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-rw-r--r--java/src/jni/exceptionImp.c14
-rw-r--r--java/src/jni/h5Constants.c2
-rw-r--r--java/src/jni/h5Imp.c2
-rw-r--r--java/src/jni/h5aImp.c80
-rw-r--r--java/src/jni/h5dImp.c84
-rw-r--r--java/src/jni/h5eImp.c8
-rw-r--r--java/src/jni/h5fImp.c26
-rw-r--r--java/src/jni/h5iImp.c10
-rw-r--r--java/src/jni/h5jni.h4
-rw-r--r--java/src/jni/h5lImp.c26
-rw-r--r--java/src/jni/h5oImp.c26
-rw-r--r--java/src/jni/h5pDAPLImp.c4
-rw-r--r--java/src/jni/h5pDCPLImp.c54
-rw-r--r--java/src/jni/h5pDXPLImp.c12
-rw-r--r--java/src/jni/h5pFAPLImp.c110
-rw-r--r--java/src/jni/h5pFCPLImp.c8
-rw-r--r--java/src/jni/h5pLAPLImp.c4
-rw-r--r--java/src/jni/h5pOCPLImp.c8
-rw-r--r--java/src/jni/h5plImp.c4
-rw-r--r--java/src/jni/h5rImp.c70
-rw-r--r--java/src/jni/h5sImp.c116
-rw-r--r--java/src/jni/h5tImp.c20
-rw-r--r--java/src/jni/h5util.c581
-rw-r--r--java/src/jni/h5vlImp.c4
24 files changed, 638 insertions, 639 deletions
diff --git a/java/src/jni/exceptionImp.c b/java/src/jni/exceptionImp.c
index 464f457..acc7a5c 100644
--- a/java/src/jni/exceptionImp.c
+++ b/java/src/jni/exceptionImp.c
@@ -73,17 +73,17 @@ typedef struct H5E_num_t {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
\
if (NULL == (jm = ENVPTR->GetMethodID(ENVONLY, jc, "<init>", "(Ljava/lang/String;)V"))) { \
- HDprintf("THROWEXCEPTION FATAL ERROR: GetMethodID failed\n"); \
+ printf("THROWEXCEPTION FATAL ERROR: GetMethodID failed\n"); \
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
} \
\
if (NULL == (ex = ENVPTR->NewObjectA(ENVONLY, jc, jm, (jvalue *)(args)))) { \
- HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Creation failed\n", (className)); \
+ printf("THROWEXCEPTION FATAL ERROR: Class %s: Creation failed\n", (className)); \
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
} \
\
if (ENVPTR->Throw(ENVONLY, (jthrowable)ex) < 0) { \
- HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Throw failed\n", (className)); \
+ printf("THROWEXCEPTION FATAL ERROR: Class %s: Throw failed\n", (className)); \
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
} \
}
@@ -168,9 +168,9 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0(JNIEnv *env, j
else {
PIN_JAVA_STRING(ENVONLY, file_name, file, NULL, "printStackTrace0: file name not pinned");
- if ((stream = HDfopen(file, "a+"))) {
+ if ((stream = fopen(file, "a+"))) {
H5Eprint2(H5E_DEFAULT, stream);
- HDfclose(stream);
+ fclose(stream);
}
}
@@ -403,7 +403,7 @@ h5libraryError(JNIEnv *env)
goto done;
if (msg_size > 0) {
- if (NULL == (msg_str = (char *)HDcalloc((size_t)msg_size + 1, sizeof(char))))
+ if (NULL == (msg_str = (char *)calloc((size_t)msg_size + 1, sizeof(char))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5libraryerror: failed to allocate buffer for error message");
if ((msg_size = H5Eget_msg(min_num, &error_msg_type, msg_str, (size_t)msg_size + 1)) < 0)
@@ -428,7 +428,7 @@ h5libraryError(JNIEnv *env)
done:
if (msg_str)
- HDfree(msg_str);
+ free(msg_str);
return retVal;
} /* end h5libraryError() */
diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c
index 63b82ea..e031db6 100644
--- a/java/src/jni/h5Constants.c
+++ b/java/src/jni/h5Constants.c
@@ -2030,7 +2030,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5O_1TOKEN_1UNDEF(JNIEnv *env, jclass cls)
H5O_token_t undef_token = H5O_TOKEN_UNDEF;
/* TODO: Can be optimized by keeping a global reference to the undefined token class */
- return create_H5O_token_t(env, &undef_token, FALSE);
+ return create_H5O_token_t(env, &undef_token, false);
}
JNIEXPORT jlong JNICALL
diff --git a/java/src/jni/h5Imp.c b/java/src/jni/h5Imp.c
index 433c50d..8fdf051 100644
--- a/java/src/jni/h5Imp.c
+++ b/java/src/jni/h5Imp.c
@@ -191,7 +191,7 @@ done:
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe(JNIEnv *env, jclass clss)
{
- hbool_t is_ts = false;
+ bool is_ts = false;
UNUSED(clss);
diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c
index a8041a6..2e985e7 100644
--- a/java/src/jni/h5aImp.c
+++ b/java/src/jni/h5aImp.c
@@ -181,7 +181,7 @@ Java_hdf_hdf5lib_H5_H5Aread(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_t
if (!(typeSize = H5Tget_size(mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (readBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ if (NULL == (readBuf = calloc((size_t)vl_array_len, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread: failed to allocate raw VL read buffer");
}
else {
@@ -218,7 +218,7 @@ done:
}
if (vl_data_class) {
- HDfree(readBuf);
+ free(readBuf);
}
else {
if (isCriticalPinning) {
@@ -270,7 +270,7 @@ Java_hdf_hdf5lib_H5_H5Awrite(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_
if (!(typeSize = H5Tget_size(mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (writeBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ if (NULL == (writeBuf = calloc((size_t)vl_array_len, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Awrite: failed to allocate raw VL write buffer");
}
else {
@@ -304,7 +304,7 @@ done:
}
if (vl_data_class) {
- HDfree(writeBuf);
+ free(writeBuf);
}
else {
if (isCriticalPinning) {
@@ -993,17 +993,17 @@ Java_hdf_hdf5lib_H5_H5Aread_1string(JNIEnv *env, jclass clss, jlong attr_id, jlo
if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (cstr = (char *)HDmalloc(str_len + 1)))
+ if (NULL == (cstr = (char *)malloc(str_len + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_string: memory allocation failed");
- if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len)))
+ if (NULL == (c_buf = (char *)malloc((size_t)n * str_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_string: memory allocation failed");
if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, c_buf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
for (i = 0, pos = 0; i < n; i++) {
- HDmemcpy(cstr, c_buf + pos, str_len);
+ memcpy(cstr, c_buf + pos, str_len);
cstr[str_len] = '\0';
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) {
@@ -1022,9 +1022,9 @@ Java_hdf_hdf5lib_H5_H5Aread_1string(JNIEnv *env, jclass clss, jlong attr_id, jlo
done:
if (c_buf)
- HDfree(c_buf);
+ free(c_buf);
if (cstr)
- HDfree(cstr);
+ free(cstr);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1string */
@@ -1058,7 +1058,7 @@ Java_hdf_hdf5lib_H5_H5Awrite_1string(JNIEnv *env, jclass clss, jlong attr_id, jl
if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len)))
+ if (NULL == (c_buf = (char *)malloc((size_t)n * str_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Awrite_string: memory allocation failed");
for (i = 0; i < (size_t)n; i++) {
@@ -1068,7 +1068,7 @@ Java_hdf_hdf5lib_H5_H5Awrite_1string(JNIEnv *env, jclass clss, jlong attr_id, jl
/*
* If the string object was NULL, skip it.
*/
- HDmemset(&c_buf[i * str_len], 0, str_len);
+ memset(&c_buf[i * str_len], 0, str_len);
continue;
}
@@ -1079,7 +1079,7 @@ Java_hdf_hdf5lib_H5_H5Awrite_1string(JNIEnv *env, jclass clss, jlong attr_id, jl
PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5Awrite_string: string not pinned");
- HDstrncpy(&c_buf[i * str_len], utf8, str_len);
+ strncpy(&c_buf[i * str_len], utf8, str_len);
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
utf8 = NULL;
@@ -1094,7 +1094,7 @@ done:
if (utf8)
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
if (c_buf)
- HDfree(c_buf);
+ free(c_buf);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1string */
@@ -1133,7 +1133,7 @@ Java_hdf_hdf5lib_H5_H5AreadVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem
if (!(typeSize = H5Tget_size(mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (readBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ if (NULL == (readBuf = calloc((size_t)vl_array_len, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread: failed to allocate raw VL read buffer");
if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, (void *)readBuf)) < 0)
@@ -1157,9 +1157,9 @@ done:
}
if (is_variable) {
for (size_t i = 0; i < (size_t)vl_array_len; i++)
- HDfree(((char **)readBuf)[i]);
+ free(((char **)readBuf)[i]);
}
- HDfree(readBuf);
+ free(readBuf);
}
return (jint)status;
@@ -1202,7 +1202,7 @@ Java_hdf_hdf5lib_H5_H5AwriteVL(JNIEnv *env, jclass clss, jlong attr_id, jlong me
if (!(typeSize = H5Tget_size(mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (writeBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ if (NULL == (writeBuf = calloc((size_t)vl_array_len, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Awrite: failed to allocate raw VL write buffer");
if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
@@ -1224,10 +1224,10 @@ done:
}
if (is_variable) {
for (size_t i = 0; i < (size_t)vl_array_len; i++)
- HDfree(((char **)writeBuf)[i]);
+ free(((char **)writeBuf)[i]);
}
- HDfree(writeBuf);
+ free(writeBuf);
}
return (jint)status;
@@ -1323,7 +1323,7 @@ H5AreadVL_str(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadVL_str: buf length < 0");
}
- if (NULL == (strs = (char **)HDcalloc((size_t)n, sizeof(char *))))
+ if (NULL == (strs = (char **)calloc((size_t)n, sizeof(char *))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"H5AreadVL_str: failed to allocate variable length string read buffer");
@@ -1356,7 +1356,7 @@ done:
H5free_memory(strs[i]);
}
- HDfree(strs);
+ free(strs);
}
return status;
@@ -1381,7 +1381,7 @@ H5AreadVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
void *readBuf = NULL;
herr_t status = FAIL;
- HDmemset(&h5str, 0, sizeof(h5str_t));
+ memset(&h5str, 0, sizeof(h5str_t));
/* Get size of string array */
if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
@@ -1396,7 +1396,7 @@ H5AreadVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
if (!(typeSize = H5Tget_size(tid)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (readBuf = HDcalloc((size_t)n, typeSize)))
+ if (NULL == (readBuf = calloc((size_t)n, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate read buffer");
if ((status = H5Aread(aid, tid, readBuf)) < 0)
@@ -1429,7 +1429,7 @@ done:
h5str_free(&h5str);
if (readBuf) {
H5Treclaim(tid, sid, H5P_DEFAULT, readBuf);
- HDfree(readBuf);
+ free(readBuf);
}
if (sid >= 0)
H5Sclose(sid);
@@ -1528,7 +1528,7 @@ H5AwriteVL_str(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AwriteVL_str: buf length < 0");
}
- if (NULL == (writeBuf = (char **)HDcalloc((size_t)size + 1, sizeof(char *))))
+ if (NULL == (writeBuf = (char **)calloc((size_t)size + 1, sizeof(char *))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"H5AwriteVL_str: failed to allocate variable length string write buffer");
@@ -1550,10 +1550,10 @@ H5AwriteVL_str(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5AwriteVL_str: string not pinned");
- if (NULL == (writeBuf[i] = (char *)HDmalloc((size_t)length + 1)))
+ if (NULL == (writeBuf[i] = (char *)malloc((size_t)length + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate string buffer");
- HDstrncpy(writeBuf[i], utf8, (size_t)length + 1);
+ strncpy(writeBuf[i], utf8, (size_t)length + 1);
writeBuf[i][length] = '\0';
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
@@ -1571,10 +1571,10 @@ done:
if (writeBuf) {
for (i = 0; i < size; i++) {
if (writeBuf[i])
- HDfree(writeBuf[i]);
+ free(writeBuf[i]);
}
- HDfree(writeBuf);
+ free(writeBuf);
}
return status;
@@ -1610,7 +1610,7 @@ H5AwriteVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
if (!(typeSize = H5Tget_size(tid)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize)))
+ if (NULL == (writeBuf = calloc((size_t)n, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer");
/*
@@ -1626,7 +1626,7 @@ H5AwriteVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
/*
* If the string object was NULL, skip it.
*/
- HDmemset(&(((char *)writeBuf)[i * typeSize]), 0, typeSize);
+ memset(&(((char *)writeBuf)[i * typeSize]), 0, typeSize);
continue;
}
@@ -1646,7 +1646,7 @@ H5AwriteVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
if (!h5str_convert(ENVONLY, &utf8_copy, aid, tid, &(((char *)writeBuf)[i * typeSize]), 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- HDfree(utf8_copy);
+ free(utf8_copy);
UNPIN_JAVA_STRING(ENVONLY, jstr, utf8);
utf8 = NULL;
@@ -1662,7 +1662,7 @@ done:
UNPIN_JAVA_STRING(ENVONLY, jstr, utf8);
if (writeBuf) {
H5Treclaim(tid, sid, H5P_DEFAULT, writeBuf);
- HDfree(writeBuf);
+ free(writeBuf);
}
if (sid >= 0)
H5Sclose(sid);
@@ -1687,14 +1687,14 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref(JNIEnv *env, jclass clss, jlong attr_id, j
UNUSED(clss);
- HDmemset(&h5str, 0, sizeof(h5str_t));
+ memset(&h5str, 0, sizeof(h5str_t));
if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_reg_ref: buf length < 0");
}
- if (NULL == (ref_data = (H5R_ref_t *)HDcalloc(1, (size_t)n * sizeof(H5R_ref_t))))
+ if (NULL == (ref_data = (H5R_ref_t *)calloc(1, (size_t)n * sizeof(H5R_ref_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate read buffer");
if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, ref_data)) < 0)
@@ -1724,7 +1724,7 @@ done:
if (h5str.s)
h5str_free(&h5str);
if (ref_data)
- HDfree(ref_data);
+ free(ref_data);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref */
@@ -1784,7 +1784,7 @@ Java_hdf_hdf5lib_H5_H5Aget_1name(JNIEnv *env, jclass clss, jlong attr_id)
if ((buf_size = H5Aget_name((hid_t)attr_id, 0, NULL)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (attrName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (attrName = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aget_name: failed to allocate attribute name buffer");
if (H5Aget_name((hid_t)attr_id, (size_t)buf_size + 1, attrName) < 0)
@@ -1796,7 +1796,7 @@ Java_hdf_hdf5lib_H5_H5Aget_1name(JNIEnv *env, jclass clss, jlong attr_id)
done:
if (attrName)
- HDfree(attrName);
+ free(attrName);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1name */
@@ -2140,7 +2140,7 @@ Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id
(hsize_t)n, (char *)NULL, (size_t)0, (hid_t)lapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (attrName = (char *)HDmalloc(sizeof(char) * (size_t)status_size + 1)))
+ if (NULL == (attrName = (char *)malloc(sizeof(char) * (size_t)status_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aget_name_by_idx: failed to allocate buffer for attribute name");
if ((H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t)n,
@@ -2153,7 +2153,7 @@ Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id
done:
if (attrName)
- HDfree(attrName);
+ free(attrName);
if (objName)
UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c
index de7fb21..3453bde 100644
--- a/java/src/jni/h5dImp.c
+++ b/java/src/jni/h5dImp.c
@@ -207,7 +207,7 @@ Java_hdf_hdf5lib_H5_H5Dread(JNIEnv *env, jclass clss, jlong dataset_id, jlong me
if (!(typeSize = H5Tget_size(mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (readBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ if (NULL == (readBuf = calloc((size_t)vl_array_len, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread: failed to allocate raw VL read buffer");
}
else {
@@ -237,7 +237,7 @@ done:
H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, readBuf);
if (vl_data_class) {
- HDfree(readBuf);
+ free(readBuf);
}
else {
if (isCriticalPinning) {
@@ -288,7 +288,7 @@ Java_hdf_hdf5lib_H5_H5Dwrite(JNIEnv *env, jclass clss, jlong dataset_id, jlong m
if (!(typeSize = H5Tget_size(mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (writeBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ if (NULL == (writeBuf = calloc((size_t)vl_array_len, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dwrite: failed to allocate raw VL write buffer");
}
else {
@@ -318,7 +318,7 @@ done:
H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, writeBuf);
if (vl_data_class) {
- HDfree(writeBuf);
+ free(writeBuf);
}
else {
if (isCriticalPinning) {
@@ -1016,10 +1016,10 @@ Java_hdf_hdf5lib_H5_H5Dread_1string(JNIEnv *env, jclass clss, jlong dataset_id,
if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (cstr = (char *)HDmalloc(str_len + 1)))
+ if (NULL == (cstr = (char *)malloc(str_len + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_string: memory allocation failed");
- if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len)))
+ if (NULL == (c_buf = (char *)malloc((size_t)n * str_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_string: memory allocation failed");
if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
@@ -1027,7 +1027,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1string(JNIEnv *env, jclass clss, jlong dataset_id,
H5_LIBRARY_ERROR(ENVONLY);
for (i = 0, pos = 0; i < n; i++) {
- HDmemcpy(cstr, c_buf + pos, str_len);
+ memcpy(cstr, c_buf + pos, str_len);
cstr[str_len] = '\0';
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) {
@@ -1046,9 +1046,9 @@ Java_hdf_hdf5lib_H5_H5Dread_1string(JNIEnv *env, jclass clss, jlong dataset_id,
done:
if (c_buf)
- HDfree(c_buf);
+ free(c_buf);
if (cstr)
- HDfree(cstr);
+ free(cstr);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1string */
@@ -1083,7 +1083,7 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string(JNIEnv *env, jclass clss, jlong dataset_id,
if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len)))
+ if (NULL == (c_buf = (char *)malloc((size_t)n * str_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dwrite_string: memory allocation failed");
for (i = 0; i < (size_t)n; i++) {
@@ -1093,7 +1093,7 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string(JNIEnv *env, jclass clss, jlong dataset_id,
/*
* If the string object was NULL, skip it.
*/
- HDmemset(&c_buf[i * str_len], 0, str_len);
+ memset(&c_buf[i * str_len], 0, str_len);
continue;
}
@@ -1104,7 +1104,7 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string(JNIEnv *env, jclass clss, jlong dataset_id,
PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5Dwrite_string: string not pinned");
- HDstrncpy(&c_buf[i * str_len], utf8, str_len);
+ strncpy(&c_buf[i * str_len], utf8, str_len);
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
utf8 = NULL;
@@ -1120,7 +1120,7 @@ done:
if (utf8)
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
if (c_buf)
- HDfree(c_buf);
+ free(c_buf);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1string */
@@ -1160,7 +1160,7 @@ Java_hdf_hdf5lib_H5_H5DreadVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong
if (!(typeSize = H5Tget_size(mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (readBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ if (NULL == (readBuf = calloc((size_t)vl_array_len, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DreadVL: failed to allocate raw VL read buffer");
if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
@@ -1177,9 +1177,9 @@ done:
H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, readBuf);
if (is_variable) {
for (size_t i = 0; i < (size_t)vl_array_len; i++)
- HDfree(((char **)readBuf)[i]);
+ free(((char **)readBuf)[i]);
}
- HDfree(readBuf);
+ free(readBuf);
}
return (jint)status;
@@ -1221,7 +1221,7 @@ Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong
if (!(typeSize = H5Tget_size(mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (writeBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ if (NULL == (writeBuf = calloc((size_t)vl_array_len, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DwriteVL: failed to allocate raw VL write buffer");
if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
@@ -1239,10 +1239,10 @@ done:
H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, writeBuf);
if (is_variable) {
for (size_t i = 0; i < (size_t)vl_array_len; i++)
- HDfree(((char **)writeBuf)[i]);
+ free(((char **)writeBuf)[i]);
}
- HDfree(writeBuf);
+ free(writeBuf);
}
return (jint)status;
@@ -1342,7 +1342,7 @@ H5DreadVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid,
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DreadVL_str: buf length < 0");
}
- if (NULL == (strs = (char **)HDcalloc((size_t)n, sizeof(char *))))
+ if (NULL == (strs = (char **)calloc((size_t)n, sizeof(char *))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"H5DreadVL_str: failed to allocate variable length string read buffer");
@@ -1375,7 +1375,7 @@ done:
H5free_memory(strs[i]);
}
- HDfree(strs);
+ free(strs);
}
return status;
@@ -1394,7 +1394,7 @@ H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid
H5T_class_t tclass;
jstring jstr;
h5str_t h5str;
- hbool_t close_mem_space = FALSE;
+ bool close_mem_space = false;
size_t typeSize;
size_t i;
hid_t mem_space = mem_sid;
@@ -1402,7 +1402,7 @@ H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid
void *readBuf = NULL;
herr_t status = FAIL;
- HDmemset(&h5str, 0, sizeof(h5str_t));
+ memset(&h5str, 0, sizeof(h5str_t));
if (mem_space == H5S_ALL) {
mem_space = file_sid;
@@ -1413,7 +1413,7 @@ H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid
*/
if ((mem_space = H5Dget_space(did)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- close_mem_space = TRUE;
+ close_mem_space = true;
if (H5Sselect_all(mem_space) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1429,7 +1429,7 @@ H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid
if (!(typeSize = H5Tget_size(tid)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (readBuf = HDcalloc((size_t)n, typeSize)))
+ if (NULL == (readBuf = calloc((size_t)n, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate read buffer");
if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, readBuf)) < 0)
@@ -1465,7 +1465,7 @@ done:
h5str_free(&h5str);
if (readBuf) {
H5Treclaim(tid, mem_space, xfer_plist_id, readBuf);
- HDfree(readBuf);
+ free(readBuf);
}
if (close_mem_space)
H5Sclose(mem_space);
@@ -1568,7 +1568,7 @@ H5DwriteVL_str(JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL_str: buf length < 0");
}
- if (NULL == (writeBuf = (char **)HDcalloc((size_t)size + 1, sizeof(char *))))
+ if (NULL == (writeBuf = (char **)calloc((size_t)size + 1, sizeof(char *))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"H5DwriteVL_str: failed to allocate variable length string write buffer");
@@ -1590,10 +1590,10 @@ H5DwriteVL_str(JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space
PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5DwriteVL_str: string not pinned");
- if (NULL == (writeBuf[i] = (char *)HDmalloc((size_t)length + 1)))
+ if (NULL == (writeBuf[i] = (char *)malloc((size_t)length + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate string buffer");
- HDstrncpy(writeBuf[i], utf8, (size_t)length + 1);
+ strncpy(writeBuf[i], utf8, (size_t)length + 1);
writeBuf[i][length] = '\0';
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
@@ -1612,10 +1612,10 @@ done:
if (writeBuf) {
for (i = 0; i < size; i++) {
if (writeBuf[i])
- HDfree(writeBuf[i]);
+ free(writeBuf[i]);
}
- HDfree(writeBuf);
+ free(writeBuf);
}
return status;
@@ -1632,7 +1632,7 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si
{
const char *utf8 = NULL;
jstring jstr = NULL;
- hbool_t close_mem_space = FALSE;
+ bool close_mem_space = false;
size_t typeSize;
size_t i;
hid_t mem_space = mem_sid;
@@ -1649,7 +1649,7 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si
*/
if ((mem_space = H5Dget_space(did)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- close_mem_space = TRUE;
+ close_mem_space = true;
if (H5Sselect_all(mem_space) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1664,7 +1664,7 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si
if (!(typeSize = H5Tget_size(tid)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize)))
+ if (NULL == (writeBuf = calloc((size_t)n, typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer");
for (i = 0; i < (size_t)n; ++i) {
@@ -1674,7 +1674,7 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si
/*
* If the string object was NULL, skip it.
