5_ATTR_UNUSED *_lt_key, * Return: 0(zero) on success/Negative on failure * * Programmer: Robb Matzke - * matzke@llnl.gov * Aug 4 1997 * *------------------------------------------------------------------------- diff --git a/src/H5HLmodule.h b/src/H5HLmodule.h index b0fd750..712c7c1 100644 --- a/src/H5HLmodule.h +++ b/src/H5HLmodule.h @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Saturday, September 12, 2015 * * Purpose: This file contains declarations which define macros for the diff --git a/src/H5HLpkg.h b/src/H5HLpkg.h index 44a2cfb..9891e10 100644 --- a/src/H5HLpkg.h +++ b/src/H5HLpkg.h @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Programmer: Quincey Koziol * Wednesday, July 9, 2003 * * Purpose: This file contains declarations which are visible diff --git a/src/H5HLprivate.h b/src/H5HLprivate.h index 7a53b25..60505ee 100644 --- a/src/H5HLprivate.h +++ b/src/H5HLprivate.h @@ -15,7 +15,7 @@ * * Created: H5HLprivate.h * Jul 16 1997 - * Robb Matzke <matzke@llnl.gov> + * Robb Matzke * * Purpose: Private declarations for the H5HL (local heap) package. * diff --git a/src/H5Olink.c b/src/H5Olink.c index f052a53..056208e 100644 --- a/src/H5Olink.c +++ b/src/H5Olink.c @@ -119,11 +119,12 @@ H5FL_DEFINE_STATIC(H5O_link_t); static void * H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, - size_t H5_ATTR_UNUSED p_size, const uint8_t *p) + size_t p_size, const uint8_t *p) { H5O_link_t *lnk = NULL; /* Pointer to link message */ size_t len = 0; /* Length of a string in the message */ unsigned char link_flags; /* Flags for encoding link info */ + const uint8_t *p_end = p + p_size; /* End of the p buffer */ void *ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC @@ -199,6 +200,11 @@ H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, if(len == 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "invalid name length") + /* Make sure that length doesn't exceed buffer size, which could occur + when the file is corrupted */ + if(p + len > p_end) + HGOTO_ERROR(H5E_OHDR, H5E_OVERFLOW, NULL, "name length causes read past end of buffer") + /* Get the link's name */ if(NULL == (lnk->name = (char *)H5MM_malloc(len + 1))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") @@ -218,6 +224,12 @@ H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, UINT16DECODE(p, len) if(len == 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "invalid link length") + + /* Make sure that length doesn't exceed buffer size, which could occur + when the file is corrupted */ + if(p + len > p_end) + HGOTO_ERROR(H5E_OHDR, H5E_OVERFLOW, NULL, "name length causes read past end of buffer") + if(NULL == (lnk->u.soft.name = (char *)H5MM_malloc((size_t)len + 1))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") H5MM_memcpy(lnk->u.soft.name, p, len); @@ -238,6 +250,11 @@ H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, lnk->u.ud.size = len; if(len > 0) { + /* Make sure that length doesn't exceed buffer size, which could + occur when the file is corrupted */ + if(p + len > p_end) + HGOTO_ERROR(H5E_OHDR, H5E_OVERFLOW, NULL, "name length causes read past end of buffer") + if(NULL == (lnk->u.ud.udata = H5MM_malloc((size_t)len))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") H5MM_memcpy(lnk->u.ud.udata, p, len); diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c index 7e49c4b..064a9b8 100644 --- a/src/H5Pdcpl.c +++ b/src/H5Pdcpl.c @@ -246,7 +246,7 @@ static hbool_t H5P_dcrt_def_layout_init_g = FALSE; static herr_t H5P__dcrt_reg_prop(H5P_genclass_t *pclass) { - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -421,13 +421,13 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size) for(u = 0; u < layout->storage.u.virt.list_nused; u++) { /* Source file name */ tmp_size = HDstrlen(layout->storage.u.virt.list[u].source_file_name) + (size_t)1; - (void)H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_file_name, tmp_size); + H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_file_name, tmp_size); *pp += tmp_size; *size += tmp_size; /* Source dataset name */ tmp_size = HDstrlen(layout->storage.u.virt.list[u].source_dset_name) + (size_t)1; - (void)H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_dset_name, tmp_size); + H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_dset_name, tmp_size); *pp += tmp_size; *size += tmp_size; @@ -597,14 +597,14 @@ H5P__dcrt_layout_dec(const void **_pp, void *value) tmp_size = HDstrlen((const char *)*pp) + 1; if(NULL == (tmp_layout.storage.u.virt.list[u].source_file_name = (char *)H5MM_malloc(tmp_size))) HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "unable to allocate memory for source file name") - (void)H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_file_name, *pp, tmp_size); + H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_file_name, *pp, tmp_size); *pp += tmp_size; /* Source dataset name */ tmp_size = HDstrlen((const char *)*pp) + 1; if(NULL == (tmp_layout.storage.u.virt.list[u].source_dset_name = (char *)H5MM_malloc(tmp_size))) HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "unable to allocate memory for source dataset name") - (void)H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_dset_name, *pp, tmp_size); + H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_dset_name, *pp, tmp_size); *pp += tmp_size; /* Source selection */ @@ -2375,7 +2375,7 @@ H5Pget_virtual_vspace(hid_t dcpl_id, size_t idx) /* Get the virtual space */ if(idx >= layout.storage.u.virt.list_nused) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)") HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc); if(NULL == (space = H5S_copy(layout.storage.u.virt.list[idx].source_dset.virtual_select, FALSE, TRUE))) HGOTO_ERROR(H5E_PLIST, H5E_CANTCOPY, FAIL, "unable to copy virtual selection") @@ -2431,9 +2431,9 @@ H5Pget_virtual_srcspace(hid_t dcpl_id, size_t idx) if(H5D_VIRTUAL != layout.type) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a virtual storage layout") - /* Check idx */ + /* Check index */ if(idx >= layout.storage.u.virt.list_nused) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)") HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc); /* Attempt to open source dataset and patch extent if extent status is not @@ -2537,7 +2537,7 @@ H5Pget_virtual_filename(hid_t dcpl_id, size_t idx, char *name/*out*/, /* Get the virtual filename */ if(idx >= layout.storage.u.virt.list_nused) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)") HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc); HDassert(layout.storage.u.virt.list[idx].source_file_name); if(name && (size > 0)) @@ -2600,7 +2600,7 @@ H5Pget_virtual_dsetname(hid_t dcpl_id, size_t idx, char *name/*out*/, /* Get the virtual filename */ if(idx >= layout.storage.u.virt.list_nused) - HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)") + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)") HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc); HDassert(layout.storage.u.virt.list[idx].source_dset_name); if(name && (size > 0)) diff --git a/src/H5Rint.c b/src/H5Rint.c index 30f3dbb..6dfbf2b 100644 --- a/src/H5Rint.c +++ b/src/H5Rint.c @@ -423,6 +423,10 @@ H5R__destroy(H5R_ref_priv_t *ref) HDassert(ref != NULL); + H5R_LOG_DEBUG("Destroying reference, filename=%s, obj_addr=%s, encode size=%u", + ref->info.obj.filename, H5R__print_token(ref->info.obj.token), + ref->encode_size); + H5MM_xfree(ref->info.obj.filename); ref->info.obj.filename = NULL; @@ -1028,6 +1032,10 @@ H5R__encode(const char *filename, const H5R_ref_priv_t *ref, unsigned char *buf, HGOTO_ERROR(H5E_REFERENCE, H5E_UNSUPPORTED, FAIL, "internal error (unknown reference type)") } /* end switch */ + H5R_LOG_DEBUG("Encoded reference, filename=%s, obj_addr=%s, encode size=%u", + ref->info.obj.filename, H5R__print_token(ref->info.obj.token), + encode_size); + *nalloc = encode_size; done: @@ -88,18 +88,18 @@ H5FL_ARR_DEFINE(hsize_t, H5S_MAX_RANK); /* Dataspace ID class */ static const H5I_class_t H5I_DATASPACE_CLS[1] = {{ - H5I_DATASPACE, /* ID class value */ - 0, /* Class flags */ - 2, /* # of reserved IDs for class */ - (H5I_free_t)H5S_close /* Callback routine for closing objects of this class */ + H5I_DATASPACE, /* ID class value */ + 0, /* Class flags */ + 2, /* # of reserved IDs for class */ + (H5I_free_t)H5S_close /* Callback routine for closing objects of this class */ }}; /* Dataspace selection iterator ID class */ static const H5I_class_t H5I_SPACE_SEL_ITER_CLS[1] = {{ - H5I_SPACE_SEL_ITER, /* ID class value */ - 0, /* Class flags */ - 0, /* # of reserved IDs for class */ - (H5I_free_t)H5S_sel_iter_close /* Callback routine for closing objects of this class */ + H5I_SPACE_SEL_ITER, /* ID class value */ + 0, /* Class flags */ + 0, /* # of reserved IDs for class */ + (H5I_free_t)H5S_sel_iter_close /* Callback routine for closing objects of this class */ }}; @@ -107,7 +107,7 @@ static const H5I_class_t H5I_SPACE_SEL_ITER_CLS[1] = {{ static hbool_t H5S_top_package_initialize_s = FALSE; - + /*-------------------------------------------------------------------------- NAME H5S__init_package -- Initialize interface-specific information @@ -127,11 +127,11 @@ H5S__init_package(void) /* Initialize the atom group for the dataspace IDs */ if(H5I_register_type(H5I_DATASPACE_CLS) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace ID class") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace ID class") /* Initialize the atom group for the dataspace selction iterator IDs */ if(H5I_register_type(H5I_SPACE_SEL_ITER_CLS) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace selection iterator ID class") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace selection iterator ID class") /* Mark "top" of interface as initialized, too */ H5S_top_package_initialize_s = TRUE; @@ -140,7 +140,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__init_package() */ - + /*-------------------------------------------------------------------------- NAME H5S_top_term_package @@ -162,22 +162,22 @@ done: int H5S_top_term_package(void) { - int n = 0; + int n = 0; FUNC_ENTER_NOAPI_NOINIT_NOERR if(H5S_top_package_initialize_s) { - if(H5I_nmembers(H5I_DATASPACE) > 0) { - (void)H5I_clear_type(H5I_DATASPACE, FALSE, FALSE); + if(H5I_nmembers(H5I_DATASPACE) > 0) { + (void)H5I_clear_type(H5I_DATASPACE, FALSE, FALSE); n++; /*H5I*/ - } /* end if */ + } /* end if */ - if(H5I_nmembers(H5I_SPACE_SEL_ITER) > 0) { - (void)H5I_clear_type(H5I_SPACE_SEL_ITER, FALSE, FALSE); + if(H5I_nmembers(H5I_SPACE_SEL_ITER) > 0) { + (void)H5I_clear_type(H5I_SPACE_SEL_ITER, FALSE, FALSE); n++; /*H5I*/ - } /* end if */ + } /* end if */ - /* Mark "top" of interface as closed */ + /* Mark "top" of interface as closed */ if(0 == n) H5S_top_package_initialize_s = FALSE; } /* end if */ @@ -185,7 +185,7 @@ H5S_top_term_package(void) FUNC_LEAVE_NOAPI(n) } /* end H5S_top_term_package() */ - + /*-------------------------------------------------------------------------- NAME H5S_term_package @@ -209,7 +209,7 @@ H5S_top_term_package(void) int H5S_term_package(void) { - int n = 0; + int n = 0; FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -225,7 +225,7 @@ H5S_term_package(void) /* Destroy the dataspace selection iterator object id group */ n += (H5I_dec_type_ref(H5I_SPACE_SEL_ITER) > 0); - /* Mark interface as closed */ + /* Mark interface as closed */ if(0 == n) H5_PKG_INIT_VAR = FALSE; } /* end if */ @@ -234,7 +234,7 @@ H5S_term_package(void) } /* end H5S_term_package() */ - + /*-------------------------------------------------------------------------- NAME H5S_get_validiated_dataspace @@ -278,13 +278,13 @@ H5S_get_validated_dataspace(hid_t space_id, const H5S_t **space) /* Check for valid selection */ if(H5S_SELECT_VALID(*space) != TRUE) HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "selection + offset not within extent") - } /* end else */ + } done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_validated_dataspace() */ - + /*-------------------------------------------------------------------------- NAME H5S_create @@ -362,7 +362,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_create() */ - + /*-------------------------------------------------------------------------- NAME H5Screate @@ -409,16 +409,16 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Screate() */ - + /*------------------------------------------------------------------------- * Function: H5S__extent_release * - * Purpose: Releases all memory associated with a dataspace extent. + * Purpose: Releases all memory associated with a dataspace extent. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Thursday, July 23, 1998 + * Programmer: Quincey Koziol + * Thursday, July 23, 1998 * *------------------------------------------------------------------------- */ @@ -437,19 +437,22 @@ H5S__extent_release(H5S_extent_t *extent) extent->max = H5FL_ARR_FREE(hsize_t, extent->max); } /* end if */ + extent->rank = 0; + extent->nelem = 0; + FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__extent_release() */ - + /*------------------------------------------------------------------------- * Function: H5S_close * - * Purpose: Releases all memory associated with a dataspace. + * Purpose: Releases all memory associated with a dataspace. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ @@ -481,16 +484,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_close() */ - + /*------------------------------------------------------------------------- * Function: H5Sclose * - * Purpose: Release access to a dataspace object. + * Purpose: Release access to a dataspace object. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ @@ -514,69 +517,70 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sclose() */ - + /*------------------------------------------------------------------------- * Function: H5Scopy * - * Purpose: Copies a dataspace. + * Purpose: Copies a dataspace. + * + * Return: Success: ID of the new dataspace * - * Return: Success: ID of the new dataspace - * Failure: Negative + * Failure: H5I_INVALID_HID * - * Programmer: Robb Matzke - * Friday, January 30, 1998 + * Programmer: Robb Matzke + * Friday, January 30, 1998 * *------------------------------------------------------------------------- */ hid_t H5Scopy(hid_t space_id) { - H5S_t *src; - H5S_t *dst = NULL; - hid_t ret_value; + H5S_t *src = NULL; + H5S_t *dst = NULL; + hid_t ret_value = H5I_INVALID_HID; - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API(H5I_INVALID_HID) H5TRACE1("i", "i", space_id); /* Check args */ if(NULL == (src = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a dataspace") /* Copy */ if(NULL == (dst = H5S_copy(src, FALSE, TRUE))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to copy dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, H5I_INVALID_HID, "unable to copy dataspace") /* Atomize */ if((ret_value = H5I_register (H5I_DATASPACE, dst, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace atom") + HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataspace atom") done: if(ret_value < 0) if(dst && H5S_close(dst) < 0) - HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace") + HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, H5I_INVALID_HID, "unable to release dataspace") FUNC_LEAVE_API(ret_value) } /* end H5Scopy() */ - + /*------------------------------------------------------------------------- * Function: H5Sextent_copy * - * Purpose: Copies a dataspace extent. + * Purpose: Copies a dataspace extent. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Thursday, July 23, 1998 + * Programmer: Quincey Koziol + * Thursday, July 23, 1998 * *------------------------------------------------------------------------- */ herr_t H5Sextent_copy(hid_t dst_id,hid_t src_id) { - H5S_t *src; - H5S_t *dst; - herr_t ret_value = SUCCEED; + H5S_t *src; + H5S_t *dst; + herr_t ret_value = SUCCEED; FUNC_ENTER_API(FAIL) H5TRACE2("e", "ii", dst_id, src_id); @@ -595,7 +599,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sextent_copy() */ - + /*------------------------------------------------------------------------- * Function: H5S_extent_copy * @@ -632,16 +636,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_extent_copy() */ - + /*------------------------------------------------------------------------- * Function: H5S__extent_copy_real * - * Purpose: Copies a dataspace extent + * Purpose: Copies a dataspace extent * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Wednesday, June 3, 1998 + * Programmer: Quincey Koziol + * Wednesday, June 3, 1998 * *------------------------------------------------------------------------- */ @@ -701,29 +705,30 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__extent_copy_real() */ - + /*------------------------------------------------------------------------- * Function: H5S_copy * - * Purpose: Copies a dataspace, by copying the extent and selection through - * H5S_extent_copy and H5S_select_copy. If the SHARE_SELECTION flag - * is set, then the selection can be shared between the source and - * destination dataspaces. (This should only occur in situations - * where the destination dataspace will immediately change to a new - * selection) + * Purpose: Copies a dataspace, by copying the extent and selection through + * H5S_extent_copy and H5S_select_copy. If the SHARE_SELECTION flag + * is set, then the selection can be shared between the source and + * destination dataspaces. (This should only occur in situations + * where the destination dataspace will immediately change to a new + * selection) + * + * Return: Success: A pointer to a new copy of SRC * - * Return: Success: A pointer to a new copy of SRC - * Failure: NULL + * Failure: NULL * - * Programmer: Robb Matzke - * Thursday, December 4, 1997 + * Programmer: Robb Matzke + * Thursday, December 4, 1997 * *------------------------------------------------------------------------- */ H5S_t * H5S_copy(const H5S_t *src, hbool_t share_selection, hbool_t copy_max) { - H5S_t *dst = NULL; + H5S_t *dst = NULL; H5S_t *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -750,17 +755,18 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_copy() */ - + /*------------------------------------------------------------------------- * Function: H5S_get_simple_extent_npoints * - * Purpose: Determines how many data points a dataset extent has. + * Purpose: Determines how many data points a dataset extent has. * - * Return: Success: Number of data points in the dataset extent. - * Failure: negative + * Return: Success: Number of data points in the dataset extent. * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Failure: Negative + * + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * * Note: This routine participates in the "Inlining C function pointers" * pattern, don't call it directly, use the appropriate macro @@ -785,17 +791,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_simple_extent_npoints() */ - + /*------------------------------------------------------------------------- * Function: H5Sget_simple_extent_npoints * - * Purpose: Determines how many data points a dataset extent has. + * Purpose: Determines how many data points a dataset extent has. * - * Return: Success: Number of data points in the dataset. - * Failure: negative + * Return: Success: Number of data points in the dataset. + * Failure: Negative * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ @@ -803,7 +809,7 @@ hssize_t H5Sget_simple_extent_npoints(hid_t space_id) { H5S_t *ds; - hssize_t ret_value; + hssize_t ret_value; FUNC_ENTER_API(FAIL) H5TRACE1("Hs", "i", space_id); @@ -818,22 +824,22 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_simple_extent_npoints() */ - + /*------------------------------------------------------------------------- * Function: H5S_get_npoints_max * - * Purpose: Determines the maximum number of data points a dataspace may - * have. If the `max' array is null then the maximum number of - * data points is the same as the current number of data points - * without regard to the hyperslab. If any element of the `max' - * array is zero then the maximum possible size is returned. + * Purpose: Determines the maximum number of data points a dataspace may + * have. If the `max' array is null then the maximum number of + * data points is the same as the current number of data points + * without regard to the hyperslab. If any element of the `max' + * array is zero then the maximum possible size is returned. * - * Return: Success: Maximum number of data points the dataspace - * may have. - * Failure: 0 + * Return: Success: Maximum number of data points the dataspace + * may have. + * Failure: 0 * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ @@ -841,7 +847,7 @@ hsize_t H5S_get_npoints_max(const H5S_t *ds) { unsigned u; - hsize_t ret_value = 0; /* Return value */ + hsize_t ret_value = 0; /* Return value */ FUNC_ENTER_NOAPI(0) @@ -863,11 +869,11 @@ H5S_get_npoints_max(const H5S_t *ds) if(H5S_UNLIMITED == ds->extent.max[u]) { ret_value = HSIZET_MAX; break; - } /* end if */ + } else ret_value *= ds->extent.max[u]; - } /* end for */ - } /* end if */ + } + } else for(ret_value = 1, u = 0; u < ds->extent.rank; u++) ret_value *= ds->extent.size[u]; @@ -877,38 +883,38 @@ H5S_get_npoints_max(const H5S_t *ds) default: HDassert("unknown dataspace class" && 0); HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, 0, "internal error (unknown dataspace class)") - } /* end switch */ + } done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_npoints_max() */ - + /*------------------------------------------------------------------------- * Function: H5Sget_simple_extent_ndims * - * Purpose: Determines the dimensionality of a dataspace. + * Purpose: Determines the dimensionality of a dataspace. * - * Return: Success: The number of dimensions in a dataspace. - * Failure: Negative + * Return: Success: The number of dimensions in a dataspace. + * Failure: Negative * - * Programmer: Robb Matzke - * Thursday, December 11, 1997 + * Programmer: Robb Matzke + * Thursday, December 11, 1997 * *------------------------------------------------------------------------- */ int H5Sget_simple_extent_ndims(hid_t space_id) { - H5S_t *ds; - int ret_value; /* Return value */ + H5S_t *ds; + int ret_value = -1; - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE1("Is", "i", space_id); /* Check args */ if(NULL == (ds = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, (-1), "not a dataspace") ret_value = (int)H5S_GET_EXTENT_NDIMS(ds); @@ -916,18 +922,19 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_simple_extent_ndims() */ - + /*------------------------------------------------------------------------- * Function: H5S_get_simple_extent_ndims * - * Purpose: Returns the number of dimensions in a dataspace. + * Purpose: Returns the number of dimensions in a dataspace. + * + * Return: Success: Non-negative number of dimensions. + * Zero implies a scalar. * - * Return: Success: Non-negative number of dimensions. Zero - * implies a scalar. - * Failure: Negative + * Failure: Negative * - * Programmer: Robb Matzke - * Thursday, December 11, 1997 + * Programmer: Robb Matzke + * hursday, December 11, 1997 * * Note: This routine participates in the "Inlining C function pointers" * pattern, don't call it directly, use the appropriate macro @@ -938,7 +945,7 @@ done: int H5S_get_simple_extent_ndims(const H5S_t *ds) { - int ret_value = -1; /* Return value */ + int ret_value = -1; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -962,35 +969,35 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_simple_extent_ndims() */ - + /*------------------------------------------------------------------------- * Function: H5Sget_simple_extent_dims * - * Purpose: Returns the size and maximum sizes in each dimension of - * a dataspace DS through the DIMS and MAXDIMS arguments. + * Purpose: Returns the size and maximum sizes in each dimension of + * a dataspace DS through the DIMS and MAXDIMS arguments. * - * Return: Success: Number of dimensions, the same value as - * returned by H5Sget_simple_extent_ndims(). - * Failure: Negative + * Return: Success: Number of dimensions, the same value as + * returned by H5Sget_simple_extent_ndims(). * - * Programmer: Robb Matzke - * Thursday, December 11, 1997 + * Failure: Negative + * + * Programmer: Robb Matzke + * Thursday, December 11, 1997 * *------------------------------------------------------------------------- */ int -H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[]/*out*/, - hsize_t maxdims[]/*out*/) +H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[]/*out*/, hsize_t maxdims[]/*out*/) { - H5S_t *ds; - int ret_value; /* Return value */ + H5S_t *ds; + int ret_value = -1; - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API((-1)) H5TRACE3("Is", "ixx", space_id, dims, maxdims); /* Check args */ if(NULL == (ds = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, (-1), "not a dataspace") ret_value = H5S_get_simple_extent_dims(ds, dims, maxdims); @@ -998,26 +1005,26 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_simple_extent_dims() */ - + /*------------------------------------------------------------------------- * Function: H5S_extent_get_dims * - * Purpose: Returns the size in each dimension of a dataspace. This - * function may not be meaningful for all types of dataspaces. + * Purpose: Returns the size in each dimension of a dataspace. This + * function may not be meaningful for all types of dataspaces. * - * Return: Success: Number of dimensions. Zero implies scalar. - * Failure: Negative + * Return: Success: Number of dimensions. Zero implies scalar. + * Failure: Negative * - * Programmer: Quincey Koziol - * Tuesday, June 30, 2009 + * Programmer: Quincey Koziol + * Tuesday, June 30, 2009 * *------------------------------------------------------------------------- */ int H5S_extent_get_dims(const H5S_extent_t *ext, hsize_t dims[], hsize_t max_dims[]) { - int i; /* Local index variable */ - int ret_value = -1; /* Return value */ + int i; /* Local index variable */ + int ret_value = -1; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -1054,25 +1061,25 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_extent_get_dims() */ - + /*------------------------------------------------------------------------- * Function: H5S_get_simple_extent_dims * - * Purpose: Returns the size in each dimension of a dataspace. This - * function may not be meaningful for all types of dataspaces. + * Purpose: Returns the size in each dimension of a dataspace. This + * function may not be meaningful for all types of dataspaces. * - * Return: Success: Number of dimensions. Zero implies scalar. - * Failure: Negative + * Return: Success: Number of dimensions. Zero implies scalar. + * Failure: Negative * - * Programmer: Robb Matzke - * Thursday, December 11, 1997 + * Programmer: Robb Matzke + * Thursday, December 11, 1997 * *------------------------------------------------------------------------- */ int H5S_get_simple_extent_dims(const H5S_t *ds, hsize_t dims[], hsize_t max_dims[]) { - int ret_value = -1; /* Return value */ + int ret_value = -1; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -1087,17 +1094,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_simple_extent_dims() */ - + /*------------------------------------------------------------------------- * Function: H5S_write * - * Purpose: Updates a dataspace by writing a message to an object - * header. + * Purpose: Updates a dataspace by writing a message to an object + * header. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ @@ -1121,17 +1128,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_write() */ - + /*------------------------------------------------------------------------- * Function: H5S_append * - * Purpose: Updates a dataspace by adding a message to an object - * header. + * Purpose: Updates a dataspace by adding a message to an object header. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Tuesday, December 31, 2002 + * Programmer: Quincey Koziol + * Tuesday, December 31, 2002 * *------------------------------------------------------------------------- */ @@ -1155,24 +1161,25 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_append() */ - + /*------------------------------------------------------------------------- * Function: H5S_read * - * Purpose: Reads the dataspace from an object header. + * Purpose: Reads the dataspace from an object header. + * + * Return: Success: Pointer to a new dataspace. * - * Return: Success: Pointer to a new dataspace. - * Failure: NULL + * Failure: NULL * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ H5S_t * H5S_read(const H5O_loc_t *loc) { - H5S_t *ds = NULL; /* Dataspace to return */ + H5S_t *ds = NULL; /* Dataspace to return */ H5S_t *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -1201,7 +1208,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_read() */ - + /*-------------------------------------------------------------------------- NAME H5S__is_simple @@ -1233,7 +1240,7 @@ H5S__is_simple(const H5S_t *sdim) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__is_simple() */ - + /*-------------------------------------------------------------------------- NAME H5Sis_simple @@ -1241,7 +1248,7 @@ H5S__is_simple(const H5S_t *sdim) Check if a dataspace is simple USAGE htri_t H5Sis_simple(space_id) - hid_t space_id; IN: ID of dataspace object to query + hid_t space_id; IN: ID of dataspace object to query RETURNS TRUE/FALSE/FAIL DESCRIPTION @@ -1251,15 +1258,15 @@ H5S__is_simple(const H5S_t *sdim) htri_t H5Sis_simple(hid_t space_id) { - H5S_t *space; /* Dataspace to check */ - htri_t ret_value; /* Return value */ + H5S_t *space; /* Dataspace to check */ + htri_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("t", "i", space_id); /* Check args and all the boring stuff. */ if(NULL == (space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "not a dataspace") ret_value = H5S__is_simple(space); @@ -1267,7 +1274,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sis_simple() */ - + /*-------------------------------------------------------------------------- NAME H5Sset_extent_simple @@ -1275,11 +1282,11 @@ done: Sets the size of a simple dataspace USAGE herr_t H5Sset_extent_simple(space_id, rank, dims, max) - hid_t space_id; IN: Dataspace object to query - int rank; IN: # of dimensions for the dataspace - const size_t *dims; IN: Size of each dimension for the dataspace - const size_t *max; IN: Maximum size of each dimension for the - dataspace + hid_t space_id; IN: Dataspace object to query + int rank; IN: # of dimensions for the dataspace + const size_t *dims; IN: Size of each dimension for the dataspace + const size_t *max; IN: Maximum size of each dimension for the + dataspace RETURNS Non-negative on success/Negative on failure DESCRIPTION @@ -1298,8 +1305,8 @@ herr_t H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[/*rank*/], const hsize_t max[/*rank*/]) { - H5S_t *space; /* Dataspace to modify */ - int u; /* Local counting variable */ + H5S_t *space; /* Dataspace to modify */ + int u; /* Local counting variable */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -1322,26 +1329,25 @@ H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[/*rank*/], for(u = 0; u < rank; u++) if(max[u] != H5S_UNLIMITED && max[u] < dims[u]) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid maximum dimension size") - } /* end if */ + } /* Do it */ if(H5S_set_extent_simple(space, (unsigned)rank, dims, max) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to set simple extent") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to set simple extent") done: FUNC_LEAVE_API(ret_value) } /* end H5Sset_extent_simple() */ - + /*------------------------------------------------------------------------- * Function: H5S_set_extent_simple * - * Purpose: This is where the real work happens for - * H5Sset_extent_simple(). + * Purpose: This is where the real work happens for H5Sset_extent_simple(). * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, July 8, 1998 * *------------------------------------------------------------------------- @@ -1362,10 +1368,10 @@ H5S_set_extent_simple(H5S_t *space, unsigned rank, const hsize_t *dims, if(H5S__extent_release(&space->extent) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "failed to release previous dataspace extent") - if(rank == 0) { /* scalar variable */ + if(rank == 0) { /* scalar variable */ space->extent.type = H5S_SCALAR; space->extent.nelem = 1; - space->extent.rank = 0; /* set to scalar rank */ + space->extent.rank = 0; /* set to scalar rank */ } /* end if */ else { hsize_t nelem; /* Number of elements in extent */ @@ -1408,91 +1414,90 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_set_extent_simple() */ - + /*------------------------------------------------------------------------- * Function: H5Screate_simple * - * Purpose: Creates a new simple dataspace object and opens it for - * access. The DIMS argument is the size of the simple dataset - * and the MAXDIMS argument is the upper limit on the size of - * the dataset. MAXDIMS may be the null pointer in which case - * the upper limit is the same as DIMS. If an element of - * MAXDIMS is H5S_UNLIMITED then the corresponding dimension is - * unlimited, otherwise no element of MAXDIMS should be smaller - * than the corresponding element of DIMS. + * Purpose: Creates a new simple dataspace object and opens it for + * access. The DIMS argument is the size of the simple dataset + * and the MAXDIMS argument is the upper limit on the size of + * the dataset. MAXDIMS may be the null pointer in which case + * the upper limit is the same as DIMS. If an element of + * MAXDIMS is H5S_UNLIMITED then the corresponding dimension is + * unlimited, otherwise no element of MAXDIMS should be smaller + * than the corresponding element of DIMS. + * + * Return: Success: The ID for the new simple dataspace object. * - * Return: Success: The ID for the new simple dataspace object. - * Failure: Negative + * Failure: H5I_INVALID_HID * - * Programmer: Quincey Koziol - * Tuesday, January 27, 1998 + * Programmer: Quincey Koziol + * Tuesday, January 27, 1998 * *------------------------------------------------------------------------- */ hid_t -H5Screate_simple(int rank, const hsize_t dims[/*rank*/], - const hsize_t maxdims[/*rank*/]) +H5Screate_simple(int rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/]) { - H5S_t *space = NULL; - int i; - hid_t ret_value; /* Return value */ + H5S_t *space = NULL; + int i; + hid_t ret_value = H5I_INVALID_HID; - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API(H5I_INVALID_HID) H5TRACE3("i", "Is*[a0]h*[a0]h", rank, dims, maxdims); /* Check arguments */ if(rank < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dimensionality cannot be negative") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "dimensionality cannot be negative") if(rank > H5S_MAX_RANK) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dimensionality is too large") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "dimensionality is too large") /* We allow users to use this function to create scalar or null dataspace. * Check DIMS isn't set when the RANK is 0. */ if(!dims && rank != 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid dataspace information") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "invalid dataspace information") /* Check whether the current dimensions are valid */ for(i = 0; i < rank; i++) { if(H5S_UNLIMITED == dims[i]) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "current dimension must have a specific size, not H5S_UNLIMITED") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "current dimension must have a specific size, not H5S_UNLIMITED") if(maxdims && H5S_UNLIMITED != maxdims[i] && maxdims[i]<dims[i]) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "maxdims is smaller than dims") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "maxdims is smaller than dims") } /* end for */ /* Create the space and set the extent */ if(NULL == (space = H5S_create_simple((unsigned)rank, dims, maxdims))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create simple dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, H5I_INVALID_HID, "can't create simple dataspace") /* Atomize */ if((ret_value = H5I_register (H5I_DATASPACE, space, TRUE)) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace ID") + HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataspace ID") done: if(ret_value < 0) if(space && H5S_close(space) < 0) - HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace") + HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, H5I_INVALID_HID, "unable to release dataspace") FUNC_LEAVE_API(ret_value) } /* end H5Screate_simple() */ - + /*------------------------------------------------------------------------- * Function: H5S_create_simple * - * Purpose: Internal function to create simple dataspace + * Purpose: Internal function to create simple dataspace * - * Return: Success: The ID for the new simple dataspace object. - * Failure: Negative + * Return: Success: A pointer to a dataspace object + * Failure: NULL * - * Programmer: Quincey Koziol - * Thursday, April 3, 2003 + * Programmer: Quincey Koziol + * Thursday, April 3, 2003 * *------------------------------------------------------------------------- */ H5S_t * -H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/], - const hsize_t maxdims[/*rank*/]) +H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/]) { H5S_t *ret_value = NULL; /* Return value */ @@ -1511,20 +1516,19 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_create_simple() */ - + /*------------------------------------------------------------------------- * Function: H5Sencode2 * - * Purpose: Given a dataspace ID, converts the object description + * Purpose: Given a dataspace ID, converts the object description * (including selection) into binary in a buffer. - * The selection will be encoded according to the file - * format setting in fapl. + * The selection will be encoded according to the file + * format setting in the fapl. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: Raymond Lu - * slu@ncsa.uiuc.edu + * Programmer: Raymond Lu * July 14, 2004 * *------------------------------------------------------------------------- @@ -1540,33 +1544,30 @@ H5Sencode2(hid_t obj_id, void *buf, size_t *nalloc, hid_t fapl_id) /* Check argument and retrieve object */ if(NULL == (dspace = (H5S_t *)H5I_object_verify(obj_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") - /* Verify access property list and set up collective metadata if appropriate */ + /* Verify access property list and set up collective metadata if appropriate */ if(H5CX_set_apl(&fapl_id, H5P_CLS_FACC, H5I_INVALID_HID, TRUE) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, H5I_INVALID_HID, "can't set access property list info") - if(H5S_encode(dspace, (unsigned char **)&buf, nalloc) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTENCODE, FAIL, "can't encode dataspace") done: FUNC_LEAVE_API(ret_value) -} /* H5Sencode2() */ - +} /* end H5Sencode2() */ + /*------------------------------------------------------------------------- * Function: H5S_encode * - * Purpose: Private function for H5Sencode. Converts an object + * Purpose: Private function for H5Sencode. Converts an object * description for dataspace and its selection into binary * in a buffer. * - * Return: Success: non-negative - * Failure: negative + * Return: SUCCEED/FAIL * - * Programmer: Raymond Lu - * slu@ncsa.uiuc.edu + * Programmer: Raymond Lu * July 14, 2004 * *------------------------------------------------------------------------- @@ -1584,15 +1585,15 @@ H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc) /* Allocate "fake" file structure */ if(NULL == (f = H5F_fake_alloc((uint8_t)0))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate fake file struct") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate fake file struct") /* Find out the size of buffer needed for extent */ if((extent_size = H5O_msg_raw_size(f, H5O_SDSPACE_ID, TRUE, obj)) == 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace size") + HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace size") /* Find out the size of buffer needed for selection */ if((sselect_size = H5S_SELECT_SERIAL_SIZE(obj)) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace selection size") + HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace selection size") H5_CHECKED_ASSIGN(select_size, size_t, sselect_size, hssize_t); /* Verify the size of buffer. If it's not big enough, simply return the @@ -1633,18 +1634,18 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_encode() */ - + /*------------------------------------------------------------------------- * Function: H5Sdecode * - * Purpose: Decode a binary object description of dataspace and + * Purpose: Decode a binary object description of dataspace and * return a new object handle. * - * Return: Success: dataspace ID(non-negative) - * Failure: negative + * Return: Success: dataspace ID(non-negative) + * + * Failure: H5I_INVALID_HID * - * Programmer: Raymond Lu - * slu@ncsa.uiuc.edu + * Programmer: Raymond Lu * July 14, 2004 * *------------------------------------------------------------------------- @@ -1655,35 +1656,35 @@ H5Sdecode(const void *buf) H5S_t *ds; hid_t ret_value; - FUNC_ENTER_API(FAIL) + FUNC_ENTER_API(H5I_INVALID_HID) H5TRACE1("i", "*x", buf); if(buf == NULL) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "empty buffer") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "empty buffer") if((ds = H5S_decode((const unsigned char **)&buf)) == NULL) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, FAIL, "can't decode object") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, H5I_INVALID_HID, "can't decode object") /* Register the type and return the ID */ if((ret_value = H5I_register(H5I_DATASPACE, ds, TRUE)) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTREGISTER, FAIL, "unable to register dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataspace") done: FUNC_LEAVE_API(ret_value) } /* end H5Sdecode() */ - + /*------------------------------------------------------------------------- * Function: H5S_decode * - * Purpose: Private function for H5Sdecode. Reconstructs a binary + * Purpose: Private function for H5Sdecode. Reconstructs a binary * description of dataspace and returns a new object handle. * - * Return: Success: dataspace ID(non-negative) - * Failure: negative + * Return: Success: Pointer to a dataspace buffer + * + * Failure: NULL * - * Programmer: Raymond Lu - * slu@ncsa.uiuc.edu + * Programmer: Raymond Lu * July 14, 2004 * *------------------------------------------------------------------------- @@ -1703,18 +1704,18 @@ H5S_decode(const unsigned char **p) /* Decode the type of the information */ if(*pp++ != H5O_SDSPACE_ID) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADMESG, NULL, "not an encoded dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_BADMESG, NULL, "not an encoded dataspace") /* Decode the version of the dataspace information */ if(*pp++ != H5S_ENCODE_VERSION) - HGOTO_ERROR(H5E_DATASPACE, H5E_VERSION, NULL, "unknown version of encoded dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_VERSION, NULL, "unknown version of encoded dataspace") /* Decode the "size of size" information */ sizeof_size = *pp++; /* Allocate "fake" file structure */ if(NULL == (f = H5F_fake_alloc(sizeof_size))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct") /* Decode size of extent information */ UINT32DECODE(pp, extent_size); @@ -1729,7 +1730,7 @@ H5S_decode(const unsigned char **p) if(NULL == (ds = H5FL_CALLOC(H5S_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for dataspace conversion path table") if(NULL == H5O_msg_copy(H5O_SDSPACE_ID, extent, &(ds->extent))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, NULL, "can't copy object") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, NULL, "can't copy object") if(H5S__extent_release(extent) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTDELETE, NULL, "can't release previous dataspace") extent = H5FL_FREE(H5S_extent_t, extent); @@ -1754,17 +1755,18 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_decode() */ - + /*------------------------------------------------------------------------- * Function: H5S_get_simple_extent_type * - * Purpose: Internal function for retrieving the type of extent for a dataspace object + * Purpose: Internal function for retrieving the type of extent for a dataspace object + * + * Return: Success: The class of the dataspace object * - * Return: Success: The class of the dataspace object - * Failure: N5S_NO_CLASS + * Failure: N5S_NO_CLASS * - * Programmer: Quincey Koziol - * Thursday, September 28, 2000 + * Programmer: Quincey Koziol + * Thursday, September 28, 2000 * * Note: This routine participates in the "Inlining C function pointers" * pattern, don't call it directly, use the appropriate macro @@ -1775,7 +1777,7 @@ done: H5S_class_t H5S_get_simple_extent_type(const H5S_t *space) { - H5S_class_t ret_value = H5S_NO_CLASS; /* Return value */ + H5S_class_t ret_value = H5S_NO_CLASS; /* Return value */ FUNC_ENTER_NOAPI(H5S_NO_CLASS) @@ -1787,25 +1789,26 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_get_simple_extent_type() */ - + /*------------------------------------------------------------------------- * Function: H5Sget_simple_extent_type * - * Purpose: Retrieves the type of extent for a dataspace object + * Purpose: Retrieves the type of extent for a dataspace object * - * Return: Success: The class of the dataspace object - * Failure: N5S_NO_CLASS + * Return: Success: The class of the dataspace object * - * Programmer: Quincey Koziol - * Thursday, July 23, 1998 + * Failure: N5S_NO_CLASS + * + * Programmer: Quincey Koziol + * Thursday, July 23, 1998 * *------------------------------------------------------------------------- */ H5S_class_t H5Sget_simple_extent_type(hid_t sid) { - H5S_t *space; - H5S_class_t ret_value; /* Return value */ + H5S_t *space; + H5S_class_t ret_value; /* Return value */ FUNC_ENTER_API(H5S_NO_CLASS) H5TRACE1("Sc", "i", sid); @@ -1820,7 +1823,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_simple_extent_type() */ - + /*-------------------------------------------------------------------------- NAME H5Sset_extent_none @@ -1828,18 +1831,18 @@ done: Resets the extent of a dataspace back to "none" USAGE herr_t H5Sset_extent_none(space_id) - hid_t space_id; IN: Dataspace object to reset + hid_t space_id; IN: Dataspace object to reset RETURNS Non-negative on success/Negative on failure DESCRIPTION - This function resets the type of a dataspace back to "none" with no + This function resets the type of a dataspace to H5S_NULL with no extent information stored for the dataspace. --------------------------------------------------------------------------*/ herr_t H5Sset_extent_none(hid_t space_id) { - H5S_t *space; /* Dataspace to modify */ - herr_t ret_value = SUCCEED; /* Return value */ + H5S_t *space; /* Dataspace to modify */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE1("e", "i", space_id); @@ -1852,22 +1855,21 @@ H5Sset_extent_none(hid_t space_id) if(H5S__extent_release(&space->extent) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTDELETE, FAIL, "can't release previous dataspace") - space->extent.type = H5S_NO_CLASS; + space->extent.type = H5S_NULL; done: FUNC_LEAVE_API(ret_value) } /* end H5Sset_extent_none() */ - + /*------------------------------------------------------------------------- * Function: H5S_set_extent * * Purpose: Modify the dimensions of a dataspace. * - * Return: Success: Non-negative - * Failure: Negative + * Return: TRUE/FALSE/FAIL * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * March 13, 2002 * *------------------------------------------------------------------------- @@ -1905,7 +1907,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_set_extent() */ - + /*------------------------------------------------------------------------- * Function: H5S_has_extent * @@ -1938,7 +1940,7 @@ H5S_has_extent(const H5S_t *ds) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_has_extent() */ - + /*------------------------------------------------------------------------- * Function: H5S_set_extent_real * @@ -1947,7 +1949,7 @@ H5S_has_extent(const H5S_t *ds) * Return: Success: Non-negative * Failure: Negative * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Programmer: Pedro Vicente * March 13, 2002 * *------------------------------------------------------------------------- @@ -1985,25 +1987,27 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_set_extent_real() */ - + /*------------------------------------------------------------------------- * Function: H5Sextent_equal * - * Purpose: Determines if two dataspace extents are equal. + * Purpose: Determines if two dataspace extents are equal. + * + * Return: Success: TRUE if equal, FALSE if unequal * - * Return: Success: TRUE if equal, FALSE if unequal - * Failure: Negative + * Failure: FAIL * - * Programmer: Quincey Koziol - * Monday, October 24, 2005 + * Programmer: Quincey Koziol + * Monday, October 24, 2005 * *------------------------------------------------------------------------- */ htri_t H5Sextent_equal(hid_t space1_id, hid_t space2_id) { - const H5S_t *ds1, *ds2; /* Dataspaces to compare */ - htri_t ret_value; /* Return value */ + const H5S_t *ds1; /* Dataspaces to compare */ + const H5S_t *ds2; + htri_t ret_value; FUNC_ENTER_API(FAIL) H5TRACE2("t", "ii", space1_id, space2_id); @@ -2011,17 +2015,17 @@ H5Sextent_equal(hid_t space1_id, hid_t space2_id) /* check args */ if(NULL == (ds1 = (const H5S_t *)H5I_object_verify(space1_id, H5I_DATASPACE)) || NULL == (ds2 = (const H5S_t *)H5I_object_verify(space2_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace") /* Check dataspaces for extent's equality */ if((ret_value = H5S_extent_equal(ds1, ds2)) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "dataspace comparison failed") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "dataspace comparison failed") done: FUNC_LEAVE_API(ret_value) } /* end H5Sextent_equal() */ - + /*-------------------------------------------------------------------------- NAME H5S_extent_equal @@ -2082,17 +2086,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_extent_equal() */ - + /*------------------------------------------------------------------------- * Function: H5S_extent_nelem * - * Purpose: Determines how many elements a dataset extent describes. + * Purpose: Determines how many elements a dataset extent describes. * - * Return: Success: Number of data points in the dataset extent. - * Failure: negative + * Return: Success: Number of data points in the dataset extent. + * Failure: Negative * - * Programmer: Quincey Koziol - * Thursday, November 30, 2006 + * Programmer: Quincey Koziol + * Thursday, November 30, 2006 * *------------------------------------------------------------------------- */ @@ -2108,7 +2112,7 @@ H5S_extent_nelem(const H5S_extent_t *ext) FUNC_LEAVE_NOAPI(ext->nelem) } /* end H5S_extent_nelem() */ - + /*------------------------------------------------------------------------- * Function: H5S_set_version * diff --git a/src/H5Sall.c b/src/H5Sall.c index 8290ae2..9026e7c 100644 --- a/src/H5Sall.c +++ b/src/H5Sall.c @@ -29,7 +29,7 @@ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ +#include "H5Eprivate.h" /* Error handling */ #include "H5Iprivate.h" /* ID Functions */ #include "H5Spkg.h" /* Dataspace functions */ #include "H5VMprivate.h" /* Vector functions */ @@ -599,7 +599,7 @@ H5S__all_serial_size(const H5S_t H5_ATTR_UNUSED *space) PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_all_serialize(space, p) + herr_t H5S__all_serialize(space, p) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of @@ -627,8 +627,8 @@ H5S__all_serialize(const H5S_t *space, uint8_t **p) HDassert(pp); /* Store the preamble information */ - UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(pp, (uint32_t)H5S_ALL_VERSION_1); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(pp, (uint32_t)H5S_ALL_VERSION_1); /* Store the version number */ UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ UINT32ENCODE(pp, (uint32_t)0); /* Store the additional information length */ diff --git a/src/H5Sdbg.c b/src/H5Sdbg.c index 8171191..32f5295 100644 --- a/src/H5Sdbg.c +++ b/src/H5Sdbg.c @@ -13,11 +13,12 @@ /*------------------------------------------------------------------------- * - * Created: H5Sdbg.c - * Jul 24 2007 - * Quincey Koziol <koziol@hdfgroup.org> + * Created: H5Sdbg.c + * Quincey Koziol + * Jul 24 2007 + * * - * Purpose: Dump debugging information about a dataspace + * Purpose: Dump debugging information about a dataspace * *------------------------------------------------------------------------- */ @@ -32,9 +33,9 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Spkg.h" /* Dataspaces */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Spkg.h" /* Dataspaces */ /****************/ @@ -74,13 +75,13 @@ /*------------------------------------------------------------------------- - * Function: H5S_debug + * Function: H5S_debug * - * Purpose: Prints debugging information about a dataspace. + * Purpose: Prints debugging information about a dataspace. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Tuesday, July 21, 1998 * *------------------------------------------------------------------------- @@ -88,7 +89,7 @@ herr_t H5S_debug(H5F_t *f, const void *_mesg, FILE *stream, int indent, int fwidth) { - const H5S_t *mesg = (const H5S_t*)_mesg; + const H5S_t *mesg = (const H5S_t*)_mesg; FUNC_ENTER_NOAPI_NOINIT_NOERR diff --git a/src/H5Shyper.c b/src/H5Shyper.c index b352374..9f75785 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -12,10 +12,10 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> + * Programmer: Quincey Koziol * Thursday, June 18, 1998 * - * Purpose: Hyperslab selection dataspace I/O functions. + * Purpose: Hyperslab selection dataspace I/O functions. */ /****************/ @@ -30,8 +30,8 @@ /***********/ #include "H5private.h" /* Generic Functions */ #include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ #include "H5Iprivate.h" /* ID Functions */ #include "H5MMprivate.h" /* Memory management */ #include "H5Spkg.h" /* Dataspace functions */ @@ -304,7 +304,7 @@ H5FL_EXTERN(H5S_sel_iter_t); static uint64_t H5S_hyper_op_gen_g = 1; -/* Uncomment this, to provide the debugging routines for printing selection info */ +/* Uncomment this to provide the debugging routines for printing selection info */ /* #define H5S_HYPER_DEBUG */ #ifdef H5S_HYPER_DEBUG static herr_t @@ -385,7 +385,7 @@ H5S__hyper_print_diminfo(FILE *f, const H5S_t *space) FUNC_LEAVE_NOAPI(SUCCEED) } - + /*-------------------------------------------------------------------------- NAME H5S__hyper_print_spans_dfs @@ -531,7 +531,7 @@ H5S__hyper_print_space_dfs(FILE *f, const H5S_t *space) } /* end H5S__hyper_print_space_dfs() */ #endif /* H5S_HYPER_DEBUG */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_get_op_gen * @@ -555,15 +555,15 @@ H5S__hyper_get_op_gen(void) FUNC_LEAVE_NOAPI(H5S_hyper_op_gen_g++); } /* end H5S__hyper_op_gen() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_init * - * Purpose: Initializes iteration information for hyperslab selection. + * Purpose: Initializes iteration information for hyperslab selection. * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, February 24, 2001 * * Notes: If the 'iter->elmt_size' field is set to zero, the regular @@ -794,16 +794,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_iter_init() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_coords * - * Purpose: Retrieve the current coordinates of iterator for current + * Purpose: Retrieve the current coordinates of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, April 22, 2003 * *------------------------------------------------------------------------- @@ -879,16 +879,16 @@ H5S__hyper_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_coords() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_block * - * Purpose: Retrieve the current block of iterator for current + * Purpose: Retrieve the current block of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Monday, June 2, 2003 * * Notes: This routine assumes that the iterator is always located at @@ -916,28 +916,28 @@ H5S__hyper_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end) for(u = 0; u < iter->rank; u++) { start[u] = iter->u.hyp.off[u]; end[u] = (start[u] + iter->u.hyp.diminfo[u].block) - 1; - } /* end for */ + } } /* end if */ else { /* Copy the start & end of the block */ for(u = 0; u < iter->rank; u++) { start[u] = iter->u.hyp.span[u]->low; end[u] = iter->u.hyp.span[u]->high; - } /* end for */ + } } /* end else */ FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_block() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_nelmts * - * Purpose: Return number of elements left to process in iterator + * Purpose: Return number of elements left to process in iterator * - * Return: Non-negative number of elements on success, zero on failure + * Return: Non-negative number of elements on success, zero on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * *------------------------------------------------------------------------- @@ -953,7 +953,7 @@ H5S__hyper_iter_nelmts(const H5S_sel_iter_t *iter) FUNC_LEAVE_NOAPI(iter->elmt_left) } /* end H5S__hyper_iter_nelmts() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_has_next_block @@ -1009,17 +1009,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_iter_has_next_block() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_next * - * Purpose: Moves a hyperslab iterator to the beginning of the next sequence - * of elements to read. Handles walking off the end in all dimensions. + * Purpose: Moves a hyperslab iterator to the beginning of the next sequence + * of elements to read. Handles walking off the end in all dimensions. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Friday, September 8, 2000 * *------------------------------------------------------------------------- @@ -1216,17 +1216,17 @@ H5S__hyper_iter_next(H5S_sel_iter_t *iter, size_t nelem) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_next() */ - + /*------------------------------------------------------------------------- * Function: H5S__hyper_iter_next_block * - * Purpose: Moves a hyperslab iterator to the beginning of the next sequence - * of elements to read. Handles walking off the end in all dimensions. + * Purpose: Moves a hyperslab iterator to the beginning of the next sequence + * of elements to read. Handles walking off the end in all dimensions. * - * Return: Success: non-negative - * Failure: negative + * Return: Success: non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 3, 2003 * *------------------------------------------------------------------------- @@ -1391,7 +1391,7 @@ H5S__hyper_iter_next_block(H5S_sel_iter_t *iter) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_next_block() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_get_seq_list_gen @@ -1409,7 +1409,7 @@ H5S__hyper_iter_next_block(H5S_sel_iter_t *iter) hsize_t *off; OUT: Array of offsets size_t *len; OUT: Array of lengths RETURNS - Non-negative on success/Negative on failure. + Non-negative on success/Negative on failure DESCRIPTION Use the selection in the dataspace to generate a list of byte offsets and lengths for the region(s) selected. Start/Restart from the position in the @@ -1756,7 +1756,7 @@ H5S__hyper_iter_get_seq_list_gen(H5S_sel_iter_t *iter, size_t maxseq, size_t max /* Work back up through the dimensions */ while(curr_dim >= 0) { /* Reset the current span */ - curr_span = ispan[curr_dim]; + curr_span = ispan[curr_dim]; /* Increment absolute position */ abs_arr[curr_dim]++; @@ -1843,7 +1843,7 @@ H5S__hyper_iter_get_seq_list_gen(H5S_sel_iter_t *iter, size_t maxseq, size_t max FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_get_seq_list_gen() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_get_seq_list_opt @@ -2110,15 +2110,15 @@ H5S__hyper_iter_get_seq_list_opt(H5S_sel_iter_t *iter, size_t maxseq, size_t max /* Read in data until an entire sequence can't be written out any longer */ while(curr_rows > 0) { -#define DUFF_GUTS \ -/* Store the sequence information */ \ -off[curr_seq] = loc; \ -len[curr_seq] = actual_bytes; \ - \ -/* Increment sequence count */ \ -curr_seq++; \ - \ -/* Increment information to reflect block just processed */ \ +#define DUFF_GUTS \ +/* Store the sequence information */ \ +off[curr_seq] = loc; \ +len[curr_seq] = actual_bytes; \ + \ +/* Increment sequence count */ \ +curr_seq++; \ + \ +/* Increment information to reflect block just processed */ \ loc += fast_dim_buf_off; #ifdef NO_DUFFS_DEVICE @@ -2287,7 +2287,7 @@ loc += fast_dim_buf_off; FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_get_seq_list_opt() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_get_seq_list_single @@ -2565,7 +2565,7 @@ H5S__hyper_iter_get_seq_list_single(H5S_sel_iter_t *iter, size_t maxseq, size_t FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_get_seq_list_single() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_get_seq_list @@ -2574,7 +2574,6 @@ H5S__hyper_iter_get_seq_list_single(H5S_sel_iter_t *iter, size_t maxseq, size_t USAGE herr_t H5S__hyper_iter_get_seq_list(iter,maxseq,maxelem,nseq,nelem,off,len) H5S_t *space; IN: Dataspace containing selection to use. - unsigned flags; IN: Flags for extra information about operation H5S_sel_iter_t *iter; IN/OUT: Selection iterator describing last position of interest in selection. size_t maxseq; IN: Maximum number of sequences to generate @@ -2727,7 +2726,7 @@ H5S__hyper_iter_get_seq_list(H5S_sel_iter_t *iter, size_t maxseq, FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_iter_get_seq_list() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_iter_release @@ -2760,7 +2759,7 @@ H5S__hyper_iter_release(H5S_sel_iter_t *iter) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_iter_release() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_new_span @@ -2808,7 +2807,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_new_span() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_new_span_info @@ -2851,7 +2850,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_new_span_info() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_copy_span_helper @@ -2947,7 +2946,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_copy_span_helper() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_copy_span @@ -2992,7 +2991,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_copy_span() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_cmp_spans @@ -3013,8 +3012,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static H5_ATTR_PURE hbool_t -H5S__hyper_cmp_spans(const H5S_hyper_span_info_t *span_info1, - const H5S_hyper_span_info_t *span_info2) +H5S__hyper_cmp_spans(const H5S_hyper_span_info_t *span_info1, const H5S_hyper_span_info_t *span_info2) { hbool_t ret_value = TRUE; /* Return value */ @@ -3088,7 +3086,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_cmp_spans() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_free_span_info @@ -3145,7 +3143,7 @@ H5S__hyper_free_span_info(H5S_hyper_span_info_t *span_info) FUNC_LEAVE_NOAPI_VOID } /* end H5S__hyper_free_span_info() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_free_span @@ -3183,7 +3181,7 @@ H5S__hyper_free_span(H5S_hyper_span_t *span) FUNC_LEAVE_NOAPI_VOID } /* end H5S__hyper_free_span() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_copy @@ -3258,7 +3256,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_copy() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_is_valid @@ -3317,7 +3315,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_is_valid() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_span_nblocks_helper @@ -3385,7 +3383,7 @@ H5S__hyper_span_nblocks_helper(H5S_hyper_span_info_t *spans, unsigned op_info_i, FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_span_nblocks_helper() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_span_nblocks @@ -3426,7 +3424,7 @@ H5S__hyper_span_nblocks(H5S_hyper_span_info_t *spans) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_span_nblocks() */ - + /*-------------------------------------------------------------------------- NAME H5S__get_select_hyper_nblocks @@ -3463,7 +3461,7 @@ H5S__get_select_hyper_nblocks(const H5S_t *space, hbool_t app_ref) /* Check each dimension */ for(ret_value = 1, u = 0; u < space->extent.rank; u++) ret_value *= (app_ref ? space->select.sel_info.hslab->diminfo.app[u].count : - space->select.sel_info.hslab->diminfo.opt[u].count); + space->select.sel_info.hslab->diminfo.opt[u].count); } /* end if */ else ret_value = H5S__hyper_span_nblocks(space->select.sel_info.hslab->span_lst); @@ -3471,7 +3469,7 @@ H5S__get_select_hyper_nblocks(const H5S_t *space, hbool_t app_ref) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__get_select_hyper_nblocks() */ - + /*-------------------------------------------------------------------------- NAME H5Sget_select_hyper_nblocks @@ -3512,7 +3510,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_select_hyper_nblocks() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_get_enc_size_real @@ -3707,13 +3705,13 @@ H5S__hyper_get_version_enc_size(const H5S_t *space, hsize_t block_count, uint32_ default: HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "unknown hyperslab selection version") break; - } /* end switch */ + } done: FUNC_LEAVE_NOAPI(ret_value) } /* H5S__hyper_get_version_enc_size() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_serial_size @@ -3738,14 +3736,15 @@ H5S__hyper_serial_size(const H5S_t *space) { hsize_t block_count = 0; /* block counter for regular hyperslabs */ uint32_t version; /* Version number */ - uint8_t enc_size; /* Encoded size of hyerslab selection info */ + uint8_t enc_size; /* Encoded size of hyperslab selection info */ hssize_t ret_value = -1; /* return value */ FUNC_ENTER_STATIC HDassert(space); - if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */ + /* Determine the number of blocks */ + if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */ block_count = H5S__get_select_hyper_nblocks(space, FALSE); /* Determine the version and the encoded size */ @@ -3787,7 +3786,7 @@ H5S__hyper_serial_size(const H5S_t *space) */ HDassert(enc_size == 8); ret_value = (hssize_t)17 + ((hssize_t)4 * (hssize_t)8 * (hssize_t)space->extent.rank); - } /* end else-if */ + } else { HDassert(version == H5S_HYPER_VERSION_1); HDassert(enc_size == 4); @@ -3807,7 +3806,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_serial_size() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_serialize_helper @@ -3928,14 +3927,14 @@ H5S__hyper_serialize_helper(const H5S_hyper_span_info_t *spans, FUNC_LEAVE_NOAPI_VOID } /* end H5S__hyper_serialize_helper() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_serialize PURPOSE Serialize the current selection into a user-provided buffer. USAGE - herr_t H5S_hyper_serialize(space, p) + herr_t H5S__hyper_serialize(space, p) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of @@ -3958,7 +3957,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p) hsize_t offset[H5S_MAX_RANK]; /* Offset of element in dataspace */ hsize_t start[H5S_MAX_RANK]; /* Location of start of hyperslab */ hsize_t end[H5S_MAX_RANK]; /* Location of end of hyperslab */ - uint8_t *pp; /* Local pointer for decoding */ + uint8_t *pp; /* Local pointer for encoding */ uint8_t *lenp = NULL; /* pointer to length location for later storage */ uint32_t len = 0; /* number of bytes used */ uint32_t version; /* Version number */ @@ -3969,7 +3968,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p) unsigned u; /* Local counting variable */ hbool_t complete = FALSE; /* Whether we are done with the iteration */ hbool_t is_regular; /* Whether selection is regular */ - uint8_t enc_size; + uint8_t enc_size; /* Encoded size */ herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_STATIC @@ -3984,7 +3983,8 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p) ndims = space->extent.rank; diminfo = space->select.sel_info.hslab->diminfo.opt; - if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */ + /* Calculate the # of blocks */ + if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */ block_count = H5S__get_select_hyper_nblocks(space, FALSE); /* Determine the version and the encoded size */ @@ -4120,7 +4120,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p) tmp_count[fast_dim]--; } /* end while */ - /* Work on other dimensions if necessary */ + /* Work on other dimensions if necessary */ if(fast_dim > 0) { int temp_dim; /* Temporary rank holder */ @@ -4141,7 +4141,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p) if(temp_dim == 0) complete = TRUE; - /* Reset the block count in this dimension */ + /* Reset the block count in this dimension */ tmp_count[temp_dim] = diminfo[temp_dim].count; /* Wrapped a dimension, go up to next dimension */ @@ -4204,7 +4204,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_serialize() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_deserialize @@ -4284,7 +4284,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p) /* Check for unknown flags */ if(flags & ~H5S_SELECT_FLAG_BITS) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTLOAD, FAIL, "unknown flag for selection") - } /* end if */ + } else { /* Skip over the remainder of the header */ pp += 8; @@ -4300,7 +4300,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p) if(!*space) { /* Patch the rank of the allocated dataspace */ - (void)HDmemset(dims, 0, (size_t)rank * sizeof(dims[0])); + HDmemset(dims, 0, (size_t)rank * sizeof(dims[0])); if(H5S_set_extent_simple(tmp_space, rank, dims, NULL) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't set dimensions") } /* end if */ @@ -4315,7 +4315,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p) /* Sanity checks */ HDassert(H5S_UNLIMITED == HSIZE_UNDEF); - HDassert(version >= 2); + HDassert(version >= H5S_HYPER_VERSION_2); /* Decode start/stride/block/count */ switch(enc_size) { @@ -4383,7 +4383,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p) size_t num_elem; /* Number of elements in selection */ unsigned v; /* Local counting variable */ - /* decode the number of blocks */ + /* Decode the number of blocks */ switch(enc_size) { case H5S_SELECT_INFO_ENC_SIZE_2: UINT16DECODE(pp, num_elem); @@ -4461,7 +4461,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_deserialize() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_span_blocklist @@ -4566,7 +4566,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_span_blocklist() */ - + /*-------------------------------------------------------------------------- NAME H5S__get_select_hyper_blocklist @@ -4748,7 +4748,7 @@ H5S__get_select_hyper_blocklist(H5S_t *space, hsize_t startblock, FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__get_select_hyper_blocklist() */ - + /*-------------------------------------------------------------------------- NAME H5Sget_select_hyper_blocklist @@ -4761,7 +4761,7 @@ H5S__get_select_hyper_blocklist(H5S_t *space, hsize_t startblock, hsize_t numblocks; IN: Number of hyperslab blocks to get hsize_t buf[]; OUT: List of hyperslab blocks selected RETURNS - Non-negative on success/Negative on failure + Non-negative on success, negative on failure DESCRIPTION Puts a list of the hyperslab blocks into the user's buffer. The blocks start with the 'startblock'th block in the list of blocks and put @@ -4809,7 +4809,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_select_hyper_blocklist() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_bounds @@ -4890,7 +4890,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_bounds() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_offset @@ -4999,7 +4999,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_offset() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_unlim_dim @@ -5026,7 +5026,7 @@ H5S__hyper_unlim_dim(const H5S_t *space) FUNC_LEAVE_NOAPI(space->select.sel_info.hslab->unlim_dim); } /* end H5S__hyper_unlim_dim() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_num_elem_non_unlim @@ -5068,7 +5068,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_num_elem_non_unlim() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_is_contiguous @@ -5254,7 +5254,7 @@ H5S__hyper_is_contiguous(const H5S_t *space) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_is_contiguous() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_is_single @@ -5327,7 +5327,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_is_single() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_is_regular @@ -5372,7 +5372,7 @@ H5S__hyper_is_regular(const H5S_t *space) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_is_regular() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_spans_shape_same_helper @@ -5724,7 +5724,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_shape_same() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_release @@ -5765,7 +5765,7 @@ H5S__hyper_release(H5S_t *space) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__hyper_release() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_coord_to_span @@ -5828,7 +5828,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_coord_to_span() */ - + /*-------------------------------------------------------------------------- NAME H5S__hyper_add_span_element_helper @@ -6494,7 +6494,7 @@ H5S__hyper_adjust_u(H5S_t *space, const hsize_t *offset) if(0 != offset[u]) { non_zero_offset = TRUE; break; - } /* end if */ + } /* Only perform operation if the offset is non-zero */ if(non_zero_offset) { @@ -7060,7 +7060,7 @@ H5S__hyper_adjust_s(H5S_t *space, const hssize_t *offset) * simultaneous operations */ H5S__hyper_adjust_s_helper(space->select.sel_info.hslab->span_lst, space->extent.rank, offset, 0, op_gen); } /* end if */ - } /* end if */ + } done: FUNC_LEAVE_NOAPI(ret_value) @@ -9020,7 +9020,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__hyper_generate_spans() */ - + /*-------------------------------------------------------------------------- NAME H5S__check_spans_overlap @@ -9404,11 +9404,11 @@ done: /*------------------------------------------------------------------------- * Function: H5S__generate_hyperlab * - * Purpose: Generate hyperslab information from H5S_select_hyperslab() + * Purpose: Generate hyperslab information from H5S_select_hyperslab() * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, September 12, 2000 * *------------------------------------------------------------------------- @@ -9824,11 +9824,11 @@ done: /*------------------------------------------------------------------------- * Function: H5S_select_hyperslab * - * Purpose: Internal version of H5Sselect_hyperslab(). + * Purpose: Internal version of H5Sselect_hyperslab(). * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Wednesday, January 10, 2001 * *------------------------------------------------------------------------- @@ -10495,9 +10495,9 @@ hid_t H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op, const hsize_t start[], const hsize_t stride[], const hsize_t count[], const hsize_t block[]) { - H5S_t *space; /* Dataspace to modify selection of */ - H5S_t *new_space = NULL; /* New dataspace created */ - hid_t ret_value; /* Return value */ + H5S_t *space; /* Dataspace to modify selection of */ + H5S_t *new_space = NULL; /* New dataspace created */ + hid_t ret_value; /* Return value */ FUNC_ENTER_API(H5I_INVALID_HID) H5TRACE6("i", "iSs*h*h*h*h", space_id, op, start, stride, count, block); @@ -10529,11 +10529,11 @@ done: /*------------------------------------------------------------------------- * Function: H5S__combine_select * - * Purpose: Internal version of H5Scombine_select(). + * Purpose: Internal version of H5Scombine_select(). * - * Return: New dataspace on success/NULL on failure + * Return: New dataspace on success/NULL on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, October 30, 2001 * *------------------------------------------------------------------------- @@ -10668,15 +10668,15 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Scombine_select() */ - + /*------------------------------------------------------------------------- * Function: H5S__modify_select * - * Purpose: Internal version of H5Smodify_select(). + * Purpose: Internal version of H5Smodify_select(). * - * Return: New dataspace on success/NULL on failure + * Return: New dataspace on success/NULL on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, October 30, 2001 * *------------------------------------------------------------------------- @@ -12174,7 +12174,7 @@ H5S_hyper_get_first_inc_block(const H5S_t *space, hsize_t clip_size, hbool_t *partial) { H5S_hyper_sel_t *hslab; /* Convenience pointer to hyperslab info */ - H5S_hyper_dim_t *diminfo; /* Convenience pointer to diminfo.opt in unlimited dimension */ + H5S_hyper_dim_t *diminfo; /* Convenience pointer to diminfo in unlimited dimension */ hsize_t ret_value = 0; FUNC_ENTER_NOAPI(0) diff --git a/src/H5Smpio.c b/src/H5Smpio.c index 33dd492..147fd25 100644 --- a/src/H5Smpio.c +++ b/src/H5Smpio.c @@ -14,7 +14,7 @@ /* * Programmer: rky 980813 * - * Purpose: Create MPI data types for HDF5 selections. + * Purpose: Create MPI data types for HDF5 selections. * */ @@ -148,14 +148,14 @@ H5S__mpio_all_type(const H5S_t *space, size_t elmt_size, *new_type = MPI_BYTE; H5_CHECKED_ASSIGN(*count, int, total_bytes, hsize_t); *is_derived_type = FALSE; - } /* end if */ + } else { /* Create a LARGE derived datatype for this transfer */ if(H5_mpio_create_large_type(total_bytes, 0, MPI_BYTE, new_type) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large datatype from the all selection") *count = 1; *is_derived_type = TRUE; - } /* end else */ + } done: FUNC_LEAVE_NOAPI(ret_value) @@ -253,7 +253,7 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points, /* Commit MPI datatype for later use */ if(MPI_SUCCESS != (mpi_code = MPI_Type_commit(new_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code) - } /* end if */ + } else { /* use LARGE_DATATYPE:: * We'll create an hindexed_block type for every 2G point count and then combine @@ -295,7 +295,7 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points, #if MPI_VERSION >= 3 if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block((int)bigio_count, 1, &disp[(hsize_t)i*bigio_count], elmt_type, &inner_types[i]))) - HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code) + HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code); #else if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)bigio_count, blocks, &disp[i*bigio_count], elmt_type, &inner_types[i]))) @@ -309,7 +309,7 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points, #if MPI_VERSION >= 3 if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block(remaining_points, 1, &disp[(hsize_t)num_big_types*bigio_count], elmt_type, &inner_types[num_big_types]))) - HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code) + HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code); #else if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)remaining_points, blocks, &disp[num_big_types*bigio_count], elmt_type, &inner_types[num_big_types]))) @@ -317,11 +317,12 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points, #endif inner_blocks[num_big_types] = 1; inner_disps[num_big_types] = 0; - } /* end if */ + } if(MPI_SUCCESS != (mpi_code = MPI_Type_create_struct(total_types, inner_blocks, inner_disps, inner_types, new_type))) - HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_struct", mpi_code) + HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_struct", mpi_code); + for(i = 0; i < total_types; i++) MPI_Type_free(&inner_types[i]); @@ -492,7 +493,7 @@ done: * selection and so the memory datatype has to be permuted using the * permutation map created by the file selection. * - * Note: This routine is called from H5_mpio_space_type(), which is + * Note: This routine is called from H5S_mpio_space_type(), which is * called first for the file dataspace and creates * * Return: Non-negative on success, negative on failure. @@ -799,7 +800,7 @@ if(H5DEBUG(S)) { /* Use a single MPI datatype that has a 32 bit size */ if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)elmt_size, MPI_BYTE, &inner_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code) - } /* end if */ + } else /* Create the compound datatype for this operation (> 2GB) */ if(H5_mpio_create_large_type(elmt_size, 0, MPI_BYTE, &inner_type) < 0) @@ -836,7 +837,7 @@ if(H5DEBUG(S)) MPI_Type_free(&inner_type); if(mpi_code != MPI_SUCCESS) HMPI_GOTO_ERROR(FAIL, "couldn't create MPI vector type", mpi_code) - } /* end if */ + } else { /* Things get a bit more complicated and require LARGE_DATATYPE processing * There are two MPI datatypes that need to be created: @@ -858,7 +859,7 @@ if(H5DEBUG(S)) if(bigio_count < d[i].block) { if(H5_mpio_create_large_type(d[i].block, 0, inner_type, &block_type) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large block datatype in hyper selection") - } /* end if */ + } else if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)d[i].block, inner_type, &block_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code) @@ -879,7 +880,7 @@ if(H5DEBUG(S)) if(bigio_count < d[i].count) { if(H5_mpio_create_large_type(d[i].count, stride_in_bytes, block_type, &outer_type) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large outer datatype in hyper selection") - } /* end if */ + } /* otherwise a regular create_hvector will do */ else if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hvector((int)d[i].count, /* count */ @@ -891,7 +892,7 @@ if(H5DEBUG(S)) MPI_Type_free(&block_type); MPI_Type_free(&inner_type); - } /* end else */ + } /* end else */ /**************************************** * Then build the dimension type as (start, vector type, xtent). @@ -1004,7 +1005,7 @@ H5S__mpio_span_hyper_type(const H5S_t *space, size_t elmt_size, if(bigio_count >= elmt_size) { if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)elmt_size, MPI_BYTE, &elmt_type))) HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code) - } /* end if */ + } else if(H5_mpio_create_large_type(elmt_size, 0, MPI_BYTE, &elmt_type) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large element datatype in span_hyper selection") @@ -1113,7 +1114,6 @@ H5S__obtain_datatype(H5S_hyper_span_info_t *spans, const hsize_t *down, { H5S_hyper_span_t *span; /* Hyperslab span to iterate with */ hsize_t bigio_count; /* Transition point to create derived type */ - size_t alloc_count = 0; /* Number of span tree nodes allocated at this level */ size_t outercount = 0; /* Number of span tree nodes at this level */ MPI_Datatype *inner_type = NULL; diff --git a/src/H5Snone.c b/src/H5Snone.c index 630d1d5..672302d 100644 --- a/src/H5Snone.c +++ b/src/H5Snone.c @@ -29,7 +29,7 @@ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ +#include "H5Eprivate.h" /* Error handling */ #include "H5Iprivate.h" /* ID Functions */ #include "H5Spkg.h" /* Dataspace functions */ #include "H5VMprivate.h" /* Vector functions */ @@ -68,8 +68,7 @@ static htri_t H5S__none_intersect_block(const H5S_t *space, const hsize_t *start static herr_t H5S__none_adjust_u(H5S_t *space, const hsize_t *offset); static herr_t H5S__none_adjust_s(H5S_t *space, const hssize_t *offset); static herr_t H5S__none_project_scalar(const H5S_t *space, hsize_t *offset); -static herr_t H5S__none_project_simple(const H5S_t *space, H5S_t *new_space, - hsize_t *offset); +static herr_t H5S__none_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); static herr_t H5S__none_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); /* Selection iteration callbacks */ @@ -143,13 +142,13 @@ static const H5S_sel_iter_class_t H5S_sel_iter_none[1] = {{ /*------------------------------------------------------------------------- - * Function: H5S__none_iter_init + * Function: H5S__none_iter_init * - * Purpose: Initializes iteration information for "none" selection. + * Purpose: Initializes iteration information for "none" selection. * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * *------------------------------------------------------------------------- @@ -171,21 +170,20 @@ H5S__none_iter_init(const H5S_t H5_ATTR_UNUSED *space, H5S_sel_iter_t *iter) /*------------------------------------------------------------------------- - * Function: H5S__none_iter_coords + * Function: H5S__none_iter_coords * - * Purpose: Retrieve the current coordinates of iterator for current + * Purpose: Retrieve the current coordinates of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, April 22, 2003 * *------------------------------------------------------------------------- */ static herr_t -H5S__none_iter_coords(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, - hsize_t H5_ATTR_UNUSED *coords) +H5S__none_iter_coords(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, hsize_t H5_ATTR_UNUSED *coords) { FUNC_ENTER_STATIC_NOERR @@ -198,21 +196,20 @@ H5S__none_iter_coords(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, /*------------------------------------------------------------------------- - * Function: H5S__none_iter_block + * Function: H5S__none_iter_block * - * Purpose: Retrieve the current block of iterator for current + * Purpose: Retrieve the current block of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Monday, June 2, 2003 * *------------------------------------------------------------------------- */ static herr_t -H5S__none_iter_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, - hsize_t H5_ATTR_UNUSED *start, hsize_t H5_ATTR_UNUSED *end) +H5S__none_iter_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, hsize_t H5_ATTR_UNUSED *start, hsize_t H5_ATTR_UNUSED *end) { FUNC_ENTER_STATIC_NOERR @@ -226,13 +223,13 @@ H5S__none_iter_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, /*------------------------------------------------------------------------- - * Function: H5S__none_iter_nelmts + * Function: H5S__none_iter_nelmts * - * Purpose: Return number of elements left to process in iterator + * Purpose: Return number of elements left to process in iterator * - * Return: Non-negative number of elements on success, zero on failure + * Return: Non-negative number of elements on success, zero on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * *------------------------------------------------------------------------- @@ -472,8 +469,7 @@ H5S__none_release(H5S_t H5_ATTR_UNUSED *space) REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__none_copy(H5S_t *dst, const H5S_t H5_ATTR_UNUSED *src, - hbool_t H5_ATTR_UNUSED share_selection) +H5S__none_copy(H5S_t *dst, const H5S_t H5_ATTR_UNUSED *src, hbool_t H5_ATTR_UNUSED share_selection) { FUNC_ENTER_STATIC_NOERR @@ -586,8 +582,8 @@ H5S__none_serialize(const H5S_t *space, uint8_t **p) HDassert(pp); /* Store the preamble information */ - UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ - UINT32ENCODE(pp, (uint32_t)H5S_NONE_VERSION_1); /* Store the version number */ + UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ + UINT32ENCODE(pp, (uint32_t)H5S_NONE_VERSION_1); /* Store the version number */ UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */ UINT32ENCODE(pp, (uint32_t)0); /* Store the additional information length */ @@ -698,8 +694,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__none_bounds(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUSED *start, - hsize_t H5_ATTR_UNUSED *end) +H5S__none_bounds(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUSED *start, hsize_t H5_ATTR_UNUSED *end) { FUNC_ENTER_STATIC_NOERR @@ -708,7 +703,7 @@ H5S__none_bounds(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUSED *star HDassert(end); FUNC_LEAVE_NOAPI(FAIL) -} /* end H5Sget_none_bounds() */ +} /* end H5S_none_bounds() */ /*-------------------------------------------------------------------------- @@ -991,11 +986,11 @@ H5S__none_adjust_s(H5S_t H5_ATTR_UNUSED *space, const hssize_t H5_ATTR_UNUSED *o /*------------------------------------------------------------------------- - * Function: H5S__none_project_scalar + * Function: H5S__none_project_scalar * - * Purpose: Projects a 'none' selection into a scalar dataspace + * Purpose: Projects a 'none' selection into a scalar dataspace * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * * Programmer: Quincey Koziol * Sunday, July 18, 2010 @@ -1016,14 +1011,14 @@ H5S__none_project_scalar(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUS /*------------------------------------------------------------------------- - * Function: H5S__none_project_simple + * Function: H5S__none_project_simple * - * Purpose: Projects an 'none' selection onto/into a simple dataspace + * Purpose: Projects an 'none' selection onto/into a simple dataspace * of a different rank * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Sunday, July 18, 2010 * *------------------------------------------------------------------------- diff --git a/src/H5Spkg.h b/src/H5Spkg.h index da2dd4a..e08fedf 100644 --- a/src/H5Spkg.h +++ b/src/H5Spkg.h @@ -324,11 +324,9 @@ struct H5S_t { /* Selection iteration methods */ /* Method to retrieve the current coordinates of iterator for current selection */ -typedef herr_t (*H5S_sel_iter_coords_func_t)(const H5S_sel_iter_t *iter, - hsize_t *coords); +typedef herr_t (*H5S_sel_iter_coords_func_t)(const H5S_sel_iter_t *iter, hsize_t *coords); /* Method to retrieve the current block of iterator for current selection */ -typedef herr_t (*H5S_sel_iter_block_func_t)(const H5S_sel_iter_t *iter, - hsize_t *start, hsize_t *end); +typedef herr_t (*H5S_sel_iter_block_func_t)(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); /* Method to determine number of elements left in iterator for current selection */ typedef hsize_t (*H5S_sel_iter_nelmts_func_t)(const H5S_sel_iter_t *iter); /* Method to determine if there are more blocks left in the current selection */ diff --git a/src/H5Spoint.c b/src/H5Spoint.c index 6948125..be9015f 100644 --- a/src/H5Spoint.c +++ b/src/H5Spoint.c @@ -15,7 +15,7 @@ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> * Tuesday, June 16, 1998 * - * Purpose: Point selection dataspace I/O functions. + * Purpose: Point selection dataspace I/O functions. */ /****************/ @@ -30,8 +30,8 @@ /***********/ #include "H5private.h" /* Generic Functions */ #include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ #include "H5Iprivate.h" /* ID Functions */ #include "H5MMprivate.h" /* Memory management */ #include "H5Spkg.h" /* Dataspace functions */ @@ -75,21 +75,17 @@ static htri_t H5S__point_is_contiguous(const H5S_t *space); static htri_t H5S__point_is_single(const H5S_t *space); static htri_t H5S__point_is_regular(const H5S_t *space); static htri_t H5S__point_shape_same(const H5S_t *space1, const H5S_t *space2); -static htri_t H5S__point_intersect_block(const H5S_t *space, const hsize_t *start, - const hsize_t *end); +static htri_t H5S__point_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); static herr_t H5S__point_adjust_u(H5S_t *space, const hsize_t *offset); static herr_t H5S__point_adjust_s(H5S_t *space, const hssize_t *offset); -static herr_t H5S__point_project_scalar(const H5S_t *spasce, hsize_t *offset); -static herr_t H5S__point_project_simple(const H5S_t *space, H5S_t *new_space, - hsize_t *offset); +static herr_t H5S__point_project_scalar(const H5S_t *space, hsize_t *offset); +static herr_t H5S__point_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); static herr_t H5S__point_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); -static herr_t H5S__point_get_version_enc_size(const H5S_t *space, - uint32_t *version, uint8_t *enc_size); +static herr_t H5S__point_get_version_enc_size(const H5S_t *space, uint32_t *version, uint8_t *enc_size); /* Selection iteration callbacks */ static herr_t H5S__point_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords); -static herr_t H5S__point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, - hsize_t *end); +static herr_t H5S__point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end); static hsize_t H5S__point_iter_nelmts(const H5S_sel_iter_t *iter); static htri_t H5S__point_iter_has_next_block(const H5S_sel_iter_t *iter); static herr_t H5S__point_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem); @@ -169,16 +165,15 @@ H5FL_BARR_DEFINE_STATIC(H5S_pnt_node_t, hcoords_t, H5S_MAX_RANK); /* Declare a free list to manage the H5S_pnt_list_t struct */ H5FL_DEFINE_STATIC(H5S_pnt_list_t); - - + /*------------------------------------------------------------------------- * Function: H5S__point_iter_init * - * Purpose: Initializes iteration information for point selection. + * Purpose: Initializes iteration information for point selection. * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * *------------------------------------------------------------------------- @@ -223,16 +218,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_iter_init() */ - + /*------------------------------------------------------------------------- * Function: H5S__point_iter_coords * - * Purpose: Retrieve the current coordinates of iterator for current + * Purpose: Retrieve the current coordinates of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, April 22, 2003 * *------------------------------------------------------------------------- @@ -252,16 +247,16 @@ H5S__point_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_iter_coords() */ - + /*------------------------------------------------------------------------- - * Function: H5S__point_iter_block + * Function: H5S_point_iter_block * - * Purpose: Retrieve the current block of iterator for current + * Purpose: Retrieve the current block of iterator for current * selection * - * Return: Non-negative on success, negative on failure + * Return: Non-negative on success, negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Monday, June 2, 2003 * *------------------------------------------------------------------------- @@ -283,15 +278,15 @@ H5S__point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_iter_block() */ - + /*------------------------------------------------------------------------- * Function: H5S__point_iter_nelmts * - * Purpose: Return number of elements left to process in iterator + * Purpose: Return number of elements left to process in iterator * - * Return: Non-negative number of elements on success, zero on failure + * Return: Non-negative number of elements on success, zero on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * *------------------------------------------------------------------------- @@ -307,7 +302,7 @@ H5S__point_iter_nelmts(const H5S_sel_iter_t *iter) FUNC_LEAVE_NOAPI(iter->elmt_left) } /* end H5S__point_iter_nelmts() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_iter_has_next_block @@ -343,7 +338,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_iter_has_next_block() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_iter_next @@ -380,7 +375,7 @@ H5S__point_iter_next(H5S_sel_iter_t *iter, size_t nelem) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_iter_next() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_iter_next_block @@ -412,7 +407,7 @@ H5S__point_iter_next_block(H5S_sel_iter_t *iter) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_iter_next_block() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_iter_get_seq_list @@ -543,7 +538,7 @@ H5S__point_iter_get_seq_list(H5S_sel_iter_t *iter, size_t maxseq, size_t maxelem FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_iter_get_seq_list() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_iter_release @@ -577,7 +572,7 @@ H5S__point_iter_release(H5S_sel_iter_t * iter) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_iter_release() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_add @@ -694,7 +689,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_add() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_release @@ -732,7 +727,7 @@ H5S__point_release(H5S_t *space) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_release() */ - + /*-------------------------------------------------------------------------- NAME H5S_select_elements @@ -789,7 +784,7 @@ H5S_select_elements(H5S_t *space, H5S_seloper_t op, size_t num_elem, /* Set the bound box to the default value */ H5VM_array_fill(space->select.sel_info.pnt_lst->low_bounds, &tmp, sizeof(hsize_t), space->extent.rank); HDmemset(space->select.sel_info.pnt_lst->high_bounds, 0, sizeof(hsize_t) * space->extent.rank); - } /* end if */ + } /* Add points to selection */ if(H5S__point_add(space, op, num_elem, coord) < 0) @@ -802,7 +797,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_select_elements() */ - + /*-------------------------------------------------------------------------- NAME H5S__copy_pnt_list @@ -878,7 +873,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__copy_pnt_list() */ - + /*-------------------------------------------------------------------------- NAME H5S__free_pnt_list @@ -920,7 +915,7 @@ H5S__free_pnt_list(H5S_pnt_list_t *pnt_lst) FUNC_LEAVE_NOAPI_VOID } /* end H5S__free_pnt_list() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_copy @@ -948,7 +943,7 @@ H5S__point_copy(H5S_t *dst, const H5S_t *src, hbool_t H5_ATTR_UNUSED share_selec FUNC_ENTER_STATIC - /* Sanity check */ + /* Sanity checks */ HDassert(src); HDassert(dst); @@ -960,7 +955,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_copy() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_is_valid @@ -1004,7 +999,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_is_valid() */ - + /*-------------------------------------------------------------------------- NAME H5Sget_select_elem_npoints @@ -1050,7 +1045,7 @@ done: PURPOSE Determine the version and the size (2, 4 or 8 bytes) to encode point selection info USAGE - hssize_t H5S__point_set_enc_size(space, version, enc_size) + hssize_t H5S__point_get_version_enc_size(space, version, enc_size) const H5S_t *space: IN: Dataspace ID of selection to query uint32_t *version: OUT: The version to use for encoding uint8_t *enc_size: OUT: The size to use for encoding @@ -1161,7 +1156,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5S__point_get_version_enc_size() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_serial_size @@ -1194,7 +1189,7 @@ H5S__point_serial_size(const H5S_t *space) /* Determine the version and encoded size for point selection */ if(H5S__point_get_version_enc_size(space, &version, &enc_size) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine version and enc_size") /* Basic number of bytes required to serialize point selection: */ if(version >= H5S_POINT_VERSION_2) @@ -1220,7 +1215,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_serial_size() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_serialize @@ -1246,7 +1241,7 @@ static herr_t H5S__point_serialize(const H5S_t *space, uint8_t **p) { H5S_pnt_node_t *curr; /* Point information nodes */ - uint8_t *pp; /* Local pointer for decoding */ + uint8_t *pp; /* Local pointer for encoding */ uint8_t *lenp = NULL; /* pointer to length location for later storage */ uint32_t len=0; /* number of bytes used */ unsigned u; /* local counting variable */ @@ -1264,7 +1259,7 @@ H5S__point_serialize(const H5S_t *space, uint8_t **p) /* Determine the version and encoded size for point selection info */ if(H5S__point_get_version_enc_size(space, &version, &enc_size) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine version and enc_size") /* Store the preamble information */ UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */ @@ -1352,8 +1347,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5S__point_serialize() */ - - + /*-------------------------------------------------------------------------- NAME H5S__point_deserialize @@ -1508,7 +1502,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_deserialize() */ - + /*-------------------------------------------------------------------------- NAME H5S__get_select_elem_pointlist @@ -1539,8 +1533,7 @@ done: REVISION LOG --------------------------------------------------------------------------*/ static herr_t -H5S__get_select_elem_pointlist(const H5S_t *space, hsize_t startpoint, - hsize_t numpoints, hsize_t *buf) +H5S__get_select_elem_pointlist(const H5S_t *space, hsize_t startpoint, hsize_t numpoints, hsize_t *buf) { H5S_pnt_node_t *node; /* Point node */ unsigned rank; /* Dataspace rank */ @@ -1573,7 +1566,7 @@ H5S__get_select_elem_pointlist(const H5S_t *space, hsize_t startpoint, FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__get_select_elem_pointlist() */ - + /*-------------------------------------------------------------------------- NAME H5Sget_select_elem_pointlist @@ -1627,7 +1620,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Sget_select_elem_pointlist() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_bounds @@ -1685,7 +1678,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_bounds() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_offset @@ -1749,7 +1742,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_offset() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_unlim_dim @@ -1778,7 +1771,7 @@ H5S__point_unlim_dim(const H5S_t H5_ATTR_UNUSED *space) FUNC_LEAVE_NOAPI(-1) } /* end H5S__point_unlim_dim() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_is_contiguous @@ -1818,7 +1811,7 @@ H5S__point_is_contiguous(const H5S_t *space) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_is_contiguous() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_is_single @@ -1855,7 +1848,7 @@ H5S__point_is_single(const H5S_t *space) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_is_single() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_is_regular @@ -1896,7 +1889,7 @@ H5S__point_is_regular(const H5S_t *space) FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_is_regular() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_shape_same @@ -2004,7 +1997,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_shape_same() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_intersect_block @@ -2061,7 +2054,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_intersect_block() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_adjust_u @@ -2098,7 +2091,7 @@ H5S__point_adjust_u(H5S_t *space, const hsize_t *offset) if(0 != offset[u]) { non_zero_offset = TRUE; break; - } /* end if */ + } /* Only perform operation if the offset is non-zero */ if(non_zero_offset) { @@ -2129,7 +2122,7 @@ H5S__point_adjust_u(H5S_t *space, const hsize_t *offset) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5S__point_adjust_u() */ - + /*-------------------------------------------------------------------------- NAME H5S__point_adjust_s @@ -2199,15 +2192,16 @@ H5S__point_adjust_s(H5S_t *space, const hssize_t *offset) } /* end H5S__point_adjust_s() */ + /*------------------------------------------------------------------------- * Function: H5S__point_project_scalar * - * Purpose: Projects a single element point selection into a scalar + * Purpose: Projects a single element point selection into a scalar * dataspace * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Sunday, July 18, 2010 * *------------------------------------------------------------------------- @@ -2238,16 +2232,16 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_project_scalar() */ - + /*------------------------------------------------------------------------- - * Function: H5S__point_project_simple + * Function: H5S_point_project_simple * - * Purpose: Projects a point selection onto/into a simple dataspace + * Purpose: Projects a point selection onto/into a simple dataspace * of a different rank * - * Return: Non-negative on success, negative on failure. + * Return: Non-negative on success, negative on failure. * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Sunday, July 18, 2010 * *------------------------------------------------------------------------- @@ -2374,7 +2368,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5S__point_project_simple() */ - + /*-------------------------------------------------------------------------- NAME H5Sselect_elements diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h index a61c505..5100f1c 100644 --- a/src/H5Sprivate.h +++ b/src/H5Sprivate.h @@ -183,6 +183,7 @@ typedef struct H5S_sel_iter_op_t { #define H5S_SELECT_ITER_GET_SEQ_LIST(ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN) (H5S_select_iter_get_seq_list(ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN)) #define H5S_SELECT_ITER_RELEASE(ITER) (H5S_select_iter_release(ITER)) #endif /* H5S_MODULE */ + /* Handle these callbacks in a special way, since they have prologs that need to be executed */ #define H5S_SELECT_COPY(DST,SRC,SHARE) (H5S_select_copy(DST,SRC,SHARE)) #define H5S_SELECT_SHAPE_SAME(S1,S2) (H5S_select_shape_same(S1,S2)) diff --git a/src/H5Sselect.c b/src/H5Sselect.c index 1072d7d..c9d7fc0 100644 --- a/src/H5Sselect.c +++ b/src/H5Sselect.c @@ -32,6 +32,7 @@ #include "H5Eprivate.h" /* Error handling */ #include "H5FLprivate.h" /* Free Lists */ #include "H5Iprivate.h" /* IDs */ +#include "H5MMprivate.h" /* Memory management */ #include "H5Spkg.h" /* Dataspaces */ #include "H5VMprivate.h" /* Vector and array functions */ @@ -144,8 +145,8 @@ H5S_select_offset(H5S_t *space, const hssize_t *offset) herr_t H5Soffset_simple(hid_t space_id, const hssize_t *offset) { - H5S_t *space; /* Dataspace to query */ - herr_t ret_value = SUCCEED; /* Return value */ + H5S_t *space; /* Dataspace to modify */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "i*Hs", space_id, offset); @@ -582,7 +583,7 @@ H5S_select_deserialize(H5S_t **space, const uint8_t **p) default: break; - } /* end switch */ + } if(ret_value < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTLOAD, FAIL, "can't deserialize selection") @@ -1170,7 +1171,7 @@ H5S_select_iter_init(H5S_sel_iter_t *sel_iter, const H5S_t *space, if(sel_iter->rank > 0) { H5MM_memcpy(sel_iter->dims, space->extent.size, sizeof(hsize_t) * space->extent.rank); H5MM_memcpy(sel_iter->sel_off, space->select.offset, sizeof(hsize_t) * space->extent.rank); - } /* end if */ + } /* Save the element size */ sel_iter->elmt_size = elmt_size; diff --git a/src/H5Tconv.c b/src/H5Tconv.c index db76543..c1a8199 100644 --- a/src/H5Tconv.c +++ b/src/H5Tconv.c @@ -3110,8 +3110,24 @@ H5T__conv_vlen(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, if(NULL == (tpath = H5T_path_find(src->shared->parent, dst->shared->parent))) HGOTO_ERROR(H5E_DATATYPE, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest datatypes") else if(!H5T_path_noop(tpath)) { - if((tsrc_id = H5I_register(H5I_DATATYPE, H5T_copy(src->shared->parent, H5T_COPY_ALL), FALSE)) < 0 || - (tdst_id = H5I_register(H5I_DATATYPE, H5T_copy(dst->shared->parent, H5T_COPY_ALL), FALSE)) < 0) + H5T_t *tsrc_cpy = NULL, *tdst_cpy = NULL; + + if(NULL == (tsrc_cpy = H5T_copy(src->shared->parent, H5T_COPY_ALL))) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCOPY, FAIL, "unable to copy src type for conversion") + /* References need to know about the src file */ + if(tsrc_cpy->shared->type == H5T_REFERENCE) + if(H5T_set_loc(tsrc_cpy, src->shared->u.vlen.file, H5T_LOC_MEMORY) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't set datatype location"); + + if(NULL == (tdst_cpy = H5T_copy(dst->shared->parent, H5T_COPY_ALL))) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCOPY, FAIL, "unable to copy dst type for conversion") + /* References need to know about the dst file */ + if(tdst_cpy->shared->type == H5T_REFERENCE) + if(H5T_set_loc(tdst_cpy, dst->shared->u.vlen.file, H5T_LOC_MEMORY) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't set datatype location"); + + if(((tsrc_id = H5I_register(H5I_DATATYPE, tsrc_cpy, FALSE)) < 0) + || ((tdst_id = H5I_register(H5I_DATATYPE, tdst_cpy, FALSE)) < 0)) HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, FAIL, "unable to register types for conversion") } /* end else-if */ else diff --git a/src/H5Tref.c b/src/H5Tref.c index b357baa..7c59e75 100644 --- a/src/H5Tref.c +++ b/src/H5Tref.c @@ -144,7 +144,9 @@ H5T__ref_set_loc(const H5T_t *dt, H5VL_object_t *file, H5T_loc_t loc) switch(loc) { case H5T_LOC_MEMORY: /* Memory based reference datatype */ - HDassert(NULL == file); + + /* NB. We allow for the file to be non-NULL when doing + * memory-to-memory conversion */ /* Mark this type as being stored in memory */ dt->shared->u.atomic.u.r.loc = H5T_LOC_MEMORY; @@ -364,9 +366,8 @@ static size_t H5T__ref_mem_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, size_t H5_ATTR_UNUSED src_size, H5VL_object_t *dst_file, hbool_t *dst_copy) { - H5VL_object_t *vol_obj; /* VOL object for src ref's location */ + H5VL_object_t *vol_obj = NULL; /* VOL object for src ref's location */ const H5R_ref_priv_t *src_ref = (const H5R_ref_priv_t *)src_buf; - hbool_t files_equal = FALSE; /* Whether src & dst references are in same file */ char *file_name_buf_dyn = NULL; /* Pointer to dynamically allocated buffer for file name, if static buffer is too small */ unsigned flags = 0; /* References flags */ size_t ret_value = 0; /* Return value */ @@ -377,14 +378,18 @@ H5T__ref_mem_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf HDassert(src_buf); HDassert(src_size == H5T_REF_MEM_SIZE); - /* Retrieve VOL object */ - if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier") + if(NULL != dst_file) { + hbool_t files_equal = TRUE; /* Whether src & dst references are in same file */ - /* Set external flag if referenced file is not destination file */ - if(H5VL_file_is_same(vol_obj, dst_file, &files_equal) < 0) - HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOMPARE, 0, "can't check if files are equal") - flags |= !files_equal ? H5R_IS_EXTERNAL : 0; + /* Retrieve VOL object */ + if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier") + + /* Set external flag if referenced file is not destination file */ + if(H5VL_file_is_same(vol_obj, dst_file, &files_equal) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOMPARE, 0, "can't check if files are equal") + flags |= !files_equal ? H5R_IS_EXTERNAL : 0; + } /* Force re-calculating encoding size if any flags are set */ if(flags || !src_ref->encode_size) { @@ -458,8 +463,8 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, { H5VL_object_t *vol_obj; /* VOL object for src ref's location */ const H5R_ref_priv_t *src_ref = (const H5R_ref_priv_t *)src_buf; - hbool_t files_equal = FALSE; /* Whether src & dst references are in same file */ - char file_name_buf_static[256]; /* File name */ + hbool_t files_equal = TRUE; /* Whether src & dst references are in same file */ + char file_name_buf_static[256] = {'\0'}; /* File name */ char *file_name_buf_dyn = NULL; /* Pointer to dynamically allocated buffer for file name, if static buffer is too small */ ssize_t file_name_len; /* Size of file name buffer */ unsigned flags = 0; /* References flags */ @@ -470,10 +475,15 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, /* Sanity check */ HDassert(src_buf); HDassert(src_size == H5T_REF_MEM_SIZE); - HDassert(dst_file); HDassert(dst_buf); HDassert(dst_size); + /* Memory-to-memory conversion to support vlen conversion */ + if(NULL == dst_file) { + HDmemcpy(dst_buf, src_buf, dst_size); + HGOTO_DONE(ret_value); + } + /* Retrieve VOL object */ if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier") @@ -504,14 +514,16 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, H5CX_set_libver_bounds(NULL); } /* end if */ - /* Get file name */ - if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, sizeof(file_name_buf_static), file_name_buf_static, &file_name_len) < 0) - HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name") - if(file_name_len >= (ssize_t)sizeof(file_name_buf_static)) { - if(NULL == (file_name_buf_dyn = (char *)H5MM_malloc((size_t)file_name_len + 1))) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, 0, "can't allocate space for file name") - if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, (size_t)file_name_len + 1, file_name_buf_dyn, &file_name_len) < 0) + /* Get file name (if external reference) */ + if(flags) { + if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, sizeof(file_name_buf_static), file_name_buf_static, &file_name_len) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name") + if(file_name_len >= (ssize_t)sizeof(file_name_buf_static)) { + if(NULL == (file_name_buf_dyn = (char *)H5MM_malloc((size_t)file_name_len + 1))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, 0, "can't allocate space for file name") + if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, (size_t)file_name_len + 1, file_name_buf_dyn, &file_name_len) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name") + } /* end if */ } /* end if */ /* Encode reference */ @@ -539,7 +551,7 @@ H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size H5R_type_t src_type, H5VL_object_t H5_ATTR_UNUSED *dst_file, void *dst_buf, size_t dst_size, void H5_ATTR_UNUSED *bg_buf) { - H5F_t *src_f; + H5F_t *src_f = NULL; hid_t file_id = H5I_INVALID_HID; H5R_ref_priv_t *dst_ref = (H5R_ref_priv_t *)dst_buf; herr_t ret_value = SUCCEED; @@ -547,14 +559,19 @@ H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size FUNC_ENTER_STATIC /* Sanity check */ - HDassert(src_file); HDassert(src_buf); HDassert(src_size); HDassert(dst_buf); HDassert(dst_size == H5T_REF_MEM_SIZE); + /* Memory-to-memory conversion to support vlen conversion */ + if(NULL == src_file) { + HDmemcpy(dst_buf, src_buf, src_size); + HGOTO_DONE(ret_value); + } + #ifndef NDEBUG - { + if((src_type == H5R_OBJECT1) || (src_type == H5R_DATASET_REGION1)) { hbool_t is_native = FALSE; /* Whether the src file is using the native VOL connector */ /* Check if using native VOL connector */ diff --git a/src/H5Zfletcher32.c b/src/H5Zfletcher32.c index 4d75d14..c40e9b4 100644 --- a/src/H5Zfletcher32.c +++ b/src/H5Zfletcher32.c @@ -12,7 +12,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Raymond Lu <slu@ncsa.uiuc.edu> + * Programmer: Raymond Lu * Jan 3, 2003 */ diff --git a/src/H5Ztrans.c b/src/H5Ztrans.c index dfc984a..1c8d415 100644 --- a/src/H5Ztrans.c +++ b/src/H5Ztrans.c @@ -400,8 +400,6 @@ static void H5Z_print(H5Z_node *tree, FILE *stream); * Return: Always succeeds. * Programmer: Bill Wendling * 26. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -565,8 +563,6 @@ done: * Return: Nothing * Programmer: Bill Wendling * 25. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -634,8 +630,6 @@ done: * NULLure: NULL * Programmer: Bill Wendling * 26. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -728,8 +722,6 @@ done: * NULLure: NULL * Programmer: Bill Wendling * 26. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -828,8 +820,6 @@ done: * NULLure: NULL * Programmer: Bill Wendling * 26. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -972,8 +962,6 @@ done: * NULLure: NULL * Programmer: Bill Wendling * 26. August 2003 - * Modifications: - * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs * *------------------------------------------------------------------------- */ @@ -1002,7 +990,6 @@ done: * Return: SUCCEED if transform applied successfully, FAIL otherwise * Programmer: Leon Arber * 5/1/04 - * Modifications: * *------------------------------------------------------------------------- */ @@ -1115,8 +1102,6 @@ done: * Return: Nothing * Programmer: Leon Arber * 5/1/04 - * Modifications: - * * * Notes: In the case of a polynomial data transform (ie, the left and right subtree * are both of type H5Z_XFORM_SYMBOL), the convention is that the left hand side @@ -1213,8 +1198,6 @@ done: * Function: H5Z_find_type * Return: Native type of datatype that is passed in * Programmer: Leon Arber, 4/20/04 - * Modifications: - * * *------------------------------------------------------------------------- */ @@ -1301,7 +1284,6 @@ done: * of the one passed in. * Programmer: Leon Arber * April 1, 2004. - * Modifications: * *------------------------------------------------------------------------- */ @@ -1375,7 +1357,6 @@ done: * Return: TRUE or FALSE * Programmer: Raymond Lu * 15 March 2012 - * Modifications: * *------------------------------------------------------------------------- */ @@ -1404,7 +1385,6 @@ H5Z_op_is_numbs(H5Z_node* _tree) * Return: TRUE or FALSE * Programmer: Raymond Lu * 15 March 2012 - * Modifications: * *------------------------------------------------------------------------- */ @@ -1490,11 +1470,6 @@ H5Z_xform_reduce_tree(H5Z_node* tree) * Return: None. * Programmer: Leon Arber * April 1, 2004. - * Modifications: - * Raymond Lu - * 15 March 2012 - * I added a new macro H5Z_XFORM_DO_OP6 to handle the special - * operations like -x or +x when the left operand is empty. * *------------------------------------------------------------------------- */ @@ -1525,14 +1500,10 @@ H5Z_do_op(H5Z_node* tree) * Success: SUCCEED * Failure: FAIL * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: May 4, 2004 * - * Comments: - * - * Modifications: - * *------------------------------------------------------------------------- */ H5Z_data_xform_t * @@ -1616,14 +1587,10 @@ done: * Success: SUCCEED * Failure: FAIL * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: May 4, 2004 * - * Comments: - * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t @@ -1662,7 +1629,7 @@ H5Z_xform_destroy(H5Z_data_xform_t *data_xform_prop) * Success: SUCCEED * Failure: FAIL * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: May 4, 2004 * @@ -1742,14 +1709,12 @@ done: * * Return: TRUE for no data transform, FALSE for a data transform * - * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu + * Programmer: Quincey Koziol * * Date: May 4, 2004 * * Comments: Can't fail * - * Modifications: - * *------------------------------------------------------------------------- */ hbool_t @@ -1773,12 +1738,10 @@ H5Z_xform_noop(const H5Z_data_xform_t *data_xform_prop) * Return: * Pointer to a copy of the string in the data_xform property. * - * Programmer: Leon Arber, larber@ncsa.uiuc.edu + * Programmer: Leon Arber * * Date: Sept. 4, 2004 * - * Modifications: - * *------------------------------------------------------------------------- */ const char * diff --git a/src/H5dbg.c b/src/H5dbg.c index 4878884..c5dd55e 100644 --- a/src/H5dbg.c +++ b/src/H5dbg.c @@ -15,7 +15,7 @@ * * Created: H5dbg.c * Mar 4 2006 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Quincey Koziol * * Purpose: Generic debugging routines * @@ -70,7 +70,6 @@ * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu * Mar 4 2006 * *------------------------------------------------------------------------- diff --git a/src/H5timer.c b/src/H5timer.c index 8f3d305..cef7bf9 100644 --- a/src/H5timer.c +++ b/src/H5timer.c @@ -220,7 +220,8 @@ H5_now_usec(void) * * Purpose: Get the current time, as the time of seconds after the UNIX epoch * - * Return: SUCCEED/FAIL + * Return: Success: A non-negative time value + * Failure: -1.0 (in theory, can't currently fail) * * Programmer: Quincey Koziol * October 05, 2016 @@ -247,9 +248,9 @@ H5_get_time(void) HDgettimeofday(&now_tv, NULL); ret_value = (double)now_tv.tv_sec + ((double)now_tv.tv_usec / (double)1000000.0f); } -#else /* H5_HAVE_GETTIMEOFDAY */ +#else ret_value = (double)HDtime(NULL); -#endif /* H5_HAVE_GETTIMEOFDAY */ +#endif FUNC_LEAVE_NOAPI(ret_value) } /* end H5_get_time() */ @@ -279,9 +280,9 @@ H5__timer_get_timevals(H5_timevals_t *times /*in,out*/) /* Windows call handles both system/user and elapsed times */ #ifdef H5_HAVE_WIN32_API if(H5_get_win32_times(times) < 0) { - times->elapsed = -1; - times->system = -1; - times->user = -1; + times->elapsed = -1.0; + times->system = -1.0; + times->user = -1.0; return -1; } /* end if */ @@ -310,24 +311,8 @@ H5__timer_get_timevals(H5_timevals_t *times /*in,out*/) * Elapsed time * ****************/ - /* NOTE: Not having a way to get elapsed time IS an error, unlike - * the system and user times. - */ + times->elapsed = H5_get_time(); -#if defined(H5_HAVE_CLOCK_GETTIME) -{ - struct timespec ts; - - if(HDclock_gettime(CLOCK_MONOTONIC, &ts) != 0) - return -1; - times->elapsed = (double)ts.tv_sec + ((double)ts.tv_nsec / (double)1.0E9F); -} -#else - /* Die here. We'd like to know about this so we can support some - * other time functionality. - */ - HDassert(0); -#endif #endif /* H5_HAVE_WIN32_API */ return 0; diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt index 009a071..311d753 100644 --- a/test/CMakeLists.txt +++ b/test/CMakeLists.txt @@ -222,6 +222,7 @@ set (ttsafe_SOURCES ${HDF5_TEST_SOURCE_DIR}/ttsafe_error.c ${HDF5_TEST_SOURCE_DIR}/ttsafe_cancel.c ${HDF5_TEST_SOURCE_DIR}/ttsafe_acreate.c + ${HDF5_TEST_SOURCE_DIR}/ttsafe_attr_vlen.c ) set (H5_TESTS diff --git a/test/Makefile.am b/test/Makefile.am index e6ce954..7ebeae7 100644 --- a/test/Makefile.am +++ b/test/Makefile.am @@ -146,7 +146,7 @@ LDADD=libh5test.la $(LIBHDF5) # List the source files for tests that have more than one ttsafe_SOURCES=ttsafe.c ttsafe_dcreate.c ttsafe_error.c ttsafe_cancel.c \ - ttsafe_acreate.c + ttsafe_acreate.c ttsafe_attr_vlen.c cache_image_SOURCES=cache_image.c genall5.c mirror_vfd_SOURCES=mirror_vfd.c genall5.c diff --git a/test/trefer.c b/test/trefer.c index 12651c7..fd97239 100644 --- a/test/trefer.c +++ b/test/trefer.c @@ -23,6 +23,7 @@ #define FILE_REF_PARAM "trefer_param.h5" #define FILE_REF_OBJ "trefer_obj.h5" +#define FILE_REF_VL_OBJ "trefer_vl_obj.h5" #define FILE_REF_REG "trefer_reg.h5" #define FILE_REF_REG_1D "trefer_reg_1d.h5" #define FILE_REF_OBJ_DEL "trefer_obj_del.h5" @@ -538,6 +539,273 @@ test_reference_obj(void) /**************************************************************** ** +** test_reference_vlen_obj(): Test basic H5R (reference) object reference +** within a vlen type. +** Tests references to various kinds of objects +** +****************************************************************/ +static void +test_reference_vlen_obj(void) +{ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset, /* Dataset ID */ + dset2; /* Dereferenced dataset ID */ + hid_t group; /* Group ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Datatype ID */ + hsize_t dims1[] = {SPACE1_DIM1}; + hsize_t vl_dims[] = {1}; + hid_t dapl_id; /* Dataset access property list */ + H5R_ref_t *wbuf, /* buffer to write to disk */ + *rbuf; /* buffer read from disk */ + unsigned *ibuf, *obuf; + unsigned i, j; /* Counters */ + H5O_type_t obj_type; /* Object type */ + herr_t ret; /* Generic return value */ + hvl_t vl_wbuf = {0, NULL}, vl_rbuf = {0, NULL}; + + /* Output message about test being performed */ + MESSAGE(5, ("Testing Object Reference Functions within VLEN type\n")); + + /* Allocate write & read buffers */ + wbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); + rbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); + ibuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1); + obuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1); + + for (i = 0; i < SPACE1_DIM1; i++) + obuf[i] = i * 3; + + /* Create file */ + fid1 = H5Fcreate(FILE_REF_VL_OBJ, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + CHECK(fid1, H5I_INVALID_HID, "H5Fcreate"); + + /* Create dataspace for datasets */ + sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL); + CHECK(sid1, H5I_INVALID_HID, "H5Screate_simple"); + + /* Create dataset access property list */ + dapl_id = H5Pcreate(H5P_DATASET_ACCESS); + CHECK(dapl_id, H5I_INVALID_HID, "H5Pcreate"); + + /* Create a group */ + group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(group, H5I_INVALID_HID, "H5Gcreate2"); + + /* Create a dataset (inside Group1) */ + dataset = H5Dcreate2(group, "Dataset1", H5T_NATIVE_UINT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2"); + + /* Write selection to disk */ + ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obuf); + CHECK(ret, FAIL, "H5Dwrite"); + + /* Close Dataset */ + ret = H5Dclose(dataset); + CHECK(ret, FAIL, "H5Dclose"); + + /* Create another dataset (inside Group1) */ + dataset = H5Dcreate2(group, "Dataset2", H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(dataset, FAIL, "H5Dcreate2"); + + /* Close Dataset */ + ret = H5Dclose(dataset); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close disk dataspace */ + ret = H5Sclose(sid1); + CHECK(ret, FAIL, "H5Sclose"); + + /* Create a datatype to refer to */ + tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t)); + CHECK(tid1, H5I_INVALID_HID, "H5Tcreate"); + + /* Insert fields */ + ret = H5Tinsert(tid1, "a", HOFFSET(s1_t,a), H5T_NATIVE_INT); + CHECK(ret, FAIL, "H5Tinsert"); + + ret = H5Tinsert(tid1, "b", HOFFSET(s1_t,b), H5T_NATIVE_INT); + CHECK(ret, FAIL, "H5Tinsert"); + + ret = H5Tinsert(tid1, "c", HOFFSET(s1_t,c), H5T_NATIVE_FLOAT); + CHECK(ret, FAIL, "H5Tinsert"); + + /* Save datatype for later */ + ret = H5Tcommit2(group, "Datatype1", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Tcommit2"); + + /* Close datatype */ + ret = H5Tclose(tid1); + CHECK(ret, FAIL, "H5Tclose"); + + /* Close group */ + ret = H5Gclose(group); + CHECK(ret, FAIL, "H5Gclose"); + + /* Create vlen type */ + tid1 = H5Tvlen_create(H5T_STD_REF); + CHECK(tid1, H5I_INVALID_HID, "H5Tvlen_create"); + + /* Create dataspace for datasets */ + sid1 = H5Screate_simple(SPACE1_RANK, vl_dims, NULL); + CHECK(sid1, H5I_INVALID_HID, "H5Screate_simple"); + + /* Create a dataset */ + dataset = H5Dcreate2(fid1, "Dataset3", tid1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2"); + + /* Create reference to dataset */ + ret = H5Rcreate_object(fid1, "/Group1/Dataset1", H5P_DEFAULT, &wbuf[0]); + CHECK(ret, FAIL, "H5Rcreate_object"); + ret = H5Rget_obj_type3(&wbuf[0], H5P_DEFAULT, &obj_type); + CHECK(ret, FAIL, "H5Rget_obj_type3"); + VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); + + /* Create reference to dataset */ + ret = H5Rcreate_object(fid1, "/Group1/Dataset2", H5P_DEFAULT, &wbuf[1]); + CHECK(ret, FAIL, "H5Rcreate_object"); + ret = H5Rget_obj_type3(&wbuf[1], H5P_DEFAULT, &obj_type); + CHECK(ret, FAIL, "H5Rget_obj_type3"); + VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); + + /* Create reference to group */ + ret = H5Rcreate_object(fid1, "/Group1", H5P_DEFAULT, &wbuf[2]); + CHECK(ret, FAIL, "H5Rcreate_object"); + ret = H5Rget_obj_type3(&wbuf[2], H5P_DEFAULT, &obj_type); + CHECK(ret, FAIL, "H5Rget_obj_type3"); + VERIFY(obj_type, H5O_TYPE_GROUP, "H5Rget_obj_type3"); + + /* Create reference to named datatype */ + ret = H5Rcreate_object(fid1, "/Group1/Datatype1", H5P_DEFAULT, &wbuf[3]); + CHECK(ret, FAIL, "H5Rcreate_object"); + ret = H5Rget_obj_type3(&wbuf[3], H5P_DEFAULT, &obj_type); + CHECK(ret, FAIL, "H5Rget_obj_type3"); + VERIFY(obj_type, H5O_TYPE_NAMED_DATATYPE, "H5Rget_obj_type3"); + + /* Store references into vlen */ + vl_wbuf.len = SPACE1_DIM1; + vl_wbuf.p = wbuf; + + /* Write selection to disk */ + ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, &vl_wbuf); + CHECK(ret, FAIL, "H5Dwrite"); + + /* Close disk dataspace */ + ret = H5Sclose(sid1); + CHECK(ret, FAIL, "H5Sclose"); + + /* Close Dataset */ + ret = H5Dclose(dataset); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close datatype */ + ret = H5Tclose(tid1); + CHECK(ret, FAIL, "H5Tclose"); + + /* Close file */ + ret = H5Fclose(fid1); + CHECK(ret, FAIL, "H5Fclose"); + + /* Re-open the file */ + fid1 = H5Fopen(FILE_REF_VL_OBJ, H5F_ACC_RDWR, H5P_DEFAULT); + CHECK(fid1, H5I_INVALID_HID, "H5Fopen"); + + /* Open the dataset */ + dataset = H5Dopen2(fid1, "/Dataset3", H5P_DEFAULT); + CHECK(dataset, H5I_INVALID_HID, "H5Dopen2"); + + tid1 = H5Dget_type(dataset); + CHECK(tid1, H5I_INVALID_HID, "H5Dget_type"); + + /* Read selection from disk */ + ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, &vl_rbuf); + CHECK(ret, FAIL, "H5Dread"); + + VERIFY(vl_rbuf.len, SPACE1_DIM1, "H5Dread"); + rbuf = vl_rbuf.p; + + /* Close datatype */ + ret = H5Tclose(tid1); + CHECK(ret, FAIL, "H5Tclose"); + + /* Open dataset object */ + dset2 = H5Ropen_object(&rbuf[0], H5P_DEFAULT, dapl_id); + CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object"); + + /* Check information in referenced dataset */ + sid1 = H5Dget_space(dset2); + CHECK(sid1, H5I_INVALID_HID, "H5Dget_space"); + + ret = (int)H5Sget_simple_extent_npoints(sid1); + VERIFY(ret, SPACE1_DIM1, "H5Sget_simple_extent_npoints"); + + /* Read from disk */ + ret = H5Dread(dset2, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, ibuf); + CHECK(ret, FAIL, "H5Dread"); + + for(i = 0; i < SPACE1_DIM1; i++) + VERIFY(ibuf[i], i * 3, "Data"); + + /* Close dereferenced Dataset */ + ret = H5Dclose(dset2); + CHECK(ret, FAIL, "H5Dclose"); + + /* Open group object. GAPL isn't supported yet. But it's harmless to pass in */ + group = H5Ropen_object(&rbuf[2], H5P_DEFAULT, H5P_DEFAULT); + CHECK(group, H5I_INVALID_HID, "H5Ropen_object"); + + /* Close group */ + ret = H5Gclose(group); + CHECK(ret, FAIL, "H5Gclose"); + + /* Open datatype object. TAPL isn't supported yet. But it's harmless to pass in */ + tid1 = H5Ropen_object(&rbuf[3], H5P_DEFAULT, H5P_DEFAULT); + CHECK(tid1, H5I_INVALID_HID, "H5Ropen_object"); + + /* Verify correct datatype */ + { + H5T_class_t tclass; + + tclass = H5Tget_class(tid1); + VERIFY(tclass, H5T_COMPOUND, "H5Tget_class"); + + ret= H5Tget_nmembers(tid1); + VERIFY(ret, 3, "H5Tget_nmembers"); + } + + /* Close datatype */ + ret = H5Tclose(tid1); + CHECK(ret, FAIL, "H5Tclose"); + + /* Close Dataset */ + ret = H5Dclose(dataset); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close dataset access property list */ + ret = H5Pclose(dapl_id); + CHECK(ret, FAIL, "H5Pclose"); + + /* Close file */ + ret = H5Fclose(fid1); + CHECK(ret, FAIL, "H5Fclose"); + + /* Destroy references */ + for(j = 0; j < SPACE1_DIM1; j++) { + ret = H5Rdestroy(&wbuf[j]); + CHECK(ret, FAIL, "H5Rdestroy"); + ret = H5Rdestroy(&rbuf[j]); + CHECK(ret, FAIL, "H5Rdestroy"); + } + + /* Free memory buffers */ + HDfree(wbuf); + HDfree(rbuf); + HDfree(ibuf); + HDfree(obuf); +} /* test_reference_vlen_obj() */ + +/**************************************************************** +** ** test_reference_region(): Test basic H5R (reference) object reference code. ** Tests references to various kinds of objects ** @@ -2862,6 +3130,7 @@ test_reference(void) test_reference_params(); /* Test for correct parameter checking */ test_reference_obj(); /* Test basic H5R object reference code */ + test_reference_vlen_obj(); /* Test reference within vlen */ /* Loop through all the combinations of low/high version bounds */ for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { @@ -2907,6 +3176,7 @@ cleanup_reference(void) { HDremove(FILE_REF_PARAM); HDremove(FILE_REF_OBJ); + HDremove(FILE_REF_VL_OBJ); HDremove(FILE_REF_REG); HDremove(FILE_REF_REG_1D); HDremove(FILE_REF_OBJ_DEL); diff --git a/test/tselect.c b/test/tselect.c index aa0ab11..c98db5d 100644 --- a/test/tselect.c +++ b/test/tselect.c @@ -15442,14 +15442,14 @@ test_hyper_io_1d(void) /* Get the dataset's dataspace */ sid = H5Dget_space(did); - CHECK(sid, H5I_INVALID_HID, "H5Pcreate"); + CHECK(sid, H5I_INVALID_HID, "H5Dget_space"); ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, offset, stride, count, block); CHECK(ret, FAIL, "H5Sselect_hyperslab"); /* Set up contiguous memory dataspace for the selected elements */ dimsm[0] = count[0]; mid = H5Screate_simple(RANK, dimsm, NULL); - CHECK(mid, H5I_INVALID_HID, "H5Screate"); + CHECK(mid, H5I_INVALID_HID, "H5Screate_simple"); /* Read all the selected 10th elements in the dataset into "rdata" */ ret = H5Dread(did, H5T_NATIVE_INT, mid, sid, H5P_DEFAULT, rdata); @@ -15476,6 +15476,77 @@ test_hyper_io_1d(void) /**************************************************************** ** +** test_h5s_set_extent_none: +** Test to verify the behavior of dataspace code when passed +** a dataspace modified by H5Sset_extent_none(). +** +****************************************************************/ +static void +test_h5s_set_extent_none(void) +{ + hid_t sid = H5I_INVALID_HID; + hid_t dst_sid = H5I_INVALID_HID; + hid_t null_sid = H5I_INVALID_HID; + int rank = 1; + hsize_t current_dims = 123; + H5S_class_t cls; + int out_rank; + hsize_t out_dims; + hsize_t out_maxdims; + hssize_t out_points; + htri_t equal; + herr_t ret; + + /* Specific values here don't matter as we're just going to reset */ + sid = H5Screate_simple(rank, ¤t_dims, NULL); + CHECK(sid, H5I_INVALID_HID, "H5Screate_simple"); + + /* Dataspace class will be H5S_NULL after this. + * In versions prior to 1.10.7 / 1.12.1 this would produce a + * dataspace with the internal H5S_NO_CLASS class. + */ + ret = H5Sset_extent_none(sid); + CHECK(ret, FAIL, "H5Sset_extent_none"); + cls = H5Sget_simple_extent_type(sid); + VERIFY(cls, H5S_NULL, "H5Sget_simple_extent_type"); + + /* Extent getters should generate normal results and not segfault. + */ + out_rank = H5Sget_simple_extent_dims(sid, &out_dims, &out_maxdims); + VERIFY(out_rank, 0, "H5Sget_simple_extent_dims"); + out_rank = H5Sget_simple_extent_ndims(sid); + VERIFY(out_rank, 0, "H5Sget_simple_extent_ndims"); + out_points = H5Sget_simple_extent_npoints(sid); + VERIFY(out_points, 0, "H5Sget_simple_extent_npoints"); + + /* Check that copying the new (non-)extent works. + */ + dst_sid = H5Screate_simple(rank, ¤t_dims, NULL); + CHECK(dst_sid, H5I_INVALID_HID, "H5Screate_simple"); + ret = H5Sextent_copy(dst_sid, sid); + CHECK(ret, FAIL, "H5Sextent_copy"); + + /* Check that H5Sset_extent_none() produces the same extent as + * H5Screate(H5S_NULL). + */ + null_sid = H5Screate(H5S_NULL); + CHECK(null_sid, H5I_INVALID_HID, "H5Screate"); + equal = H5Sextent_equal(sid, null_sid); + VERIFY(equal, TRUE, "H5Sextent_equal"); + + /* Close */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Sclose(dst_sid); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Sclose(null_sid); + CHECK(ret, FAIL, "H5Sclose"); + +} /* test_h5s_set_extent_none() */ + + +/**************************************************************** +** ** test_select(): Main H5S selection testing routine. ** ****************************************************************/ @@ -15660,6 +15731,11 @@ test_select(void) /* Test reading of 1-d disjoint file space to 1-d single block memory space */ test_hyper_io_1d(); + /* Test H5Sset_extent_none() functionality after we updated it to set + * the class to H5S_NULL instead of H5S_NO_CLASS. + */ + test_h5s_set_extent_none(); + } /* test_select() */ diff --git a/test/ttsafe.c b/test/ttsafe.c index e6edd9a..2de460b 100644 --- a/test/ttsafe.c +++ b/test/ttsafe.c @@ -111,6 +111,7 @@ int main(int argc, char *argv[]) AddTest("cancel", tts_cancel, cleanup_cancel, "thread cancellation safety test", NULL); #endif /* H5_HAVE_PTHREAD_H */ AddTest("acreate", tts_acreate, cleanup_acreate, "multi-attribute creation", NULL); + AddTest("attr_vlen", tts_attr_vlen, cleanup_attr_vlen, "multi-file-attribute-vlen read", NULL); #else /* H5_HAVE_THREADSAFE */ diff --git a/test/ttsafe.h b/test/ttsafe.h index c29fadc..f1cbe4d 100644 --- a/test/ttsafe.h +++ b/test/ttsafe.h @@ -35,12 +35,14 @@ void tts_dcreate(void); void tts_error(void); void tts_cancel(void); void tts_acreate(void); +void tts_attr_vlen(void); /* Prototypes for the cleanup routines */ void cleanup_dcreate(void); void cleanup_error(void); void cleanup_cancel(void); void cleanup_acreate(void); +void cleanup_attr_vlen(void); #endif /* H5_HAVE_THREADSAFE */ #endif /* TTSAFE_H */ diff --git a/test/ttsafe_attr_vlen.c b/test/ttsafe_attr_vlen.c new file mode 100644 index 0000000..b07e362 --- /dev/null +++ b/test/ttsafe_attr_vlen.c @@ -0,0 +1,176 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/******************************************************************** + * + * Testing for thread safety in H5A library operations. + * ------------------------------------------------------------------ + * + * Purpose: Verify that the segmentation fault described in HDFFV-11080 + * is fixed. + * + * This test simulates what the user did to trigger the error: + * --Create an HDF5 file + * --Create an attribute with variable length string datatype + * --Attach the attribute to a group + * --Write data to the attribute + * --Close the file + * --Create NUM_THREADS threads + * --For each thread: + * --Open the test file + * --Open and read the attribute for each opened file + * + * The cause of the problem in this jira issue is due to the file pointer + * that is set in the variable length string datatype for the attribute. + * That file pointer is already closed and therefore needs to be set to + * the current opened file pointer when the attribute is accessed. + * Similar patch up was done before when reading dataset in H5D__read() + * in src/H5Aint.c. + * Hopefully this kind of patch can go away when we resolve the + * shared file pointer issue. + * + ********************************************************************/ + +#include "ttsafe.h" + +#ifdef H5_HAVE_THREADSAFE + +#define FILENAME "ttsafe_attr_vlen.h5" +#define ATTR_NAME "root_attr" +#define NUM_THREADS 32 + +void *tts_attr_vlen_thread(void *); + +void +tts_attr_vlen(void) +{ + pthread_t threads[NUM_THREADS] = {0}; /* Thread declaration */ + hid_t fid = H5I_INVALID_HID; /* File ID */ + hid_t gid = H5I_INVALID_HID; /* Group ID */ + hid_t atid = H5I_INVALID_HID; /* Datatype ID for attribute */ + hid_t asid = H5I_INVALID_HID; /* Dataspace ID for attribute */ + hid_t aid = H5I_INVALID_HID; /* The attribute ID */ + char *string_attr = "2.0"; /* The attribute data */ + int ret; /* Return value */ + int i; /* Local index variable */ + + /* Create the HDF5 test file */ + fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + CHECK(fid, H5I_INVALID_HID, "H5Fcreate"); + + /* Create variable length string type for attribute */ + atid = H5Tcopy(H5T_C_S1); + CHECK(atid, H5I_INVALID_HID, "H5Tcopy"); + H5Tset_size(atid, H5T_VARIABLE); + + /* Create dataspace for attribute */ + asid = H5Screate(H5S_SCALAR); + CHECK(asid, H5I_INVALID_HID, "H5Screate"); + + /* Open the root group */ + gid = H5Gopen2(fid, "/", H5P_DEFAULT); + CHECK(gid, H5I_INVALID_HID, "H5Gopen2"); + + /* Attach the attribute to the root group */ + aid = H5Acreate2(gid, ATTR_NAME, atid, asid, H5P_DEFAULT, H5P_DEFAULT); + CHECK(aid, H5I_INVALID_HID, "H5Acreate2"); + + /* Write data to the attribute */ + ret = H5Awrite(aid, atid, &string_attr); + CHECK(ret, H5I_INVALID_HID, "H5Awrite"); + + /* Close IDs */ + ret = H5Sclose(asid); + CHECK(ret, H5I_INVALID_HID, "H5Sclose"); + + ret = H5Aclose(aid); + CHECK(ret, H5I_INVALID_HID, "H5Aclose"); + + ret = H5Gclose(gid); + CHECK(ret, H5I_INVALID_HID, "H5Gclose"); + + ret = H5Fclose(fid); + CHECK(ret, H5I_INVALID_HID, "H5Fclose"); + + ret = H5Tclose(atid); + CHECK(ret, H5I_INVALID_HID, "H5Tclose"); + + /* Start multiple threads and execute tts_attr_vlen_thread() for each thread */ + for(i = 0; i < NUM_THREADS; i++) + pthread_create(&threads[i], NULL, tts_attr_vlen_thread, NULL); + + /* Wait for the threads to end */ + for(i = 0; i < NUM_THREADS; i++) + pthread_join(threads[i], NULL); + +} /* end tts_attr_vlen() */ + +/* Start execution for each thread */ +void * +tts_attr_vlen_thread(void *client_data) +{ + hid_t fid = H5I_INVALID_HID; /* File ID */ + hid_t gid = H5I_INVALID_HID; /* Group ID */ + hid_t aid = H5I_INVALID_HID; /* Attribute ID */ + hid_t atid = H5I_INVALID_HID; /* Datatype ID for the attribute */ + char *string_attr_check; /* The attribute data being read */ + char *string_attr = "2.0"; /* The expected attribute data */ + herr_t ret; /* Return value */ + + /* Open the test file */ + fid = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT); + CHECK(fid, H5I_INVALID_HID, "H5Fopen"); + + /* Open the group */ + gid = H5Gopen2(fid, "/", H5P_DEFAULT); + CHECK(gid, H5I_INVALID_HID, "H5Gopen"); + + /* Open the attribte */ + aid = H5Aopen(gid, "root_attr", H5P_DEFAULT); + CHECK(aid, H5I_INVALID_HID, "H5Aopen"); + + /* Get the attribute datatype */ + atid = H5Aget_type(aid); + CHECK(atid, H5I_INVALID_HID, "H5Aget_type"); + + /* Read the attribute */ + ret = H5Aread(aid, atid, &string_attr_check); + CHECK(ret, FAIL, "H5Aclose"); + + /* Verify the attribute data is as expected */ + VERIFY_STR(string_attr_check, string_attr, "H5Aread"); + + /* Close IDs */ + ret = H5Aclose(aid); + CHECK(ret, FAIL, "H5Aclose"); + + ret = H5Gclose(gid); + CHECK(ret, FAIL, "H5Aclose"); + + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Aclose"); + + ret = H5Tclose(atid); + CHECK(ret, FAIL, "H5Aclose"); + + return NULL; +} /* end tts_attr_vlen_thread() */ + +void +cleanup_attr_vlen(void) +{ + HDunlink(FILENAME); +} + +#endif /*H5_HAVE_THREADSAFE*/ + diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index 8b6ace9..87a3b11 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -29,7 +29,7 @@ H5_ATTR_PURE int print_objname (diff_opt_t * opts, hsize_t nfound) { - return ((opts->m_verbose || nfound) && !opts->m_quiet) ? 1 : 0; + return ((opts->mode_verbose || nfound) && !opts->mode_quiet) ? 1 : 0; } /*------------------------------------------------------------------------- @@ -45,7 +45,7 @@ do_print_objname (const char *OBJ, const char *path1, const char *path2, diff_op * displaying any object or symbolic links. This improves * readability of the output. */ - if (opts->m_verbose_level >= 1) + if (opts->mode_verbose_level >= 1) parallel_print("\n"); parallel_print("%-7s: <%s> and <%s>\n", OBJ, path1, path2); } @@ -74,7 +74,7 @@ do_print_attrname (const char *attr, const char *path1, const char *path2) static int print_warn(diff_opt_t *opts) { - return ((opts->m_verbose)) ? 1: 0; + return ((opts->mode_verbose)) ? 1: 0; } @@ -141,7 +141,7 @@ is_valid_options(diff_opt_t *opts) /*----------------------------------------------- * no -q(quiet) with -v (verbose) or -r (report) */ - if(opts->m_quiet && (opts->m_verbose || opts->m_report)) { + if(opts->mode_quiet && (opts->mode_verbose || opts->mode_report)) { parallel_print("Error: -q (quiet mode) cannot be added to verbose or report modes\n"); opts->err_stat = H5DIFF_ERR; H5TOOLS_GOTO_DONE(0); @@ -169,9 +169,9 @@ done: * 0 - not excluded path *------------------------------------------------------------------------*/ static int -is_exclude_path (char * path, h5trav_type_t type, diff_opt_t *opts) +is_exclude_path (char *path, h5trav_type_t type, diff_opt_t *opts) { - struct exclude_path_list * exclude_path_ptr; + struct exclude_path_list *exclude_path_ptr; int ret_cmp; int ret_value = 0; @@ -210,7 +210,7 @@ is_exclude_path (char * path, h5trav_type_t type, diff_opt_t *opts) if (ret_cmp == 0) { /* found matching object */ /* excluded non-group object */ ret_value = 1; - /* remember the type of this maching object. + /* remember the type of this matching object. * if it's group, it can be used for excluding its member * objects in this while() loop */ exclude_path_ptr->obj_type = type; @@ -224,6 +224,71 @@ done: return ret_value; } +/*------------------------------------------------------------------------- + * Function: is_exclude_attr + * + * Purpose: check if 'paths' are part of exclude path list + * + * Return: + * 1 - excluded path + * 0 - not excluded path + *------------------------------------------------------------------------*/ +static int +is_exclude_attr (const char *path, h5trav_type_t type, diff_opt_t *opts) +{ + struct exclude_path_list *exclude_ptr; + int ret_cmp; + int ret_value = 0; + + /* check if exclude attr option is given */ + if (!opts->exclude_attr_path) + H5TOOLS_GOTO_DONE(0); + + /* assign to local exclude list pointer */ + exclude_ptr = opts->exclude_attr; + + /* search objects in exclude list */ + while (NULL != exclude_ptr) { + /* if exclude path is is group, exclude its members as well */ + if (exclude_ptr->obj_type == H5TRAV_TYPE_GROUP) { + ret_cmp = HDstrncmp(exclude_ptr->obj_path, path, + HDstrlen(exclude_ptr->obj_path)); + if (ret_cmp == 0) { /* found matching members */ + size_t len_grp; + + /* check if given path belong to an excluding group, if so + * exclude it as well. + * This verifies if “/grp1/dset1” is only under “/grp1”, but + * not under “/grp1xxx/” group. + */ + len_grp = HDstrlen(exclude_ptr->obj_path); + if (path[len_grp] == '/') { + /* belong to excluded group! */ + ret_value = 1; + break; /* while */ + } + } + } + /* exclude target is not group, just exclude the object */ + else { + ret_cmp = HDstrcmp(exclude_ptr->obj_path, path); + if (ret_cmp == 0) { /* found matching object */ + /* excluded non-group object */ + ret_value = 1; + /* remember the type of this matching object. + * if it's group, it can be used for excluding its member + * objects in this while() loop */ + exclude_ptr->obj_type = type; + break; /* while */ + } + } + exclude_ptr = exclude_ptr->next; + } + +done: + return ret_value; +} + /*------------------------------------------------------------------------- * Function: free_exclude_path_list @@ -243,6 +308,25 @@ free_exclude_path_list(diff_opt_t *opts) } } + +/*------------------------------------------------------------------------- + * Function: free_exclude_attr_list + * + * Purpose: free exclude object attribute list from diff options + *------------------------------------------------------------------------*/ +static void +free_exclude_attr_list(diff_opt_t *opts) +{ + struct exclude_path_list *curr = opts->exclude_attr; + struct exclude_path_list *next; + + while (NULL != curr) { + next = curr->next; + HDfree(curr); + curr = next; + } +} + /*------------------------------------------------------------------------- * Function: build_match_list * @@ -288,6 +372,7 @@ build_match_list (const char *objname1, trav_info_t *info1, const char *objname2 * All the objects belong to given groups are the candidates. * So prepare to compare paths without the group names. */ + H5TOOLS_DEBUG("objname1 = %s objname2 = %s ", objname1, objname2); /* if obj1 is not root */ if (HDstrcmp (objname1,"/") != 0) @@ -572,8 +657,8 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char *------------------------------------------------------------------------- */ /* open file 1 */ - if (opts->custom_vol_1) { - if((fapl1_id = h5tools_get_fapl(H5P_DEFAULT, &(opts->vol_info_1), NULL)) < 0 ) { + if (opts->custom_vol[0]) { + if((fapl1_id = h5tools_get_fapl(H5P_DEFAULT, &(opts->vol_info[0]), NULL)) < 0 ) { parallel_print("h5diff: unable to create fapl for input file\n"); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "unable to create input fapl\n"); } @@ -587,8 +672,8 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char /* open file 2 */ - if (opts->custom_vol_2) { - if((fapl2_id = h5tools_get_fapl(H5P_DEFAULT, &(opts->vol_info_2), NULL)) < 0 ) { + if (opts->custom_vol[1]) { + if((fapl2_id = h5tools_get_fapl(H5P_DEFAULT, &(opts->vol_info[1]), NULL)) < 0 ) { parallel_print("h5diff: unable to create fapl for output file\n"); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "unable to create output fapl\n"); } @@ -627,6 +712,7 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char } else obj1fullname = HDstrdup(objname1); + H5TOOLS_DEBUG("obj1fullname = %s", obj1fullname); /* make the given object2 fullpath, start with "/" */ if (HDstrncmp(objname2, "/", 1)) { @@ -644,6 +730,7 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char } else obj2fullname = HDstrdup(objname2); + H5TOOLS_DEBUG("obj2fullname = %s", obj2fullname); /*---------------------------------------------------------- * check if obj1 is root, group, single object or symlink @@ -777,12 +864,12 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char H5TOOLS_DEBUG("h5diff ... dangling link"); if (opts->no_dangle_links) { /* treat dangling link as error */ - if(opts->m_verbose) + if(opts->mode_verbose) parallel_print("Warning: <%s> is a dangling link.\n", obj1fullname); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "treat dangling link as error"); } else { - if(opts->m_verbose) + if(opts->mode_verbose) parallel_print("obj1 <%s> is a dangling link.\n", obj1fullname); if (l_ret1 != 0 || l_ret2 != 0) { nfound++; @@ -818,12 +905,12 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char H5TOOLS_DEBUG("h5diff ... dangling link"); if (opts->no_dangle_links) { /* treat dangling link as error */ - if(opts->m_verbose) + if(opts->mode_verbose) parallel_print("Warning: <%s> is a dangling link.\n", obj2fullname); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "treat dangling link as error"); } else { - if(opts->m_verbose) + if(opts->mode_verbose) parallel_print("obj2 <%s> is a dangling link.\n", obj2fullname); if (l_ret1 != 0 || l_ret2 != 0) { nfound++; @@ -857,8 +944,8 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char * comparing details of same objects. */ - if(!(opts->m_verbose || opts->m_report)) { - H5TOOLS_DEBUG("h5diff NOT (opts->m_verbose || opts->m_report)"); + if(!(opts->mode_verbose || opts->mode_report)) { + H5TOOLS_DEBUG("h5diff NOT (opts->mode_verbose || opts->mode_report)"); /* if no danglink links */ if (l_ret1 > 0 && l_ret2 > 0) if (h5tools_is_obj_same(file1_id, obj1fullname, file2_id, obj2fullname) != 0) @@ -924,9 +1011,14 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char /*------------------------------------------------------ * print the list */ - if(opts->m_verbose) { + if(opts->mode_verbose) { unsigned u; + if(opts->mode_verbose_level > 2) { + parallel_print("file1: %s\n", fname1); + parallel_print("file2: %s\n", fname2); + } + parallel_print("\n"); /* if given objects is group under root */ if (HDstrcmp (obj1fullname,"/") || HDstrcmp (obj2fullname,"/")) @@ -947,6 +1039,7 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char nfound = diff_match(file1_id, obj1fullname, info1_lp, file2_id, obj2fullname, info2_lp, match_list, opts); + H5TOOLS_DEBUG("diff_match nfound: %d - errstat:%d", nfound, opts->err_stat); done: opts->err_stat = opts->err_stat | ret_value; @@ -1047,12 +1140,14 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, *------------------------------------------------------------------------- */ + H5TOOLS_DEBUG("exclude_path opts->contents:%d", opts->contents); /* not valid compare used when --exclude-path option is used */ if (!opts->exclude_path) { /* number of different objects */ if (info1->nused != info2->nused) { opts->contents = 0; } + H5TOOLS_DEBUG("opts->exclude_path opts->contents:%d", opts->contents); } /* objects in one file and not the other */ @@ -1061,6 +1156,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, opts->contents = 0; break; } + H5TOOLS_DEBUG("table->nobjs[%d] opts->contents:%d", i, opts->contents); } /*------------------------------------------------------------------------- @@ -1133,9 +1229,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, opts->cmn_objs = 1; if(!g_Parallel) { H5TOOLS_DEBUG("diff paths - errstat:%d", opts->err_stat); - nfound += diff(file1_id, obj1_fullpath, - file2_id, obj2_fullpath, - opts, &argdata); + nfound += diff(file1_id, obj1_fullpath, file2_id, obj2_fullpath, opts, &argdata); } /* end if */ #ifdef H5_HAVE_PARALLEL else { @@ -1380,6 +1474,8 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, opts->err_stat = opts->err_stat | ret_value; + free_exclude_attr_list (opts); + /* free table */ if (table) trav_table_free(table); @@ -1404,7 +1500,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, *------------------------------------------------------------------------- */ hsize_t -diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_opt_t * opts, diff_args_t *argdata) +diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_opt_t *opts, diff_args_t *argdata) { int status = -1; hid_t dset1_id = H5I_INVALID_HID; @@ -1453,7 +1549,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ if (status == 0) { if (opts->no_dangle_links) { /* dangling link is error */ - if(opts->m_verbose) + if(opts->mode_verbose) parallel_print("Warning: <%s> is a dangling link.\n", path1); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "dangling link is error"); } @@ -1468,7 +1564,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ if (status == 0) { if (opts->no_dangle_links) { /* dangling link is error */ - if(opts->m_verbose) + if(opts->mode_verbose) parallel_print("Warning: <%s> is a dangling link.\n", path2); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "dangling link is error"); } @@ -1494,11 +1590,11 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ /* if objects are not the same type */ if (argdata->type[0] != argdata->type[1]) { H5TOOLS_DEBUG("diff objects are not the same"); - if (opts->m_verbose||opts->m_list_not_cmp) { + if (opts->mode_verbose||opts->mode_list_not_cmp) { parallel_print("Not comparable: <%s> is of type %s and <%s> is of type %s\n", - path1, get_type(argdata->type[0]), - path2, get_type(argdata->type[1])); + path1, get_type(argdata->type[0]), path2, get_type(argdata->type[1])); } + opts->not_cmp = 1; /* TODO: will need to update non-comparable is different * opts->contents = 0; @@ -1523,7 +1619,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ object_type == H5TRAV_TYPE_GROUP); if (opts->follow_links || is_hard_link) { /* print information is only verbose option is used */ - if(opts->m_verbose || opts->m_report) { + if(opts->mode_verbose || opts->mode_report) { switch(object_type) { case H5TRAV_TYPE_DATASET: do_print_objname("dataset", path1, path2, opts); @@ -1552,7 +1648,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ } /* switch(type)*/ print_found(nfound); - } /* if(opts->m_verbose || opts->m_report) */ + } /* if(opts->mode_verbose || opts->mode_report) */ /* exact same, so comparison is done */ H5TOOLS_GOTO_DONE(H5DIFF_NO_ERR); @@ -1570,15 +1666,16 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dopen2 failed"); if((dset2_id = H5Dopen2(file2_id, path2, H5P_DEFAULT)) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dopen2 failed"); + H5TOOLS_DEBUG("paths: %s - %s", path1, path2); /* verbose (-v) and report (-r) mode */ - if(opts->m_verbose || opts->m_report) { + if(opts->mode_verbose || opts->mode_report) { do_print_objname("dataset", path1, path2, opts); H5TOOLS_DEBUG("call diff_dataset 1:%s 2:%s ", path1, path2); nfound = diff_dataset(file1_id, file2_id, path1, path2, opts); print_found(nfound); } /* quiet mode (-q), just count differences */ - else if(opts->m_quiet) { + else if(opts->mode_quiet) { nfound = diff_dataset(file1_id, file2_id, path1, path2, opts); } /* the rest (-c, none, ...) */ @@ -1598,7 +1695,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ * referenced object *--------------------------------------------------------- */ - if(path1) { + if(path1 && !is_exclude_attr(path1, object_type, opts)) { H5TOOLS_DEBUG( "call diff_attr 1:%s 2:%s ", path1, path2); nfound += diff_attr(dset1_id, dset2_id, path1, path2, opts); } @@ -1630,7 +1727,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ do_print_objname("datatype", path1, path2, opts); /* always print the number of differences found in verbose mode */ - if(opts->m_verbose) + if(opts->mode_verbose) print_found(nfound); /*----------------------------------------------------------------- @@ -1639,7 +1736,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ * referenced object *----------------------------------------------------------------- */ - if(path1) { + if(path1 && !is_exclude_attr(path1, object_type, opts)) { H5TOOLS_DEBUG("call diff_attr 1:%s 2:%s ", path1, path2); nfound += diff_attr(type1_id, type2_id, path1, path2, opts); } @@ -1660,7 +1757,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ do_print_objname("group", path1, path2, opts); /* always print the number of differences found in verbose mode */ - if(opts->m_verbose) + if(opts->mode_verbose) print_found(nfound); if((grp1_id = H5Gopen2(file1_id, path1, H5P_DEFAULT)) < 0) @@ -1674,7 +1771,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ * referenced object *----------------------------------------------------------------- */ - if(path1) { + if(path1 && !is_exclude_attr(path1, object_type, opts)) { H5TOOLS_DEBUG("call diff_attr 1:%s 2:%s ", path1, path2); nfound += diff_attr(grp1_id, grp2_id, path1, path2, opts); } @@ -1702,7 +1799,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ do_print_objname("link", path1, path2, opts); /* always print the number of differences found in verbose mode */ - if(opts->m_verbose) + if(opts->mode_verbose) print_found(nfound); } break; @@ -1752,14 +1849,14 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_ } /* end else */ /* always print the number of differences found in verbose mode */ - if(opts->m_verbose) + if(opts->mode_verbose) print_found(nfound); } break; case H5TRAV_TYPE_UNKNOWN: default: - if(opts->m_verbose) + if(opts->mode_verbose) parallel_print("Comparison not supported: <%s> and <%s> are of type %s\n", path1, path2, get_type(object_type) ); opts->not_cmp = 1; @@ -1781,7 +1878,7 @@ done: } /* path1 is dangling link */ else if (is_dangle_link1) { - if(opts->m_verbose) + if(opts->mode_verbose) parallel_print("obj1 <%s> is a dangling link.\n", path1); nfound++; if(print_objname(opts, nfound)) @@ -1789,7 +1886,7 @@ done: } /* path2 is dangling link */ else if (is_dangle_link2) { - if(opts->m_verbose) + if(opts->mode_verbose) parallel_print("obj2 <%s> is a dangling link.\n", path2); nfound++; if(print_objname(opts, nfound)) diff --git a/tools/lib/h5diff.h b/tools/lib/h5diff.h index 37eb775..f44f653 100644 --- a/tools/lib/h5diff.h +++ b/tools/lib/h5diff.h @@ -18,23 +18,6 @@ #include "h5tools.h" #include "h5trav.h" -/* - * Debug printf macros. The prefix allows output filtering by test scripts. - */ -#ifdef H5DIFF_DEBUG -#define h5difftrace(x) HDfprintf(stderr, "h5diff debug: " x) -#define h5diffdebug2(x1, x2) HDfprintf(stderr, "h5diff debug: " x1, x2) -#define h5diffdebug3(x1, x2, x3) HDfprintf(stderr, "h5diff debug: " x1, x2, x3) -#define h5diffdebug4(x1, x2, x3, x4) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4) -#define h5diffdebug5(x1, x2, x3, x4, x5) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4, x5) -#else -#define h5difftrace(x) -#define h5diffdebug2(x1, x2) -#define h5diffdebug3(x1, x2, x3) -#define h5diffdebug4(x1, x2, x3, x4) -#define h5diffdebug5(x1, x2, x3, x4, x5) -#endif - #define MAX_FILENAME 1024 /*------------------------------------------------------------------------- @@ -58,6 +41,7 @@ struct exclude_path_list { struct exclude_path_list *next; }; + /* Enumeration value for keeping track of whether an error occurred or differences were found */ typedef enum { H5DIFF_NO_ERR, /* No error occurred */ @@ -66,31 +50,47 @@ typedef enum { } diff_err_t; typedef struct { - int m_quiet; /* quiet mode: no output at all */ - int m_report; /* report mode: print the data */ - int m_verbose; /* verbose mode: print the data, list of objcets, warnings */ - int m_verbose_level; /* control verbose details */ - int d; /* delta, absolute value to compare */ - double delta; /* delta value */ - int p; /* relative error to compare*/ - int use_system_epsilon; /* flag to use system epsilon (1 or 0) */ - double percent; /* relative error value */ - int n; /* count, compare up to count */ - hsize_t count; /* count value */ - hbool_t follow_links; /* follow symbolic links */ - int no_dangle_links; /* return error when find dangling link */ - diff_err_t err_stat; /* an error ocurred (2, error, 1, differences, 0, no error) */ - int cmn_objs; /* do we have common objects */ - int not_cmp; /* are the objects comparable */ - int contents; /* equal contents */ - int do_nans; /* consider Nans while diffing floats */ - int m_list_not_cmp; /* list not comparable messages */ - int exclude_path; /* exclude path to an object */ - struct exclude_path_list * exclude; /* keep exclude path list */ - h5tools_vol_info_t vol_info_1; /* VOL information for input file */ - h5tools_vol_info_t vol_info_2; /* VOL information for output file */ - hbool_t custom_vol_1; /* Using a custom input VOL? */ - hbool_t custom_vol_2; /* Using a custom output VOL? */ + int mode_quiet; /* quiet mode: no output at all */ + int mode_report; /* report mode: print the data */ + int mode_verbose; /* verbose mode: print the data, list of objcets, warnings */ + int mode_verbose_level; /* control verbose details */ + int mode_list_not_cmp; /* list not comparable messages */ + int print_header; /* print header */ + int print_percentage; /* print percentage */ + int print_dims; /* print dimension index */ + int delta_bool; /* delta, absolute value to compare */ + double delta; /* delta value */ + int use_system_epsilon; /* flag to use system epsilon (1 or 0) */ + int percent_bool; /* relative error to compare*/ + double percent; /* relative error value */ + hbool_t follow_links; /* follow symbolic links */ + int no_dangle_links; /* return error when find dangling link */ + int cmn_objs; /* do we have common objects */ + int not_cmp; /* are the objects comparable */ + int contents; /* equal contents */ + int do_nans; /* consider Nans while diffing floats */ + int exclude_path; /* exclude path to an object */ + int exclude_attr_path; /* exclude path to an object */ + struct exclude_path_list *exclude; /* keep exclude path list */ + struct exclude_path_list *exclude_attr; /* keep exclude attribute list */ + int count_bool; /* count, compare up to count */ + hsize_t count; /* count value */ + diff_err_t err_stat; /* an error ocurred (2, error, 1, differences, 0, no error) */ + hsize_t nelmts; /* total number of elements */ + hsize_t hs_nelmts; /* number of elements to read at a time*/ + int rank; /* dimensionality */ + size_t m_size; /* m_size for diff */ + hid_t m_tid; /* m_tid for diff */ + hsize_t dims[H5S_MAX_RANK]; /* dimensions of object */ + hsize_t p_min_idx[H5S_MAX_RANK]; /* min selected index */ + hsize_t p_max_idx[H5S_MAX_RANK]; /* max selected index */ + hsize_t acc[H5S_MAX_RANK]; /* accumulator position */ + hsize_t pos[H5S_MAX_RANK]; /* matrix position */ + hsize_t sm_pos[H5S_MAX_RANK]; /* stripmine position */ + char *obj_name[2]; /* name for object */ + struct subset_t *sset[2]; /* subsetting parameters */ + h5tools_vol_info_t vol_info[2]; /* VOL information for input file, output file */ + hbool_t custom_vol[2]; /* Using a custom input, output VOL? */ } diff_opt_t; @@ -103,18 +103,9 @@ typedef struct { extern "C" { #endif -H5TOOLS_DLL hsize_t h5diff(const char *fname1, - const char *fname2, - const char *objname1, - const char *objname2, - diff_opt_t *opts); +H5TOOLS_DLL hsize_t h5diff(const char *fname1, const char *fname2, const char *objname1, const char *objname2, diff_opt_t *opts); -H5TOOLS_DLL hsize_t diff( hid_t file1_id, - const char *path1, - hid_t file2_id, - const char *path2, - diff_opt_t *opts, - diff_args_t *argdata); +H5TOOLS_DLL hsize_t diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_opt_t *opts, diff_args_t *argdata); #ifdef H5_HAVE_PARALLEL H5TOOLS_DLL void phdiff_dismiss_workers(void); @@ -133,63 +124,29 @@ H5TOOLS_DLL void print_manager_output(void); */ -hsize_t diff_dataset( hid_t file1_id, - hid_t file2_id, - const char *obj1_name, - const char *obj2_name, - diff_opt_t *opts); - -hsize_t diff_datasetid( hid_t dset1_id, - hid_t dset2_id, - const char *obj1_name, - const char *obj2_name, - diff_opt_t *opts); - - -hsize_t diff_match( hid_t file1_id, const char *grp1, trav_info_t *info1, - hid_t file2_id, const char *grp2, trav_info_t *info2, - trav_table_t *table, diff_opt_t *opts ); - -hsize_t diff_array( void *_mem1, - void *_mem2, - hsize_t nelmts, - hsize_t hyper_start, - int rank, - hsize_t *dims, - diff_opt_t *opts, - const char *name1, - const char *name2, - hid_t m_type, - hid_t container1_id, - hid_t container2_id); /* dataset where the reference came from*/ - - -int diff_can_type( hid_t f_type1, /* file data type */ - hid_t f_type2, /* file data type */ - int rank1, - int rank2, - hsize_t *dims1, - hsize_t *dims2, - hsize_t *maxdim1, - hsize_t *maxdim2, - const char *obj1_name, - const char *obj2_name, - diff_opt_t *opts, - int is_compound); - -hsize_t diff_attr_data(hid_t attr1_id, - hid_t attr2_id, - const char *attr1_name, - const char *attr2_name, - const char *path1, - const char *path2, - diff_opt_t *opts); - -hsize_t diff_attr(hid_t loc1_id, - hid_t loc2_id, - const char *path1, - const char *path2, - diff_opt_t *opts); +hsize_t diff_dataset(hid_t file1_id, hid_t file2_id, + const char *obj1_name, const char *obj2_name, diff_opt_t *opts); + +hsize_t diff_datasetid(hid_t dset1_id, hid_t dset2_id, + const char *obj1_name, const char *obj2_name, diff_opt_t *opts); + + +hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, + hid_t file2_id, const char *grp2, trav_info_t *info2, + trav_table_t *table, diff_opt_t *opts); + +hsize_t diff_array(void *_mem1, void *_mem2, + diff_opt_t *opts, hid_t container1_id, hid_t container2_id); + +int diff_can_type(hid_t f_type1, hid_t f_type2, int rank1, int rank2, + hsize_t *dims1, hsize_t *dims2, hsize_t *maxdim1, hsize_t *maxdim2, + diff_opt_t *opts, int is_compound); + +hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const char *name2, + const char *path1, const char *path2, diff_opt_t *opts); + +hsize_t diff_attr(hid_t loc1_id, hid_t loc2_id, + const char *path1, const char *path2, diff_opt_t *opts); /*------------------------------------------------------------------------- diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index 52bae51..1a4c727 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -132,97 +132,39 @@ typedef struct mcomp_t { * local prototypes *------------------------------------------------------------------------- */ -static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, - hid_t region2_id, diff_opt_t *opts); static hbool_t all_zero(const void *_mem, size_t size); static int ull2float(unsigned long long ull_value, float *f_value); -static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u, - int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos, - diff_opt_t *opts, const char *obj1, const char *obj2, int *ph); -static hsize_t character_compare_opt(unsigned char *mem1, unsigned char *mem2, - hsize_t i, int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos, - diff_opt_t *opts, const char *obj1, const char *obj2, int *ph); +static hsize_t character_compare(char *mem1, char *mem2, hsize_t elemtno, size_t u, diff_opt_t *opts); +static hsize_t character_compare_opt(unsigned char *mem1, unsigned char *mem2, hsize_t elemtno, diff_opt_t *opts); static hbool_t equal_float(float value, float expected, diff_opt_t *opts); static hbool_t equal_double(double value, double expected, diff_opt_t *opts); #if H5_SIZEOF_LONG_DOUBLE !=0 static hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *opts); #endif + static int print_data(diff_opt_t *opts); -static void print_pos(int *ph, int pp, hsize_t curr_pos, hsize_t *acc, - hsize_t *pos, int rank, hsize_t *dims, const char *obj1, - const char *obj2); -static void print_char_pos(int *ph, int pp, hsize_t curr_pos, size_t u, - hsize_t *acc, hsize_t *pos, int rank, hsize_t *dims, const char *obj1, - const char *obj2); +static void print_pos(diff_opt_t *opts, hsize_t elemtno, size_t u); static void h5diff_print_char(char ch); -static hsize_t diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, - int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos, - diff_opt_t *opts, const char *obj1, const char *obj2, - hid_t container1_id, hid_t container2_id, /*where the reference came from*/ - int *ph, /*print header */ - mcomp_t *members); /*compound members */ -static hsize_t diff_float(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); -static hsize_t diff_double(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); + +static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t region2_id, diff_opt_t *opts); +static hsize_t diff_datum(void *_mem1, void *_mem2, hsize_t elemtno, diff_opt_t *opts, + hid_t container1_id, hid_t container2_id, mcomp_t *members); +/* element diffs */ +static hsize_t diff_float_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); +static hsize_t diff_double_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); #if H5_SIZEOF_LONG_DOUBLE !=0 -static hsize_t diff_ldouble(unsigned char *mem1, - unsigned char *mem2, - hsize_t nelmts, - hsize_t hyper_start, - int rank, - hsize_t *dims, - hsize_t *acc, - hsize_t *pos, - diff_opt_t *opts, - const char *obj1, - const char *obj2, - int *ph); +static hsize_t diff_ldouble_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); #endif -static hsize_t diff_schar(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); -static hsize_t diff_uchar(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); -static hsize_t diff_short(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); -static hsize_t diff_ushort(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); -static hsize_t diff_int(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); -static hsize_t diff_uint(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); -static hsize_t diff_long(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); -static hsize_t diff_ulong(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); -static hsize_t diff_llong(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); -static hsize_t diff_ullong(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph); +static hsize_t diff_schar_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); +static hsize_t diff_uchar_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); +static hsize_t diff_short_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); +static hsize_t diff_ushort_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); +static hsize_t diff_int_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); +static hsize_t diff_uint_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); +static hsize_t diff_long_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); +static hsize_t diff_ulong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); +static hsize_t diff_llong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); +static hsize_t diff_ullong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts); /*------------------------------------------------------------------------- * NaN detection @@ -260,26 +202,23 @@ static void close_member_types(mcomp_t *members); *------------------------------------------------------------------------- */ -hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start, - int rank, hsize_t *dims, diff_opt_t *opts, const char *name1, const char *name2, - hid_t m_type, hid_t container1_id, hid_t container2_id) +hsize_t +diff_array(void *_mem1, void *_mem2, diff_opt_t *opts, hid_t container1_id, hid_t container2_id) { hsize_t nfound = 0; /* number of differences found */ size_t size; /* size of datum */ unsigned char *mem1 = (unsigned char*) _mem1; unsigned char *mem2 = (unsigned char*) _mem2; - hsize_t acc[32]; /* accumulator position */ - hsize_t pos[32]; /* matrix position */ - int ph = 1; /* print header */ hsize_t i; - int j; mcomp_t members; H5T_class_t type_class; - H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG(" - rank:%d hs_nelmts:%ld errstat:%d", opts->rank, opts->hs_nelmts, opts->err_stat); + opts->print_header = 1; /* enable print header */ + /* get the size. */ - size = H5Tget_size(m_type); - type_class = H5Tget_class(m_type); + size = H5Tget_size(opts->m_tid); + type_class = H5Tget_class(opts->m_tid); /* Fast comparison first for atomic type by memcmp(). * It is OK not to list non-atomic type here because it will not be caught @@ -289,24 +228,18 @@ hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start type_class != H5T_COMPOUND && type_class != H5T_STRING && type_class != H5T_VLEN && - HDmemcmp(mem1, mem2, size*nelmts) == 0) + HDmemcmp(mem1, mem2, size * opts->hs_nelmts) == 0) { + H5TOOLS_ENDDEBUG(":Fast comparison - errstat:%d", opts->err_stat); return 0; - - if (rank > 0) { - acc[rank - 1] = 1; - for (j = (rank - 2); j >= 0; j--) { - acc[j] = acc[j + 1] * dims[j + 1]; - } - for (j = 0; j < rank; j++) - pos[j] = 0; } - H5TOOLS_DEBUG("diff_array type_class:%d", type_class); + H5TOOLS_DEBUG("type_class:%d", type_class); switch (type_class) { case H5T_NO_CLASS: case H5T_TIME: case H5T_NCLASSES: default: + H5TOOLS_DEBUG("type_class:INVALID"); HDassert(0); break; @@ -315,37 +248,142 @@ hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start *------------------------------------------------------------------------- */ case H5T_FLOAT: - if (H5Tequal(m_type, H5T_NATIVE_FLOAT)) - nfound = diff_float(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); - else if (H5Tequal(m_type, H5T_NATIVE_DOUBLE)) - nfound = diff_double(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); + H5TOOLS_DEBUG("type_class:H5T_FLOAT"); + if (H5Tequal(opts->m_tid, H5T_NATIVE_FLOAT)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_float_element(mem1, mem2, i, opts); + + mem1 += sizeof(float); + mem2 += sizeof(float); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } + else if (H5Tequal(opts->m_tid, H5T_NATIVE_DOUBLE)){ + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_double_element(mem1, mem2, i, opts); + + mem1 += sizeof(double); + mem2 += sizeof(double); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } #if H5_SIZEOF_LONG_DOUBLE != 0 - else if (H5Tequal(m_type, H5T_NATIVE_LDOUBLE)) - nfound = diff_ldouble(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); + else if (H5Tequal(opts->m_tid, H5T_NATIVE_LDOUBLE)) { + for ( i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_ldouble_element(mem1, mem2, i, opts); + + mem1 += sizeof(long double); + mem2 += sizeof(long double); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } #endif break; case H5T_INTEGER: - if (H5Tequal(m_type, H5T_NATIVE_SCHAR)) - nfound = diff_schar(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); - else if (H5Tequal(m_type, H5T_NATIVE_UCHAR)) - nfound = diff_uchar(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); - else if (H5Tequal(m_type, H5T_NATIVE_SHORT)) - nfound = diff_short(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); - else if (H5Tequal(m_type, H5T_NATIVE_USHORT)) - nfound = diff_ushort(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); - else if (H5Tequal(m_type, H5T_NATIVE_INT)) - nfound = diff_int(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); - else if (H5Tequal(m_type, H5T_NATIVE_UINT)) - nfound = diff_uint(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); - else if (H5Tequal(m_type, H5T_NATIVE_LONG)) - nfound = diff_long(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); - else if (H5Tequal(m_type, H5T_NATIVE_ULONG)) - nfound = diff_ulong(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); - else if (H5Tequal(m_type, H5T_NATIVE_LLONG)) - nfound = diff_llong(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); - else if (H5Tequal(m_type, H5T_NATIVE_ULLONG)) - nfound = diff_ullong(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph); + H5TOOLS_DEBUG("type_class:H5T_INTEGER"); + if (H5Tequal(opts->m_tid, H5T_NATIVE_SCHAR)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_schar_element(mem1, mem2, i, opts); + mem1 += sizeof(char); + mem2 += sizeof(char); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } + else if (H5Tequal(opts->m_tid, H5T_NATIVE_UCHAR)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_uchar_element(mem1, mem2, i, opts); + + mem1 += sizeof(unsigned char); + mem2 += sizeof(unsigned char); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } + else if (H5Tequal(opts->m_tid, H5T_NATIVE_SHORT)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_short_element(mem1, mem2, i, opts); + + mem1 += sizeof(short); + mem2 += sizeof(short); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } + else if (H5Tequal(opts->m_tid, H5T_NATIVE_USHORT)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_ushort_element(mem1, mem2, i, opts); + + mem1 += sizeof(unsigned short); + mem2 += sizeof(unsigned short); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } + else if (H5Tequal(opts->m_tid, H5T_NATIVE_INT)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_int_element(mem1, mem2, i, opts); + + mem1 += sizeof(int); + mem2 += sizeof(int); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } + else if (H5Tequal(opts->m_tid, H5T_NATIVE_UINT)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_int_element(mem1, mem2, i, opts); + + mem1 += sizeof(unsigned int); + mem2 += sizeof(unsigned int); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } + else if (H5Tequal(opts->m_tid, H5T_NATIVE_LONG)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_long_element(mem1, mem2, i, opts); + + mem1 += sizeof(long); + mem2 += sizeof(long); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } + else if (H5Tequal(opts->m_tid, H5T_NATIVE_ULONG)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_ulong_element(mem1, mem2, i, opts); + + mem1 += sizeof(unsigned long); + mem2 += sizeof(unsigned long); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } + else if (H5Tequal(opts->m_tid, H5T_NATIVE_LLONG)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_llong_element(mem1, mem2, i, opts); + + mem1 += sizeof(long long); + mem2 += sizeof(long long); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } + else if (H5Tequal(opts->m_tid, H5T_NATIVE_ULLONG)) { + for (i = 0; i < opts->hs_nelmts; i++) { + nfound += diff_ullong_element(mem1, mem2, i, opts); + + mem1 += sizeof(unsigned long long); + mem2 += sizeof(unsigned long long); + if (opts->count_bool && nfound >= opts->count) + return nfound; + } /* nelmts */ + } break; /*------------------------------------------------------------------------- @@ -360,13 +398,13 @@ hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start case H5T_ARRAY: case H5T_VLEN: case H5T_REFERENCE: + H5TOOLS_DEBUG("type_class:OTHER"); HDmemset(&members, 0, sizeof(mcomp_t)); - get_member_types(m_type, &members); - H5TOOLS_DEBUG("call diff_datum nelmts:%d - errstat:%d", nelmts, opts->err_stat); - for (i = 0; i < nelmts; i++) { - nfound += diff_datum(mem1 + i * size, mem2 + i * size, m_type, i, rank, dims, acc, pos, opts, - name1, name2, container1_id, container2_id, &ph, &members); - if (opts->n && nfound >= opts->count) + get_member_types(opts->m_tid, &members); + for (i = 0; i < opts->hs_nelmts; i++) { + H5TOOLS_DEBUG("opts->pos[%ld]:%ld - nelmts:%ld", i, opts->pos[i], opts->hs_nelmts); + nfound += diff_datum(mem1 + i * size, mem2 + i * size, i, opts, container1_id, container2_id, &members); + if (opts->count_bool && nfound >= opts->count) break; } /* i */ close_member_types(&members); @@ -409,12 +447,7 @@ hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start *------------------------------------------------------------------------- */ static hsize_t -diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, - hsize_t *dims, hsize_t *acc, hsize_t *pos, diff_opt_t *opts, - const char *obj1, const char *obj2, - hid_t container1_id, hid_t container2_id, - int *ph, /*print header */ - mcomp_t *members) /*compound members */ +diff_datum(void *_mem1, void *_mem2, hsize_t elemtno, diff_opt_t *opts, hid_t container1_id, hid_t container2_id, mcomp_t *members) { unsigned char *mem1 = (unsigned char*) _mem1; unsigned char *mem2 = (unsigned char*) _mem2; @@ -425,7 +458,6 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, size_t offset; unsigned nmembs; unsigned j; - hsize_t nelmts; size_t size = 0; hbool_t iszero1; hbool_t iszero2; @@ -434,10 +466,10 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, hbool_t both_zero; diff_err_t ret_value = opts->err_stat; - H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); + H5TOOLS_START_DEBUG("ph:%d elemtno:%d - errstat:%d", opts->print_header, elemtno, opts->err_stat); - type_size = H5Tget_size(m_type); - type_class = H5Tget_class(m_type); + type_size = H5Tget_size(opts->m_tid); + type_class = H5Tget_class(opts->m_tid); /* Fast comparison first for atomic type by memcmp(). * It is OK not to list non-atomic type here because it will not be caught @@ -450,7 +482,7 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, HDmemcmp(mem1, mem2, type_size) == 0) H5TOOLS_GOTO_DONE(opts->err_stat); - switch (H5Tget_class(m_type)) { + switch (H5Tget_class(opts->m_tid)) { case H5T_NO_CLASS: case H5T_TIME: case H5T_NCLASSES: @@ -463,18 +495,22 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ case H5T_COMPOUND: - H5TOOLS_DEBUG("diff_datum H5T_COMPOUND"); + H5TOOLS_DEBUG("H5T_COMPOUND"); { - hid_t memb_type = H5I_INVALID_HID; + diff_opt_t cmpd_opts; + + cmpd_opts = *opts; nmembs = members->n; for (j = 0; j < nmembs; j++) { offset = members->offsets[j]; - memb_type = members->ids[j]; + cmpd_opts.m_tid = members->ids[j]; - nfound += diff_datum(mem1 + offset, mem2 + offset, memb_type, idx, - rank, dims, acc, pos, opts, obj1, obj2, container1_id, container2_id, ph, members->m[j]); + nfound += diff_datum(mem1 + offset, mem2 + offset, elemtno, &cmpd_opts, container1_id, container2_id, members->m[j]); } + opts->err_stat = opts->err_stat | cmpd_opts.err_stat; + opts->print_header = cmpd_opts.print_header; + opts->not_cmp = cmpd_opts.not_cmp; } break; @@ -483,7 +519,7 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ case H5T_STRING: - H5TOOLS_DEBUG("diff_datum H5T_STRING"); + H5TOOLS_DEBUG("H5T_STRING"); { char *s = NULL; char *sx = NULL; @@ -492,12 +528,12 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, size_t size1; size_t size2; size_t sizex; - size_t size_mtype = H5Tget_size(m_type); - H5T_str_t pad = H5Tget_strpad(m_type); + size_t size_mtype = H5Tget_size(opts->m_tid); + H5T_str_t pad = H5Tget_strpad(opts->m_tid); /* if variable length string */ - if (H5Tis_variable_str(m_type)) { - H5TOOLS_DEBUG("diff_datum H5T_STRING variable"); + if (H5Tis_variable_str(opts->m_tid)) { + H5TOOLS_DEBUG("H5T_STRING variable"); /* Get pointer to first string */ s1 = *(char **)((void *)mem1); if (s1) @@ -513,7 +549,7 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, size2 = 0; } else if (H5T_STR_NULLTERM == pad) { - H5TOOLS_DEBUG("diff_datum H5T_STRING null term"); + H5TOOLS_DEBUG("H5T_STRING null term"); /* Get pointer to first string */ s1 = (char*) mem1; if (s1) @@ -550,10 +586,10 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, * of length of strings. * For now mimic the previous way. */ - H5TOOLS_DEBUG("diff_datum string size:%d", size1); - H5TOOLS_DEBUG("diff_datum string size:%d", size2); + H5TOOLS_DEBUG("string size:%d", size1); + H5TOOLS_DEBUG("string size:%d", size2); if (size1 != size2) { - H5TOOLS_DEBUG("diff_datum string sizes difference"); + H5TOOLS_DEBUG("string sizes difference"); nfound++; } if (size1 < size2) { @@ -572,15 +608,13 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, /* check for NULL pointer for string */ if (s != NULL) { /* try fast compare first */ - if (HDmemcmp(s, sx, size) == 0) { - if (size1 != size2) - if (print_data(opts)) - for (u = size; u < sizex; u++) - character_compare(s + u, sx + u, idx, u, rank, dims, acc, pos, opts, obj1, obj2, ph); + if ((HDmemcmp(s, sx, size) == 0) && (size1 != size2)) { + for (u = size; u < sizex; u++) + character_compare(s + u, sx + u, elemtno, u, opts); } else for (u = 0; u < size; u++) - nfound += character_compare(s + u, sx + u, idx, u, rank, dims, acc, pos, opts, obj1, obj2, ph); + nfound += character_compare(s + u, sx + u, elemtno, u, opts); } /* end check for NULL pointer for string */ } break; @@ -590,10 +624,10 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ case H5T_BITFIELD: - H5TOOLS_DEBUG("diff_datum H5T_BITFIELD"); + H5TOOLS_DEBUG("H5T_BITFIELD"); /* byte-by-byte comparison */ for (u = 0; u < type_size; u++) - nfound += character_compare_opt(mem1 + u, mem2 + u, idx, rank, dims, acc, pos, opts, obj1, obj2, ph); + nfound += character_compare_opt(mem1 + u, mem2 + u, elemtno, opts); break; /*------------------------------------------------------------------------- @@ -601,10 +635,10 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ case H5T_OPAQUE: - H5TOOLS_DEBUG("diff_datum H5T_OPAQUE"); + H5TOOLS_DEBUG("H5T_OPAQUE"); /* byte-by-byte comparison */ for (u = 0; u < type_size; u++) - nfound += character_compare_opt(mem1 + u, mem2 + u, idx, rank, dims, acc, pos, opts, obj1, obj2, ph); + nfound += character_compare_opt(mem1 + u, mem2 + u, elemtno, opts); break; /*------------------------------------------------------------------------- @@ -617,7 +651,7 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, * compared, we convert both bit patterns to their corresponding * enumeration constant and do a string comparison */ - H5TOOLS_DEBUG("diff_datum H5T_ENUM"); + H5TOOLS_DEBUG("H5T_ENUM"); { char enum_name1[1024]; char enum_name2[1024]; @@ -629,11 +663,11 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, /* If the enum value cannot be converted to a string * it is set to an error string for later output. */ - err1 = H5Tenum_nameof(m_type, mem1, enum_name1, sizeof enum_name1); + err1 = H5Tenum_nameof(opts->m_tid, mem1, enum_name1, sizeof enum_name1); if (err1 < 0) HDsnprintf(enum_name1, sizeof(enum_name1), "**INVALID VALUE**"); - err2 = H5Tenum_nameof(m_type, mem2, enum_name2, sizeof enum_name2); + err2 = H5Tenum_nameof(opts->m_tid, mem2, enum_name2, sizeof enum_name2); if (err2 < 0) HDsnprintf(enum_name2, sizeof(enum_name2), "**INVALID VALUE**"); @@ -644,9 +678,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, * don't attempt to convert them - just report errors. */ nfound += 1; + opts->print_percentage = 0; + print_pos(opts, elemtno, 0); if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); parallel_print(S_FORMAT, enum_name1, enum_name2); } } @@ -654,15 +688,15 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, /* Both enum values were valid */ if (HDstrcmp(enum_name1, enum_name2) != 0) { nfound = 1; + opts->print_percentage = 0; + print_pos(opts, elemtno, 0); if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); parallel_print(S_FORMAT, enum_name1, enum_name2); } } else { for (u = 0; u < type_size; u++) - nfound += character_compare_opt(mem1 + u, mem2 + u, idx, rank, dims, acc, pos, opts, obj1, obj2, ph); + nfound += character_compare_opt(mem1 + u, mem2 + u, elemtno, opts); } } /* enable error reporting */ @@ -676,26 +710,32 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, */ case H5T_ARRAY: { - hid_t memb_type = H5I_INVALID_HID; hsize_t adims[H5S_MAX_RANK]; int ndims; + diff_opt_t arr_opts; + + H5TOOLS_DEBUG("H5T_ARRAY ph=%d", opts->print_header); - H5TOOLS_DEBUG("diff_datum H5T_ARRAY"); + arr_opts = *opts; + H5TOOLS_DEBUG("Check opts: hs_nelmts:%ld to %ld rank:%d to %ld", opts->hs_nelmts, arr_opts.hs_nelmts, opts->rank, arr_opts.rank); /* get the array's base datatype for each element */ - memb_type = H5Tget_super(m_type); - size = H5Tget_size(memb_type); - ndims = H5Tget_array_ndims(m_type); - H5Tget_array_dims2(m_type, adims); + arr_opts.m_tid = H5Tget_super(opts->m_tid); + size = H5Tget_size(arr_opts.m_tid); + ndims = H5Tget_array_ndims(opts->m_tid); + H5Tget_array_dims2(opts->m_tid, adims); HDassert(ndims >= 1 && ndims <= H5S_MAX_RANK); + H5TOOLS_DEBUG("attr ph=%d", arr_opts.print_header); /* calculate the number of array elements */ - for (u = 0, nelmts = 1; u < (unsigned) ndims; u++) - nelmts *= adims[u]; - for (u = 0; u < nelmts; u++) { - nfound += diff_datum(mem1 + u * size, mem2 + u * size, memb_type, idx, - rank, dims, acc, pos, opts, obj1, obj2, container1_id, container2_id, ph, members); - } - H5Tclose(memb_type); + for (u = 0, arr_opts.hs_nelmts = 1; u < (unsigned) ndims; u++) + arr_opts.hs_nelmts *= adims[u]; + for (u = 0; u < arr_opts.hs_nelmts; u++) { + nfound += diff_datum(mem1 + u * size, mem2 + u * size, elemtno, &arr_opts, container1_id, container2_id, members); + } + opts->err_stat = opts->err_stat | arr_opts.err_stat; + opts->print_header = arr_opts.print_header; + opts->not_cmp = arr_opts.not_cmp; + H5Tclose(arr_opts.m_tid); } break; @@ -704,9 +744,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ case H5T_REFERENCE: - H5TOOLS_DEBUG("diff_datum H5T_REFERENCE"); - iszero1 = all_zero(_mem1, H5Tget_size(m_type)); - iszero2 = all_zero(_mem2, H5Tget_size(m_type)); + H5TOOLS_DEBUG("H5T_REFERENCE"); + iszero1 = all_zero(_mem1, H5Tget_size(opts->m_tid)); + iszero2 = all_zero(_mem2, H5Tget_size(opts->m_tid)); if (iszero1 != iszero2) { nfound++; H5TOOLS_GOTO_DONE(opts->err_stat); @@ -714,13 +754,17 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, else if (!iszero1 && !iszero2) { hid_t obj1_id = H5I_INVALID_HID; hid_t obj2_id = H5I_INVALID_HID; + diff_opt_t ref_opts; /*------------------------------------------------------------------------- * H5T_STD_REF * Reference *------------------------------------------------------------------------- */ - if (H5Tequal(m_type, H5T_STD_REF)) { + ref_opts = *opts; + ref_opts.obj_name[0] = NULL; + ref_opts.obj_name[1] = NULL; + if (H5Tequal(ref_opts.m_tid, H5T_STD_REF)) { /* if (type_size == H5R_STD_REF_SIZE) */ hid_t region1_id = H5I_INVALID_HID; hid_t region2_id = H5I_INVALID_HID; @@ -730,66 +774,67 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, H5O_type_t obj2_type = -1; /* Object type */ H5R_type_t ref_type; /* Reference type */ - H5TOOLS_DEBUG("diff_datum H5T_REFERENCE - H5T_STD_REF"); + H5TOOLS_DEBUG("H5T_REFERENCE - H5T_STD_REF"); ref_type = H5Rget_type(ref1_buf); switch (ref_type) { case H5R_OBJECT1: H5TOOLS_DEBUG("ref_type is H5R_OBJECT1"); - if (H5Rget_obj_type3(ref1_buf, H5P_DEFAULT, &obj1_type) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rget_obj_type3 object 1 failed"); - } - if (H5Rget_obj_type3(ref2_buf, H5P_DEFAULT, &obj2_type) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rget_obj_type3 object 2 failed"); - } - - /* check object type */ - if (obj1_type != obj2_type) { - parallel_print("Different object types referenced: <%s> and <%s>", obj1, obj2); - opts->not_cmp = 1; - H5TOOLS_GOTO_DONE(opts->err_stat); - } - - if((obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Ropen_object object 1 failed"); - } - if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Ropen_object object 2 failed"); - } - - switch (obj1_type) { - case H5O_TYPE_DATASET: - nfound = diff_datasetid(obj1_id, obj2_id, NULL, NULL, opts); - break; - - case H5O_TYPE_GROUP: - case H5O_TYPE_NAMED_DATATYPE: - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - if (opts->m_verbose) - parallel_print("Warning: Comparison not possible of object types referenced: <%s> and <%s>\n", obj1, obj2); - opts->not_cmp = 1; - break; - } /* end switch */ - if(obj1_id >= 0) - if(H5Oclose(obj1_id) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Oclose H5R_OBJECT1 failed"); + if (H5Rget_obj_type3(ref1_buf, H5P_DEFAULT, &obj1_type) >= 0) { + if (H5Rget_obj_type3(ref2_buf, H5P_DEFAULT, &obj2_type) >= 0) { + /* check object type */ + if (obj1_type == obj2_type) { + switch (obj1_type) { + case H5O_TYPE_DATASET: + if((obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + nfound = diff_datasetid(obj1_id, obj2_id, opts->obj_name[0], opts->obj_name[1], &ref_opts); + if(H5Dclose(obj2_id) < 0) { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Dclose H5R_OBJECT1 failed"); + } + } + else { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Ropen_object object 2 failed"); + } + if(H5Dclose(obj1_id) < 0) { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Dclose H5R_OBJECT1 failed"); + } + } + else { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Ropen_object object 1 failed"); + } + break; + + case H5O_TYPE_GROUP: + case H5O_TYPE_NAMED_DATATYPE: + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + if (ref_opts.mode_verbose) + parallel_print("Warning: Comparison not possible of object types referenced: <%s> and <%s>\n", opts->obj_name[0], opts->obj_name[1]); + ref_opts.not_cmp = 1; + break; + } /* end switch */ + } + else { + parallel_print("Different object types referenced: <%s> and <%s>", opts->obj_name[0], opts->obj_name[1]); + ref_opts.not_cmp = 1; + ref_opts.err_stat = H5DIFF_ERR; + } } - if(obj2_id >= 0) - if(H5Oclose(obj2_id) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Oclose H5R_OBJECT1 failed"); + else { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Rget_obj_type3 object 2 failed"); } - if(H5Rdestroy(ref2_buf) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_OBJECT1 failed"); - if(H5Rdestroy(ref1_buf) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_OBJECT1 failed"); + } + else { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Rget_obj_type3 object 1 failed"); + } break; case H5R_DATASET_REGION1: H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1"); @@ -797,149 +842,143 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { if((region1_id = H5Ropen_region(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { if((region2_id = H5Ropen_region(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - nfound = diff_region(obj1_id, obj2_id, region1_id, region2_id, opts); + nfound = diff_region(obj1_id, obj2_id, region1_id, region2_id, &ref_opts); if(H5Sclose(region2_id) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Sclose H5R_DATASET_REGION1 failed"); + H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION1 failed"); } if(H5Sclose(region1_id) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Sclose H5R_DATASET_REGION1 failed"); + H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION1 failed"); } - if(H5Oclose(obj2_id) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Oclose H5R_DATASET_REGION1 failed"); + if(H5Dclose(obj2_id) < 0) + H5TOOLS_INFO("H5Oclose H5R_DATASET_REGION1 failed"); } else { - H5TOOLS_ERROR(H5DIFF_ERR, "H5Ropen_object H5R_DATASET_REGION1 failed"); + H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed"); } - if(H5Oclose(obj1_id) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Oclose H5R_DATASET_REGION1 failed"); + if(H5Dclose(obj1_id) < 0) + H5TOOLS_INFO("H5Oclose H5R_DATASET_REGION1 failed"); } else { - H5TOOLS_ERROR(H5DIFF_ERR, "H5Ropen_object H5R_DATASET_REGION1 failed"); + H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed"); } - if(H5Rdestroy(ref2_buf) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_DATASET_REGION1 failed"); - if(H5Rdestroy(ref1_buf) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_DATASET_REGION1 failed"); break; case H5R_OBJECT2: H5TOOLS_DEBUG("ref_type is H5R_OBJECT2"); - if (H5Rget_obj_type3(ref1_buf, H5P_DEFAULT, &obj1_type) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rget_obj_type3 object 1 failed"); - } - if (H5Rget_obj_type3(ref2_buf, H5P_DEFAULT, &obj2_type) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rget_obj_type3 object 2 failed"); - } - - /* check object type */ - if (obj1_type != obj2_type) { - parallel_print("Different object types referenced: <%s> and <%s>", obj1, obj2); - opts->not_cmp = 1; - H5TOOLS_GOTO_DONE(opts->err_stat); - } - - if((obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Ropen_object object 1 failed"); - } - if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Ropen_object object 2 failed"); - } - - switch (obj1_type) { - case H5O_TYPE_DATASET: - H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : DATASET"); - nfound = diff_datasetid(obj1_id, obj2_id, NULL, NULL, opts); - break; - - case H5O_TYPE_GROUP: - H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : GROUP"); - if (opts->m_verbose) - parallel_print("Warning: Comparison not possible of group object types referenced: <%s> and <%s>\n", obj1, obj2); - opts->not_cmp = 1; - break; - - case H5O_TYPE_NAMED_DATATYPE: - H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : NAMED"); - if (opts->m_verbose) - parallel_print("Warning: Comparison not possible of named datatypes object types referenced: <%s> and <%s>\n", obj1, obj2); - opts->not_cmp = 1; - break; - - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - if (opts->m_verbose) - parallel_print("Warning: Comparison not possible of object types referenced: <%s> and <%s>\n", obj1, obj2); - opts->not_cmp = 1; - break; - } /* end switch */ - if(obj1_id >= 0) - if(H5Oclose(obj1_id) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed"); + if (H5Rget_obj_type3(ref1_buf, H5P_DEFAULT, &obj1_type) >= 0) { + if (H5Rget_obj_type3(ref2_buf, H5P_DEFAULT, &obj2_type) >= 0) { + /* check object type */ + if (obj1_type == obj2_type) { + if((obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + switch (obj1_type) { + case H5O_TYPE_DATASET: + H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : DATASET"); + nfound = diff_datasetid(obj1_id, obj2_id, opts->obj_name[0], opts->obj_name[1], &ref_opts); + break; + + case H5O_TYPE_GROUP: + H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : GROUP"); + if (ref_opts.mode_verbose) + parallel_print("Warning: Comparison not possible of group object types referenced: <%s> and <%s>\n", opts->obj_name[0], opts->obj_name[1]); + ref_opts.not_cmp = 1; + break; + + case H5O_TYPE_NAMED_DATATYPE: + H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : NAMED"); + if (ref_opts.mode_verbose) + parallel_print("Warning: Comparison not possible of named datatypes object types referenced: <%s> and <%s>\n", opts->obj_name[0], opts->obj_name[1]); + ref_opts.not_cmp = 1; + break; + + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + if (ref_opts.mode_verbose) + parallel_print("Warning: Comparison not possible of object types referenced: <%s> and <%s>\n", opts->obj_name[0], opts->obj_name[1]); + ref_opts.not_cmp = 1; + break; + } /* end switch */ + if(H5Oclose(obj2_id) < 0) { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed"); + } + } + else { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Ropen_object object 2 failed"); + } + if(H5Oclose(obj1_id) < 0) { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed"); + } + } + else { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Ropen_object object 1 failed"); + } + } + else { + parallel_print("Different object types referenced: <%s> and <%s>", opts->obj_name[0], opts->obj_name[1]); + ref_opts.not_cmp = 1; + ref_opts.err_stat = H5DIFF_ERR; + } } - if(obj2_id >= 0) - if(H5Oclose(obj2_id) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed"); + else { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Rget_obj_type3 object 2 failed"); } - if(H5Rdestroy(ref2_buf) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_OBJECT2 failed"); - if(H5Rdestroy(ref1_buf) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_OBJECT2 failed"); + } + else { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Rget_obj_type3 object 1 failed"); + } break; case H5R_DATASET_REGION2: H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2"); /* if (obj_id < 0) - could mean that no reference was written do not throw failure */ - obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT); - obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT); - if((obj1_id < 0) || (obj2_id < 0)) { - H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed"); + if((obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) { + H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 object 1 failed"); } else { - H5TOOLS_DEBUG("open_region - H5R_DATASET_REGION2"); - if((region1_id = H5Ropen_region(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - if (h5tools_is_zero(ref1_buf, H5Tget_size(H5T_STD_REF))) { - H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2"); - } - else { - if((region2_id = H5Ropen_region(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - if (h5tools_is_zero(ref2_buf, H5Tget_size(H5T_STD_REF))) { - H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2"); - } - else { - nfound = diff_region(obj1_id, obj2_id, region1_id, region2_id, opts); - } - if(H5Sclose(region2_id) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Sclose H5R_DATASET_REGION2 failed"); + if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + H5TOOLS_DEBUG("open_region - H5R_DATASET_REGION2"); + if((region1_id = H5Ropen_region(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (h5tools_is_zero(ref1_buf, H5Tget_size(H5T_STD_REF))) { + H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2"); } - else - H5TOOLS_ERROR(H5DIFF_ERR, "H5Ropen_region H5R_DATASET_REGION2 failed"); - } /* end else to if (h5tools_is_zero(... */ - if(H5Sclose(region1_id) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Sclose H5R_DATASET_REGION2 failed"); - } - else - H5TOOLS_ERROR(H5DIFF_ERR, "H5Ropen_region H5R_DATASET_REGION2 failed"); - if (obj1_id >= 0) - if(H5Dclose(obj1_id) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed"); + else { + if((region2_id = H5Ropen_region(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (h5tools_is_zero(ref2_buf, H5Tget_size(H5T_STD_REF))) { + H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2"); + } + else { + nfound = diff_region(obj1_id, obj2_id, region1_id, region2_id, &ref_opts); + } + if(H5Sclose(region2_id) < 0) + H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed"); + } + else + H5TOOLS_INFO("H5Ropen_region H5R_DATASET_REGION2 failed"); + } /* end else to if (h5tools_is_zero(... */ + if(H5Sclose(region1_id) < 0) + H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed"); } - if (obj2_id >= 0) + else + H5TOOLS_ERROR(H5DIFF_ERR, "H5Ropen_region H5R_DATASET_REGION2 failed"); if(H5Dclose(obj2_id) < 0) { - opts->err_stat = H5DIFF_ERR; + ref_opts.err_stat = H5DIFF_ERR; H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed"); } - if(H5Rdestroy(ref1_buf) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_DATASET_REGION2 failed"); - if(H5Rdestroy(ref2_buf) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_DATASET_REGION2 failed"); + } + else { + H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 object 2 failed"); + } + if(H5Dclose(obj1_id) < 0) { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed"); + } } break; case H5R_ATTR: @@ -948,44 +987,42 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, char name2[ATTR_NAME_MAX]; H5TOOLS_DEBUG("ref_type is H5R_ATTR"); - if((obj1_id = H5Ropen_attr(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) { - parallel_print("Warning: Cannot open referenced attribute: attribute 1\n"); - H5TOOLS_INFO("H5Ropen_attr object 1 failed"); - } - if((obj2_id = H5Ropen_attr(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) { - parallel_print("Warning: Cannot open referenced attribute: attribute 2\n"); - H5TOOLS_INFO("H5Ropen_attr object 2 failed"); - } - - if((obj1_id < 0) || (obj2_id < 0)) { - H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed"); - } - else { - /* get name */ - if(H5Aget_name(obj1_id, (size_t)ATTR_NAME_MAX, name1) < 0) - H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Aget_name first attribute failed"); - /* get name */ - if(H5Aget_name(obj2_id, (size_t)ATTR_NAME_MAX, name2) < 0) - H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Aget_name second attribute failed"); - - H5TOOLS_DEBUG("H5R_ATTR diff_attr_data - name1=%s, name2=%s", name1, name2); - nfound = diff_attr_data(obj1_id, obj2_id, name1, name2, NULL, NULL, opts); - } + if((obj1_id = H5Ropen_attr(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if((obj2_id = H5Ropen_attr(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + /* get name */ + if(H5Aget_name(obj1_id, (size_t)ATTR_NAME_MAX, name1) >= 0) { + /* get name */ + if(H5Aget_name(obj2_id, (size_t)ATTR_NAME_MAX, name2) >= 0) { + H5TOOLS_DEBUG("H5R_ATTR diff_attr_data - name1=%s, name2=%s", name1, name2); + nfound = diff_attr_data(obj1_id, obj2_id, name1, name2, opts->obj_name[0], opts->obj_name[1], &ref_opts); + } + else { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Aget_name second attribute failed"); + } + } + else { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Aget_name first attribute failed"); + } - if(obj1_id >= 0) - if(H5Aclose(obj1_id) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Aclose H5R_ATTR failed"); + if(H5Aclose(obj2_id) < 0) { + ref_opts.err_stat = H5DIFF_ERR; + H5TOOLS_INFO("H5Aclose H5R_ATTR failed"); + } } - if(obj2_id >= 0) - if(H5Aclose(obj2_id) < 0) { - opts->err_stat = H5DIFF_ERR; + else { + parallel_print("Warning: Cannot open referenced attribute2\n"); + H5TOOLS_INFO("H5Ropen_attr object 2 failed"); + } + if(H5Aclose(obj1_id) < 0) { H5TOOLS_INFO("H5Aclose H5R_ATTR failed"); } - if(H5Rdestroy(ref2_buf) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_ATTR failed"); - if(H5Rdestroy(ref1_buf) < 0) - H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_ATTR failed"); + } + else { + parallel_print("Warning: Cannot open referenced attribute1\n"); + H5TOOLS_INFO("H5Ropen_attr object 1 failed"); + } } break; case H5R_BADTYPE: @@ -993,43 +1030,20 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, default: break; } /* end switch */ - H5TOOLS_DEBUG("diff_datum H5T_REFERENCE - H5T_STD_REF complete nfound:%d - errstat:%d", nfound, opts->err_stat); + if(H5Rdestroy(ref2_buf) < 0) + H5TOOLS_INFO("H5Rdestroy H5R_OBJECT1 failed"); + if(H5Rdestroy(ref1_buf) < 0) + H5TOOLS_INFO("H5Rdestroy H5R_OBJECT1 failed"); + H5TOOLS_DEBUG("H5T_REFERENCE - H5T_STD_REF complete nfound:%d - errstat:%d", nfound, ref_opts.err_stat); } /*------------------------------------------------------------------------- * H5T_STD_REF_DSETREG * Dataset region reference *------------------------------------------------------------------------- */ - else if (H5Tequal(m_type, H5T_STD_REF_DSETREG)) { + else if (H5Tequal(ref_opts.m_tid, H5T_STD_REF_DSETREG)) { /* if (type_size == H5R_DSET_REG_REF_BUF_SIZE) */ - hid_t region1_id = H5I_INVALID_HID; - hid_t region2_id = H5I_INVALID_HID; - - H5TOOLS_INFO("H5T_STD_REF_DSETREG reference type"); - - if ((obj1_id = H5Rdereference2(container1_id, H5P_DEFAULT, H5R_DATASET_REGION, _mem1)) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rdereference2 object 1 failed"); - } - if ((obj2_id = H5Rdereference2(container2_id, H5P_DEFAULT, H5R_DATASET_REGION, _mem2)) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rdereference2 object 2 failed"); - } - if ((region1_id = H5Rget_region(container1_id, H5R_DATASET_REGION, _mem1)) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rget_region object 1 failed"); - } - if ((region2_id = H5Rget_region(container2_id, H5R_DATASET_REGION, _mem2)) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rget_region object 2 failed"); - } - - nfound = diff_region(obj1_id, obj2_id, region1_id, region2_id, opts); - - H5Oclose(obj1_id); - H5Oclose(obj2_id); - H5Sclose(region1_id); - H5Sclose(region2_id); + H5TOOLS_DEBUG("H5T_STD_REF_DSETREG"); }/*dataset reference*/ /*------------------------------------------------------------------------- @@ -1037,52 +1051,15 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, * Object references. get the type and OID of the referenced object *------------------------------------------------------------------------- */ - else if (H5Tequal(m_type, H5T_STD_REF_OBJ)) { + else if (H5Tequal(ref_opts.m_tid, H5T_STD_REF_OBJ)) { /* if (type_size == H5R_OBJ_REF_BUF_SIZE) */ - H5O_type_t obj1_type; - H5O_type_t obj2_type; - - H5TOOLS_INFO("H5T_STD_REF_OBJ reference type"); - - if (H5Rget_obj_type2(container1_id, H5R_OBJECT, _mem1, &obj1_type) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rget_obj_type2 object 1 failed"); - } - if (H5Rget_obj_type2(container2_id, H5R_OBJECT, _mem2, &obj2_type) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rget_obj_type2 object 2 failed"); - } - - /* check object type */ - if (obj1_type != obj2_type) { - parallel_print("Different object types referenced: <%s> and <%s>", obj1, obj2); - opts->not_cmp = 1; - H5TOOLS_GOTO_DONE(opts->err_stat); - } - - if ((obj1_id = H5Rdereference2(container1_id, H5P_DEFAULT, H5R_OBJECT, _mem1)) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rdereference2 object 1 failed"); - } - if ((obj2_id = H5Rdereference2(container2_id, H5P_DEFAULT, H5R_OBJECT, _mem2)) < 0) { - opts->err_stat = H5DIFF_ERR; - H5TOOLS_INFO("H5Rdereference2 object 2 failed"); - } - - /* compare */ - if (obj1_type == H5O_TYPE_DATASET) - nfound = diff_datasetid(obj1_id, obj2_id, NULL, NULL, opts); - else { - if (opts->m_verbose) - parallel_print("Warning: Comparison not possible of object types referenced: <%s> and <%s>\n", obj1, obj2); - opts->not_cmp = 1; - } - - H5Oclose(obj1_id); - H5Oclose(obj2_id); + H5TOOLS_DEBUG("H5T_STD_REF_OBJ"); }/*object reference*/ + opts->print_header = ref_opts.print_header; + opts->not_cmp = ref_opts.not_cmp; + opts->err_stat = ref_opts.err_stat | ret_value; }/*is zero*/ - H5TOOLS_DEBUG("diff_datum H5T_REFERENCE complete"); + H5TOOLS_DEBUG("H5T_REFERENCE complete"); break; /*------------------------------------------------------------------------- @@ -1091,21 +1068,26 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, */ case H5T_VLEN: { - hid_t memb_type = H5I_INVALID_HID; + diff_opt_t vl_opts; + + H5TOOLS_DEBUG("H5T_VLEN"); - H5TOOLS_DEBUG("diff_datum H5T_VLEN"); + vl_opts = *opts; /* get the VL sequences's base datatype for each element */ - memb_type = H5Tget_super(m_type); - size = H5Tget_size(memb_type); + vl_opts.m_tid = H5Tget_super(opts->m_tid); + size = H5Tget_size(vl_opts.m_tid); /* get the number of sequence elements */ - nelmts = ((hvl_t *)((void *)mem1))->len; + vl_opts.hs_nelmts = ((hvl_t *)((void *)mem1))->len; - for (j = 0; j < nelmts; j++) - nfound += diff_datum(((char *) (((hvl_t *)((void *)mem1))->p)) + j * size, ((char *) (((hvl_t *)((void *)mem2))->p)) + j * size, memb_type, idx, /* Extra (void *) cast to quiet "cast to create alignment" warning - 2019/07/05, QAK */ - rank, dims, acc, pos, opts, obj1, obj2, container1_id, container2_id, ph, members); + for (j = 0; j < vl_opts.hs_nelmts; j++) + nfound += diff_datum(((char *) (((hvl_t *)((void *)mem1))->p)) + j * size, ((char *) (((hvl_t *)((void *)mem2))->p)) + j * size, elemtno, /* Extra (void *) cast to quiet "cast to create alignment" warning - 2019/07/05, QAK */ + &vl_opts, container1_id, container2_id, members); + opts->print_header = vl_opts.print_header; + opts->not_cmp = vl_opts.not_cmp; + opts->err_stat = opts->err_stat | vl_opts.err_stat; - H5Tclose(memb_type); + H5Tclose(vl_opts.m_tid); } break; @@ -1114,81 +1096,16 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ case H5T_INTEGER: - H5TOOLS_DEBUG("diff_datum H5T_INTEGER"); - type_sign = H5Tget_sign(m_type); + H5TOOLS_DEBUG("H5T_INTEGER"); + type_sign = H5Tget_sign(opts->m_tid); /*------------------------------------------------------------------------- * H5T_NATIVE_SCHAR *------------------------------------------------------------------------- */ if (type_size == 1 && type_sign != H5T_SGN_NONE) { - char temp1_char; - char temp2_char; - if(type_size != sizeof(char)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not char size"); - HDmemcpy(&temp1_char, mem1, sizeof(char)); - HDmemcpy(&temp2_char, mem2, sizeof(char)); - /* -d and !-p */ - if (opts->d && !opts->p) { - if (ABS(temp1_char-temp2_char) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); - } - nfound++; - } - } - /* !-d and -p */ - else if (!opts->d && opts->p) { - PER(temp1_char, temp2_char); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per); - } - nfound++; - } - } - /* -d and -p */ - else if (opts->d && opts->p) { - PER(temp1_char, temp2_char); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); - } - nfound++; - } - else if (per > opts->percent && ABS(temp1_char - temp2_char) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per); - } - nfound++; - } - } - else if (temp1_char != temp2_char) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); - } - nfound++; - } + nfound += diff_schar_element(mem1, mem2, elemtno, opts); } /*H5T_NATIVE_SCHAR*/ /*------------------------------------------------------------------------- @@ -1196,75 +1113,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ else if (type_size == 1 && type_sign == H5T_SGN_NONE) { - unsigned char temp1_uchar; - unsigned char temp2_uchar; - if(type_size != sizeof(unsigned char)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not unsigned char size"); - - HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); - HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); - /* -d and !-p */ - if (opts->d && !opts->p) { - if (PDIFF(temp1_uchar, temp2_uchar) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); - } - nfound++; - } - } - /* !-d and -p */ - else if (!opts->d && opts->p) { - PER_UNSIGN(signed char, temp1_uchar, temp2_uchar); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per); - } - nfound++; - } - } - /* -d and -p */ - else if (opts->d && opts->p) { - PER_UNSIGN(signed char, temp1_uchar, temp2_uchar); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); - } - nfound++; - } - else if (per > opts->percent && PDIFF(temp1_uchar, temp2_uchar) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per); - } - nfound++; - } - } - else if (temp1_uchar != temp2_uchar) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); - } - nfound++; - } + nfound += diff_uchar_element(mem1, mem2, elemtno, opts); } /*H5T_NATIVE_UCHAR*/ /*------------------------------------------------------------------------- @@ -1272,75 +1123,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ else if (type_size == 2 && type_sign != H5T_SGN_NONE) { - short temp1_short; - short temp2_short; - if(type_size != sizeof(short)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not short size"); - - HDmemcpy(&temp1_short, mem1, sizeof(short)); - HDmemcpy(&temp2_short, mem2, sizeof(short)); - /* -d and !-p */ - if (opts->d && !opts->p) { - if (ABS(temp1_short - temp2_short) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); - } - nfound++; - } - } - /* !-d and -p */ - else if (!opts->d && opts->p) { - PER(temp1_short, temp2_short); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per); - } - nfound++; - } - } - /* -d and -p */ - else if (opts->d && opts->p) { - PER(temp1_short, temp2_short); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); - } - nfound++; - } - else if (per > opts->percent && ABS(temp1_short - temp2_short) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per); - } - nfound++; - } - } - else if (temp1_short != temp2_short) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); - } - nfound++; - } + nfound += diff_short_element(mem1, mem2, elemtno, opts); } /*H5T_NATIVE_SHORT*/ /*------------------------------------------------------------------------- @@ -1348,75 +1133,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ else if (type_size == 2 && type_sign == H5T_SGN_NONE) { - unsigned short temp1_ushort; - unsigned short temp2_ushort; - if(type_size != sizeof(unsigned short)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not unsigned short size"); - - HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short)); - HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short)); - /* -d and !-p */ - if (opts->d && !opts->p) { - if (PDIFF(temp1_ushort, temp2_ushort) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); - } - nfound++; - } - } - /* !-d and -p */ - else if (!opts->d && opts->p) { - PER_UNSIGN(signed short, temp1_ushort, temp2_ushort); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per); - } - nfound++; - } - } - /* -d and -p */ - else if (opts->d && opts->p) { - PER_UNSIGN(signed short, temp1_ushort, temp2_ushort); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); - } - nfound++; - } - else if (per > opts->percent && PDIFF(temp1_ushort, temp2_ushort) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per); - } - nfound++; - } - } - else if (temp1_ushort != temp2_ushort) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); - } - nfound++; - } + nfound += diff_ushort_element(mem1, mem2, elemtno, opts); } /*H5T_NATIVE_USHORT*/ /*------------------------------------------------------------------------- @@ -1424,75 +1143,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ else if (type_size == 4 && type_sign != H5T_SGN_NONE) { - int temp1_int; - int temp2_int; - if(type_size != sizeof(int)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not int size"); - - HDmemcpy(&temp1_int, mem1, sizeof(int)); - HDmemcpy(&temp2_int, mem2, sizeof(int)); - /* -d and !-p */ - if (opts->d && !opts->p) { - if (ABS(temp1_int-temp2_int) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); - } - nfound++; - } - } - /* !-d and -p */ - else if (!opts->d && opts->p) { - PER(temp1_int, temp2_int); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per); - } - nfound++; - } - } - /* -d and -p */ - else if (opts->d && opts->p) { - PER(temp1_int, temp2_int); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); - } - nfound++; - } - else if (per > opts->percent && ABS(temp1_int - temp2_int) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per); - } - nfound++; - } - } - else if (temp1_int != temp2_int) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); - } - nfound++; - } + nfound += diff_int_element(mem1, mem2, elemtno, opts); } /*H5T_NATIVE_INT*/ /*------------------------------------------------------------------------- @@ -1500,75 +1153,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ else if (type_size == 4 && type_sign == H5T_SGN_NONE) { - unsigned int temp1_uint; - unsigned int temp2_uint; - if(type_size != sizeof(unsigned int)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not unsigned int size"); - - HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int)); - HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int)); - /* -d and !-p */ - if (opts->d && !opts->p) { - if (PDIFF(temp1_uint, temp2_uint) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(UI_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); - } - nfound++; - } - } - /* !-d and -p */ - else if (!opts->d && opts->p) { - PER_UNSIGN(signed int, temp1_uint, temp2_uint); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(UI_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(UI_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per); - } - nfound++; - } - } - /* -d and -p */ - else if (opts->d && opts->p) { - PER_UNSIGN(signed int, temp1_uint, temp2_uint); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(UI_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); - } - nfound++; - } - else if (per > opts->percent && PDIFF(temp1_uint,temp2_uint) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(UI_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per); - } - nfound++; - } - } - else if (temp1_uint != temp2_uint) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(UI_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); - } - nfound++; - } + nfound += diff_uint_element(mem1, mem2, elemtno, opts); } /*H5T_NATIVE_UINT*/ /*------------------------------------------------------------------------- @@ -1576,75 +1163,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ else if (type_size == 8 && type_sign != H5T_SGN_NONE) { - long temp1_long; - long temp2_long; - if(type_size != sizeof(long)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not long size"); - - HDmemcpy(&temp1_long, mem1, sizeof(long)); - HDmemcpy(&temp2_long, mem2, sizeof(long)); - /* -d and !-p */ - if (opts->d && !opts->p) { - if (ABS(temp1_long-temp2_long) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); - } - nfound++; - } - } - /* !-d and -p */ - else if (!opts->d && opts->p) { - PER(temp1_long, temp2_long); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per); - } - nfound++; - } - } - /* -d and -p */ - else if (opts->d && opts->p) { - PER(temp1_long, temp2_long); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); - } - nfound++; - } - else if (per > opts->percent && ABS(temp1_long-temp2_long) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per); - } - nfound++; - } - } - else if (temp1_long != temp2_long) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); - } - nfound++; - } + nfound += diff_long_element(mem1, mem2, elemtno, opts); } /*H5T_NATIVE_LONG*/ /*------------------------------------------------------------------------- @@ -1652,76 +1173,30 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ else if (type_size == 8 && type_sign == H5T_SGN_NONE) { - unsigned long temp1_ulong; - unsigned long temp2_ulong; - if(type_size != sizeof(unsigned long)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not unsigned long size"); + nfound += diff_ulong_element(mem1, mem2, elemtno, opts); + } /*H5T_NATIVE_ULONG*/ - HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long)); - HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long)); - /* -d and !-p */ - if (opts->d && !opts->p) { - if (PDIFF(temp1_ulong, temp2_ulong) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); - } - nfound++; - } - } - /* !-d and -p */ - else if (!opts->d && opts->p) { - PER_UNSIGN(signed long, temp1_ulong, temp2_ulong); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per); - } - nfound++; - } - } - /* -d and -p */ - else if (opts->d && opts->p) { - PER_UNSIGN(signed long, temp1_ulong, temp2_ulong); + /*------------------------------------------------------------------------- + * H5T_NATIVE_LLONG + *------------------------------------------------------------------------- + */ + else if (type_size == 16 && type_sign != H5T_SGN_NONE) { + if(type_size != sizeof(long long)) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not long long size"); + nfound += diff_llong_element(mem1, mem2, elemtno, opts); + } /*H5T_NATIVE_LLONG*/ - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); - } - nfound++; - } - else if (per > opts->percent && PDIFF(temp1_ulong,temp2_ulong) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per); - } - nfound++; - } - } - else if (temp1_ulong != temp2_ulong) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); - } - nfound++; - } - } /*H5T_NATIVE_ULONG*/ + /*------------------------------------------------------------------------- + * H5T_NATIVE_ULLONG + *------------------------------------------------------------------------- + */ + else if (type_size == 16 && type_sign == H5T_SGN_NONE) { + if(type_size != sizeof(unsigned long long)) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not unsigned long long size"); + nfound += diff_ullong_element(mem1, mem2, elemtno, opts); + } /*H5T_NATIVE_ULLONG*/ break; /* H5T_INTEGER class */ /*------------------------------------------------------------------------- @@ -1733,319 +1208,21 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, * H5T_NATIVE_FLOAT *------------------------------------------------------------------------- */ - H5TOOLS_DEBUG("diff_datum H5T_FLOAT"); + H5TOOLS_DEBUG("H5T_FLOAT"); if (type_size == 4) { - float temp1_float; - float temp2_float; - hbool_t isnan1 = FALSE; - hbool_t isnan2 = FALSE; - if(type_size != sizeof(float)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not float size"); - - HDmemcpy(&temp1_float, mem1, sizeof(float)); - HDmemcpy(&temp2_float, mem2, sizeof(float)); - - /* logic for detecting NaNs is different with opts -d, -p and no opts */ - - /*------------------------------------------------------------------------- - * -d and !-p - *------------------------------------------------------------------------- - */ - if (opts->d && !opts->p) { - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_float); - isnan2 = HDisnan(temp2_float); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - if (ABS(temp1_float-temp2_float) > (float) opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; - } - } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; - } - } - /*------------------------------------------------------------------------- - * !-d and -p - *------------------------------------------------------------------------- - */ - else if (!opts->d && opts->p) { - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_float); - isnan2 = HDisnan(temp2_float); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_float, temp2_float); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; - } - else if (per > opts->percent && (double) ABS(temp1_float - temp2_float) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float, - (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float)); - } - nfound++; - } - } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; - } - } - /*------------------------------------------------------------------------- - * -d and -p - *------------------------------------------------------------------------- - */ - else if (opts->d && opts->p) { - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_float); - isnan2 = HDisnan(temp2_float); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_float, temp2_float); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float, - (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float)); - } - nfound++; - } - } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; - } - } - /*------------------------------------------------------------------------- - * no -d and -p - *------------------------------------------------------------------------- - */ - else if (equal_float(temp1_float, temp2_float, opts) == FALSE) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; - } - } /*H5T_NATIVE_FLOAT*/ - + nfound += diff_float_element(mem1, mem2, elemtno, opts); + } /*------------------------------------------------------------------------- * H5T_NATIVE_DOUBLE *------------------------------------------------------------------------- */ else if (type_size == 8) { - double temp1_double; - double temp2_double; - hbool_t isnan1 = FALSE; - hbool_t isnan2 = FALSE; - if(type_size != sizeof(double)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not double size"); - - HDmemcpy(&temp1_double, mem1, sizeof(double)); - HDmemcpy(&temp2_double, mem2, sizeof(double)); - - /* logic for detecting NaNs is different with opts -d, -p and no opts */ - /*------------------------------------------------------------------------- - * -d and !-p - *------------------------------------------------------------------------- - */ - if (opts->d && !opts->p) { - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - if (ABS(temp1_double-temp2_double) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } /* opts->d && !opts->p */ - /*------------------------------------------------------------------------- - * !-d and -p - *------------------------------------------------------------------------- - */ - else if (!opts->d && opts->p) { - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_double, temp2_double); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double)); - } - nfound++; - } - } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } - /*------------------------------------------------------------------------- - * -d and -p - *------------------------------------------------------------------------- - */ - else if (opts->d && opts->p) { - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_double, temp2_double); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - else if (per > opts->percent && - ABS(temp1_double-temp2_double) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double)); - } - nfound++; - } - } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } - /*------------------------------------------------------------------------- - * no -d and -p - *------------------------------------------------------------------------- - */ - else if (equal_double(temp1_double, temp2_double, opts) == FALSE) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } /*H5T_NATIVE_DOUBLE*/ - + nfound += diff_double_element(mem1, mem2, elemtno, opts); + } #if H5_SIZEOF_LONG_DOUBLE != H5_SIZEOF_DOUBLE /*------------------------------------------------------------------------- @@ -2053,157 +1230,10 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank, *------------------------------------------------------------------------- */ else if (type_size == H5_SIZEOF_LONG_DOUBLE) { - long double temp1_double; - long double temp2_double; - hbool_t isnan1 = FALSE; - hbool_t isnan2 = FALSE; - if(type_size != sizeof(long double)) { H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not long double size"); } - - HDmemcpy(&temp1_double, mem1, sizeof(long double)); - HDmemcpy(&temp2_double, mem2, sizeof(long double)); - - /* logic for detecting NaNs is different with options -d, -p and no options */ - - /*------------------------------------------------------------------------- - * -d and !-p - *------------------------------------------------------------------------- - */ - if (opts->d && !opts->p) { - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - if (ABS(temp1_double-temp2_double) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LD_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } /* NaN */ - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } - /*------------------------------------------------------------------------- - * !-d and -p - *------------------------------------------------------------------------- - */ - else if (!opts->d && opts->p) { - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_double,temp2_double); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LD_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LD_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double)); - } - nfound++; - } - } /* NaN */ - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } - /*------------------------------------------------------------------------- - * -d and -p - *------------------------------------------------------------------------- - */ - else if (opts->d && opts->p) { - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_double,temp2_double); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LD_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - else if (per > opts->percent && ABS(temp1_double-temp2_double) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LD_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double)); - } - nfound++; - } - } /* NaN */ - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } - /*------------------------------------------------------------------------- - * no -d and -p - *------------------------------------------------------------------------- - */ - else if (equal_ldouble(temp1_double, temp2_double, opts) == FALSE) { - if (print_data(opts)) { - print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LD_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } + nfound += diff_ldouble_element(mem1, mem2, elemtno, opts); } /*H5T_NATIVE_LDOUBLE*/ #endif /* H5_SIZEOF_LONG_DOUBLE */ @@ -2320,8 +1350,8 @@ static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t npoints1 = H5Sget_select_elem_npoints(region1_id); npoints2 = H5Sget_select_elem_npoints(region2_id); } H5E_END_TRY; - H5TOOLS_DEBUG("diff_region blocks: 1=%ld-2=%ld", nblocks1, nblocks2); - H5TOOLS_DEBUG("diff_region points: 1=%ld-2=%ld", npoints1, npoints2); + H5TOOLS_DEBUG("blocks: 1=%ld-2=%ld", nblocks1, nblocks2); + H5TOOLS_DEBUG("points: 1=%ld-2=%ld", npoints1, npoints2); if (nblocks1 != nblocks2 || npoints1 != npoints2 || ndims1 != ndims2) { opts->not_cmp = 1; @@ -2369,7 +1399,7 @@ static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t } /* print differences if found */ - if (nfound_b && opts->m_verbose) { + if (nfound_b && opts->mode_verbose) { H5O_info2_t oi1, oi2; char *obj1_str = NULL, *obj2_str = NULL; @@ -2437,7 +1467,7 @@ static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t } } - if (nfound_p && opts->m_verbose) { + if (nfound_p && opts->mode_verbose) { parallel_print("Region points\n"); for (i = 0; i < npoints1; i++) { hsize_t pt1, pt2; @@ -2497,8 +1527,7 @@ done: *------------------------------------------------------------------------- */ -static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u, - int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, const char *obj2, int *ph) +static hsize_t character_compare(char *mem1, char *mem2, hsize_t elemtno, size_t u, diff_opt_t *opts) { hsize_t nfound = 0; /* differences found */ char temp1_uchar; @@ -2506,12 +1535,14 @@ static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u, HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); - H5TOOLS_START_DEBUG(" %d=%d",temp1_uchar,temp2_uchar); + H5TOOLS_START_DEBUG(" %d=%d", temp1_uchar, temp2_uchar); if (temp1_uchar != temp2_uchar) { if (print_data(opts)) { - print_char_pos(ph, 0, i, u, acc, pos, rank, dims, obj1, obj2); - parallel_print(" "); + opts->print_percentage = 0; + opts->print_dims = 1; + print_pos(opts, elemtno, u); + parallel_print(" "); h5diff_print_char(temp1_uchar); parallel_print(" "); h5diff_print_char(temp2_uchar); @@ -2532,1953 +1563,1455 @@ static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u, *------------------------------------------------------------------------- */ -static hsize_t character_compare_opt(unsigned char *mem1, unsigned char *mem2, - hsize_t i, int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, const char *obj2, int *ph) +static hsize_t character_compare_opt(unsigned char *mem1, unsigned char *mem2, hsize_t elemtno, diff_opt_t *opts) { hsize_t nfound = 0; /* differences found */ unsigned char temp1_uchar; unsigned char temp2_uchar; + hbool_t both_zero = FALSE; double per; - hbool_t both_zero; HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); + H5TOOLS_START_DEBUG(" %d=%d", temp1_uchar, temp2_uchar); /* -d and !-p */ - if (opts->d && !opts->p) { + if (opts->delta_bool && !opts->percent_bool) { if (PDIFF(temp1_uchar,temp2_uchar) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elemtno, 0); if (print_data(opts)) { - print_pos(ph, 0, i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); } nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { + else if (!opts->delta_bool && opts->percent_bool) { PER_UNSIGN(signed char, temp1_uchar, temp2_uchar); if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elemtno, 0); if (print_data(opts)) { - print_pos(ph, 1, i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per); } nfound++; } } /* -d and -p */ - else if (opts->d && opts->p) { + else if (opts->delta_bool && opts->percent_bool) { PER_UNSIGN(signed char, temp1_uchar, temp2_uchar); if (per > opts->percent && PDIFF(temp1_uchar,temp2_uchar) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elemtno, 0); if (print_data(opts)) { - print_pos(ph, 1, i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per); } nfound++; } } else if (temp1_uchar != temp2_uchar) { + opts->print_percentage = 0; + print_pos(opts, elemtno, 0); if (print_data(opts)) { - print_pos(ph, 0, i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); } nfound++; } + H5TOOLS_ENDDEBUG(": %d zero:%d", nfound, both_zero); return nfound; } /*------------------------------------------------------------------------- - * Function: diff_float + * Function: diff_float_element * - * Purpose: diff a H5T_NATIVE_FLOAT type + * Purpose: diff a single H5T_NATIVE_FLOAT type * * Return: number of differences found * *------------------------------------------------------------------------- */ -static hsize_t diff_float(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) - +static hsize_t diff_float_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ float temp1_float; float temp2_float; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; hbool_t isnan1 = FALSE; hbool_t isnan2 = FALSE; + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); + + HDmemcpy(&temp1_float, mem1, sizeof(float)); + HDmemcpy(&temp2_float, mem2, sizeof(float)); + + /* logic for detecting NaNs is different with opts -d, -p and no opts */ + /*------------------------------------------------------------------------- * -d and !-p *------------------------------------------------------------------------- */ + if (opts->delta_bool && !opts->percent_bool) { + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if (opts->do_nans) { + isnan1 = HDisnan(temp1_float); + isnan2 = HDisnan(temp2_float); + } - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_float, mem1, sizeof(float)); - HDmemcpy(&temp2_float, mem2, sizeof(float)); - - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_float); - isnan2 = HDisnan(temp2_float); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - if ((double) ABS(temp1_float - temp2_float) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; - } - } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + /* both not NaN, do the comparison */ + if (!isnan1 && !isnan2) { + if ((double) ABS(temp1_float - temp2_float) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); } nfound++; - } - mem1 += sizeof(float); - mem2 += sizeof(float); - if (opts->n && nfound >= opts->count) - return nfound; - } /* i */ + } + /* only one is NaN, assume difference */ + else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); + } + nfound++; + } } /*------------------------------------------------------------------------- - * !-d and -p - *------------------------------------------------------------------------- - */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_float, mem1, sizeof(float)); - HDmemcpy(&temp2_float, mem2, sizeof(float)); - - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_float); - isnan2 = HDisnan(temp2_float); - } - /* both not NaN, do the comparison */ - if ((!isnan1 && !isnan2)) { - PER(temp1_float, temp2_float); + * !-d and -p + *------------------------------------------------------------------------- + */ + else if (!opts->delta_bool && opts->percent_bool) { + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if (opts->do_nans) { + isnan1 = HDisnan(temp1_float); + isnan2 = HDisnan(temp2_float); + } + /* both not NaN, do the comparison */ + if ((!isnan1 && !isnan2)) { + PER(temp1_float, temp2_float); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float, - (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); } + nfound++; } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); + parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float, + (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float)); } nfound++; - } - mem1 += sizeof(float); - mem2 += sizeof(float); - if (opts->n && nfound >= opts->count) - return nfound; - } /* i */ + } + /* only one is NaN, assume difference */ + else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); + } + nfound++; + } } /*------------------------------------------------------------------------- - * -d and -p - *------------------------------------------------------------------------- - */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_float, mem1, sizeof(float)); - HDmemcpy(&temp2_float, mem2, sizeof(float)); - - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_float); - isnan2 = HDisnan(temp2_float); - } + * -d and -p + *------------------------------------------------------------------------- + */ + else if (opts->delta_bool && opts->percent_bool) { + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if (opts->do_nans) { + isnan1 = HDisnan(temp1_float); + isnan2 = HDisnan(temp2_float); + } - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_float, temp2_float); + /* both not NaN, do the comparison */ + if (!isnan1 && !isnan2) { + PER(temp1_float, temp2_float); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; - } - else if (per > opts->percent && (double) ABS(temp1_float - temp2_float) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float, - (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); } - + nfound++; } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + else if (per > opts->percent && (double) ABS(temp1_float - temp2_float) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); + parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float, + (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float)); } nfound++; - } - mem1 += sizeof(float); - mem2 += sizeof(float); - if (opts->n && nfound >= opts->count) - return nfound; - } /* i */ + } + /* only one is NaN, assume difference */ + else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); + } + nfound++; + } } - /*------------------------------------------------------------------------- - * no -d and -p - *------------------------------------------------------------------------- - */ + * no -d and -p + *------------------------------------------------------------------------- + */ else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_float, mem1, sizeof(float)); - HDmemcpy(&temp2_float, mem2, sizeof(float)); - - if (equal_float(temp1_float, temp2_float, opts) == FALSE) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); - } - nfound++; + if (equal_float(temp1_float, temp2_float, opts) == FALSE) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float)); } - - mem1 += sizeof(float); - mem2 += sizeof(float); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + nfound++; + } } + H5TOOLS_ENDDEBUG(": %d zero:%d", nfound, both_zero); return nfound; } /*------------------------------------------------------------------------- - * Function: diff_double + * Function: diff_double_element * - * Purpose: diff a H5T_NATIVE_DOUBLE type + * Purpose: diff a single H5T_NATIVE_DOUBLE type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_double(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) - +static hsize_t diff_double_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ double temp1_double; double temp2_double; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; hbool_t isnan1 = FALSE; hbool_t isnan2 = FALSE; - /*------------------------------------------------------------------------- - * -d and !-p - *------------------------------------------------------------------------- - */ + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_double, mem1, sizeof(double)); - HDmemcpy(&temp2_double, mem2, sizeof(double)); + HDmemcpy(&temp1_double, mem1, sizeof(double)); + HDmemcpy(&temp2_double, mem2, sizeof(double)); - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } + /*------------------------------------------------------------------------- + * -d and !-p + *------------------------------------------------------------------------- + */ + if (opts->delta_bool && !opts->percent_bool) { + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if (opts->do_nans) { + isnan1 = HDisnan(temp1_double); + isnan2 = HDisnan(temp2_double); + } - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - if (ABS(temp1_double-temp2_double) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + /* both not NaN, do the comparison */ + if (!isnan1 && !isnan2) { + if (ABS(temp1_double-temp2_double) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); } nfound++; - } - mem1 += sizeof(double); - mem2 += sizeof(double); - if (opts->n && nfound >= opts->count) - return nfound; - } /* i */ + } + /* only one is NaN, assume difference */ + else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + } + nfound++; + } } /*------------------------------------------------------------------------- - * !-d and -p - *------------------------------------------------------------------------- - */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_double, mem1, sizeof(double)); - HDmemcpy(&temp2_double, mem2, sizeof(double)); - - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_double, temp2_double); + * !-d and -p + *------------------------------------------------------------------------- + */ + else if (!opts->delta_bool && opts->percent_bool) { + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if (opts->do_nans) { + isnan1 = HDisnan(temp1_double); + isnan2 = HDisnan(temp2_double); + } + /* both not NaN, do the comparison */ + if (!isnan1 && !isnan2) { + PER(temp1_double, temp2_double); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P, temp1_double, temp2_double, - ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); } + nfound++; } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + parallel_print(F_FORMAT_P, temp1_double, temp2_double, + ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double)); } nfound++; - } - mem1 += sizeof(double); - mem2 += sizeof(double); - if (opts->n && nfound >= opts->count) - return nfound; - } /* i */ + } + /* only one is NaN, assume difference */ + else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + } + nfound++; + } } /*------------------------------------------------------------------------- - * -d and -p - *------------------------------------------------------------------------- - */ - else if (opts->d && opts->p) { - - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_double, mem1, sizeof(double)); - HDmemcpy(&temp2_double, mem2, sizeof(double)); - - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } + * -d and -p + *------------------------------------------------------------------------- + */ + else if (opts->delta_bool && opts->percent_bool) { + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if (opts->do_nans) { + isnan1 = HDisnan(temp1_double); + isnan2 = HDisnan(temp2_double); + } - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_double, temp2_double); + /* both not NaN, do the comparison */ + if (!isnan1 && !isnan2) { + PER(temp1_double, temp2_double); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - else if (per > opts->percent && ABS(temp1_double-temp2_double) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P, temp1_double, temp2_double, - ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); } + nfound++; } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + else if (per > opts->percent && ABS(temp1_double-temp2_double) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + parallel_print(F_FORMAT_P, temp1_double, temp2_double, + ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double)); } nfound++; } - mem1 += sizeof(double); - mem2 += sizeof(double); - if (opts->n && nfound >= opts->count) - return nfound; - } /* i */ + } + /* only one is NaN, assume difference */ + else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + } + nfound++; + } } /*------------------------------------------------------------------------- - * no -d and -p - *------------------------------------------------------------------------- - */ + * no -d and -p + *------------------------------------------------------------------------- + */ else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_double, mem1, sizeof(double)); - HDmemcpy(&temp2_double, mem2, sizeof(double)); - - if (equal_double(temp1_double, temp2_double, opts) == FALSE) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; + if (equal_double(temp1_double, temp2_double, opts) == FALSE) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); } - - mem1 += sizeof(double); - mem2 += sizeof(double); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + nfound++; + } } + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); return nfound; } /*------------------------------------------------------------------------- - * Function: diff_ldouble + * Function: diff_ldouble_element * - * Purpose: diff a H5T_NATIVE_LDOUBLE type + * Purpose: diff a single H5T_NATIVE_LDOUBLE type * * Return: number of differences found *------------------------------------------------------------------------- */ #if H5_SIZEOF_LONG_DOUBLE !=0 -static hsize_t diff_ldouble(unsigned char *mem1, - unsigned char *mem2, - hsize_t nelmts, - hsize_t hyper_start, - int rank, - hsize_t *dims, - hsize_t *acc, - hsize_t *pos, - diff_opt_t *opts, - const char *obj1, - const char *obj2, - int *ph) - +static hsize_t diff_ldouble_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ long double temp1_double; long double temp2_double; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; hbool_t isnan1 = FALSE; hbool_t isnan2 = FALSE; + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); + + HDmemcpy(&temp1_double, mem1, sizeof(long double)); + HDmemcpy(&temp2_double, mem2, sizeof(long double)); + + /* logic for detecting NaNs is different with options -d, -p and no options */ + /*------------------------------------------------------------------------- * -d and !-p *------------------------------------------------------------------------- */ + if (opts->delta_bool && !opts->percent_bool) { + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if (opts->do_nans) { + isnan1 = HDisnan(temp1_double); + isnan2 = HDisnan(temp2_double); + } - if (opts->d && !opts->p) { - for ( i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_double, mem1, sizeof(long double)); - HDmemcpy(&temp2_double, mem2, sizeof(long double)); - - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } - - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - if (ABS(temp1_double-temp2_double) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + /* both not NaN, do the comparison */ + if (!isnan1 && !isnan2) { + if (ABS(temp1_double-temp2_double) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + parallel_print(LD_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); } nfound++; - } - mem1 += sizeof(long double); - mem2 += sizeof(long double); - if (opts->n && nfound >= opts->count) - return nfound; - } /* i */ + } /* NaN */ + /* only one is NaN, assume difference */ + else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + } + nfound++; + } } - /*------------------------------------------------------------------------- * !-d and -p *------------------------------------------------------------------------- */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_double, mem1, sizeof(long double)); - HDmemcpy(&temp2_double, mem2, sizeof(long double)); + else if (!opts->delta_bool && opts->percent_bool) { + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if (opts->do_nans) { + isnan1 = HDisnan(temp1_double); + isnan2 = HDisnan(temp2_double); + } - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_double, temp2_double); + /* both not NaN, do the comparison */ + if (!isnan1 && !isnan2) { + PER(temp1_double,temp2_double); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P, temp1_double, temp2_double, - ABS(temp1_double - temp2_double), ABS(1-temp2_double / temp1_double)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LD_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); } + nfound++; } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); if (print_data(opts)) { - print_pos(ph, 0, hyper_start+i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + parallel_print(LD_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double)); } nfound++; } - mem1 += sizeof(long double); - mem2 += sizeof(long double); - if (opts->n && nfound >= opts->count) - return nfound; - } /* i */ + } /* NaN */ + /* only one is NaN, assume difference */ + else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + } + nfound++; + } } /*------------------------------------------------------------------------- * -d and -p *------------------------------------------------------------------------- */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_double, mem1, sizeof(long double)); - HDmemcpy(&temp2_double, mem2, sizeof(long double)); - - /*------------------------------------------------------------------------- - * detect NaNs - *------------------------------------------------------------------------- - */ - if (opts->do_nans) { - isnan1 = HDisnan(temp1_double); - isnan2 = HDisnan(temp2_double); - } + else if (opts->delta_bool && opts->percent_bool) { + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if (opts->do_nans) { + isnan1 = HDisnan(temp1_double); + isnan2 = HDisnan(temp2_double); + } - /* both not NaN, do the comparison */ - if (!isnan1 && !isnan2) { - PER(temp1_double, temp2_double); + /* both not NaN, do the comparison */ + if (!isnan1 && !isnan2) { + PER(temp1_double,temp2_double); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - else if (per > opts->percent && ABS(temp1_double - temp2_double) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1-temp2_double / temp1_double)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LD_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); } + nfound++; } - /* only one is NaN, assume difference */ - else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + else if (per > opts->percent && ABS(temp1_double-temp2_double) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LD_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double)); } nfound++; } - mem1 += sizeof(long double); - mem2 += sizeof(long double); - if (opts->n && nfound >= opts->count) - return nfound; - } /* i */ + } /* NaN */ + /* only one is NaN, assume difference */ + else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + } + nfound++; + } } /*------------------------------------------------------------------------- * no -d and -p *------------------------------------------------------------------------- */ - else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_double, mem1, sizeof(long double)); - HDmemcpy(&temp2_double, mem2, sizeof(long double)); - - if (equal_ldouble(temp1_double, temp2_double, opts) == FALSE) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); - } - nfound++; - } - mem1 += sizeof(long double); - mem2 += sizeof(long double); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + else if (equal_ldouble(temp1_double, temp2_double, opts) == FALSE) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LD_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double)); + } + nfound++; } + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); + return nfound; } #endif /* H5_SIZEOF_LONG_DOUBLE */ /*------------------------------------------------------------------------- - * Function: diff_schar + * Function: diff_schar_element * - * Purpose: diff a H5T_NATIVE_SCHAR type + * Purpose: diff a single H5T_NATIVE_SCHAR type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_schar(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) - +static hsize_t diff_schar_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ char temp1_char; char temp2_char; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; - /* -d and !-p */ - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_char, mem1, sizeof(char)); - HDmemcpy(&temp2_char, mem2, sizeof(char)); + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); + HDmemcpy(&temp1_char, mem1, sizeof(char)); + HDmemcpy(&temp2_char, mem2, sizeof(char)); - if (ABS(temp1_char-temp2_char) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); - } - nfound++; + /* -d and !