summaryrefslogtreecommitdiffstats
diff options
context:
space:
mode:
-rw-r--r--Makefile.in1
-rw-r--r--c++/Makefile.in1
-rw-r--r--c++/examples/Makefile.in1
-rw-r--r--c++/src/Makefile.in1
-rw-r--r--c++/test/Makefile.in1
-rw-r--r--config/cmake/libhdf5.settings.cmake.in1
-rwxr-xr-xconfigure893
-rw-r--r--configure.ac361
-rw-r--r--examples/Makefile.in1
-rw-r--r--fortran/Makefile.in1
-rw-r--r--fortran/examples/Makefile.in1
-rw-r--r--fortran/src/Makefile.in1
-rw-r--r--fortran/test/Makefile.in1
-rw-r--r--fortran/testpar/Makefile.in1
-rw-r--r--hl/Makefile.in1
-rw-r--r--hl/c++/Makefile.in1
-rw-r--r--hl/c++/examples/Makefile.in1
-rw-r--r--hl/c++/src/Makefile.in1
-rw-r--r--hl/c++/test/Makefile.in1
-rw-r--r--hl/examples/Makefile.in1
-rw-r--r--hl/fortran/Makefile.in1
-rw-r--r--hl/fortran/examples/Makefile.in1
-rw-r--r--hl/fortran/src/Makefile.in1
-rw-r--r--hl/fortran/test/Makefile.in1
-rw-r--r--hl/src/Makefile.in1
-rw-r--r--hl/test/Makefile.in1
-rw-r--r--hl/tools/Makefile.in1
-rw-r--r--hl/tools/gif2h5/Makefile.in1
-rw-r--r--src/H5config.h.in12
-rw-r--r--src/H5private.h36
-rw-r--r--src/Makefile.in1
-rw-r--r--src/libhdf5.settings.in1
-rw-r--r--test/Makefile.in1
-rw-r--r--testpar/Makefile.in1
-rw-r--r--testpar/t_pflush2.c9
-rw-r--r--tools/Makefile.in1
-rw-r--r--tools/h5copy/Makefile.in1
-rw-r--r--tools/h5diff/Makefile.in1
-rw-r--r--tools/h5dump/Makefile.in1
-rw-r--r--tools/h5import/Makefile.in1
-rw-r--r--tools/h5jam/Makefile.in1
-rw-r--r--tools/h5ls/Makefile.in1
-rw-r--r--tools/h5repack/Makefile.in1
-rw-r--r--tools/h5stat/Makefile.in1
-rw-r--r--tools/lib/Makefile.in1
-rw-r--r--tools/misc/Makefile.in1
-rw-r--r--tools/perform/Makefile.in1
-rw-r--r--tools/perform/perf.c5
48 files changed, 113 insertions, 1245 deletions
diff --git a/Makefile.in b/Makefile.in
index bed7078..a47b9d9 100644
--- a/Makefile.in
+++ b/Makefile.in
@@ -328,7 +328,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/c++/Makefile.in b/c++/Makefile.in
index de87fa5..e5aa783 100644
--- a/c++/Makefile.in
+++ b/c++/Makefile.in
@@ -488,7 +488,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/c++/examples/Makefile.in b/c++/examples/Makefile.in
index 90dfed3..773f842 100644
--- a/c++/examples/Makefile.in
+++ b/c++/examples/Makefile.in
@@ -436,7 +436,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/c++/src/Makefile.in b/c++/src/Makefile.in
index 3b71cb4..136c3a5 100644
--- a/c++/src/Makefile.in
+++ b/c++/src/Makefile.in
@@ -502,7 +502,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/c++/test/Makefile.in b/c++/test/Makefile.in
index 49c08e4..c8edd4d 100644
--- a/c++/test/Makefile.in
+++ b/c++/test/Makefile.in
@@ -493,7 +493,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/config/cmake/libhdf5.settings.cmake.in b/config/cmake/libhdf5.settings.cmake.in
index 0c0befa..a036ff8 100644
--- a/config/cmake/libhdf5.settings.cmake.in
+++ b/config/cmake/libhdf5.settings.cmake.in
@@ -65,4 +65,3 @@ Clear file buffers before write: @HDF5_Enable_Clear_File_Buffers@
Function Stack Tracing: @HDF5_ENABLE_CODESTACK@
Strict File Format Checks: @HDF5_STRICT_FORMAT_CHECKS@
Optimization Instrumentation: @HDF5_Enable_Instrument@
- Large File Support (LFS): @HDF5_ENABLE_LARGE_FILE@
diff --git a/configure b/configure
index 6322220..cce2404 100755
--- a/configure
+++ b/configure
@@ -1,5 +1,5 @@
#! /bin/sh
-# From configure.ac Id: configure.ac 26174 2015-02-14 01:25:22Z acheng .