*/
- HDmemset(&(((char *)writeBuf)[i * typeSize]), 0, typeSize);
+ memset(&(((char *)writeBuf)[i * typeSize]), 0, typeSize);
continue;
}
@@ -1694,7 +1694,7 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si
if (!h5str_convert(ENVONLY, &utf8_copy, did, tid, &(((char *)writeBuf)[i * typeSize]), 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- HDfree(utf8_copy);
+ free(utf8_copy);
UNPIN_JAVA_STRING(ENVONLY, jstr, utf8);
utf8 = NULL;
@@ -1710,7 +1710,7 @@ done:
UNPIN_JAVA_STRING(ENVONLY, jstr, utf8);
if (writeBuf) {
H5Treclaim(tid, mem_space, xfer_plist_id, writeBuf);
- HDfree(writeBuf);
+ free(writeBuf);
}
if (close_mem_space)
H5Sclose(mem_space);
@@ -1736,14 +1736,14 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref(JNIEnv *env, jclass clss, jlong dataset_id
UNUSED(clss);
- HDmemset(&h5str, 0, sizeof(h5str_t));
+ memset(&h5str, 0, sizeof(h5str_t));
if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_reg_ref: buf length < 0");
}
- if (NULL == (ref_data = (H5R_ref_t *)HDcalloc(1, (size_t)n * sizeof(H5R_ref_t))))
+ if (NULL == (ref_data = (H5R_ref_t *)calloc(1, (size_t)n * sizeof(H5R_ref_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate read buffer");
if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
@@ -1774,7 +1774,7 @@ done:
if (h5str.s)
h5str_free(&h5str);
if (ref_data)
- HDfree(ref_data);
+ free(ref_data);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref */
@@ -2005,7 +2005,7 @@ Java_hdf_hdf5lib_H5_H5Dset_1extent(JNIEnv *env, jclass clss, jlong loc_id, jlong
PIN_LONG_ARRAY(ENVONLY, buf, dimsBuf, &isCopy, "H5Dset_extent: buffer not pinned");
- if (NULL == (dims = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ if (NULL == (dims = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dset_extent: failed to allocate dataset dimension buffer");
for (i = 0; i < rank; i++)
@@ -2016,7 +2016,7 @@ Java_hdf_hdf5lib_H5_H5Dset_1extent(JNIEnv *env, jclass clss, jlong loc_id, jlong
done:
if (dims)
- HDfree(dims);
+ free(dims);
if (dimsBuf)
UNPIN_LONG_ARRAY(ENVONLY, buf, dimsBuf, JNI_ABORT);
} /* end Java_hdf_hdf5lib_H5_H5Dset_1extent */
diff --git a/java/src/jni/h5eImp.c b/java/src/jni/h5eImp.c
index 0eec54f..a44363e 100644
--- a/java/src/jni/h5eImp.c
+++ b/java/src/jni/h5eImp.c
@@ -298,7 +298,7 @@ Java_hdf_hdf5lib_H5_H5Eget_1class_1name(JNIEnv *env, jclass clss, jlong cls_id)
if (!buf_size)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_class_name: no class name");
- if (NULL == (namePtr = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (namePtr = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Eget_class_name: malloc failed");
if ((H5Eget_class_name((hid_t)cls_id, (char *)namePtr, (size_t)buf_size + 1)) < 0)
@@ -310,7 +310,7 @@ Java_hdf_hdf5lib_H5_H5Eget_1class_1name(JNIEnv *env, jclass clss, jlong cls_id)
done:
if (namePtr)
- HDfree(namePtr);
+ free(namePtr);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1class_1name */
@@ -452,7 +452,7 @@ Java_hdf_hdf5lib_H5_H5Eget_1msg(JNIEnv *env, jclass clss, jlong msg_id, jintArra
if (!buf_size)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_msg: invalid message");
- if (NULL == (namePtr = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (namePtr = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Eget_msg: malloc failed");
PIN_INT_ARRAY(ENVONLY, error_msg_type_list, theArray, NULL, "H5Eget_msg: error_msg_type_list not pinned");
@@ -470,7 +470,7 @@ done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, error_msg_type_list, theArray, 0);
if (namePtr)
- HDfree(namePtr);
+ free(namePtr);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1msg */
diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c
index af06bdc..4a65a7f 100644
--- a/java/src/jni/h5fImp.c
+++ b/java/src/jni/h5fImp.c
@@ -126,7 +126,7 @@ Java_hdf_hdf5lib_H5_H5Fget_1name(JNIEnv *env, jclass clss, jlong file_id)
if ((buf_size = H5Fget_name((hid_t)file_id, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (namePtr = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (namePtr = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Fget_name: malloc failed");
if ((H5Fget_name((hid_t)file_id, namePtr, (size_t)buf_size + 1)) < 0)
@@ -138,7 +138,7 @@ Java_hdf_hdf5lib_H5_H5Fget_1name(JNIEnv *env, jclass clss, jlong file_id)
done:
if (namePtr)
- HDfree(namePtr);
+ free(namePtr);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1name */
@@ -430,7 +430,7 @@ Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids(JNIEnv *env, jclass clss, jlong file_id, ji
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_obj_ids: obj_id_list length < 0");
}
- if (NULL == (id_list = (hid_t *)HDmalloc((size_t)rank * sizeof(hid_t))))
+ if (NULL == (id_list = (hid_t *)malloc((size_t)rank * sizeof(hid_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Fget_obj_ids: malloc failed");
if ((ret_val = H5Fget_obj_ids((hid_t)file_id, (unsigned int)types, (size_t)maxObjs, id_list)) < 0)
@@ -442,7 +442,7 @@ Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids(JNIEnv *env, jclass clss, jlong file_id, ji
done:
if (id_list)
- HDfree(id_list);
+ free(id_list);
if (obj_id_listP)
UNPIN_LONG_ARRAY(ENVONLY, obj_id_list, obj_id_listP, (ret_val < 0) ? JNI_ABORT : 0);
@@ -688,8 +688,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status(JNIEnv *env, jclass clss, jlong
{
jboolean *mdc_logging_status_ptr = NULL;
jboolean isCopy;
- hbool_t is_enabled;
- hbool_t is_currently_logging;
+ bool is_enabled;
+ bool is_currently_logging;
jsize size;
UNUSED(clss);
@@ -729,14 +729,14 @@ done:
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fset_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong file_id, jboolean minimize)
{
- hbool_t minimize_val;
- herr_t retVal = FAIL;
+ bool minimize_val;
+ herr_t retVal = FAIL;
UNUSED(clss);
- minimize_val = (minimize == JNI_TRUE) ? TRUE : FALSE;
+ minimize_val = (minimize == JNI_TRUE) ? true : false;
- if ((retVal = H5Fset_dset_no_attrs_hint((hid_t)file_id, (hbool_t)minimize_val)) < 0)
+ if ((retVal = H5Fset_dset_no_attrs_hint((hid_t)file_id, (bool)minimize_val)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -752,14 +752,14 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong file_id)
{
jboolean bval = JNI_FALSE;
- hbool_t minimize = FALSE;
+ bool minimize = false;
UNUSED(clss);
- if (H5Fget_dset_no_attrs_hint((hid_t)file_id, (hbool_t *)&minimize) < 0)
+ if (H5Fget_dset_no_attrs_hint((hid_t)file_id, (bool *)&minimize) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (minimize == TRUE)
+ if (minimize == true)
bval = JNI_TRUE;
done:
diff --git a/java/src/jni/h5iImp.c b/java/src/jni/h5iImp.c
index e483c4e..46e8904 100644
--- a/java/src/jni/h5iImp.c
+++ b/java/src/jni/h5iImp.c
@@ -68,7 +68,7 @@ Java_hdf_hdf5lib_H5_H5Iget_1name_1long(JNIEnv *env, jclass clss, jlong obj_id, j
if (buf_size < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Iget_name_long: buf_size < 0");
- if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (aName = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Iget_name_long: malloc failed");
if ((size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1)) < 0)
@@ -83,7 +83,7 @@ Java_hdf_hdf5lib_H5_H5Iget_1name_1long(JNIEnv *env, jclass clss, jlong obj_id, j
done:
if (aName)
- HDfree(aName);
+ free(aName);
return (jlong)size;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1name */
@@ -106,7 +106,7 @@ Java_hdf_hdf5lib_H5_H5Iget_1name(JNIEnv *env, jclass clss, jlong obj_id)
if ((buf_size = H5Iget_name((hid_t)obj_id, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (aName = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Iget_name: malloc failed");
if (H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1) < 0)
@@ -118,7 +118,7 @@ Java_hdf_hdf5lib_H5_H5Iget_1name(JNIEnv *env, jclass clss, jlong obj_id)
done:
if (aName)
- HDfree(aName);
+ free(aName);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1name */
@@ -327,7 +327,7 @@ Java_hdf_hdf5lib_H5_H5Iclear_1type(JNIEnv *env, jclass clss, jint type, jboolean
{
UNUSED(clss);
- if (H5Iclear_type((H5I_type_t)type, (hbool_t)force) < 0)
+ if (H5Iclear_type((H5I_type_t)type, (bool)force) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
diff --git a/java/src/jni/h5jni.h b/java/src/jni/h5jni.h
index 5af5a91..7b1bf9d 100644
--- a/java/src/jni/h5jni.h
+++ b/java/src/jni/h5jni.h
@@ -82,7 +82,7 @@
H5_JNI_FATAL_ERROR(envptr, "JNI error: GetMethodID failed"); \
} \
if (NULL == (ret_obj = (*envptr)->NewObjectA(envptr, cls, constructor, (args)))) { \
- HDprintf("FATAL ERROR: %s: Creation failed\n", classname); \
+ printf("FATAL ERROR: %s: Creation failed\n", classname); \
CHECK_JNI_EXCEPTION(envptr, JNI_FALSE); \
} \
} while (0)
@@ -355,7 +355,7 @@ extern jobject get_enum_object(JNIEnv *env, const char *enum_class_name, jint en
extern jobject create_H5G_info_t(JNIEnv *env, H5G_info_t group_info);
/* implemented at h5oimp.c */
-extern jobject create_H5O_token_t(JNIEnv *env, const H5O_token_t *token, hbool_t is_critical_pinning);
+extern jobject create_H5O_token_t(JNIEnv *env, const H5O_token_t *token, bool is_critical_pinning);
#ifdef __cplusplus
} /* end extern "C" */
diff --git a/java/src/jni/h5lImp.c b/java/src/jni/h5lImp.c
index 67f4850..13dbc08 100644
--- a/java/src/jni/h5lImp.c
+++ b/java/src/jni/h5lImp.c
@@ -277,7 +277,7 @@ done:
JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Lget_1info(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
- H5L_info2_t infobuf = {H5L_TYPE_ERROR, FALSE, -1, H5T_CSET_ERROR, {{{0}}}};
+ H5L_info2_t infobuf = {H5L_TYPE_ERROR, false, -1, H5T_CSET_ERROR, {{{0}}}};
const char *linkName = NULL;
jvalue args[5];
herr_t status = FAIL;
@@ -302,7 +302,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1info(JNIEnv *env, jclass clss, jlong loc_id, jstring
jobject token;
/* Create an H5O_token_t object */
- if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.u.token, FALSE)))
+ if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.u.token, false)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
args[0].i = infobuf.type;
@@ -340,7 +340,7 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jint index_field, jint order, jlong link_n, jlong access_id)
{
- H5L_info2_t infobuf = {H5L_TYPE_ERROR, FALSE, -1, H5T_CSET_ERROR, {{{0}}}};
+ H5L_info2_t infobuf = {H5L_TYPE_ERROR, false, -1, H5T_CSET_ERROR, {{{0}}}};
const char *groupName = NULL;
jvalue args[5];
herr_t status = FAIL;
@@ -367,7 +367,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id
jobject token;
/* Create an H5O_token_t object */
- if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.u.token, FALSE)))
+ if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.u.token, false)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
args[0].i = infobuf.type;
@@ -424,7 +424,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id
H5_LIBRARY_ERROR(ENVONLY);
/* add extra space for the null terminator */
- if (NULL == (linkName = (char *)HDmalloc(sizeof(char) * (size_t)status_size + 1)))
+ if (NULL == (linkName = (char *)malloc(sizeof(char) * (size_t)status_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_name_by_idx: failed to allocate buffer for link name");
if ((H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order,
@@ -438,7 +438,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id
done:
if (linkName)
- HDfree(linkName);
+ free(linkName);
if (groupName)
UNPIN_JAVA_STRING(ENVONLY, name, groupName);
@@ -454,7 +454,7 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Lget_1value(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jobjectArray link_value, jlong access_id)
{
- H5L_info2_t infobuf = {H5L_TYPE_ERROR, FALSE, -1, H5T_CSET_ERROR, {{{0}}}};
+ H5L_info2_t infobuf = {H5L_TYPE_ERROR, false, -1, H5T_CSET_ERROR, {{{0}}}};
const char *file_name = NULL;
const char *obj_name = NULL;
const char *linkName = NULL;
@@ -478,7 +478,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1value(JNIEnv *env, jclass clss, jlong loc_id, jstrin
if (H5L_TYPE_HARD == infobuf.type)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val: hard links are unsupported");
- if (NULL == (linkValue = (char *)HDmalloc(sizeof(char) * infobuf.u.val_size + 1)))
+ if (NULL == (linkValue = (char *)malloc(sizeof(char) * infobuf.u.val_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_val: failed to allocate buffer for link value");
if ((status = H5Lget_val((hid_t)loc_id, linkName, (void *)linkValue, infobuf.u.val_size + 1,
@@ -527,7 +527,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1value(JNIEnv *env, jclass clss, jlong loc_id, jstrin
done:
if (linkValue)
- HDfree(linkValue);
+ free(linkValue);
if (linkName)
UNPIN_JAVA_STRING(ENVONLY, name, linkName);
@@ -544,7 +544,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx(JNIEnv *env, jclass clss, jlong loc_i
jint index_field, jint order, jlong link_n,
jobjectArray link_value, jlong access_id)
{
- H5L_info2_t infobuf = {H5L_TYPE_ERROR, FALSE, -1, H5T_CSET_ERROR, {{{0}}}};
+ H5L_info2_t infobuf = {H5L_TYPE_ERROR, false, -1, H5T_CSET_ERROR, {{{0}}}};
const char *file_name = NULL;
const char *obj_name = NULL;
const char *grpName = NULL;
@@ -572,7 +572,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx(JNIEnv *env, jclass clss, jlong loc_i
if (!infobuf.u.val_size)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (linkValue = (void *)HDmalloc(infobuf.u.val_size + 1)))
+ if (NULL == (linkValue = (void *)malloc(infobuf.u.val_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_val_by_idx: failed to allocate buffer for link value");
if ((status = H5Lget_val_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order,
@@ -622,7 +622,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx(JNIEnv *env, jclass clss, jlong loc_i
done:
if (linkValue)
- HDfree(linkValue);
+ free(linkValue);
if (grpName)
UNPIN_JAVA_STRING(ENVONLY, name, grpName);
@@ -706,7 +706,7 @@ H5L_iterate_cb(hid_t g_id, const char *name, const H5L_info2_t *info, void *cb_d
jobject token;
/* Create an H5O_token_t object */
- if (NULL == (token = create_H5O_token_t(CBENVONLY, &info->u.token, FALSE)))
+ if (NULL == (token = create_H5O_token_t(CBENVONLY, &info->u.token, false)))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
args[0].i = info->type;
diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c
index 998a607..c97d7da 100644
--- a/java/src/jni/h5oImp.c
+++ b/java/src/jni/h5oImp.c
@@ -45,7 +45,7 @@ static herr_t H5O_iterate_cb(hid_t g_id, const char *name, const H5O_info2_t *in
* Create a java object of hdf.hdf5lib.structs.H5O_token_t.
