diff options
| -rw-r--r-- | tools/h5repack/h5repack.c | 6 | ||||
| -rw-r--r-- | tools/h5repack/h5repack.h | 1 | ||||
| -rw-r--r-- | tools/h5repack/h5repack.sh.in | 5 | ||||
| -rw-r--r-- | tools/h5repack/h5repack_copy.c | 152 | ||||
| -rw-r--r-- | tools/h5repack/h5repack_main.c | 34 | ||||
| -rw-r--r-- | tools/h5repack/h5repacktst.c | 32 |
6 files changed, 110 insertions, 120 deletions
diff --git a/tools/h5repack/h5repack.c b/tools/h5repack/h5repack.c index 28d66c5..9778fdd 100644 --- a/tools/h5repack/h5repack.c +++ b/tools/h5repack/h5repack.c @@ -87,10 +87,12 @@ int h5repack(const char* infile, */ int -h5repack_init(pack_opt_t *options, int verbose, H5F_file_space_type_t strategy, hsize_t threshold) +h5repack_init(pack_opt_t *options, int verbose, H5F_file_space_type_t strategy, + hsize_t threshold) { int k, n; - HDmemset(options,0,sizeof(pack_opt_t)); + + HDmemset(options, 0, sizeof(pack_opt_t)); options->min_comp = 1024; options->verbose = verbose; diff --git a/tools/h5repack/h5repack.h b/tools/h5repack/h5repack.h index 6415d3a..3907178 100644 --- a/tools/h5repack/h5repack.h +++ b/tools/h5repack/h5repack.h @@ -111,6 +111,7 @@ typedef struct { datatype, fill value, filter pipleline, attribute */ const char *ublock_filename; /* user block file name */ hsize_t ublock_size; /* user block size */ + hsize_t meta_block_size; /* metadata aggregation block size (for H5Pset_meta_block_size) */ hsize_t threshold; /* alignment threshold for H5Pset_alignment */ hsize_t alignment ; /* alignment for H5Pset_alignment */ H5F_file_space_type_t fs_strategy; /* File space handling strategy */ diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in index c1cbba1..2271f34 100644 --- a/tools/h5repack/h5repack.sh.in +++ b/tools/h5repack/h5repack.sh.in @@ -801,7 +801,6 @@ TOOLTEST h5repack_refs.h5 # the references in attribute of compund or vlen datatype TOOLTEST h5repack_attr_refs.h5 - # Add test for memory leak in attirbute. This test is verified by CTEST. # 1. leak from vlen string # 2. leak from compound type without reference member @@ -809,6 +808,10 @@ TOOLTEST h5repack_attr_refs.h5 # Note: this test is experimental for sharing test file among tools TOOLTEST h5diff_attr1.h5 +# tests for metadata block size option ('-M') +TOOLTEST h5diff_layout.h5 -M 8192 +TOOLTEST h5diff_layout.h5 --metadata_block_size=8192 + if test $nerrors -eq 0 ; then echo "All $TESTNAME tests passed." exit $EXIT_SUCCESS diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c index 55cf932..15df639 100644 --- a/tools/h5repack/h5repack_copy.c +++ b/tools/h5repack/h5repack_copy.c @@ -132,23 +132,23 @@ int copy_objects(const char* fnamein, goto out; } - if(!options->fs_strategy) - { - if(H5Pget_file_space(fcpl_in, &options->fs_strategy, NULL) < 0) - { - error_msg("failed to retrieve file space strategy\n"); - goto out; - } - } - - if(!options->fs_threshold) - { - if(H5Pget_file_space(fcpl_in, NULL, &options->fs_threshold) < 0) - { - error_msg("failed to retrieve file space threshold\n"); - goto out; - } - } + if(!options->fs_strategy) + { + if(H5Pget_file_space(fcpl_in, &options->fs_strategy, NULL) < 0) + { + error_msg("failed to retrieve file space strategy\n"); + goto out; + } + } + + if(!options->fs_threshold) + { + if(H5Pget_file_space(fcpl_in, NULL, &options->fs_threshold) < 0) + { + error_msg("failed to retrieve file space threshold\n"); + goto out; + } + } if(H5Pclose(fcpl_in) < 0) { @@ -254,135 +254,113 @@ int copy_objects(const char* fnamein, } /* end if */ } /* end if */ } /* end if */ - - - - #if defined (H5REPACK_DEBUG_USER_BLOCK) - print_user_block(fnamein,fidin); + print_user_block(fnamein, fidin); #endif - /*------------------------------------------------------------------------- * set the new user userblock options in the FCPL (before H5Fcreate ) *------------------------------------------------------------------------- */ - if ( options->ublock_size > 0 ) { /* either use the FCPL already created or create a new one */ - if(fcpl != H5P_DEFAULT) + if(fcpl == H5P_DEFAULT) { - /* set user block size */ - if(H5Pset_userblock(fcpl, options->ublock_size) < 0) - { - error_msg("failed to set userblock size\n"); - goto out; - } - - } - - else - { - /* create a file creation property list */ if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) { error_msg("fail to create a file creation property list\n"); goto out; } - - /* set user block size */ - if(H5Pset_userblock(fcpl, options->ublock_size) < 0) - { - error_msg("failed to set userblock size\n"); - goto out; - } - } - - + /* set user block size */ + if(H5Pset_userblock(fcpl, options->ublock_size) < 0) + { + error_msg("failed to set userblock