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-rw-r--r--MANIFEST58
-rw-r--r--configure.in2
-rw-r--r--src/H5D.c1
-rw-r--r--src/H5Dio.c5
-rw-r--r--src/H5Dmpio.c7
-rw-r--r--src/H5S.c24
-rw-r--r--src/H5Shyper.c2
-rw-r--r--src/H5Smpio.c1
-rw-r--r--src/H5Sprivate.h2
-rw-r--r--testpar/testphdf5.c2
-rw-r--r--testpar/testphdf5.h1
11 files changed, 44 insertions, 61 deletions
diff --git a/MANIFEST b/MANIFEST
index a653da0..f438e52 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -719,8 +719,8 @@
./pablo/PabloHDF_RT.c
./pablo/PabloHDF_SDDF.c
./pablo/PabloHDFff.f
-./pablo/PabloSedscr
./pablo/ProcIDs.h
+./pablo/PabloSedscr
./pablo/ProcTrace.h
./pablo/READ_ME
@@ -1133,37 +1133,35 @@
./tools/h5diff/Dependencies
./tools/h5diff/Makefile.in
./tools/h5diff/h5diff_main.c
-./tools/h5diff/testh5diff_util.c
-./tools/h5diff/testh5diff_main.c
-./tools/h5diff/testh5diff_dset.c
-./tools/h5diff/testh5diff_basic.c
./tools/h5diff/testh5diff_attr.c
+./tools/h5diff/testh5diff_basic.c
+./tools/h5diff/testh5diff_dset.c
+./tools/h5diff/testh5diff_main.c
+./tools/h5diff/testh5diff_util.c
./tools/h5diff/testh5diff.h
./tools/h5diff/testh5diff.sh
+# h5repack sources
./tools/h5repack/Dependencies
./tools/h5repack/Makefile.in
./tools/h5repack/h5repack.sh.in
-./tools/h5repack/h5repack.h
./tools/h5repack/h5repack.c
+./tools/h5repack/h5repack.h
+./tools/h5repack/h5repack_copy.c
+./tools/h5repack/h5repack_filters.c
./tools/h5repack/h5repack_layout.c
./tools/h5repack/h5repack_list.c
-./tools/h5repack/h5repack_filters.c
-./tools/h5repack/h5repack_verify.c
-./tools/h5repack/h5repack_copy.c
-./tools/h5repack/h5repack_refs.c
./tools/h5repack/h5repack_main.c
./tools/h5repack/h5repack_opttable.c
./tools/h5repack/h5repack_parse.c
+./tools/h5repack/h5repack_refs.c
+./tools/h5repack/h5repack_verify.c
./tools/h5repack/testh5repack_attr.c
./tools/h5repack/testh5repack_dset.c
-./tools/h5repack/testh5repack_make.c
./tools/h5repack/testh5repack_main.c
+./tools/h5repack/testh5repack_make.c
./tools/h5repack/testh5repack_util.c
-
-
-
./tools/h5ls/Dependencies
./tools/h5ls/Makefile.in
./tools/h5ls/h5ls.c
@@ -1171,8 +1169,18 @@
./tools/lib/Dependencies
./tools/lib/Makefile.in
+./tools/lib/h5diff.c
+./tools/lib/h5diff.h
+./tools/lib/h5diff_array.c
+./tools/lib/h5diff_attr.c
+./tools/lib/h5diff_dset.c
+./tools/lib/h5diff_util.c
+./tools/lib/h5trav.c
+./tools/lib/h5trav.h
+./tools/lib/h5trav_table.c
./tools/lib/h5tools.c
./tools/lib/h5tools.h
+./tools/lib/h5tools_filters.c
./tools/lib/h5tools_str.c
./tools/lib/h5tools_str.h
./tools/lib/h5tools_utils.c
@@ -1180,16 +1188,6 @@
./tools/lib/h5tools_ref.c
./tools/lib/h5tools_ref.h
./tools/lib/talign.c
-./tools/lib/h5diff.c
-./tools/lib/h5diff_array.c
-./tools/lib/h5diff_attr.c
-./tools/lib/h5diff_dset.c
-./tools/lib/h5diff_util.c
-./tools/lib/h5trav.c
-./tools/lib/h5trav_table.c
-./tools/lib/h5trav.h
-./tools/lib/h5diff.h
-./tools/lib/h5tools_filters.c