*/
jobject
-create_H5O_token_t(JNIEnv *envptr, const H5O_token_t *token, hbool_t is_critical_pinning)
+create_H5O_token_t(JNIEnv *envptr, const H5O_token_t *token, bool is_critical_pinning)
{
jbyteArray tokenByteBuf;
jboolean token_buf_is_copy;
@@ -63,7 +63,7 @@ create_H5O_token_t(JNIEnv *envptr, const H5O_token_t *token, hbool_t is_critical
PIN_BYTE_ARRAY(envptr, tokenByteBuf, token_buf, &token_buf_is_copy,
"create_H5O_token_t: object token buffer not pinned");
- HDmemcpy(token_buf, token, sizeof(H5O_token_t));
+ memcpy(token_buf, token, sizeof(H5O_token_t));
if (is_critical_pinning)
UNPIN_ARRAY_CRITICAL(envptr, tokenByteBuf, token_buf, 0);
@@ -193,7 +193,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1info(JNIEnv *env, jclass clss, jlong loc_id, jint fi
if ((status = H5Oget_info3((hid_t)loc_id, &infobuf, (unsigned)fields)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, FALSE)))
+ if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, false)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
args[0].j = (jlong)infobuf.fileno;
@@ -241,7 +241,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name(JNIEnv *env, jclass clss, jlong loc_i
H5_LIBRARY_ERROR(ENVONLY);
/* Create an H5O_token_t object */
- if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, FALSE)))
+ if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, false)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
args[0].j = (jlong)infobuf.fileno;
@@ -293,7 +293,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id
H5_LIBRARY_ERROR(ENVONLY);
/* Create an H5O_token_t object */
- if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, FALSE)))
+ if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, false)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
args[0].j = (jlong)infobuf.fileno;
@@ -580,7 +580,7 @@ H5O_iterate_cb(hid_t g_id, const char *name, const H5O_info2_t *info, void *cb_d
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
/* Create an H5O_token_t object */
- if (NULL == (token = create_H5O_token_t(CBENVONLY, &info->token, FALSE)))
+ if (NULL == (token = create_H5O_token_t(CBENVONLY, &info->token, false)))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
args[0].j = (jlong)info->fileno;
@@ -756,7 +756,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1comment(JNIEnv *env, jclass clss, jlong loc_id)
H5_LIBRARY_ERROR(ENVONLY);
if (buf_size) {
- if (NULL == (oComment = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (oComment = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Oget_comment: failed to allocate object comment buffer");
if ((status = H5Oget_comment((hid_t)loc_id, oComment, (size_t)buf_size + 1)) < 0)
@@ -769,7 +769,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1comment(JNIEnv *env, jclass clss, jlong loc_id)
done:
if (oComment)
- HDfree(oComment);
+ free(oComment);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1comment */
@@ -801,7 +801,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name(JNIEnv *env, jclass clss, jlong lo
H5_LIBRARY_ERROR(ENVONLY);
if (buf_size) {
- if (NULL == (objComment = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (objComment = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"H5Oget_comment_by_name: failed to allocate buffer for object comment");
@@ -816,7 +816,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name(JNIEnv *env, jclass clss, jlong lo
done:
if (objComment)
- HDfree(objComment);
+ free(objComment);
if (objName)
UNPIN_JAVA_STRING(ENVONLY, name, objName);
@@ -916,7 +916,7 @@ Java_hdf_hdf5lib_H5__1H5Oopen_1by_1token(JNIEnv *env, jclass clss, jlong loc_id,
PIN_BYTE_ARRAY(ENVONLY, (jbyteArray)token_data, token_buf, &token_buf_is_copy,
"H5Oopen_by_token: token buffer not pinned");
- HDmemcpy(&obj_token, token_buf, sizeof(H5O_token_t));
+ memcpy(&obj_token, token_buf, sizeof(H5O_token_t));
UNPIN_BYTE_ARRAY(ENVONLY, (jbyteArray)token_data, token_buf, JNI_ABORT);
token_buf = NULL;
@@ -1037,14 +1037,14 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Oare_1mdc_1flushes_1disabled(JNIEnv *env, jclass clss, jlong loc_id)
{
jboolean bval = JNI_FALSE;
- hbool_t is_disabled = FALSE;
+ bool is_disabled = false;
UNUSED(clss);
if (H5Oare_mdc_flushes_disabled((hid_t)loc_id, &is_disabled) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (is_disabled == TRUE)
+ if (is_disabled == true)
bval = JNI_TRUE;
done:
diff --git a/java/src/jni/h5pDAPLImp.c b/java/src/jni/h5pDAPLImp.c
index 666f47d..fdafd4c 100644
--- a/java/src/jni/h5pDAPLImp.c
+++ b/java/src/jni/h5pDAPLImp.c
@@ -150,7 +150,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix(JNIEnv *env, jclass clss, jlong dapl_i
if ((prefix_size = H5Pget_efile_prefix((hid_t)dapl_id, (char *)NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (pre = (char *)HDmalloc(sizeof(char) * (size_t)prefix_size + 1)))
+ if (NULL == (pre = (char *)malloc(sizeof(char) * (size_t)prefix_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_efile_prefix: memory allocation failed");
if (H5Pget_efile_prefix((hid_t)dapl_id, (char *)pre, (size_t)prefix_size + 1) < 0)
@@ -165,7 +165,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix(JNIEnv *env, jclass clss, jlong dapl_i
done:
if (pre)
- HDfree(pre);
+ free(pre);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix */
diff --git a/java/src/jni/h5pDCPLImp.c b/java/src/jni/h5pDCPLImp.c
index f549800..d600177 100644
--- a/java/src/jni/h5pDCPLImp.c
+++ b/java/src/jni/h5pDCPLImp.c
@@ -104,7 +104,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1chunk(JNIEnv *env, jclass clss, jlong plist, jint nd
PIN_BYTE_ARRAY(ENVONLY, dim, theArray, &isCopy, "H5Pset_chunk: dim array not pinned");
- if (NULL == (da = lp = (hsize_t *)HDmalloc(rank * sizeof(hsize_t))))
+ if (NULL == (da = lp = (hsize_t *)malloc(rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pset_chunk: memory allocation failed");
jlp = (jlong *)theArray;
@@ -119,7 +119,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1chunk(JNIEnv *env, jclass clss, jlong plist, jint nd
done:
if (da)
- HDfree(da);
+ free(da);
if (theArray)
UNPIN_BYTE_ARRAY(ENVONLY, dim, theArray, JNI_ABORT);
@@ -155,7 +155,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1chunk(JNIEnv *env, jclass clss, jlong plist, jint ma
PIN_LONG_ARRAY(ENVONLY, dims, theArray, &isCopy, "H5Pget_chunk: input dims not pinned");
- if (NULL == (da = (hsize_t *)HDmalloc((size_t)max_ndims * sizeof(hsize_t))))
+ if (NULL == (da = (hsize_t *)malloc((size_t)max_ndims * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_chunk: memory allocation failed");
if ((status = H5Pget_chunk((hid_t)plist, (int)max_ndims, da)) < 0)
@@ -166,7 +166,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1chunk(JNIEnv *env, jclass clss, jlong plist, jint ma
done:
if (da)
- HDfree(da);
+ free(da);
if (theArray)
UNPIN_LONG_ARRAY(ENVONLY, dims, theArray, (status < 0) ? JNI_ABORT : 0);
@@ -219,14 +219,14 @@ done:
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong dcpl_id, jboolean minimize)
{
- hbool_t minimize_val;
- herr_t retVal = FAIL;
+ bool minimize_val;
+ herr_t retVal = FAIL;
UNUSED(clss);
- minimize_val = (JNI_TRUE == minimize) ? TRUE : FALSE;
+ minimize_val = (JNI_TRUE == minimize) ? true : false;
- if ((retVal = H5Pset_dset_no_attrs_hint((hid_t)dcpl_id, (hbool_t)minimize_val)) < 0)
+ if ((retVal = H5Pset_dset_no_attrs_hint((hid_t)dcpl_id, (bool)minimize_val)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -241,15 +241,15 @@ done:
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong dcpl_id)
{
- hbool_t minimize = FALSE;
+ bool minimize = false;
jboolean bval = JNI_FALSE;
UNUSED(clss);
- if (H5Pget_dset_no_attrs_hint((hid_t)dcpl_id, (hbool_t *)&minimize) < 0)
+ if (H5Pget_dset_no_attrs_hint((hid_t)dcpl_id, (bool *)&minimize) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (minimize == TRUE)
+ if (minimize == true)
bval = JNI_TRUE;
done:
@@ -576,7 +576,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter(JNIEnv *env, jclass clss, jlong plist, jint f
if (NULL == cd_values)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: cd_values is NULL");
- if (NULL == (filter = (char *)HDmalloc(sizeof(char) * (size_t)namelen)))
+ if (NULL == (filter = (char *)malloc(sizeof(char) * (size_t)namelen)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter: memory allocation failed");
PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter: flags array not pinned");
@@ -616,7 +616,7 @@ done:
if (flagsArray)
UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0);
if (filter)
- HDfree(filter);
+ free(filter);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter */
@@ -651,7 +651,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter2(JNIEnv *env, jclass clss, jlong plist, jint
if (NULL == filter_config)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: filter_config is NULL");
- if (NULL == (filter = (char *)HDmalloc(sizeof(char) * (size_t)namelen)))
+ if (NULL == (filter = (char *)malloc(sizeof(char) * (size_t)namelen)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter2: memory allocation failed");
PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter2: flags array not pinned");
@@ -714,7 +714,7 @@ done:
if (flagsArray)
UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0);
if (filter)
- HDfree(filter);
+ free(filter);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter2 */
@@ -754,7 +754,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id(JNIEnv *env, jclass clss, jlong plist
if (NULL == name)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: name is NULL");
- if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)bs)))
+ if (NULL == (aName = (char *)malloc(sizeof(char) * (size_t)bs)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id: memory allocation failed");
PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id: flags not pinned");
@@ -800,7 +800,7 @@ done:
if (flagsArray)
UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0);
if (aName)
- HDfree(aName);
+ free(aName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id */
@@ -842,7 +842,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2(JNIEnv *env, jclass clss, jlong plis
if (NULL == filter_config)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: filter_config is NULL");
- if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)bs)))
+ if (NULL == (aName = (char *)malloc(sizeof(char) * (size_t)bs)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id2: memory allocation failed");
PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id2: flags not pinned");
@@ -886,7 +886,7 @@ done:
if (flagsArray)
UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0);
if (aName)
- HDfree(aName);
+ free(aName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 */
@@ -1103,7 +1103,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1external(JNIEnv *env, jclass clss, jlong plist, jint
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_external: size input array < 2");
if (name_size > 0)
- if (NULL == (file = (char *)HDmalloc(sizeof(char) * (size_t)name_size)))
+ if (NULL == (file = (char *)malloc(sizeof(char) * (size_t)name_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_external: memory allocation failed");
if ((status = H5Pget_external((hid_t)plist, (unsigned)idx, (size_t)name_size, file, (off_t *)&o,
@@ -1134,7 +1134,7 @@ done:
if (theArray)
UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
if (file)
- HDfree(file);
+ free(file);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1external */
@@ -1228,7 +1228,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname(JNIEnv *env, jclass clss, jlong dc
if ((buf_size = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)idx, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (dname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (dname = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_dsetname: memory allocation failed");
if (H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)idx, dname, (size_t)buf_size + 1) < 0)
@@ -1244,7 +1244,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname(JNIEnv *env, jclass clss, jlong dc
done:
if (dname)
- HDfree(dname);
+ free(dname);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname */
@@ -1267,7 +1267,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename(JNIEnv *env, jclass clss, jlong dc
if ((buf_size = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)idx, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (fname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (fname = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_filename: memory allocation failed");
if (H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)idx, fname, (size_t)buf_size + 1) < 0)
@@ -1283,7 +1283,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename(JNIEnv *env, jclass clss, jlong dc
done:
if (fname)
- HDfree(fname);
+ free(fname);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename */
@@ -1369,7 +1369,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix(JNIEnv *env, jclass clss, jlong dapl
if ((prefix_size = H5Pget_virtual_prefix((hid_t)dapl_id, (char *)NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (pre = (char *)HDmalloc(sizeof(char) * (size_t)prefix_size + 1)))
+ if (NULL == (pre = (char *)malloc(sizeof(char) * (size_t)prefix_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_prefix: memory allocation failed");
if (H5Pget_virtual_prefix((hid_t)dapl_id, (char *)pre, (size_t)prefix_size + 1) < 0)
@@ -1384,7 +1384,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix(JNIEnv *env, jclass clss, jlong dapl
done:
if (pre)
- HDfree(pre);
+ free(pre);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix */
diff --git a/java/src/jni/h5pDXPLImp.c b/java/src/jni/h5pDXPLImp.c
index 6a11c0e..7926db1 100644
--- a/java/src/jni/h5pDXPLImp.c
+++ b/java/src/jni/h5pDXPLImp.c
@@ -171,17 +171,17 @@ done:
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1preserve(JNIEnv *env, jclass clss, jlong plist, jboolean status)
{
- hbool_t st = JNI_FALSE;
- herr_t retVal = FAIL;
+ bool st = JNI_FALSE;
+ herr_t retVal = FAIL;
UNUSED(clss);
if (JNI_TRUE == status)
- st = TRUE;
+ st = true;
else if (JNI_FALSE == status)
st = false;
else
- H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_preserve: status not TRUE or FALSE");
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_preserve: status not true or false");
if ((retVal = H5Pset_preserve((hid_t)plist, st)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -301,7 +301,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1data_1transform(JNIEnv *env, jclass clss, jlong plis
if ((express_size = H5Pget_data_transform((hid_t)plist_id, (char *)NULL, (size_t)size)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (express = (char *)HDmalloc(sizeof(char) * (size_t)express_size + 1)))
+ if (NULL == (express = (char *)malloc(sizeof(char) * (size_t)express_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_data_transform: memory allocation failed");
if (H5Pget_data_transform((hid_t)plist_id, express, (size_t)express_size + 1) < 0)
@@ -319,7 +319,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1data_1transform(JNIEnv *env, jclass clss, jlong plis
done:
if (express)
- HDfree(express);
+ free(express);
return (jlong)express_size;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1data_1transform */
diff --git a/java/src/jni/h5pFAPLImp.c b/java/src/jni/h5pFAPLImp.c
index 80ed6c6..7708756 100644
--- a/java/src/jni/h5pFAPLImp.c
+++ b/java/src/jni/h5pFAPLImp.c
@@ -109,7 +109,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core(JNIEnv *env, jclass clss, jlong fapl_id,
UNUSED(clss);
- if ((retVal = H5Pset_fapl_core((hid_t)fapl_id, (size_t)increment, (hbool_t)backing_store)) < 0)
+ if ((retVal = H5Pset_fapl_core((hid_t)fapl_id, (size_t)increment, (bool)backing_store)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -145,7 +145,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core(JNIEnv *env, jclass clss, jlong fapl_id,
long long inc_temp = *incArray;
size_t inc_t = (size_t)inc_temp;
- if ((status = H5Pget_fapl_core((hid_t)fapl_id, &inc_t, (hbool_t *)backArray)) < 0)
+ if ((status = H5Pget_fapl_core((hid_t)fapl_id, &inc_t, (bool *)backArray)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
*incArray = (jlong)inc_t;
@@ -302,7 +302,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family(JNIEnv *env, jclass clss, jlong tid, jl
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_family: memb_size array length < 0");
}
- if (NULL == (sa = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ if (NULL == (sa = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_family: memory allocation failed");
PIN_LONG_ARRAY(ENVONLY, memb_plist, plistArray, &isCopy, "H5Pget_family: plistArray not pinned");
@@ -317,7 +317,7 @@ done:
if (plistArray)
UNPIN_LONG_ARRAY(ENVONLY, memb_plist, plistArray, (status < 0) ? JNI_ABORT : 0);
if (sa)
- HDfree(sa);
+ free(sa);
if (sizeArray)
UNPIN_LONG_ARRAY(ENVONLY, memb_size, sizeArray, (status < 0) ? JNI_ABORT : 0);
@@ -442,7 +442,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1hdfs(JNIEnv *env, jclass clss, jlong fapl_id,
UNUSED(clss);
#ifdef H5_HAVE_LIBHDFS
- HDmemset(&instance, 0, sizeof(H5FD_hdfs_fapl_t));
+ memset(&instance, 0, sizeof(H5FD_hdfs_fapl_t));
if (NULL == (cls = ENVPTR->GetObjectClass(ENVONLY, fapl_config)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -462,14 +462,14 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1hdfs(JNIEnv *env, jclass clss, jlong fapl_id,
if (j_str) {
PIN_JAVA_STRING(ENVONLY, j_str, str, NULL, "H5FDset_fapl_hdfs: fapl_config namenode_name not pinned");
- HDstrncpy(instance.namenode_name, str, H5FD__HDFS_NODE_NAME_SPACE + 1);
+ strncpy(instance.namenode_name, str, H5FD__HDFS_NODE_NAME_SPACE + 1);
instance.namenode_name[H5FD__HDFS_NODE_NAME_SPACE] = '\0';
UNPIN_JAVA_STRING(ENVONLY, j_str, str);
str = NULL;
}
else
- HDmemset(instance.namenode_name, 0, H5FD__HDFS_NODE_NAME_SPACE + 1);
+ memset(instance.namenode_name, 0, H5FD__HDFS_NODE_NAME_SPACE + 1);
if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "namenode_port", "I")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -486,14 +486,14 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1hdfs(JNIEnv *env, jclass clss, jlong fapl_id,
if (j_str) {
PIN_JAVA_STRING(ENVONLY, j_str, str, NULL, "H5FDset_fapl_hdfs: fapl_config user_name not pinned");
- HDstrncpy(instance.user_name, str, H5FD__HDFS_USER_NAME_SPACE + 1);
+ strncpy(instance.user_name, str, H5FD__HDFS_USER_NAME_SPACE + 1);
instance.user_name[H5FD__HDFS_USER_NAME_SPACE] = '\0';
UNPIN_JAVA_STRING(ENVONLY, j_str, str);
str = NULL;
}
else
- HDmemset(instance.user_name, 0, H5FD__HDFS_USER_NAME_SPACE + 1);
+ memset(instance.user_name, 0, H5FD__HDFS_USER_NAME_SPACE + 1);
if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "kerberos_ticket_cache", "Ljava/lang/String;")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -505,14 +505,14 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1hdfs(JNIEnv *env, jclass clss, jlong fapl_id,
PIN_JAVA_STRING(ENVONLY, j_str, str, NULL,
"H5FDset_fapl_hdfs: fapl_config kerberos_ticket_cache not pinned");
- HDstrncpy(instance.kerberos_ticket_cache, str, H5FD__HDFS_KERB_CACHE_PATH_SPACE + 1);
+ strncpy(instance.kerberos_ticket_cache, str, H5FD__HDFS_KERB_CACHE_PATH_SPACE + 1);
instance.kerberos_ticket_cache[H5FD__HDFS_KERB_CACHE_PATH_SPACE] = '\0';
UNPIN_JAVA_STRING(ENVONLY, j_str, str);
str = NULL;
}
else
- HDmemset(instance.kerberos_ticket_cache, 0, H5FD__HDFS_KERB_CACHE_PATH_SPACE + 1);
+ memset(instance.kerberos_ticket_cache, 0, H5FD__HDFS_KERB_CACHE_PATH_SPACE + 1);
if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "stream_buffer_size", "I")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -607,7 +607,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi(JNIEnv *env, jclass clss, jlong tid, jin
UNUSED(clss);
- HDmemset(member_name, 0, H5FD_MEM_NTYPES * sizeof(char *));
+ memset(member_name, 0, H5FD_MEM_NTYPES * sizeof(char *));
if (memb_map)
PIN_INT_ARRAY(ENVONLY, memb_map, themapArray, &isCopy, "H5Pset_fapl_multi: memb_map not pinned");
@@ -638,12 +638,12 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi(JNIEnv *env, jclass clss, jlong tid, jin
PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5Pset_fapl_multi: string not pinned");
- str_len = HDstrlen(utf8);
+ str_len = strlen(utf8);
- if (NULL == (member_name[i] = (char *)HDmalloc(str_len + 1)))
+ if (NULL == (member_name[i] = (char *)malloc(str_len + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pset_fapl_multi: memory allocation failed");
- HDstrncpy(member_name[i], utf8, str_len + 1);
+ strncpy(member_name[i], utf8, str_len + 1);
(member_name[i])[str_len] = '\0';
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
@@ -656,7 +656,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi(JNIEnv *env, jclass clss, jlong tid, jin
}
if ((status = H5Pset_fapl_multi((hid_t)tid, (const H5FD_mem_t *)themapArray, (const hid_t *)thefaplArray,
- mName, (const haddr_t *)theaddrArray, (hbool_t)relax)) < 0)
+ mName, (const haddr_t *)theaddrArray, (bool)relax)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (memb_name && mName) {