size\n"); + goto out; + } } - /*------------------------------------------------------------------------- * set alignment options *------------------------------------------------------------------------- */ - - if ( options->alignment > 0 ) { /* either use the FAPL already created or create a new one */ - if (fapl != H5P_DEFAULT) + if (fapl == H5P_DEFAULT) { - - if (H5Pset_alignment(fapl, options->threshold, options->alignment) < 0) + /* create a file access property list */ + if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) { - error_msg("failed to set alignment\n"); + error_msg("Could not create file access property list\n"); goto out; } - } - else + if (H5Pset_alignment(fapl, options->threshold, options->alignment) < 0) { + error_msg("failed to set alignment\n"); + goto out; + } + } + /*------------------------------------------------------------------------- + * set metadata block size option + *------------------------------------------------------------------------- + */ + if ( options->meta_block_size > 0 ) + { + /* either use the FAPL already created or create a new one */ + if (fapl == H5P_DEFAULT) + { /* create a file access property list */ if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) { error_msg("Could not create file access property list\n"); goto out; } - - if (H5Pset_alignment(fapl, options->threshold, options->alignment) < 0) - { - error_msg("failed to set alignment\n"); - goto out; - } - } + if (H5Pset_meta_block_size(fapl, options->meta_block_size) < 0) + { + error_msg("failed to set metadata block size\n"); + goto out; + } } + /*------------------------------------------------------------------------- + * set free-space strategy options + *------------------------------------------------------------------------- + */ + /* either use the FCPL already created or create a new one */ - if(fcpl != H5P_DEFAULT) + if(fcpl == H5P_DEFAULT) { - /* set file space strategy and free space threshold */ - if(H5Pset_file_space(fcpl, options->fs_strategy, options->fs_threshold) < 0) - { - error_msg("failed to set file space strategy & threshold\n"); - goto out; - } + /* create a file creation property list */ + if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) + { + error_msg("fail to create a file creation property list\n"); + goto out; + } } - else + + /* set file space strategy and free space threshold */ + if(H5Pset_file_space(fcpl, options->fs_strategy, options->fs_threshold) < 0) { - /* create a file creation property list */ - if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) - { - error_msg("fail to create a file creation property list\n"); - goto out; - } - - /* set file space strategy and free space threshold */ - if(H5Pset_file_space(fcpl, options->fs_strategy, options->fs_threshold) < 0) - { - error_msg("failed to set file space strategy & threshold \n"); - goto out; - } + error_msg("failed to set file space strategy & threshold \n"); + goto out; } /*------------------------------------------------------------------------- * create the output file *------------------------------------------------------------------------- */ - - if(options->verbose) printf("Making file <%s>...\n",fnameout); - if((fidout = H5Fcreate(fnameout,H5F_ACC_TRUNC, fcpl, fapl)) < 0) { error_msg("<%s>: Could not create file\n", fnameout ); diff --git a/tools/h5repack/h5repack_main.c b/tools/h5repack/h5repack_main.c index e1697ab..6004084 100644 --- a/tools/h5repack/h5repack_main.c +++ b/tools/h5repack/h5repack_main.c @@ -35,7 +35,7 @@ const char *outfile = NULL; * Command-line options: The user can specify short or long-named * parameters. */ -static const char *s_opts = "hVvf:l:m:e:nLc:d:s:u:b:t:a:i:o:S:T:"; +static const char *s_opts = "hVvf:l:m:e:nLc:d:s:u:b:M:t:a:i:o:S:T:"; static struct long_options l_opts[] = { { "help", no_arg, 'h' }, { "version", no_arg, 'V' }, @@ -51,6 +51,7 @@ static struct long_options l_opts[] = { { "ssize", require_arg, 's' }, { "ublock", require_arg, 'u' }, { "block", require_arg, 'b' }, + { "metadata_block_size", require_arg, 'M' }, { "threshold", require_arg, 't' }, { "alignment", require_arg, 'a' }, { "infile", require_arg, 'i' }, /* -i for backward compability */ @@ -78,24 +79,6 @@ static struct long_options l_opts[] = { * * Comments: * - * Modifications: - * July 2004: Introduced the extra EC or NN option for SZIP - * October 2006: Added a new switch -n, that allows to write the dataset - * using a native type. The default to write is the file type. - * - * Modification: - * Peter Cao, June 13, 2007 - * Add "-L, --latest" option to pack a file with the latest file format - * PVN, November 19, 2007 - * adopted the