-p */ + if (opts->delta_bool && !opts->percent_bool) { + if (ABS(temp1_char-temp2_char) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); } - mem1 += sizeof(char); - mem2 += sizeof(char); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_char, mem1, sizeof(char)); - HDmemcpy(&temp2_char, mem2, sizeof(char)); + else if (!opts->delta_bool && opts->percent_bool) { + PER(temp1_char, temp2_char); - PER(temp1_char, temp2_char); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per); } - mem1 += sizeof(char); - mem2 += sizeof(char); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* -d and -p */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_char, mem1, sizeof(char)); - HDmemcpy(&temp2_char, mem2, sizeof(char)); - - PER(temp1_char, temp2_char); + else if (opts->delta_bool && opts->percent_bool) { + PER(temp1_char, temp2_char); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); } - else if (per > opts->percent && ABS(temp1_char-temp2_char) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent && ABS(temp1_char - temp2_char) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per); } - mem1 += sizeof(char); - mem2 += sizeof(char); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } - else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_char, mem1, sizeof(char)); - HDmemcpy(&temp2_char, mem2, sizeof(char)); - - if (temp1_char != temp2_char) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); - } - nfound++; - } - - mem1 += sizeof(char); - mem2 += sizeof(char); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + else if (temp1_char != temp2_char) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char)); + } + nfound++; } + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); + return nfound; } /*------------------------------------------------------------------------- - * Function: diff_uchar + * Function: diff_uchar_element * - * Purpose: diff a H5T_NATIVE_UCHAR type + * Purpose: diff a single H5T_NATIVE_UCHAR type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_uchar(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) +static hsize_t diff_uchar_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ unsigned char temp1_uchar; unsigned char temp2_uchar; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; - /* -d and !-p */ - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); - HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); - if (PDIFF(temp1_uchar,temp2_uchar) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); - } - nfound++; + HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); + HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); + /* -d and !-p */ + if (opts->delta_bool && !opts->percent_bool) { + if (PDIFF(temp1_uchar, temp2_uchar) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); } - mem1 += sizeof(unsigned char); - mem2 += sizeof(unsigned char); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); - HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); - - PER_UNSIGN(signed char, temp1_uchar, temp2_uchar); + else if (!opts->delta_bool && opts->percent_bool) { + PER_UNSIGN(signed char, temp1_uchar, temp2_uchar); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per); } - mem1 += sizeof(unsigned char); - mem2 += sizeof(unsigned char); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* -d and -p */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); - HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); - - PER_UNSIGN(signed char, temp1_uchar, temp2_uchar); + else if (opts->delta_bool && opts->percent_bool) { + PER_UNSIGN(signed char, temp1_uchar, temp2_uchar); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); } - else if (per > opts->percent && PDIFF(temp1_uchar,temp2_uchar) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent && PDIFF(temp1_uchar, temp2_uchar) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per); } - mem1 += sizeof(unsigned char); - mem2 += sizeof(unsigned char); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } - else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); - HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); - - if (temp1_uchar != temp2_uchar) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); - } - nfound++; - } - - mem1 += sizeof(unsigned char); - mem2 += sizeof(unsigned char); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + else if (temp1_uchar != temp2_uchar) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar)); + } + nfound++; } + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); + return nfound; } /*------------------------------------------------------------------------- - * Function: diff_short + * Function: diff_short_element * * Purpose: diff a H5T_NATIVE_SHORT type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_short(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) +static hsize_t diff_short_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ short temp1_short; short temp2_short; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; - /* -d and !-p */ - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_short, mem1, sizeof(short)); - HDmemcpy(&temp2_short, mem2, sizeof(short)); + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); - if (ABS(temp1_short-temp2_short) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); - } - nfound++; + HDmemcpy(&temp1_short, mem1, sizeof(short)); + HDmemcpy(&temp2_short, mem2, sizeof(short)); + /* -d and !-p */ + if (opts->delta_bool && !opts->percent_bool) { + if (ABS(temp1_short - temp2_short) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); } - mem1 += sizeof(short); - mem2 += sizeof(short); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_short, mem1, sizeof(short)); - HDmemcpy(&temp2_short, mem2, sizeof(short)); - - PER(temp1_short, temp2_short); + else if (!opts->delta_bool && opts->percent_bool) { + PER(temp1_short, temp2_short); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per); } - mem1 += sizeof(short); - mem2 += sizeof(short); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* -d and -p */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_short, mem1, sizeof(short)); - HDmemcpy(&temp2_short, mem2, sizeof(short)); - - PER(temp1_short, temp2_short); + else if (opts->delta_bool && opts->percent_bool) { + PER(temp1_short, temp2_short); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); } - else if (per > opts->percent && ABS(temp1_short-temp2_short) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent && ABS(temp1_short - temp2_short) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per); } - mem1 += sizeof(short); - mem2 += sizeof(short); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } - else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_short, mem1, sizeof(short)); - HDmemcpy(&temp2_short, mem2, sizeof(short)); - - if (temp1_short != temp2_short) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); - } - nfound++; - } - - mem1 += sizeof(short); - mem2 += sizeof(short); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + else if (temp1_short != temp2_short) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short)); + } + nfound++; } + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); + return nfound; } /*------------------------------------------------------------------------- - * Function: diff_ushort + * Function: diff_ushort_element * - * Purpose: diff a H5T_NATIVE_USHORT type + * Purpose: diff a single H5T_NATIVE_USHORT type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_ushort(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) - +static hsize_t diff_ushort_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ unsigned short temp1_ushort; unsigned short temp2_ushort; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; - /* -d and !-p */ - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short)); - HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short)); + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); - if (PDIFF(temp1_ushort,temp2_ushort) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); - } - nfound++; + HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short)); + HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short)); + /* -d and !-p */ + if (opts->delta_bool && !opts->percent_bool) { + if (PDIFF(temp1_ushort, temp2_ushort) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); } - mem1 += sizeof(unsigned short); - mem2 += sizeof(unsigned short); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short)); - HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short)); + else if (!opts->delta_bool && opts->percent_bool) { + PER_UNSIGN(signed short, temp1_ushort, temp2_ushort); - PER_UNSIGN(signed short, temp1_ushort, temp2_ushort); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per); } - mem1 += sizeof(unsigned short); - mem2 += sizeof(unsigned short); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* -d and -p */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short)); - HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short)); - - PER_UNSIGN(signed short, temp1_ushort, temp2_ushort); + else if (opts->delta_bool && opts->percent_bool) { + PER_UNSIGN(signed short, temp1_ushort, temp2_ushort); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); } - else if (per > opts->percent && PDIFF(temp1_ushort,temp2_ushort) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent && PDIFF(temp1_ushort, temp2_ushort) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per); } - mem1 += sizeof(unsigned short); - mem2 += sizeof(unsigned short); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } - else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short)); - HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short)); - - if (temp1_ushort != temp2_ushort) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); - } - nfound++; - } - - mem1 += sizeof(unsigned short); - mem2 += sizeof(unsigned short); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + else if (temp1_ushort != temp2_ushort) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort)); + } + nfound++; } + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); + return nfound; } /*------------------------------------------------------------------------- - * Function: diff_int + * Function: diff_int_element * - * Purpose: diff a H5T_NATIVE_INT type + * Purpose: diff a single H5T_NATIVE_INT type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_int(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) +static hsize_t diff_int_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ int temp1_int; int temp2_int; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; - /* -d and !-p */ - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_int, mem1, sizeof(int)); - HDmemcpy(&temp2_int, mem2, sizeof(int)); + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); - if (ABS(temp1_int-temp2_int) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); - } - nfound++; + HDmemcpy(&temp1_int, mem1, sizeof(int)); + HDmemcpy(&temp2_int, mem2, sizeof(int)); + /* -d and !-p */ + if (opts->delta_bool && !opts->percent_bool) { + if (ABS(temp1_int-temp2_int) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); } - mem1 += sizeof(int); - mem2 += sizeof(int); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_int, mem1, sizeof(int)); - HDmemcpy(&temp2_int, mem2, sizeof(int)); - - PER(temp1_int, temp2_int); + else if (!opts->delta_bool && opts->percent_bool) { + PER(temp1_int, temp2_int); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per); } - mem1 += sizeof(int); - mem2 += sizeof(int); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* -d and -p */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_int, mem1, sizeof(int)); - HDmemcpy(&temp2_int, mem2, sizeof(int)); - - PER(temp1_int, temp2_int); + else if (opts->delta_bool && opts->percent_bool) { + PER(temp1_int, temp2_int); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); } - else if (per > opts->percent && ABS(temp1_int-temp2_int) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent && ABS(temp1_int - temp2_int) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per); } - mem1 += sizeof(int); - mem2 += sizeof(int); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } - else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_int, mem1, sizeof(int)); - HDmemcpy(&temp2_int, mem2, sizeof(int)); - - if (temp1_int != temp2_int) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); - } - nfound++; - } + else if (temp1_int != temp2_int) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int)); + } + nfound++; + } - mem1 += sizeof(int); - mem2 += sizeof(int); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); - } return nfound; } /*------------------------------------------------------------------------- - * Function: diff_uint + * Function: diff_uint_element * - * Purpose: diff a H5T_NATIVE_UINT type + * Purpose: diff a single H5T_NATIVE_UINT type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_uint(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) +static hsize_t diff_uint_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ unsigned int temp1_uint; unsigned int temp2_uint; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; - /* -d and !-p */ - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int)); - HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int)); + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); - if (PDIFF(temp1_uint,temp2_uint) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); - } - nfound++; + HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int)); + HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int)); + /* -d and !-p */ + if (opts->delta_bool && !opts->percent_bool) { + if (PDIFF(temp1_uint, temp2_uint) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(UI_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); } - mem1 += sizeof(unsigned int); - mem2 += sizeof(unsigned int); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int)); - HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int)); - - PER_UNSIGN(signed int, temp1_uint, temp2_uint); + else if (!opts->delta_bool && opts->percent_bool) { + PER_UNSIGN(signed int, temp1_uint, temp2_uint); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(UI_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(UI_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per); } - mem1 += sizeof(unsigned int); - mem2 += sizeof(unsigned int); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* -d and -p */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int)); - HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int)); - - PER_UNSIGN(signed int, temp1_uint, temp2_uint); + else if (opts->delta_bool && opts->percent_bool) { + PER_UNSIGN(signed int, temp1_uint, temp2_uint); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(UI_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); } - else if (per > opts->percent - && PDIFF(temp1_uint,temp2_uint) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent && PDIFF(temp1_uint,temp2_uint) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(UI_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per); } - mem1 += sizeof(unsigned int); - mem2 += sizeof(unsigned int); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } - else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int)); - HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int)); - - if (temp1_uint != temp2_uint) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(I_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); - } - nfound++; - } - - mem1 += sizeof(unsigned int); - mem2 += sizeof(unsigned int); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + else if (temp1_uint != temp2_uint) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(UI_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint)); + } + nfound++; } + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); + return nfound; } /*------------------------------------------------------------------------- - * Function: diff_long + * Function: diff_long_element * - * Purpose: diff a H5T_NATIVE_LONG type + * Purpose: diff a single H5T_NATIVE_LONG type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_long(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) +static hsize_t diff_long_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ long temp1_long; long temp2_long; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; - /* -d and !-p */ - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_long, mem1, sizeof(long)); - HDmemcpy(&temp2_long, mem2, sizeof(long)); + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); - if (ABS(temp1_long-temp2_long) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); - } - nfound++; - } - mem1 += sizeof(long); - mem2 += sizeof(long); - if (opts->n && nfound >= opts->count) - return nfound; + HDmemcpy(&temp1_long, mem1, sizeof(long)); + HDmemcpy(&temp2_long, mem2, sizeof(long)); + /* -d and !-p */ + if (opts->delta_bool && !opts->percent_bool) { + if (ABS(temp1_long-temp2_long) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); } + nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_long, mem1, sizeof(long)); - HDmemcpy(&temp2_long, mem2, sizeof(long)); - - PER(temp1_long, temp2_long); + else if (!opts->delta_bool && opts->percent_bool) { + PER(temp1_long, temp2_long); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per); } - mem1 += sizeof(long); - mem2 += sizeof(long); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* -d and -p */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_long, mem1, sizeof(long)); - HDmemcpy(&temp2_long, mem2, sizeof(long)); - - PER(temp1_long, temp2_long); + else if (opts->delta_bool && opts->percent_bool) { + PER(temp1_long, temp2_long); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); } - else if (per > opts->percent && ABS(temp1_long-temp2_long) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent && ABS(temp1_long-temp2_long) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per); } - mem1 += sizeof(long); - mem2 += sizeof(long); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } - else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_long, mem1, sizeof(long)); - HDmemcpy(&temp2_long, mem2, sizeof(long)); - - if (temp1_long != temp2_long) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); - } - nfound++; - } - - mem1 += sizeof(long); - mem2 += sizeof(long); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + else if (temp1_long != temp2_long) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long)); + } + nfound++; } + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); + return nfound; } /*------------------------------------------------------------------------- - * Function: diff_ulong + * Function: diff_ulong_element * - * Purpose: diff a H5T_NATIVE_ULONG type + * Purpose: diff a single H5T_NATIVE_ULONG type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_ulong(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) +static hsize_t diff_ulong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ unsigned long temp1_ulong; unsigned long temp2_ulong; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; - /* -d and !-p */ - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long)); - HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long)); + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); - if (PDIFF(temp1_ulong,temp2_ulong) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); - } - nfound++; - } - mem1 += sizeof(unsigned long); - mem2 += sizeof(unsigned long); - if (opts->n && nfound >= opts->count) - return nfound; + HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long)); + HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long)); + /* -d and !-p */ + if (opts->delta_bool && !opts->percent_bool) { + if (PDIFF(temp1_ulong, temp2_ulong) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); } + nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long)); - HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long)); - - PER_UNSIGN(signed long, temp1_ulong, temp2_ulong); + else if (!opts->delta_bool && opts->percent_bool) { + PER_UNSIGN(signed long, temp1_ulong, temp2_ulong); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per); } - mem1 += sizeof(unsigned long); - mem2 += sizeof(unsigned long); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* -d and -p */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long)); - HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long)); + else if (opts->delta_bool && opts->percent_bool) { + PER_UNSIGN(signed long, temp1_ulong, temp2_ulong); - PER_UNSIGN(signed long, temp1_ulong, temp2_ulong); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); } - else if (per > opts->percent - && PDIFF(temp1_ulong,temp2_ulong) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per); - } - nfound++; + nfound++; + } + else if (per > opts->percent && PDIFF(temp1_ulong,temp2_ulong) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per); } - mem1 += sizeof(unsigned long); - mem2 += sizeof(unsigned long); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } - else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long)); - HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long)); - - if (temp1_ulong != temp2_ulong) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); - } - nfound++; - } - - mem1 += sizeof(unsigned long); - mem2 += sizeof(unsigned long); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + else if (temp1_ulong != temp2_ulong) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong)); + } + nfound++; } + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); + return nfound; } /*------------------------------------------------------------------------- - * Function: diff_llong + * Function: diff_llong_element * - * Purpose: diff a H5T_NATIVE_LLONG type + * Purpose: diff a single H5T_NATIVE_LLONG type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_llong(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, - hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, - const char *obj2, int *ph) +static hsize_t diff_llong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ long long temp1_llong; long long temp2_llong; - hsize_t i; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; - /* -d and !-p */ - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_llong, mem1, sizeof(long long)); - HDmemcpy(&temp2_llong, mem2, sizeof(long long)); + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); - if (ABS( temp1_llong-temp2_llong) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LLI_FORMAT, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong)); - } - nfound++; + HDmemcpy(&temp1_llong, mem1, sizeof(long long)); + HDmemcpy(&temp2_llong, mem2, sizeof(long long)); + + /* -d and !-p */ + if (opts->delta_bool && !opts->percent_bool) { + if (ABS( temp1_llong-temp2_llong) > opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LLI_FORMAT, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong)); } - mem1 += sizeof(long long); - mem2 += sizeof(long long); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_llong, mem1, sizeof(long long)); - HDmemcpy(&temp2_llong, mem2, sizeof(long long)); - - PER(temp1_llong, temp2_llong); + else if (!opts->delta_bool && opts->percent_bool) { + PER(temp1_llong, temp2_llong); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { parallel_print(LLI_FORMAT_P_NOTCOMP, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong)); } nfound++; } else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); parallel_print(LLI_FORMAT_P, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong),per); } nfound++; } - mem1 += sizeof(long long); - mem2 += sizeof(long long); - if (opts->n && nfound >= opts->count) - return nfound; - } } /* -d and -p */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_llong, mem1, sizeof(long long)); - HDmemcpy(&temp2_llong, mem2, sizeof(long long)); - - PER(temp1_llong, temp2_llong); + else if (opts->delta_bool && opts->percent_bool) { + PER(temp1_llong, temp2_llong); - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LLI_FORMAT_P_NOTCOMP, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong)); - } - nfound++; + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LLI_FORMAT_P_NOTCOMP, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong)); } - else if (per > opts->percent - && ABS(temp1_llong-temp2_llong) > opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LLI_FORMAT_P, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong),per); - } - nfound++; + nfound++; + } + else if (per > opts->percent && ABS(temp1_llong-temp2_llong) > opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LLI_FORMAT_P, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong),per); } - mem1 += sizeof(long long); - mem2 += sizeof(long long); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_llong, mem1, sizeof(long long)); - HDmemcpy(&temp2_llong, mem2, sizeof(long long)); - - if (temp1_llong != temp2_llong) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(LLI_FORMAT, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong)); - } - nfound++; + if (temp1_llong != temp2_llong) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(LLI_FORMAT, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong)); } - - mem1 += sizeof(long long); - mem2 += sizeof(long long); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + nfound++; + } } + H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat); + return nfound; } /*------------------------------------------------------------------------- - * Function: diff_ullong + * Function: diff_ullong_element * - * Purpose: diff a H5T_NATIVE_ULLONG type + * Purpose: diff a single H5T_NATIVE_ULLONG type * * Return: number of differences found *------------------------------------------------------------------------- */ -static hsize_t diff_ullong(unsigned char *mem1, unsigned char *mem2, - hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, hsize_t *acc, - hsize_t *pos, diff_opt_t *opts, const char *obj1, const char *obj2, int *ph) - +static hsize_t diff_ullong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts) { hsize_t nfound = 0; /* number of differences found */ unsigned long long temp1_ullong; unsigned long long temp2_ullong; - hsize_t i; float f1, f2; double per; - hbool_t both_zero; + hbool_t both_zero = FALSE; - /* -d and !-p */ - if (opts->d && !opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ullong, mem1, sizeof(unsigned long long)); - HDmemcpy(&temp2_ullong, mem2, sizeof(unsigned long long)); + H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool); - if (PDIFF(temp1_ullong,temp2_ullong) > (unsigned long long) opts->delta) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULLI_FORMAT,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong)); - } - nfound++; + HDmemcpy(&temp1_ullong, mem1, sizeof(unsigned long long)); + HDmemcpy(&temp2_ullong, mem2, sizeof(unsigned long long)); + + /* -d and !-p */ + if (opts->delta_bool && !opts->percent_bool) { + if (PDIFF(temp1_ullong,temp2_ullong) > (unsigned long long) opts->delta) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULLI_FORMAT, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong, temp2_ullong)); } - mem1 += sizeof(unsigned long long); - mem2 += sizeof(unsigned long long); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* !-d and -p */ - else if (!opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ullong, mem1, sizeof(unsigned long long)); - HDmemcpy(&temp2_ullong, mem2, sizeof(unsigned long long)); - - ull2float(temp1_ullong, &f1); - ull2float(temp2_ullong, &f2); - PER(f1, f2); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULLI_FORMAT_P_NOTCOMP,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong)); - } - nfound++; + else if (!opts->delta_bool && opts->percent_bool) { + ull2float(temp1_ullong, &f1); + ull2float(temp2_ullong, &f2); + PER(f1, f2); + + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULLI_FORMAT_P_NOTCOMP, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong, temp2_ullong)); } - else if (per > opts->percent) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULLI_FORMAT_P,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong),per); - } - nfound++; + nfound++; + } + else if (per > opts->percent) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULLI_FORMAT_P, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong,temp2_ullong), per); } - mem1 += sizeof(unsigned long long); - mem2 += sizeof(unsigned long long); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } /* -d and -p */ - else if (opts->d && opts->p) { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ullong, mem1, sizeof(unsigned long long)); - HDmemcpy(&temp2_ullong, mem2, sizeof(unsigned long long)); - - ull2float(temp1_ullong, &f1); - ull2float(temp2_ullong, &f2); - PER(f1, f2); - - if (not_comparable && !both_zero) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULLI_FORMAT_P_NOTCOMP,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong)); - } - nfound++; + else if (opts->delta_bool && opts->percent_bool) { + ull2float(temp1_ullong, &f1); + ull2float(temp2_ullong, &f2); + PER(f1, f2); + + if (not_comparable && !both_zero) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULLI_FORMAT_P_NOTCOMP, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong, temp2_ullong)); } - else if (per > opts->percent - && PDIFF(temp1_ullong,temp2_ullong) > (unsigned long long) opts->delta) { - if (print_data(opts)) { - print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULLI_FORMAT_P,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong),per); - } - nfound++; + nfound++; + } + else if (per > opts->percent && PDIFF(temp1_ullong,temp2_ullong) > (unsigned long long) opts->delta) { + opts->print_percentage = 1; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULLI_FORMAT_P, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong, temp2_ullong), per); } - mem1 += sizeof(unsigned long long); - mem2 += sizeof(unsigned long long); - if (opts->n && nfound >= opts->count) - return nfound; + nfound++; } } else { - for (i = 0; i < nelmts; i++) { - HDmemcpy(&temp1_ullong, mem1, sizeof(unsigned long long)); - HDmemcpy(&temp2_ullong, mem2, sizeof(unsigned long long)); - - if (temp1_ullong != temp2_ullong) { - if (print_data(opts)) { - print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2); - parallel_print(SPACES); - parallel_print(ULLI_FORMAT,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong)); - } - nfound++; + if (temp1_ullong != temp2_ullong) { + opts->print_percentage = 0; + print_pos(opts, elem_idx, 0); + if (print_data(opts)) { + parallel_print(ULLI_FORMAT, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong, temp2_ullong)); } - - mem1 += sizeof(unsigned long long); - mem2 += sizeof(unsigned long long); - if (opts->n && nfound >= opts->count) - return nfound; - } /* nelmts */ + nfound++; + } } + H5TOOLS_ENDDEBUG(": %d zero:%d", nfound, both_zero); return nfound; } @@ -4681,7 +3214,7 @@ static hbool_t equal_float(float value, float expected, diff_opt_t *opts) { static int print_data(diff_opt_t *opts) { - return ((opts->m_report || opts->m_verbose) && !opts->m_quiet) ? 1 : 0; + return ((opts->mode_report || opts->mode_verbose) && !opts->mode_quiet) ? 1 : 0; } /*------------------------------------------------------------------------- @@ -4691,25 +3224,24 @@ int print_data(diff_opt_t *opts) *------------------------------------------------------------------------- */ static -void print_header(int pp, /* print percentage */ - int rank, hsize_t *dims, const char *obj1, const char *obj2) +void print_header(diff_opt_t *opts) { /* print header */ parallel_print("%-16s", "size:"); - print_dimensions(rank, dims); + print_dimensions(opts->rank, opts->dims); parallel_print("%-11s", ""); - print_dimensions(rank, dims); + print_dimensions(opts->rank, opts->dims); parallel_print("\n"); - if (pp) { + if (opts->print_percentage) { parallel_print("%-15s %-15s %-15s %-15s %-15s\n", "position", - (obj1 != NULL) ? obj1 : " ", (obj2 != NULL) ? obj2 : " ", "difference", "relative"); + opts->obj_name[0], opts->obj_name[1], "difference", "relative"); parallel_print( "------------------------------------------------------------------------\n"); } else { parallel_print("%-15s %-15s %-15s %-20s\n", "position", - (obj1 != NULL) ? obj1 : " ", (obj2 != NULL) ? obj2 : " ", "difference"); + opts->obj_name[0], opts->obj_name[1], "difference"); parallel_print( "------------------------------------------------------------\n"); } @@ -4722,77 +3254,94 @@ void print_header(int pp, /* print percentage */ *------------------------------------------------------------------------- */ static -void print_pos(int *ph, /* print header */ - int pp, /* print percentage */ - hsize_t curr_pos, hsize_t *acc, hsize_t *pos, int rank, hsize_t *dims, - const char *obj1, const char *obj2) +void print_pos(diff_opt_t *opts, hsize_t idx, size_t u) { - int i; - - /* print header */ - if (*ph == 1) { - *ph = 0; - - print_header(pp, rank, dims, obj1, obj2); - } /* end print header */ - - for (i = 0; i < rank; i++) { - pos[i] = curr_pos / acc[i]; - curr_pos -= acc[i] * pos[i]; - } - HDassert(curr_pos == 0); + int i,j; + + H5TOOLS_START_DEBUG(" -- idx:%ld", idx); + + if (print_data(opts)) { + /* print header */ + if (opts->print_header == 1) { + opts->print_header = 0; + + print_header(opts); + } /* end print header */ + + H5TOOLS_DEBUG("rank=%d", opts->rank); + if(opts->rank > 0) { + hsize_t curr_pos = idx; + + parallel_print("[ "); + H5TOOLS_DEBUG("do calc_acc_pos[%ld] nelmts:%d - errstat:%d", i, opts->hs_nelmts, opts->err_stat); + + if (opts->sset[0] != NULL) { + /* Subsetting is used - calculate total position */ + hsize_t elmnt_cnt = 1; + hsize_t dim_cnt = 0; /* previous dim size */ + hsize_t str_cnt = 0; /* previous dim stride */ + hsize_t curr_idx = idx; /* calculated running position */ + hsize_t str_idx = 0; + hsize_t blk_idx = 0; + hsize_t cnt_idx = 0; + hsize_t hs_idx = 0; + j = opts->rank-1; + do { + cnt_idx = opts->sset[0]->count.data[j]; /* Count value for current dim */ + H5TOOLS_DEBUG("... sset loop:%d with curr_pos:%ld (curr_idx:%ld) - count:%ld", j, curr_pos, curr_idx, cnt_idx); + blk_idx = opts->sset[0]->block.data[j]; /* Block value for current dim */ + H5TOOLS_DEBUG("... sset loop:%d with curr_pos:%ld (curr_idx:%ld) - block:%ld", j, curr_pos, curr_idx, blk_idx); + hs_idx = cnt_idx * blk_idx; /* hyperslab area value for current dim */ + H5TOOLS_DEBUG("... sset loop:%d with curr_pos:%ld (curr_idx:%ld) - hs:%ld", j, curr_pos, curr_idx, hs_idx); + str_idx = opts->sset[0]->stride.data[j]; /* Stride value for current dim */ + H5TOOLS_DEBUG("... sset loop:%d with curr_pos:%ld (curr_idx:%ld) - stride:%ld", j, curr_pos, curr_idx, str_idx); + elmnt_cnt *= opts->dims[j]; /* Total number of elements in dimension */ + H5TOOLS_DEBUG("... sset loop:%d with elmnt_cnt:%ld", j, elmnt_cnt); + if (str_idx > blk_idx) + curr_idx += dim_cnt * (str_idx - blk_idx); /* */ + else if (curr_idx >= hs_idx) + curr_idx += dim_cnt * str_cnt; + H5TOOLS_DEBUG("... sset loop:%d with idx:%ld (curr_idx:%ld) - stride:%ld", j, idx, curr_idx, str_idx); + dim_cnt = elmnt_cnt; /* */ + if (str_idx > blk_idx) + str_cnt = str_idx - blk_idx; /* */ + else + str_cnt = str_idx; /* */ + H5TOOLS_DEBUG("... sset loop:%d with dim_cnt:%ld - str_cnt:%ld", j, dim_cnt, str_cnt); + j--; + } while (curr_idx >= elmnt_cnt && j >= 0); + curr_pos = curr_idx; /* New current position */ + H5TOOLS_DEBUG("pos loop:%d,%d with elmnt_cnt:%ld - curr_pos:%ld", i, j, elmnt_cnt, curr_pos); + } /* if (opts->sset[0] != NULL) */ + /* + * Calculate the number of elements represented by a unit change in a + * certain index position. + */ + calc_acc_pos((unsigned)opts->rank, curr_pos, opts->acc, opts->pos); - if (rank > 0) { - parallel_print("[ "); - for (i = 0; i < rank; i++) { - parallel_print(HSIZE_T_FORMAT, (unsigned long long)pos[i]); - parallel_print(" "); + for (i = 0; i < opts->rank; i++) { + H5TOOLS_DEBUG("pos loop:%d with opts->pos=%ld opts->sm_pos=%ld", i, opts->pos[i], opts->sm_pos[i]); + opts->pos[i] += (unsigned long) opts->sm_pos[i]; + H5TOOLS_DEBUG("pos loop:%d with opts->pos=%ld", i, opts->pos[i]); + parallel_print(HSIZE_T_FORMAT, (unsigned long long)opts->pos[i]); + parallel_print(" "); + } + parallel_print("]"); } - parallel_print("]"); - } - else - parallel_print(" "); -} - -/*------------------------------------------------------------------------- - * Function: print_char_pos - * - * Purpose: print character position in string - *------------------------------------------------------------------------- - */ -static -void print_char_pos(int *ph, /* print header */ - int pp, /* print percentage */ - hsize_t curr_pos, size_t u, hsize_t *acc, hsize_t *pos, int rank, hsize_t *dims, - const char *obj1, const char *obj2) -{ - int i; - - /* print header */ - if (*ph == 1) { - *ph = 0; - - print_header(pp, rank, dims, obj1, obj2); - } /* end print header */ - - for (i = 0; i < rank; i++) { - pos[i] = curr_pos / acc[i]; - curr_pos -= acc[i] * pos[i]; - } - HDassert(curr_pos == 0); - - parallel_print("[ "); - if (rank > 0) { - for (i = 0; i < rank; i++) { - parallel_print(HSIZE_T_FORMAT, (unsigned long long)pos[i]); - parallel_print(" "); + else { + if (opts->print_dims) { + parallel_print("[ "); + parallel_print("%zu", u); + parallel_print("]"); + opts->print_dims = 0; + } + else + parallel_print(" "); } - + parallel_print(SPACES); } - else - parallel_print("%zu", u); - parallel_print("]"); + H5TOOLS_ENDDEBUG(""); } /*------------------------------------------------------------------------- diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c index 5ad29fc..b7ec2e8 100644 --- a/tools/lib/h5diff_attr.c +++ b/tools/lib/h5diff_attr.c @@ -137,7 +137,7 @@ static void table_attr_mark_exist(unsigned *exist, char *name, table_attrs_t *ta * Parameter: * table_out [OUT] : return the list *------------------------------------------------------------------------*/ -static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t ** table_out, diff_opt_t *opts) +static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t ** table_out, diff_opt_t *opts) { table_attrs_t *table_lp = NULL; H5O_info2_t oinfo1, oinfo2; /* Object info */ @@ -171,8 +171,8 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t * build the list */ while(curr1 < oinfo1.num_attrs && curr2 < oinfo2.num_attrs) { - H5TOOLS_DEBUG("build_match_list_attrs 1: %ld - %ld", curr1, oinfo1.num_attrs); - H5TOOLS_DEBUG("build_match_list_attrs 2: %ld - %ld", curr2, oinfo2.num_attrs); + H5TOOLS_DEBUG("list_attrs 1: %ld - %ld", curr1, oinfo1.num_attrs); + H5TOOLS_DEBUG("list_attrs 2: %ld - %ld", curr2, oinfo2.num_attrs); /*------------------ * open attribute1 */ @@ -226,7 +226,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t infile[0] = 1; infile[1] = 0; while(curr1 < oinfo1.num_attrs) { - H5TOOLS_DEBUG("build_match_list_attrs 1: %ld - %ld", curr1, oinfo1.num_attrs); + H5TOOLS_DEBUG("list_attrs 1: %ld - %ld", curr1, oinfo1.num_attrs); /*------------------ * open attribute1 */ @@ -235,7 +235,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t /* get name */ if(H5Aget_name(attr1_id, (size_t)ATTR_NAME_MAX, name1) < 0) H5TOOLS_GOTO_ERROR(FAIL, "H5Aget_name first attribute failed"); - H5TOOLS_DEBUG("build_match_list_attrs #1 name - %s", name1); + H5TOOLS_DEBUG("list_attrs 1 name - %s", name1); table_attr_mark_exist(infile, name1, table_lp); table_lp->nattrs_only1++; @@ -250,7 +250,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t infile[0] = 0; infile[1] = 1; while(curr2 < oinfo2.num_attrs) { - H5TOOLS_DEBUG("build_match_list_attrs 2: %ld - %ld", curr2, oinfo2.num_attrs); + H5TOOLS_DEBUG("list_attrs 2: %ld - %ld", curr2, oinfo2.num_attrs); /*------------------ * open attribute2 */ if((attr2_id = H5Aopen_by_idx(loc2_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)curr2, H5P_DEFAULT, H5P_DEFAULT)) < 0) @@ -258,7 +258,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t /* get name */ if(H5Aget_name(attr2_id, (size_t)ATTR_NAME_MAX, name2) < 0) H5TOOLS_GOTO_ERROR(FAIL, "H5Aget_name second attribute failed"); - H5TOOLS_DEBUG("build_match_list_attrs #2 name - %s", name2); + H5TOOLS_DEBUG("list_attrs 2 name - %s", name2); table_attr_mark_exist(infile, name2, table_lp); table_lp->nattrs_only2++; @@ -272,7 +272,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t /*------------------------------------------------------ * print the list */ - if(opts->m_verbose_level == 2) { + if(opts->mode_verbose_level == 2) { /* if '-v2' is detected */ parallel_print(" obj1 obj2\n"); parallel_print(" --------------------------------------\n"); @@ -284,7 +284,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t } /* end for */ } - if(opts->m_verbose_level >= 1) + if(opts->mode_verbose_level >= 1) parallel_print("Attributes status: %d common, %d only in obj1, %d only in obj2\n", table_lp->nattrs - table_lp->nattrs_only1 - table_lp->nattrs_only2, table_lp->nattrs_only1, table_lp->nattrs_only2); @@ -313,7 +313,8 @@ done: *------------------------------------------------------------------------- */ -hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const char *name2, const char *path1, const char *path2, diff_opt_t *opts) +hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, + const char *name1, const char *name2, const char *path1, const char *path2, diff_opt_t *opts) { hid_t space1_id = H5I_INVALID_HID; /* space ID */ hid_t space2_id = H5I_INVALID_HID; /* space ID */ @@ -327,19 +328,15 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const void *buf2 = NULL; /* data buffer */ hbool_t buf1hasdata = FALSE; /* buffer has data */ hbool_t buf2hasdata = FALSE; /* buffer has data */ - hsize_t nelmts1; /* number of elements in dataset */ int rank1; /* rank of dataset */ int rank2; /* rank of dataset */ hsize_t dims1[H5S_MAX_RANK]; /* dimensions of dataset */ hsize_t dims2[H5S_MAX_RANK]; /* dimensions of dataset */ - char np1[512]; - char np2[512]; hsize_t nfound = 0; int j; diff_err_t ret_value = opts->err_stat; H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); - /* get the datatypes */ if((ftype1_id = H5Aget_type(attr1_id)) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Aget_type first attribute failed"); @@ -383,11 +380,30 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const * check for comparable TYPE and SPACE *---------------------------------------------------------------------- */ - H5TOOLS_DEBUG("diff_attr_data check for comparable TYPE and SPACE"); + H5TOOLS_DEBUG("Check for comparable TYPE and SPACE"); + + H5TOOLS_DEBUG("attr_names: %s - %s", name1, name2); + if (name1) { + j = (int)HDstrlen(name1); + H5TOOLS_DEBUG("attr1_name: %s - %d", name1, j); + if (j > 0) { + opts->obj_name[0] = (char *)HDmalloc((size_t)j + 1); + HDstrncpy(opts->obj_name[0], name1, (size_t)j + 1); + } + } + if (name2) { + j = (int)HDstrlen(name2); + H5TOOLS_DEBUG("attr2_name: %s - %d", name2, j); + if (j > 0) { + opts->obj_name[1] = (char *)HDmalloc((size_t)j + 1); + HDstrncpy(opts->obj_name[1], name2, (size_t)j + 1); + } + } + H5TOOLS_DEBUG("attr_names: %s - %s", opts->obj_name[0], opts->obj_name[1]); /* pass dims1 and dims2 for maxdims as well since attribute's maxdims * are always same */ - if(diff_can_type(ftype1_id, ftype2_id, rank1, rank2, dims1, dims2, dims1, dims2, name1, name2, opts, 0) == 1) { + if(diff_can_type(ftype1_id, ftype2_id, rank1, rank2, dims1, dims2, dims1, dims2, opts, 0) == 1) { /*----------------------------------------------------------------- * "upgrade" the smaller memory size *------------------------------------------------------------------ @@ -395,17 +411,26 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const if(FAIL == match_up_memsize(ftype1_id, ftype2_id, &mtype1_id, &mtype2_id, &msize1, &msize2)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "match_up_memsize failed"); - H5TOOLS_DEBUG("diff_attr_data read"); + H5TOOLS_DEBUG("initialize read"); /*--------------------------------------------------------------------- - * read + * initialize diff_opt_t structure for dimensions *---------------------------------------------------------------------- */ - nelmts1 = 1; - for(j = 0; j < rank1; j++) - nelmts1 *= dims1[j]; + opts->nelmts = 1; + for(j = 0; j < rank1; j++) { + opts->dims[j] = dims1[j]; + opts->nelmts *= dims1[j]; + } + opts->rank = rank1; + init_acc_pos((unsigned)opts->rank, opts->dims, opts->acc, opts->pos, opts->p_min_idx); - buf1 = (void *)HDcalloc((size_t)(nelmts1), msize1); - buf2 = (void *)HDcalloc((size_t)(nelmts1), msize2); + /*--------------------------------------------------------------------- + * read + *---------------------------------------------------------------------- + */ + buf1 = (void *)HDcalloc((size_t)(opts->nelmts), msize1); + buf2 = (void *)HDcalloc((size_t)(opts->nelmts), msize2); + H5TOOLS_DEBUG("attr buffer size %ld * %ld", opts->nelmts, msize1); if(buf1 == NULL || buf2 == NULL) { parallel_print("cannot read into memory\n"); H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "buffer allocation failed"); @@ -416,6 +441,7 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const } else buf1hasdata = TRUE; + H5TOOLS_DEBUG("attr H5Aread 1"); if(H5Aread(attr2_id, mtype2_id, buf2) < 0) { parallel_print("Failed reading attribute2 %s\n", name2); @@ -423,49 +449,84 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const } else buf2hasdata = TRUE; + H5TOOLS_DEBUG("attr H5Aread 2"); /* format output string */ - HDsnprintf(np1, sizeof(np1), "%s of <%s>", name1, path1); - HDsnprintf(np2, sizeof(np1), "%s of <%s>", name2, path2); + if (opts->obj_name[0] != NULL) + HDfree(opts->obj_name[0]); + opts->obj_name[0] = NULL; + if (opts->obj_name[1] != NULL) + HDfree(opts->obj_name[1]); + opts->obj_name[1] = NULL; + + H5TOOLS_DEBUG("attr_names: %s - %s : %s - %s", name1, name2, path1, path2); + if (name1) { + j = (int)HDstrlen(name1) + (int)HDstrlen(path1) + 7; + H5TOOLS_DEBUG("attr1_name: %s - %d", name1, j); + if (j > 0) { + opts->obj_name[0] = (char *)HDcalloc((size_t)j + 1, sizeof(char)); + HDsnprintf(opts->obj_name[0], j, "%s of <%s>", name1, path1); + opts->obj_name[0][j] = '\0'; + } + } + if (name2) { + j = (int)HDstrlen(name2) + (int)HDstrlen(path2) + 7; + H5TOOLS_DEBUG("attr2_name: %s - %d", name2, j); + if (j > 0) { + opts->obj_name[1] = (char *)HDcalloc((size_t)j + 1, sizeof(char)); + HDsnprintf(opts->obj_name[1], j, "%s of <%s>", name2, path2); + opts->obj_name[1][j] = '\0'; + } + } /*--------------------------------------------------------------------- * array compare *---------------------------------------------------------------------- */ - H5TOOLS_DEBUG("diff_attr_data array compare %s - %s", name1, name1); + H5TOOLS_DEBUG("array compare %s - %s", opts->obj_name[0], opts->obj_name[1]); + + opts->hs_nelmts = opts->nelmts; + opts->m_tid = mtype1_id; + + /* initialize the current stripmine position; this is necessary to print the array indices */ + for (j = 0; j < opts->rank; j++) + opts->sm_pos[j] = (hsize_t)0; /* always print name */ /* verbose (-v) and report (-r) mode */ - if(opts->m_verbose || opts->m_report) { - do_print_attrname("attribute", np1, np2); + if(opts->mode_verbose || opts->mode_report) { + do_print_attrname("attribute", opts->obj_name[0], opts->obj_name[1]); - nfound = diff_array(buf1, buf2, nelmts1, (hsize_t) 0, rank1, - dims1, opts, np1, np2, mtype1_id, attr1_id, attr2_id); + nfound = diff_array(buf1, buf2, opts, attr1_id, attr2_id); print_found(nfound); } /* quiet mode (-q), just count differences */ - else if(opts->m_quiet) { - nfound = diff_array(buf1, buf2, nelmts1, (hsize_t) 0, rank1, - dims1, opts, np1, np2, mtype1_id, attr1_id, attr2_id); + else if(opts->mode_quiet) { + nfound = diff_array(buf1, buf2, opts, attr1_id, attr2_id); } /* the rest (-c, none, ...) */ else { - nfound = diff_array(buf1, buf2, nelmts1, (hsize_t) 0, rank1, - dims1, opts, np1, np2, mtype1_id, attr1_id, attr2_id); + nfound = diff_array(buf1, buf2, opts, attr1_id, attr2_id); /* print info if compatible and difference found */ if (nfound) { - do_print_attrname("attribute", np1, np2); + do_print_attrname("attribute", opts->obj_name[0], opts->obj_name[1]); print_found(nfound); } /* end if */ } /* end else */ } - H5TOOLS_DEBUG("diff_attr_data check for comparable TYPE and SPACE complete nfound:%d - errstat:%d", nfound, opts->err_stat); + H5TOOLS_DEBUG("check for comparable TYPE and SPACE complete nfound:%d - errstat:%d", nfound, opts->err_stat); /*---------------------------------------------------------------------- * close *---------------------------------------------------------------------- */ + if (opts->obj_name[0] != NULL) + HDfree(opts->obj_name[0]); + opts->obj_name[0] = NULL; + if (opts->obj_name[1] != NULL) + HDfree(opts->obj_name[1]); + opts->obj_name[1] = NULL; /* Free buf1 and buf2, check both VLEN-data VLEN-string to reclaim any * VLEN memory first */ @@ -543,28 +604,32 @@ hsize_t diff_attr(hid_t loc1_id, hid_t loc2_id, const char *path1, const char *p unsigned u; /* Local index variable */ hsize_t nfound = 0; hsize_t nfound_total = 0; + diff_opt_t attr_opts; diff_err_t ret_value = opts->err_stat; H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); + attr_opts = *opts; + attr_opts.obj_name[0] = NULL; + attr_opts.obj_name[1] = NULL; - if(build_match_list_attrs(loc1_id, loc2_id, &match_list_attrs, opts) < 0) { + if(build_match_list_attrs(loc1_id, loc2_id, &match_list_attrs, &attr_opts) < 0) { H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "build_match_list_attrs failed"); } - H5TOOLS_DEBUG("build_match_list_attrs - errstat:%d", opts->err_stat); + H5TOOLS_DEBUG("check match_list_attrs - opts->contents:%d - errstat:%d", attr_opts.contents, attr_opts.err_stat); /* if detect any unique extra attr */ if(match_list_attrs->nattrs_only1 || match_list_attrs->nattrs_only2) { - H5TOOLS_DEBUG("diff_attr attributes only in one file"); + H5TOOLS_DEBUG("attributes only in one file"); /* exit will be 1 */ - opts->contents = 0; + attr_opts.contents = 0; } - H5TOOLS_DEBUG("match_list_attrs info - errstat:%d", opts->err_stat); + H5TOOLS_DEBUG("match_list_attrs info - opts->contents:%d", attr_opts.contents); for(u = 0; u < (unsigned)match_list_attrs->nattrs; u++) { - H5TOOLS_DEBUG("match_list_attrs loop[%d] - errstat:%d", u, opts->err_stat); + H5TOOLS_DEBUG("match_list_attrs loop[%d] - errstat:%d", u, attr_opts.err_stat); if((match_list_attrs->attrs[u].exist[0]) && (match_list_attrs->attrs[u].exist[1])) { name1 = name2 = match_list_attrs->attrs[u].name; - H5TOOLS_DEBUG("diff_attr name - %s", name1); + H5TOOLS_DEBUG("name - %s", name1); /*-------------- * attribute 1 */ @@ -576,8 +641,8 @@ hsize_t diff_attr(hid_t loc1_id, hid_t loc2_id, const char *path1, const char *p if((attr2_id = H5Aopen(loc2_id, name2, H5P_DEFAULT)) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Aopen second attribute failed"); - H5TOOLS_DEBUG("diff_attr got attributes"); - nfound = diff_attr_data(attr1_id, attr2_id, name1, name2, path1, path2, opts); + H5TOOLS_DEBUG("got attributes"); + nfound = diff_attr_data(attr1_id, attr2_id, name1, name2, path1, path2, &attr_opts); if(H5Aclose(attr1_id) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Aget_type first attribute failed"); if(H5Aclose(attr2_id) < 0) @@ -588,7 +653,10 @@ hsize_t diff_attr(hid_t loc1_id, hid_t loc2_id, const char *path1, const char *p } /* u */ done: - opts->err_stat = opts->err_stat | ret_value; + opts->print_header = attr_opts.print_header; + opts->contents = attr_opts.contents; + opts->not_cmp = attr_opts.not_cmp; + opts->err_stat = attr_opts.err_stat | ret_value; H5E_BEGIN_TRY { table_attrs_free(match_list_attrs); diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c index cea20a8..944440e 100644 --- a/tools/lib/h5diff_dset.c +++ b/tools/lib/h5diff_dset.c @@ -27,7 +27,8 @@ * Return: Number of differences found *------------------------------------------------------------------------- */ -hsize_t diff_dataset(hid_t file1_id, hid_t file2_id, const char *obj1_name, const char *obj2_name, diff_opt_t *opts) +hsize_t +diff_dataset(hid_t file1_id, hid_t file2_id, const char *obj1_name, const char *obj2_name, diff_opt_t *opts) { int status = -1; hid_t did1 = H5I_INVALID_HID; @@ -35,9 +36,15 @@ hsize_t diff_dataset(hid_t file1_id, hid_t file2_id, const char *obj1_name, cons hid_t dcpl1 = H5I_INVALID_HID; hid_t dcpl2 = H5I_INVALID_HID; hsize_t nfound = 0; + diff_opt_t diff_opts; diff_err_t ret_value = opts->err_stat; H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat); + diff_opts = *opts; + diff_opts.obj_name[0] = NULL; + diff_opts.obj_name[1] = NULL; + + H5TOOLS_DEBUG("obj_names: %s - %s", obj1_name, obj2_name); /*------------------------------------------------------------------------- * open the handles *------------------------------------------------------------------------- @@ -64,20 +71,22 @@ hsize_t diff_dataset(hid_t file1_id, hid_t file2_id, const char *obj1_name, cons * 2) the internal filters might be turned off *------------------------------------------------------------------------- */ - H5TOOLS_DEBUG("diff_dataset h5tools_canreadf then diff_datasetid"); - if ((status = h5tools_canreadf((opts->m_verbose ? obj1_name : NULL), dcpl1) == 1) && - (status = h5tools_canreadf((opts->m_verbose ? obj2_name : NULL), dcpl2) == 1)) - nfound = diff_datasetid(did1, did2, obj1_name, obj2_name, opts); + H5TOOLS_DEBUG("h5tools_canreadf then diff_datasetid"); + if ((status = h5tools_canreadf((opts->mode_verbose ? obj1_name : NULL), dcpl1) == 1) && + (status = h5tools_canreadf((opts->mode_verbose ? obj2_name : NULL), dcpl2) == 1)) + nfound = diff_datasetid(did1, did2, obj1_name, obj2_name, &diff_opts); else if (status < 0) { H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "h5tools_canreadf failed"); } else { ret_value = 1; - opts->not_cmp = 1; + diff_opts.not_cmp = 1; } done: - opts->err_stat = opts->err_stat | ret_value; + opts->print_header = diff_opts.print_header; + opts->not_cmp = diff_opts.not_cmp; + opts->err_stat = diff_opts.err_stat | ret_value; /* disable error reporting */ H5E_BEGIN_TRY { @@ -143,36 +152,31 @@ done: * *------------------------------------------------------------------------- */ -hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char *obj2_name, diff_opt_t *opts) +hsize_t +diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char *obj2_name, diff_opt_t *opts) { hid_t sid1 = H5I_INVALID_HID; hid_t sid2 = H5I_INVALID_HID; hid_t f_tid1 = H5I_INVALID_HID; hid_t f_tid2 = H5I_INVALID_HID; - hid_t dam_tid = H5I_INVALID_HID; /* m_tid for diff_array function */ hid_t m_tid1 = H5I_INVALID_HID; hid_t m_tid2 = H5I_INVALID_HID; hid_t dcpl1 = H5I_INVALID_HID; hid_t dcpl2 = H5I_INVALID_HID; H5D_layout_t stl1 = -1; H5D_layout_t stl2 = -1; - size_t dam_size; /* m_size for diff_array function */ size_t m_size1; size_t m_size2; H5T_sign_t sign1; H5T_sign_t sign2; int rank1; int rank2; - hsize_t danelmts; /* nelmts for diff_array function */ hsize_t nelmts1; hsize_t nelmts2; - hsize_t *dadims; /* dims for diff_array function */ hsize_t dims1[H5S_MAX_RANK]; hsize_t dims2[H5S_MAX_RANK]; hsize_t maxdim1[H5S_MAX_RANK]; hsize_t maxdim2[H5S_MAX_RANK]; - const char *name1 = NULL; /* relative names */ - const char *name2 = NULL; hsize_t storage_size1; hsize_t storage_size2; hsize_t nfound = 0; /* number of differences found */ @@ -181,9 +185,10 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char void *buf2 = NULL; void *sm_buf1 = NULL; void *sm_buf2 = NULL; - hid_t sm_space = H5I_INVALID_HID; /*stripmine data space */ + hid_t sm_space1 = H5I_INVALID_HID; /*stripmine data space */ + hid_t sm_space2 = H5I_INVALID_HID; /*stripmine data space */ size_t need; /* bytes needed for malloc */ - int i; + int i, j; unsigned int vl_data1 = 0; /*contains VL datatypes */ unsigned int vl_data2 = 0; /*contains VL datatypes */ diff_err_t ret_value = opts->err_stat; @@ -233,13 +238,15 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char */ if((dcpl1 = H5Dget_create_plist(did1)) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dget_create_plist failed"); - if((dcpl2 = H5Dget_create_plist(did2)) < 0) - H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dget_create_plist failed"); - if((stl1 = H5Pget_layout(dcpl1)) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Pget_layout failed"); + H5Pclose(dcpl1); + + if((dcpl2 = H5Dget_create_plist(did2)) < 0) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dget_create_plist failed"); if((stl2 = H5Pget_layout(dcpl2)) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Pget_layout failed"); + H5Pclose(dcpl2); /*------------------------------------------------------------------------- * check for empty datasets @@ -253,27 +260,46 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char if(storage_size1 == 0 || storage_size2 == 0) { if(stl1 == H5D_VIRTUAL || stl2 == H5D_VIRTUAL) { - if((opts->m_verbose||opts->m_list_not_cmp) && obj1_name && obj2_name) + if((opts->mode_verbose||opts->mode_list_not_cmp) && obj1_name && obj2_name) parallel_print("Warning: <%s> or <%s> is a virtual dataset\n", obj1_name, obj2_name); } else { - if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) + if((opts->mode_verbose || opts->mode_list_not_cmp) && obj1_name && obj2_name) parallel_print("Not comparable: <%s> or <%s> is an empty dataset\n", obj1_name, obj2_name); can_compare = 0; opts->not_cmp = 1; } } + H5TOOLS_DEBUG("obj_names: %s - %s", obj1_name, obj2_name); + opts->obj_name[0] = NULL; + if (obj1_name) { + j = (int)HDstrlen(obj1_name); + H5TOOLS_DEBUG("obj1_name: %s - %d", obj1_name, j); + if (j > 0) { + opts->obj_name[0] = (char *)HDmalloc((size_t)j + 1); + HDstrncpy(opts->obj_name[0], obj1_name, (size_t)j + 1); + } + } + + + opts->obj_name[1] = NULL; + if (obj2_name) { + j = (int)HDstrlen(obj2_name); + H5TOOLS_DEBUG("obj2_name: %s - %d", obj2_name, j); + if (j > 0) { + opts->obj_name[1] = (char *)HDmalloc((size_t)j + 1); + HDstrncpy(opts->obj_name[1], obj2_name, (size_t)j + 1); + } + } + /*------------------------------------------------------------------------- * check for comparable TYPE and SPACE *------------------------------------------------------------------------- */ - if (diff_can_type(f_tid1, f_tid2, rank1, rank2, - dims1, dims2, maxdim1, maxdim2, - obj1_name, obj2_name, - opts, 0) != 1) + if (diff_can_type(f_tid1, f_tid2, rank1, rank2, dims1, dims2, maxdim1, maxdim2, opts, 0) != 1) can_compare = 0; - H5TOOLS_DEBUG("diff_can_type - errstat:%d", opts->err_stat); + H5TOOLS_DEBUG("diff_can_type returned errstat:%d", opts->err_stat); /*------------------------------------------------------------------------- * memory type and sizes @@ -312,7 +338,7 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char sign2 = H5Tget_sign(m_tid2); if(sign1 != sign2) { H5TOOLS_DEBUG("sign1 != sign2"); - if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { + if((opts->mode_verbose || opts->mode_list_not_cmp) && obj1_name && obj2_name) { parallel_print("Not comparable: <%s> has sign %s ", obj1_name, get_sign(sign1)); parallel_print("and <%s> has sign %s\n", obj2_name, get_sign(sign2)); } @@ -360,41 +386,56 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char *------------------------------------------------------------------ */ H5TOOLS_DEBUG("NOT H5T_ARRAY, upgrade the smaller memory size?"); - if (FAIL == match_up_memsize (f_tid1, f_tid2, - &m_tid1, &m_tid2, - &m_size1, &m_size2)) + if (FAIL == match_up_memsize (f_tid1, f_tid2, &m_tid1, &m_tid2, &m_size1, &m_size2)) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "match_up_memsize failed"); H5TOOLS_DEBUG("m_size: %ld - %ld", m_size1, m_size2); - dadims = dims1; - dam_size = m_size1; - dam_tid = m_tid1; - danelmts = nelmts1; + opts->rank = rank1; + for(i = 0; i < rank1; i++) + opts->dims[i] = dims1[i]; + opts->m_size = m_size1; + opts->m_tid = m_tid1; + opts->nelmts = nelmts1; need = (size_t)(nelmts1 * m_size1); /* bytes needed */ } else { H5TOOLS_DEBUG("Array dims: %d - %d", dims1[0], dims2[0]); /* Compare the smallest array, but create the largest buffer */ if(m_size1 <= m_size2) { - dadims = dims1; - dam_size = m_size1; - dam_tid = m_tid1; - danelmts = nelmts1; + opts->rank = rank1; + for(i = 0; i < rank1; i++) + opts->dims[i] = dims1[i]; + opts->m_size = m_size1; + opts->m_tid = m_tid1; + opts->nelmts = nelmts1; need = (size_t)(nelmts2 * m_size2); /* bytes needed */ } else { - dadims = dims2; - dam_size = m_size2; - dam_tid = m_tid2; - danelmts = nelmts2; + opts->rank = rank2; + for(i = 0; i < rank2; i++) + opts->dims[i] = dims2[i]; + opts->m_size = m_size2; + opts->m_tid = m_tid2; + opts->nelmts = nelmts2; need = (size_t)(nelmts1 * m_size1); /* bytes needed */ } } + opts->hs_nelmts = opts->nelmts; + H5TOOLS_DEBUG("need: %ld", need); /* print names */ + H5TOOLS_DEBUG("obj_names: %s - %s", obj1_name, obj2_name); + + if (opts->obj_name[0] != NULL) + HDfree(opts->obj_name[0]); + opts->obj_name[0] = NULL; + if (opts->obj_name[1] != NULL) + HDfree(opts->obj_name[1]); + opts->obj_name[1] = NULL; + if(obj1_name) - name1 = diff_basename(obj1_name); + opts->obj_name[0] = HDstrdup(diff_basename(obj1_name)); if(obj2_name) - name2 = diff_basename(obj2_name); - H5TOOLS_DEBUG("obj_names: %s - %s", name1, name2); + opts->obj_name[1] = HDstrdup(diff_basename(obj2_name)); + H5TOOLS_DEBUG("obj_names: %s - %s", opts->obj_name[0], opts->obj_name[1]); H5TOOLS_DEBUG("read/compare"); @@ -407,7 +448,14 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char buf2 = HDmalloc(need); } /* end if */ - if(buf1 != NULL && buf2 != NULL) { + /* Assume entire data space to be printed */ + init_acc_pos((unsigned)opts->rank, opts->dims, opts->acc, opts->pos, opts->p_min_idx); + + for(i = 0; i < opts->rank; i++) { + opts->p_max_idx[i] = opts->dims[i]; + } + + if(buf1 != NULL && buf2 != NULL && opts->sset[0] == NULL && opts->sset[1] == NULL) { H5TOOLS_DEBUG("buf1 != NULL && buf2 != NULL"); H5TOOLS_DEBUG("H5Dread did1"); if(H5Dread(did1, m_tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1) < 0) @@ -416,10 +464,13 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char if(H5Dread(did2, m_tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dread failed"); + /* initialize the current stripmine position; this is necessary to print the array indices */ + for (j = 0; j < opts->rank; j++) + opts->sm_pos[j] = (hsize_t)0; + /* array diff */ - nfound = diff_array(buf1, buf2, danelmts, (hsize_t)0, rank1, dadims, - opts, name1, name2, dam_tid, did1, did2); - H5TOOLS_DEBUG("diff_array nfound:%d - errstat:%d", nfound, opts->err_stat); + nfound = diff_array(buf1, buf2, opts, did1, did2); + H5TOOLS_DEBUG("diff_array ret nfound:%d - errstat:%d", nfound, opts->err_stat); /* reclaim any VL memory, if necessary */ H5TOOLS_DEBUG("check vl_data1:%d", vl_data1); @@ -438,111 +489,369 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char } } /* end if */ else { /* possibly not enough memory, read/compare by hyperslabs */ - size_t p_type_nbytes = dam_size; /*size of memory type */ - hsize_t p_nelmts = danelmts; /*total selected elmts */ - hsize_t elmtno; /*counter */ - int carry; /*counter carry value */ + hsize_t elmtno; /* counter */ + int carry; /* counter carry value */ /* stripmine info */ - hsize_t sm_size[H5S_MAX_RANK]; /*stripmine size */ - hsize_t sm_nbytes; /*bytes per stripmine */ - hsize_t sm_nelmts; /*elements per stripmine*/ + hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ + hsize_t sm_block[H5S_MAX_RANK]; /* stripmine block size */ + hsize_t sm_nbytes; /* bytes per stripmine */ + hsize_t sm_nelmts1; /* elements per stripmine */ + hsize_t sm_nelmts2; /* elements per stripmine */ + hssize_t ssm_nelmts; /* elements temp */ /* hyperslab info */ - hsize_t hs_offset[H5S_MAX_RANK]; /*starting offset */ - hsize_t hs_size[H5S_MAX_RANK]; /*size this pass */ - hsize_t hs_nelmts; /*elements in request */ - hsize_t zero[8]; /*vector of zeros */ + hsize_t hs_offset1[H5S_MAX_RANK]; /* starting offset */ + hsize_t hs_count1[H5S_MAX_RANK]; /* number of blocks */ + hsize_t hs_block1[H5S_MAX_RANK]; /* size of blocks */ + hsize_t hs_stride1[H5S_MAX_RANK]; /* stride */ + hsize_t hs_size1[H5S_MAX_RANK]; /* size this pass */ + hsize_t hs_offset2[H5S_MAX_RANK]; /* starting offset */ + hsize_t hs_count2[H5S_MAX_RANK]; /* number of blocks */ + hsize_t hs_block2[H5S_MAX_RANK]; /* size of blocks */ + hsize_t hs_stride2[H5S_MAX_RANK]; /* stride */ + hsize_t hs_size2[H5S_MAX_RANK]; /* size this pass */ + hsize_t hs_nelmts1 = 0; /* elements in request */ + hsize_t hs_nelmts2 = 0; /* elements in request */ + hsize_t zero[8]; /* vector of zeros */ + hsize_t low[H5S_MAX_RANK]; /* low bound of hyperslab */ + hsize_t high[H5S_MAX_RANK]; /* higher bound of hyperslab */ + + H5TOOLS_DEBUG("reclaim any VL memory and free unused buffers"); + if(buf1 != NULL) { + /* reclaim any VL memory, if necessary */ + if(vl_data1) + H5Treclaim(m_tid1, sid1, H5P_DEFAULT, buf1); + HDfree(buf1); + buf1 = NULL; + } + if(buf2 != NULL) { + /* reclaim any VL memory, if necessary */ + if(vl_data2) + H5Treclaim(m_tid2, sid2, H5P_DEFAULT, buf2); + HDfree(buf2); + buf2 = NULL; + } + + /* the stripmine loop */ + HDmemset(hs_offset1, 0, sizeof hs_offset1); + HDmemset(hs_stride1, 0, sizeof hs_stride1); + HDmemset(hs_count1, 0, sizeof hs_count1); + HDmemset(hs_block1, 0, sizeof hs_block1); + HDmemset(hs_size1, 0, sizeof hs_size1); + HDmemset(hs_offset2, 0, sizeof hs_offset2); + HDmemset(hs_stride2, 0, sizeof hs_stride2); + HDmemset(hs_count2, 0, sizeof hs_count2); + HDmemset(hs_block2, 0, sizeof hs_block2); + HDmemset(hs_size2, 0, sizeof hs_size2); + HDmemset(zero, 0, sizeof zero); + + /* if subsetting was requested - initialize the subsetting variables */ + H5TOOLS_DEBUG("compare by hyperslabs: opts->nelmts=%ld - opts->m_size=%ld", opts->nelmts, opts->m_size); + if (opts->sset[0] != NULL) { + H5TOOLS_DEBUG("opts->sset[0] != NULL"); + + /* Check for valid settings - default if not specified */ + if(!opts->sset[0]->start.data || !opts->sset[0]->stride.data || !opts->sset[0]->count.data || !opts->sset[0]->block.data) { + /* they didn't specify a ``stride'' or ``block''. default to 1 in all + * dimensions */ + if(!opts->sset[0]->start.data) { + /* default to (0, 0, ...) for the start coord */ + opts->sset[0]->start.data = (hsize_t *)HDcalloc((size_t)rank1, sizeof(hsize_t)); + opts->sset[0]->start.len = (unsigned)rank1; + } + + if(!opts->sset[0]->stride.data) { + opts->sset[0]->stride.data = (hsize_t *)HDcalloc((size_t)rank1, sizeof(hsize_t)); + opts->sset[0]->stride.len = (unsigned)rank1; + for (i = 0; i < rank1; i++) + opts->sset[0]->stride.data[i] = 1; + } + + if(!opts->sset[0]->count.data) { + opts->sset[0]->count.data = (hsize_t *)HDcalloc((size_t)rank1, sizeof(hsize_t)); + opts->sset[0]->count.len = (unsigned)rank1; + for (i = 0; i < rank1; i++) + opts->sset[0]->count.data[i] = 1; + } + + if(!opts->sset[0]->block.data) { + opts->sset[0]->block.data = (hsize_t *)HDcalloc((size_t)rank1, sizeof(hsize_t)); + opts->sset[0]->block.len = (unsigned)rank1; + for (i = 0; i < rank1; i++) + opts->sset[0]->block.data[i] = 1; + } + + /*------------------------------------------------------------------------- + * check for block overlap + *------------------------------------------------------------------------- + */ + for(i = 0; i < rank1; i++) { + if(opts->sset[0]->count.data[i] > 1) { + if(opts->sset[0]->stride.data[i] < opts->sset[0]->block.data[i]) { + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "wrong subset selection[0]; blocks overlap"); + } /* end if */ + } /* end if */ + } /* end for */ + } + + /* Reset the total number of elements to the subset from the command */ + opts->nelmts = 1; + for (i = 0; i < rank1; i++) { + hs_offset1[i] = opts->sset[0]->start.data[i]; + hs_stride1[i] = opts->sset[0]->stride.data[i]; + hs_count1[i] = opts->sset[0]->count.data[i]; + hs_block1[i] = opts->sset[0]->block.data[i]; + opts->nelmts *= hs_count1[i] * hs_block1[i]; + hs_size1[i] = 0; + H5TOOLS_DEBUG("[%d]hs_offset1:%ld, hs_stride1:%ld, hs_count1:%ld, hs_block1:%ld", i, hs_offset1[i], hs_stride1[i], hs_count1[i], hs_block1[i]); + } + } + if (opts->sset[1] != NULL) { + H5TOOLS_DEBUG("opts->sset[1] != NULL"); + + /* Check for valid settings - default if not specified */ + if(!opts->sset[1]->start.data || !opts->sset[1]->stride.data || !opts->sset[1]->count.data || !opts->sset[1]->block.data) { + /* they didn't specify a ``stride'' or ``block''. default to 1 in all + * dimensions */ + if(!opts->sset[1]->start.data) { + /* default to (0, 0, ...) for the start coord */ + opts->sset[1]->start.data = (hsize_t *)HDcalloc((size_t)rank2, sizeof(hsize_t)); + opts->sset[1]->start.len = (unsigned)rank2; + } + + if(!opts->sset[1]->stride.data) { + opts->sset[1]->stride.data = (hsize_t *)HDcalloc((size_t)rank2, sizeof(hsize_t)); + opts->sset[1]->stride.len = (unsigned)rank2; + for (i = 0; i < rank2; i++) + opts->sset[1]->stride.data[i] = 1; + } + + if(!opts->sset[1]->count.data) { + opts->sset[1]->count.data = (hsize_t *)HDcalloc((size_t)rank2, sizeof(hsize_t)); + opts->sset[1]->count.len = (unsigned)rank2; + for (i = 0; i < rank2; i++) + opts->sset[1]->count.data[i] = 1; + } + + if(!opts->sset[1]->block.data) { + opts->sset[1]->block.data = (hsize_t *)HDcalloc((size_t)rank2, sizeof(hsize_t)); + opts->sset[1]->block.len = (unsigned)rank2; + for (i = 0; i < rank2; i++) + opts->sset[1]->block.data[i] = 1; + } + + /*------------------------------------------------------------------------- + * check for block overlap + *------------------------------------------------------------------------- + */ + for(i = 0; i < rank2; i++) { + if(opts->sset[1]->count.data[i] > 1) { + if(opts->sset[1]->stride.data[i] < opts->sset[1]->block.data[i]) { + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "wrong subset selection[1]; blocks overlap"); + } /* end if */ + } /* end if */ + } /* end for */ + } + + for (i = 0; i < rank2; i++) { + hs_offset2[i] = opts->sset[1]->start.data[i]; + hs_stride2[i] = opts->sset[1]->stride.data[i]; + hs_count2[i] = opts->sset[1]->count.data[i]; + hs_block2[i] = opts->sset[1]->block.data[i]; + hs_size2[i] = 0; + H5TOOLS_DEBUG("[%d]hs_offset2:%ld, hs_stride2:%ld, hs_count2:%ld, hs_block2:%ld", i, hs_offset2[i], hs_stride2[i], hs_count2[i], hs_block2[i]); + } + } /* * determine the strip mine size and allocate a buffer. The strip mine is * a hyperslab whose size is manageable. */ - sm_nbytes = p_type_nbytes; - - for(i = rank1; i > 0; --i) { - hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes; - - if(size == 0) /* datum size > H5TOOLS_BUFSIZE */ - size = 1; - sm_size[i - 1] = MIN(dadims[i - 1], size); - sm_nbytes *= sm_size[i - 1]; - H5TOOLS_DEBUG("sm_nbytes: %ld", sm_nbytes); - } /* end for */ - - /* malloc return code should be verified. - * If fail, need to handle the error. - * This else branch should be recoded as a separate function. - * Note that there are many "goto error" within this branch - * that fails to address freeing other objects created here. - * E.g., sm_space. - */ - if((sm_buf1 = HDmalloc((size_t)sm_nbytes)) == NULL) - H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "HDmalloc failed"); - if((sm_buf2 = HDmalloc((size_t)sm_nbytes)) == NULL) - H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "HDmalloc failed"); + sm_nbytes = opts->m_size; + if(opts->rank > 0) { + for (i = opts->rank; i > 0; --i) { + hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes; + if (size == 0) /* datum size > H5TOOLS_BUFSIZE */ + size = 1; + H5TOOLS_DEBUG("opts->dims[%d]: %ld - size: %ld", i - 1, opts->dims[i - 1], size); + if (opts->sset[1] != NULL) { + sm_size[i - 1] = MIN(hs_block1[i - 1] * hs_count1[i - 1], size); + sm_block[i - 1] = MIN(hs_block1[i - 1], sm_size[i - 1]); + } + else { + sm_size[i - 1] = MIN(opts->dims[i - 1], size); + sm_block[i - 1] = sm_size[i - 1]; + } + H5TOOLS_DEBUG("sm_size[%d]: %ld - sm_block:%ld", i - 1, sm_size[i - 1], sm_block[i - 1]); + sm_nbytes *= sm_size[i - 1]; + H5TOOLS_DEBUG("sm_nbytes: %ld", sm_nbytes); + } + } - sm_nelmts = sm_nbytes / p_type_nbytes; - sm_space = H5Screate_simple(1, &sm_nelmts, NULL); + H5TOOLS_DEBUG("opts->nelmts: %ld", opts->nelmts); + for(elmtno = 0; elmtno < opts->nelmts; elmtno += opts->hs_nelmts) { + H5TOOLS_DEBUG("elmtno: %ld - hs_nelmts1: %ld", elmtno, hs_nelmts1); - /* the stripmine loop */ - HDmemset(hs_offset, 0, sizeof hs_offset); - HDmemset(zero, 0, sizeof zero); + if(NULL == (sm_buf1 = (unsigned char *)HDmalloc((size_t) sm_nbytes))) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Could not allocate buffer for strip-mine"); + if(NULL == (sm_buf2 = (unsigned char *)HDmalloc((size_t) sm_nbytes))) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Could not allocate buffer for strip-mine"); - for(elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) { /* calculate the hyperslab size */ - if(rank1 > 0) { - for(i = 0, hs_nelmts = 1; i < rank1; i++) { - hs_size[i] = MIN(dadims[i] - hs_offset[i], sm_size[i]); - hs_nelmts *= hs_size[i]; - } /* end for */ - if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) - H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab failed"); - if(H5Sselect_hyperslab(sid2, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) + /* initialize subset */ + if(opts->rank > 0) { + if (opts->sset[0] != NULL) { + H5TOOLS_DEBUG("sset1 has data"); + /* calculate the potential number of elements */ + for(i = 0; i < rank1; i++) { + H5TOOLS_DEBUG("[%d]opts->dims: %ld - hs_offset1: %ld - sm_block: %ld", i, opts->dims[i], hs_offset1[i], sm_block[i]); + hs_size1[i] = MIN(opts->dims[i] - hs_offset1[i], sm_block[i]); + H5TOOLS_DEBUG("hs_size1[%d]: %ld", i, hs_size1[i]); + } + if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, hs_offset1, hs_stride1, hs_count1, hs_size1) < 0) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab sid1 failed"); + } + else { + for(i = 0, hs_nelmts1 = 1; i < rank1; i++) { + H5TOOLS_DEBUG("[%d]opts->dims: %ld - hs_offset1: %ld - sm_block: %ld", i, opts->dims[i], hs_offset1[i], sm_block[i]); + hs_size1[i] = MIN(opts->dims[i] - hs_offset1[i], sm_block[i]); + H5TOOLS_DEBUG("hs_size1[%d]: %ld", i, hs_size1[i]); + hs_nelmts1 *= hs_size1[i]; + H5TOOLS_DEBUG("hs_nelmts1:%ld *= hs_size1[%d]: %ld", hs_nelmts1, i, hs_size1[i]); + } + if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, hs_offset1, NULL, hs_size1, NULL) < 0) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab sid1 failed"); + } + + if((ssm_nelmts = H5Sget_select_npoints(sid1)) < 0) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sget_select_npoints failed"); + sm_nelmts1 = (hsize_t)ssm_nelmts; + H5TOOLS_DEBUG("sm_nelmts1: %ld", sm_nelmts1); + hs_nelmts1 = sm_nelmts1; + + if((sm_space1 = H5Screate_simple(1, &sm_nelmts1, NULL)) < 0) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Screate_simple failed"); + + if(H5Sselect_hyperslab(sm_space1, H5S_SELECT_SET, zero, NULL, &sm_nelmts1, NULL) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab failed"); - if(H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0) + + if (opts->sset[1] != NULL) { + H5TOOLS_DEBUG("sset2 has data"); + for(i = 0; i < rank2; i++) { + H5TOOLS_DEBUG("[%d]opts->dims: %ld - hs_offset2: %ld - sm_block: %ld", i, opts->dims[i], hs_offset2[i], sm_block[i]); + hs_size2[i] = MIN(opts->dims[i] - hs_offset2[i], sm_block[i]); + H5TOOLS_DEBUG("hs_size2[%d]: %ld", i, hs_size2[i]); + } + if(H5Sselect_hyperslab(sid2, H5S_SELECT_SET, hs_offset2, hs_stride2, hs_count2, hs_size2) < 0) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab sid2 failed"); + } + else { + for(i = 0, hs_nelmts2 = 1; i < rank2; i++) { + H5TOOLS_DEBUG("[%d]opts->dims: %ld - hs_offset2: %ld - sm_block: %ld", i, opts->dims[i], hs_offset2[i], sm_block[i]); + hs_size2[i] = MIN(opts->dims[i] - hs_offset2[i], sm_block[i]); + H5TOOLS_DEBUG("hs_size2[%d]: %ld", i, hs_size2[i]); + hs_nelmts2 *= hs_size2[i]; + H5TOOLS_DEBUG("hs_nelmts2:%ld *= hs_size2[%d]: %ld", hs_nelmts2, i, hs_size2[i]); + } + if(H5Sselect_hyperslab(sid2, H5S_SELECT_SET, hs_offset2, NULL, hs_size2, NULL) < 0) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab sid2 failed"); + } + + if((ssm_nelmts = H5Sget_select_npoints(sid2)) < 0) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sget_select_npoints failed"); + sm_nelmts2 = (hsize_t)ssm_nelmts; + H5TOOLS_DEBUG("sm_nelmts2: %ld", sm_nelmts2); + hs_nelmts2 = sm_nelmts2; + + if((sm_space2 = H5Screate_simple(1, &sm_nelmts2, NULL)) < 0) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Screate_simple failed"); + + if(H5Sselect_hyperslab(sm_space2, H5S_SELECT_SET, zero, NULL, &sm_nelmts2, NULL) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab failed"); - } /* end if */ + } else - hs_nelmts = 1; + hs_nelmts1 = 1; + opts->hs_nelmts = hs_nelmts1; + H5TOOLS_DEBUG("hs_nelmts: %ld", opts->hs_nelmts); - if(H5Dread(did1, m_tid1, sm_space, sid1, H5P_DEFAULT, sm_buf1) < 0) + /* read the data */ + if(H5Dread(did1, m_tid1, sm_space1, sid1, H5P_DEFAULT, sm_buf1) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dread failed"); - if(H5Dread(did2, m_tid2, sm_space, sid2, H5P_DEFAULT, sm_buf2) < 0) + if(H5Dread(did2, m_tid2, sm_space2, sid2, H5P_DEFAULT, sm_buf2) < 0) H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dread failed"); + /* print array indices. get the lower bound of the hyperslab and calculate + the element position at the start of hyperslab */ + if(H5Sget_select_bounds(sid1, low, high) < 0) + H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sget_select_bounds failed"); + /* initialize the current stripmine position; this is necessary to print the array indices */ + for (j = 0; j < opts->rank; j++) + opts->sm_pos[j] = low[j]; + + /* Assume entire data space to be printed */ + init_acc_pos((unsigned)opts->rank, opts->dims, opts->acc, opts->pos, opts->p_min_idx); + /* get array differences. in the case of hyperslab read, increment the number of differences found in each hyperslab and pass the position at the beginning for printing */ - nfound += diff_array(sm_buf1, sm_buf2, hs_nelmts, elmtno, rank1, - dadims, opts, name1, name2, dam_tid, did1, did2); - - /* reclaim any VL memory, if necessary */ - if(vl_data1) - H5Treclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf1); - if(vl_data2) - H5Treclaim(m_tid2, sm_space, H5P_DEFAULT, sm_buf2); + nfound += diff_array(sm_buf1, sm_buf2, opts, did1, did2); + + if(sm_buf1 != NULL) { + /* reclaim any VL memory, if necessary */ + if(vl_data1) + H5Treclaim(m_tid1, sm_space1, H5P_DEFAULT, sm_buf1); + HDfree(sm_buf1); + sm_buf1 = NULL; + } + if(sm_buf2 != NULL) { + /* reclaim any VL memory, if necessary */ + if(vl_data2) + H5Treclaim(m_tid2, sm_space2, H5P_DEFAULT, sm_buf2); + HDfree(sm_buf2); + sm_buf2 = NULL; + } + + H5Sclose(sm_space1); + H5Sclose(sm_space2); /* calculate the next hyperslab offset */ - for(i = rank1, carry = 1; i > 0 && carry; --i) { - hs_offset[i - 1] += hs_size[i - 1]; - if(hs_offset[i - 1] == dadims[i - 1]) - hs_offset[i - 1] = 0; + for(i = opts->rank, carry = 1; i > 0 && carry; --i) { + if (opts->sset[0] != NULL) { + H5TOOLS_DEBUG("[%d]hs_size1:%ld - hs_block1:%ld - hs_stride1:%ld", i-1, hs_size1[i-1], hs_block1[i - 1], hs_stride1[i - 1]); + if(hs_size1[i - 1] >= hs_block1[i - 1]) { + hs_offset1[i - 1] += hs_size1[i - 1]; + } + else { + hs_offset1[i - 1] += hs_stride1[i - 1]; + } + } + else + hs_offset1[i - 1] += hs_size1[i - 1]; + H5TOOLS_DEBUG("[%d]hs_offset1:%ld - opts->dims:%ld", i-1, hs_offset1[i-1], opts->dims[i - 1]); + if(hs_offset1[i - 1] >= opts->dims[i - 1]) + hs_offset1[i - 1] = 0; else carry = 0; - } /* i */ - } /* elmtno */ - if(sm_buf1 != NULL) { - HDfree(sm_buf1); - sm_buf1 = NULL; - } - if(sm_buf2 != NULL) { - HDfree(sm_buf2); - sm_buf2 = NULL; - } - - H5Sclose(sm_space); + H5TOOLS_DEBUG("[%d]hs_offset1:%ld", i-1, hs_offset1[i-1]); + if (opts->sset[1] != NULL) { + H5TOOLS_DEBUG("[%d]hs_size2:%ld - hs_block2:%ld - hs_stride2:%ld", i-1, hs_size2[i-1], hs_block2[i - 1], hs_stride2[i - 1]); + if(hs_size2[i - 1] >= hs_block2[i - 1]) { + hs_offset2[i - 1] += hs_size2[i - 1]; + } + else { + hs_offset2[i - 1] += hs_stride2[i - 1]; + } + } + else + hs_offset2[i - 1] += hs_size2[i - 1]; + H5TOOLS_DEBUG("[%d]hs_offset2:%ld - opts->dims:%ld", i-1, hs_offset2[i-1], opts->dims[i - 1]); + if(hs_offset2[i - 1] >= opts->dims[i - 1]) + hs_offset2[i - 1] = 0; + H5TOOLS_DEBUG("[%d]hs_offset2:%ld", i-1, hs_offset2[i-1]); + } + } /* elmtno for loop */ } /* hyperslab read */ - H5TOOLS_DEBUG("can_compare complete"); + H5TOOLS_DEBUG("can compare complete"); } /*can_compare*/ @@ -550,12 +859,20 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char * close *------------------------------------------------------------------------- */ - H5TOOLS_DEBUG("reclaim any VL memory - errstat:%d", opts->err_stat); done: opts->err_stat = opts->err_stat | ret_value; + H5TOOLS_DEBUG("free names - errstat:%d", opts->err_stat); /* free */ + if (opts->obj_name[0] != NULL) + HDfree(opts->obj_name[0]); + opts->obj_name[0] = NULL; + if (opts->obj_name[1] != NULL) + HDfree(opts->obj_name[1]); + opts->obj_name[1] = NULL; + + H5TOOLS_DEBUG("reclaim any VL memory"); if(buf1 != NULL) { /* reclaim any VL memory, if necessary */ if(vl_data1) @@ -570,26 +887,31 @@ done: HDfree(buf2); buf2 = NULL; } + H5TOOLS_DEBUG("reclaim any stripmine VL memory"); if(sm_buf1 != NULL) { /* reclaim any VL memory, if necessary */ if(vl_data1) - H5Treclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf1); + H5Treclaim(m_tid1, sm_space1, H5P_DEFAULT, sm_buf1); HDfree(sm_buf1); sm_buf1 = NULL; } if(sm_buf2 != NULL) { /* reclaim any VL memory, if necessary */ if(vl_data2) - H5Treclaim(m_tid2, sm_space, H5P_DEFAULT, sm_buf2); + H5Treclaim(m_tid2, sm_space2, H5P_DEFAULT, sm_buf2); HDfree(sm_buf2); sm_buf2 = NULL; } + H5TOOLS_DEBUG("close ids"); /* disable error reporting */ H5E_BEGIN_TRY { H5Sclose(sid1); H5Sclose(sid2); - H5Sclose(sm_space); + H5Sclose(sm_space1); + H5Sclose(sm_space2); + H5Pclose(dcpl1); + H5Pclose(dcpl2); H5Tclose(f_tid1); H5Tclose(f_tid2); H5Tclose(m_tid1); @@ -613,10 +935,9 @@ done: *------------------------------------------------------------------------- */ -int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, - hsize_t *dims1, hsize_t *dims2, hsize_t *maxdim1, hsize_t *maxdim2, - const char *obj1_name, const char *obj2_name, - diff_opt_t *opts, int is_compound) +int +diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, hsize_t *dims1, hsize_t *dims2, + hsize_t *maxdim1, hsize_t *maxdim2, diff_opt_t *opts, int is_compound) { H5T_class_t tclass1; H5T_class_t tclass2; @@ -635,19 +956,21 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, if((tclass2 = H5Tget_class(f_tid2)) < 0) H5TOOLS_GOTO_ERROR(FAIL, "H5Tget_class second object failed"); + H5TOOLS_DEBUG("obj_names: %s - %s", opts->obj_name[0], opts->obj_name[1]); if(tclass1 != tclass2) { - if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { + if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) { if(is_compound) { parallel_print("Not comparable: <%s> has a class %s and <%s> has a class %s\n", - obj1_name, get_class(tclass1), - obj2_name, get_class(tclass2)); + opts->obj_name[0], get_class(tclass1), + opts->obj_name[1], get_class(tclass2)); } else { parallel_print("Not comparable: <%s> is of class %s and <%s> is of class %s\n", - obj1_name, get_class(tclass1), - obj2_name, get_class(tclass2)); + opts->obj_name[0], get_class(tclass1), + opts->obj_name[1], get_class(tclass2)); } } + opts->not_cmp = 1; H5TOOLS_GOTO_DONE(0); } @@ -658,10 +981,11 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, */ switch (tclass1) { case H5T_TIME: - if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { + if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) { parallel_print("Not comparable: <%s> and <%s> are of class %s\n", - obj1_name, obj2_name, get_class(tclass2)); + opts->obj_name[0], opts->obj_name[1], get_class(tclass2)); } /* end if */ + opts->not_cmp = 1; H5TOOLS_GOTO_DONE(0); break; @@ -679,7 +1003,7 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, case H5T_NO_CLASS: case H5T_NCLASSES: default: - H5TOOLS_DEBUG("diff_can_type class - %s", get_class(tclass1)); + H5TOOLS_DEBUG("class - %s", get_class(tclass1)); break; } /* end switch */ @@ -687,15 +1011,15 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, * check for equal file datatype; warning only *------------------------------------------------------------------------- */ - if((H5Tequal(f_tid1, f_tid2) == 0) && (opts->m_verbose) && obj1_name && obj2_name) { + if((H5Tequal(f_tid1, f_tid2) == 0) && (opts->mode_verbose) && opts->obj_name[0] && opts->obj_name[1]) { H5T_class_t cl = H5Tget_class(f_tid1); parallel_print("Warning: different storage datatype\n"); if(cl == H5T_INTEGER || cl == H5T_FLOAT) { - parallel_print("<%s> has file datatype ", obj1_name); + parallel_print("<%s> has file datatype ", opts->obj_name[0]); print_type(f_tid1); parallel_print("\n"); - parallel_print("<%s> has file datatype ", obj2_name); + parallel_print("<%s> has file datatype ", opts->obj_name[1]); print_type(f_tid2); parallel_print("\n"); } @@ -706,18 +1030,19 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, *------------------------------------------------------------------------- */ if(rank1 != rank2) { - if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { - parallel_print("Not comparable: <%s> has rank %d, dimensions ", obj1_name, rank1); + if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) { + parallel_print("Not comparable: <%s> has rank %d, dimensions ", opts->obj_name[0], rank1); print_dimensions(rank1, dims1); parallel_print(", max dimensions "); print_dimensions(rank1, maxdim1); parallel_print("\n" ); - parallel_print("and <%s> has rank %d, dimensions ", obj2_name, rank2); + parallel_print("and <%s> has rank %d, dimensions ", opts->obj_name[1], rank2); print_dimensions(rank2, dims2); parallel_print(", max dimensions "); print_dimensions(rank2, maxdim2); parallel_print("\n"); } + opts->not_cmp = 1; H5TOOLS_GOTO_DONE(0); } @@ -740,20 +1065,21 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, *------------------------------------------------------------------------- */ if(dim_diff == 1) { - if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { - parallel_print("Not comparable: <%s> has rank %d, dimensions ", obj1_name, rank1); + if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) { + parallel_print("Not comparable: <%s> has rank %d, dimensions ", opts->obj_name[0], rank1); print_dimensions(rank1, dims1); if(maxdim1 && maxdim2) { parallel_print(", max dimensions "); print_dimensions(rank1, maxdim1); parallel_print("\n" ); - parallel_print("and <%s> has rank %d, dimensions ", obj2_name, rank2); + parallel_print("and <%s> has rank %d, dimensions ", opts->obj_name[1], rank2); print_dimensions(rank2, dims2); parallel_print(", max dimensions "); print_dimensions(rank2, maxdim2); parallel_print("\n"); } } + opts->not_cmp = 1; H5TOOLS_GOTO_DONE(0); } @@ -762,13 +1088,13 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, * maximum dimensions; just give a warning *------------------------------------------------------------------------- */ - if(maxdim1 && maxdim2 && maxdim_diff == 1 && obj1_name) { - if(opts->m_verbose) { + if(maxdim1 && maxdim2 && maxdim_diff == 1 && opts->obj_name[0]) { + if(opts->mode_verbose) { parallel_print( "Warning: different maximum dimensions\n"); - parallel_print("<%s> has max dimensions ", obj1_name); + parallel_print("<%s> has max dimensions ", opts->obj_name[0]); print_dimensions(rank1, maxdim1); parallel_print("\n"); - parallel_print("<%s> has max dimensions ", obj2_name); + parallel_print("<%s> has max dimensions ", opts->obj_name[1]); print_dimensions(rank2, maxdim2); parallel_print("\n"); } @@ -777,16 +1103,17 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, if(tclass1 == H5T_STRING) { htri_t vstrtype1 = -1; htri_t vstrtype2 = -1; - H5TOOLS_DEBUG("diff_can_type end - H5T_STRING"); + H5TOOLS_DEBUG(" - H5T_STRING"); vstrtype1 = H5Tis_variable_str(f_tid1); vstrtype2 = H5Tis_variable_str(f_tid2); /* no compare if either one but not both are variable string type */ if (vstrtype1 != vstrtype2) { - if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) + if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) parallel_print("Not comparable: <%s> or <%s> is of mixed string type\n", - obj1_name, obj2_name); + opts->obj_name[0], opts->obj_name[1]); + opts->not_cmp = 1; H5TOOLS_GOTO_DONE(0); } @@ -798,17 +1125,18 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, int j; hid_t memb_type1 = H5I_INVALID_HID; hid_t memb_type2 = H5I_INVALID_HID; - H5TOOLS_DEBUG("diff_can_type end - H5T_COMPOUND"); + H5TOOLS_DEBUG(" - H5T_COMPOUND"); nmembs1 = H5Tget_nmembers(f_tid1); nmembs2 = H5Tget_nmembers(f_tid2); if(nmembs1 != nmembs2) { - if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) { - parallel_print("Not comparable: <%s> has %d members ", obj1_name, nmembs1); - parallel_print("<%s> has %d members ", obj2_name, nmembs2); + if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) { + parallel_print("Not comparable: <%s> has %d members ", opts->obj_name[0], nmembs1); + parallel_print("<%s> has %d members ", opts->obj_name[1], nmembs2); parallel_print("\n"); } + opts->not_cmp = 1; H5TOOLS_GOTO_DONE(0); } @@ -817,9 +1145,7 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, memb_type1 = H5Tget_member_type(f_tid1, (unsigned)j); memb_type2 = H5Tget_member_type(f_tid2, (unsigned)j); - if (diff_can_type(memb_type1, memb_type2, rank1, rank2, - dims1, dims2, maxdim1, maxdim2, obj1_name, obj2_name, - opts, 1) != 1) { + if (diff_can_type(memb_type1, memb_type2, rank1, rank2, dims1, dims2, maxdim1, maxdim2, opts, 1) != 1) { opts->not_cmp = 1; H5Tclose(memb_type1); H5Tclose(memb_type2); @@ -838,19 +1164,17 @@ done: } +#if defined (H5DIFF_DEBUG_UNUSED) +/* this function is not currently used, but could be useful */ /*------------------------------------------------------------------------- * Function: print_sizes * * Purpose: Print datatype sizes *------------------------------------------------------------------------- */ -#if defined (H5DIFF_DEBUG) -void print_sizes( const char *obj1, - const char *obj2, - hid_t f_tid1, - hid_t f_tid2, - hid_t m_tid1, - hid_t m_tid2 ) +void print_sizes( const char *obj1, const char *obj2, hid_t f_tid1, hid_t f_tid2, hid_t m_tid1, hid_t m_tid2); + +void print_sizes( const char *obj1, const char *obj2, hid_t f_tid1, hid_t f_tid2, hid_t m_tid1, hid_t m_tid2) { size_t f_size1, f_size2; /* size of type in file */ size_t m_size1, m_size2; /* size of type in memory */ diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c index cc51e2c..55c69a7 100644 --- a/tools/lib/h5tools.c +++ b/tools/lib/h5tools.c @@ -29,28 +29,37 @@ int H5tools_INDENT_g = 0; /* global variables */ +H5E_auto2_t lib_func; +H5E_auto2_t tools_func; +void *lib_edata; +void *tools_edata; + hid_t H5tools_ERR_STACK_g = H5I_INVALID_HID; hid_t H5tools_ERR_CLS_g = H5I_INVALID_HID; hid_t H5E_tools_g = H5I_INVALID_HID; hid_t H5E_tools_min_id_g = H5I_INVALID_HID; hid_t H5E_tools_min_info_id_g = H5I_INVALID_HID; hid_t H5E_tools_min_dbg_id_g = H5I_INVALID_HID; -int compound_data; + FILE *rawattrstream = NULL; /* should initialize to stdout but gcc moans about it */ FILE *rawdatastream = NULL; /* should initialize to stdout but gcc moans about it */ FILE *rawinstream = NULL; /* should initialize to stdin but gcc moans about it */ FILE *rawoutstream = NULL; /* should initialize to stdout but gcc moans about it */ FILE *rawerrorstream = NULL; /* should initialize to stderr but gcc moans about it */ + int bin_output; /* binary output */ int bin_form = 0; /* binary form, default NATIVE */ int region_output; /* region output */ int oid_output; /* oid output */ int data_output; /* data output */ int attr_data_output; /* attribute data output */ +int compound_data; + unsigned packed_bits_num; /* number of packed bits to display */ unsigned packed_data_offset; /* offset of packed bits to display */ unsigned packed_data_length; /* length of packed bits to display */ unsigned long long packed_data_mask; /* mask in which packed bits to display */ + int enable_error_stack = 0; /* re-enable error stack; disable=0 enable=1 */ /* sort parameters */ @@ -103,6 +112,10 @@ const char *drivernames[] = { void h5tools_init(void) { + /* Disable error reporting */ + H5Eget_auto2(H5E_DEFAULT, &lib_func, &lib_edata); + H5Eset_auto2(H5E_DEFAULT, NULL, NULL); + if (!h5tools_init_g) { H5TOOLS_INIT_ERROR(); @@ -121,6 +134,29 @@ h5tools_init(void) h5tools_init_g++; } + + /* Disable tools error reporting */ + H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); + H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); +} + +/*------------------------------------------------------------------------- + * Function: h5tools_error_report + * + * Purpose: Enable error stack reporting after command line is parsed. + * + * Return: None + *------------------------------------------------------------------------- + */ +void +h5tools_error_report(void) +{ + if (h5tools_init_g) { + if (enable_error_stack > 0) { + H5Eset_auto2(H5E_DEFAULT, lib_func, lib_edata); + H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); + } + } } /*------------------------------------------------------------------------- @@ -137,16 +173,11 @@ h5tools_init(void) void h5tools_close(void) { - H5E_auto2_t tools_func; - void *tools_edata; - if (h5tools_init_g) { /* special case where only data is output to stdout */ if ((rawoutstream == NULL) && rawdatastream && (rawdatastream == stdout)) HDfprintf(rawdatastream, "\n"); - H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); - if (tools_func) H5Eprint2(H5tools_ERR_STACK_g, rawerrorstream); @@ -184,6 +215,10 @@ h5tools_close(void) /* Clean up the reference path table, if it's been used */ term_ref_path_table(); + /* Restore error stacks from init */ + H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); + H5Eset_auto2(H5E_DEFAULT, lib_func, lib_edata); + H5TOOLS_CLOSE_ERROR(); /* Shut down the library */ @@ -1090,8 +1125,8 @@ done: *------------------------------------------------------------------------- */ void -h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hsize_t elmtno, int secnum) +h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, + hsize_t elmtno, int secnum) { h5tools_str_t prefix; h5tools_str_t str; /*temporary for indentation */ @@ -1119,7 +1154,7 @@ h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, H5TOOLS_DEBUG("after CR elmtno=%ld, ctx->ndims=%d", elmtno, ctx->ndims); /* Calculate new prefix */ - h5tools_str_prefix(&prefix, info, elmtno, ctx->ndims, ctx); + h5tools_str_prefix(&prefix, info, elmtno, ctx); H5TOOLS_DEBUG("prefix=%s - str=%s", prefix.s, str.s); /* Write new prefix to output */ @@ -1186,8 +1221,8 @@ h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ void -h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hsize_t elmtno, hsize_t *ptdata, int secnum) +h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, + hsize_t elmtno, hsize_t *ptdata, int secnum) { h5tools_str_t prefix; h5tools_str_t str; /*temporary for indentation */ @@ -1211,7 +1246,7 @@ h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info, } /* Calculate new prefix */ - h5tools_str_region_prefix(&prefix, info, elmtno, ptdata, ctx->ndims, ctx->p_max_idx, ctx); + h5tools_str_region_prefix(&prefix, info, elmtno, ptdata, ctx); /* Write new prefix to output */ if (ctx->indent_level > 0) @@ -1284,9 +1319,8 @@ h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ hbool_t -h5tools_render_element(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos, - size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter) +h5tools_render_element(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, + h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter) { hbool_t dimension_break = TRUE; char *s = NULL; @@ -1455,9 +1489,8 @@ h5tools_render_element(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ hbool_t -h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos, - size_t ncols, hsize_t *ptdata, hsize_t local_elmt_counter, hsize_t elmt_counter) +h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, + h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t *ptdata, hsize_t local_elmt_counter, hsize_t elmt_counter) { hbool_t dimension_break = TRUE; char *s = NULL; @@ -1474,8 +1507,10 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, * If the element would split on multiple lines if printed at our * current location... */ - if (info->line_multi_new == 1 && (ctx->cur_column + h5tools_count_ncols(s) + - HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) > ncols) { + if (info->line_multi_new == 1 && + (ctx->cur_column + h5tools_count_ncols(s) + + HDstrlen(OPT(info->elmt_suf2, " ")) + + HDstrlen(OPT(info->line_suf, ""))) > ncols) { if (ctx->prev_multiline) { /* * ... and the previous element also occupied more than one @@ -1484,7 +1519,8 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; } else if ((ctx->prev_prefix_len + h5tools_count_ncols(s) + - HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) <= ncols) { + HDstrlen(OPT(info->elmt_suf2, " ")) + + HDstrlen(OPT(info->line_suf, ""))) <= ncols) { /* * ...but *could* fit on one line otherwise, then we * should end the current line and start this element on its @@ -1515,7 +1551,9 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, * beginning of the line. */ if (info->line_multi_new == 1 && ctx->prev_multiline && - (ctx->cur_column + h5tools_count_ncols(s) + HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) > ncols) + (ctx->cur_column + h5tools_count_ncols(s) + + HDstrlen(OPT(info->elmt_suf2, " ")) + + HDstrlen(OPT(info->line_suf, ""))) > ncols) ctx->need_prefix = TRUE; /* @@ -1543,7 +1581,9 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, * this check to happen for the first line */ if ((!info->skip_first || local_elmt_counter) && - (ctx->cur_column + HDstrlen(section) + HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) > ncols) + (ctx->cur_column + HDstrlen(section) + + HDstrlen(OPT(info->elmt_suf2, " ")) + + HDstrlen(OPT(info->line_suf, ""))) > ncols) ctx->need_prefix = 1; /* @@ -1589,27 +1629,65 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ void -init_acc_pos(h5tools_context_t *ctx, hsize_t *dims) +init_acc_pos(unsigned ndims, hsize_t *dims, hsize_t *acc, hsize_t *pos, hsize_t *p_min_idx) { int i; unsigned j; H5TOOLS_START_DEBUG(""); - if(ctx->ndims > 0) { - ctx->acc[ctx->ndims - 1] = 1; - for (i = ((int)ctx->ndims - 2); i >= 0; i--) { - ctx->acc[i] = ctx->acc[i + 1] * dims[i + 1]; - H5TOOLS_DEBUG("ctx->acc[%d]=%ld", i, ctx->acc[i]); + for (i = 0; (unsigned)i < ndims; i++) + p_min_idx[i] = 0; + + if(ndims > 0) { + acc[ndims - 1] = 1; + for (i = ((int)ndims - 2); i >= 0; i--) { + acc[i] = acc[i + 1] * dims[i + 1]; + H5TOOLS_DEBUG("acc[%d]=%ld", i, acc[i]); } - for (j = 0; j < ctx->ndims; j++) - ctx->pos[j] = 0; + for (j = 0; j < ndims; j++) + pos[j] = 0; } H5TOOLS_ENDDEBUG(""); } /*------------------------------------------------------------------------- + * Function: calc_acc_pos + * + * Purpose: Calculate the number of elements represented by a unit change + * in a certain index position. + * + * Return: void + *------------------------------------------------------------------------- + */ +hsize_t +calc_acc_pos(unsigned ndims, hsize_t elmtno, hsize_t *acc, hsize_t *pos) +{ + int i; + hsize_t curr_pos = elmtno; + + H5TOOLS_START_DEBUG(""); + + if(ndims > 0) { + for(i = 0; i < (int)ndims; i++) { + if(curr_pos > 0) { + H5TOOLS_DEBUG("curr_pos=%ld - ctx->acc[%d]=%ld", curr_pos, i, acc[i]); + pos[i] = curr_pos / acc[i]; + curr_pos -= acc[i] * pos[i]; + } + else + pos[i] = 0; + H5TOOLS_DEBUG("curr_pos=%ld - pos[%d]=%ld - acc[%d]=%ld", curr_pos, i, pos[i], i, acc[i]); + } + } + + H5TOOLS_ENDDEBUG(""); + + return curr_pos; +} + +/*------------------------------------------------------------------------- * Function: render_bin_output * * Purpose: Write one element of memory buffer to a binary file stream diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h index 2b6fffb..152ec1a 100644 --- a/tools/lib/h5tools.h +++ b/tools/lib/h5tools.h @@ -570,9 +570,6 @@ typedef struct h5tools_vfd_info_t { const char *name; } h5tools_vfd_info_t; -H5TOOLS_DLLVAR const char *volnames[]; -H5TOOLS_DLLVAR const char *drivernames[]; - /* This enum should match the entries in the above 'volnames' * since they are indices into the 'volnames' array. */ typedef enum { @@ -603,14 +600,22 @@ typedef enum { #include "h5tools_str.h" -H5TOOLS_DLLVAR h5tool_format_t h5tools_dataformat; -H5TOOLS_DLLVAR const h5tools_dump_header_t h5tools_standardformat; -H5TOOLS_DLLVAR const h5tools_dump_header_t* h5tools_dump_header_format; #ifdef __cplusplus extern "C" { #endif +H5TOOLS_DLLVAR const char *volnames[]; +H5TOOLS_DLLVAR const char *drivernames[]; + +H5TOOLS_DLLVAR h5tool_format_t h5tools_dataformat; +H5TOOLS_DLLVAR const h5tools_dump_header_t h5tools_standardformat; +H5TOOLS_DLLVAR const h5tools_dump_header_t* h5tools_dump_header_format; +H5TOOLS_DLLVAR H5E_auto2_t lib_func; +H5TOOLS_DLLVAR H5E_auto2_t tools_func; +H5TOOLS_DLLVAR void *lib_edata; +H5TOOLS_DLLVAR void *tools_edata; + H5TOOLS_DLLVAR unsigned packed_bits_num; /* number of packed bits to display */ H5TOOLS_DLLVAR unsigned packed_data_offset; /* offset of packed bits to display */ H5TOOLS_DLLVAR unsigned packed_data_length; /* length of packed bits to display */ @@ -644,14 +649,17 @@ H5TOOLS_DLLVAR int enable_error_stack; /* re-enable error stack; disable=0 e /* Definitions of useful routines */ H5TOOLS_DLL void h5tools_init(void); H5TOOLS_DLL void h5tools_close(void); + +H5TOOLS_DLL void h5tools_error_report(void); H5TOOLS_DLL int h5tools_set_data_output_file(const char *fname, int is_bin); H5TOOLS_DLL int h5tools_set_attr_output_file(const char *fname, int is_bin); H5TOOLS_DLL int h5tools_set_input_file(const char *fname, int is_bin); H5TOOLS_DLL int h5tools_set_output_file(const char *fname, int is_bin); H5TOOLS_DLL int h5tools_set_error_file(const char *fname, int is_bin); -H5TOOLS_DLL hid_t h5tools_get_fapl(hid_t prev_fapl_id, h5tools_vol_info_t *vol_info, - h5tools_vfd_info_t *vfd_info); -H5TOOLS_DLL herr_t h5tools_get_vfd_name(hid_t fapl_id, char *drivername, size_t drivername_size); + +H5TOOLS_DLL hid_t h5tools_get_fapl(hid_t prev_fapl_id, h5tools_vol_info_t *vol_info, h5tools_vfd_info_t *vfd_info); +H5TOOLS_DLL herr_t h5tools_get_vfd_name(hid_t fapl_id, + char *drivername, size_t drivername_size); H5TOOLS_DLL hid_t h5tools_fopen(const char *fname, unsigned flags, hid_t fapl, hbool_t use_specific_driver, char *drivername, size_t drivername_size); H5TOOLS_DLL hid_t h5tools_get_little_endian_type(hid_t type); @@ -659,36 +667,29 @@ H5TOOLS_DLL hid_t h5tools_get_big_endian_type(hid_t type); H5TOOLS_DLL htri_t h5tools_detect_vlen(hid_t tid); H5TOOLS_DLL htri_t h5tools_detect_vlen_str(hid_t tid); H5TOOLS_DLL hbool_t h5tools_is_obj_same(hid_t loc_id1, const char *name1, hid_t loc_id2, const char *name2); -H5TOOLS_DLL void init_acc_pos(h5tools_context_t *ctx, hsize_t *dims); +H5TOOLS_DLL void init_acc_pos(unsigned ndims, hsize_t *dims, hsize_t *acc, hsize_t *pos, hsize_t *p_min_idx); +H5TOOLS_DLL hsize_t calc_acc_pos(unsigned ndims, hsize_t elemtno, hsize_t *acc, hsize_t *pos); H5TOOLS_DLL hbool_t h5tools_is_zero(const void *_mem, size_t size); H5TOOLS_DLL int h5tools_canreadf(const char* name, hid_t dcpl_id); H5TOOLS_DLL int h5tools_can_encode(H5Z_filter_t filtn); -H5TOOLS_DLL void h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hsize_t elmtno, int secnum); -H5TOOLS_DLL void h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hsize_t elmtno, hsize_t *ptdata, int secnum); +H5TOOLS_DLL void h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, + hsize_t elmtno, int secnum); +H5TOOLS_DLL void h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, + hsize_t elmtno, hsize_t *ptdata, int secnum); H5TOOLS_DLL int render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t nelmts); -H5TOOLS_DLL int render_bin_output_region_data_blocks(hid_t region_id, FILE *stream, - hid_t container, unsigned ndims, hid_t type_id, hsize_t nblocks, hsize_t *ptdata); -H5TOOLS_DLL hbool_t render_bin_output_region_blocks(hid_t region_space, hid_t region_id, - FILE *stream, hid_t container); -H5TOOLS_DLL int render_bin_output_region_data_points(hid_t region_space, hid_t region_id, - FILE* stream, hid_t container, unsigned ndims, hid_t type_id, hsize_t npoints); -H5TOOLS_DLL hbool_t render_bin_output_region_points(hid_t region_space, hid_t region_id, - FILE *stream, hid_t container); - -H5TOOLS_DLL hbool_t h5tools_render_element(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos, - size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter); -H5TOOLS_DLL hbool_t h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, /*in,out*/ - h5tools_str_t *buffer, /*string into which to render */ - hsize_t *curr_pos, /*total data element position*/ - size_t ncols, hsize_t *ptdata, - hsize_t local_elmt_counter, /*element counter*/ - hsize_t elmt_counter); +H5TOOLS_DLL int render_bin_output_region_data_blocks(hid_t region_id, FILE *stream, hid_t container, + unsigned ndims, hid_t type_id, hsize_t nblocks, hsize_t *ptdata); +H5TOOLS_DLL hbool_t render_bin_output_region_blocks(hid_t region_space, hid_t region_id, FILE *stream, hid_t container); +H5TOOLS_DLL int render_bin_output_region_data_points(hid_t region_space, hid_t region_id, FILE* stream, hid_t container, + unsigned ndims, hid_t type_id, hsize_t npoints); +H5TOOLS_DLL hbool_t render_bin_output_region_points(hid_t region_space, hid_t region_id, FILE *stream, hid_t container); + +H5TOOLS_DLL hbool_t h5tools_render_element(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, h5tools_str_t *buffer, + hsize_t *curr_pos, size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter); +H5TOOLS_DLL hbool_t h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, h5tools_str_t *buffer, + hsize_t *curr_pos, size_t ncols, hsize_t *ptdata, hsize_t local_elmt_counter, hsize_t elmt_counter); #ifdef __cplusplus } diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c index 2477de2..4ba89fa 100644 --- a/tools/lib/h5tools_dump.c +++ b/tools/lib/h5tools_dump.c @@ -253,9 +253,8 @@ h5tools_dump_init(void) *------------------------------------------------------------------------- */ int -h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t container, - h5tools_context_t *ctx, /* in,out */ - unsigned flags, hsize_t nelmts, hid_t type, void *_mem) +h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, /* in,out */ + hid_t container, unsigned flags, hsize_t nelmts, hid_t type, void *_mem) { unsigned char *mem = (unsigned char*) _mem; hsize_t i; /* element counter */ @@ -568,9 +567,11 @@ h5tools_print_region_data_blocks(hid_t region_id, FILE *stream, const h5tool_for ctx.indent_level++; if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) { /* assume entire data space to be printed */ + init_acc_pos(ctx.ndims, total_size, ctx.acc, ctx.pos, ctx.p_min_idx); + + /* reset data space to be printed */ for (indx = 0; indx < (unsigned)ctx.ndims; indx++) ctx.p_min_idx[indx] = start[indx]; - init_acc_pos(&ctx, total_size); /* print the data */ region_flags = START_OF_DATA; @@ -939,9 +940,7 @@ h5tools_print_region_data_points(hid_t region_space, hid_t region_id, if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) { /* assume entire data space to be printed */ - for (indx = 0; indx < ctx.ndims; indx++) - ctx.p_min_idx[indx] = 0; - init_acc_pos(&ctx, total_size); + init_acc_pos(ctx.ndims, total_size, ctx.acc, ctx.pos, ctx.p_min_idx); /* print the data */ region_flags = START_OF_DATA; @@ -1253,7 +1252,6 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c size_t j; /* counters */ hsize_t zero[1] = {0}; /* vector of zeros */ unsigned int flags; /* buffer extent flags */ - hsize_t elmtno; /* elemnt index */ hsize_t low[H5S_MAX_RANK]; /* low bound of hyperslab */ hsize_t high[H5S_MAX_RANK]; /* higher bound of hyperslab */ size_t p_type_nbytes; /* size of memory type */ @@ -1274,9 +1272,6 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c if ((size_t) ctx->ndims > NELMTS(sm_size)) H5TOOLS_THROW(FAIL, "ndims and sm_size comparision failed"); - if (ctx->ndims > 0) - init_acc_pos(ctx, total_size); - size_row_block = ctx->sset->block.data[row_dim]; /* Check if we have VL data in the dataset's datatype */ @@ -1347,27 +1342,25 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c for (i = 0; i < ctx->ndims; i++) ctx->p_max_idx[i] = ctx->p_min_idx[i] + MIN(total_size[i], sm_size[i]); - /* print array indices. get the lower bound of the hyperslab and calulate - the element position at the start of hyperslab */ + /* print array indices. get the lower bound of the hyperslab and calculate + the element position at the start of hyperslab */ if(H5Sget_select_bounds(f_space, low, high) < 0) H5TOOLS_THROW(FAIL, "H5Sget_select_bounds failed"); - elmtno = 0; + /* initialize the current stripmine position; this is necessary to print the array indices */ + ctx->sm_pos = 0; for (i = 0; i < (size_t) ctx->ndims - 1; i++) { hsize_t offset = 1; /* accumulation of the previous dimensions */ for (j = i + 1; j < (size_t) ctx->ndims; j++) offset *= total_size[j]; - elmtno += low[i] * offset; + ctx->sm_pos += low[i] * offset; } - elmtno += low[ctx->ndims - 1]; + ctx->sm_pos += low[ctx->ndims - 1]; - /* initialize the current stripmine position; this is necessary to print the array - indices */ - ctx->sm_pos = elmtno; ctx->need_prefix = TRUE; - if(h5tools_dump_simple_data(stream, info, dset, ctx, flags, sm_nelmts, p_type, sm_buf) < 0) + if(h5tools_dump_simple_data(stream, info, ctx, dset, flags, sm_nelmts, p_type, sm_buf) < 0) H5TOOLS_THROW(FAIL, "h5tools_dump_simple_data failed"); /* Reclaim any VL memory, if necessary */ @@ -1571,9 +1564,8 @@ static herr_t h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t dset, hid_t p_type) { int sndims; - hid_t f_space = H5I_INVALID_HID; /* file data space */ - size_t i; /* counters */ - hsize_t total_size[H5S_MAX_RANK];/* total size of dataset*/ + hid_t f_space = H5I_INVALID_HID; /* file data space */ + hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/ hbool_t past_catch = FALSE; herr_t ret_value = SUCCEED; @@ -1586,12 +1578,10 @@ h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_co ctx->ndims = (unsigned)sndims; /* assume entire data space to be printed */ - if (ctx->ndims > 0) - for (i = 0; i < (size_t) ctx->ndims; i++) - ctx->p_min_idx[i] = 0; - if(H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) H5TOOLS_THROW(FAIL, "H5Sget_simple_extent_dims failed"); + init_acc_pos(ctx->ndims, total_size, ctx->acc, ctx->pos, ctx->p_min_idx); + ctx->size_last_dim = total_size[ctx->ndims - 1]; /* Set the compound datatype field list for display */ @@ -1623,38 +1613,37 @@ CATCH *------------------------------------------------------------------------- */ static int -h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, - hid_t dset, hid_t p_type) +h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t dset, hid_t p_type) { - hid_t f_space = H5I_INVALID_HID; /* file data space */ - hsize_t elmtno; /* counter */ - size_t i; /* counter */ - int sndims; /* rank of dataspace */ - int carry; /* counter carry value */ - hsize_t zero[8]; /* vector of zeros */ - unsigned int flags; /* buffer extent flags */ - hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/ - hbool_t past_catch = FALSE; + hid_t f_space = H5I_INVALID_HID; /* file data space */ + hsize_t elmtno; /* counter */ + size_t i = 0; /* counter */ + int sndims; /* rank of dataspace */ + int carry; /* counter carry value */ + hsize_t zero[8]; /* vector of zeros */ + unsigned int flags; /* buffer extent flags */ + hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/ + hbool_t past_catch = FALSE; /* Print info */ - size_t p_type_nbytes; /* size of memory type */ - hsize_t p_nelmts; /* total selected elmts */ + size_t p_type_nbytes; /* size of memory type */ + hsize_t p_nelmts; /* total selected elmts */ /* Stripmine info */ - hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ - hsize_t sm_nbytes; /* bytes per stripmine */ - hsize_t sm_nelmts; /* elements per stripmine*/ - unsigned char *sm_buf = NULL; /* buffer for raw data */ - hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */ + hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ + hsize_t sm_nbytes; /* bytes per stripmine */ + hsize_t sm_nelmts; /* elements per stripmine*/ + unsigned char *sm_buf = NULL; /* buffer for raw data */ + hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */ /* Hyperslab info */ - hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */ - hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */ - hsize_t hs_nelmts; /* elements in request */ + hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */ + hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */ + hsize_t hs_nelmts; /* elements in request */ /* VL data special information */ - unsigned int vl_data = 0; /* contains VL datatypes */ - int ret_value = 0; + unsigned int vl_data = 0; /* contains VL datatypes */ + int ret_value = 0; H5TOOLS_START_DEBUG(""); if (H5I_INVALID_HID == (f_space = H5Dget_space(dset))) @@ -1670,11 +1659,8 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont H5TOOLS_GOTO_ERROR((-1), "ctx->ndims > NELMTS(sm_size) failed"); /* Assume entire data space to be printed */ - if (ctx->ndims > 0) - for (i = 0; i < (size_t)ctx->ndims; i++) - ctx->p_min_idx[i] = 0; - H5Sget_simple_extent_dims(f_space, total_size, NULL); + init_acc_pos(ctx->ndims, total_size, ctx->acc, ctx->pos, ctx->p_min_idx); /* calculate the number of elements we're going to print */ p_nelmts = 1; @@ -1720,8 +1706,6 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont sm_space = H5Screate_simple(1, &sm_nelmts, NULL); H5TOOLS_DEBUG("sm_nelmts size:%ld", sm_nelmts); - if (ctx->ndims > 0) - init_acc_pos(ctx, total_size); H5TOOLS_DEBUG("ctx->ndims:%d", ctx->ndims); /* The stripmine loop */ @@ -1762,7 +1746,7 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont indices */ ctx->sm_pos = elmtno; - if(h5tools_dump_simple_data(stream, info, dset, ctx, flags, hs_nelmts, p_type, sm_buf) < 0) + if(h5tools_dump_simple_data(stream, info, ctx, dset, flags, hs_nelmts, p_type, sm_buf) < 0) H5TOOLS_ERROR((-1), "h5tools_dump_simple_data failed"); /* Reclaim any VL memory, if necessary */ @@ -1841,11 +1825,8 @@ h5tools_dump_simple_mem(FILE *stream, const h5tool_format_t *info, h5tools_conte H5TOOLS_THROW((-1), "ctx->ndims > NELMTS(ctx->p_min_idx) failed"); /* Assume entire data space to be printed */ - if (ctx->ndims > 0) - for (i = 0; i < (size_t)ctx->ndims; i++) - ctx->p_min_idx[i] = 0; - H5Sget_simple_extent_dims(f_space, total_size, NULL); + init_acc_pos(ctx->ndims, total_size, ctx->acc, ctx->pos, ctx->p_min_idx); /* calculate the number of elements we're going to print */ p_nelmts = 1; @@ -1868,14 +1849,12 @@ h5tools_dump_simple_mem(FILE *stream, const h5tool_format_t *info, h5tools_conte alloc_size = p_nelmts * H5Tget_size(p_type); HDassert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/ if (NULL != (buf = (unsigned char *)HDmalloc((size_t)alloc_size))) { - if (ctx->ndims > 0) - init_acc_pos(ctx, total_size); H5TOOLS_DEBUG("ctx->ndims:%d", ctx->ndims); H5TOOLS_DEBUG("Read the data"); /* Read the data */ if (H5Aread(attr_id, p_type, buf) >= 0) { - if(h5tools_dump_simple_data(stream, info, attr_id, ctx, START_OF_DATA | END_OF_DATA, p_nelmts, p_type, buf) < 0) + if(h5tools_dump_simple_data(stream, info, ctx, attr_id, START_OF_DATA | END_OF_DATA, p_nelmts, p_type, buf) < 0) H5TOOLS_ERROR((-1), "h5tools_dump_simple_data failed"); /* Reclaim any VL memory, if necessary */ @@ -3987,6 +3966,226 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tool } /*------------------------------------------------------------------------- + * Function: dump_reference + * + * Purpose: Dump reference data + * + * Return: void + *------------------------------------------------------------------------- + */ +void +h5tools_dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t container, H5R_ref_t *ref_buf, int ndims) +{ + hid_t new_obj_id = H5I_INVALID_HID; + hid_t new_obj_sid = H5I_INVALID_HID; + hsize_t elmt_counter = 0; /*counts the # elements printed. */ + size_t ncols = 80; /* available output width */ + int i; + hsize_t curr_pos = 0; /* total data element position */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t datactx; /* print context */ + + H5TOOLS_START_DEBUG(""); + + datactx = *ctx; /* print context */ + /* Assume entire data space to be printed */ + datactx.need_prefix = TRUE; + + HDmemset(&buffer, 0, sizeof(h5tools_str_t)); + for(i = 0; i < ndims; i++, datactx.cur_elmt++, elmt_counter++) { + H5O_type_t obj_type = -1; /* Object type */ + H5R_type_t ref_type; /* Reference type */ + + H5TOOLS_DEBUG("reference loop:%d with curr_pos=%ld", i, curr_pos); + + datactx.need_prefix = TRUE; + h5tools_str_reset(&buffer); + H5TOOLS_DEBUG("reference loop - h5tools_str_sprint with H5T_STD_REF:%d", i); + h5tools_str_sprint(&buffer, info, container, H5T_STD_REF, &ref_buf[i], &datactx); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, (hsize_t)ndims); + + ref_type = H5Rget_type((const H5R_ref_t *)&ref_buf[i]); + switch (ref_type) { + case H5R_OBJECT1: + H5TOOLS_DEBUG("ref_type is H5R_OBJECT1"); + if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_DATASET: + if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + datactx.indent_level++; + h5tools_dump_data(stream, info, &datactx, new_obj_id, TRUE); + //h5tools_dump_dset(stream, info, &datactx, new_obj_id); + datactx.indent_level--; + if(H5Dclose(new_obj_id) < 0) + H5TOOLS_INFO("H5Dclose H5R_OBJECT1:H5O_TYPE_DATASET failed"); + } + else + H5TOOLS_INFO("H5Ropen_object H5R_OBJECT1:H5O_TYPE_DATASET failed"); + break; + + case H5O_TYPE_GROUP: + case H5O_TYPE_NAMED_DATATYPE: + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + break; + } /* end switch */ + } + else + H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT1 failed"); + break; + case H5R_DATASET_REGION1: + H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1"); + if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + datactx.indent_level++; + h5tools_dump_data(stream, info, &datactx, new_obj_id, TRUE); + //h5tools_dump_dset(stream, info, &datactx, new_obj_id); + datactx.indent_level--; + if(H5Dclose(new_obj_id) < 0) + H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION1 failed"); + } + else + H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed"); + break; + case H5R_OBJECT2: + H5TOOLS_DEBUG("ref_type is H5R_OBJECT2"); + if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_GROUP: + break; + + case H5O_TYPE_DATASET: + if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + datactx.indent_level++; + h5tools_dump_data(stream, info, &datactx, new_obj_id, TRUE); + //h5tools_dump_dset(stream, info, &datactx, new_obj_id); + datactx.indent_level--; + if(H5Oclose(new_obj_id) < 0) + H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed"); + } + else + H5TOOLS_INFO("H5Ropen_object H5R_OBJECT2 failed"); + break; + + case H5O_TYPE_NAMED_DATATYPE: + break; + + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + break; + } /* end switch */ + } + else + H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT2 failed"); + break; + case H5R_DATASET_REGION2: + H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2"); + + if (info->line_ncols > 0) + ncols = info->line_ncols; + + /* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */ + if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0) + H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed"); + else { + if((new_obj_sid = H5Ropen_region(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) { + H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2"); + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " {"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + + datactx.need_prefix = TRUE; + datactx.indent_level++; + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "NULL"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + datactx.indent_level--; + datactx.need_prefix = TRUE; + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "}"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } + else { + H5S_sel_type region_type; + + region_type = H5Sget_select_type(new_obj_sid); + if(region_type == H5S_SEL_POINTS) { + /* Print point information */ + H5TOOLS_DEBUG("H5S_SEL_POINTS H5R_DATASET_REGION2"); + h5tools_dump_region_data_points(new_obj_sid, new_obj_id, stream, info, &datactx, + &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter); + } + else if(region_type == H5S_SEL_HYPERSLABS) { + /* Print block information */ + H5TOOLS_DEBUG("H5S_SEL_HYPERSLABS H5R_DATASET_REGION2"); + h5tools_dump_region_data_blocks(new_obj_sid, new_obj_id, stream, info, &datactx, + &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter); + } + else + H5TOOLS_INFO("invalid region type"); + } /* end else to if (h5tools_is_zero(... */ + if(H5Sclose(new_obj_sid) < 0) + H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed"); + } + else + H5TOOLS_INFO("H5Ropen_region H5R_DATASET_REGION2 failed"); + if(H5Dclose(new_obj_id) < 0) + H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed"); + } + break; + case H5R_ATTR: + H5TOOLS_DEBUG("ref_type is H5R_ATTR"); + if((new_obj_id = H5Ropen_attr(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + h5tools_dump_region_attribute(new_obj_id, stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + if(H5Aclose(new_obj_id) < 0) + H5TOOLS_INFO("H5Aclose H5R_ATTR failed"); + } + else { + H5TOOLS_DEBUG("NULL H5R_ATTR"); + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, " {"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + + datactx.need_prefix = TRUE; + datactx.indent_level++; + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "NULL"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + datactx.indent_level--; + datactx.need_prefix = TRUE; + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "}"); + h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + + H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed"); + } + break; + case H5R_BADTYPE: + case H5R_MAXTYPE: + default: + break; + } /* end switch */ + + if(H5Rdestroy(&ref_buf[i]) < 0) + H5TOOLS_INFO("H5Rdestroy failed"); + + H5TOOLS_DEBUG("finished reference loop:%d",i); + } /* end for(i = 0; i < ndims; i++, ctx->cur_elmt++, elmt_counter++) */ + + h5tools_str_close(&buffer); + + H5TOOLS_ENDDEBUG(""); +} + +/*------------------------------------------------------------------------- * Function: dump_data * * Purpose: Dump attribute, obj_data is FALSE, or dataset data, obj_data is TRUE @@ -3999,13 +4198,9 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t * { H5S_class_t space_type; int ndims; - size_t i; hid_t space = H5I_INVALID_HID; hid_t f_type = H5I_INVALID_HID; - hid_t new_obj_id = H5I_INVALID_HID; - hid_t new_obj_sid = H5I_INVALID_HID; hsize_t total_size[H5S_MAX_RANK]; - hsize_t elmt_counter = 0; /*counts the # elements printed. */ int status = -1; h5tools_context_t datactx; /* print context */ h5tools_str_t buffer; /* string into which to render */ @@ -4070,13 +4265,9 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t * H5TOOLS_DEBUG("ndims=%d - datactx.ndims=%d", ndims, datactx.ndims); /* Assume entire data space to be printed */ - if (datactx.ndims > 0) - for (i = 0; i < (size_t)datactx.ndims; i++) - datactx.p_min_idx[i] = 0; - H5Sget_simple_extent_dims(space, total_size, NULL); - if (datactx.ndims > 0) - init_acc_pos(&datactx, total_size); + init_acc_pos(datactx.ndims, total_size, datactx.acc, datactx.pos, datactx.p_min_idx); + datactx.need_prefix = TRUE; if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) { @@ -4094,197 +4285,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t * H5TOOLS_GOTO_DONE_NO_RET(); } } - for (i = 0; i < (size_t)ndims; i++, datactx.cur_elmt++, elmt_counter++) { - H5O_type_t obj_type = -1; /* Object type */ - H5R_type_t ref_type; /* Reference type */ - - H5TOOLS_DEBUG("reference loop:%d with curr_pos=%ld", i, curr_pos); - - datactx.need_prefix = TRUE; - h5tools_str_reset(&buffer); - H5TOOLS_DEBUG("reference loop - h5tools_str_sprint with H5T_STD_REF:%d", i); - h5tools_str_sprint(&buffer, &outputformat, obj_id, H5T_STD_REF, &ref_buf[i], &datactx); - h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, (hsize_t)ndims); - - ref_type = H5Rget_type((const H5R_ref_t *)&ref_buf[i]); - switch (ref_type) { - case H5R_OBJECT1: - H5TOOLS_DEBUG("ref_type is H5R_OBJECT1"); - if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { - switch (obj_type) { - case H5O_TYPE_DATASET: - if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - datactx.indent_level++; - h5tools_dump_data(stream, &outputformat, &datactx, new_obj_id, TRUE); - datactx.indent_level--; - if(H5Dclose(new_obj_id) < 0) - H5TOOLS_INFO("H5Dclose H5R_OBJECT1:H5O_TYPE_DATASET failed"); - } - else - H5TOOLS_INFO("H5Ropen_object H5R_OBJECT1:H5O_TYPE_DATASET failed"); - break; - - case H5O_TYPE_GROUP: - case H5O_TYPE_NAMED_DATATYPE: - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - break; - } /* end switch */ - } - else - H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT1 failed"); - break; - case H5R_DATASET_REGION1: - H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1"); - if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - datactx.indent_level++; - h5tools_dump_data(stream, &outputformat, &datactx, new_obj_id, TRUE); - datactx.indent_level--; - if(H5Dclose(new_obj_id) < 0) - H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION1 failed"); - } - else - H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed"); - break; - case H5R_OBJECT2: - H5TOOLS_DEBUG("ref_type is H5R_OBJECT2"); - if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { - switch (obj_type) { - case H5O_TYPE_GROUP: - break; - - case H5O_TYPE_DATASET: - if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - datactx.indent_level++; - h5tools_dump_data(stream, &outputformat, &datactx, new_obj_id, TRUE); - datactx.indent_level--; - if(H5Oclose(new_obj_id) < 0) - H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed"); - } - else - H5TOOLS_INFO("H5Ropen_object H5R_OBJECT2 failed"); - break; - - case H5O_TYPE_NAMED_DATATYPE: - break; - - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - break; - } /* end switch */ - } - else - H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT2 failed"); - break; - case H5R_DATASET_REGION2: - H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2"); - - if (outputformat.line_ncols > 0) - ncols = outputformat.line_ncols; - - /* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */ - if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0) - H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed"); - else { - if((new_obj_sid = H5Ropen_region(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) { - H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2"); - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " {"); - h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - - datactx.indent_level++; - datactx.need_prefix = TRUE; - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "NULL"); - h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - - datactx.indent_level--; - datactx.need_prefix = TRUE; - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "}"); - h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - } - else { - H5S_sel_type region_type; - - region_type = H5Sget_select_type(new_obj_sid); - if(region_type == H5S_SEL_POINTS) { - /* Print point information */ - H5TOOLS_DEBUG("H5S_SEL_POINTS H5R_DATASET_REGION2"); - h5tools_dump_region_data_points(new_obj_sid, new_obj_id, stream, &outputformat, &datactx, - &buffer, &curr_pos, ncols, i, elmt_counter); - } - else