@@ -692,7 +692,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi(JNIEnv *env, jclass clss, jlong tid, jin
ENVPTR->DeleteLocalRef(ENVONLY, o);
ENVPTR->DeleteLocalRef(ENVONLY, rstring);
- HDfree(member_name[i]);
+ free(member_name[i]);
member_name[i] = NULL;
}
}
@@ -700,7 +700,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi(JNIEnv *env, jclass clss, jlong tid, jin
done:
for (i = 0; i < H5FD_MEM_NTYPES; i++) {
if (member_name[i])
- HDfree(member_name[i]);
+ free(member_name[i]);
}
if (utf8)
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
@@ -741,11 +741,11 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi(JNIEnv *env, jclass clss, jlong tid, jin
if (memb_addr)
PIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, &isCopy, "H5Pget_fapl_multi: memb_addr not pinned");
if (memb_name)
- if (NULL == (mName = (char **)HDcalloc(H5FD_MEM_NTYPES, sizeof(*mName))))
+ if (NULL == (mName = (char **)calloc(H5FD_MEM_NTYPES, sizeof(*mName))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_multi: memory allocation failed");
if ((status = H5Pget_fapl_multi((hid_t)tid, (H5FD_mem_t *)themapArray, (hid_t *)thefaplArray, mName,
- (haddr_t *)theaddrArray, (hbool_t *)&relax)) < 0)
+ (haddr_t *)theaddrArray, (bool *)&relax)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (memb_name && mName) {
@@ -862,7 +862,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1ros3(JNIEnv *env, jclass clss, jlong fapl_id,
UNUSED(clss);
#ifdef H5_HAVE_ROS3_VFD
- HDmemset(&instance, 0, sizeof(H5FD_ros3_fapl_t));
+ memset(&instance, 0, sizeof(H5FD_ros3_fapl_t));
if (NULL == (cls = ENVPTR->GetObjectClass(ENVONLY, fapl_config)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -882,14 +882,14 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1ros3(JNIEnv *env, jclass clss, jlong fapl_id,
if (j_str) {
PIN_JAVA_STRING(ENVONLY, j_str, str, NULL, "H5Pset_fapl_ros3: fapl_config aws_region not pinned");
- HDstrncpy(instance.aws_region, str, H5FD_ROS3_MAX_REGION_LEN + 1);
+ strncpy(instance.aws_region, str, H5FD_ROS3_MAX_REGION_LEN + 1);
instance.aws_region[H5FD_ROS3_MAX_REGION_LEN] = '\0';
UNPIN_JAVA_STRING(ENVONLY, j_str, str);
str = NULL;
}
else
- HDmemset(instance.aws_region, 0, H5FD_ROS3_MAX_REGION_LEN + 1);
+ memset(instance.aws_region, 0, H5FD_ROS3_MAX_REGION_LEN + 1);
if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "secret_id", "Ljava/lang/String;")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -900,14 +900,14 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1ros3(JNIEnv *env, jclass clss, jlong fapl_id,
if (j_str) {
PIN_JAVA_STRING(ENVONLY, j_str, str, NULL, "H5Pset_fapl_ros3: fapl_config secret_id not pinned");
- HDstrncpy(instance.secret_id, str, H5FD_ROS3_MAX_SECRET_ID_LEN + 1);
+ strncpy(instance.secret_id, str, H5FD_ROS3_MAX_SECRET_ID_LEN + 1);
instance.secret_id[H5FD_ROS3_MAX_SECRET_ID_LEN] = '\0';
UNPIN_JAVA_STRING(ENVONLY, j_str, str);
str = NULL;
}
else
- HDmemset(instance.secret_id, 0, H5FD_ROS3_MAX_SECRET_ID_LEN + 1);
+ memset(instance.secret_id, 0, H5FD_ROS3_MAX_SECRET_ID_LEN + 1);
if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "secret_key", "Ljava/lang/String;")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -918,17 +918,17 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1ros3(JNIEnv *env, jclass clss, jlong fapl_id,
if (j_str) {
PIN_JAVA_STRING(ENVONLY, j_str, str, NULL, "H5Pset_fapl_ros3: fapl_config secret_key not pinned");
- HDstrncpy(instance.secret_key, str, H5FD_ROS3_MAX_SECRET_KEY_LEN + 1);
+ strncpy(instance.secret_key, str, H5FD_ROS3_MAX_SECRET_KEY_LEN + 1);
instance.secret_key[H5FD_ROS3_MAX_SECRET_KEY_LEN] = '\0';
UNPIN_JAVA_STRING(ENVONLY, j_str, str);
str = NULL;
}
else
- HDmemset(instance.secret_key, 0, H5FD_ROS3_MAX_SECRET_KEY_LEN + 1);
+ memset(instance.secret_key, 0, H5FD_ROS3_MAX_SECRET_KEY_LEN + 1);
if (instance.aws_region[0] != '\0' && instance.secret_id[0] != '\0' && instance.secret_key[0] != '\0')
- instance.authenticate = TRUE;
+ instance.authenticate = true;
if (H5Pset_fapl_ros3((hid_t)fapl_id, &instance) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1327,14 +1327,14 @@ done:
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close(JNIEnv *env, jclass clss, jlong fapl_id, jboolean evict_on_close)
{
- hbool_t evict_on_close_val = FALSE;
- herr_t retVal = FAIL;
+ bool evict_on_close_val = false;
+ herr_t retVal = FAIL;
UNUSED(clss);
- evict_on_close_val = (evict_on_close == JNI_TRUE) ? TRUE : FALSE;
+ evict_on_close_val = (evict_on_close == JNI_TRUE) ? true : false;
- if ((retVal = H5Pset_evict_on_close((hid_t)fapl_id, (hbool_t)evict_on_close_val)) < 0)
+ if ((retVal = H5Pset_evict_on_close((hid_t)fapl_id, (bool)evict_on_close_val)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -1349,15 +1349,15 @@ done:
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close(JNIEnv *env, jclass clss, jlong fapl_id)
{
- hbool_t evict_on_close_val = FALSE;
+ bool evict_on_close_val = false;
jboolean bval = JNI_FALSE;
UNUSED(clss);
- if (H5Pget_evict_on_close((hid_t)fapl_id, (hbool_t *)&evict_on_close_val) < 0)
+ if (H5Pget_evict_on_close((hid_t)fapl_id, (bool *)&evict_on_close_val) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- bval = (evict_on_close_val == TRUE) ? JNI_TRUE : JNI_FALSE;
+ bval = (evict_on_close_val == true) ? JNI_TRUE : JNI_FALSE;
done:
return bval;
@@ -1372,13 +1372,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id, jboolean use_file_locking,
jboolean ignore_when_disabled)
{
- hbool_t use_file_locking_val = TRUE;
- hbool_t ignore_when_disabled_val = TRUE;
+ bool use_file_locking_val = true;
+ bool ignore_when_disabled_val = true;
UNUSED(clss);
- use_file_locking_val = (use_file_locking == JNI_TRUE) ? TRUE : FALSE;
- ignore_when_disabled_val = (ignore_when_disabled == JNI_TRUE) ? TRUE : FALSE;
+ use_file_locking_val = (use_file_locking == JNI_TRUE) ? true : false;
+ ignore_when_disabled_val = (ignore_when_disabled == JNI_TRUE) ? true : false;
if (H5Pset_file_locking((hid_t)fapl_id, use_file_locking_val, ignore_when_disabled_val) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1395,8 +1395,8 @@ done:
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1use_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id)
{
- hbool_t use_file_locking_val = TRUE;
- hbool_t unused = TRUE;
+ bool use_file_locking_val = true;
+ bool unused = true;
jboolean bval = JNI_FALSE;
UNUSED(clss);
@@ -1404,7 +1404,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1use_1file_1locking(JNIEnv *env, jclass clss, jlong f
if (H5Pget_file_locking((hid_t)fapl_id, &use_file_locking_val, &unused) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- bval = (use_file_locking_val == TRUE) ? JNI_TRUE : JNI_FALSE;
+ bval = (use_file_locking_val == true) ? JNI_TRUE : JNI_FALSE;
done:
return bval;
@@ -1418,8 +1418,8 @@ done:
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1ignore_1disabled_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id)
{
- hbool_t ignore_when_disabled_val = TRUE;
- hbool_t unused = TRUE;
+ bool ignore_when_disabled_val = true;
+ bool unused = true;
jboolean bval = JNI_FALSE;
UNUSED(clss);
@@ -1427,7 +1427,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1ignore_1disabled_1file_1locking(JNIEnv *env, jclass
if (H5Pget_file_locking((hid_t)fapl_id, &unused, &ignore_when_disabled_val) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- bval = (ignore_when_disabled_val == TRUE) ? JNI_TRUE : JNI_FALSE;
+ bval = (ignore_when_disabled_val == true) ? JNI_TRUE : JNI_FALSE;
done:
return bval;
@@ -1492,7 +1492,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config(JNIEnv *env, jclass clss, jlong plist, j
UNUSED(clss);
- HDmemset(&cacheinfo, 0, sizeof(H5AC_cache_config_t));
+ memset(&cacheinfo, 0, sizeof(H5AC_cache_config_t));
if (NULL == (cls = ENVPTR->GetObjectClass(ENVONLY, cache_config)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -1530,14 +1530,14 @@ Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config(JNIEnv *env, jclass clss, jlong plist, j
if (j_str) {
PIN_JAVA_STRING(ENVONLY, j_str, str, NULL, "H5Pset_mdc_config: cache_config not pinned");
- HDstrncpy(cacheinfo.trace_file_name, str, H5AC__MAX_TRACE_FILE_NAME_LEN + 1);
+ strncpy(cacheinfo.trace_file_name, str, H5AC__MAX_TRACE_FILE_NAME_LEN + 1);
cacheinfo.trace_file_name[H5AC__MAX_TRACE_FILE_NAME_LEN] = '\0';
UNPIN_JAVA_STRING(ENVONLY, j_str, str);
str = NULL;
}
else
- HDmemset(cacheinfo.trace_file_name, 0, H5AC__MAX_TRACE_FILE_NAME_LEN + 1);
+ memset(cacheinfo.trace_file_name, 0, H5AC__MAX_TRACE_FILE_NAME_LEN + 1);
if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "evictions_enabled", "Z")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -1716,7 +1716,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config(JNIEnv *env, jclass clss, jlong plist)
UNUSED(clss);
- HDmemset(&cacheinfo, 0, sizeof(H5AC_cache_config_t));
+ memset(&cacheinfo, 0, sizeof(H5AC_cache_config_t));
cacheinfo.version = H5AC__CURR_CACHE_CONFIG_VERSION;
if ((status = H5Pget_mdc_config((hid_t)plist, &cacheinfo)) < 0)
@@ -1794,8 +1794,8 @@ Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options(JNIEnv *env, jclass clss, jlong fa
PIN_JAVA_STRING(ENVONLY, location, locStr, NULL, "H5Pset_mdc_log_options: location string not pinned");
- if ((retVal = H5Pset_mdc_log_options((hid_t)fapl_id, (hbool_t)is_enabled, locStr,
- (hbool_t)start_on_access)) < 0)
+ if ((retVal = H5Pset_mdc_log_options((hid_t)fapl_id, (bool)is_enabled, locStr, (bool)start_on_access)) <
+ 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -1814,8 +1814,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options(JNIEnv *env, jclass clss, jlong fa
{
jboolean isCopy;
jboolean *mdc_log_options_ptr = NULL;
- hbool_t is_enabled;
- hbool_t start_on_access;
+ bool is_enabled;
+ bool start_on_access;
ssize_t status = -1;
size_t location_size;
jsize arrLen;
@@ -1845,7 +1845,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options(JNIEnv *env, jclass clss, jlong fa
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: location_size is 0");
location_size++; /* add extra space for the null terminator */
- if (NULL == (lname = (char *)HDmalloc(sizeof(char) * location_size)))
+ if (NULL == (lname = (char *)malloc(sizeof(char) * location_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_mdc_log_options: memory allocation failed");
if ((status = H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, lname, &location_size,
@@ -1865,7 +1865,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options(JNIEnv *env, jclass clss, jlong fa
done:
if (lname)
- HDfree(lname);
+ free(lname);
if (mdc_log_options_ptr)
UNPIN_BOOL_ARRAY(ENVONLY, mdc_log_options, mdc_log_options_ptr, (status < 0) ? JNI_ABORT : 0);
diff --git a/java/src/jni/h5pFCPLImp.c b/java/src/jni/h5pFCPLImp.c
index 72c8869..9e6845d 100644
--- a/java/src/jni/h5pFCPLImp.c
+++ b/java/src/jni/h5pFCPLImp.c
@@ -294,7 +294,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy(JNIEnv *env, jclass clss, jlon
{
UNUSED(clss);
- if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (hbool_t)persist,
+ if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (bool)persist,
(hsize_t)threshold) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -325,7 +325,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy(JNIEnv *env, jclass clss, jlon
PIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, &isCopy,
"H5Pget_file_space: threshold not pinned");
- if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (hbool_t *)persistArray,
+ if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (bool *)persistArray,
(hsize_t *)thresholdArray)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -346,8 +346,8 @@ done:
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist(JNIEnv *env, jclass clss, jlong fcpl_id)
{
- hbool_t persist = FALSE;
- herr_t status = FAIL;
+ bool persist = false;
+ herr_t status = FAIL;
UNUSED(clss);
diff --git a/java/src/jni/h5pLAPLImp.c b/java/src/jni/h5pLAPLImp.c
index 81d99fa..2bf2812 100644
--- a/java/src/jni/h5pLAPLImp.c
+++ b/java/src/jni/h5pLAPLImp.c
@@ -128,7 +128,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix(JNIEnv *env, jclass clss, jlong lapl_i
if ((prefix_size = H5Pget_elink_prefix((hid_t)lapl_id, (char *)NULL, size)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (pre = (char *)HDmalloc(sizeof(char) * (size_t)prefix_size + 1)))
+ if (NULL == (pre = (char *)malloc(sizeof(char) * (size_t)prefix_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_elink_prefix: memory allocation failed");
if (H5Pget_elink_prefix((hid_t)lapl_id, (char *)pre, (size_t)prefix_size + 1) < 0)
@@ -146,7 +146,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix(JNIEnv *env, jclass clss, jlong lapl_i
done:
if (pre)
- HDfree(pre);
+ free(pre);
return (jlong)prefix_size;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix */
diff --git a/java/src/jni/h5pOCPLImp.c b/java/src/jni/h5pOCPLImp.c
index e287962..432fbbb 100644
--- a/java/src/jni/h5pOCPLImp.c
+++ b/java/src/jni/h5pOCPLImp.c
@@ -77,11 +77,11 @@ done:
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times(JNIEnv *env, jclass clss, jlong objplid, jboolean track_times)
{
- hbool_t track = FALSE;
+ bool track = false;
UNUSED(clss);
- track = (JNI_TRUE == track_times) ? 1 : 0;
+ track = (JNI_TRUE == track_times) ? true : false;
if (H5Pset_obj_track_times((hid_t)objplid, track) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -98,7 +98,7 @@ done:
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times(JNIEnv *env, jclass clss, jlong objplid)
{
- hbool_t track_times = FALSE;
+ bool track_times = false;
jboolean retVal = JNI_FALSE;
UNUSED(clss);
@@ -106,7 +106,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times(JNIEnv *env, jclass clss, jlong ob
if (H5Pget_obj_track_times((hid_t)objplid, &track_times) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- retVal = (track_times == TRUE) ? JNI_TRUE : JNI_FALSE;
+ retVal = (track_times == true) ? JNI_TRUE : JNI_FALSE;
done:
return retVal;
diff --git a/java/src/jni/h5plImp.c b/java/src/jni/h5plImp.c
index 2324402..9283777 100644
--- a/java/src/jni/h5plImp.c
+++ b/java/src/jni/h5plImp.c
@@ -216,7 +216,7 @@ Java_hdf_hdf5lib_H5_H5PLget(JNIEnv *env, jclass clss, jint idx)
if ((buf_size = H5PLget((unsigned)idx, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (aName = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5PLget: failed to allocate plugin name buffer");
if ((H5PLget((unsigned)idx, aName, (size_t)buf_size + 1)) < 0)
@@ -228,7 +228,7 @@ Java_hdf_hdf5lib_H5_H5PLget(JNIEnv *env, jclass clss, jint idx)
done:
if (aName)
- HDfree(aName);
+ free(aName);
return str;
} /* end Java_hdf_hdf5lib_H5_H5PLget */
diff --git a/java/src/jni/h5rImp.c b/java/src/jni/h5rImp.c
index 7b81e80..0e26f2a 100644
--- a/java/src/jni/h5rImp.c
+++ b/java/src/jni/h5rImp.c
@@ -47,7 +47,7 @@ Java_hdf_hdf5lib_H5_H5Rcreate_1object(JNIEnv *env, jclass clss, jlong loc_id, js
PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_object: reference name not pinned");
- if (NULL == (refBuf = HDcalloc(1, H5R_REF_BUF_SIZE)))
+ if (NULL == (refBuf = calloc(1, H5R_REF_BUF_SIZE)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_object: failed to allocate reference buffer");
H5R_ref_t loc_ref;
@@ -55,7 +55,7 @@ Java_hdf_hdf5lib_H5_H5Rcreate_1object(JNIEnv *env, jclass clss, jlong loc_id, js
H5_LIBRARY_ERROR(ENVONLY);
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(refBuf, &loc_ref, H5R_REF_BUF_SIZE);
+ memcpy(refBuf, &loc_ref, H5R_REF_BUF_SIZE);
if (NULL == (ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -67,7 +67,7 @@ done:
if (refName)
UNPIN_JAVA_STRING(ENVONLY, name, refName);
if (refBuf)
- HDfree(refBuf);
+ free(refBuf);
return ref;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate_1object */
@@ -93,7 +93,7 @@ Java_hdf_hdf5lib_H5_H5Rcreate_1region(JNIEnv *env, jclass clss, jlong loc_id, js
PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_region: reference name not pinned");
- if (NULL == (refBuf = HDcalloc(1, H5R_REF_BUF_SIZE)))
+ if (NULL == (refBuf = calloc(1, H5R_REF_BUF_SIZE)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_region: failed to allocate reference buffer");
H5R_ref_t loc_ref;
@@ -101,7 +101,7 @@ Java_hdf_hdf5lib_H5_H5Rcreate_1region(JNIEnv *env, jclass clss, jlong loc_id, js
H5_LIBRARY_ERROR(ENVONLY);
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(refBuf, &loc_ref, H5R_REF_BUF_SIZE);
+ memcpy(refBuf, &loc_ref, H5R_REF_BUF_SIZE);
if (NULL == (ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -113,7 +113,7 @@ done:
if (refName)
UNPIN_JAVA_STRING(ENVONLY, name, refName);
if (refBuf)
- HDfree(refBuf);
+ free(refBuf);
return ref;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate_1region */
@@ -144,7 +144,7 @@ Java_hdf_hdf5lib_H5_H5Rcreate_1attr(JNIEnv *env, jclass clss, jlong loc_id, jstr
PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_attr: reference name not pinned");
- if (NULL == (refBuf = HDcalloc(1, H5R_REF_BUF_SIZE)))
+ if (NULL == (refBuf = calloc(1, H5R_REF_BUF_SIZE)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_attr: failed to allocate reference buffer");
H5R_ref_t loc_ref;
@@ -152,7 +152,7 @@ Java_hdf_hdf5lib_H5_H5Rcreate_1attr(JNIEnv *env, jclass clss, jlong loc_id, jstr
H5_LIBRARY_ERROR(ENVONLY);
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(refBuf, &loc_ref, H5R_REF_BUF_SIZE);
+ memcpy(refBuf, &loc_ref, H5R_REF_BUF_SIZE);
if (NULL == (ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -166,7 +166,7 @@ done:
if (refName)
UNPIN_JAVA_STRING(ENVONLY, name, refName);
if (refBuf)
- HDfree(refBuf);
+ free(refBuf);
return ref;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate_1attr */
@@ -199,7 +199,7 @@ Java_hdf_hdf5lib_H5_H5Rdestroy(JNIEnv *env, jclass clss, jbyteArray ref)
H5R_ref_t loc_ref;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
if ((status = H5Rdestroy(&loc_ref)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -237,7 +237,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1type(JNIEnv *env, jclass clss, jbyteArray ref)
H5R_ref_t loc_ref;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
if ((ref_type = H5Rget_type(&loc_ref)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -289,8 +289,8 @@ Java_hdf_hdf5lib_H5_H5Requal(JNIEnv *env, jclass clss, jbyteArray ref1, jbyteArr
H5R_ref_t loc_ref1, loc_ref2;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_ref1, refBuf1, H5R_REF_BUF_SIZE);
- HDmemcpy(&loc_ref2, refBuf2, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref1, refBuf1, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref2, refBuf2, H5R_REF_BUF_SIZE);
if ((bval = H5Requal(&loc_ref1, &loc_ref2)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -334,19 +334,19 @@ Java_hdf_hdf5lib_H5_H5Rcopy(JNIEnv *env, jclass clss, jbyteArray src_ref)
PIN_BYTE_ARRAY(ENVONLY, src_ref, src_refBuf, &isCopy, "H5Rcopy: src reference buffer not pinned");
- if (NULL == (dst_refBuf = HDcalloc(1, H5R_REF_BUF_SIZE)))
+ if (NULL == (dst_refBuf = calloc(1, H5R_REF_BUF_SIZE)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_attr: failed to allocate dst reference buffer");
H5R_ref_t loc_src_ref, loc_dst_ref;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_src_ref, src_refBuf, H5R_REF_BUF_SIZE);
- HDmemcpy(&loc_dst_ref, dst_refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_src_ref, src_refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_dst_ref, dst_refBuf, H5R_REF_BUF_SIZE);
if ((status = H5Rcopy(&loc_src_ref, &loc_dst_ref)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- HDmemcpy(dst_refBuf, &loc_dst_ref, H5R_REF_BUF_SIZE);
+ memcpy(dst_refBuf, &loc_dst_ref, H5R_REF_BUF_SIZE);
if (NULL == (dst_ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -358,7 +358,7 @@ done:
if (src_refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, src_ref, src_refBuf, (status < 0) ? JNI_ABORT : 0);
if (dst_refBuf)
- HDfree(dst_refBuf);
+ free(dst_refBuf);
return dst_ref;
} /* end Java_hdf_hdf5lib_H5_H5Rcopy */
@@ -391,7 +391,7 @@ Java_hdf_hdf5lib_H5__1H5Ropen_1object(JNIEnv *env, jclass clss, jbyteArray ref,
H5R_ref_t loc_ref;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
if ((retVal = H5Ropen_object(&loc_ref, (hid_t)rapl_id, (hid_t)oapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -431,7 +431,7 @@ Java_hdf_hdf5lib_H5__1H5Ropen_1region(JNIEnv *env, jclass clss, jbyteArray ref,
H5R_ref_t loc_ref;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
if ((retVal = H5Ropen_region(&loc_ref, (hid_t)rapl_id, (hid_t)oapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -471,7 +471,7 @@ Java_hdf_hdf5lib_H5__1H5Ropen_1attr(JNIEnv *env, jclass clss, jbyteArray ref, jl
H5R_ref_t loc_ref;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
if ((retVal = H5Ropen_attr(&loc_ref, (hid_t)rapl_id, (hid_t)aapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -506,7 +506,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1obj_1type3(JNIEnv *env, jclass clss, jbyteArray ref,
H5R_ref_t loc_ref;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
if ((retVal = H5Rget_obj_type3(&loc_ref, (hid_t)rapl_id, &object_info)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -546,13 +546,13 @@ Java_hdf_hdf5lib_H5_H5Rget_1file_1name(JNIEnv *env, jclass clss, jbyteArray ref)
