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-rw-r--r--java/src/jni/h5aImp.c6
-rw-r--r--java/src/jni/h5dImp.c6
-rw-r--r--java/src/jni/h5util.c93
-rw-r--r--src/H5private.h38
-rw-r--r--tools/lib/h5tools.h4
-rw-r--r--tools/lib/h5tools_str.c41
6 files changed, 113 insertions, 75 deletions
diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c
index 9f22665..099c88d 100644
--- a/java/src/jni/h5aImp.c
+++ b/java/src/jni/h5aImp.c
@@ -1390,7 +1390,7 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- hdset_reg_ref_t *ref_data = NULL;
+ H5R_ref_t *ref_data = NULL;
h5str_t h5str;
jstring jstr;
jsize i, n;
@@ -1405,7 +1405,7 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_reg_ref: buf length < 0");
}
- if (NULL == (ref_data = (hdset_reg_ref_t *) HDcalloc(1, (size_t)n * sizeof(hdset_reg_ref_t))))
+ if (NULL == (ref_data = (H5R_ref_t *) HDcalloc(1, (size_t)n * sizeof(H5R_ref_t))))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate read buffer");
if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, ref_data)) < 0)
@@ -1419,7 +1419,7 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref
for (i = 0; i < n; i++) {
h5str.s[0] = '\0';
- if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, ref_data[i], 0, 0))
+ if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, (void*)&ref_data[i], 0, 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c
index b395189..a305eef 100644
--- a/java/src/jni/h5dImp.c
+++ b/java/src/jni/h5dImp.c
@@ -1630,7 +1630,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref
jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- hdset_reg_ref_t *ref_data = NULL;
+ H5R_ref_t *ref_data = NULL;
h5str_t h5str;
jstring jstr;
jsize i, n;
@@ -1645,7 +1645,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_reg_ref: buf length < 0");
}
- if (NULL == (ref_data = (hdset_reg_ref_t *) HDcalloc(1, (size_t)n * sizeof(hdset_reg_ref_t))))
+ if (NULL == (ref_data = (H5R_ref_t *) HDcalloc(1, (size_t)n * sizeof(H5R_ref_t))))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate read buffer");
if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, xfer_plist_id, ref_data)) < 0)
@@ -1659,7 +1659,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref
for (i = 0; i < n; i++) {
h5str.s[0] = '\0';
- if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, &ref_data[i], 0, 0))
+ if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, (void*)&ref_data[i], 0, 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c
index cd54f8b..367f5e0 100644
--- a/java/src/jni/h5util.c
+++ b/java/src/jni/h5util.c
@@ -642,21 +642,22 @@ done:
void
h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref_p)
{
- ssize_t buf_size, status;
+ ssize_t buf_size;
char *ref_name = NULL;
const H5R_ref_t *ref_vp = (H5R_ref_t *)ref_p;
UNUSED(container);
- if (!h5str_append(out_str, " "))
+ if (!h5str_append(out_str, " \""))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
buf_size = H5Rget_file_name(ref_vp, NULL, 0);
if (buf_size) {
ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1);
- status = H5Rget_file_name(ref_vp, ref_name, buf_size + 1);
- ref_name[buf_size] = '\0';
- if (!h5str_append(out_str, ref_name))
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ if (H5Rget_file_name(ref_vp, ref_name, buf_size + 1) >= 0) {
+ ref_name[buf_size] = '\0';
+ if (!h5str_append(out_str, ref_name))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
HDfree(ref_name);
ref_name = NULL;
}
@@ -664,10 +665,11 @@ h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref
buf_size = H5Rget_obj_name(ref_vp, H5P_DEFAULT, NULL, 0);
if (buf_size) {
ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1);
- status = H5Rget_obj_name(ref_vp, H5P_DEFAULT, ref_name, buf_size + 1);
- ref_name[buf_size] = '\0';
- if (!h5str_append(out_str, ref_name))
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ if (H5Rget_obj_name(ref_vp, H5P_DEFAULT, ref_name, buf_size + 1) >= 0) {
+ ref_name[buf_size] = '\0';
+ if (!h5str_append(out_str, ref_name))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