+# From configure.ac Id: configure.ac 26178 2015-02-16 00:17:46Z hdftest .
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for HDF5 1.8.15-snap11.
#
@@ -787,7 +787,6 @@ DIRECT_VFD
HAVE_DMALLOC
CODESTACK
INSTRUMENT
-LARGEFILE
HDF5_HL
CXX
HDF_CXX
@@ -905,8 +904,6 @@ enable_libtool_lock
enable_static_exec
enable_sharedlib_rpath
enable_production
-enable_largefile
-enable_linux_lfs
with_fnord
with_dmalloc
with_zlib
@@ -1592,10 +1589,6 @@ Optional Features:
--disable-sharedlib-rpath
Disable use of the '=Wl,-rpath' linker option
--enable-production Determines how to run the compiler.
- --disable-largefile omit support for large files
- --disable-linux-lfs Disable support for large (64-bit) files on Linux.
- This option is deprecated in favor of
- --disable-largefile.
--enable-threadsafe Enable thread-safe capability
--enable-debug=all Turn on debugging in all packages. One may also
specify a comma-separated list of package names
@@ -4059,7 +4052,6 @@ $as_echo "done" >&6; }
## HDF_CXX: whether C++ is enabled. Default no.
## CXX: C++ compiler.
## HDF5_HL: whether high-level library is enabled. Default is yes.
-## LARGEFILE: whether largefile support is enabled. Default yes.
## INSTRUMENT: whether INSTRUMENT is enabled. No default set here.
## CODESTACK: whether CODESTACK is enabled. Default no.
## HAVE_DMALLOC: whether system has dmalloc support. Default no.
@@ -4080,7 +4072,6 @@ $as_echo "done" >&6; }
HDF_CXX=no
HDF_CXX=no
HDF5_HL=yes
- LARGEFILE=yes
CODESTACK=no
HAVE_DMALLOC=no
@@ -7944,16 +7935,14 @@ fi
## a parallel library even if configure wasn't
## able to find some header file or library that
## might be required. This is defined if the
-## compiler looks like a parallel compiler (e.g.,
-## mpicc or mpcc) or if the user explicitly states
+## user explicitly states
## that a parallel library is being built by supplying
## the `--enable-parallel' configure switch.
##
## PARALLEL -- This variable is set to a non-null value if
-## configure thinks we're compiling a parallel
-## version of the library.
+## we're building a parallel version of the library.
##
-## RUNSERIAL -- This is a command which will be prepended to
+## RUNSERIAL -- This is a command which will be prepended to
## the executable name to run the executable using
## a single process. For serial versions of the
## library this will normally be empty. For parallel
@@ -7979,146 +7968,6 @@ fi
## ----------------------------------------------------------------------
-## If the compiler is obviously a parallel compiler then we're building
-## a parallel version of hdf5 and should define HAVE_PARALLEL. Furthermore,
-## the name of the compiler might tell us how to run the resulting
-## executable. For `mpicc' the executable should be run with `mpiexec' from
-## the same directory as mpicc if it exists.
-##
-case "$CC_BASENAME" in
- mpicc)
- ## The mpich compiler. Use mpiexec from the same directory if it
- ## exists.
- PARALLEL=mpicc
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for mpiexec" >&5
-$as_echo_n "checking for mpiexec... " >&6; }
-
- ## Find the path where mpicc is located.
- cmd="`echo $CC | cut -f1 -d' '`"
- if (echo $cmd | grep / >/dev/null); then
- path="`echo $cmd | sed 's/\(.*\)\/.*$/\1/'`"
- else
- for path in `echo $PATH | ${TR} ":" " "`; do
- if test -x $path/$cmd; then
- break
- fi
- done
- fi
-
- ## Is there an mpiexec at that path?