H5R_ref_t loc_ref;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
/* Get the length of the name */
if ((buf_size = H5Rget_file_name(&loc_ref, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (namePtr = HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (namePtr = malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_file_name: malloc failed");
if ((check_size = H5Rget_file_name(&loc_ref, namePtr, (size_t)buf_size + 1)) < 0)
@@ -564,7 +564,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1file_1name(JNIEnv *env, jclass clss, jbyteArray ref)
done:
if (namePtr)
- HDfree(namePtr);
+ free(namePtr);
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (check_size < 0) ? JNI_ABORT : 0);
@@ -596,13 +596,13 @@ Java_hdf_hdf5lib_H5_H5Rget_1obj_1name(JNIEnv *env, jclass clss, jbyteArray ref,
H5R_ref_t loc_ref;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
/* Get the length of the name */
if ((buf_size = H5Rget_obj_name(&loc_ref, (hid_t)rapl_id, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (namePtr = HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (namePtr = malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_obj_name: malloc failed");
if ((check_size = H5Rget_obj_name(&loc_ref, (hid_t)rapl_id, namePtr, (size_t)buf_size + 1)) < 0)
@@ -614,7 +614,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1obj_1name(JNIEnv *env, jclass clss, jbyteArray ref,
done:
if (namePtr)
- HDfree(namePtr);
+ free(namePtr);
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (check_size < 0) ? JNI_ABORT : 0);
@@ -646,13 +646,13 @@ Java_hdf_hdf5lib_H5_H5Rget_1attr_1name(JNIEnv *env, jclass clss, jbyteArray ref)
H5R_ref_t loc_ref;
HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
- HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
+ memcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);
/* Get the length of the name */
if ((buf_size = H5Rget_attr_name(&loc_ref, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (namePtr = HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (namePtr = malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_attr_name: malloc failed");
if ((check_size = H5Rget_attr_name(&loc_ref, namePtr, (size_t)buf_size + 1)) < 0)
@@ -664,7 +664,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1attr_1name(JNIEnv *env, jclass clss, jbyteArray ref)
done:
if (namePtr)
- HDfree(namePtr);
+ free(namePtr);
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (check_size < 0) ? JNI_ABORT : 0);
@@ -921,7 +921,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1name(JNIEnv *env, jclass clss, jlong loc_id, jint re
PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_name: reference buffer not pinned");
- if (NULL == (aName = HDmalloc(sizeof(char) * (size_t)size + 1)))
+ if (NULL == (aName = malloc(sizeof(char) * (size_t)size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer");
if ((ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, aName, (size_t)size + 1)) <
@@ -937,7 +937,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1name(JNIEnv *env, jclass clss, jlong loc_id, jint re
done:
if (aName)
- HDfree(aName);
+ free(aName);
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);
@@ -985,7 +985,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1name_1string(JNIEnv *env, jclass clss, jlong loc_id,
if ((buf_size = H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (aName = HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (aName = malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer");
if ((ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, aName,
@@ -998,7 +998,7 @@ Java_hdf_hdf5lib_H5_H5Rget_1name_1string(JNIEnv *env, jclass clss, jlong loc_id,
done:
if (aName)
- HDfree(aName);
+ free(aName);
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);
diff --git a/java/src/jni/h5sImp.c b/java/src/jni/h5sImp.c
index ca1f75c..f0103ed 100644
--- a/java/src/jni/h5sImp.c
+++ b/java/src/jni/h5sImp.c
@@ -95,7 +95,7 @@ Java_hdf_hdf5lib_H5__1H5Screate_1simple(JNIEnv *env, jclass clss, jint rank, jlo
PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Screate_simple: dims not pinned");
- if (NULL == (sa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ if (NULL == (sa = lp = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Screate_simple: failed to allocate dims buffer");
jlp = (jlong *)dimsP;
@@ -112,7 +112,7 @@ Java_hdf_hdf5lib_H5__1H5Screate_1simple(JNIEnv *env, jclass clss, jint rank, jlo
else {
PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Screate_simple: maxdims not pinned");
- if (NULL == (msa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ if (NULL == (msa = lp = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Screate_simple: failed to allocate maxdims buffer");
jlp = (jlong *)maxdimsP;
@@ -128,11 +128,11 @@ Java_hdf_hdf5lib_H5__1H5Screate_1simple(JNIEnv *env, jclass clss, jint rank, jlo
done:
if (msa)
- HDfree(msa);
+ free(msa);
if (maxdimsP)
UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, JNI_ABORT);
if (sa)
- HDfree(sa);
+ free(sa);
if (dimsP)
UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, JNI_ABORT);
@@ -191,7 +191,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements(JNIEnv *env, jclass clss, jlong space_id
PIN_LONG_ARRAY(ENVONLY, coords, P, &isCopy, "H5Sselect_elements: coords not pinned");
- if (NULL == (sa = (hssize_t *)HDmalloc((size_t)num_elemn * 2 * sizeof(hssize_t))))
+ if (NULL == (sa = (hssize_t *)malloc((size_t)num_elemn * 2 * sizeof(hssize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer");
for (i = 0; i < (num_elemn * 2); i++) {
@@ -203,7 +203,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements(JNIEnv *env, jclass clss, jlong space_id
done:
if (sa)
- HDfree(sa);
+ free(sa);
if (P)
UNPIN_LONG_ARRAY(ENVONLY, coords, P, JNI_ABORT);
@@ -244,7 +244,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements(JNIEnv *env, jclass clss, jlong space_id
nlongs = (int)((size_t)size / sizeof(jlong));
- if (NULL == (lp = (hsize_t *)HDmalloc((size_t)nlongs * sizeof(hsize_t))))
+ if (NULL == (lp = (hsize_t *)malloc((size_t)nlongs * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer");
jlp = (jlong *)P;
@@ -261,7 +261,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements(JNIEnv *env, jclass clss, jlong space_id
done:
if (llp)
- HDfree(llp);
+ free(llp);
if (P)
UNPIN_BYTE_ARRAY(ENVONLY, coords, P, JNI_ABORT);
@@ -435,7 +435,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims(JNIEnv *env, jclass clss, jlong
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: dims array length < 0");
}
- if (NULL == (sa = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ if (NULL == (sa = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate dimension buffer");
}
@@ -456,7 +456,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims(JNIEnv *env, jclass clss, jlong
else if (mrank != rank)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims rank not same as dims");
- if (NULL == (msa = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ if (NULL == (msa = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"H5Sget_simple_extent_dims: failed to allocate maximum dimension buffer");
}
@@ -478,11 +478,11 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims(JNIEnv *env, jclass clss, jlong
done:
if (msa)
- HDfree(msa);
+ free(msa);
if (maxdimsP)
UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, (status < 0) ? JNI_ABORT : 0);
if (sa)
- HDfree(sa);
+ free(sa);
if (dimsP)
UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, (status < 0) ? JNI_ABORT : 0);
@@ -555,7 +555,7 @@ Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple(JNIEnv *env, jclass clss, jlong space
PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Sset_extent_simple: dims not pinned");
- if (NULL == (sa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ if (NULL == (sa = lp = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate dimension buffer");
jlp = (jlong *)dimsP;
@@ -572,7 +572,7 @@ Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple(JNIEnv *env, jclass clss, jlong space
else {
PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Sset_extent_simple: maxdims not pinned");
- if (NULL == (msa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ if (NULL == (msa = lp = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"H5Sset_extent_simple: failed to allocate maximum dimension buffer");
@@ -589,11 +589,11 @@ Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple(JNIEnv *env, jclass clss, jlong space
done:
if (msa)
- HDfree(msa);
+ free(msa);
if (maxdimsP)
UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, JNI_ABORT);
if (sa)
- HDfree(sa);
+ free(sa);
if (dimsP)
UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, JNI_ABORT);
@@ -650,7 +650,7 @@ Java_hdf_hdf5lib_H5_H5Soffset_1simple(JNIEnv *env, jclass clss, jlong space_id,
rank = (size_t)i / sizeof(jlong);
- if (NULL == (sa = lp = (hssize_t *)HDmalloc((size_t)rank * sizeof(hssize_t))))
+ if (NULL == (sa = lp = (hssize_t *)malloc((size_t)rank * sizeof(hssize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Soffset_simple: failed to allocate offset buffer");
jlp = (jlong *)P;
@@ -670,7 +670,7 @@ Java_hdf_hdf5lib_H5_H5Soffset_1simple(JNIEnv *env, jclass clss, jlong space_id,
done:
if (sa)
- HDfree(sa);
+ free(sa);
if (P)
UNPIN_BYTE_ARRAY(ENVONLY, offset, P, JNI_ABORT);
@@ -775,7 +775,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab(JNIEnv *env, jclass clss, jlong space_i
PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_hyperslab: start not pinned");
- if (NULL == (strt = lp = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t))))
+ if (NULL == (strt = lp = (hsize_t *)malloc((size_t)start_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate start buffer");
jlp = (jlong *)startP;
@@ -787,7 +787,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab(JNIEnv *env, jclass clss, jlong space_i
PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sselect_hyperslab: count not pinned");
- if (NULL == (cnt = lp = (hsize_t *)HDmalloc((size_t)count_rank * sizeof(hsize_t))))
+ if (NULL == (cnt = lp = (hsize_t *)malloc((size_t)count_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate count buffer");
jlp = (jlong *)countP;
@@ -812,7 +812,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab(JNIEnv *env, jclass clss, jlong space_i
PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sselect_hyperslab: stride not pinned");
- if (NULL == (strd = lp = (hsize_t *)HDmalloc((size_t)stride_rank * sizeof(hsize_t))))
+ if (NULL == (strd = lp = (hsize_t *)malloc((size_t)stride_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate stride buffer");
jlp = (jlong *)strideP;
@@ -838,7 +838,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab(JNIEnv *env, jclass clss, jlong space_i
PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sselect_hyperslab: block not pinned");
- if (NULL == (blk = lp = (hsize_t *)HDmalloc((size_t)block_rank * sizeof(hsize_t))))
+ if (NULL == (blk = lp = (hsize_t *)malloc((size_t)block_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate block buffer");
jlp = (jlong *)blockP;
@@ -855,19 +855,19 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab(JNIEnv *env, jclass clss, jlong space_i
done:
if (blk)
- HDfree(blk);
+ free(blk);
if (blockP)
UNPIN_LONG_ARRAY(ENVONLY, block, blockP, JNI_ABORT);
if (strd)
- HDfree(strd);
+ free(strd);
if (strideP)
UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, JNI_ABORT);
if (cnt)
- HDfree(cnt);
+ free(cnt);
if (countP)
UNPIN_LONG_ARRAY(ENVONLY, count, countP, JNI_ABORT);
if (strt)
- HDfree(strt);
+ free(strt);
if (startP)
UNPIN_LONG_ARRAY(ENVONLY, start, startP, JNI_ABORT);
@@ -972,7 +972,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist(JNIEnv *env, jclass clss, j
PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_hyper_blocklist: buffer not pinned");
buf_size = (size_t)numblocks * (size_t)2 * (size_t)rank * sizeof(hsize_t);
- if (NULL == (ba = (hsize_t *)HDmalloc(buf_size)))
+ if (NULL == (ba = (hsize_t *)malloc(buf_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"H5Sget_select_hyper_blocklist: failed to allocate block list buffer");
@@ -986,7 +986,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist(JNIEnv *env, jclass clss, j
done:
if (ba)
- HDfree(ba);
+ free(ba);
if (bufP)
UNPIN_LONG_ARRAY(ENVONLY, buf, bufP, (status < 0) ? JNI_ABORT : 0);
@@ -1030,7 +1030,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist(JNIEnv *env, jclass clss, jl
PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_elem_pointlist: buffer not pinned");
- if (NULL == (ba = (hsize_t *)HDmalloc(((size_t)numpoints * (size_t)rank) * sizeof(hsize_t))))
+ if (NULL == (ba = (hsize_t *)malloc(((size_t)numpoints * (size_t)rank) * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: failed to allocate point list buffer");
if ((status = H5Sget_select_elem_pointlist((hid_t)spaceid, (hsize_t)startpoint, (hsize_t)numpoints,
@@ -1043,7 +1043,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist(JNIEnv *env, jclass clss, jl
done:
if (ba)
- HDfree(ba);
+ free(ba);
if (bufP)
UNPIN_LONG_ARRAY(ENVONLY, buf, bufP, (status < 0) ? JNI_ABORT : 0);
@@ -1081,12 +1081,12 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds(JNIEnv *env, jclass clss, jlong space
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: start array length < 0");
}
- if (NULL == (strt = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ if (NULL == (strt = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate start buffer");
PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sget_select_bounds: end not pinned");
- if (NULL == (en = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ if (NULL == (en = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate end buffer");
if ((status = H5Sget_select_bounds((hid_t)spaceid, (hsize_t *)strt, (hsize_t *)en)) < 0)
@@ -1099,11 +1099,11 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds(JNIEnv *env, jclass clss, jlong space
done:
if (en)
- HDfree(en);
+ free(en);
if (endP)
UNPIN_LONG_ARRAY(ENVONLY, end, endP, (status < 0) ? JNI_ABORT : 0);
if (strt)
- HDfree(strt);
+ free(strt);
if (startP)
UNPIN_LONG_ARRAY(ENVONLY, start, startP, (status < 0) ? JNI_ABORT : 0);
@@ -1134,7 +1134,7 @@ Java_hdf_hdf5lib_H5_H5Sencode(JNIEnv *env, jclass clss, jlong obj_id)
if (buf_size == 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sencode: buf_size = 0");
- if (NULL == (bufPtr = (unsigned char *)HDcalloc((size_t)1, buf_size)))
+ if (NULL == (bufPtr = (unsigned char *)calloc((size_t)1, buf_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sencode: failed to allocate encoding buffer");
if ((status = H5Sencode2((hid_t)obj_id, bufPtr, &buf_size, H5P_DEFAULT)) < 0)
@@ -1148,7 +1148,7 @@ Java_hdf_hdf5lib_H5_H5Sencode(JNIEnv *env, jclass clss, jlong obj_id)
done:
if (bufPtr)
- HDfree(bufPtr);
+ free(bufPtr);
return returnedArray;
} /* end Java_hdf_hdf5lib_H5_H5Sencode */
@@ -1243,7 +1243,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab(JNIEnv *env, jclass clss, jlong s
PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sget_regular_hyperslab: start not pinned");
- if (NULL == (strt = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t))))
+ if (NULL == (strt = (hsize_t *)malloc((size_t)start_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate start buffer");
}
@@ -1263,7 +1263,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab(JNIEnv *env, jclass clss, jlong s
PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sget_regular_hyperslab: stride not pinned");
- if (NULL == (strd = (hsize_t *)HDmalloc((size_t)stride_rank * sizeof(hsize_t))))
+ if (NULL == (strd = (hsize_t *)malloc((size_t)stride_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate stride buffer");
}
@@ -1283,7 +1283,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab(JNIEnv *env, jclass clss, jlong s
PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sget_regular_hyperslab: count not pinned");
- if (NULL == (cnt = (hsize_t *)HDmalloc((size_t)count_rank * sizeof(hsize_t))))
+ if (NULL == (cnt = (hsize_t *)malloc((size_t)count_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate count buffer");
}
@@ -1303,7 +1303,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab(JNIEnv *env, jclass clss, jlong s
PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sget_regular_hyperslab: block not pinned");
- if (NULL == (blk = (hsize_t *)HDmalloc((size_t)block_rank * sizeof(hsize_t))))
+ if (NULL == (blk = (hsize_t *)malloc((size_t)block_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate block buffer");
}
@@ -1320,19 +1320,19 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab(JNIEnv *env, jclass clss, jlong s
done:
if (blk)
- HDfree(blk);
+ free(blk);
if (blockP)
UNPIN_LONG_ARRAY(ENVONLY, block, blockP, (status < 0) ? JNI_ABORT : 0);
if (cnt)
- HDfree(cnt);
+ free(cnt);
if (countP)
UNPIN_LONG_ARRAY(ENVONLY, count, countP, (status < 0) ? JNI_ABORT : 0);
if (strd)
- HDfree(strd);
+ free(strd);
if (strideP)
UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, (status < 0) ? JNI_ABORT : 0);
if (strt)
- HDfree(strt);
+ free(strt);
if (startP)
UNPIN_LONG_ARRAY(ENVONLY, start, startP, (status < 0) ? JNI_ABORT : 0);
@@ -1417,7 +1417,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1adjust(JNIEnv *env, jclass clss, jlong space_id,
PIN_LONG_ARRAY(ENVONLY, offset, offsetP, &isCopy, "H5Sselect_adjust: offset not pinned");
- if (NULL == (offst = (hssize_t *)HDmalloc((size_t)offset_rank * sizeof(hsize_t))))
+ if (NULL == (offst = (hssize_t *)malloc((size_t)offset_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_adjust: failed to allocate offset buffer");
}
@@ -1430,7 +1430,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1adjust(JNIEnv *env, jclass clss, jlong space_id,
done:
if (offst)
- HDfree(offst);
+ free(offst);
if (offsetP)
UNPIN_LONG_ARRAY(ENVONLY, offset, offsetP, (status < 0) ? JNI_ABORT : 0);
@@ -1477,7 +1477,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block(JNIEnv *env, jclass clss, jlong
PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_intersect_block: start not pinned");
- if (NULL == (strt = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t))))
+ if (NULL == (strt = (hsize_t *)malloc((size_t)start_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_intersect_block: failed to allocate start buffer");
}
@@ -1497,7 +1497,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block(JNIEnv *env, jclass clss, jlong
PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sselect_intersect_block: end not pinned");
- if (NULL == (nd = (hsize_t *)HDmalloc((size_t)end_rank * sizeof(hsize_t))))
+ if (NULL == (nd = (hsize_t *)malloc((size_t)end_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_intersect_block: failed to allocate end buffer");
}
@@ -1513,11 +1513,11 @@ Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block(JNIEnv *env, jclass clss, jlong
done:
if (strt)
- HDfree(strt);
+ free(strt);
if (startP)
UNPIN_LONG_ARRAY(ENVONLY, start, startP, (bval < 0) ? JNI_ABORT : 0);
if (nd)
- HDfree(nd);
+ free(nd);
if (endP)
UNPIN_LONG_ARRAY(ENVONLY, end, endP, (bval < 0) ? JNI_ABORT : 0);
@@ -1584,7 +1584,7 @@ Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *env, jclass clss, jlong space_
PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Scombine_hyperslab: start not pinned");
- if (NULL == (strt = lp = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t))))
+ if (NULL == (strt = lp = (hsize_t *)malloc((size_t)start_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate start buffer");
jlp = (jlong *)startP;
@@ -1596,7 +1596,7 @@ Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *env, jclass clss, jlong space_
PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Scombine_hyperslab: count not pinned");
- if (NULL == (cnt = lp = (hsize_t *)HDmalloc((size_t)count_rank * sizeof(hsize_t))))
+ if (NULL == (cnt = lp = (hsize_t *)malloc((size_t)count_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate count buffer");
jlp = (jlong *)countP;
@@ -1621,7 +1621,7 @@ Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *env, jclass clss, jlong space_
PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Scombine_hyperslab: stride not pinned");
- if (NULL == (strd = lp = (hsize_t *)HDmalloc((size_t)stride_rank * sizeof(hsize_t))))
+ if (NULL == (strd = lp = (hsize_t *)malloc((size_t)stride_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate stride buffer");
jlp = (jlong *)strideP;
@@ -1647,7 +1647,7 @@ Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *env, jclass clss, jlong space_
PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Scombine_hyperslab: block not pinned");
- if (NULL == (blk = lp = (hsize_t *)HDmalloc((size_t)block_rank * sizeof(hsize_t))))
+ if (NULL == (blk = lp = (hsize_t *)malloc((size_t)block_rank * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate block buffer");
jlp = (jlong *)blockP;
@@ -1664,19 +1664,19 @@ Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *env, jclass clss, jlong space_
done:
if (blk)
- HDfree(blk);
+ free(blk);
if (blockP)
UNPIN_LONG_ARRAY(ENVONLY, block, blockP, JNI_ABORT);
if (strd)
- HDfree(strd);