./tools/misc/Dependencies
./tools/misc/Makefile.in
@@ -1431,18 +1429,6 @@
./tools/testfiles/tvldtypes4.h5.xml
./tools/testfiles/tvldtypes5.h5.xml
./tools/testfiles/tvlstr.h5.xml
-./tools/testfiles/tname-amp.h5
-./tools/testfiles/tname-apos.h5
-./tools/testfiles/tname-gt.h5
-./tools/testfiles/tname-lt.h5
-./tools/testfiles/tname-quot.h5
-./tools/testfiles/tname-sp.h5
-./tools/testfiles/tnodata.h5
-./tools/testfiles/tref-escapes-at.h5
-./tools/testfiles/tref-escapes.h5
-./tools/testfiles/tref.h5
-./tools/testfiles/tstring-at.h5
-./tools/testfiles/tstring.h5
./tools/testfiles/tempty-dtd.h5.xml
./tools/testfiles/tempty-dtd-uri.h5.xml
./tools/testfiles/tempty-nons.h5.xml
diff --git a/configure.in b/configure.in
index 48cc4a2..9dc25bc 100644
--- a/configure.in
+++ b/configure.in
@@ -1133,7 +1133,7 @@ if test "x$HAVE_SZLIB" = "xyes" -a "x$HAVE_SZLIB_H" = "xyes"; then
dnl Add "szip" to external filter list
if test "X$EXTERNAL_FILTERS" != "X"; then
- EXTERNAL_FILTERS="${EXTERNAL_FILTERS},"
+ EXTERNAL_FILTERS="${EXTERNAL_FILTERS},"
fi
EXTERNAL_FILTERS="${EXTERNAL_FILTERS}szip"
fi
diff --git a/src/H5D.c b/src/H5D.c
index 177e3e1..be85340 100644
--- a/src/H5D.c
+++ b/src/H5D.c
@@ -31,7 +31,6 @@
#include "H5MMprivate.h" /* Memory management */
#include "H5Sprivate.h" /* Dataspaces */
#include "H5Vprivate.h" /* Vectors and arrays */
-#include "H5Zprivate.h"
/*#define H5D_DEBUG*/
diff --git a/src/H5Dio.c b/src/H5Dio.c
index 9fb860e..b7d9580 100644
--- a/src/H5Dio.c
+++ b/src/H5Dio.c
@@ -757,7 +757,7 @@ H5D_read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space,
} /* end switch */
/* Get dataspace functions */
- if (NULL==(sconv=H5S_find(dataset->ent.file,mem_space, file_space, sconv_flags, &use_par_opt_io,&dataset->layout)))
+ if (NULL==(sconv=H5S_find(dataset->ent.file, mem_space, file_space, sconv_flags, &use_par_opt_io, &dataset->layout)))
HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL, "unable to convert from file to memory data space")
#ifdef H5_HAVE_PARALLEL
@@ -1004,7 +1004,7 @@ H5D_write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space,
} /* end switch */
/* Get dataspace functions */
- if (NULL==(sconv=H5S_find(dataset->ent.file,mem_space, file_space, sconv_flags, &use_par_opt_io,&dataset->layout)))
+ if (NULL==(sconv=H5S_find(dataset->ent.file, mem_space, file_space, sconv_flags, &use_par_opt_io, &dataset->layout)))
HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL, "unable to convert from memory to file data space")
#ifdef H5_HAVE_PARALLEL
@@ -1031,7 +1031,6 @@ H5D_write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space,
}
#endif /* H5_HAVE_INSTRUMENTED_LIBRARY */
- /* end Test for collective chunk IO */
/* Don't reset the transfer mode if we can't or won't use it */
if(!use_par_opt_io || !H5T_path_noop(tpath))
H5D_io_assist_mpio(dxpl_id, dxpl_cache, &xfer_mode_changed);
diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c
index ea15076..581a20a 100644
--- a/src/H5Dmpio.c
+++ b/src/H5Dmpio.c
@@ -138,7 +138,7 @@ H5D_mpio_spaces_xfer(H5F_t *f, const H5D_t *dset, size_t elmt_size,
&mft_is_derived )<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't create MPI file type");
-
+ /* Get the base address of the contiguous dataset or the chunk */
if(dset->layout.type == H5D_CONTIGUOUS)
addr = H5D_contig_get_addr(dset) + mpi_file_offset;
else {
@@ -222,7 +222,7 @@ H5D_mpio_spaces_read(H5F_t *f, const H5D_dxpl_cache_t UNUSED *dxpl_cache, hid_t
FUNC_ENTER_NOAPI_NOFUNC(H5D_mpio_spaces_read);
ret_value = H5D_mpio_spaces_xfer(f, dset, elmt_size, file_space,
- mem_space, dxpl_id, buf,store, 0/*read*/);
+ mem_space, dxpl_id, buf, store, 0/*read*/);
FUNC_LEAVE_NOAPI(ret_value);
} /* end H5D_mpio_spaces_read() */
@@ -261,9 +261,8 @@ H5D_mpio_spaces_write(H5F_t *f, const H5D_dxpl_cache_t UNUSED *dxpl_cache, hid_t
/*OKAY: CAST DISCARDS CONST QUALIFIER*/
ret_value = H5D_mpio_spaces_xfer(f, dset, elmt_size, file_space,
- mem_space, dxpl_id, (void*)buf, store,1/*write*/);
+ mem_space, dxpl_id, (void*)buf, store, 1/*write*/);
FUNC_LEAVE_NOAPI(ret_value);
} /* end H5D_mpio_spaces_write() */
-
#endif /* H5_HAVE_PARALLEL */
diff --git a/src/H5S.c b/src/H5S.c
index 70e8b55..3a8a799 100644
--- a/src/H5S.c
+++ b/src/H5S.c
@@ -23,14 +23,14 @@
#define PABLO_MASK H5S_mask
#define _H5S_IN_H5S_C
-#include "H5private.h" /* Generic Functions */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5Fpkg.h" /* Dataspace functions */
-#include "H5FLprivate.h" /* Free Lists */
-#include "H5Iprivate.h" /* ID Functions */
-#include "H5MMprivate.h" /* Memory Management functions */
-#include "H5Oprivate.h" /* object headers */
-#include "H5Spkg.h" /* Dataspace functions */
+#include "H5private.h" /* Generic Functions */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5Fpkg.h" /* File access */
+#include "H5FLprivate.h" /* Free lists */
+#include "H5Iprivate.h" /* IDs */
+#include "H5MMprivate.h" /* Memory management */
+#include "H5Oprivate.h" /* Object headers */
+#include "H5Spkg.h" /* Dataspaces */
/* Local macro definitions */
#define H5S_ENCODE_VERSION 0
@@ -1375,7 +1375,7 @@ H5S_set_extent_simple (H5S_t *space, unsigned rank, const hsize_t *dims,
HDmemcpy(space->extent.max, max, sizeof(hsize_t) * rank);
} /* end if */
else {
- space->extent.max = NULL;
+ space->extent.max = NULL;
}
}
@@ -1807,7 +1807,7 @@ done:
*
*-------------------------------------------------------------------------
*/
-herr_t
+static herr_t
H5S_encode(H5S_t *obj, unsigned char *buf, size_t *nalloc)
{
size_t extent_size;
@@ -1928,7 +1928,7 @@ done:
*
*-------------------------------------------------------------------------
*/
-H5S_t*
+static H5S_t*
H5S_decode(const unsigned char *buf)
{
H5S_t *ds;
@@ -2198,7 +2198,7 @@ done:
* by H5Sset_extent_simple() ). Helps avoid write errors.