- if test -x $path/mpiexec; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: result: $path/mpiexec" >&5
-$as_echo "$path/mpiexec" >&6; }
- RUNSERIAL="${RUNSERIAL:-none}"
-
- if test -z "$RUNPARALLEL"; then
- RUNPARALLEL="$path/mpiexec -n \$\${NPROCS:=6}"
- fi
- else
- { $as_echo "$as_me:${as_lineno-$LINENO}: result: none" >&5
-$as_echo "none" >&6; }
- fi
- ;;
-
- mpcc|mpcc_r)
- ## The IBM compiler
- PARALLEL="$CC_BASENAME"
- ;;
-
- *)
- ## Probably not a parallel compiler, but if `--enable-parallel'
- ## is defined below then we're still building a parallel hdf5.
- ;;
-esac
-
-## ----------------------------------------------------------------------
-## If the Fortran compiler is obviously a parallel compiler then we're
-## building a parallel version of hdf5 and should define HAVE_PARALLEL.
-## Furthermore, the name of the compiler might tell us how to run the
-## resulting executable. For `mpif90' the executable should be run with
-## `mpiexec' from the same directory as mpif90 if it exists.
-##
-
-if test "X$HDF_FORTRAN" = "Xyes" ; then
- ## Change to the Fortran 90 language
- ac_ext=${ac_fc_srcext-f}
-ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5'
-ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_fc_compiler_gnu
-
-
- case "$FC" in
- *mpif90*)
- ## The Fortran mpich compiler. Use mpiexec from the same directory
- ## if it exists.
- PARALLEL=mpif90
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for mpiexec" >&5
-$as_echo_n "checking for mpiexec... " >&6; }
-
- ## Find the path where mpif90 is located.
- cmd=`echo $FC |cut -f1 -d' '`
- if (echo $cmd |grep / >/dev/null); then
- path="`echo $cmd |sed 's/\(.*\)\/.*$/\1/'`"
- else
- for path in `echo $PATH | ${TR} ":" " "`; do
- if test -x $path/$cmd; then
- break;
- fi
- done
- fi
-
- ## Is there an mpiexec at that path?
- if test -x $path/mpiexec; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: result: $path/mpiexec" >&5
-$as_echo "$path/mpiexec" >&6; }
- RUNSERIAL="${RUNSERIAL:-none}"
-
- if test -z "$RUNPARALLEL"; then
- RUNPARALLEL="$path/mpiexec -n \$\${NPROCS:=6}"
- fi
- else
- { $as_echo "$as_me:${as_lineno-$LINENO}: result: none" >&5
-$as_echo "none" >&6; }
- fi
- ;;
-
- *mpxlf* | *mpxlf_r* | *mpxlf90* | *mpxlf90_r* | *mpxlf95* | *mpxlf95_r*)
- ## The IBM compiler
- PARALLEL="$FC"
- ;;
-
- *)
- ## Probably not a parallel compiler, but if `--enable-parallel'
- ## is defined below then we're still building a parallel hdf5.
- ;;
- esac
-
- ## Change to the C language
- ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-fi
-
-## -----------------------------------------------------------------------------
-## If shared libraries are being used with parallel, disable them, unless the
-## user explicity enables them via the '--enable-shared' option.
-
-if test "X${enable_shared}" = "X" -a "X${enable_parallel}" = "Xyes"; then
- echo ' shared libraries disabled in parallel'
- enable_shared="no"
-elif test "X${enable_shared}" = "Xyes" -a "X${enable_parallel}" = "Xyes"; then
- echo ' shared libraries explicitly enabled by user'
-elif test "X${enable_shared}" = "X" -a "X${PARALLEL}" != "X"; then
- echo ' shared libraries disabled when a parallel compiler is being used'
- enable_shared="no"
-elif test "X${enable_shared}" = "Xyes" -a "X${PARALLEL}" != "X"; then
- echo ' shared libraries explicitly enabled by user'
-fi
-
-## ----------------------------------------------------------------------
## Fortran libraries are not currently supported on Mac. Disable them.
## (this is overridable with --enable-unsupported).
##
@@ -23235,111 +23084,15 @@ $as_echo "no" >&6; }
fi
## ----------------------------------------------------------------------
-## Test for Largefile support.
-##
-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if configure should try to set up large file support" >&5
-$as_echo_n "checking if configure should try to set up large file support... " >&6; }
-
-# Check whether --enable-largefile was given.