+ free(strd);
if (strideP)
UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, JNI_ABORT);
if (cnt)
- HDfree(cnt);
+ free(cnt);
if (countP)
UNPIN_LONG_ARRAY(ENVONLY, count, countP, JNI_ABORT);
if (strt)
- HDfree(strt);
+ free(strt);
if (startP)
UNPIN_LONG_ARRAY(ENVONLY, start, startP, JNI_ABORT);
diff --git a/java/src/jni/h5tImp.c b/java/src/jni/h5tImp.c
index b4fc817..60de0c3 100644
--- a/java/src/jni/h5tImp.c
+++ b/java/src/jni/h5tImp.c
@@ -1189,7 +1189,7 @@ Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int(JNIEnv *env, jclass clss, jlong type_id
if (size <= 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof_int: name size < 0");
- if (NULL == (nameP = (char *)HDmalloc(sizeof(char) * (size_t)size)))
+ if (NULL == (nameP = (char *)malloc(sizeof(char) * (size_t)size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tenum_nameof_int: failed to allocate name buffer");
PIN_INT_ARRAY(ENVONLY, value, intP, &isCopy, "H5Tenum_nameof_int: value not pinned");
@@ -1208,7 +1208,7 @@ done:
if (intP)
UNPIN_INT_ARRAY(ENVONLY, value, intP, JNI_ABORT);
if (nameP)
- HDfree(nameP);
+ free(nameP);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int */
@@ -1234,7 +1234,7 @@ Java_hdf_hdf5lib_H5_H5Tenum_1nameof(JNIEnv *env, jclass clss, jlong type_id, jby
if (NULL == value)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof: value is NULL");
- if (NULL == (nameP = (char *)HDmalloc(sizeof(char) * (size_t)size)))
+ if (NULL == (nameP = (char *)malloc(sizeof(char) * (size_t)size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tenum_nameof: failed to allocate name buffer");
PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Tenum_nameof: value not pinned");
@@ -1250,7 +1250,7 @@ done:
if (byteP)
UNPIN_BYTE_ARRAY(ENVONLY, value, byteP, JNI_ABORT);
if (nameP)
- HDfree(nameP);
+ free(nameP);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1nameof */
@@ -1432,7 +1432,7 @@ Java_hdf_hdf5lib_H5_H5Tget_1array_1dims(JNIEnv *env, jclass clss, jlong type_id,
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_array_dims: dims array length < 0");
}
- if (NULL == (cdims = (hsize_t *)HDmalloc((size_t)dlen * sizeof(hsize_t))))
+ if (NULL == (cdims = (hsize_t *)malloc((size_t)dlen * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tget_array_dims: failed to allocate dimension buffer");
if ((ndims = H5Tget_array_dims2((hid_t)type_id, cdims)) < 0)
@@ -1444,7 +1444,7 @@ Java_hdf_hdf5lib_H5_H5Tget_1array_1dims(JNIEnv *env, jclass clss, jlong type_id,
done:
if (cdims)
- HDfree(cdims);
+ free(cdims);
if (dimsP)
UNPIN_INT_ARRAY(ENVONLY, dims, dimsP, (ndims < 0) ? JNI_ABORT : 0);
@@ -1572,7 +1572,7 @@ Java_hdf_hdf5lib_H5__1H5Tarray_1create2(JNIEnv *env, jclass clss, jlong base_id,
if (dlen != rank)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_create: dimension array length != array rank");
- if (NULL == (cdims = (hsize_t *)HDmalloc((size_t)dlen * sizeof(hsize_t))))
+ if (NULL == (cdims = (hsize_t *)malloc((size_t)dlen * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tarray_create: failed to allocate dimension buffer");
for (i = 0; i < (size_t)dlen; i++) {
@@ -1584,7 +1584,7 @@ Java_hdf_hdf5lib_H5__1H5Tarray_1create2(JNIEnv *env, jclass clss, jlong base_id,
done:
if (cdims)
- HDfree(cdims);
+ free(cdims);
if (dimsP)
UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, (retVal < 0) ? JNI_ABORT : 0);
@@ -1618,7 +1618,7 @@ Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2(JNIEnv *env, jclass clss, jlong type_id
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_get_dims2: dims array length < 0");
}
- if (NULL == (cdims = (hsize_t *)HDmalloc((size_t)dlen * sizeof(hsize_t))))
+ if (NULL == (cdims = (hsize_t *)malloc((size_t)dlen * sizeof(hsize_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tarray_get_dims2: failed to allocate dimension buffer");
if ((ndims = H5Tget_array_dims2((hid_t)type_id, (hsize_t *)cdims)) < 0)
@@ -1630,7 +1630,7 @@ Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2(JNIEnv *env, jclass clss, jlong type_id
done:
if (cdims)
- HDfree(cdims);
+ free(cdims);
if (dimsP)
UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, (ndims < 0) ? JNI_ABORT : 0);
diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c
index 56708a8..9f0117a 100644
--- a/java/src/jni/h5util.c
+++ b/java/src/jni/h5util.c
@@ -98,10 +98,10 @@ h5str_array_free(char **strs, size_t len)
for (i = 0; i < len; i++) {
if (strs[i])
- HDfree(strs[i]);
+ free(strs[i]);
} /* for (i=0; i<n; i++)*/
- HDfree(strs);
+ free(strs);
} /* end h5str_array_free */
/** allocate a new str with given length */
@@ -109,7 +109,7 @@ void
h5str_new(h5str_t *str, size_t len)
{
if (str && len > 0) {
- str->s = (char *)HDmalloc(len);
+ str->s = (char *)malloc(len);
str->max = len;
str->s[0] = '\0';
} /* end if */
@@ -120,8 +120,8 @@ void
h5str_free(h5str_t *str)
{
if (str && str->max > 0) {
- HDfree(str->s);
- HDmemset(str, 0, sizeof(h5str_t));
+ free(str->s);
+ memset(str, 0, sizeof(h5str_t));
} /* end if */
} /* end h5str_free */
@@ -137,15 +137,15 @@ h5str_resize(h5str_t *str, size_t new_len)
if (!str || new_len <= 0 || str->max == new_len)
return;
- if (NULL == (new_str = (char *)HDmalloc(new_len)))
+ if (NULL == (new_str = (char *)malloc(new_len)))
return;
if (new_len > str->max) /* increase memory */
- HDstrcpy(new_str, str->s);
+ strcpy(new_str, str->s);
else
- HDstrncpy(new_str, str->s, new_len - 1);
+ strncpy(new_str, str->s, new_len - 1);
- HDfree(str->s);
+ free(str->s);
str->s = new_str;
str->max = new_len;
} /* end h5str_resize */
@@ -164,13 +164,13 @@ h5str_append(h5str_t *str, const char *cstr)
else if (!cstr)
return str->s;
- len = HDstrlen(str->s) + HDstrlen(cstr);
+ len = strlen(str->s) + strlen(cstr);
while (len >= str->max) /* not enough to hold the new string, double the space */
{
h5str_resize(str, str->max * 2);
}
- return HDstrcat(str->s, cstr);
+ return strcat(str->s, cstr);
} /* end h5str_append */
/*
@@ -213,38 +213,38 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
/* Build default formats for long long types */
if (!fmt_llong[0]) {
- if (HDsnprintf(fmt_llong, sizeof(fmt_llong), "%%lld") < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: HDsnprintf failure");
- if (HDsnprintf(fmt_ullong, sizeof(fmt_ullong), "%%llu") < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: HDsnprintf failure");
+ if (snprintf(fmt_llong, sizeof(fmt_llong), "%%lld") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: snprintf failure");
+ if (snprintf(fmt_ullong, sizeof(fmt_ullong), "%%llu") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: snprintf failure");
} /* end if */
switch (tclass) {
case H5T_FLOAT: {
- token = HDstrtok(this_str, delimiter);
+ token = strtok(this_str, delimiter);
switch (typeSize) {
case sizeof(float): {
float tmp_float = 0.0f;
- HDsscanf(token, "%f", &tmp_float);
- HDmemcpy(cptr, &tmp_float, sizeof(float));
+ sscanf(token, "%f", &tmp_float);
+ memcpy(cptr, &tmp_float, sizeof(float));
break;
}
case sizeof(double): {
double tmp_double = 0.0;
- HDsscanf(token, "%lf", &tmp_double);
- HDmemcpy(cptr, &tmp_double, sizeof(double));
+ sscanf(token, "%lf", &tmp_double);
+ memcpy(cptr, &tmp_double, sizeof(double));
break;
}
#if H5_SIZEOF_LONG_DOUBLE != H5_SIZEOF_DOUBLE
case sizeof(long double): {
long double tmp_ldouble = 0.0;
- HDsscanf(token, "%Lg", &tmp_ldouble);
- HDmemcpy(cptr, &tmp_ldouble, sizeof(long double));
+ sscanf(token, "%Lg", &tmp_ldouble);
+ memcpy(cptr, &tmp_ldouble, sizeof(long double));
break;
}
#endif
@@ -262,10 +262,10 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
}
case H5T_STRING: {
- size_t len = HDstrlen(this_str);
+ size_t len = strlen(this_str);
if (len > 0) {
- HDstrncpy(cptr, this_str, typeSize);
+ strncpy(cptr, this_str, typeSize);
cptr[typeSize - 1] = '\0';
retVal = typeSize;
@@ -283,7 +283,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
if (H5T_SGN_ERROR == (nsign = H5Tget_sign(tid)))
H5_LIBRARY_ERROR(ENVONLY);
- token = HDstrtok(this_str, delimiter);
+ token = strtok(this_str, delimiter);
switch (typeSize) {
case sizeof(char): {
@@ -291,12 +291,12 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
signed char tmp_char = 0;
if (H5T_SGN_NONE == nsign) {
- HDsscanf(token, "%hhu", &tmp_uchar);
- HDmemcpy(cptr, &tmp_uchar, sizeof(unsigned char));
+ sscanf(token, "%hhu", &tmp_uchar);
+ memcpy(cptr, &tmp_uchar, sizeof(unsigned char));
}
else {
- HDsscanf(token, "%hhd", &tmp_char);
- HDmemcpy(cptr, &tmp_char, sizeof(char));
+ sscanf(token, "%hhd", &tmp_char);
+ memcpy(cptr, &tmp_char, sizeof(char));
}
break;
@@ -307,12 +307,12 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
short tmp_short = 0;
if (H5T_SGN_NONE == nsign) {
- HDsscanf(token, "%hu", &tmp_ushort);
- HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short));
+ sscanf(token, "%hu", &tmp_ushort);
+ memcpy(&tmp_ushort, cptr, sizeof(unsigned short));
}
else {
- HDsscanf(token, "%hd", &tmp_short);
- HDmemcpy(&tmp_short, cptr, sizeof(short));
+ sscanf(token, "%hd", &tmp_short);
+ memcpy(&tmp_short, cptr, sizeof(short));
}
break;
@@ -323,12 +323,12 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
int tmp_int = 0;
if (H5T_SGN_NONE == nsign) {
- HDsscanf(token, "%u", &tmp_uint);
- HDmemcpy(cptr, &tmp_uint, sizeof(unsigned int));
+ sscanf(token, "%u", &tmp_uint);
+ memcpy(cptr, &tmp_uint, sizeof(unsigned int));
}
else {
- HDsscanf(token, "%d", &tmp_int);
- HDmemcpy(cptr, &tmp_int, sizeof(int));
+ sscanf(token, "%d", &tmp_int);
+ memcpy(cptr, &tmp_int, sizeof(int));
}
break;
@@ -340,12 +340,12 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
long tmp_long = 0;
if (H5T_SGN_NONE == nsign) {
- HDsscanf(token, "%lu", &tmp_ulong);
- HDmemcpy(cptr, &tmp_ulong, sizeof(unsigned long));
+ sscanf(token, "%lu", &tmp_ulong);
+ memcpy(cptr, &tmp_ulong, sizeof(unsigned long));
}
else {
- HDsscanf(token, "%ld", &tmp_long);
- HDmemcpy(cptr, &tmp_long, sizeof(long));
+ sscanf(token, "%ld", &tmp_long);
+ memcpy(cptr, &tmp_long, sizeof(long));
}
break;
@@ -357,12 +357,12 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
long long tmp_llong = 0;
if (H5T_SGN_NONE == nsign) {
- HDsscanf(token, fmt_ullong, &tmp_ullong);
- HDmemcpy(cptr, &tmp_ullong, sizeof(unsigned long long));
+ sscanf(token, fmt_ullong, &tmp_ullong);
+ memcpy(cptr, &tmp_ullong, sizeof(unsigned long long));
}
else {
- HDsscanf(token, fmt_llong, &tmp_llong);
- HDmemcpy(cptr, &tmp_llong, sizeof(long long));
+ sscanf(token, fmt_llong, &tmp_llong);
+ memcpy(cptr, &tmp_llong, sizeof(long long));
}
break;
@@ -449,7 +449,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
unsigned long long tmp_ullong = 0;
#endif
- token = HDstrtok(this_str, delimiter);
+ token = strtok(this_str, delimiter);
switch (typeSize) {
case sizeof(char): {
@@ -482,7 +482,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
if (H5Tenum_valueof(tid, token, value) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- HDmemcpy(ucptr, value, typeSize);
+ memcpy(ucptr, value, typeSize);
retVal = typeSize;
@@ -517,7 +517,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
for (i = 0, total_elmts = 1; i < (hsize_t)rank; i++)
total_elmts *= dims[i];
- if (NULL == (cptr = (char *)HDcalloc((size_t)total_elmts, baseTypeSize)))
+ if (NULL == (cptr = (char *)calloc((size_t)total_elmts, baseTypeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_convert: failed to allocate array buffer");
for (i = 0; i < total_elmts; i++) {
@@ -563,7 +563,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
if (!(baseTypeSize = H5Tget_size(mtid)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (vl_buf->p = HDmalloc(baseTypeSize)))
+ if (NULL == (vl_buf->p = malloc(baseTypeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_convert: failed to allocate vlen buffer");
vl_buf->len = 1;
@@ -580,7 +580,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
if (i >= vl_buf->len) {
char *tmp_realloc;
- if (NULL == (tmp_realloc = (char *)HDrealloc(vl_buf->p, vl_buf->len * 2 * baseTypeSize)))
+ if (NULL == (tmp_realloc = (char *)realloc(vl_buf->p, vl_buf->len * 2 * baseTypeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_convert: failed to reallocate vlen buffer");
vl_buf->len *= 2;
vl_buf->p = tmp_realloc;
@@ -631,7 +631,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
case H5T_OPAQUE:
default: {
/* All other types get copied raw */
- HDmemcpy(ucptr, this_str, typeSize);
+ memcpy(ucptr, this_str, typeSize);
retVal = typeSize;
@@ -690,38 +690,38 @@ h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, void *ref_p)
buf_size = H5Rget_file_name(ref_vp, NULL, 0);
if (buf_size > 0) {
- ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1);
+ ref_name = (char *)malloc(sizeof(char) * (size_t)buf_size + 1);
if (H5Rget_file_name(ref_vp, ref_name, (size_t)buf_size + 1) >= 0) {
ref_name[buf_size] = '\0';
if (!h5str_append(out_str, ref_name))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
- HDfree(ref_name);
+ free(ref_name);
ref_name = NULL;
}
buf_size = H5Rget_obj_name(ref_vp, H5P_DEFAULT, NULL, 0);
if (buf_size > 0) {
- ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1);
+ ref_name = (char *)malloc(sizeof(char) * (size_t)buf_size + 1);
if (H5Rget_obj_name(ref_vp, H5P_DEFAULT, ref_name, (size_t)buf_size + 1) >= 0) {
ref_name[buf_size] = '\0';
if (!h5str_append(out_str, ref_name))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
- HDfree(ref_name);
+ free(ref_name);
ref_name = NULL;
}
if (H5Rget_type(ref_vp) == H5R_ATTR) {
buf_size = H5Rget_attr_name(ref_vp, NULL, 0);
if (buf_size > 0) {
- ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1);
+ ref_name = (char *)malloc(sizeof(char) * (size_t)buf_size + 1);
if (H5Rget_attr_name(ref_vp, ref_name, (size_t)buf_size + 1) >= 0) {
ref_name[buf_size] = '\0';
if (!h5str_append(out_str, ref_name))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
- HDfree(ref_name);
+ free(ref_name);
ref_name = NULL;
}
}
@@ -729,7 +729,7 @@ h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, void *ref_p)
ret_value = SUCCEED;
done:
if (ref_name)
- HDfree(ref_name);
+ free(ref_name);
return ret_value;
} /* h5str_sprint_reference */
@@ -853,10 +853,10 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
/* Build default formats for long long types */
if (!fmt_llong[0]) {
- if (HDsnprintf(fmt_llong, sizeof(fmt_llong), "%%lld") < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
- if (HDsnprintf(fmt_ullong, sizeof(fmt_ullong), "%%llu") < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(fmt_llong, sizeof(fmt_llong), "%%lld") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
+ if (snprintf(fmt_ullong, sizeof(fmt_ullong), "%%llu") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
} /* end if */
switch (tclass) {
case H5T_FLOAT: {
@@ -864,14 +864,14 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
case sizeof(float): {
float tmp_float = 0.0f;
- HDmemcpy(&tmp_float, cptr, sizeof(float));
+ memcpy(&tmp_float, cptr, sizeof(float));
size_t this_len = 25;
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%g", (double)tmp_float) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%g", (double)tmp_float) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
break;
}
@@ -879,14 +879,14 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
case sizeof(double): {
double tmp_double = 0.0;
- HDmemcpy(&tmp_double, cptr, sizeof(double));
+ memcpy(&tmp_double, cptr, sizeof(double));
size_t this_len = 25;
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%g", tmp_double) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%g", tmp_double) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
break;
}
@@ -894,14 +894,14 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
case sizeof(long double): {
long double tmp_ldouble = 0.0;
- HDmemcpy(&tmp_ldouble, cptr, sizeof(long double));
+ memcpy(&tmp_ldouble, cptr, sizeof(long double));
size_t this_len = 27;
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%Lg", tmp_ldouble) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%Lg", tmp_ldouble) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
break;
}
@@ -928,10 +928,10 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
if (is_variable) {
/* cp_vp is the pointer into the struct where a `char*' is stored. So we have
- * to dereference the pointer to get the `char*' to pass to HDstrlen(). */
+ * to dereference the pointer to get the `char*' to pass to strlen(). */
tmp_str = *(char **)in_buf;
if (NULL != tmp_str)
- typeSize = HDstrlen(tmp_str);
+ typeSize = strlen(tmp_str);
}
else {
tmp_str = cptr;
@@ -939,9 +939,9 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
/* Check for NULL pointer for string */
if (!tmp_str) {
- if (NULL == (this_str = (char *)HDmalloc(5)))
+ if (NULL == (this_str = (char *)malloc(5)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
- HDstrncpy(this_str, "NULL", 5);
+ strncpy(this_str, "NULL", 5);
}
else {
if (typeSize > 0) {
@@ -965,24 +965,24 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
size_t this_len = 7;
if (H5T_SGN_NONE == nsign) {
- HDmemcpy(&tmp_uchar, cptr, sizeof(unsigned char));
+ memcpy(&tmp_uchar, cptr, sizeof(unsigned char));
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%hhu", tmp_uchar) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%hhu", tmp_uchar) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
else {
- HDmemcpy(&tmp_char, cptr, sizeof(char));
+ memcpy(&tmp_char, cptr, sizeof(char));
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%hhd", tmp_char) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%hhd", tmp_char) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
break;
@@ -994,24 +994,24 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
size_t this_len = 9;
if (H5T_SGN_NONE == nsign) {
- HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short));
+ memcpy(&tmp_ushort, cptr, sizeof(unsigned short));
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%hu", tmp_ushort) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%hu", tmp_ushort) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
else {
- HDmemcpy(&tmp_short, cptr, sizeof(short));
+ memcpy(&tmp_short, cptr, sizeof(short));
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%hd", tmp_short) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%hd", tmp_short) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
break;
@@ -1023,24 +1023,24 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
size_t this_len = 14;
if (H5T_SGN_NONE == nsign) {
- HDmemcpy(&tmp_uint, cptr, sizeof(unsigned int));
+ memcpy(&tmp_uint, cptr, sizeof(unsigned int));
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%u", tmp_uint) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%u", tmp_uint) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
else {
- HDmemcpy(&tmp_int, cptr, sizeof(int));
+ memcpy(&tmp_int, cptr, sizeof(int));
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%d", tmp_int) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%d", tmp_int) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
break;
@@ -1052,24 +1052,24 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
size_t this_len = 23;
if (H5T_SGN_NONE == nsign) {
- HDmemcpy(&tmp_ulong, cptr, sizeof(unsigned long));
+ memcpy(&tmp_ulong, cptr, sizeof(unsigned long));
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%lu", tmp_ulong) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%lu", tmp_ulong) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
else {
- HDmemcpy(&tmp_long, cptr, sizeof(long));
+ memcpy(&tmp_long, cptr, sizeof(long));
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, "%ld", tmp_long) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%ld", tmp_long) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
break;
@@ -1082,24 +1082,24 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
size_t this_len = 25;
if (H5T_SGN_NONE == nsign) {
- HDmemcpy(&tmp_ullong, cptr, sizeof(unsigned long long));
+ memcpy(&tmp_ullong, cptr, sizeof(unsigned long long));
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, fmt_ullong, tmp_ullong) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, fmt_ullong, tmp_ullong) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
else {
- HDmemcpy(&tmp_llong, cptr, sizeof(long long));
+ memcpy(&tmp_llong, cptr, sizeof(long long));
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, this_len, fmt_llong, tmp_llong) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, fmt_llong, tmp_llong) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
break;
@@ -1160,17 +1160,17 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
size_t i;
size_t this_len = 4 * (typeSize + 1);
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
if (1 == typeSize) {
- if (HDsnprintf(this_str, this_len, "%#02x", ucptr[0]) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%#02x", ucptr[0]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
else {
for (i = 0; i < typeSize; i++)
- if (HDsnprintf(this_str, this_len, "%s%02x", i ? ":" : "", ucptr[i]) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%s%02x", i ? ":" : "", ucptr[i]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
}
@@ -1192,7 +1192,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
* object.