HDfree(ref_name);
ref_name = NULL;
}
@@ -676,14 +678,17 @@ h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref
buf_size = H5Rget_attr_name(ref_vp, NULL, 0);
if (buf_size) {
ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1);
- status = H5Rget_attr_name(ref_vp, ref_name, buf_size + 1);
- ref_name[buf_size] = '\0';
- if (!h5str_append(out_str, ref_name))
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ if (H5Rget_attr_name(ref_vp, ref_name, buf_size + 1) >= 0) {
+ ref_name[buf_size] = '\0';
+ if (!h5str_append(out_str, ref_name))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
HDfree(ref_name);
ref_name = NULL;
}
}
+ if (!h5str_append(out_str, "\""))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
if (ref_name)
HDfree(ref_name);
@@ -703,8 +708,11 @@ h5str_sprintf
unsigned char *ucptr = (unsigned char *) in_buf;
static char fmt_llong[8], fmt_ullong[8];
H5T_class_t tclass = H5T_NO_CLASS;
+ H5T_str_t pad;
size_t typeSize = 0;
+ H5T_sign_t nsign = H5T_SGN_ERROR;
hid_t mtid = H5I_INVALID_HID;
+ hid_t obj = H5I_INVALID_HID;
char *cptr = (char *) in_buf;
char *this_str = NULL;
int n;
@@ -719,12 +727,14 @@ h5str_sprintf
H5_LIBRARY_ERROR(ENVONLY);
if (!(typeSize = H5Tget_size(tid)))
H5_LIBRARY_ERROR(ENVONLY);
+ if (!(nsign = H5Tget_sign(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
/* Build default formats for long long types */
if (!fmt_llong[0]) {
- if (HDsprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH) < 0)
+ if (HDsnprintf(fmt_llong, sizeof(fmt_llong), "%%%sd", H5_PRINTF_LL_WIDTH) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure");
- if (HDsprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH) < 0)
+ if (HDsnprintf(fmt_ullong, sizeof(fmt_ullong), "%%%su", H5_PRINTF_LL_WIDTH) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure");
} /* end if */
@@ -788,27 +798,28 @@ h5str_sprintf
case H5T_STRING:
{
- htri_t is_variable;
- char *tmp_str;
-
- typeSize = 0;
+ htri_t is_variable;
+ char *tmp_str;
if ((is_variable = H5Tis_variable_str(tid)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (is_variable) {
- if (NULL != (tmp_str = *(char **) in_buf))
+ /* cp_vp is the pointer into the struct where a `char*' is stored. So we have
+ * to dereference the pointer to get the `char*' to pass to HDstrlen(). */
+ tmp_str = *(char **)in_buf;
+ if (NULL != tmp_str)
typeSize = HDstrlen(tmp_str);
}
else {
tmp_str = cptr;
}
+ pad = H5Tget_strpad(tid);
/* Check for NULL pointer for string */
if (!tmp_str) {
if (NULL == (this_str = (char *) HDmalloc(5)))
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
-
HDstrncpy(this_str, "NULL", 5);
}
else {
@@ -826,7 +837,6 @@ h5str_sprintf
case H5T_INTEGER:
{
- H5T_sign_t nsign = H5T_SGN_ERROR;
if (H5T_SGN_ERROR == (nsign = H5Tget_sign(tid)))
H5_LIBRARY_ERROR(ENVONLY);
@@ -843,7 +853,7 @@ h5str_sprintf
if (NULL == (this_str = (char *) HDmalloc(7)))
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
- if (HDsprintf(this_str, "%u", tmp_uchar) < 0)
+ if (HDsprintf(this_str, "%hhu", tmp_uchar) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
}
else {
@@ -870,7 +880,7 @@ h5str_sprintf
if (NULL == (this_str = (char *) HDmalloc(9)))
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
- if (HDsprintf(this_str, "%u", tmp_ushort) < 0)
+ if (HDsprintf(this_str, "%hu", tmp_ushort) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
}
else {
@@ -879,7 +889,7 @@ h5str_sprintf
if (NULL == (this_str = (char *) HDmalloc(9)))
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
- if (HDsprintf(this_str, "%d", tmp_short) < 0)
+ if (HDsprintf(this_str, "%hd", tmp_short) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
}
@@ -1057,6 +1067,27 @@ h5str_sprintf
H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type);
switch (ref_type) {
case H5R_OBJECT1:
+ {
+ /* Object references -- show the type and OID of the referenced object. */
+ H5O_info_t oi;
+
+ if((obj = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ H5Oget_info2(obj, &oi, H5O_INFO_BASIC);
