diff options
| -rw-r--r-- | release_docs/INSTALL | 20 | ||||
| -rw-r--r-- | release_docs/INSTALL_TFLOPS | 175 | ||||
| -rw-r--r-- | release_docs/INSTALL_VFL | 131 |
3 files changed, 9 insertions, 317 deletions
diff --git a/release_docs/INSTALL b/release_docs/INSTALL index e5ae047..924c29b 100644 --- a/release_docs/INSTALL +++ b/release_docs/INSTALL @@ -13,9 +13,8 @@ 2.4. Windows/NT 3. Quick installation - 3.1. TFLOPS - 3.2. Windows - 3.3. Certain Virtual File Layer(VFL) + 3.1. Windows + 3.2. RedStorm (Cray XT3) 4. HDF5 dependencies 4.1. Zlib @@ -121,17 +120,16 @@ $ make check $ make install -3.1. TFLOPS - Users of the Intel TFLOPS machine, after reading this file, - should see the INSTALL_TFLOPS for more instructions. - -3.2. Windows +3.1. Windows Users of Microsoft Windows should see the INSTALL_Windows for detailed instructions. -3.3. Certain Virtual File Layer(VFL) - If users want to install with special Virtual File Layer(VFL), - please go to read INSTALL_VFL file. +3.2. RedStorm (Cray Xt3) + Users of the Red Storm machine, after reading this file, should read + the Red Storm section in the INSTALL_parallel file for specific + instructions for the Red Storm machine. The same instructions would + probably work for other Cray XT3 systems but they have not been + verified. 4. HDF5 dependencies diff --git a/release_docs/INSTALL_TFLOPS b/release_docs/INSTALL_TFLOPS deleted file mode 100644 index 66dafc2..0000000 --- a/release_docs/INSTALL_TFLOPS +++ /dev/null @@ -1,175 +0,0 @@ -FOR THE INTEL TFLOPS MACHINE: - -Below are the step-by-step procedures for building, testing, and -installing the parallel and sequential versions of the HDF5 library. - ------------------ -Software locations ------------------- -The zlib compression library is installed in /usr/community/hdf5/ZLIB. -The latest version is zlib v1.1.4. - -The mpich library, including mpi-io support, is now supported by the -TFLOPS system staff. Check Sasn100:/usr/local/FAQ/R4.4.0_Release_Notes -for details. A modified version of mpicc is created to simply the -command. It is installed as /usr/community/hdf5/tflop-mpich/bin/mpicc. - ---------------- -gmake recommended ---------------- -Both Sasn100 and Janus have multiple versions of the make command. -We recommand the use of the Gnu gmake which has some features -(e.g., -j and --srcdir support) that makes (sic) life easier. - ---------------- -Parallel HDF5: ---------------- - -The setup process for building the parallel version of the HDF5 library for the -ASCI Red machine is very similar to the sequential version. Since TFLOPS -does not support MPIO, we have prepared a shell-script file that configures -with the appropriate MPI library. - -Assuming you have already unpacked the HDF5 tar-file into the -directory <hdf5>, follow the steps below: -FROM SASN100, - -1) cd <hdf5> - -2) CC=/usr/community/hdf5/tflop-mpich/bin/mpicc \ - ./configure --host=tflops --with-zlib=/usr/community/hdf5/ZLIB - - Alternately, you may specify the host explicitly: - - CC=/usr/community/hdf5/tflop-mpich/bin/mpicc \ - ./configure --host=i386-intel-osf1 --with-zlib=/usr/community/hdf5/ZLIB - - Skip the "--with-zlib=..." option if you do not wish to include the zlib - compression feature. Without the zlib compression feature, the library - will not be able to access zlib compressed datasets. - - You may safely ignore the WARNING message, - ========= - configure: WARNING: If you wanted to set the --build type, don't use --host. - If a cross compiler is detected then cross compile mode will be used. - ========= - You may add the option "--build=i386-intel-osf1" to get rid of the WARNING. - - (The previous bugs in src/Makefile and test/Makefile have been resolved. - You don't need to edit them any more.) - -3) gmake H5detect - - -FROM JANUS, - -4) cd <hdf5> - -5) gmake H5Tinit.c - - -FROM SASN100, - -6) gmake - - -When everything is finished compiling and linking, -FROM JANUS, - -7) gmake check - (We have not