*/
- if (NULL == (this_str = (char *)HDmalloc(64)))
+ if (NULL == (this_str = (char *)malloc(64)))
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
if ((obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, cptr)) < 0)
@@ -1206,25 +1206,25 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
switch (oi.type) {
case H5O_TYPE_GROUP:
- if (HDsprintf(this_str, "%s %s", H5_TOOLS_GROUP, obj_tok_str) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ if (sprintf(this_str, "%s %s", H5_TOOLS_GROUP, obj_tok_str) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure");
break;
case H5O_TYPE_DATASET:
- if (HDsprintf(this_str, "%s %s", H5_TOOLS_DATASET, obj_tok_str) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ if (sprintf(this_str, "%s %s", H5_TOOLS_DATASET, obj_tok_str) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure");
break;
case H5O_TYPE_NAMED_DATATYPE:
- if (HDsprintf(this_str, "%s %s", H5_TOOLS_DATATYPE, obj_tok_str) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ if (sprintf(this_str, "%s %s", H5_TOOLS_DATATYPE, obj_tok_str) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure");
break;
case H5O_TYPE_UNKNOWN:
case H5O_TYPE_NTYPES:
default:
- if (HDsprintf(this_str, "%u-%s", (unsigned)oi.type, obj_tok_str) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ if (sprintf(this_str, "%u-%s", (unsigned)oi.type, obj_tok_str) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure");
break;
}
@@ -1245,7 +1245,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
H5R_ref_t loc_ref;
- HDmemcpy(&loc_ref, cptr, sizeof(H5R_ref_t));
+ memcpy(&loc_ref, cptr, sizeof(H5R_ref_t));
ref_type = H5Rget_type(&loc_ref);
if (!h5str_is_zero(&loc_ref, H5Tget_size(H5T_STD_REF))) {
@@ -1279,42 +1279,41 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
H5_LIBRARY_ERROR(ENVONLY);
size_t this_len = 14;
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(
ENVONLY, "h5str_sprintf: failed to allocate string buffer");
switch (oi.type) {
case H5O_TYPE_GROUP:
- if (HDsnprintf(this_str, this_len, "%s ", H5_TOOLS_GROUP) < 0)
+ if (snprintf(this_str, this_len, "%s ", H5_TOOLS_GROUP) < 0)
H5_JNI_FATAL_ERROR(ENVONLY,
- "h5str_sprintf: HDsnprintf failure");
+ "h5str_sprintf: snprintf failure");
break;
case H5O_TYPE_DATASET:
- if (HDsnprintf(this_str, this_len, "%s ", H5_TOOLS_DATASET) <
- 0)
+ if (snprintf(this_str, this_len, "%s ", H5_TOOLS_DATASET) < 0)
H5_JNI_FATAL_ERROR(ENVONLY,
- "h5str_sprintf: HDsnprintf failure");
+ "h5str_sprintf: snprintf failure");
break;
case H5O_TYPE_NAMED_DATATYPE:
- if (HDsnprintf(this_str, this_len, "%s ", H5_TOOLS_DATATYPE) <
+ if (snprintf(this_str, this_len, "%s ", H5_TOOLS_DATATYPE) <
0)
H5_JNI_FATAL_ERROR(ENVONLY,
- "h5str_sprintf: HDsnprintf failure");
+ "h5str_sprintf: snprintf failure");
break;
case H5O_TYPE_UNKNOWN:
case H5O_TYPE_NTYPES:
default:
- if (HDsnprintf(this_str, this_len, "%u-", (unsigned)oi.type) <
+ if (snprintf(this_str, this_len, "%u-", (unsigned)oi.type) <
0)
H5_JNI_FATAL_ERROR(ENVONLY,
- "h5str_sprintf: HDsnprintf failure");
+ "h5str_sprintf: snprintf failure");
break;
} /* end switch */
if (!h5str_append(out_str, this_str))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
- HDfree(this_str);
+ free(this_str);
this_str = NULL;
/* Print OID */
@@ -1324,14 +1323,14 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
H5Otoken_to_str(tid, &oi.token, &token_str);
size_t that_len = 64 + strlen(token_str) + 1;
- if (NULL == (this_str = HDmalloc(that_len)))
+ if (NULL == (this_str = malloc(that_len)))
H5_OUT_OF_MEMORY_ERROR(
ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
- if (HDsnprintf(this_str, that_len, "%lu:%s", oi.fileno,
- token_str) < 0)
+ if (snprintf(this_str, that_len, "%lu:%s", oi.fileno, token_str) <
+ 0)
H5_JNI_FATAL_ERROR(ENVONLY,
- "h5str_sprintf: HDsnprintf failure");
+ "h5str_sprintf: snprintf failure");
H5free_memory(token_str);
}
@@ -1486,17 +1485,17 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
/* All other types get printed as hexadecimal */
size_t this_len = 4 * (typeSize + 1);
- if (NULL == (this_str = (char *)HDmalloc(this_len)))
+ if (NULL == (this_str = (char *)malloc(this_len)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
if (1 == typeSize) {
- if (HDsnprintf(this_str, this_len, "%#02x", ucptr[0]) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%#02x", ucptr[0]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
else {
for (i = 0; i < typeSize; i++)
- if (HDsnprintf(this_str, this_len, "%s%02x", i ? ":" : "", ucptr[i]) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
+ if (snprintf(this_str, this_len, "%s%02x", i ? ":" : "", ucptr[i]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: snprintf failure");
}
break;
@@ -1507,11 +1506,11 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
if (!h5str_append(out_str, this_str))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
- HDfree(this_str);
+ free(this_str);
this_str = NULL;
} /* end if */
- retVal = HDstrlen(out_str->s);
+ retVal = strlen(out_str->s);
done:
if (mtid >= 0)
@@ -1559,7 +1558,7 @@ h5str_print_region_data_blocks(JNIEnv *env, hid_t region_id, h5str_t *str, int n
H5_LIBRARY_ERROR(ENVONLY);
/* Allocate space for the dimension array */
- if (NULL == (dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ if (NULL == (dims1 = (hsize_t *)malloc(sizeof(hsize_t) * (size_t)ndims)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_print_region_data_blocks: failed to allocate dimension array buffer");
@@ -1576,16 +1575,16 @@ h5str_print_region_data_blocks(JNIEnv *env, hid_t region_id, h5str_t *str, int n
if (!(type_size = H5Tget_size(type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (region_buf = HDmalloc(type_size * (size_t)numelem)))
+ if (NULL == (region_buf = malloc(type_size * (size_t)numelem)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate region buffer");
/* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
/* 1 2 n 1 2 n */
- if (NULL == (start = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ if (NULL == (start = (hsize_t *)malloc(sizeof(hsize_t) * (size_t)ndims)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_print_region_data_blocks: failed to allocate hyperslab start buffer");
- if (NULL == (count = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ if (NULL == (count = (hsize_t *)malloc(sizeof(hsize_t) * (size_t)ndims)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_print_region_data_blocks: failed to allocate hyperslab count buffer");
@@ -1619,15 +1618,15 @@ h5str_print_region_data_blocks(JNIEnv *env, hid_t region_id, h5str_t *str, int n
done:
if (count)
- HDfree(count);
+ free(count);
if (start)
- HDfree(start);
+ free(start);
if (region_buf)
- HDfree(region_buf);
+ free(region_buf);
if (mem_space >= 0)
H5Sclose(mem_space);
if (dims1)
- HDfree(dims1);
+ free(dims1);
if (sid1 >= 0)
H5Sclose(sid1);
@@ -1654,7 +1653,7 @@ h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t re
{
nblocks = H5Sget_select_hyper_nblocks(region_space);
}
- H5E_END_TRY;
+ H5E_END_TRY
if (nblocks <= 0) {
ret_value = SUCCEED;
@@ -1665,7 +1664,7 @@ h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t re
/* Print block information */
alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
- if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size)))
+ if (NULL == (ptdata = (hsize_t *)malloc((size_t)alloc_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_region_blocks: failed to allocate region block buffer");
if (H5Sget_select_hyper_blocklist(region_space, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0)
@@ -1698,9 +1697,9 @@ h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t re
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
- if (HDsnprintf(tmp_str, sizeof(tmp_str), "%s%lu", j ? "," : "(",
- (unsigned long)ptdata[i * 2 * ndims + j]) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsnprintf failure");
+ if (snprintf(tmp_str, sizeof(tmp_str), "%s%lu", j ? "," : "(",
+ (unsigned long)ptdata[i * 2 * ndims + j]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: snprintf failure");
if (!h5str_append(str, tmp_str))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
@@ -1709,9 +1708,9 @@ h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t re
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
- if (HDsnprintf(tmp_str, sizeof(tmp_str), "%s%lu", j ? "," : ")-(",
- (unsigned long)ptdata[i * 2 * ndims + j + ndims]) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsnprintf failure");
+ if (snprintf(tmp_str, sizeof(tmp_str), "%s%lu", j ? "," : ")-(",
+ (unsigned long)ptdata[i * 2 * ndims + j + ndims]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: snprintf failure");
if (!h5str_append(str, tmp_str))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
@@ -1734,7 +1733,7 @@ done:
if (dtype >= 0)
H5Tclose(dtype);
if (ptdata)
- HDfree(ptdata);
+ free(ptdata);
return ret_value;
} /* end h5str_dump_region_blocks */
@@ -1767,7 +1766,7 @@ h5str_print_region_data_points(JNIEnv *env, hid_t region_space, hid_t region_id,
H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_print_region_data_points: npoints < 0");
/* Allocate space for the dimension array */
- if (NULL == (dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ if (NULL == (dims1 = (hsize_t *)malloc(sizeof(hsize_t) * (size_t)ndims)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_print_region_data_points: failed to allocate dimension array buffer");
@@ -1780,7 +1779,7 @@ h5str_print_region_data_points(JNIEnv *env, hid_t region_space, hid_t region_id,
if (!(type_size = H5Tget_size(type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (region_buf = HDmalloc(type_size * (size_t)npoints)))
+ if (NULL == (region_buf = malloc(type_size * (size_t)npoints)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate region buffer");
if (H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) < 0)
@@ -1802,11 +1801,11 @@ h5str_print_region_data_points(JNIEnv *env, hid_t region_space, hid_t region_id,
done:
if (region_buf)
- HDfree(region_buf);
+ free(region_buf);
if (mem_space >= 0)
H5Sclose(mem_space);
if (dims1)
- HDfree(dims1);
+ free(dims1);
return ret_value;
} /* end h5str_print_region_data_points */
@@ -1831,7 +1830,7 @@ h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t re
{
npoints = H5Sget_select_elem_npoints(region_space);
}
- H5E_END_TRY;
+ H5E_END_TRY
if (npoints <= 0) {
ret_value = SUCCEED;
@@ -1842,7 +1841,7 @@ h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t re
/* Print point information */
alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
- if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size)))
+ if (NULL == (ptdata = (hsize_t *)malloc((size_t)alloc_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_dump_region_points: failed to allocate region point data buffer");
@@ -1876,9 +1875,9 @@ h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t re
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
- if (HDsnprintf(tmp_str, sizeof(tmp_str), "%s%lu", j ? "," : "(",
- (unsigned long)(ptdata[i * ndims + j])) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsnprintf failure");
+ if (snprintf(tmp_str, sizeof(tmp_str), "%s%lu", j ? "," : "(",
+ (unsigned long)(ptdata[i * ndims + j])) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: snprintf failure");
if (!h5str_append(str, tmp_str))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
@@ -1899,7 +1898,7 @@ done:
if (dtype >= 0)
H5Tclose(dtype);
if (ptdata)
- HDfree(ptdata);
+ free(ptdata);
return ret_value;
} /* end h5str_dump_region_points */
@@ -1952,8 +1951,8 @@ done:
* Purpose: Recursive check for variable length string of a datatype.
*
* Return:
- * TRUE : type contains any variable length string
- * FALSE : type doesn't contain any variable length string
+ * true : type contains any variable length string
+ * false : type doesn't contain any variable length string
* Negative value: error occur
*
*-------------------------------------------------------------------------
@@ -2294,13 +2293,13 @@ h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hs
if (H5Tis_variable_str(tid)) {
s = *(char **)((void *)mem);
if (s != NULL)
- size = HDstrlen(s);
+ size = strlen(s);
}
else {
s = (char *)mem;
}
for (i = 0; i < size && (s[i] || pad != H5T_STR_NULLTERM); i++) {
- HDmemcpy(&tempuchar, &s[i], sizeof(unsigned char));
+ memcpy(&tempuchar, &s[i], sizeof(unsigned char));
if (1 != fwrite(&tempuchar, sizeof(unsigned char), 1, stream)) {
ret_value = FAIL;
break;
@@ -2402,7 +2401,7 @@ h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hs
for (block_index = 0; block_index < block_nelmts; block_index++) {
hvl_t vl_elem;
- HDmemcpy(&vl_elem, ((unsigned char *)_mem) + block_index * size, sizeof(hvl_t));
+ memcpy(&vl_elem, ((unsigned char *)_mem) + block_index * size, sizeof(hvl_t));
/* Get the number of sequence elements */
nelmts = vl_elem.len;
@@ -2428,7 +2427,7 @@ h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hs
for (block_index = 0; block_index < block_nelmts; block_index++) {
H5R_ref_t loc_ref;
- HDmemcpy(&loc_ref, ((unsigned char *)_mem) + block_index * size, sizeof(H5R_ref_t));
+ memcpy(&loc_ref, ((unsigned char *)_mem) + block_index * size, sizeof(H5R_ref_t));
if ((region_id = H5Ropen_object(&loc_ref, H5P_DEFAULT, H5P_DEFAULT)) < 0)
continue;
@@ -2513,7 +2512,7 @@ render_bin_output_region_data_blocks(FILE *stream, hid_t region_id, hid_t contai
}
/* Allocate space for the dimension array */
- if (NULL == (dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ if (NULL == (dims1 = (hsize_t *)malloc(sizeof(hsize_t) * (size_t)ndims))) {
ret_value = FAIL;
goto done;
}
@@ -2535,19 +2534,19 @@ render_bin_output_region_data_blocks(FILE *stream, hid_t region_id, hid_t contai
goto done;
}
- if (NULL == (region_buf = HDmalloc(type_size * (size_t)numelem))) {
+ if (NULL == (region_buf = malloc(type_size * (size_t)numelem))) {
ret_value = FAIL;
goto done;
}
/* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
/* 1 2 n 1 2 n */
- if (NULL == (start = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ if (NULL == (start = (hsize_t *)malloc(sizeof(hsize_t) * (size_t)ndims))) {
ret_value = FAIL;
goto done;
}
- if (NULL == (count = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ if (NULL == (count = (hsize_t *)malloc(sizeof(hsize_t) * (size_t)ndims))) {
ret_value = FAIL;
goto done;
}
@@ -2583,15 +2582,15 @@ render_bin_output_region_data_blocks(FILE *stream, hid_t region_id, hid_t contai
done:
if (count)
- HDfree(count);
+ free(count);
if (start)
- HDfree(start);
+ free(start);
if (region_buf)
- HDfree(region_buf);
+ free(region_buf);
if (mem_space >= 0)
H5Sclose(mem_space);
if (dims1)
- HDfree(dims1);
+ free(dims1);
if (sid1 >= 0)
H5Sclose(sid1);
@@ -2634,7 +2633,7 @@ render_bin_output_region_blocks(FILE *stream, hid_t region_space, hid_t region_i
alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
- if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) {
+ if (NULL == (ptdata = (hsize_t *)malloc((size_t)alloc_size))) {
ret_value = FAIL;
goto done;
}
@@ -2667,7 +2666,7 @@ done:
if (dtype >= 0)
H5Tclose(dtype);
if (ptdata)
- HDfree(ptdata);
+ free(ptdata);
return ret_value;
} /* end render_bin_output_region_blocks */
@@ -2700,13 +2699,13 @@ render_bin_output_region_data_points(FILE *stream, hid_t region_space, hid_t reg
goto done;
}
- if (NULL == (region_buf = HDmalloc(type_size * (size_t)npoints))) {
+ if (NULL == (region_buf = malloc(type_size * (size_t)npoints))) {
ret_value = FAIL;
goto done;
}
/* Allocate space for the dimension array */
- if (NULL == (dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ if (NULL == (dims1 = (hsize_t *)malloc(sizeof(hsize_t) * (size_t)ndims))) {
ret_value = FAIL;
goto done;
}
@@ -2735,11 +2734,11 @@ render_bin_output_region_data_points(FILE *stream, hid_t region_space, hid_t reg
done:
if (dims1)
- HDfree(dims1);
+ free(dims1);
if (mem_space >= 0)
H5Sclose(mem_space);
if (region_buf)
- HDfree(region_buf);
+ free(region_buf);
return ret_value;
} /* end render_bin_output_region_data_points */
@@ -2780,7 +2779,7 @@ render_bin_output_region_points(FILE *stream, hid_t region_space, hid_t region_i
alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
- if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) {
+ if (NULL == (ptdata = (hsize_t *)malloc((size_t)alloc_size))) {
ret_value = FAIL;
goto done;
}
@@ -2813,7 +2812,7 @@ done:
if (dtype >= 0)
H5Tclose(dtype);
if (ptdata)
- HDfree(ptdata);
+ free(ptdata);
return ret_value;
} /* end render_bin_output_region_points */
@@ -2871,8 +2870,8 @@ h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id)
}
/* Check if we have VL data in the dataset's datatype */
- if (h5str_detect_vlen(type_id) == TRUE)
- vl_data = TRUE;
+ if (h5str_detect_vlen(type_id) == true)
+ vl_data = true;
if (!(size = H5Tget_size(type_id))) {
ret_value = FAIL;
@@ -2880,8 +2879,8 @@ h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id)
}
alloc_size = p_nelmts * size;
- HDassert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/
- if (NULL != (buf = (unsigned char *)HDmalloc((size_t)alloc_size))) {
+ assert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/
+ if (NULL != (buf = (unsigned char *)malloc((size_t)alloc_size))) {
/* Read the data */
if (H5Aread(region_id, type_id, buf) >= 0) {
@@ -2910,7 +2909,7 @@ h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id)
done:
if (buf)
- HDfree(buf);
+ free(buf);
if (region_space >= 0)
H5Sclose(region_space);
if (type_id >= 0)
@@ -2974,7 +2973,7 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL ==
- (sm_buf = (unsigned char *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts)))
+ (sm_buf = (unsigned char *)calloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf");
/* Read the data */
@@ -3056,7 +3055,7 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order)
}
if (sm_nbytes > 0) {
- if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes)))
+ if (NULL == (sm_buf = (unsigned char *)malloc((size_t)sm_nbytes)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf");
sm_nelmts = sm_nbytes / p_type_nbytes;
@@ -3065,8 +3064,8 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order)
H5_LIBRARY_ERROR(ENVONLY);
/* The stripmine loop */
- HDmemset(hs_offset, 0, sizeof hs_offset);
- HDmemset(zero, 0, sizeof zero);
+ memset(hs_offset, 0, sizeof hs_offset);
+ memset(zero, 0, sizeof zero);
for (elmtno = 0; elmtno < (hsize_t)p_nelmts; elmtno += hs_nelmts) {
/* Calculate the hyperslab size */
@@ -3133,7 +3132,7 @@ done:
if (sm_space >= 0)
H5Sclose(sm_space);
if (sm_buf)
- HDfree(sm_buf);
+ free(sm_buf);
if (f_space >= 0)
H5Sclose(f_space);
if (p_type >= 0)
@@ -3183,7 +3182,7 @@ h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr_id, int binary_order
H5_LIBRARY_ERROR(ENVONLY);
if (NULL ==
- (sm_buf = (unsigned char *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts)))
+ (sm_buf = (unsigned char *)calloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf");
/* Read the data */
@@ -3246,7 +3245,7 @@ h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr_id, int binary_order
vl_data = 1;
alloc_size = (size_t)p_nelmts * H5Tget_size(p_type);
- if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)alloc_size)))
+ if (NULL == (sm_buf = (unsigned char *)malloc((size_t)alloc_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf");
/* Read the data */
@@ -3274,7 +3273,7 @@ h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr_id, int binary_order
done:
if (sm_buf)
- HDfree(sm_buf);
+ free(sm_buf);
if (f_space >= 0)
H5Sclose(f_space);
if (p_type >= 0)
@@ -3290,8 +3289,8 @@ done:
*
* Purpose: Recursive check for variable length string of a datatype.