if(region_type == H5S_SEL_HYPERSLABS) { - /* Print block information */ - H5TOOLS_DEBUG("H5S_SEL_HYPERSLABS H5R_DATASET_REGION2"); - h5tools_dump_region_data_blocks(new_obj_sid, new_obj_id, stream, &outputformat, &datactx, - &buffer, &curr_pos, ncols, i, elmt_counter); - } - else - H5TOOLS_INFO("invalid region type"); - } /* end else to if (h5tools_is_zero(... */ - if(H5Sclose(new_obj_sid) < 0) - H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed"); - } - else - H5TOOLS_INFO("H5Ropen_region H5R_DATASET_REGION2 failed"); - if(H5Dclose(new_obj_id) < 0) - H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed"); - } - break; - case H5R_ATTR: - H5TOOLS_DEBUG("ref_type is H5R_ATTR"); - if((new_obj_id = H5Ropen_attr(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - h5tools_dump_region_attribute(new_obj_id, stream, &outputformat, &datactx, - &buffer, &curr_pos, ncols, i, elmt_counter); - if(H5Aclose(new_obj_id) < 0) - H5TOOLS_INFO("H5Aclose H5R_ATTR failed"); - } - else { - H5TOOLS_DEBUG("NULL H5R_ATTR"); - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " {"); - h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - - datactx.indent_level++; - datactx.need_prefix = TRUE; - - datactx.indent_level++; - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "NULL"); - h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - datactx.indent_level--; - - datactx.indent_level--; - datactx.need_prefix = TRUE; - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "}"); - h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - - H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed"); - } - break; - case H5R_BADTYPE: - case H5R_MAXTYPE: - default: - break; - } /* end switch */ - - if(H5Rdestroy(&ref_buf[i]) < 0) - H5TOOLS_INFO("H5Rdestroy failed"); - - H5TOOLS_DEBUG("finished reference loop:%d",i); - } /* end for(i = 0; i < ndims; i++, datactx->cur_elmt++, elmt_counter++) */ + h5tools_dump_reference(stream, &outputformat, &datactx, obj_id, ref_buf, ndims); HDfree(ref_buf); } ctx->indent_level--; diff --git a/tools/lib/h5tools_dump.h b/tools/lib/h5tools_dump.h index 2cd0bc1..add2e46 100644 --- a/tools/lib/h5tools_dump.h +++ b/tools/lib/h5tools_dump.h @@ -36,63 +36,53 @@ H5TOOLS_DLLVAR table_t *h5dump_type_table; /*type table reference for datatype /* Definitions of useful routines */ H5TOOLS_DLL void h5tools_dump_init(void); -H5TOOLS_DLL int h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, hid_t dset); -H5TOOLS_DLL int h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, hid_t obj_id); -H5TOOLS_DLL int h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t container, - h5tools_context_t *ctx/*in,out*/, unsigned flags, - hsize_t nelmts, hid_t type, void *_mem); -H5TOOLS_DLL void h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, hid_t type); -H5TOOLS_DLL void h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, hid_t space); -H5TOOLS_DLL void h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, const char *attr_name, hid_t attr_id); -H5TOOLS_DLL void h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, hid_t oid); -H5TOOLS_DLL void h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, hid_t dcpl, hid_t type_id, hid_t obj_id); -H5TOOLS_DLL void h5tools_dump_comment(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, hid_t obj_id); -H5TOOLS_DLL void h5tools_dump_data(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hid_t obj_id, int obj_data); +H5TOOLS_DLL int h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + hid_t dset); +H5TOOLS_DLL int h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + hid_t obj_id); +H5TOOLS_DLL int h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + hid_t container, unsigned flags, hsize_t nelmts, hid_t type, void *_mem); +H5TOOLS_DLL void h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + hid_t type); +H5TOOLS_DLL void h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + hid_t space); +H5TOOLS_DLL void h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + const char *attr_name, hid_t attr_id); +H5TOOLS_DLL void h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + hid_t oid); +H5TOOLS_DLL void h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + hid_t dcpl, hid_t type_id, hid_t obj_id); +H5TOOLS_DLL void h5tools_dump_comment(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + hid_t obj_id); +H5TOOLS_DLL void h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, + hid_t obj_id, int obj_data); +H5TOOLS_DLL void h5tools_dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, + hid_t container, H5R_ref_t *ref_buf, int ndims); H5TOOLS_DLL hbool_t h5tools_dump_region_attribute(hid_t region_id, - FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, - h5tools_str_t *buffer/*string into which to render */, - hsize_t *curr_pos/*total data element position*/, - size_t ncols, hsize_t region_elmt_counter/*element counter*/, - hsize_t elmt_counter); + FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t region_elmt_counter, hsize_t elmt_counter); H5TOOLS_DLL hbool_t h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, - FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, - h5tools_str_t *buffer/*string into which to render */, - hsize_t *curr_pos/*total data element position*/, - size_t ncols, hsize_t region_elmt_counter/*element counter*/, - hsize_t elmt_counter); + FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t region_elmt_counter, hsize_t elmt_counter); H5TOOLS_DLL hbool_t h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id, - FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx/*in,out*/, - h5tools_str_t *buffer/*string into which to render */, - hsize_t *curr_pos/*total data element position*/, - size_t ncols, hsize_t region_elmt_counter/*element counter*/, - hsize_t elmt_counter); + FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, + h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t region_elmt_counter, hsize_t elmt_counter); -H5TOOLS_DLL int h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer/*in,out*/, - const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, +H5TOOLS_DLL int h5tools_print_datatype(FILE *stream, + h5tools_str_t *buffer/*in,out*/, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t type, int object_search); H5TOOLS_DLL int h5tools_print_dataspace(h5tools_str_t *buffer/*in,out*/, hid_t space); -H5TOOLS_DLL int h5tools_print_enum(FILE *stream, h5tools_str_t *buffer/*in,out*/, - const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, +H5TOOLS_DLL int h5tools_print_enum(FILE *stream, + h5tools_str_t *buffer/*in,out*/, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t type); -H5TOOLS_DLL void h5tools_print_fill_value(h5tools_str_t *buffer/*in,out*/, - const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, +H5TOOLS_DLL void h5tools_print_fill_value( + h5tools_str_t *buffer/*in,out*/, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t dcpl, hid_t type_id, hid_t obj_id); H5TOOLS_DLL void h5tools_print_packed_bits(h5tools_str_t *buffer/*in,out*/, hid_t type); + #ifdef __cplusplus } #endif diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c index 5c777a9..1c573a7 100644 --- a/tools/lib/h5tools_str.c +++ b/tools/lib/h5tools_str.c @@ -278,47 +278,28 @@ h5tools_str_fmt(h5tools_str_t *str/*in,out*/, size_t start, const char *fmt) * Purpose: Renders the line prefix value into string STR. * * Return: Success: Pointer to the prefix. - * * Failure: NULL - * - * Programmer: Robb Matzke - * Thursday, July 23, 1998 *------------------------------------------------------------------------- */ char * -h5tools_str_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info, - hsize_t elmtno, unsigned ndims, h5tools_context_t *ctx) +h5tools_str_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info, hsize_t elmtno, + h5tools_context_t *ctx) { size_t i = 0; - hsize_t curr_pos = elmtno; H5TOOLS_START_DEBUG(""); H5TOOLS_DEBUG("elmtno=%ld, ctx->ndims=%d", elmtno, ctx->ndims); h5tools_str_reset(str); - H5TOOLS_DEBUG("ndims=%d", ndims); - if(ndims > 0) { - /* - * Calculate the number of elements represented by a unit change in a - * certain index position. - */ - for(i = 0; i < (size_t) ndims; i++) { - H5TOOLS_DEBUG("curr_pos=%ld - ctx->acc[%d]=%ld", curr_pos, i, ctx->acc[i]); - ctx->pos[i] = curr_pos / ctx->acc[i]; - curr_pos -= ctx->acc[i] * ctx->pos[i]; - H5TOOLS_DEBUG("curr_pos=%ld - ctx->pos[%d]=%ld - ctx->acc[%d]=%ld", curr_pos, i, ctx->pos[i], i, ctx->acc[i]); - } - HDassert(curr_pos == 0); - + calc_acc_pos(ctx->ndims, elmtno, ctx->acc, ctx->pos); + if(ctx->ndims > 0) { /* Print the index values */ - for(i = 0; i < (size_t) ndims; i++) { + for(i = 0; i < (size_t) ctx->ndims; i++) { if (i) h5tools_str_append(str, "%s", OPT(info->idx_sep, ",")); - h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), - (hsize_t) ctx->pos[i]); - + h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t) ctx->pos[i]); } } else /* Scalar */ @@ -338,52 +319,35 @@ h5tools_str_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info, * * Return: Success: Pointer to the prefix. * Failure: NULL - * - * In/Out: - * h5tools_context_t *ctx - * h5tools_str_t *str *------------------------------------------------------------------------- */ char * -h5tools_str_region_prefix(h5tools_str_t *str, const h5tool_format_t *info, - hsize_t elmtno, hsize_t *ptdata, unsigned ndims, hsize_t max_idx[], - h5tools_context_t *ctx) +h5tools_str_region_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info, hsize_t elmtno, + hsize_t *ptdata, h5tools_context_t *ctx) { size_t i = 0; - hsize_t curr_pos = elmtno; - hsize_t p_prod[H5S_MAX_RANK]; - - h5tools_str_reset(str); - if(ndims > 0) { - /* - * Calculate the number of elements represented by a unit change in a - * certain index position. - */ - for(i = ndims - 1, p_prod[ndims - 1] = 1; i > 0; --i) - p_prod[i - 1] = (max_idx[i]) * p_prod[i]; + H5TOOLS_START_DEBUG(""); - for(i = 0; i < (size_t) ndims; i++) { - if(curr_pos > 0) { - ctx->pos[i] = curr_pos / p_prod[i]; - curr_pos -= p_prod[i] * ctx->pos[i]; - } - else - ctx->pos[i] = 0; - ctx->pos[i] += (unsigned long) ptdata[ctx->sm_pos+i]; - } + H5TOOLS_DEBUG("elmtno=%ld, ctx->ndims=%d", elmtno, ctx->ndims); + h5tools_str_reset(str); + calc_acc_pos(ctx->ndims, elmtno, ctx->acc, ctx->pos); + if(ctx->ndims > 0) { /* Print the index values */ - for(i = 0; i < (size_t) ndims; i++) { - if(i) + for(i = 0; i < (size_t) ctx->ndims; i++) { + ctx->pos[i] += (unsigned long) ptdata[ctx->sm_pos+i]; + if (i) h5tools_str_append(str, "%s", OPT(info->idx_sep, ",")); h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t) ctx->pos[i]); - } - } /* if (ndims > 0) */ + } else /* Scalar */ - h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t) 0); + h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t)0); + H5TOOLS_DEBUG("str=%s", str->s); + + H5TOOLS_ENDDEBUG(""); /* Add prefix and suffix to the index */ return h5tools_str_fmt(str, (size_t)0, OPT(info->idx_fmt, "%s: ")); @@ -708,6 +672,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai if(info->raw) { size_t i; + H5TOOLS_DEBUG("info->raw"); if(1 == nsize) h5tools_str_append(str, OPT(info->fmt_raw, "0x%02x"), ucp_vp[0]); else @@ -718,8 +683,11 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai } } else { - if((type_class = H5Tget_class(type)) < 0) + H5TOOLS_DEBUG("H5Tget_class(type)"); + if((type_class = H5Tget_class(type)) < 0) { + H5TOOLS_ENDDEBUG(" with %s", "NULL"); return NULL; + } switch (type_class) { case H5T_FLOAT: H5TOOLS_DEBUG("H5T_FLOAT"); diff --git a/tools/lib/h5tools_str.h b/tools/lib/h5tools_str.h index 02bfe40..074e86d 100644 --- a/tools/lib/h5tools_str.h +++ b/tools/lib/h5tools_str.h @@ -31,13 +31,12 @@ H5TOOLS_DLL char *h5tools_str_reset(h5tools_str_t *str); H5TOOLS_DLL char *h5tools_str_trunc(h5tools_str_t *str, size_t size); H5TOOLS_DLL char *h5tools_str_fmt(h5tools_str_t *str, size_t start, const char *fmt); H5TOOLS_DLL char *h5tools_str_prefix(h5tools_str_t *str, const h5tool_format_t *info, - hsize_t elmtno, unsigned ndims, h5tools_context_t *ctx); + hsize_t elmtno, h5tools_context_t *ctx); /* * new functions needed to display region reference data */ H5TOOLS_DLL char *h5tools_str_region_prefix(h5tools_str_t *str, const h5tool_format_t *info, - hsize_t elmtno, hsize_t *ptdata, unsigned ndims, - hsize_t max_idx[], h5tools_context_t *ctx); + hsize_t elmtno, hsize_t *ptdata, h5tools_context_t *ctx); H5TOOLS_DLL void h5tools_str_dump_space_slabs(h5tools_str_t *, hid_t, const h5tool_format_t *, h5tools_context_t *ctx); H5TOOLS_DLL void h5tools_str_dump_space_blocks(h5tools_str_t *, hid_t, const h5tool_format_t *); H5TOOLS_DLL void h5tools_str_dump_space_points(h5tools_str_t *, hid_t, const h5tool_format_t *); diff --git a/tools/lib/io_timer.c b/tools/lib/io_timer.c index 472824b..5c0c31d 100644 --- a/tools/lib/io_timer.c +++ b/tools/lib/io_timer.c @@ -23,7 +23,6 @@ */ #include "H5private.h" -#include "hdf5.h" #include "io_timer.h" diff --git a/tools/src/h5copy/h5copy.c b/tools/src/h5copy/h5copy.c index 8805d08..5b19ae7 100644 --- a/tools/src/h5copy/h5copy.c +++ b/tools/src/h5copy/h5copy.c @@ -207,10 +207,6 @@ static int parse_flag(const char* s_flag, unsigned *flag) int main (int argc, const char *argv[]) { - H5E_auto2_t func; - H5E_auto2_t tools_func; - void *edata; - void *tools_edata; hid_t fid_src = H5I_INVALID_HID; hid_t fid_dst = H5I_INVALID_HID; unsigned flag = 0; @@ -226,17 +222,9 @@ main (int argc, const char *argv[]) h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); - /* Disable tools error reporting */ - H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); - H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); - /* init linkinfo struct */ HDmemset(&linkinfo, 0, sizeof(h5tool_link_info_t)); @@ -330,10 +318,8 @@ main (int argc, const char *argv[]) leave(EXIT_FAILURE); } - if (enable_error_stack > 0) { - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - } + /* enable error reporting if command line option */ + h5tools_error_report(); /*------------------------------------------------------------------------- * open output file diff --git a/tools/src/h5diff/h5diff_common.c b/tools/src/h5diff/h5diff_common.c index e0e6f8c..a02ad5a 100644 --- a/tools/src/h5diff/h5diff_common.c +++ b/tools/src/h5diff/h5diff_common.c @@ -25,7 +25,7 @@ static int check_d_input(const char*); * Command-line options: The user can specify short or long-named * parameters. */ -static const char *s_opts = "hVrv:qn:d:p:NcelxE:S"; +static const char *s_opts = "hVrv:qn:d:p:NcelxE:A:S"; static struct long_options l_opts[] = { { "help", no_arg, 'h' }, { "version", no_arg, 'V' }, @@ -41,6 +41,7 @@ static struct long_options l_opts[] = { { "follow-symlinks", no_arg, 'l' }, { "no-dangling-links", no_arg, 'x' }, { "exclude-path", require_arg, 'E' }, + { "exclude-attribute", require_arg, 'A' }, { "enable-error-stack", no_arg, 'S' }, { "vol-value-1", require_arg, '1' }, { "vol-name-1", require_arg, '2' }, @@ -55,7 +56,6 @@ static struct long_options l_opts[] = { * Function: check_options * * Purpose: parse command line input - * *------------------------------------------------------------------------- */ static void check_options(diff_opt_t* opts) @@ -67,7 +67,7 @@ static void check_options(diff_opt_t* opts) /* check between -d , -p, --use-system-epsilon. * These options are mutually exclusive. */ - if ((opts->d + opts->p + opts->use_system_epsilon) > 1) { + if ((opts->delta_bool + opts->percent_bool + opts->use_system_epsilon) > 1) { HDprintf("%s error: -d, -p and --use-system-epsilon options are mutually-exclusive;\n", PROGRAMNAME); HDprintf("use no more than one.\n"); HDprintf("Try '-h' or '--help' option for more information or see the %s entry in the 'HDF5 Reference Manual'.\n", PROGRAMNAME); @@ -75,27 +75,138 @@ static void check_options(diff_opt_t* opts) } } +/*------------------------------------------------------------------------- + * Function: parse_hsize_list + * + * Purpose: Parse a list of comma or space separated integers and return + * them in a list. The string being passed into this function + * should be at the start of the list you want to parse. You are + * responsible for freeing the array returned from here. + * + * Lists in the so-called "terse" syntax are separated by + * semicolons (;). The lists themselves can be separated by + * either commas (,) or white spaces. + * + * Return: <none> + *------------------------------------------------------------------------- + */ +static void +parse_hsize_list(const char *h_list, subset_d *d) +{ + hsize_t *p_list; + const char *ptr; + unsigned int size_count = 0; + unsigned int i = 0; + unsigned int last_digit = 0; + + if (!h_list || !*h_list || *h_list == ';') + return; + + H5TOOLS_START_DEBUG(" - h_list:%s", h_list); + /* count how many integers do we have */ + for (ptr = h_list; ptr && *ptr && *ptr != ';' && *ptr != ']'; ptr++) + if (HDisdigit(*ptr)) { + if (!last_digit) + /* the last read character wasn't a digit */ + size_count++; + + last_digit = 1; + } + else + last_digit = 0; + + if (size_count == 0) { + /* there aren't any integers to read */ + H5TOOLS_ENDDEBUG("No integers to read"); + return; + } + H5TOOLS_DEBUG("Number integers to read=%ld", size_count); + + /* allocate an array for the integers in the list */ + if((p_list = (hsize_t *)HDcalloc(size_count, sizeof(hsize_t))) == NULL) + H5TOOLS_INFO("Unable to allocate space for subset data"); + + for (ptr = h_list; i < size_count && ptr && *ptr && *ptr != ';' && *ptr != ']'; ptr++) + if(HDisdigit(*ptr)) { + /* we should have an integer now */ + p_list[i++] = (hsize_t)HDstrtoull(ptr, NULL, 0); + + while (HDisdigit(*ptr)) + /* scroll to end of integer */ + ptr++; + } + d->data = p_list; + d->len = size_count; + H5TOOLS_ENDDEBUG(""); +} + +/*------------------------------------------------------------------------- + * Function: parse_subset_params + * + * Purpose: Parse the so-called "terse" syntax for specifying subsetting parameters. + * + * Return: Success: struct subset_t object + * Failure: NULL + *------------------------------------------------------------------------- + */ +static struct subset_t * +parse_subset_params(const char *dset) +{ + struct subset_t *s = NULL; + char *brace; + + H5TOOLS_START_DEBUG(" - dset:%s", dset); + if ((brace = HDstrrchr(dset, '[')) != NULL) { + *brace++ = '\0'; + + s = (struct subset_t *)HDcalloc(1, sizeof(struct subset_t)); + parse_hsize_list(brace, &s->start); + + while (*brace && *brace != ';') + brace++; + + if (*brace) + brace++; + + parse_hsize_list(brace, &s->stride); + + while (*brace && *brace != ';') + brace++; + + if (*brace) + brace++; + + parse_hsize_list(brace, &s->count); + + while (*brace && *brace != ';') + brace++; + + if (*brace) + brace++; + + parse_hsize_list(brace, &s->block); + } + H5TOOLS_ENDDEBUG(""); + + return s; +} + /*------------------------------------------------------------------------- * Function: parse_command_line * * Purpose: parse command line input - * *------------------------------------------------------------------------- */ -void parse_command_line(int argc, - const char* argv[], - const char** fname1, - const char** fname2, - const char** objname1, - const char** objname2, - diff_opt_t* opts) +void parse_command_line(int argc, const char* argv[], const char** fname1, const char** fname2, const char** objname1, const char** objname2, diff_opt_t* opts) { int i; int opt; struct exclude_path_list *exclude_head, *exclude_prev, *exclude_node; + struct exclude_path_list *exclude_attr_head, *exclude_attr_prev, *exclude_attr_node; + H5TOOLS_START_DEBUG(""); /* process the command-line */ HDmemset(opts, 0, sizeof (diff_opt_t)); @@ -106,15 +217,18 @@ void parse_command_line(int argc, opts->do_nans = 1; /* not Listing objects that are not comparable */ - opts->m_list_not_cmp = 0; + opts->mode_list_not_cmp = 0; /* initially no not-comparable. */ /**this is bad in mixing option with results**/ - opts->not_cmp=0; + opts->not_cmp = 0; /* init for exclude-path option */ exclude_head = NULL; + /* init for exclude-attribute option */ + exclude_attr_head = NULL; + /* parse command line options */ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { switch ((char)opt) { @@ -134,7 +248,7 @@ void parse_command_line(int argc, break; case 'v': - opts->m_verbose = 1; + opts->mode_verbose = 1; /* This for loop is for handling style like * -v, -v1, --verbose, --verbose=1. */ @@ -144,11 +258,11 @@ void parse_command_line(int argc, */ if (!strcmp (argv[i], "-v")) { /* no arg */ opt_ind--; - opts->m_verbose_level = 0; + opts->mode_verbose_level = 0; break; } else if (!strncmp (argv[i], "-v", (size_t)2)) { - opts->m_verbose_level = atoi(&argv[i][2]); + opts->mode_verbose_level = atoi(&argv[i][2]); break; } @@ -156,11 +270,11 @@ void parse_command_line(int argc, * long opt */ if (!strcmp (argv[i], "--verbose")) { /* no arg */ - opts->m_verbose_level = 0; + opts->mode_verbose_level = 0; break; } - else if ( !strncmp (argv[i], "--verbose", (size_t)9) && argv[i][9]=='=') { - opts->m_verbose_level = atoi(&argv[i][10]); + else if (!strncmp (argv[i], "--verbose", (size_t)9) && argv[i][9]=='=') { + opts->mode_verbose_level = atoi(&argv[i][10]); break; } } @@ -168,11 +282,11 @@ void parse_command_line(int argc, case 'q': /* use quiet mode; supress the message "0 differences found" */ - opts->m_quiet = 1; + opts->mode_quiet = 1; break; case 'r': - opts->m_report = 1; + opts->mode_report = 1; break; case 'l': @@ -214,23 +328,47 @@ void parse_command_line(int argc, } break; + case 'A': + opts->exclude_attr_path = 1; + + /* create linked list of excluding objects */ + if( (exclude_attr_node = (struct exclude_path_list*) HDmalloc(sizeof(struct exclude_path_list))) == NULL) { + HDprintf("Error: lack of memory!\n"); + h5diff_exit(EXIT_FAILURE); + } + + /* init */ + exclude_attr_node->obj_path = opt_arg; + exclude_attr_node->obj_type = H5TRAV_TYPE_UNKNOWN; + exclude_attr_prev = exclude_attr_head; + + if (NULL == exclude_attr_head) { + exclude_attr_head = exclude_attr_node; + exclude_attr_head->next = NULL; + } + else { + while(NULL != exclude_attr_prev->next) + exclude_attr_prev = exclude_attr_prev->next; + + exclude_attr_node->next = NULL; + exclude_attr_prev->next = exclude_attr_node; + } + break; + case 'd': - opts->d = 1; + opts->delta_bool = 1; - if (check_d_input(opt_arg) == - 1) { + if (check_d_input(opt_arg) == -1) { HDprintf("<-d %s> is not a valid option\n", opt_arg); usage(); h5diff_exit(EXIT_FAILURE); } opts->delta = HDatof(opt_arg); - - /* -d 0 is the same as default */ - if (H5_DBL_ABS_EQUAL(opts->delta, (double)0.0F)) - opts->d=0; + /* do not check against default, the DBL_EPSILON is being replaced by user */ break; case 'p': - opts->p = 1; + opts->percent_bool = 1; if (check_p_input(opt_arg) == -1) { HDprintf("<-p %s> is not a valid option\n", opt_arg); usage(); @@ -240,12 +378,12 @@ void parse_command_line(int argc, /* -p 0 is the same as default */ if (H5_DBL_ABS_EQUAL(opts->percent, (double)0.0F)) - opts->p = 0; + opts->percent_bool = 0; break; case 'n': - opts->n = 1; - if ( check_n_input(opt_arg) == -1) { + opts->count_bool = 1; + if (check_n_input(opt_arg) == -1) { HDprintf("<-n %s> is not a valid option\n", opt_arg); usage(); h5diff_exit(EXIT_FAILURE); @@ -258,7 +396,7 @@ void parse_command_line(int argc, break; case 'c': - opts->m_list_not_cmp = 1; + opts->mode_list_not_cmp = 1; break; case 'e': @@ -266,35 +404,35 @@ void parse_command_line(int argc, break; case '1': - opts->vol_info_1.type = VOL_BY_VALUE; - opts->vol_info_1.u.value = (H5VL_class_value_t)HDatoi(opt_arg); - opts->custom_vol_1 = TRUE; + opts->vol_info[0].type = VOL_BY_VALUE; + opts->vol_info[0].u.value = (H5VL_class_value_t)HDatoi(opt_arg); + opts->custom_vol[0] = TRUE; break; case '2': - opts->vol_info_1.type = VOL_BY_NAME; - opts->vol_info_1.u.name = opt_arg; - opts->custom_vol_1 = TRUE; + opts->vol_info[0].type = VOL_BY_NAME; + opts->vol_info[0].u.name = opt_arg; + opts->custom_vol[0] = TRUE; break; case '3': - opts->vol_info_1.info_string = opt_arg; + opts->vol_info[0].info_string = opt_arg; break; case '4': - opts->vol_info_2.type = VOL_BY_VALUE; - opts->vol_info_2.u.value = (H5VL_class_value_t)HDatoi(opt_arg); - opts->custom_vol_2 = TRUE; + opts->vol_info[1].type = VOL_BY_VALUE; + opts->vol_info[1].u.value = (H5VL_class_value_t)HDatoi(opt_arg); + opts->custom_vol[1] = TRUE; break; case '5': - opts->vol_info_2.type = VOL_BY_NAME; - opts->vol_info_2.u.name = opt_arg; - opts->custom_vol_2 = TRUE; + opts->vol_info[1].type = VOL_BY_NAME; + opts->vol_info[1].u.name = opt_arg; + opts->custom_vol[1] = TRUE; break; case '6': - opts->vol_info_2.info_string = opt_arg; + opts->vol_info[1].info_string = opt_arg; break; } } @@ -306,30 +444,46 @@ void parse_command_line(int argc, if (opts->exclude_path) opts->exclude = exclude_head; + /* if exclude-attribute option is used, keep the exclude attr list */ + if (opts->exclude_attr_path) + opts->exclude_attr = exclude_attr_head; + /* check for file names to be processed */ - if (argc <= opt_ind || argv[ opt_ind + 1 ] == NULL) { + if (argc <= opt_ind || argv[opt_ind + 1] == NULL) { error_msg("missing file names\n"); usage(); h5diff_exit(EXIT_FAILURE); } - *fname1 = argv[ opt_ind ]; - *fname2 = argv[ opt_ind + 1 ]; - *objname1 = argv[ opt_ind + 2 ]; + *fname1 = argv[opt_ind]; + *fname2 = argv[opt_ind + 1]; + *objname1 = argv[opt_ind + 2]; + H5TOOLS_DEBUG("file1 = %s", *fname1); + H5TOOLS_DEBUG("file2 = %s", *fname2); if (*objname1 == NULL) { *objname2 = NULL; + H5TOOLS_ENDDEBUG("No obj names"); return; } + H5TOOLS_DEBUG("objname1 = %s", *objname1); - if (argv[ opt_ind + 3 ] != NULL) { - *objname2 = argv[ opt_ind + 3 ]; + if (argv[opt_ind + 3] != NULL) { + *objname2 = argv[opt_ind + 3]; } else { *objname2 = *objname1; } + H5TOOLS_DEBUG("objname2 = %s", *objname2); + /* + * TRILABS-227 is complete except for an issue with printing indices + * the following calls will enable subsetting + opts->sset[0] = parse_subset_params(*objname1); + opts->sset[1] = parse_subset_params(*objname2); + */ + H5TOOLS_ENDDEBUG(""); } @@ -337,26 +491,25 @@ void parse_command_line(int argc, * Function: print_info * * Purpose: print several information messages after h5diff call - * *------------------------------------------------------------------------- */ void print_info(diff_opt_t* opts) { - if (opts->m_quiet || opts->err_stat) + if (opts->mode_quiet || opts->err_stat) return; if (opts->cmn_objs == 0) { HDprintf("No common objects found. Files are not comparable.\n"); - if (!opts->m_verbose) + if (!opts->mode_verbose) HDprintf("Use -v for a list of objects.\n"); } if (opts->not_cmp == 1) { - if (opts->m_list_not_cmp == 0) { + if (opts->mode_list_not_cmp == 0) { HDprintf("--------------------------------\n"); HDprintf("Some objects are not comparable\n"); HDprintf("--------------------------------\n"); - if (opts->m_verbose) + if (opts->mode_verbose) HDprintf("Use -c for a list of objects without details of differences.\n"); else HDprintf("Use -c for a list of objects.\n"); @@ -370,19 +523,10 @@ void print_info(diff_opt_t* opts) * Purpose: check for valid input * * Return: 1 for ok, -1 for fail - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: May 9, 2003 - * - * Comments: - * - * Modifications: - * *------------------------------------------------------------------------- */ H5_ATTR_PURE static int -check_n_input( const char *str ) +check_n_input(const char *str) { unsigned i; char c; @@ -406,24 +550,17 @@ check_n_input( const char *str ) * Purpose: check for a valid p option input * * Return: 1 for ok, -1 for fail - * - * Date: May 9, 2003 - * - * Comments: - * - * Modifications: - * *------------------------------------------------------------------------- */ static int -check_p_input( const char *str ) +check_p_input(const char *str) { double x; /* - the atof return value on a hexadecimal input is different - on some systems; we do a character check for this - */ + * the atof return value on a hexadecimal input is different + * on some systems; we do a character check for this + */ if (HDstrlen(str) > 2 && str[0] == '0' && str[1] == 'x') return -1; @@ -440,24 +577,17 @@ check_p_input( const char *str ) * Purpose: check for a valid d option input * * Return: 1 for ok, -1 for fail - * - * Date: November 11, 2007 - * - * Comments: - * - * Modifications: - * *------------------------------------------------------------------------- */ static int -check_d_input( const char *str ) +check_d_input(const char *str) { double x; /* - the atof return value on a hexadecimal input is different - on some systems; we do a character check for this - */ + * the atof return value on a hexadecimal input is different + * on some systems; we do a character check for this + */ if (HDstrlen(str) > 2 && str[0] == '0' && str[1] == 'x') return -1; @@ -474,7 +604,6 @@ check_d_input( const char *str ) * Purpose: print a usage message * * Return: void - * *------------------------------------------------------------------------- */ @@ -499,10 +628,9 @@ void usage(void) PRINTVALSTREAM(rawoutstream, " Verbose mode with level. Print differences and list of objects.\n"); PRINTVALSTREAM(rawoutstream, " Level of detail depends on value of N:\n"); PRINTVALSTREAM(rawoutstream, " 0 : Identical to '-v' or '--verbose'.\n"); - PRINTVALSTREAM(rawoutstream, " 1 : All level 0 information plus one-line attribute\n"); - PRINTVALSTREAM(rawoutstream, " status summary.\n"); - PRINTVALSTREAM(rawoutstream, " 2 : All level 1 information plus extended attribute\n"); - PRINTVALSTREAM(rawoutstream, " status report.\n"); + PRINTVALSTREAM(rawoutstream, " 1 : All level 0 information plus one-line attribute status summary.\n"); + PRINTVALSTREAM(rawoutstream, " 2 : All level 1 information plus extended attribute status report.\n"); + PRINTVALSTREAM(rawoutstream, " 3 : All level 2 information plus file names.\n"); PRINTVALSTREAM(rawoutstream, " -q, --quiet\n"); PRINTVALSTREAM(rawoutstream, " Quiet mode. Do not produce output.\n"); PRINTVALSTREAM(rawoutstream, " --enable-error-stack\n"); @@ -591,7 +719,14 @@ void usage(void) PRINTVALSTREAM(rawoutstream, " excluded.\n"); PRINTVALSTREAM(rawoutstream, " This option can be used repeatedly to exclude multiple paths.\n"); PRINTVALSTREAM(rawoutstream, "\n"); - + PRINTVALSTREAM(rawoutstream, " --exclude-attribute \"path/to/object/with/attribute\"\n"); + PRINTVALSTREAM(rawoutstream, " Exclude attributes on the specified path to an object when comparing files or groups.\n"); + PRINTVALSTREAM(rawoutstream, "\n"); + PRINTVALSTREAM(rawoutstream, " If there are multiple paths to an object, only the specified path(s)\n"); + PRINTVALSTREAM(rawoutstream, " will be excluded; the comparison will include any path not explicitly\n"); + PRINTVALSTREAM(rawoutstream, " excluded.\n"); + PRINTVALSTREAM(rawoutstream, " This option can be used repeatedly to exclude multiple paths.\n"); + PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " Modes of output:\n"); PRINTVALSTREAM(rawoutstream, " Default mode: print the number of differences found and where they occured\n"); PRINTVALSTREAM(rawoutstream, " -r Report mode: print the above plus the differences\n"); @@ -622,7 +757,22 @@ void usage(void) PRINTVALSTREAM(rawoutstream, " (The option --follow-symlinks overrides the default behavior when\n"); PRINTVALSTREAM(rawoutstream, " symbolic links are compared.).\n"); PRINTVALSTREAM(rawoutstream, "\n"); - + /* + * TRILABS-227 is complete except for an issue with printing indices + * the following will be needed for subsetting + PRINTVALSTREAM(rawoutstream, " Subsetting options:\n"); + PRINTVALSTREAM(rawoutstream, " Subsetting is available by using the fcompact form of subsetting, as follows:\n"); + PRINTVALSTREAM(rawoutstream, " obj1 /foo/mydataset[START;STRIDE;COUNT;BLOCK]\n"); + PRINTVALSTREAM(rawoutstream, " It is not required to use all parameters, but until the last parameter value used,\n"); + PRINTVALSTREAM(rawoutstream, " all of the semicolons (;) are required, even when a parameter value is not specified. Example:\n"); + PRINTVALSTREAM(rawoutstream, " obj1 /foo/mydataset[START;;COUNT;BLOCK]\n"); + PRINTVALSTREAM(rawoutstream, " obj1 /foo/mydataset[START]\n"); + PRINTVALSTREAM(rawoutstream, " The STRIDE, COUNT, and BLOCK parameters are optional and will default to 1 in\n"); + PRINTVALSTREAM(rawoutstream, " each dimension. START is optional and will default to 0 in each dimension.\n"); + PRINTVALSTREAM(rawoutstream, " Each of START, STRIDE, COUNT, and BLOCK must be a comma-separated list of integers with\n"); + PRINTVALSTREAM(rawoutstream, " one integer for each dimension of the dataset.\n"); + PRINTVALSTREAM(rawoutstream, "\n"); +*/ PRINTVALSTREAM(rawoutstream, " Exit code:\n"); PRINTVALSTREAM(rawoutstream, " 0 if no differences, 1 if differences found, 2 if error\n"); PRINTVALSTREAM(rawoutstream, "\n"); diff --git a/tools/src/h5diff/h5diff_main.c b/tools/src/h5diff/h5diff_main.c index c5a0cbf..33d6570 100644 --- a/tools/src/h5diff/h5diff_main.c +++ b/tools/src/h5diff/h5diff_main.c @@ -69,10 +69,7 @@ int main(int argc, const char *argv[]) { int ret; - H5E_auto2_t func; - H5E_auto2_t tools_func; - void *edata; - void *tools_edata; + int i; const char *fname1 = NULL; const char *fname2 = NULL; const char *objname1 = NULL; @@ -83,27 +80,17 @@ int main(int argc, const char *argv[]) h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); - /* Disable tools error reporting */ - H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); - H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); - /*------------------------------------------------------------------------- * process the command-line *------------------------------------------------------------------------- */ parse_command_line(argc, argv, &fname1, &fname2, &objname1, &objname2, &opts); - if (enable_error_stack > 0) { - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - } + /* enable error reporting if command line option */ + h5tools_error_report(); /*------------------------------------------------------------------------- * do the diff @@ -130,6 +117,23 @@ int main(int argc, const char *argv[]) if (opts.err_stat) ret = 2; + /* free any buffers */ + for (i = 0; i < 2; i++) { + if (opts.sset[i]) { + if(opts.sset[i]->start.data) + HDfree(opts.sset[i]->start.data); + if(opts.sset[i]->stride.data) + HDfree(opts.sset[i]->stride.data); + if(opts.sset[i]->count.data) + HDfree(opts.sset[i]->count.data); + if(opts.sset[i]->block.data) + HDfree(opts.sset[i]->block.data); + + HDfree(opts.sset[i]); + opts.sset[i]=NULL; + } + } + h5diff_exit(ret); } diff --git a/tools/src/h5dump/h5dump.c b/tools/src/h5dump/h5dump.c index dfaff17..2b21b1c 100644 --- a/tools/src/h5dump/h5dump.c +++ b/tools/src/h5dump/h5dump.c @@ -655,12 +655,12 @@ parse_hsize_list(const char *h_list, subset_d *d) *------------------------------------------------------------------------- */ static struct subset_t * -parse_subset_params(char *dset) +parse_subset_params(const char *dset) { struct subset_t *s = NULL; char *brace; - if (!disable_compact_subset && ((brace = HDstrrchr(dset, '[')) != NULL)) { + if (!dump_opts.disable_compact_subset && ((brace = HDstrrchr(dset, '[')) != NULL)) { *brace++ = '\0'; s = (struct subset_t *)HDcalloc(1, sizeof(struct subset_t)); @@ -891,50 +891,50 @@ parse_command_line(int argc, const char *argv[]) parse_start: switch ((char)opt) { case 'R': - display_region = TRUE; + dump_opts.display_region = TRUE; region_output = TRUE; break; case 'B': - display_bb = TRUE; + dump_opts.display_bb = TRUE; last_was_dset = FALSE; break; case 'n': - display_fi = TRUE; + dump_opts.display_fi = TRUE; last_was_dset = FALSE; if (opt_arg != NULL) h5trav_set_verbose(HDatoi(opt_arg)); break; case 'p': - display_dcpl = TRUE; + dump_opts.display_dcpl = TRUE; break; case 'y': - display_ai = FALSE; + dump_opts.display_ai = FALSE; break; case 'e': - display_escape = TRUE; + dump_opts.display_escape = TRUE; break; case 'H': - display_data = FALSE; - display_attr_data = FALSE; + dump_opts.display_data = FALSE; + dump_opts.display_attr_data = FALSE; last_was_dset = FALSE; break; case 'A': if (opt_arg != NULL) { if(0 == HDatoi(opt_arg)) - include_attrs = FALSE; + dump_opts.include_attrs = FALSE; } else { - display_data = FALSE; - display_attr_data = TRUE; + dump_opts.display_data = FALSE; + dump_opts.display_attr_data = TRUE; last_was_dset = FALSE; } break; case 'i': - display_oid = TRUE; + dump_opts.display_oid = TRUE; last_was_dset = FALSE; break; case 'r': - display_char = TRUE; + dump_opts.display_char = TRUE; break; case 'V': print_version(h5tools_getprogname()); @@ -955,7 +955,7 @@ parse_start: } break; case 'N': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -967,7 +967,7 @@ parse_start: last_was_dset = FALSE; break; case 'a': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -979,7 +979,7 @@ parse_start: last_was_dset = FALSE; break; case 'd': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -996,7 +996,7 @@ parse_start: driver_name_g = opt_arg; break; case 'g': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -1008,7 +1008,7 @@ parse_start: last_was_dset = FALSE; break; case 'l': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -1020,7 +1020,7 @@ parse_start: last_was_dset = FALSE; break; case 't': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -1047,13 +1047,13 @@ parse_start: } } else { - if(display_attr_data && !display_data) { + if(dump_opts.display_attr_data && !dump_opts.display_data) { if (h5tools_set_attr_output_file(opt_arg, 0) < 0) { usage(h5tools_getprogname()); goto error; } } - if(display_data || display_all) { + if(dump_opts.display_data || dump_opts.display_all) { if (h5tools_set_data_output_file(opt_arg, 0) < 0) { usage(h5tools_getprogname()); goto error; @@ -1061,7 +1061,7 @@ parse_start: } } - usingdasho = TRUE; + dump_opts.usingdasho = TRUE; last_was_dset = FALSE; outfname_g = opt_arg; break; @@ -1111,14 +1111,14 @@ parse_start: usage(h5tools_getprogname()); goto error; } - display_packed_bits = TRUE; + dump_opts.display_packed_bits = TRUE; break; case 'v': - display_vds_first = TRUE; + dump_opts.display_vds_first = TRUE; break; case 'G': - vds_gap_size = HDatoi(opt_arg); - if (vds_gap_size < 0) { + dump_opts.vds_gap_size = HDatoi(opt_arg); + if (dump_opts.vds_gap_size < 0) { usage(h5tools_getprogname()); goto error; } @@ -1255,7 +1255,7 @@ end_collect: enable_error_stack = 1; break; case 'C': - disable_compact_subset = TRUE; + dump_opts.disable_compact_subset = TRUE; break; case 'h': usage(h5tools_getprogname()); @@ -1357,14 +1357,10 @@ main(int argc, const char *argv[]) hid_t fid = H5I_INVALID_HID; hid_t gid = H5I_INVALID_HID; hid_t fapl_id = H5P_DEFAULT; - H5E_auto2_t func; - H5E_auto2_t tools_func; H5O_info2_t oi; struct handler_t *hand = NULL; int i; unsigned u; - void *edata; - void *tools_edata; char *fname = NULL; h5tools_setprogname(PROGRAMNAME); @@ -1373,17 +1369,9 @@ main(int argc, const char *argv[]) dump_function_table = &ddl_function_table; dump_indent = 0; - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); - /* Disable tools error reporting */ - H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); - H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); - if((hand = parse_command_line(argc, argv))==NULL) { goto done; } @@ -1394,34 +1382,29 @@ main(int argc, const char *argv[]) goto done; } - if (enable_error_stack > 0) { - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - } - /* Check for conflicting options */ if (doxml_g) { - if (!display_all) { + if (!dump_opts.display_all) { error_msg("option \"%s\" not available for XML\n", "to display selected objects"); h5tools_setstatus(EXIT_FAILURE); goto done; } - else if (display_bb) { + else if (dump_opts.display_bb) { error_msg("option \"%s\" not available for XML\n", "--boot-block"); h5tools_setstatus(EXIT_FAILURE); goto done; } - else if (display_oid == 1) { + else if (dump_opts.display_oid == 1) { error_msg("option \"%s\" not available for XML\n", "--object-ids"); h5tools_setstatus(EXIT_FAILURE); goto done; } - else if (display_char == TRUE) { + else if (dump_opts.display_char == TRUE) { error_msg("option \"%s\" not available for XML\n", "--string"); h5tools_setstatus(EXIT_FAILURE); goto done; } - else if (usingdasho) { + else if (dump_opts.usingdasho) { error_msg("option \"%s\" not available for XML\n", "--output"); h5tools_setstatus(EXIT_FAILURE); goto done; @@ -1439,6 +1422,10 @@ main(int argc, const char *argv[]) h5tools_setstatus(EXIT_FAILURE); goto done; } + + /* enable error reporting if command line option */ + h5tools_error_report(); + /* Initialize indexing options */ h5trav_set_index(sort_by, sort_order); @@ -1584,7 +1571,7 @@ main(int argc, const char *argv[]) } if (!doxml_g) { - if (display_fi) { + if (dump_opts.display_fi) { PRINTVALSTREAM(rawoutstream, "\n"); dump_fcontents(fid); end_obj(h5tools_dump_header_format->fileend,h5tools_dump_header_format->fileblockend); @@ -1592,11 +1579,11 @@ main(int argc, const char *argv[]) goto done; } - if (display_bb) + if (dump_opts.display_bb) dump_fcpl(fid); } - if(display_all) { + if(dump_opts.display_all) { if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) { error_msg("unable to open root group\n"); h5tools_setstatus(EXIT_FAILURE); @@ -1661,9 +1648,6 @@ main(int argc, const char *argv[]) /* To Do: clean up XML table */ - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - leave(h5tools_getstatus()); done: @@ -1693,9 +1677,6 @@ done: /* To Do: clean up XML table */ - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - leave(h5tools_getstatus()); } /* main */ diff --git a/tools/src/h5dump/h5dump.h b/tools/src/h5dump/h5dump.h index ca1fef6..548af09 100644 --- a/tools/src/h5dump/h5dump.h +++ b/tools/src/h5dump/h5dump.h @@ -52,8 +52,8 @@ typedef struct h5dump_table_list_t { h5dump_table_list_t table_list = {0, 0, NULL}; table_t *group_table = NULL, *dset_table = NULL, *type_table = NULL; -unsigned dump_indent = 0; /*how far in to indent the line */ +unsigned dump_indent = 0; /* how far in to indent the line */ int unamedtype = 0; /* shared datatype with no name */ hbool_t hit_elink = FALSE; /* whether we have traversed an external link */ size_t prefix_len = 1024; @@ -61,23 +61,26 @@ char *prefix = NULL; const char *fp_format = NULL; /* things to display or which are set via command line parameters */ -int display_all = TRUE; -int display_oid = FALSE; -int display_data = TRUE; -int display_attr_data = TRUE; -int display_char = FALSE; /*print 1-byte numbers as ASCII */ -int usingdasho = FALSE; -int display_bb = FALSE; /*superblock */ -int display_dcpl = FALSE; /*dcpl */ -int display_fi = FALSE; /*file index */ -int display_ai = TRUE; /*array index */ -int display_escape = FALSE; /*escape non printable characters */ -int display_region = FALSE; /*print region reference data */ -int disable_compact_subset= FALSE; /* disable compact form of subset notation */ -int display_packed_bits = FALSE; /*print 1-8 byte numbers as packed bits*/ -int include_attrs = TRUE; /* Display attributes */ -int display_vds_first = FALSE; /* vds display to all by default*/ -int vds_gap_size = 0; /* vds skip missing files default is none */ +typedef struct { + int display_all; + int display_oid; + int display_data; + int display_attr_data; + int display_char; /* print 1-byte numbers as ASCII */ + int usingdasho; + int display_bb; /* superblock */ + int display_dcpl; /* dcpl */ + int display_fi; /* file index */ + int display_ai; /* array index */ + int display_escape; /* escape non printable characters */ + int display_region; /* print region reference data */ + int disable_compact_subset; /* disable compact form of subset notation */ + int display_packed_bits; /* print 1-8 byte numbers as packed bits */ + int include_attrs; /* Display attributes */ + int display_vds_first; /* vds display to all by default */ + int vds_gap_size; /* vds skip missing files default is none */ +} dump_opt_t; +dump_opt_t dump_opts = {TRUE, FALSE, TRUE, TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, TRUE, FALSE, FALSE, FALSE, FALSE, TRUE, FALSE, 0}; #define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */ #define PACKED_BITS_SIZE_MAX (8*sizeof(long long)) /* Maximum bits size of integer types of packed-bits */ diff --git a/tools/src/h5dump/h5dump_ddl.c b/tools/src/h5dump/h5dump_ddl.c index 364cdcd..ce3643c 100644 --- a/tools/src/h5dump/h5dump_ddl.c +++ b/tools/src/h5dump/h5dump_ddl.c @@ -103,13 +103,13 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent / COL; ctx.cur_column = dump_indent; - ctx.display_index = display_ai; - ctx.display_char = display_char; + ctx.display_index = dump_opts.display_ai; + ctx.display_char = dump_opts.display_char; attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT); - oid_output = display_oid; - data_output = display_data; - attr_data_output = display_attr_data; + oid_output = dump_opts.display_oid; + data_output = dump_opts.display_data; + attr_data_output = dump_opts.display_attr_data; string_dataformat = *outputformat; @@ -125,7 +125,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; h5dump_type_table = type_table; @@ -185,7 +185,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info2_t *linfo, void H5_ATT else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; /* Build the object's path name */ @@ -242,16 +242,16 @@ dump_all_cb(hid_t group, const char *name, const H5L_info2_t *linfo, void H5_ATT break; case H5O_TYPE_DATASET: - if(display_data) { + if(dump_opts.display_data) { if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) { error_msg("error in creating default access property list ID\n"); } - if (display_vds_first) { + if (dump_opts.display_vds_first) { if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0) error_msg("error in setting access property list ID, virtual_view\n"); } - if (vds_gap_size > 0) { - if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0) + if (dump_opts.vds_gap_size > 0) { + if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)dump_opts.vds_gap_size) < 0) error_msg("error in setting access property list ID, virtual_printf_gap\n"); } } @@ -565,7 +565,7 @@ attr_iteration(hid_t gid, unsigned attr_crt_order_flags) { /* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set in the group for attributes, then, sort by creation order, otherwise by name */ - if(include_attrs) { + if(dump_opts.include_attrs) { if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) { if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) { error_msg("error getting attribute information\n"); @@ -642,7 +642,7 @@ dump_named_datatype(hid_t tid, const char *name) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; if ((tcpl_id = H5Tget_create_plist(tid)) < 0) { @@ -795,7 +795,7 @@ dump_group(hid_t gid, const char *name) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; ctx.need_prefix = TRUE; @@ -831,7 +831,7 @@ dump_group(hid_t gid, const char *name) } } /* end if */ - if(display_oid) + if(dump_opts.display_oid) h5tools_dump_oid(rawoutstream, outputformat, &ctx, gid); h5tools_dump_comment(rawoutstream, outputformat, &ctx, gid); @@ -926,7 +926,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; if ((dcpl_id = H5Dget_create_plist(did)) < 0) { @@ -967,11 +967,11 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) h5tools_dump_dataspace(rawoutstream, outputformat, &ctx, space); H5Sclose(space); - if(display_oid) { + if(dump_opts.display_oid) { h5tools_dump_oid(rawoutstream, outputformat, &ctx, did); } - if(display_dcpl) { + if(dump_opts.display_dcpl) { h5dump_type_table = type_table; h5tools_dump_dcpl(rawoutstream, outputformat, &ctx, dcpl_id, type, did); h5dump_type_table = NULL; @@ -979,16 +979,16 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) H5Pclose(dcpl_id); ctx.sset = sset; - ctx.display_index = display_ai; - ctx.display_char = display_char; - if(display_data) { + ctx.display_index = dump_opts.display_ai; + ctx.display_char = dump_opts.display_char; + if(dump_opts.display_data) { unsigned data_loop = 1; unsigned u; - if(display_packed_bits) + if(dump_opts.display_packed_bits) data_loop = packed_bits_num; for(u = 0; u < data_loop; u++) { - if(display_packed_bits) { + if(dump_opts.display_packed_bits) { ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ @@ -1091,7 +1091,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; HDmemset(&ctx, 0, sizeof(ctx)); @@ -1099,7 +1099,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index) ctx.cur_column = dump_indent; ctx.sset = sset; ctx.display_index = display_index; - ctx.display_char = display_char; + ctx.display_char = dump_opts.display_char; if(obj_data == DATASET_DATA) print_dataset = TRUE; @@ -1527,8 +1527,8 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED *data, int H5 HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent / COL; ctx.cur_column = dump_indent; - ctx.display_index = display_ai; - ctx.display_char = display_char; + ctx.display_index = dump_opts.display_ai; + ctx.display_char = dump_opts.display_char; string_dataformat = *outputformat; @@ -1544,7 +1544,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED *data, int H5 else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; attr_name = h5tools_str_replace(attr + j + 1, "\\/", "/"); @@ -1583,9 +1583,9 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED *data, int H5 } /* end if */ attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT); - oid_output = display_oid; - data_output = display_data; - attr_data_output = display_attr_data; + oid_output = dump_opts.display_oid; + data_output = dump_opts.display_data; + attr_data_output = dump_opts.display_attr_data; h5dump_type_table = type_table; h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id); @@ -1637,16 +1637,16 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis struct subset_t *sset = (struct subset_t *)data; const char *real_name = display_name ? display_name : dset; - if(display_data) { + if(dump_opts.display_data) { if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) { error_msg("error in creating default access property list ID\n"); } - if (display_vds_first) { + if (dump_opts.display_vds_first) { if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0) error_msg("error in setting access property list ID, virtual_view\n"); } - if (vds_gap_size > 0) { - if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0) + if (dump_opts.vds_gap_size > 0) { + if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)dump_opts.vds_gap_size) < 0) error_msg("error in setting access property list ID, virtual_printf_gap\n"); } } diff --git a/tools/src/h5dump/h5dump_extern.h b/tools/src/h5dump/h5dump_extern.h index 00d3bd2..c615621 100644 --- a/tools/src/h5dump/h5dump_extern.h +++ b/tools/src/h5dump/h5dump_extern.h @@ -50,32 +50,35 @@ typedef struct h5dump_table_list_t { extern h5dump_table_list_t table_list; extern table_t *group_table, *dset_table, *type_table; -extern unsigned dump_indent; /*how far in to indent the line */ -extern int unamedtype; /* shared datatype with no name */ -extern hbool_t hit_elink; /* whether we have traversed an external link */ +extern unsigned dump_indent; /* how far in to indent the line */ +extern int unamedtype; /* shared datatype with no name */ +extern hbool_t hit_elink; /* whether we have traversed an external link */ extern size_t prefix_len; extern char *prefix; extern const char *fp_format; /* things to display or which are set via command line parameters */ -extern int display_all; -extern int display_oid; -extern int display_data; -extern int display_attr_data; -extern int display_char; /*print 1-byte numbers as ASCII */ -extern int usingdasho; -extern int display_bb; /*superblock */ -extern int display_dcpl; /*dcpl */ -extern int display_fi; /*file index */ -extern int display_ai; /*array index */ -extern int display_escape; /*escape non printable characters */ -extern int display_region; /*print region reference data */ -extern int disable_compact_subset; /* disable compact form of subset notation */ -extern int display_packed_bits; /*print 1-8 byte numbers as packed bits*/ -extern int include_attrs; /* Display attributes */ -extern int display_vds_first; /* vds display to first missing */ -extern int vds_gap_size; /* vds skip missing files */ +typedef struct { + int display_all; + int display_oid; + int display_data; + int display_attr_data; + int display_char; /* print 1-byte numbers as ASCII */ + int usingdasho; + int display_bb; /* superblock */ + int display_dcpl; /* dcpl */ + int display_fi; /* file index */ + int display_ai; /* array index */ + int display_escape; /* escape non printable characters */ + int display_region; /* print region reference data */ + int disable_compact_subset; /* disable compact form of subset notation */ + int display_packed_bits; /* print 1-8 byte numbers as packed bits */ + int include_attrs; /* Display attributes */ + int display_vds_first; /* vds display to all by default */ + int vds_gap_size; /* vds skip missing files default is none */ +} dump_opt_t; +extern dump_opt_t dump_opts; #define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */ #define PACKED_BITS_SIZE_MAX 8*sizeof(long long) /* Maximum bits size of integer types of packed-bits */ diff --git a/tools/src/h5dump/h5dump_xml.c b/tools/src/h5dump/h5dump_xml.c index 7086388..696841d 100644 --- a/tools/src/h5dump/h5dump_xml.c +++ b/tools/src/h5dump/h5dump_xml.c @@ -162,7 +162,7 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info2_t *linfo, void H5 else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; /* Build the object's path name */ @@ -888,7 +888,7 @@ xml_print_datatype(hid_t type, unsigned in_group) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; if(!in_group && H5Tcommitted(type) > 0) { @@ -1538,7 +1538,7 @@ xml_dump_datatype(hid_t type) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; ctx.indent_level++; @@ -1669,7 +1669,7 @@ xml_dump_dataspace(hid_t space) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; ctx.indent_level++; @@ -1992,7 +1992,7 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; ctx.need_prefix = TRUE; @@ -2014,7 +2014,7 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED ctx.indent_level++; dump_indent += COL; - if (display_attr_data && space_type != H5S_NULL) { + if (dump_opts.display_attr_data && space_type != H5S_NULL) { switch (H5Tget_class(type)) { case H5T_INTEGER: case H5T_FLOAT: @@ -2293,7 +2293,7 @@ xml_dump_named_datatype(hid_t type, const char *name) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; dtxid = (char *)HDmalloc((size_t)100); @@ -2506,7 +2506,7 @@ xml_dump_group(hid_t gid, const char *name) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; if(HDstrcmp(name, "/") == 0) { @@ -2889,7 +2889,7 @@ xml_print_refs(hid_t did, int source) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; for (i = 0; i < (hsize_t)ssiz; i++) { @@ -3039,7 +3039,7 @@ xml_print_strs(hid_t did, int source) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; for (i = 0; i < (hsize_t)ssiz; i++) { @@ -3151,7 +3151,7 @@ check_filters(hid_t dcpl) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; nfilt = H5Pget_nfilters(dcpl); @@ -3287,7 +3287,7 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; ctx.indent_level++; @@ -3627,7 +3627,7 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED *ss else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; xml_name_to_XID(did, tmp, rstr, 100, 1); @@ -3916,7 +3916,7 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED *ss dump_indent -= COL; tempi = H5Dget_storage_size(did); - if (display_data && (tempi > 0)) { + if (dump_opts.display_data && (tempi > 0)) { switch (H5Tget_class(type)) { case H5T_INTEGER: case H5T_FLOAT: @@ -4172,7 +4172,7 @@ xml_print_enum(hid_t type) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; nmembs = (unsigned)H5Tget_nmembers(type); diff --git a/tools/src/h5format_convert/h5format_convert.c b/tools/src/h5format_convert/h5format_convert.c index 2c4cf41..d63f36f 100644 --- a/tools/src/h5format_convert/h5format_convert.c +++ b/tools/src/h5format_convert/h5format_convert.c @@ -64,7 +64,7 @@ static struct long_options l_opts[] = { { NULL, 0, '\0' } }; - + /*------------------------------------------------------------------------- * Function: usage * @@ -109,7 +109,7 @@ static void usage(const char *prog) * Purpose: parse command line input * * Return: Success: 0 - * Failure: 1 + * Failure: 1 * *------------------------------------------------------------------------- */ @@ -127,47 +127,47 @@ parse_command_line(int argc, const char **argv) /* parse command line options */ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { - switch((char) opt) { - case 'h': - usage(h5tools_getprogname()); - h5tools_setstatus(EXIT_SUCCESS); - goto error; - - case 'V': - print_version(h5tools_getprogname()); - h5tools_setstatus(EXIT_SUCCESS); - goto error; - - case 'v': - verbose_g = TRUE; - break; - - case 'd': /* -d dname */ - if(opt_arg != NULL && *opt_arg) - dname_g = HDstrdup(opt_arg); - if(dname_g == NULL) { - h5tools_setstatus(EXIT_FAILURE); - error_msg("No dataset name\n", opt_arg); - usage(h5tools_getprogname()); - goto error; - } - dset_g = TRUE; - break; - - case 'n': /* -n */ - noop_g = TRUE; - break; - - case 'E': - enable_error_stack = 1; - break; - - default: - h5tools_setstatus(EXIT_FAILURE); - usage(h5tools_getprogname()); - goto error; - break; - } /* switch */ + switch((char) opt) { + case 'h': + usage(h5tools_getprogname()); + h5tools_setstatus(EXIT_SUCCESS); + goto error; + + case 'V': + print_version(h5tools_getprogname()); + h5tools_setstatus(EXIT_SUCCESS); + goto error; + + case 'v': + verbose_g = TRUE; + break; + + case 'd': /* -d dname */ + if(opt_arg != NULL && *opt_arg) + dname_g = HDstrdup(opt_arg); + if(dname_g == NULL) { + h5tools_setstatus(EXIT_FAILURE); + error_msg("No dataset name\n", opt_arg); + usage(h5tools_getprogname()); + goto error; + } + dset_g = TRUE; + break; + + case 'n': /* -n */ + noop_g = TRUE; + break; + + case 'E': + enable_error_stack = 1; + break; + + default: + h5tools_setstatus(EXIT_FAILURE); + usage(h5tools_getprogname()); + goto error; + break; + } /* switch */ } /* while */ if (argc <= opt_ind) { @@ -185,7 +185,7 @@ error: return(-1); ; } /* parse_command_line() */ - + /*------------------------------------------------------------------------- * Function: leave * @@ -207,17 +207,17 @@ leave(int ret) * Function: convert() * * Purpose: To downgrade a dataset's indexing type or layout version: - * For chunked: - * Downgrade the chunk indexing type to version 1 B-tree - * If type is already version 1 B-tree, no further action - * For compact/contiguous: - * Downgrade the layout version from 4 to 3 - * If version is already <= 3, no further action - * For virtual: - * No further action + * For chunked: + * Downgrade the chunk indexing type to version 1 B-tree + * If type is already version 1 B-tree, no further action + * For compact/contiguous: + * Downgrade the layout version from 4 to 3 + * If version is already <= 3, no further action + * For virtual: + * No further action * * Return: Success: 0 - * Failure: 1 + * Failure: 1 * *------------------------------------------------------------------------- */ @@ -312,7 +312,7 @@ convert(hid_t fid, const char *dname) } if(verbose_g) - HDfprintf(stdout, "Converting the dataset...\n"); + HDfprintf(stdout, "Converting the dataset...\n"); /* Downgrade the dataset */ if(H5Dformat_convert(did) < 0) { @@ -377,7 +377,7 @@ convert_dsets_cb(const char *path, const H5O_info2_t *oi, const char *already_vi if(verbose_g) HDfprintf(stdout, "Going to process dataset:%s...\n", path); if(convert(fid, path) < 0) - goto error; + goto error; } /* end if */ } /* end if */ @@ -387,62 +387,61 @@ error: return -1; } /* end convert_dsets_cb() */ - + /*------------------------------------------------------------------------- * Function: main * * Purpose: To convert the chunk indexing type of a dataset in a file to - * version 1 B-tree. + * version 1 B-tree. * * Return: Success: 0 - * Failure: 1 + * Failure: 1 * *------------------------------------------------------------------------- */ int main(int argc, const char *argv[]) { - H5E_auto2_t func; - void *edata; hid_t fid = H5I_INVALID_HID; h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); /* Parse command line options */ if(parse_command_line(argc, argv) < 0) - goto done; + goto done; else if(verbose_g) - HDfprintf(stdout, "Process command line options\n"); + HDfprintf(stdout, "Process command line options\n"); if(noop_g && verbose_g) - HDfprintf(stdout, "It is noop...\n"); + HDfprintf(stdout, "It is noop...\n"); + + /* enable error reporting if command line option */ + h5tools_error_report(); /* Open the HDF5 file */ if((fid = h5tools_fopen(fname_g, H5F_ACC_RDWR, H5P_DEFAULT, FALSE, NULL, 0)) < 0) { - error_msg("unable to open file \"%s\"\n", fname_g); - h5tools_setstatus(EXIT_FAILURE); - goto done; - } else if(verbose_g) - HDfprintf(stdout, "Open the file %s\n", fname_g); + error_msg("unable to open file \"%s\"\n", fname_g); + h5tools_setstatus(EXIT_FAILURE); + goto done; + } + else if(verbose_g) + HDfprintf(stdout, "Open the file %s\n", fname_g); if(dset_g) { /* Convert a specified dataset in the file */ - if(verbose_g) - HDfprintf(stdout, "Going to process dataset: %s...\n", dname_g); - if(convert(fid, dname_g) < 0) - goto done; - } else { /* Convert all datasets in the file */ - if(verbose_g) - HDfprintf(stdout, "Processing all datasets in the file...\n"); - if(h5trav_visit(fid, "/", TRUE, TRUE, convert_dsets_cb, NULL, &fid, H5O_INFO_BASIC) < 0) - goto done; + if(verbose_g) + HDfprintf(stdout, "Going to process dataset: %s...\n", dname_g); + if(convert(fid, dname_g) < 0) + goto done; + } + else { /* Convert all datasets in the file */ + if(verbose_g) + HDfprintf(stdout, "Processing all datasets in the file...\n"); + if(h5trav_visit(fid, "/", TRUE, TRUE, convert_dsets_cb, NULL, &fid, H5O_INFO_BASIC) < 0) + goto done; } /* end else */ if(verbose_g) { @@ -464,19 +463,20 @@ main(int argc, const char *argv[]) done: /* Close the file */ if(fid >= 0) { - if(H5Fclose(fid) < 0) { - error_msg("unable to close file \"%s\"\n", fname_g); - h5tools_setstatus(EXIT_FAILURE); - } else if(verbose_g) - HDfprintf(stdout, "Close the file\n"); + if(H5Fclose(fid) < 0) { + error_msg("unable to close file \"%s\"\n", fname_g); + h5tools_setstatus(EXIT_FAILURE); + } + else if(verbose_g) { + HDfprintf(stdout, "Close the file\n"); + } } /* end if */ if(fname_g) - HDfree(fname_g); + HDfree(fname_g); if(dname_g) - HDfree(dname_g); + HDfree(dname_g); - H5Eset_auto2(H5E_DEFAULT, func, edata); leave(h5tools_getstatus()); } /* end main() */ diff --git a/tools/src/h5import/h5import.c b/tools/src/h5import/h5import.c index b11fe7f..4a642e0 100644 --- a/tools/src/h5import/h5import.c +++ b/tools/src/h5import/h5import.c @@ -3735,8 +3735,8 @@ static int getExternalFilename(struct Input *in, FILE *strm) return (-1); } - in->externFilename = (char *) HDmalloc ((size_t) (HDstrlen(temp)) * sizeof(char)); - (void) HDstrcpy(in->externFilename, temp); + in->externFilename = (char *) HDmalloc ((size_t) (HDstrlen(temp) + 1) * sizeof(char)); + (void) HDstrncpy(in->externFilename, temp, HDstrlen(temp) + 1); return (0); } diff --git a/tools/src/h5jam/h5jam.c b/tools/src/h5jam/h5jam.c index 009e527..8b61112 100644 --- a/tools/src/h5jam/h5jam.c +++ b/tools/src/h5jam/h5jam.c @@ -120,13 +120,6 @@ usage (const char *prog) static void leave(int ret) { - if (ub_file) - HDfree (ub_file); - if (input_file) - HDfree (input_file); - if (output_file) - HDfree (output_file); - h5tools_close(); HDexit(ret); @@ -195,8 +188,6 @@ main (int argc, const char *argv[]) int ufid = -1; int h5fid = -1; int ofid = -1; - void *edata; - H5E_auto2_t func; hid_t ifile = H5I_INVALID_HID; hid_t plist = H5I_INVALID_HID; herr_t status; @@ -214,20 +205,20 @@ main (int argc, const char *argv[]) h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); parse_command_line(argc, argv); + /* enable error reporting if command line option */ + h5tools_error_report(); + if (ub_file == NULL) { /* no user block */ error_msg("missing argument for -u <user_file>.