-if test "${enable_largefile+set}" = set; then :
- enableval=$enable_largefile;
-fi
-
-
-## The linux-lfs option is deprecated, but if it is used to disable
-## largefile support on linux and the largefile option is not specified,
-## then go ahead and disable large-file support.
-case "$host_cpu-$host_vendor-$host_os" in
- *linux*)
- # Check whether --enable-linux-lfs was given.
-if test "${enable_linux_lfs+set}" = set; then :
- enableval=$enable_linux_lfs;
-fi
-
-
- if test "$enable_linux_lfs" = no; then
- if test "$enable_largefile" != yes; then
- enable_largefile=no
- fi
- fi
- ;;
-esac
-
-## If largefile support is enabled, then set up appropriate compiler options.
-if test "$enable_largefile" != no; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
-$as_echo "yes" >&6; }
-
- ## Check for needed compiler options. This check is pulled drectly
- ## from autoconf's AC_SYS_LARGEFILE macro, as of Autoconf v2.65.
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for special C compiler options needed for large files" >&5
-$as_echo_n "checking for special C compiler options needed for large files... " >&6; }
-if ${ac_cv_sys_largefile_CC+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- ac_cv_sys_largefile_CC=no
- if test "$GCC" != yes; then
- ac_save_CC=$CC
- while :; do
- ## IRIX 6.2 and later do not support large files by default,
- ## so use the C compiler's -n32 option if that helps.
- cat confdefs.h - <<_ACEOF >conftest.$ac_ext
-/* end confdefs.h. */
-#include <sys/types.h>
- /* Check that off_t can represent 2**63 - 1 correctly.
- We can't simply define LARGE_OFF_T to be 9223372036854775807,
- since some C++ compilers masquerading as C compilers
- incorrectly reject 9223372036854775807. */
-#define LARGE_OFF_T (((off_t) 1 << 62) - 1 + ((off_t) 1 << 62))
- int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721
- && LARGE_OFF_T % 2147483647 == 1)
- ? 1 : -1];
-#ifdef FC_DUMMY_MAIN
-#ifndef FC_DUMMY_MAIN_EQ_F77
-# ifdef __cplusplus
- extern "C"
-# endif
- int FC_DUMMY_MAIN() { return 1; }
-#endif
-#endif
-int
-main ()
-{
-
- ;
- return 0;
-}
-_ACEOF
- if ac_fn_c_try_compile "$LINENO"; then :
- break
-fi
-rm -f core conftest.err conftest.$ac_objext
- CC="$CC -n32"
- if ac_fn_c_try_compile "$LINENO"; then :
- ac_cv_sys_largefile_CC=' -n32'; break
-fi
-rm -f core conftest.err conftest.$ac_objext
- break
- done
- CC=$ac_save_CC
- rm -f conftest.$ac_ext
- fi
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_sys_largefile_CC" >&5
-$as_echo "$ac_cv_sys_largefile_CC" >&6; }
- if test "$ac_cv_sys_largefile_CC" != no; then
- CC=$CC$ac_cv_sys_largefile_CC
- fi
-
- ## Use the macro _AC_SYS_LARGEFILE_MACRO_VALUE to test defines
- ## that might need to be set for largefile support to behave
- ## correctly. This macro is defined in acsite.m4 and overrides
- ## the version provided by Autoconf (as of v2.65). The custom
- ## macro additionally adds the appropriate defines to AM_CPPFLAGS
- ## so that later configure checks have them visible.
-
- ## Check for _FILE_OFFSET_BITS
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for _FILE_OFFSET_BITS value needed for large files" >&5
+## Use the macro _AC_SYS_LARGEFILE_MACRO_VALUE to test defines
+## that might need to be set for largefile support to behave
+## correctly. This macro is defined in acsite.m4 and overrides
+## the version provided by Autoconf (as of v2.65). The custom
+## macro additionally adds the appropriate defines to AM_CPPFLAGS
+## so that later configure checks have them visible.