encountered the following problem for a year.) - Sometimes the "gmake check" fails in the sub-directories of test - or tools with a message as "print not found". This is due to the - "gmake" of Janus thinking some binary code needs to be recompiled. - The easiest way to fix it is - FROM SASN100 - cd <hdf5>/test # or cd <hdf5>/tools - gmake clean; gmake # re-make all binary - - -Once satisfied with the parallel test results, as long as you -have the correct permission, -FROM SASN100, - -8) gmake install - - ---------------- -Sequential HDF5: ---------------- -(**NOTE** We have stopped testing sequential HDF5 for the Tflops machine -since it has little practical value to build sequential applications for -the Tflops machine. The instruction below are kept more for historical -purpose.) - -The setup process for building the sequential HDF5 library for the -ASCI Red machine is done by a coordination of events from sasn100 and -janus. Though janus can do compiling, it is better to build it -from sasn100 which has more complete building tools and runs faster. -It is also anti-social to tie up janus with compiling. The HDF5 building -requires the use of janus because one of steps is to execute a program -to find out the run-time characteristics of the TFLOPS machine. - -Assuming you have already unpacked the HDF5 tar-file into the -directory <hdf5>, follow the steps below: - -FROM SASN100, - -1) cd <hdf5> - -2) ./configure --host=tflops --with-zlib=/usr/community/hdf5/ZLIB - - Alternately, you may specify the host explicitly: - - ./configure --host=i386-intel-osf1 --with-zlib=/usr/community/hdf5/ZLIB - - Skip the "--with-zlib=..." option if you do not wish to include the zlib - compression feature. Without the zlib compression feature, the library - will not be able to access zlib compressed datasets. - - You may safely ignore the WARNING message, - ========= - configure: WARNING: If you wanted to set the --build type, don't use --host. - If a cross compiler is detected then cross compile mode will be used. - ========= - You may add the option "--build=i386-intel-osf1" to get rid of the WARNING. - - (The previous bugs in src/Makefile and test/Makefile have been resolved. - You don't need to edit them any more.) - -3) gmake H5detect - - -FROM JANUS, - -4) cd <hdf5> - -5) gmake H5Tinit.c - - -FROM SASN100, - -6) gmake - - -When everything is finished compiling and linking, -you can run the tests by -FROM JANUS, - -7) gmake check - Sometimes the "gmake check" fails in the sub-directories of test - or tools with a message as "print not found". This is due to the - "gmake" of Janus thinking some binary code needs to be recompiled. - The easiest way to fix it is - FROM SASN100 - cd <hdf5>/test # or cd <hdf5>/tools - gmake clean; gmake # re-make all binary - - -Once satisfied with the test results, you can install -the software by -FROM SASN100, - -8) gmake install - - diff --git a/release_docs/INSTALL_VFL b/release_docs/INSTALL_VFL deleted file mode 100644 index 4385c26..0000000 --- a/release_docs/INSTALL_VFL +++ /dev/null @@ -1,131 +0,0 @@ - Installation Instructions for HDF5 - with Different Virtual File Layer - -Support for SRB and GASS drivers was removed. See RELEASE.txt file - * * * - -This file contains installation instructions for HDF5 with certain Virtual File -Layer to handle file I/O. We currently have documented SRB and Globus-GASS. - - - - --- Part I. SRB --- -I. Overview ------------ -This part contains instructions for remote-accessing HDF5 through SRB. The -SRB version 1.1.7 on Sun Solaris 2.7 platform has been tested. If you have -difficulties installing the software in your system, please send mails to me -(Raymond Lu) at - - slu@ncsa.uiuc.edu - -First, you must obtain and unpack the HDF5 source as described in the file -INSTALL. You need the SRB library(client part) installed. You should also -have access to SRB server. - - -The Storage Resource Broker(SRB) from San Diego Supercomputer