*
* Return: TRUE if dataspace has extent set
- * FALSE if dataspace's extent is uninitialized
+ * FALSE if dataspace's extent is uninitialized
*
* Programmer: James Laird
*
diff --git a/src/H5Shyper.c b/src/H5Shyper.c
index 2ee7356..2bc8dcc 100644
--- a/src/H5Shyper.c
+++ b/src/H5Shyper.c
@@ -729,7 +729,7 @@ H5S_hyper_iter_next(H5S_sel_iter_t *iter, size_t nelem)
/* Increment absolute position */
if(curr_dim==fast_dim) {
size_t actual_elem; /* Actual # of elements advanced on each iteration through loop */
- hsize_t span_elem; /* Number of elements left in a span */
+ hsize_t span_elem; /* Number of elements left in a span */
/* Compute the number of elements left in block */
span_elem=(curr_span->high-abs_arr[curr_dim])+1;
diff --git a/src/H5Smpio.c b/src/H5Smpio.c
index 6c7ddd1..b04faeb 100644
--- a/src/H5Smpio.c
+++ b/src/H5Smpio.c
@@ -743,5 +743,4 @@ H5S_mpio_opt_possible( const H5F_t *file, const H5S_t *mem_space, const H5S_t *f
done:
FUNC_LEAVE_NOAPI(ret_value);
} /* H5S_mpio_opt_possible() */
-
#endif /* H5_HAVE_PARALLEL */
diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h
index 732a4d2..efa9b30 100644
--- a/src/H5Sprivate.h
+++ b/src/H5Sprivate.h
@@ -211,10 +211,10 @@ H5_DLL H5S_conv_t *H5S_find(const H5F_t *file,const H5S_t *mem_space, const H5S_
H5_DLL H5S_class_t H5S_get_simple_extent_type(const H5S_t *ds);
H5_DLL hssize_t H5S_get_simple_extent_npoints(const H5S_t *ds);
H5_DLL hsize_t H5S_get_npoints_max(const H5S_t *ds);
+H5_DLL hbool_t H5S_has_extent(const H5S_t *ds);
H5_DLL int H5S_get_simple_extent_ndims(const H5S_t *ds);
H5_DLL int H5S_get_simple_extent_dims(const H5S_t *ds, hsize_t dims[]/*out*/,
hsize_t max_dims[]/*out*/);
-H5_DLL hbool_t H5S_has_extent(const H5S_t *ds);
H5_DLL herr_t H5S_modify(struct H5G_entry_t *ent, const H5S_t *space,
hbool_t update_time, hid_t dxpl_id);
H5_DLL herr_t H5S_append(H5F_t *f, hid_t dxpl_id, struct H5O_t *oh, const H5S_t *ds);
diff --git a/testpar/testphdf5.c b/testpar/testphdf5.c
index 26642bf..ba6a075 100644
--- a/testpar/testphdf5.c
+++ b/testpar/testphdf5.c
@@ -469,7 +469,6 @@ int main(int argc, char **argv)
AddTest("fillvalue", dataset_fillvalue, NULL,
"dataset fill value", filenames[8]);
-
AddTest("coll. chunked 1", coll_chunk1,NULL,
"simple collective chunk io",filenames[10]);
AddTest("coll. chunked 2", coll_chunk2,NULL,
@@ -478,6 +477,7 @@ int main(int argc, char **argv)
"multi-chunk collective chunk io",filenames[12]);
AddTest("coll. chunked 4", coll_chunk4,NULL,
"collective to independent chunk io",filenames[13]);
+
/* Display testing information */
TestInfo(argv[0]);
diff --git a/testpar/testphdf5.h b/testpar/testphdf5.h
index 379fd1e..a608035 100644
--- a/testpar/testphdf5.h
+++ b/testpar/testphdf5.h
@@ -127,6 +127,7 @@
#define BYROW_CONT 1
#define BYROW_DISCONT 2
#define DSET_COLLECTIVE_CHUNK_NAME "coll_chunk_name"
+
/* type definitions */
typedef struct H5Ptest_param_t /* holds extra test parameters */
{
generated by cgit v0.12 at 2024-07-22 01:22:39 (GMT)