*
- * Return: TRUE : type contains any variable length string
- * FALSE : type doesn't contain any variable length string
+ * Return: true : type contains any variable length string
+ * false : type doesn't contain any variable length string
* Negative value: failed
*-------------------------------------------------------------------------
*/
@@ -3299,10 +3298,10 @@ htri_t
H5Tdetect_variable_str(hid_t tid)
{
H5T_class_t tclass = -1;
- htri_t ret = FALSE;
+ htri_t ret = false;
ret = H5Tis_variable_str(tid);
- if ((ret == TRUE) || (ret < 0))
+ if ((ret == true) || (ret < 0))
goto done;
tclass = H5Tget_class(tid);
@@ -3314,7 +3313,7 @@ H5Tdetect_variable_str(hid_t tid)
goto done;
}
ret = H5Tdetect_variable_str(btid);
- if ((ret == TRUE) || (ret < 0)) {
+ if ((ret == true) || (ret < 0)) {
H5Tclose(btid);
goto done;
}
@@ -3334,7 +3333,7 @@ H5Tdetect_variable_str(hid_t tid)
hid_t mtid = H5Tget_member_type(tid, u);
ret = H5Tdetect_variable_str(mtid);
- if ((ret == TRUE) || (ret < 0)) {
+ if ((ret == true) || (ret < 0)) {
H5Tclose(mtid);
goto done;
}
@@ -3373,24 +3372,24 @@ h5str_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, v
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if ((i > 0) && (bytes_in > 0)) {
- if (HDfprintf(stream, ", ") < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure");
+ if (fprintf(stream, ", ") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: fprintf failure");
if (line_count >= H5TOOLS_TEXT_BLOCK) {
line_count = 0;
- if (HDfprintf(stream, "\n") < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure");
+ if (fprintf(stream, "\n") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: fprintf failure");
}
}
- if (HDfprintf(stream, "%s", buffer.s) < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure");
+ if (fprintf(stream, "%s", buffer.s) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: fprintf failure");
h5str_free(&buffer);
} /* end for (i = 0; i < nelmts... */
- if (HDfprintf(stream, "\n") < 0)
- H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure");
+ if (fprintf(stream, "\n") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: fprintf failure");
done:
if (buffer.s)
@@ -3424,7 +3423,7 @@ Java_hdf_hdf5lib_H5_H5AreadComplex(JNIEnv *env, jclass clss, jlong attr_id, jlon
UNUSED(clss);
- HDmemset(&h5str, 0, sizeof(h5str_t));
+ memset(&h5str, 0, sizeof(h5str_t));
if ((p_type = H5Tget_native_type(mem_type_id, H5T_DIR_DEFAULT)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -3435,7 +3434,7 @@ Java_hdf_hdf5lib_H5_H5AreadComplex(JNIEnv *env, jclass clss, jlong attr_id, jlon
if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) <= 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadComplex: read buffer length <= 0");
- if (NULL == (readBuf = (char *)HDmalloc((size_t)n * size)))
+ if (NULL == (readBuf = (char *)malloc((size_t)n * size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadComplex: failed to allocate read buffer");
if ((status = H5Aread(attr_id, mem_type_id, readBuf)) < 0)
@@ -3465,7 +3464,7 @@ done:
if (h5str.s)
h5str_free(&h5str);
if (readBuf)
- HDfree(readBuf);
+ free(readBuf);
if (p_type >= 0)
H5Tclose(p_type);
@@ -3503,7 +3502,7 @@ Java_hdf_hdf5lib_H5_H5Acopy(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id
H5_LIBRARY_ERROR(ENVONLY);
total_size = (hsize_t)npoints * (hsize_t)type_size;
- if (NULL == (buf = (jbyte *)HDmalloc((size_t)total_size * sizeof(jbyte))))
+ if (NULL == (buf = (jbyte *)malloc((size_t)total_size * sizeof(jbyte))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Acopy: failed to allocate buffer");
if ((retVal = H5Aread((hid_t)src_id, tid, buf)) < 0)
@@ -3521,7 +3520,7 @@ Java_hdf_hdf5lib_H5_H5Acopy(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id
done:
if (buf)
- HDfree(buf);
+ free(buf);
if (tid >= 0)
H5Tclose(tid);
if (sid >= 0)
@@ -3564,7 +3563,7 @@ Java_hdf_hdf5lib_H5_H5Dcopy(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id
H5_LIBRARY_ERROR(ENVONLY);
total_size = (hsize_t)npoints * (hsize_t)type_size;
- if (NULL == (buf = (jbyte *)HDmalloc((size_t)total_size * sizeof(jbyte))))
+ if (NULL == (buf = (jbyte *)malloc((size_t)total_size * sizeof(jbyte))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dcopy: failed to allocate buffer");
if ((retVal = H5Dread((hid_t)src_id, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)) < 0)
@@ -3582,7 +3581,7 @@ Java_hdf_hdf5lib_H5_H5Dcopy(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id
done:
if (buf)
- HDfree(buf);
+ free(buf);
if (tid >= 0)
H5Tclose(tid);
if (sid >= 0)
@@ -3673,13 +3672,13 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full(JNIEnv *env, jclass clss, jlong loc_
PIN_INT_ARRAY(ENVONLY, lType, ltarr, &isCopy, "H5Gget_obj_info_full: lType not pinned");
PIN_LONG_ARRAY(ENVONLY, fNo, fnoP, &isCopy, "H5Gget_obj_info_full: fNo not pinned");
- if (NULL == (oName = (char **)HDcalloc((size_t)n, sizeof(*oName))))
+ if (NULL == (oName = (char **)calloc((size_t)n, sizeof(*oName))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for object name");
- if (NULL == (tokens = (H5O_token_t *)HDcalloc((size_t)n, sizeof(H5O_token_t))))
+ if (NULL == (tokens = (H5O_token_t *)calloc((size_t)n, sizeof(H5O_token_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for object tokens");
- if (NULL == (fnos = (unsigned long *)HDcalloc((size_t)n, sizeof(unsigned long))))
+ if (NULL == (fnos = (unsigned long *)calloc((size_t)n, sizeof(unsigned long))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"H5Gget_obj_info_full: failed to allocate buffer for file number info");
@@ -3708,7 +3707,7 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full(JNIEnv *env, jclass clss, jlong loc_
} /* end if */
/* Create an H5O_token_t object */
- if (NULL == (token = create_H5O_token_t(ENVONLY, &tokens[i], TRUE)))
+ if (NULL == (token = create_H5O_token_t(ENVONLY, &tokens[i], true)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetObjectArrayElement(ENVONLY, oToken, i, token);
@@ -3723,9 +3722,9 @@ done:
UNPIN_JAVA_STRING(ENVONLY, group_name, gName);
}
if (fnos)
- HDfree(fnos);
+ free(fnos);
if (tokens)
- HDfree(tokens);
+ free(tokens);
if (oName)
h5str_array_free(oName, (size_t)n);
if (fnoP)
@@ -3775,10 +3774,10 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max(JNIEnv *env, jclass clss, jlong loc_i
PIN_INT_ARRAY(ENVONLY, oType, otarr, &isCopy, "H5Gget_obj_info_max: oType not pinned");
PIN_INT_ARRAY(ENVONLY, lType, ltarr, &isCopy, "H5Gget_obj_info_max: lType not pinned");
- if (NULL == (oName = (char **)HDcalloc((size_t)n, sizeof(*oName))))
+ if (NULL == (oName = (char **)calloc((size_t)n, sizeof(*oName))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for object name");
- if (NULL == (tokens = (H5O_token_t *)HDcalloc((size_t)n, sizeof(H5O_token_t))))
+ if (NULL == (tokens = (H5O_token_t *)calloc((size_t)n, sizeof(H5O_token_t))))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for object tokens");
if ((ret_val = H5Gget_obj_info_max((hid_t)loc_id, oName, (int *)otarr, (int *)ltarr, tokens, maxnum)) < 0)
@@ -3796,7 +3795,7 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max(JNIEnv *env, jclass clss, jlong loc_i
}
/* Create an H5O_token_t object */
- if (NULL == (token = create_H5O_token_t(ENVONLY, &tokens[i], TRUE)))
+ if (NULL == (token = create_H5O_token_t(ENVONLY, &tokens[i], true)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetObjectArrayElement(ENVONLY, oToken, i, token);
@@ -3807,7 +3806,7 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max(JNIEnv *env, jclass clss, jlong loc_i
done:
if (tokens)
- HDfree(tokens);
+ free(tokens);
if (oName)
h5str_array_free(oName, (size_t)n);
if (ltarr)
@@ -3896,7 +3895,7 @@ obj_info_all(hid_t loc_id, const char *name, const H5L_info2_t *info, void *op_d
datainfo->ltype[datainfo->count] = info->type;
datainfo->fno[datainfo->count] = object_info.fileno;
- HDmemcpy(&datainfo->obj_token[datainfo->count], &object_info.token, sizeof(object_info.token));
+ memcpy(&datainfo->obj_token[datainfo->count], &object_info.token, sizeof(object_info.token));
}
done:
@@ -3926,7 +3925,7 @@ obj_info_max(hid_t loc_id, const char *name, const H5L_info2_t *info, void *op_d
datainfo->otype[datainfo->count] = object_info.type;
datainfo->ltype[datainfo->count] = info->type;
- HDmemcpy(&datainfo->obj_token[datainfo->count], &object_info.token, sizeof(object_info.token));
+ memcpy(&datainfo->obj_token[datainfo->count], &object_info.token, sizeof(object_info.token));
done:
datainfo->count++;
@@ -3969,20 +3968,20 @@ Java_hdf_hdf5lib_H5_H5export_1dataset(JNIEnv *env, jclass clss, jstring file_exp
PIN_JAVA_STRING(ENVONLY, file_export_name, file_export, NULL,
"H5export_dataset: file_export name not pinned");
- if (NULL == (stream = HDfopen(file_export, "w+")))
- H5_JNI_FATAL_ERROR(ENVONLY, "HDfopen failed");
+ if (NULL == (stream = fopen(file_export, "w+")))
+ H5_JNI_FATAL_ERROR(ENVONLY, "fopen failed");
if ((ret_val = h5str_dump_simple_dset(ENVONLY, stream, dataset_id, binary_order)) < 0)
H5_ASSERTION_ERROR(ENVONLY, "h5str_dump_simple_dset failed");
if (stream) {
- HDfclose(stream);
+ fclose(stream);
stream = NULL;
}
done:
if (stream)
- HDfclose(stream);
+ fclose(stream);
if (file_export)
UNPIN_JAVA_STRING(ENVONLY, file_export_name, file_export);
if (object_name)
@@ -4024,20 +4023,20 @@ Java_hdf_hdf5lib_H5_H5export_1attribute(JNIEnv *env, jclass clss, jstring file_e
PIN_JAVA_STRING(ENVONLY, file_export_name, file_export, NULL,
"H5export_dataset: file_export name not pinned");
- if (NULL == (stream = HDfopen(file_export, "w+")))
- H5_JNI_FATAL_ERROR(ENVONLY, "HDfopen failed");
+ if (NULL == (stream = fopen(file_export, "w+")))
+ H5_JNI_FATAL_ERROR(ENVONLY, "fopen failed");
if ((ret_val = h5str_dump_simple_mem(ENVONLY, stream, attr_id, binary_order)) < 0)
H5_ASSERTION_ERROR(ENVONLY, "h5str_dump_simple_dset failed");
if (stream) {
- HDfclose(stream);
+ fclose(stream);
stream = NULL;
}
done:
if (stream)
- HDfclose(stream);
+ fclose(stream);
if (file_export)
UNPIN_JAVA_STRING(ENVONLY, file_export_name, file_export);
if (object_name)
@@ -4099,7 +4098,7 @@ translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, vo
hvl_t vl_elem;
/* Get the number of sequence elements */
- HDmemcpy(&vl_elem, char_buf, sizeof(hvl_t));
+ memcpy(&vl_elem, char_buf, sizeof(hvl_t));
jsize nelmts = (jsize)vl_elem.len;
if (vl_elem.len != (size_t)nelmts)
H5_JNI_FATAL_ERROR(ENVONLY, "translate_atomic_rbuf: overflow of number of VL elements");
@@ -4157,12 +4156,12 @@ translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, vo
typeCount = typeSize / vlSize;
- if (NULL == (objBuf = HDmalloc(typeSize)))
+ if (NULL == (objBuf = malloc(typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_atomic_rbuf: failed to allocate buffer");
/* Convert each element */
/* Get the object element */
- HDmemcpy((char *)objBuf, char_buf, typeSize);
+ memcpy((char *)objBuf, char_buf, typeSize);
/* The list we're going to return: */
if (NULL == (jList = (jobjectArray)ENVPTR->NewObject(ENVONLY, arrCList, arrListMethod, 0)))
@@ -4172,7 +4171,7 @@ translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, vo
jobj = jList;
if (objBuf)
- HDfree(objBuf);
+ free(objBuf);
break;
} /* H5T_ARRAY */
@@ -4184,7 +4183,7 @@ translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, vo
switch (typeSize) {
case sizeof(jbyte): {
jbyte byteValue;
- HDmemcpy(((char *)&byteValue), char_buf, typeSize);
+ memcpy(((char *)&byteValue), char_buf, typeSize);
if (NULL ==
(jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cByte, byteValueMid, byteValue)))
@@ -4193,7 +4192,7 @@ translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, vo
}
case sizeof(jshort): {
jshort shortValue;
- HDmemcpy(((char *)&shortValue), char_buf, typeSize);
+ memcpy(((char *)&shortValue), char_buf, typeSize);
if (NULL ==
(jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cShort, shortValueMid, shortValue)))
@@ -4203,7 +4202,7 @@ translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, vo
case sizeof(jint): {
jint intValue;
- HDmemcpy(((char *)&intValue), char_buf, typeSize);
+ memcpy(((char *)&intValue), char_buf, typeSize);
if (NULL == (jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cInt, intValueMid, intValue)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
@@ -4211,7 +4210,7 @@ translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, vo
}
case sizeof(jlong): {
jlong longValue;
- HDmemcpy(((char *)&longValue), char_buf, typeSize);
+ memcpy(((char *)&longValue), char_buf, typeSize);
if (NULL ==
(jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cLong, longValueMid, longValue)))
@@ -4226,7 +4225,7 @@ translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, vo
switch (typeSize) {
case sizeof(jfloat): {
jfloat floatValue;
- HDmemcpy(((char *)&floatValue), char_buf, typeSize);
+ memcpy(((char *)&floatValue), char_buf, typeSize);
if (NULL == (jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cFloat, floatValueMid,
(double)floatValue)))
@@ -4235,7 +4234,7 @@ translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, vo
}
case sizeof(jdouble): {
jdouble doubleValue;
- HDmemcpy(((char *)&doubleValue), char_buf, typeSize);
+ memcpy(((char *)&doubleValue), char_buf, typeSize);
if (NULL == (jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cDouble, doubleValueMid,
doubleValue)))
@@ -4260,7 +4259,7 @@ translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, vo
PIN_BYTE_ARRAY(ENVONLY, (jbyteArray)jobj, barray, &bb,
"translate_atomic_rbuf reference: byte array not pinned");
- HDmemcpy(barray, ((jbyte *)raw_buf), typeSize);
+ memcpy(barray, ((jbyte *)raw_buf), typeSize);
if (barray)
UNPIN_BYTE_ARRAY(ENVONLY, (jbyteArray)jobj, barray, jobj ? 0 : JNI_ABORT);
@@ -4354,12 +4353,12 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_
vl_elem.len = (size_t)jnelmts;
- if (NULL == (vl_elem.p = HDmalloc((size_t)jnelmts * vlSize)))
+ if (NULL == (vl_elem.p = malloc((size_t)jnelmts * vlSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_atomic_wbuf: failed to allocate vlen ptr buffer");
translate_wbuf(ENVONLY, (jobjectArray)in_obj, memb, vlClass, (jsize)jnelmts, vl_elem.p);
- HDmemcpy(char_buf, &vl_elem, sizeof(hvl_t));
+ memcpy(char_buf, &vl_elem, sizeof(hvl_t));
break;
} /* H5T_VLEN */
case H5T_COMPOUND: {
@@ -4418,12 +4417,12 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_
if (jnelmts < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "translate_atomic_wbuf: number of array elements < 0");
- if (NULL == (objBuf = HDmalloc((size_t)jnelmts * vlSize)))
+ if (NULL == (objBuf = malloc((size_t)jnelmts * vlSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_atomic_wbuf: failed to allocate buffer");
translate_wbuf(ENVONLY, array, memb, vlClass, (jsize)jnelmts, objBuf);
- HDmemcpy(char_buf, (char *)objBuf, vlSize * (size_t)jnelmts);
+ memcpy(char_buf, (char *)objBuf, vlSize * (size_t)jnelmts);
break;
} /* H5T_ARRAY */
case H5T_ENUM:
@@ -4434,22 +4433,22 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_
switch (typeSize) {
case sizeof(jbyte): {
jbyte byteValue = ENVPTR->CallByteMethod(ENVONLY, in_obj, byteValueMid);
- HDmemcpy(char_buf, ((char *)&byteValue), typeSize);
+ memcpy(char_buf, ((char *)&byteValue), typeSize);
break;
}
case sizeof(jshort): {
jshort shortValue = ENVPTR->CallShortMethod(ENVONLY, in_obj, shortValueMid);
- HDmemcpy(char_buf, ((char *)&shortValue), typeSize);
+ memcpy(char_buf, ((char *)&shortValue), typeSize);
break;
}
case sizeof(jint): {
jint intValue = ENVPTR->CallIntMethod(ENVONLY, in_obj, intValueMid);
- HDmemcpy(char_buf, ((char *)&intValue), typeSize);
+ memcpy(char_buf, ((char *)&intValue), typeSize);
break;
}
case sizeof(jlong): {
jlong longValue = ENVPTR->CallLongMethod(ENVONLY, in_obj, longValueMid);
- HDmemcpy(char_buf, ((char *)&longValue), typeSize);
+ memcpy(char_buf, ((char *)&longValue), typeSize);
break;
}
}
@@ -4460,12 +4459,12 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_
switch (typeSize) {
case sizeof(jfloat): {
jfloat floatValue = ENVPTR->CallFloatMethod(ENVONLY, in_obj, floatValueMid);
- HDmemcpy(char_buf, ((char *)&floatValue), typeSize);
+ memcpy(char_buf, ((char *)&floatValue), typeSize);
break;
}
case sizeof(jdouble): {
jdouble doubleValue = ENVPTR->CallDoubleMethod(ENVONLY, in_obj, doubleValueMid);
- HDmemcpy(char_buf, ((char *)&doubleValue), typeSize);
+ memcpy(char_buf, ((char *)&doubleValue), typeSize);
break;
}
}
@@ -4474,7 +4473,7 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_
case H5T_REFERENCE: {
/* Convert each array element */
jbyte *barray = (jbyte *)ENVPTR->GetByteArrayElements(ENVONLY, in_obj, 0);
- HDmemcpy(char_buf, ((char *)barray), typeSize);
+ memcpy(char_buf, ((char *)barray), typeSize);
ENVPTR->ReleaseByteArrayElements(ENVONLY, in_obj, barray, 0);
break;
} /* H5T_REFERENCE */
@@ -4488,18 +4487,18 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_
jsize length;
const char *utf8 = NULL;
- HDmemset(char_buf, 0, typeSize);
+ memset(char_buf, 0, typeSize);
if (NULL != in_obj) {
PIN_JAVA_STRING(ENVONLY, in_obj, utf8, NULL, "translate_atomic_wbuf jobj not pinned");
length = ENVPTR->GetStringUTFLength(ENVONLY, in_obj);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (is_variable) {
- char *new_buf = (char *)HDcalloc(1, (size_t)(length + 1));
- HDmemcpy(((char *)new_buf), utf8, (size_t)length);
- HDmemcpy(char_buf, &new_buf, typeSize);
+ char *new_buf = (char *)calloc(1, (size_t)(length + 1));
+ memcpy(((char *)new_buf), utf8, (size_t)length);
+ memcpy(char_buf, &new_buf, typeSize);
}
else {
- HDmemcpy(char_buf, utf8, (size_t)length);
+ memcpy(char_buf, utf8, (size_t)length);
}
UNPIN_JAVA_STRING(ENVONLY, in_obj, utf8);
utf8 = NULL;
@@ -4561,7 +4560,7 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t
jList = NULL;
/* Get the number of sequence elements */
- HDmemcpy(&vl_elem, char_buf + i * sizeof(hvl_t), sizeof(hvl_t));
+ memcpy(&vl_elem, char_buf + i * sizeof(hvl_t), sizeof(hvl_t));
jsize nelmts = (jsize)vl_elem.len;
if (vl_elem.len != (size_t)nelmts)
H5_JNI_FATAL_ERROR(ENVONLY, "translate_rbuf: overflow of number of VL elements");
@@ -4666,7 +4665,7 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t
typeCount = typeSize / vlSize;
- if (NULL == (objBuf = HDmalloc(typeSize)))
+ if (NULL == (objBuf = malloc(typeSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_rbuf: failed to allocate buffer");
/* Convert each element to a list */
@@ -4675,7 +4674,7 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t
jList = NULL;
/* Get the object element */
- HDmemcpy((char *)objBuf, char_buf + i * typeSize, typeSize);
+ memcpy((char *)objBuf, char_buf + i * typeSize, typeSize);
/* The list we're going to return: */
if (i < (size_t)ret_buflen) {
@@ -4700,7 +4699,7 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t
}
if (objBuf)
- HDfree(objBuf);
+ free(objBuf);
break;
} /* H5T_ARRAY */
@@ -4784,12 +4783,12 @@ translate_wbuf(JNIEnv *env, jobjectArray in_buf, jlong mem_type_id, H5T_class_t
vl_elem.len = (size_t)jnelmts;
- if (NULL == (vl_elem.p = HDmalloc((size_t)jnelmts * vlSize)))
+ if (NULL == (vl_elem.p = malloc((size_t)jnelmts * vlSize)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_wbuf: failed to allocate vlen ptr buffer");
translate_wbuf(ENVONLY, array, memb, vlClass, (jsize)jnelmts, vl_elem.p);
- HDmemcpy(char_buf + i * sizeof(hvl_t), &vl_elem, sizeof(hvl_t));
+ memcpy(char_buf + i * sizeof(hvl_t), &vl_elem, sizeof(hvl_t));
ENVPTR->DeleteLocalRef(ENVONLY, jList);
} /* end for (i = 0; i < count; i++) */
diff --git a/java/src/jni/h5vlImp.c b/java/src/jni/h5vlImp.c
index 770fc45..090e1ce 100644
--- a/java/src/jni/h5vlImp.c
+++ b/java/src/jni/h5vlImp.c
@@ -221,7 +221,7 @@ Java_hdf_hdf5lib_H5_H5VLget_1connector_1name(JNIEnv *env, jclass clss, jlong obj
H5_LIBRARY_ERROR(ENVONLY);
if (buf_size > 0) {
- if (NULL == (volName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ if (NULL == (volName = (char *)malloc(sizeof(char) * (size_t)buf_size + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"H5VLget_connector_name: failed to allocated VOL connector name buffer");
@@ -235,7 +235,7 @@ Java_hdf_hdf5lib_H5_H5VLget_1connector_1name(JNIEnv *env, jclass clss, jlong obj
done:
if (volName)
- HDfree(volName);
+ free(volName);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1name */
generated by cgit v0.12 at 2024-11-16 06:47:05 (GMT)