Center is client- -server middleware that provides a uniform interface for connecting to -heterogeneous data resources over a network and accessig replicated data sets. -SRB, in conjunction with the Metadata Catalog(MCAT), provides a way to access -data sets and resources based on their attributes rather than their names or -physical locations. Their webpage is at http://www.npaci.edu/Research/DI/srb. - -HDF5 is built on the top of SRB as a client to remotely access files on SRB -server through SRB. Right now, HDF-SRB only support low-level file transfer of -SRB. The MCAT part is not supported yet. Low-level file transfer means files -are treated just like Unix type files. Files can be read, written and -appended. Partial access(read and write to a chunk of file without transferrig -the whole) is also supported. - - -II. Installation Steps ----------------------- -The installation steps are similar to the ones in INSTALL file: - -1. Run 'configure' file with SRB options: - configure --with-srb=$SRB/include,$SRB/lib - where $SRB is your SRB installed library directory. - - For example, below is a script file to run 'configure': - #! /bin/sh - # how to configure to use the SRB - - SRB_DIR=/afs/ncsa.uiuc.edu/projects/hdf/users/slu/srb_install - configure --with-srb=$SRB_DIR/include,$SRB_DIR/lib - -2. Run 'make' - -3. Run 'make check' - -4. Run 'make install' - -5. Run testing program(Optional): - Go to the testing directory(cd test) and run srb_write, srb_read, - srb_append. Actually, these tests have been run in step 3. - - srb_write: Connect to SRB server, write an HDF5 file with an integer - dataset to SRB server. - srb_read: Connect to SRB server, read part of HDF5 file on the SRB server. - srb_append: Connect to SRB server, append an integer dataset to an existent - HDF5 file on the SRB server. - -6. For using HDF-SRB, please read comments in srb_write.c, srb_read.c, - srb_append.c in the hdf5/test directory. - - - - --- Part II. Globus-GASS --- - -I. Overview ------------ -This part contains instructions for remote-accessing HDF5 through Globus-GASS. -The SGI IRIX64(and IRIX) 6.5 platform have been tested. If you have -difficulties installing the software in your system, please send mails to me -(Raymond Lu) at - slu@ncsa.uiuc.edu - -First, you must obtain and unpack the HDF5 source as described in the file -INSTALL. You need the Globus 1.1.x and SSL(should have come with Globus) -packages. - -HDF5 is built on the top of Globus-GASS(1.1.x) to handle remote access. -Globus-GASS(1.1.x) only supports HTTP and HTTPS protocals for 'whole file -read and write'. More features may be added in the future. - -II. Installation Steps ----------------------- -The installation steps are similar to the ones in INSTALL file: - -1. Run 'configure' file with SSL and GASS options: - configure --with-ssl=$SSL/lib --with-gass=$GASS/include,$GASS/lib - where $SSL is your SSL directory, and $GASS is your Globus directory. - - For example, below is a script file to run 'configure': - #! /bin/sh - # how to configure to use the Globus-GASS(1.1.x) - - GASS_DIR=/usr/local/globus-install-1.1.1/development/mips-sgi-irix6.5-64_nothreads_standard_debug - SSL_LIB=/usr/local/ssl/lib - - configure --with-ssl=$SSL_LIB --with-gass=$GASS_DIR/include,$GASS_DIR/lib - -2. Run 'make' - -3. Run 'make check' - -4. Run 'make install' - -5. Run testing program: - There is one read testing program called 'gass_read' in the 'test' - directory. It does whole file read through HTTP protocal. The URL is - hard coded as - http://hdf.ncsa.uiuc.edu/GLOBUS/a.h5 - - The writing really depends on your web server. You have to set up your - server in right way to accept writing in files. We have tested it using - Apache Server(1.3.12) without authentication. If you need more details - about our testing, please contact us. Globus suggests using their GASS - server. - - There is another program called 'gass_append' used for experiments. |