+ if(H5Oclose(obj) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (this_str = (char *) HDmalloc(14)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+ if (HDsprintf(this_str, "%u-", (unsigned) oi.type) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ if (!h5str_append(out_str, this_str))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ HDfree(this_str);
+ this_str = NULL;
+
switch (obj_type) {
case H5O_TYPE_GROUP:
if (!h5str_append(out_str, H5_TOOLS_GROUP))
@@ -1079,6 +1110,16 @@ h5str_sprintf
default:
break;
} /* end switch */
+ H5Oclose(obj);
+ h5str_sprint_reference(ENVONLY, out_str, container, ref_vp);
+
+ /* Print OID */
+ if (NULL == (this_str = (char *) HDmalloc(64)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+ if (HDsprintf(this_str, "%lu:"H5_PRINTF_HADDR_FMT" ", oi.fileno, oi.addr) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
break;
case H5R_DATASET_REGION1:
if (!h5str_append(out_str, H5_TOOLS_DATASET))
diff --git a/src/H5private.h b/src/H5private.h
index c39c946..5ab9daf 100644
--- a/src/H5private.h
+++ b/src/H5private.h
@@ -1190,13 +1190,23 @@ typedef off_t h5_stat_size_t;
#define HDrandom() HDrand()
#endif /* HDrandom */
H5_DLL int HDrand(void);
-#elif H5_HAVE_RANDOM
+ #ifndef HDsrandom
+ #define HDsrandom(S) HDsrand(S)
+ #endif /* HDsrandom */
+ H5_DLL void HDsrand(unsigned int seed);
+#elif defined(H5_HAVE_RANDOM)
#ifndef HDrand
#define HDrand() random()
#endif /* HDrand */
#ifndef HDrandom
#define HDrandom() random()
#endif /* HDrandom */
+ #ifndef HDsrand
+ #define HDsrand(S) srandom(S)
+ #endif /* HDsrand */
+ #ifndef HDsrandom
+ #define HDsrandom(S) srandom(S)
+ #endif /* HDsrandom */
#else /* H5_HAVE_RANDOM */
#ifndef HDrand
#define HDrand() rand()
@@ -1204,6 +1214,12 @@ typedef off_t h5_stat_size_t;
#ifndef HDrandom
#define HDrandom() rand()
#endif /* HDrandom */
+ #ifndef HDsrand
+ #define HDsrand(S) srand(S)
+ #endif /* HDsrand */
+ #ifndef HDsrandom
+ #define HDsrandom(S) srand(S)
+ #endif /* HDsrandom */
#endif /* H5_HAVE_RANDOM */
#ifndef HDread
@@ -1324,26 +1340,6 @@ typedef off_t h5_stat_size_t;
#ifndef HDsqrt
#define HDsqrt(X) sqrt(X)
#endif /* HDsqrt */
-#ifdef H5_HAVE_RAND_R
- H5_DLL void HDsrand(unsigned int seed);
- #ifndef HDsrandom
- #define HDsrandom(S) HDsrand(S)
- #endif /* HDsrandom */
-#elif H5_HAVE_RANDOM
- #ifndef HDsrand
- #define HDsrand(S) srandom(S)
- #endif /* HDsrand */
- #ifndef HDsrandom
- #define HDsrandom(S) srandom(S)
- #endif /* HDsrandom */
-#else /* H5_HAVE_RAND_R */
- #ifndef HDsrand
- #define HDsrand(S) srand(S)
- #endif /* HDsrand */
- #ifndef HDsrandom
- #define HDsrandom(S) srand(S)
- #endif /* HDsrandom */
-#endif /* H5_HAVE_RAND_R */
#ifndef HDsscanf
#define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
#endif /* HDsscanf */
diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h
index dde3c15..11ba612 100644
--- a/tools/lib/h5tools.h
+++ b/tools/lib/h5tools.h
@@ -480,10 +480,10 @@ typedef struct h5tool_format_t {
/*used to skip the first set of checks for line length*/
int skip_first;
- /*flag used to hide or show the file number for obj refs*/
+ /*flag used to hide or show the file number for object refs*/
int obj_hidefileno;
- /*string used to format the output for the obje refs*/
+ /*string used to format the output for the object refs*/
const char *obj_format;
/*flag used to hide or show the file number for dataset regions*/
diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c
index 80a442a..f35fdab 100644
--- a/tools/lib/h5tools_str.c
+++ b/tools/lib/h5tools_str.c
@@ -764,7 +764,8 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai
/* cp_vp is the pointer into the struct where a `char*' is stored. So we have
* to dereference the pointer to get the `char*' to pass to HDstrlen(). */
s = *(char **)((void *)cp_vp);
- if(s != NULL) size = HDstrlen(s);
+ if(s != NULL)
+ size = HDstrlen(s);
}
else {
s = cp_vp;
@@ -784,8 +785,9 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai
* threshold is zero then that means it can repeat any number
* of times.