\n"); help_ref_msg(stderr); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } testval = H5Fis_accessible(ub_file, H5P_DEFAULT); @@ -235,13 +226,15 @@ main (int argc, const char *argv[]) if (testval > 0) { error_msg("-u <user_file> cannot be HDF5 file, but it appears to be an HDF5 file.\n"); help_ref_msg(stderr); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } if (input_file == NULL) { error_msg("missing argument for -i <HDF5 file>.\n"); help_ref_msg(stderr); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } testval = H5Fis_accessible(input_file, H5P_DEFAULT); @@ -249,45 +242,49 @@ main (int argc, const char *argv[]) if (testval <= 0) { error_msg("Input HDF5 file \"%s\" is not HDF5 format.\n", input_file); help_ref_msg(stderr); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } ifile = H5Fopen(input_file, H5F_ACC_RDONLY, H5P_DEFAULT); if (ifile < 0) { error_msg("Can't open input HDF5 file \"%s\"\n", input_file); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } plist = H5Fget_create_plist(ifile); if (plist < 0) { error_msg("Can't get file creation plist for file \"%s\"\n", input_file); - H5Fclose(ifile); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } status = H5Pget_userblock(plist, &usize); if (status < 0) { error_msg("Can't get user block for file \"%s\"\n", input_file); - H5Pclose(plist); - H5Fclose(ifile); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } H5Pclose(plist); + plist = H5I_INVALID_HID; H5Fclose(ifile); + ifile = H5I_INVALID_HID; ufid = HDopen(ub_file, O_RDONLY); if(ufid < 0) { error_msg("unable to open user block file \"%s\"\n", ub_file); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } res = HDfstat(ufid, &sbuf); if(res < 0) { error_msg("Can't stat file \"%s\"\n", ub_file); - HDclose (ufid); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } fsize = (off_t)sbuf.st_size; @@ -295,16 +292,15 @@ main (int argc, const char *argv[]) h5fid = HDopen(input_file, O_RDONLY); if(h5fid < 0) { error_msg("unable to open HDF5 file for read \"%s\"\n", input_file); - HDclose (ufid); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } res = HDfstat(h5fid, &sbuf2); if(res < 0) { error_msg("Can't stat file \"%s\"\n", input_file); - HDclose (h5fid); - HDclose (ufid); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } h5fsize = (hsize_t)sbuf2.st_size; @@ -314,9 +310,8 @@ main (int argc, const char *argv[]) if (ofid < 0) { error_msg("unable to open output file \"%s\"\n", output_file); - HDclose (h5fid); - HDclose (ufid); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } } else { @@ -324,9 +319,8 @@ main (int argc, const char *argv[]) if (ofid < 0) { error_msg("unable to create output file \"%s\"\n", output_file); - HDclose (h5fid); - HDclose (ufid); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } } @@ -365,12 +359,11 @@ main (int argc, const char *argv[]) /* pad the ub */ if(write_pad(ofid, where, &where) < 0) { error_msg("Can't pad file \"%s\"\n", output_file); - HDclose (h5fid); - HDclose (ufid); - HDclose (ofid); - leave (EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); + goto done; } /* end if */ +done: if(ub_file) HDfree(ub_file); if(input_file) @@ -378,6 +371,11 @@ main (int argc, const char *argv[]) if(output_file) HDfree(output_file); + if(plist >= 0) + H5Pclose(plist); + if(ifile >= 0) + H5Fclose(ifile); + if(ufid >= 0) HDclose(ufid); if(h5fid >= 0) @@ -385,7 +383,7 @@ main (int argc, const char *argv[]) if(ofid >= 0) HDclose(ofid); - return h5tools_getstatus(); + leave(h5tools_getstatus()); } /*------------------------------------------------------------------------- diff --git a/tools/src/h5jam/h5unjam.c b/tools/src/h5jam/h5unjam.c index 203522b..b48e2c1 100644 --- a/tools/src/h5jam/h5unjam.c +++ b/tools/src/h5jam/h5unjam.c @@ -185,6 +185,13 @@ done: return EXIT_FAILURE; } +static void +leave(int ret) +{ + h5tools_close(); + HDexit(ret); +} + /*------------------------------------------------------------------------- * Function: main * @@ -197,8 +204,6 @@ done: int main(int argc, const char *argv[]) { - void *edata; - H5E_auto2_t func; hid_t ifile = H5I_INVALID_HID; hid_t plist = H5I_INVALID_HID; off_t fsize; @@ -211,16 +216,15 @@ main(int argc, const char *argv[]) h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); if(EXIT_FAILURE == parse_command_line(argc, argv)) goto done; + /* enable error reporting if command line option */ + h5tools_error_report(); + if (input_file == NULL) { /* no user block */ error_msg("missing argument for HDF5 file input.\n"); @@ -319,9 +323,7 @@ done: HDfree(ub_file); } - h5tools_close(); - - return h5tools_getstatus(); + leave(h5tools_getstatus()); } /*------------------------------------------------------------------------- diff --git a/tools/src/h5ls/h5ls.c b/tools/src/h5ls/h5ls.c index 08a561e..1b294da 100644 --- a/tools/src/h5ls/h5ls.c +++ b/tools/src/h5ls/h5ls.c @@ -1298,230 +1298,6 @@ print_type(h5tools_str_t *buffer, hid_t type, int ind) h5tools_str_append(buffer,"%lu-byte class-%u unknown", (unsigned long)H5Tget_size(type), (unsigned)data_class); } -/* - * - */ -static void -dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t container, H5R_ref_t *ref_buf, int ndims) -{ - hid_t new_obj_id = H5I_INVALID_HID; - hid_t new_obj_sid = H5I_INVALID_HID; - hsize_t elmt_counter = 0; /*counts the # elements printed. */ - size_t ncols = 80; /* available output width */ - int i; - hsize_t curr_pos = 0; /* total data element position */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t datactx; /* print context */ - - H5TOOLS_START_DEBUG(""); - - datactx = *ctx; /* print context */ - /* Assume entire data space to be printed */ - if (datactx.ndims > 0) - for (i = 0; (unsigned)i < datactx.ndims; i++) - datactx.p_min_idx[i] = 0; - datactx.need_prefix = TRUE; - - HDmemset(&buffer, 0, sizeof(h5tools_str_t)); - for(i = 0; i < ndims; i++, datactx.cur_elmt++, elmt_counter++) { - H5O_type_t obj_type = -1; /* Object type */ - H5R_type_t ref_type; /* Reference type */ - - H5TOOLS_DEBUG("reference loop:%d with curr_pos=%ld", i, curr_pos); - - datactx.need_prefix = TRUE; - h5tools_str_reset(&buffer); - H5TOOLS_DEBUG("reference loop - h5tools_str_sprint with H5T_STD_REF:%d", i); - h5tools_str_sprint(&buffer, info, container, H5T_STD_REF, &ref_buf[i], &datactx); - h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, (hsize_t)ndims); - - ref_type = H5Rget_type((const H5R_ref_t *)&ref_buf[i]); - switch (ref_type) { - case H5R_OBJECT1: - H5TOOLS_DEBUG("ref_type is H5R_OBJECT1"); - if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { - switch (obj_type) { - case H5O_TYPE_DATASET: - if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - datactx.indent_level++; - h5tools_dump_dset(stream, info, &datactx, new_obj_id); - datactx.indent_level--; - if(H5Dclose(new_obj_id) < 0) - H5TOOLS_INFO("H5Dclose H5R_OBJECT1:H5O_TYPE_DATASET failed"); - if(H5Rdestroy(&ref_buf[i]) < 0) - H5TOOLS_INFO("H5Rdestroy H5R_OBJECT1:H5O_TYPE_DATASET failed"); - } - else - H5TOOLS_INFO("H5Ropen_object H5R_OBJECT1:H5O_TYPE_DATASET failed"); - break; - - case H5O_TYPE_GROUP: - case H5O_TYPE_NAMED_DATATYPE: - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - break; - } /* end switch */ - } - else - H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT1 failed"); - break; - case H5R_DATASET_REGION1: - H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1"); - if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - datactx.indent_level++; - h5tools_dump_dset(stream, info, &datactx, new_obj_id); - datactx.indent_level--; - if(H5Dclose(new_obj_id) < 0) - H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION1 failed"); - if(H5Rdestroy(&ref_buf[i]) < 0) - H5TOOLS_INFO("H5Rdestroy H5R_DATASET_REGION1 failed"); - } - else - H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed"); - break; - case H5R_OBJECT2: - H5TOOLS_DEBUG("ref_type is H5R_OBJECT2"); - if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { - switch (obj_type) { - case H5O_TYPE_GROUP: - break; - - case H5O_TYPE_DATASET: - if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - datactx.indent_level++; - h5tools_dump_dset(stream, info, &datactx, new_obj_id); - datactx.indent_level--; - if(H5Oclose(new_obj_id) < 0) - H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed"); - if(H5Rdestroy(&ref_buf[i]) < 0) - H5TOOLS_INFO("H5Rdestroy H5R_OBJECT2 failed"); - } - else - H5TOOLS_INFO("H5Ropen_object H5R_OBJECT2 failed"); - break; - - case H5O_TYPE_NAMED_DATATYPE: - break; - - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - break; - } /* end switch */ - } - else - H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT2 failed"); - break; - case H5R_DATASET_REGION2: - H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2"); - - if (info->line_ncols > 0) - ncols = info->line_ncols; - - /* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */ - if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0) - H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed"); - else { - if((new_obj_sid = H5Ropen_region(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) { - H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2"); - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " {"); - h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - - datactx.need_prefix = TRUE; - datactx.indent_level++; - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "NULL"); - h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - datactx.indent_level--; - datactx.need_prefix = TRUE; - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "}"); - h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - } - else { - H5S_sel_type region_type; - - region_type = H5Sget_select_type(new_obj_sid); - if(region_type == H5S_SEL_POINTS) { - /* Print point information */ - H5TOOLS_DEBUG("H5S_SEL_POINTS H5R_DATASET_REGION2"); - h5tools_dump_region_data_points(new_obj_sid, new_obj_id, stream, info, &datactx, - &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter); - } - else if(region_type == H5S_SEL_HYPERSLABS) { - /* Print block information */ - H5TOOLS_DEBUG("H5S_SEL_HYPERSLABS H5R_DATASET_REGION2"); - h5tools_dump_region_data_blocks(new_obj_sid, new_obj_id, stream, info, &datactx, - &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter); - } - else - H5TOOLS_INFO("invalid region type"); - } /* end else to if (h5tools_is_zero(... */ - if(H5Sclose(new_obj_sid) < 0) - H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed"); - } - else - H5TOOLS_INFO("H5Ropen_region H5R_DATASET_REGION2 failed"); - if(H5Dclose(new_obj_id) < 0) - H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed"); - if(H5Rdestroy(&ref_buf[i]) < 0) - H5TOOLS_INFO("H5Rdestroy H5R_DATASET_REGION2 failed"); - } - break; - case H5R_ATTR: - H5TOOLS_DEBUG("ref_type is H5R_ATTR"); - if((new_obj_id = H5Ropen_attr(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - h5tools_dump_region_attribute(new_obj_id, stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - if(H5Aclose(new_obj_id) < 0) - H5TOOLS_INFO("H5Aclose H5R_ATTR failed"); - if(H5Rdestroy(&ref_buf[i]) < 0) - H5TOOLS_INFO("H5Rdestroy H5R_ATTR failed"); - } - else { - H5TOOLS_DEBUG("NULL H5R_ATTR"); - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, " {"); - h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - - datactx.need_prefix = TRUE; - datactx.indent_level++; - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "NULL"); - h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - datactx.indent_level--; - datactx.need_prefix = TRUE; - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "}"); - h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - - H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed"); - } - break; - case H5R_BADTYPE: - case H5R_MAXTYPE: - default: - break; - } /* end switch */ - - H5TOOLS_DEBUG("finished reference loop:%d",i); - } /* end for(i = 0; i < ndims; i++, ctx->cur_elmt++, elmt_counter++) */ - - h5tools_str_close(&buffer); - - PRINTVALSTREAM(stream, "\n"); - - H5TOOLS_ENDDEBUG(""); -} - /*------------------------------------------------------------------------- * Function: dump_dataset_values * @@ -1537,7 +1313,6 @@ dump_dataset_values(hid_t dset) hid_t space = H5I_INVALID_HID; hsize_t total_size[H5S_MAX_RANK]; int ndims; - size_t i; char string_prefix[64]; static char fmt_double[16]; static char fmt_float[16]; @@ -1653,13 +1428,9 @@ dump_dataset_values(hid_t dset) H5TOOLS_DEBUG("ndims=%d - ctx.ndims=%d", ndims, ctx.ndims); /* Assume entire data space to be printed */ - if (ctx.ndims > 0) - for (i = 0; i < (size_t)ctx.ndims; i++) - ctx.p_min_idx[i] = 0; - H5Sget_simple_extent_dims(space, total_size, NULL); - if (ctx.ndims > 0) - init_acc_pos(&ctx, total_size); + init_acc_pos(ctx.ndims, total_size, ctx.acc, ctx.pos, ctx.p_min_idx); + ctx.need_prefix = TRUE; if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) { @@ -1669,7 +1440,9 @@ dump_dataset_values(hid_t dset) H5TOOLS_INFO("H5Dread reference failed"); H5TOOLS_GOTO_DONE_NO_RET(); } - dump_reference(rawoutstream, info, &ctx, dset, ref_buf, ndims); + h5tools_dump_reference(rawoutstream, info, &ctx, dset, ref_buf, ndims); + + PRINTVALSTREAM(rawoutstream, "\n"); HDfree(ref_buf); } } @@ -1707,7 +1480,6 @@ dump_attribute_values(hid_t attr) hid_t space = H5I_INVALID_HID; hsize_t total_size[H5S_MAX_RANK]; int ndims; - size_t i; char string_prefix[64]; static char fmt_double[16]; static char fmt_float[16]; @@ -1824,13 +1596,9 @@ dump_attribute_values(hid_t attr) H5TOOLS_DEBUG("ndims=%d - ctx.ndims=%d", ndims, ctx.ndims); /* Assume entire data space to be printed */ - if (ctx.ndims > 0) - for (i = 0; i < (size_t)ctx.ndims; i++) - ctx.p_min_idx[i] = 0; - H5Sget_simple_extent_dims(space, total_size, NULL); - if (ctx.ndims > 0) - init_acc_pos(&ctx, total_size); + init_acc_pos(ctx.ndims, total_size, ctx.acc, ctx.pos, ctx.p_min_idx); + ctx.need_prefix = TRUE; if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) { @@ -1841,7 +1609,9 @@ dump_attribute_values(hid_t attr) H5TOOLS_GOTO_DONE_NO_RET(); } ctx.indent_level++; - dump_reference(rawoutstream, info, &ctx, attr, ref_buf, ndims); + h5tools_dump_reference(rawoutstream, info, &ctx, attr, ref_buf, ndims); + + PRINTVALSTREAM(rawoutstream, "\n"); ctx.indent_level--; HDfree(ref_buf); } @@ -2856,10 +2626,6 @@ main(int argc, const char *argv[]) const char *preferred_driver = NULL; int err_exit = 0; hid_t fapl_id = H5P_DEFAULT; - H5E_auto2_t func; - H5E_auto2_t tools_func; - void *edata; - void *tools_edata; hbool_t custom_vol_fapl = FALSE; h5tools_vol_info_t vol_info; @@ -2889,17 +2655,9 @@ main(int argc, const char *argv[]) h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); - /* Disable tools error reporting */ - H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); - H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); - /* Initialize fapl info struct */ HDmemset(&vol_info, 0, sizeof(h5tools_vol_info_t)); @@ -3158,6 +2916,9 @@ main(int argc, const char *argv[]) } } /* end for */ + /* enable error reporting if command line option */ + h5tools_error_report(); + /* If no arguments remain then print a usage message (instead of doing * absolutely nothing ;-) */ if (argno >= argc) { @@ -3208,11 +2969,6 @@ main(int argc, const char *argv[]) } } - if (enable_error_stack > 0) { - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - } - /* Each remaining argument is an hdf5 file followed by an optional slash * and object name. * @@ -3271,7 +3027,6 @@ main(int argc, const char *argv[]) x = oname; if (NULL == (oname = HDstrdup(oname))) { HDfprintf(rawerrorstream, "memory allocation failed\n"); - H5Eset_auto2(H5E_DEFAULT, func, edata); leave(EXIT_FAILURE); } *x = '\0'; @@ -3316,7 +3071,6 @@ main(int argc, const char *argv[]) h5tools_str_reset(&buffer); print_obj_name(&buffer, &iter, oname, "**NOT FOUND**"); h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0); - H5Eset_auto2(H5E_DEFAULT, func, edata); leave(EXIT_FAILURE); } /* end if */ } /* end if */ @@ -3326,7 +3080,6 @@ main(int argc, const char *argv[]) /* Open the object and display it's information */ if (li.type == H5L_TYPE_HARD) { if (visit_obj(file_id, oname, &iter) < 0) { - H5Eset_auto2(H5E_DEFAULT, func, edata); leave(EXIT_FAILURE); } } /* end if(li.type == H5L_TYPE_HARD) */ @@ -3357,12 +3110,10 @@ main(int argc, const char *argv[]) if (fapl_id != H5P_DEFAULT) { if (0 < H5Pclose(fapl_id)) { HDfprintf(rawerrorstream, "Error: Unable to set close fapl entry\n\n"); - H5Eset_auto2(H5E_DEFAULT, func, edata); leave(EXIT_FAILURE); } } - H5Eset_auto2(H5E_DEFAULT, func, edata); if (err_exit) leave(EXIT_FAILURE); else diff --git a/tools/src/h5repack/h5repack_main.c b/tools/src/h5repack/h5repack_main.c index f7822ca..0ad61c0 100644 --- a/tools/src/h5repack/h5repack_main.c +++ b/tools/src/h5repack/h5repack_main.c @@ -804,10 +804,6 @@ done: int main(int argc, const char **argv) { pack_opt_t options; /*the global options */ - H5E_auto2_t func; - H5E_auto2_t tools_func; - void *edata; - void *tools_edata; int parse_ret; HDmemset(&options, 0, sizeof(pack_opt_t)); @@ -818,14 +814,6 @@ int main(int argc, const char **argv) h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - - /* Disable tools error reporting */ - H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); - H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); - /* update hyperslab buffer size from H5TOOLS_BUFSIZE env if exist */ if (h5tools_getenv_update_hyperslab_bufsize() < 0) { HDprintf("Error occurred while retrieving H5TOOLS_BUFSIZE value\n"); @@ -855,10 +843,8 @@ int main(int argc, const char **argv) goto done; } - if (enable_error_stack > 0) { - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - } + /* enable error reporting if command line option */ + h5tools_error_report(); /* pack it */ if (h5repack(infile, outfile, &options) < 0) { diff --git a/tools/src/h5stat/h5stat.c b/tools/src/h5stat/h5stat.c index 82fc731..93b7242 100644 --- a/tools/src/h5stat/h5stat.c +++ b/tools/src/h5stat/h5stat.c @@ -1786,32 +1786,23 @@ main(int argc, const char *argv[]) iter_t iter; const char *fname = NULL; hid_t fid = H5I_INVALID_HID; - H5E_auto2_t func; - H5E_auto2_t tools_func; - void *edata; - void *tools_edata; struct handler_t *hand = NULL; hid_t fapl_id = H5P_DEFAULT; h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); - /* Disable tools error reporting */ - H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); - H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); - HDmemset(&iter, 0, sizeof(iter)); if(parse_command_line(argc, argv, &hand) < 0) goto done; + /* enable error reporting if command line option */ + h5tools_error_report(); + if (drivername) { h5tools_vfd_info_t vfd_info; @@ -1843,11 +1834,6 @@ main(int argc, const char *argv[]) fname = argv[opt_ind]; - if(enable_error_stack > 0) { - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - } - /* Check for filename given */ if(fname) { hid_t fcpl; @@ -1952,8 +1938,6 @@ done: h5tools_setstatus(EXIT_FAILURE); } /* end if */ - H5Eset_auto2(H5E_DEFAULT, func, edata); - leave(h5tools_getstatus()); } /* end main() */ diff --git a/tools/src/misc/h5clear.c b/tools/src/misc/h5clear.c index b81e2b3..3bd570a 100644 --- a/tools/src/misc/h5clear.c +++ b/tools/src/misc/h5clear.c @@ -266,14 +266,9 @@ main (int argc, const char *argv[]) h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable the HDF5 library's error reporting */ - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* initialize h5tools lib */ h5tools_init(); - H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); - /* Parse command line options */ if(parse_command_line(argc, argv) < 0) goto done; @@ -281,6 +276,9 @@ main (int argc, const char *argv[]) if(fname_g == NULL) goto done; + /* enable error reporting if command line option */ + h5tools_error_report(); + /* Print usage/exit if not using at least one of the options */ if(!clear_status_flags && !remove_cache_image && !increment_eoa_eof && !print_filesize) { @@ -387,7 +385,6 @@ main (int argc, const char *argv[]) warn_msg("No cache image in the file\n"); } - h5tools_setstatus(EXIT_SUCCESS); done: diff --git a/tools/src/misc/h5mkgrp.c b/tools/src/misc/h5mkgrp.c index cbd6e6d..4d2d2b8 100644 --- a/tools/src/misc/h5mkgrp.c +++ b/tools/src/misc/h5mkgrp.c @@ -49,7 +49,7 @@ typedef struct mkgrp_opt_t { mkgrp_opt_t params_g; /* Command line parameter settings */ - + /*------------------------------------------------------------------------- * Function: leave * @@ -81,7 +81,7 @@ leave(int ret) HDexit(ret); } /* end leave() */ - + /*------------------------------------------------------------------------- * Function: usage * @@ -113,7 +113,7 @@ usage(const char *prog) PRINTVALSTREAM(rawoutstream, "\n"); } /* end usage() */ - + /*------------------------------------------------------------------------- * Function: parse_command_line * @@ -248,7 +248,7 @@ parse_command_line(int argc, const char *argv[], mkgrp_opt_t *options) return 0; } /* parse_command_line() */ - + /*------------------------------------------------------------------------- * Function: main * @@ -268,9 +268,6 @@ main(int argc, const char *argv[]) h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - /* Disable the HDF5 library's error reporting */ - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); @@ -289,6 +286,9 @@ main(int argc, const char *argv[]) leave(EXIT_FAILURE); } + /* enable error reporting if command line option */ + h5tools_error_report(); + /* Check for creating groups with new format version */ if(params_g.latest) { /* Set the "use the latest version of the format" bounds */ diff --git a/tools/test/h5diff/CMakeTests.cmake b/tools/test/h5diff/CMakeTests.cmake index 3d9c6f5..74e3929 100644 --- a/tools/test/h5diff/CMakeTests.cmake +++ b/tools/test/h5diff/CMakeTests.cmake @@ -66,8 +66,10 @@ ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/non_comparables2.h5 ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/tudfilter.h5 ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/tudfilter2.h5 - ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/diff_strings1.h5 - ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/diff_strings2.h5 + ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_strings1.h5 + ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_strings2.h5 + ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_eps1.h5 + ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_eps2.h5 # tools/testfiles/vds ${HDF5_TOOLS_DIR}/testfiles/vds/1_a.h5 ${HDF5_TOOLS_DIR}/testfiles/vds/1_b.h5 @@ -302,6 +304,7 @@ ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_v2.txt ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_v3.txt ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_vlstr.txt + ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_eps.txt ) set (LIST_WIN_TEST_FILES @@ -539,8 +542,11 @@ set (ATTR_VERBOSE_LEVEL_FILE1 h5diff_attr_v_level1.h5) set (ATTR_VERBOSE_LEVEL_FILE2 h5diff_attr_v_level2.h5) # strings - set (STRINGS1 diff_strings1.h5) - set (STRINGS2 diff_strings2.h5) + set (STRINGS1 h5diff_strings1.h5) + set (STRINGS2 h5diff_strings2.h5) + # epsilon + set (EPS1 h5diff_eps1.h5) + set (EPS2 h5diff_eps2.h5) # VDS tests set (FILEV1 1_vds.h5) @@ -926,6 +932,8 @@ h5diff_v3.out.err h5diff_vlstr.out h5diff_vlstr.out.err + h5diff_eps.out + h5diff_eps.out.err ) set_tests_properties (H5DIFF-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") if (last_test) @@ -1107,6 +1115,9 @@ ADD_H5_TEST (h5diff_609 0 -d 200 ${FILE1} ${FILE2} g1/dset3 g1/dset4) # 6.10: number smaller than smallest difference ADD_H5_TEST (h5diff_610 1 -d 1 ${FILE1} ${FILE2} g1/dset3 g1/dset4) +# eps: number smaller than epsilon +ADD_H5_TEST (h5diff_eps 0 -v3 -d 1e-16 ${EPS1} ${EPS2}) + # ############################################################################## # # -p # ############################################################################## @@ -1492,9 +1503,9 @@ ADD_H5_TEST (h5diff_484 0 -v --exclude-path "/dset3" ${EXCLUDE_FILE1_1} ${EXCLUD # Only one file contains unique objs. Common objs are same. # (HDFFV-7837) # -ADD_H5_TEST (h5diff_485 0 -v --exclude-path "/group1" h5diff_exclude3-1.h5 h5diff_exclude3-2.h5) -ADD_H5_TEST (h5diff_486 0 -v --exclude-path "/group1" h5diff_exclude3-2.h5 h5diff_exclude3-1.h5) -ADD_H5_TEST (h5diff_487 1 -v --exclude-path "/group1/dset" h5diff_exclude3-1.h5 h5diff_exclude3-2.h5) +ADD_H5_TEST (h5diff_485 0 -v --exclude-path "/group1" ${EXCLUDE_FILE3_1} ${EXCLUDE_FILE3_2}) +ADD_H5_TEST (h5diff_486 0 -v --exclude-path "/group1" ${EXCLUDE_FILE3_2} ${EXCLUDE_FILE3_1}) +ADD_H5_TEST (h5diff_487 1 -v --exclude-path "/group1/dset" ${EXCLUDE_FILE3_1} ${EXCLUDE_FILE3_2}) # ############################################################################## # # diff various multiple vlen and fixed strings in a compound type dataset @@ -1528,8 +1539,6 @@ ADD_H5_TEST (h5diff_646 1 -v --use-system-epsilon -p 0.05 ${FILE1} ${FILE2} /g1/ # ############################################################################## # # Test array variances # ############################################################################## -# -# Test with -d , -p and --use-system-epsilon. ADD_H5_TEST (h5diff_800 1 -v ${FILE7} ${FILE8} /g1/array /g1/array) ADD_H5_TEST (h5diff_801 1 -v ${FILE7} ${FILE8A} /g1/array /g1/array) diff --git a/tools/test/h5diff/h5diffgentest.c b/tools/test/h5diff/h5diffgentest.c index 1d5354f..bdc2ddc 100644 --- a/tools/test/h5diff/h5diffgentest.c +++ b/tools/test/h5diff/h5diffgentest.c @@ -94,8 +94,11 @@ size_t H5TOOLS_MALLOCSIZE = (128 * 1024 * 1024); #define NON_COMPARBLES1 "non_comparables1.h5" #define NON_COMPARBLES2 "non_comparables2.h5" /* string dataset and attribute */ -#define DIFF_STRINGS1 "diff_strings1.h5" -#define DIFF_STRINGS2 "diff_strings2.h5" +#define DIFF_STRINGS1 "h5diff_strings1.h5" +#define DIFF_STRINGS2 "h5diff_strings2.h5" +/* double dataset and epsilon */ +#define DIFF_EPS1 "h5diff_eps1.h5" +#define DIFF_EPS2 "h5diff_eps2.h5" #define UIMAX 4294967295u /*Maximum value for a variable of type unsigned int */ #define STR_SIZE 3 @@ -110,7 +113,7 @@ size_t H5TOOLS_MALLOCSIZE = (128 * 1024 * 1024); /* Error macros */ #define AT() HDprintf("ERROR at %s:%d in %s()...\n", __FILE__, __LINE__, FUNC); -#define PROGRAM_ERROR {AT(); goto error;} +#define PROGRAM_ERROR do {AT(); goto error;} while(0) /* A UD link traversal function. Shouldn't actually be called. */ static hid_t @@ -172,6 +175,7 @@ static void test_comps_vlen_arry(const char *fname, const char *dset, static void test_data_nocomparables(const char *fname, int diff); static void test_objs_nocomparables(const char *fname1, const char *fname2); static void test_objs_strings(const char *fname, const char *fname2); +static void test_double_epsilon(const char *fname1, const char *fname2); /* called by test_attributes() and test_datasets() */ static void write_attr_strings(hid_t loc_id, const char* dset_name, hid_t fid, int make_diffs); @@ -288,6 +292,9 @@ int main(void) /* string dataset and attribute. HDFFV-10028 */ test_objs_strings(DIFF_STRINGS1, DIFF_STRINGS2); + /* double dataset and epsilion. HDFFV-10897 */ + test_double_epsilon(DIFF_EPS1, DIFF_EPS2); + return EXIT_SUCCESS; } @@ -4928,73 +4935,73 @@ test_objs_nocomparables(const char *fname1, const char *fname2) *------------------------------------------------------------------------*/ /* file1 */ if((fid1 = H5Fopen(fname1, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /* file2 */ if((fid2 = H5Fopen(fname2, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /*----------------------------------------------------------------------- * in file1 : add member objects *------------------------------------------------------------------------*/ /* parent group */ if((topgid1 = H5Gcreate2(fid1, "diffobjtypes", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /* dataset */ if(write_dset(topgid1, 1, dims, "obj1", H5T_NATIVE_INT, data1) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /* group */ if((gid1 = H5Gcreate2(topgid1, "obj2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /* committed type */ if((tid1 = H5Tcopy(H5T_NATIVE_INT)) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; if(H5Tcommit2(topgid1, "obj3", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /*----------------------------------------------------------------------- * in file2 : add member objects *------------------------------------------------------------------------*/ /* parent group */ if((topgid2 = H5Gcreate2(fid2, "diffobjtypes", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /* group */ if((gid2 = H5Gcreate2(topgid2, "obj1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /* committed type */ if((tid2 = H5Tcopy(H5T_NATIVE_INT)) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; if(H5Tcommit2(topgid2, "obj2", tid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /* dataset */ if(write_dset(topgid2, 1, dims, "obj3", H5T_NATIVE_INT, data2) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /*----------------------------------------------------------------------- * Close IDs *-----------------------------------------------------------------------*/ if(H5Fclose(fid1) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; if(H5Fclose(fid2) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; if(H5Gclose(topgid1) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; if(H5Gclose(topgid2) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; if(H5Gclose(gid1) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; if(H5Gclose(gid2) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; if(H5Tclose(tid1) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; if(H5Tclose(tid2) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; return; @@ -8018,6 +8025,60 @@ out: return -1; } +/* + * Function: test_double_epsilion + * + * Purpose: Create test files to compare data with epsilion + */ +static +void test_double_epsilon(const char *fname1, const char *fname2) +{ + hid_t fid1 = H5I_INVALID_HID, fid2 = H5I_INVALID_HID; + hsize_t dims1[2] = { 4, 7 }; + hsize_t dims2[2] = { 4, 7 }; + double wdata[4][7]; + int i, j; + + /*------------------------------------------------------------------------- + * create two files + *------------------------------------------------------------------------- + */ + if ((fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + PROGRAM_ERROR; + if ((fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + PROGRAM_ERROR; + + /* + * Initialize data. + */ + for (i=0; i<4; i++) + for (j=0; j<7; j++) + wdata[i][j] = 0.0; + + /* dataset */ + if(write_dset(fid1, 2, dims1, "dataset", H5T_IEEE_F64LE, wdata) < 0) + PROGRAM_ERROR; + + /* + * Initialize data. + */ + for (i=0; i<4; i++) + for (j=0; j<7; j++) + wdata[i][j] = (double)1.e-19; + + /* dataset */ + if(write_dset(fid2, 2, dims1, "dataset", H5T_IEEE_F64LE, wdata) < 0) + PROGRAM_ERROR; + +error: + H5E_BEGIN_TRY { + H5Fclose(fid1); + H5Fclose(fid2); + } H5E_END_TRY; + + return; +} + /*------------------------------------------------------------------------- * Function: write_attr * @@ -8073,22 +8134,22 @@ write_dset(hid_t loc_id, int rank, hsize_t *dims, const char *name, hid_t tid, v /* create a space */ if((sid = H5Screate_simple(rank, dims, NULL)) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /* create the dataset */ if((did = H5Dcreate2(loc_id, name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /* write */ if(buf) if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; /* close */ if(H5Dclose(did) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; if(H5Sclose(sid) < 0) - PROGRAM_ERROR + PROGRAM_ERROR; return SUCCEED; diff --git a/tools/test/h5diff/testfiles/h5diff_10.txt b/tools/test/h5diff/testfiles/h5diff_10.txt index 0a2fd12..b5ff01a 100644 --- a/tools/test/h5diff/testfiles/h5diff_10.txt +++ b/tools/test/h5diff/testfiles/h5diff_10.txt @@ -17,10 +17,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] Verbose mode with level. Print differences and list of objects. Level of detail depends on value of N: 0 : Identical to '-v' or '--verbose'. - 1 : All level 0 information plus one-line attribute - status summary. - 2 : All level 1 information plus extended attribute - status report. + 1 : All level 0 information plus one-line attribute status summary. + 2 : All level 1 information plus extended attribute status report. + 3 : All level 2 information plus file names. -q, --quiet Quiet mode. Do not produce output. --enable-error-stack @@ -109,6 +108,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] excluded. This option can be used repeatedly to exclude multiple paths. + --exclude-attribute "path/to/object/with/attribute" + Exclude attributes on the specified path to an object when comparing files or groups. + + If there are multiple paths to an object, only the specified path(s) + will be excluded; the comparison will include any path not explicitly + excluded. + This option can be used repeatedly to exclude multiple paths. + Modes of output: Default mode: print the number of differences found and where they occured -r Report mode: print the above plus the differences diff --git a/tools/test/h5diff/testfiles/h5diff_58_ref.txt b/tools/test/h5diff/testfiles/h5diff_58_ref.txt index 6fa2299..48a4b33 100644 --- a/tools/test/h5diff/testfiles/h5diff_58_ref.txt +++ b/tools/test/h5diff/testfiles/h5diff_58_ref.txt @@ -1,32 +1,32 @@ dataset: </g1/reference2D> and </g1/reference2D> size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 diff --git a/tools/test/h5diff/testfiles/h5diff_600.txt b/tools/test/h5diff/testfiles/h5diff_600.txt index 55b8da7..f52d8cc 100644 --- a/tools/test/h5diff/testfiles/h5diff_600.txt +++ b/tools/test/h5diff/testfiles/h5diff_600.txt @@ -17,10 +17,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] Verbose mode with level. Print differences and list of objects. Level of detail depends on value of N: 0 : Identical to '-v' or '--verbose'. - 1 : All level 0 information plus one-line attribute - status summary. - 2 : All level 1 information plus extended attribute - status report. + 1 : All level 0 information plus one-line attribute status summary. + 2 : All level 1 information plus extended attribute status report. + 3 : All level 2 information plus file names. -q, --quiet Quiet mode. Do not produce output. --enable-error-stack @@ -109,6 +108,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] excluded. This option can be used repeatedly to exclude multiple paths. + --exclude-attribute "path/to/object/with/attribute" + Exclude attributes on the specified path to an object when comparing files or groups. + + If there are multiple paths to an object, only the specified path(s) + will be excluded; the comparison will include any path not explicitly + excluded. + This option can be used repeatedly to exclude multiple paths. + Modes of output: Default mode: print the number of differences found and where they occured -r Report mode: print the above plus the differences diff --git a/tools/test/h5diff/testfiles/h5diff_603.txt b/tools/test/h5diff/testfiles/h5diff_603.txt index 36cd0ef..84111b3 100644 --- a/tools/test/h5diff/testfiles/h5diff_603.txt +++ b/tools/test/h5diff/testfiles/h5diff_603.txt @@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] Verbose mode with level. Print differences and list of objects. Level of detail depends on value of N: 0 : Identical to '-v' or '--verbose'. - 1 : All level 0 information plus one-line attribute - status summary. - 2 : All level 1 information plus extended attribute - status report. + 1 : All level 0 information plus one-line attribute status summary. + 2 : All level 1 information plus extended attribute status report. + 3 : All level 2 information plus file names. -q, --quiet Quiet mode. Do not produce output. --enable-error-stack @@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] excluded. This option can be used repeatedly to exclude multiple paths. + --exclude-attribute "path/to/object/with/attribute" + Exclude attributes on the specified path to an object when comparing files or groups. + + If there are multiple paths to an object, only the specified path(s) + will be excluded; the comparison will include any path not explicitly + excluded. + This option can be used repeatedly to exclude multiple paths. + Modes of output: Default mode: print the number of differences found and where they occured -r Report mode: print the above plus the differences diff --git a/tools/test/h5diff/testfiles/h5diff_606.txt b/tools/test/h5diff/testfiles/h5diff_606.txt index c2e9ac1..d915d36 100644 --- a/tools/test/h5diff/testfiles/h5diff_606.txt +++ b/tools/test/h5diff/testfiles/h5diff_606.txt @@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] Verbose mode with level. Print differences and list of objects. Level of detail depends on value of N: 0 : Identical to '-v' or '--verbose'. - 1 : All level 0 information plus one-line attribute - status summary. - 2 : All level 1 information plus extended attribute - status report. + 1 : All level 0 information plus one-line attribute status summary. + 2 : All level 1 information plus extended attribute status report. + 3 : All level 2 information plus file names. -q, --quiet Quiet mode. Do not produce output. --enable-error-stack @@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] excluded. This option can be used repeatedly to exclude multiple paths. + --exclude-attribute "path/to/object/with/attribute" + Exclude attributes on the specified path to an object when comparing files or groups. + + If there are multiple paths to an object, only the specified path(s) + will be excluded; the comparison will include any path not explicitly + excluded. + This option can be used repeatedly to exclude multiple paths. + Modes of output: Default mode: print the number of differences found and where they occured -r Report mode: print the above plus the differences diff --git a/tools/test/h5diff/testfiles/h5diff_612.txt b/tools/test/h5diff/testfiles/h5diff_612.txt index 2e09432..1ef8cdf 100644 --- a/tools/test/h5diff/testfiles/h5diff_612.txt +++ b/tools/test/h5diff/testfiles/h5diff_612.txt @@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] Verbose mode with level. Print differences and list of objects. Level of detail depends on value of N: 0 : Identical to '-v' or '--verbose'. - 1 : All level 0 information plus one-line attribute - status summary. - 2 : All level 1 information plus extended attribute - status report. + 1 : All level 0 information plus one-line attribute status summary. + 2 : All level 1 information plus extended attribute status report. + 3 : All level 2 information plus file names. -q, --quiet Quiet mode. Do not produce output. --enable-error-stack @@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] excluded. This option can be used repeatedly to exclude multiple paths. + --exclude-attribute "path/to/object/with/attribute" + Exclude attributes on the specified path to an object when comparing files or groups. + + If there are multiple paths to an object, only the specified path(s) + will be excluded; the comparison will include any path not explicitly + excluded. + This option can be used repeatedly to exclude multiple paths. + Modes of output: Default mode: print the number of differences found and where they occured -r Report mode: print the above plus the differences diff --git a/tools/test/h5diff/testfiles/h5diff_615.txt b/tools/test/h5diff/testfiles/h5diff_615.txt index a07de54..881362e 100644 --- a/tools/test/h5diff/testfiles/h5diff_615.txt +++ b/tools/test/h5diff/testfiles/h5diff_615.txt @@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] Verbose mode with level. Print differences and list of objects. Level of detail depends on value of N: 0 : Identical to '-v' or '--verbose'. - 1 : All level 0 information plus one-line attribute - status summary. - 2 : All level 1 information plus extended attribute - status report. + 1 : All level 0 information plus one-line attribute status summary. + 2 : All level 1 information plus extended attribute status report. + 3 : All level 2 information plus file names. -q, --quiet Quiet mode. Do not produce output. --enable-error-stack @@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] excluded. This option can be used repeatedly to exclude multiple paths. + --exclude-attribute "path/to/object/with/attribute" + Exclude attributes on the specified path to an object when comparing files or groups. + + If there are multiple paths to an object, only the specified path(s) + will be excluded; the comparison will include any path not explicitly + excluded. + This option can be used repeatedly to exclude multiple paths. + Modes of output: Default mode: print the number of differences found and where they occured -r Report mode: print the above plus the differences diff --git a/tools/test/h5diff/testfiles/h5diff_621.txt b/tools/test/h5diff/testfiles/h5diff_621.txt index 5f44dd7..ba39a99 100644 --- a/tools/test/h5diff/testfiles/h5diff_621.txt +++ b/tools/test/h5diff/testfiles/h5diff_621.txt @@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] Verbose mode with level. Print differences and list of objects. Level of detail depends on value of N: 0 : Identical to '-v' or '--verbose'. - 1 : All level 0 information plus one-line attribute - status summary. - 2 : All level 1 information plus extended attribute - status report. + 1 : All level 0 information plus one-line attribute status summary. + 2 : All level 1 information plus extended attribute status report. + 3 : All level 2 information plus file names. -q, --quiet Quiet mode. Do not produce output. --enable-error-stack @@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] excluded. This option can be used repeatedly to exclude multiple paths. + --exclude-attribute "path/to/object/with/attribute" + Exclude attributes on the specified path to an object when comparing files or groups. + + If there are multiple paths to an object, only the specified path(s) + will be excluded; the comparison will include any path not explicitly + excluded. + This option can be used repeatedly to exclude multiple paths. + Modes of output: Default mode: print the number of differences found and where they occured -r Report mode: print the above plus the differences diff --git a/tools/test/h5diff/testfiles/h5diff_622.txt b/tools/test/h5diff/testfiles/h5diff_622.txt index 2e28a42..70421fc 100644 --- a/tools/test/h5diff/testfiles/h5diff_622.txt +++ b/tools/test/h5diff/testfiles/h5diff_622.txt @@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] Verbose mode with level. Print differences and list of objects. Level of detail depends on value of N: 0 : Identical to '-v' or '--verbose'. - 1 : All level 0 information plus one-line attribute - status summary. - 2 : All level 1 information plus extended attribute - status report. + 1 : All level 0 information plus one-line attribute status summary. + 2 : All level 1 information plus extended attribute status report. + 3 : All level 2 information plus file names. -q, --quiet Quiet mode. Do not produce output. --enable-error-stack @@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] excluded. This option can be used repeatedly to exclude multiple paths. + --exclude-attribute "path/to/object/with/attribute" + Exclude attributes on the specified path to an object when comparing files or groups. + + If there are multiple paths to an object, only the specified path(s) + will be excluded; the comparison will include any path not explicitly + excluded. + This option can be used repeatedly to exclude multiple paths. + Modes of output: Default mode: print the number of differences found and where they occured -r Report mode: print the above plus the differences diff --git a/tools/test/h5diff/testfiles/h5diff_623.txt b/tools/test/h5diff/testfiles/h5diff_623.txt index 21cb90a..0d74268 100644 --- a/tools/test/h5diff/testfiles/h5diff_623.txt +++ b/tools/test/h5diff/testfiles/h5diff_623.txt @@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] Verbose mode with level. Print differences and list of objects. Level of detail depends on value of N: 0 : Identical to '-v' or '--verbose'. - 1 : All level 0 information plus one-line attribute - status summary. - 2 : All level 1 information plus extended attribute - status report. + 1 : All level 0 information plus one-line attribute status summary. + 2 : All level 1 information plus extended attribute status report. + 3 : All level 2 information plus file names. -q, --quiet Quiet mode. Do not produce output. --enable-error-stack @@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] excluded. This option can be used repeatedly to exclude multiple paths. + --exclude-attribute "path/to/object/with/attribute" + Exclude attributes on the specified path to an object when comparing files or groups. + + If there are multiple paths to an object, only the specified path(s) + will be excluded; the comparison will include any path not explicitly + excluded. + This option can be used repeatedly to exclude multiple paths. + Modes of output: Default mode: print the number of differences found and where they occured -r Report mode: print the above plus the differences diff --git a/tools/test/h5diff/testfiles/h5diff_624.txt b/tools/test/h5diff/testfiles/h5diff_624.txt index 92c98d9..cb8b8b4 100644 --- a/tools/test/h5diff/testfiles/h5diff_624.txt +++ b/tools/test/h5diff/testfiles/h5diff_624.txt @@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] Verbose mode with level. Print differences and list of objects. Level of detail depends on value of N: 0 : Identical to '-v' or '--verbose'. - 1 : All level 0 information plus one-line attribute - status summary. - 2 : All level 1 information plus extended attribute - status report. + 1 : All level 0 information plus one-line attribute status summary. + 2 : All level 1 information plus extended attribute status report. + 3 : All level 2 information plus file names. -q, --quiet Quiet mode. Do not produce output. --enable-error-stack @@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] excluded. This option can be used repeatedly to exclude multiple paths. + --exclude-attribute "path/to/object/with/attribute" + Exclude attributes on the specified path to an object when comparing files or groups. + + If there are multiple paths to an object, only the specified path(s) + will be excluded; the comparison will include any path not explicitly + excluded. + This option can be used repeatedly to exclude multiple paths. + Modes of output: Default mode: print the number of differences found and where they occured -r Report mode: print the above plus the differences diff --git a/tools/test/h5diff/testfiles/h5diff_70.txt b/tools/test/h5diff/testfiles/h5diff_70.txt index efa34ea..b0b8bf6 100644 --- a/tools/test/h5diff/testfiles/h5diff_70.txt +++ b/tools/test/h5diff/testfiles/h5diff_70.txt @@ -1183,10 +1183,42 @@ position opaque3D of </dset> opaque3D of </dset> difference [ 3 2 1 ] 24 0 24 24 differences found attribute: <reference of </dset>> and <reference of </dset>> +Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset +Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset 0 differences found attribute: <reference2D of </dset>> and <reference2D of </dset>> +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset 0 differences found attribute: <reference3D of </dset>> and <reference3D of </dset>> +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset 0 differences found attribute: <string of </dset>> and <string of </dset>> size: [2] [2] diff --git a/tools/test/h5diff/testfiles/h5diff_700.txt b/tools/test/h5diff/testfiles/h5diff_700.txt index 851a407..6cf9893 100644 --- a/tools/test/h5diff/testfiles/h5diff_700.txt +++ b/tools/test/h5diff/testfiles/h5diff_700.txt @@ -1187,10 +1187,42 @@ position opaque3D of </dset> opaque3D of </dset> difference [ 3 2 1 ] 24 0 24 24 differences found attribute: <reference of </dset>> and <reference of </dset>> +Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset +Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset 0 differences found attribute: <reference2D of </dset>> and <reference2D of </dset>> +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset 0 differences found attribute: <reference3D of </dset>> and <reference3D of </dset>> +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset 0 differences found attribute: <string of </dset>> and <string of </dset>> size: [2] [2] diff --git a/tools/test/h5diff/testfiles/h5diff_701.txt b/tools/test/h5diff/testfiles/h5diff_701.txt index 33f1a0f..4187754 100644 --- a/tools/test/h5diff/testfiles/h5diff_701.txt +++ b/tools/test/h5diff/testfiles/h5diff_701.txt @@ -1254,10 +1254,42 @@ position opaque3D of </dset> opaque3D of </dset> difference [ 3 2 1 ] 24 0 24 24 differences found attribute: <reference of </dset>> and <reference of </dset>> +Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset +Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset 0 differences found attribute: <reference2D of </dset>> and <reference2D of </dset>> +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset 0 differences found attribute: <reference3D of </dset>> and <reference3D of </dset>> +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset 0 differences found attribute: <string of </dset>> and <string of </dset>> size: [2] [2] diff --git a/tools/test/h5diff/testfiles/h5diff_702.txt b/tools/test/h5diff/testfiles/h5diff_702.txt index 851a407..6cf9893 100644 --- a/tools/test/h5diff/testfiles/h5diff_702.txt +++ b/tools/test/h5diff/testfiles/h5diff_702.txt @@ -1187,10 +1187,42 @@ position opaque3D of </dset> opaque3D of </dset> difference [ 3 2 1 ] 24 0 24 24 differences found attribute: <reference of </dset>> and <reference of </dset>> +Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset +Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset 0 differences found attribute: <reference2D of </dset>> and <reference2D of </dset>> +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset 0 differences found attribute: <reference3D of </dset>> and <reference3D of </dset>> +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset 0 differences found attribute: <string of </dset>> and <string of </dset>> size: [2] [2] diff --git a/tools/test/h5diff/testfiles/h5diff_703.txt b/tools/test/h5diff/testfiles/h5diff_703.txt index 33f1a0f..4187754 100644 --- a/tools/test/h5diff/testfiles/h5diff_703.txt +++ b/tools/test/h5diff/testfiles/h5diff_703.txt @@ -1254,10 +1254,42 @@ position opaque3D of </dset> opaque3D of </dset> difference [ 3 2 1 ] 24 0 24 24 differences found attribute: <reference of </dset>> and <reference of </dset>> +Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset +Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset 0 differences found attribute: <reference2D of </dset>> and <reference2D of </dset>> +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset +Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset 0 differences found attribute: <reference3D of </dset>> and <reference3D of </dset>> +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset +Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset 0 differences found attribute: <string of </dset>> and <string of </dset>> size: [2] [2] diff --git a/tools/test/h5diff/testfiles/h5diff_80.txt b/tools/test/h5diff/testfiles/h5diff_80.txt index b223eed..11dccd8 100644 --- a/tools/test/h5diff/testfiles/h5diff_80.txt +++ b/tools/test/h5diff/testfiles/h5diff_80.txt @@ -528,166 +528,166 @@ position opaque3D opaque3D difference 24 differences found dataset: </g1/reference> and </g1/reference> size: [2] [2] -position difference +position reference reference difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference reference difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 4 differences found dataset: </g1/reference2D> and </g1/reference2D> size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference2D reference2D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 12 differences found dataset: </g1/reference3D> and </g1/reference3D> size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 size: [2] [2] -position difference +position reference3D reference3D difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 diff --git a/tools/test/h5diff/testfiles/h5diff_eps.txt b/tools/test/h5diff/testfiles/h5diff_eps.txt new file mode 100644 index 0000000..3a71366 --- /dev/null +++ b/tools/test/h5diff/testfiles/h5diff_eps.txt @@ -0,0 +1,17 @@ +file1: h5diff_eps1.h5 +file2: h5diff_eps2.h5 + +file1 file2 +--------------------------------------- + x x / + x x /DS1 + + +group : </> and </> +0 differences found +Attributes status: 0 common, 0 only in obj1, 0 only in obj2 + +dataset: </DS1> and </DS1> +0 differences found +Attributes status: 0 common, 0 only in obj1, 0 only in obj2 +EXIT CODE: 0 diff --git a/tools/test/h5diff/testfiles/h5diff_eps1.h5 b/tools/test/h5diff/testfiles/h5diff_eps1.h5 Binary files differnew file mode 100644 index 0000000..2803a1d --- /dev/null +++ b/tools/test/h5diff/testfiles/h5diff_eps1.h5 diff --git a/tools/test/h5diff/testfiles/h5diff_eps2.h5 b/tools/test/h5diff/testfiles/h5diff_eps2.h5 Binary files differnew file mode 100644 index 0000000..4acf27a --- /dev/null +++ b/tools/test/h5diff/testfiles/h5diff_eps2.h5 diff --git a/tools/test/h5diff/testfiles/h5diff_reg.txt b/tools/test/h5diff/testfiles/h5diff_reg.txt index d4f5415..ecb6275 100644 --- a/tools/test/h5diff/testfiles/h5diff_reg.txt +++ b/tools/test/h5diff/testfiles/h5diff_reg.txt @@ -1,12 +1,11 @@ dataset: </Dataset3> and </Dataset3> -attribute: <Attr1 of <(null)>> and <Attr1 of <(null)>> +attribute: <Attr1 of <Dataset3>> and <Attr1 of <Dataset3>> 0 differences found -Warning: Cannot open referenced attribute: attribute 1 -Warning: Cannot open referenced attribute: attribute 2 -attribute: <Attr2 of <(null)>> and <Attr2 of <(null)>> +Warning: Cannot open referenced attribute1 +attribute: <Attr2 of <Dataset3>> and <Attr2 of <Dataset3>> 0 differences found -attribute: <Attr3 of <(null)>> and <Attr3 of <(null)>> +attribute: <Attr3 of <Dataset3>> and <Attr3 of <Dataset3>> 0 differences found 0 differences found obj1 obj2 diff --git a/tools/test/h5diff/testfiles/diff_strings1.h5 b/tools/test/h5diff/testfiles/h5diff_strings1.h5 Binary files differindex 0f8b380..0f8b380 100644 --- a/tools/test/h5diff/testfiles/diff_strings1.h5 +++ b/tools/test/h5diff/testfiles/h5diff_strings1.h5 diff --git a/tools/test/h5diff/testfiles/diff_strings2.h5 b/tools/test/h5diff/testfiles/h5diff_strings2.h5 Binary files differindex e8520ae..e8520ae 100644 --- a/tools/test/h5diff/testfiles/diff_strings2.h5 +++ b/tools/test/h5diff/testfiles/h5diff_strings2.h5 diff --git a/tools/test/h5diff/testh5diff.sh.in b/tools/test/h5diff/testh5diff.sh.in index 2d490a8..4e622ee 100644 --- a/tools/test/h5diff/testh5diff.sh.in +++ b/tools/test/h5diff/testh5diff.sh.in @@ -85,6 +85,7 @@ $SRC_H5DIFF_TESTFILES/h5diff_attr2.h5 $SRC_H5DIFF_TESTFILES/h5diff_attr3.h5 $SRC_H5DIFF_TESTFILES/h5diff_dset1.h5 $SRC_H5DIFF_TESTFILES/h5diff_dset2.h5 +$SRC_H5DIFF_TESTFILES/h5diff_dset3.h5 $SRC_H5DIFF_TESTFILES/h5diff_hyper1.h5 $SRC_H5DIFF_TESTFILES/h5diff_hyper2.h5 $SRC_H5DIFF_TESTFILES/h5diff_empty.h5 @@ -119,8 +120,10 @@ $SRC_H5DIFF_TESTFILES/h5diff_attr_v_level2.h5 $SRC_H5DIFF_TESTFILES/h5diff_enum_invalid_values.h5 $SRC_H5DIFF_TESTFILES/non_comparables1.h5 $SRC_H5DIFF_TESTFILES/non_comparables2.h5 -$SRC_H5DIFF_TESTFILES/diff_strings1.h5 -$SRC_H5DIFF_TESTFILES/diff_strings2.h5 +$SRC_H5DIFF_TESTFILES/h5diff_strings1.h5 +$SRC_H5DIFF_TESTFILES/h5diff_strings2.h5 +$SRC_H5DIFF_TESTFILES/h5diff_eps1.h5 +$SRC_H5DIFF_TESTFILES/h5diff_eps2.h5 $SRC_TOOLS_TESTFILES/tvlstr.h5 " @@ -349,6 +352,8 @@ $SRC_H5DIFF_TESTFILES/h5diff_708.txt $SRC_H5DIFF_TESTFILES/h5diff_709.txt $SRC_H5DIFF_TESTFILES/h5diff_710.txt $SRC_H5DIFF_TESTFILES/h5diff_80.txt +$SRC_H5DIFF_TESTFILES/h5diff_800.txt +$SRC_H5DIFF_TESTFILES/h5diff_801.txt $SRC_H5DIFF_TESTFILES/h5diff_90.txt $SRC_H5DIFF_TESTFILES/h5diff_8625.txt $SRC_H5DIFF_TESTFILES/h5diff_8639.txt @@ -357,6 +362,7 @@ $SRC_H5DIFF_TESTFILES/h5diff_v1.txt $SRC_H5DIFF_TESTFILES/h5diff_v2.txt $SRC_H5DIFF_TESTFILES/h5diff_v3.txt $SRC_H5DIFF_TESTFILES/h5diff_vlstr.txt +$SRC_H5DIFF_TESTFILES/h5diff_eps.txt " # @@ -717,10 +723,10 @@ TOOLTEST h5diff_59.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset11a dset11b # Strings # ( HDFFV-10128 ) -TOOLTEST h5diff_60.txt -v diff_strings1.h5 diff_strings2.h5 string1 string1 -TOOLTEST h5diff_61.txt -v diff_strings1.h5 diff_strings2.h5 string2 string2 -TOOLTEST h5diff_62.txt -v diff_strings1.h5 diff_strings2.h5 string3 string3 -TOOLTEST h5diff_63.txt -v diff_strings1.h5 diff_strings2.h5 string4 string4 +TOOLTEST h5diff_60.txt -v h5diff_strings1.h5 h5diff_strings2.h5 string1 string1 +TOOLTEST h5diff_61.txt -v h5diff_strings1.h5 h5diff_strings2.h5 string2 string2 +TOOLTEST h5diff_62.txt -v h5diff_strings1.h5 h5diff_strings2.h5 string3 string3 +TOOLTEST h5diff_63.txt -v h5diff_strings1.h5 h5diff_strings2.h5 string4 string4 # ############################################################################## # # Error messages @@ -763,6 +769,9 @@ TOOLTEST h5diff_609.txt -d 200 h5diff_basic1.h5 h5diff_basic2.h5 g1/dset3 g1/dse # 6.10: number smaller than smallest difference TOOLTEST h5diff_610.txt -d 1 h5diff_basic1.h5 h5diff_basic2.h5 g1/dset3 g1/dset4 +# eps: number smaller than epsilon +TOOLTEST h5diff_eps.txt -v3 -d 1e-16 h5diff_eps1.h5 h5diff_eps2.h5 + # ############################################################################## # # -p @@ -1184,6 +1193,12 @@ TOOLTEST h5diff_645.txt -v -p 0.05 --use-system-epsilon h5diff_basic1.h5 h5diff_ TOOLTEST h5diff_646.txt -v --use-system-epsilon -p 0.05 h5diff_basic1.h5 h5diff_basic2.h5 /g1/dset3 /g1/dset4 # ############################################################################## +# # Test array variances +# ############################################################################## +TOOLTEST h5diff_800.txt -v h5diff_dset1.h5 h5diff_dset2.h5 /g1/array /g1/array +TOOLTEST h5diff_801.txt -v h5diff_dset1.h5 h5diff_dset3.h5 /g1/array /g1/array + +# ############################################################################## # VDS tests # ############################################################################## TOOLTEST h5diff_v1.txt -v 1_vds.h5 2_vds.h5 diff --git a/tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err b/tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err index d85a999..e72892d 100644 --- a/tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err +++ b/tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err @@ -1,8 +1 @@ h5format_convert error: unable to downgrade dataset "/DSET_ERR" -H5tools-DIAG: Error detected in HDF5:tools (version (number)) thread (IDs): - #000: (file name) line (number) in h5trav_visit(): traverse failed - major: Failure in tools library - minor: error in function - #001: (file name) line (number) in traverse(): H5Lvisit_by_name failed - major: Failure in tools library - minor: error in function diff --git a/tools/test/h5format_convert/testh5fc.sh.in b/tools/test/h5format_convert/testh5fc.sh.in index d780a3d..2cdd445 100644 --- a/tools/test/h5format_convert/testh5fc.sh.in +++ b/tools/test/h5format_convert/testh5fc.sh.in @@ -483,7 +483,7 @@ TOOLTEST_OUT h5fc_v_n_all.ddl h5fc_non_v3.h5 -v -n # # # h5format_convert -v h5fc_err_level.h5 (error encountered in converting the dataset) -TOOLTEST_MASK_OUT h5fc_v_err.ddl h5fc_err_level.h5 -v --enable-error-stack +TOOLTEST_MASK_OUT h5fc_v_err.ddl h5fc_err_level.h5 -v # # # diff --git a/tools/test/h5jam/tellub.c b/tools/test/h5jam/tellub.c index 559c677..e7bb561 100644 --- a/tools/test/h5jam/tellub.c +++ b/tools/test/h5jam/tellub.c @@ -70,11 +70,11 @@ parse_command_line (int argc, const char *argv[]) switch ((char) opt) { case 'h': usage (h5tools_getprogname()); - HDexit(EXIT_SUCCESS); + h5tools_setstatus(EXIT_SUCCESS); case '?': default: usage (h5tools_getprogname()); - HDexit(EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); } } @@ -82,10 +82,17 @@ parse_command_line (int argc, const char *argv[]) if (argc <= opt_ind) { error_msg("missing file name\n"); usage (h5tools_getprogname()); - HDexit(EXIT_FAILURE); + h5tools_setstatus(EXIT_FAILURE); } } /* end parse_command_line() */ +static void +leave(int ret) +{ + h5tools_close(); + HDexit(ret); +} + /*------------------------------------------------------------------------- * Function: main * @@ -98,8 +105,6 @@ int main (int argc, const char *argv[]) { char *ifname; - void *edata; - H5E_auto2_t func; hid_t ifile; hsize_t usize; htri_t testval; @@ -112,16 +117,16 @@ main (int argc, const char *argv[]) /* Initialize h5tools lib */ h5tools_init(); - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - parse_command_line(argc, argv); + /* enable error reporting if command line option */ + h5tools_error_report(); + if(argc <= (opt_ind)) { error_msg("missing file name\n"); usage (h5tools_getprogname()); - return EXIT_FAILURE; + h5tools_setstatus(EXIT_FAILURE); + goto done; } ifname = HDstrdup(argv[opt_ind]); @@ -130,33 +135,38 @@ main (int argc, const char *argv[]) if(testval <= 0) { error_msg("Input HDF5 file is not HDF \"%s\"\n", ifname); - return EXIT_FAILURE; + h5tools_setstatus(EXIT_FAILURE); + goto done; } ifile = H5Fopen(ifname, H5F_ACC_RDONLY, H5P_DEFAULT); if(ifile < 0) { error_msg("Can't open input HDF5 file \"%s\"\n", ifname); - return EXIT_FAILURE; + h5tools_setstatus(EXIT_FAILURE); + goto done; } plist = H5Fget_create_plist(ifile); if(plist < 0) { error_msg("Can't get file creation plist for file \"%s\"\n", ifname); - return EXIT_FAILURE; + h5tools_setstatus(EXIT_FAILURE); + goto done; } status = H5Pget_userblock(plist, &usize); if(status < 0) { error_msg("Can't get user block for file \"%s\"\n", ifname); - return EXIT_FAILURE; + h5tools_setstatus(EXIT_FAILURE); + goto done; } HDprintf("%ld\n", (long) usize); +done: H5Pclose (plist); H5Fclose (ifile); - return EXIT_SUCCESS; + leave(h5tools_getstatus()); } /* end main() */ diff --git a/tools/testfiles/trefer_attrR.ddl b/tools/testfiles/trefer_attrR.ddl index e64c8e6..118e7bf 100644 --- a/tools/testfiles/trefer_attrR.ddl +++ b/tools/testfiles/trefer_attrR.ddl @@ -12,16 +12,16 @@ GROUP "/" { } } ATTRIBUTE "trefer_attr.h5/Group1/Dataset2/Attr1" { - NULL + NULL } - ATTRIBUTE "trefer_attr.h5/Group1/Attr2" { + ATTRIBUTE "trefer_attr.h5/Group1/Attr2" { DATATYPE H5T_STD_U32LE DATASPACE SIMPLE { ( 4 ) / ( 4 ) } DATA { (0): 1, 4, 7, 10 } } - ATTRIBUTE "trefer_attr.h5/Group1/Datatype1/Attr3" { + ATTRIBUTE "trefer_attr.h5/Group1/Datatype1/Attr3" { DATATYPE H5T_STD_U32LE DATASPACE SIMPLE { ( 4 ) / ( 4 ) } DATA { diff --git a/tools/testfiles/trefer_extR.ddl b/tools/testfiles/trefer_extR.ddl index 3d4647d..a96e5fd 100644 --- a/tools/testfiles/trefer_extR.ddl +++ b/tools/testfiles/trefer_extR.ddl @@ -12,16 +12,16 @@ GROUP "/" { } } ATTRIBUTE "trefer_ext1.h5/Group1/Dataset2/Attr1" { - NULL + NULL } - ATTRIBUTE "trefer_ext1.h5/Group1/Attr2" { + ATTRIBUTE "trefer_ext1.h5/Group1/Attr2" { DATATYPE H5T_STD_U32LE DATASPACE SIMPLE { ( 4 ) / ( 4 ) } DATA { (0): 1, 4, 7, 10 } } - ATTRIBUTE "trefer_ext1.h5/Group1/Datatype1/Attr3" { + ATTRIBUTE "trefer_ext1.h5/Group1/Datatype1/Attr3" { DATATYPE H5T_STD_U32LE DATASPACE SIMPLE { ( 4 ) / ( 4 ) } DATA { |