syntax h5repack [OPTIONS] file1 file2 - * PVN, November 28, 2007 - * added support for multiple global filters - * PVN, May 16, 2008 - * added backward compatibility for -i infile -o outfile - * PVN, August 20, 2008 - * add a user block to repacked file (switches -u -b) - * PVN, August 28, 2008 - * add options to set alignment (H5Pset_alignment) (switches -t -a) *------------------------------------------------------------------------- */ int main(int argc, const char **argv) @@ -115,7 +98,7 @@ int main(int argc, const char **argv) HDexit(EXIT_FAILURE); /* initialize options */ - h5repack_init(&options, 0, 0, (hsize_t)0); + h5repack_init(&options, 0, H5F_FILE_SPACE_DEFAULT, (hsize_t)0); parse_command_line(argc, argv, &options); @@ -187,6 +170,7 @@ static void usage(const char *prog) printf(" -e E, --file=E Name of file E with the -f and -l options\n"); printf(" -u U, --ublock=U Name of file U with user block data to be added\n"); printf(" -b B, --block=B Size of user block to be added\n"); + printf(" -M A, --metadata_block_size=A Metadata block size for H5Pset_meta_block_size\n"); printf(" -t T, --threshold=T Threshold value for H5Pset_alignment\n"); printf(" -a A, --alignment=A Alignment value for H5Pset_alignment\n"); printf(" -f FILT, --filter=FILT Filter type\n"); @@ -428,7 +412,6 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options) break; - case 'u': options->ublock_filename = opt_arg; @@ -439,6 +422,11 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options) options->ublock_size = (hsize_t)HDatol( opt_arg ); break; + case 'M': + + options->meta_block_size = (hsize_t)HDatol( opt_arg ); + break; + case 't': options->threshold = (hsize_t)HDatol( opt_arg ); @@ -455,7 +443,7 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options) break; case 'S': - { + { char strategy[MAX_NC_NAME]; HDstrcpy(strategy, opt_arg); @@ -472,7 +460,7 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options) HDexit(EXIT_FAILURE); } break; - } + } case 'T': diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c index 17a6190..5d72ce4 100644 --- a/tools/h5repack/h5repacktst.c +++ b/tools/h5repack/h5repacktst.c @@ -78,7 +78,6 @@ #define FNAME17OUT "h5repack_named_dtypes_out.h5" #define FNAME18 "h5repack_layout2.h5" -#define FNAME18OUT "h5repack_layout2_out.h5" #define FNAME_UB "ublock.bin" @@ -1561,6 +1560,25 @@ int main (void) PASSED(); /*------------------------------------------------------------------------- + * test --metadata_block_size option + *------------------------------------------------------------------------- + */ + TESTING(" metadata block size option"); + if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + GOERROR; + pack_options.meta_block_size = 8192; + if(h5repack(FNAME1, FNAME1OUT, &pack_options) < 0) + GOERROR; + if(h5diff(FNAME1, FNAME1OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if(h5repack_verify(FNAME1, FNAME1OUT, &pack_options) <= 0) + GOERROR; + if(h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); + + + /*------------------------------------------------------------------------- * clean temporary test files *------------------------------------------------------------------------- */ @@ -3253,7 +3271,7 @@ make_userblock(void) /* Initialize userblock data */ for(u = 0; u < USERBLOCK_SIZE; u++) - ub[u] = 'a' + (u % 26); + ub[u] = 'a' + (char)(u % 26); /* Re-open HDF5 file, as "plain" file */ if((fd = HDopen(FNAME16, O_WRONLY, 0644)) < 0) @@ -3366,7 +3384,7 @@ make_userblock_file(void) /* initialize userblock data */ for(u = 0; u < USERBLOCK_SIZE; u++) - ub[u] = 'a' + (u % 26); + ub[u] = 'a' + (char)(u % 26); /* open file */ if((fd = HDopen(FNAME_UB,O_WRONLY|O_CREAT|O_TRUNC, 0644 )) < 0) @@ -3842,7 +3860,7 @@ int write_dset_in(hid_t loc_id, int l; buf52[i][j].p = malloc((i + 1) * sizeof(int)); - buf52[i][j].len = i + 1; + buf52[i][j].len = (size_t)(i + 1); for(l = 0; l < i + 1; l++) { if(make_diffs) @@ -4063,7 +4081,7 @@ int write_dset_in(hid_t loc_id, int l; buf53[i][j][k].p = malloc((i + 1) * sizeof(int)); - buf53[i][j][k].len = i + 1; + buf53[i][j][k].len = (size_t)(i + 1); for(l = 0; l < i + 1; l++) { if(make_diffs) @@ -4854,7 +4872,7 @@ int write_attr_in(hid_t loc_id, { int l; buf52[i][j].p = malloc((i + 1) * sizeof(int)); - buf52[i][j].len = i + 1; + buf52[i][j].len = (size_t)(i + 1); for (l = 0; l < i + 1; l++) if (make_diffs)((int *)buf52[i][j].p)[l] = 0; else ((int *)buf52[i][j].p)[l] = n++; @@ -5320,7 +5338,7 @@ int write_attr_in(hid_t loc_id, { int l; buf53[i][j][k].p = malloc((i + 1) * sizeof(int)); - buf53[i][j][k].len = i + 1; + buf53[i][j][k].len = (size_t)i + 1; for (l = 0; l < i + 1; l++) if (make_diffs) { |