*/
- if(info->str_repeat > 0) while (i + j < size && s[i] == s[i + j])
- j++;
+ if(info->str_repeat > 0)
+ while (i + j < size && s[i] == s[i + j])
+ j++;
/*
* Print the opening quote. If the repeat count is high enough to
@@ -1091,7 +1093,6 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai
h5tools_str_append(str, "NULL");
else {
if (H5Tequal(type, H5T_STD_REF)) {
- char *obj_name = NULL;
H5O_type_t obj_type; /* Object type */
H5R_type_t ref_type; /* Reference type */
const H5R_ref_t *ref_vp = (const H5R_ref_t *)vp;
@@ -1358,7 +1359,7 @@ h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info,
hid_t container, H5R_ref_t *ref_vp)
{
H5TOOLS_ERR_INIT(int, SUCCEED)
- ssize_t buf_size, status;
+ ssize_t buf_size;
H5TOOLS_PUSH_STACK();
H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter");
@@ -1368,11 +1369,11 @@ h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info,
H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "buf_size=%ld", buf_size);
if (buf_size) {
char *file_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1);
- status = H5Rget_file_name(ref_vp, file_name, buf_size + 1);
- file_name[buf_size] = '\0';
- H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "name=%s", file_name);
-
- h5tools_str_append(str, "%s", file_name);
+ if (H5Rget_file_name(ref_vp, file_name, buf_size + 1) >= 0) {
+ file_name[buf_size] = '\0';
+ H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "name=%s", file_name);
+ h5tools_str_append(str, "%s", file_name);
+ }
HDfree(file_name);
}
@@ -1380,11 +1381,11 @@ h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info,
H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "buf_size=%ld", buf_size);
if (buf_size) {
char *obj_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1);
- status = H5Rget_obj_name(ref_vp, H5P_DEFAULT, obj_name, buf_size + 1);
- obj_name[buf_size] = '\0';
- H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "name=%s", obj_name);
-
- h5tools_str_append(str, "%s", obj_name);
+ if (H5Rget_obj_name(ref_vp, H5P_DEFAULT, obj_name, buf_size + 1) >= 0) {
+ obj_name[buf_size] = '\0';
+ H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "name=%s", obj_name);
+ h5tools_str_append(str, "%s", obj_name);
+ }
HDfree(obj_name);
}
@@ -1393,11 +1394,11 @@ h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info,
H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "buf_size=%ld", buf_size);
if (buf_size) {
char *attr_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1);
- status = H5Rget_attr_name(ref_vp, attr_name, buf_size + 1);
- attr_name[buf_size] = '\0';
- H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "name=%s", attr_name);
-
- h5tools_str_append(str, "/%s", attr_name);
+ if (H5Rget_attr_name(ref_vp, attr_name, buf_size + 1) >= 0) {
+ attr_name[buf_size] = '\0';
+ H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "name=%s", attr_name);
+ h5tools_str_append(str, "/%s", attr_name);
+ }
HDfree(attr_name);
}
}
generated by cgit v0.12 at 2024-11-16 10:36:10 (GMT)