+
+## Check for _FILE_OFFSET_BITS
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for _FILE_OFFSET_BITS value needed for large files" >&5
$as_echo_n "checking for _FILE_OFFSET_BITS value needed for large files... " >&6; }
if ${ac_cv_sys_file_offset_bits+:} false; then :
$as_echo_n "(cached) " >&6
@@ -23425,9 +23178,9 @@ _ACEOF
esac
rm -rf conftest*
- ## Check for _LARGE_FILES
- if test "$ac_cv_sys_file_offset_bits" = unknown; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for _LARGE_FILES value needed for large files" >&5
+## Check for _LARGE_FILES
+if test "$ac_cv_sys_file_offset_bits" = unknown; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for _LARGE_FILES value needed for large files" >&5
$as_echo_n "checking for _LARGE_FILES value needed for large files... " >&6; }
if ${ac_cv_sys_large_files+:} false; then :
$as_echo_n "(cached) " >&6
@@ -23512,68 +23265,6 @@ _ACEOF
AM_CPPFLAGS="-D_LARGE_FILES=$ac_cv_sys_large_files $AM_CPPFLAGS";;
esac
rm -rf conftest*
- fi
-
- ## Now actually test to see if we can create large files after we've
- ## checked for any needed defines.
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking if large (64-bit) files are supported on this system." >&5
-$as_echo_n "checking if large (64-bit) files are supported on this system.... " >&6; }
- if ${hdf5_cv_have_lfs+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- if test "$cross_compiling" = yes; then :
- { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-as_fn_error $? "cannot run test program while cross compiling
-See \`config.log' for more details" "$LINENO" 5; }
-else
- cat confdefs.h - <<_ACEOF >conftest.$ac_ext
-/* end confdefs.h. */
-
- #include <stdio.h>
- #include <unistd.h>
- #include <stdlib.h>
- #include <fcntl.h>
- #define BIG_FILE (off_t)0x80000000UL
- int main(void) {
- int fd;
- if ((fd=open("test.conf", O_RDWR|O_TRUNC|O_CREAT, 0666)) < 0) exit(1);
- if (lseek(fd, BIG_FILE, SEEK_SET)!=BIG_FILE) exit(1);
- if (5!=write(fd, "hello", (size_t)5)) exit(1);
- if (lseek(fd, 2*BIG_FILE, SEEK_SET) != 2*BIG_FILE) exit(1);
- if (5!=write(fd, "hello", (size_t)5)) exit(1);
- if (unlink("test.conf") < 0) exit(1);
- exit(0);
- }
-
-_ACEOF
-if ac_fn_c_try_run "$LINENO"; then :
- hdf5_cv_have_lfs=yes
-else
- hdf5_cv_have_lfs=no
-fi
-rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \
- conftest.$ac_objext conftest.beam conftest.$ac_ext
-fi
-
-fi
-
-
- if test "X${hdf5_cv_have_lfs}" = "Xyes"; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
-$as_echo "yes" >&6; }
- LARGEFILE="yes"
- fi
- if test "X${hdf5_cv_have_lfs}" = "Xno"; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
-$as_echo "no" >&6; }
- LARGEFILE="no"
- fi
-
-else
- LARGEFILE="no"
- { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
-$as_echo "no" >&6; }
fi
## ----------------------------------------------------------------------
@@ -23581,11 +23272,9 @@ fi
##
case "$host_cpu-$host_vendor-$host_os" in
*linux*)
- ## If largefile support is enabled, then make available various
- ## LFS-related routines using the following _LARGEFILE*_SOURCE macros.
- if test "X$LARGEFILE" != "Xno"; then
- AM_CPPFLAGS="-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS"
- fi
+ ## Make available various LFS-related routines using the following
+ ## _LARGEFILE*_SOURCE macros.
+ AM_CPPFLAGS="-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS"
## Add POSIX support on Linux systems, so <features.h> defines
## __USE_POSIX, which is required to get the prototype for fdopen
@@ -28232,10 +27921,7 @@ rm -f confcache
## What header files and libraries do we have to look for for parallel
## support? For the most part, search paths are already specified with
-## CPPFLAGS and LDFLAGS or are known to the compiler. If the user says
-## `--disable-parallel' but specifies a known parallel compiler (like mpicc
-## or mpcc) then parallel support is enabled but configure doesn't search
-## for any parallel header files or libraries.
+## CPPFLAGS and LDFLAGS or are known to the compiler.
##
# Check whether --enable-parallel was given.
if test "${enable_parallel+set}" = set; then :
@@ -28260,26 +27946,11 @@ if test "X${ALLOW_UNSUPPORTED}" != "Xyes"; then
fi
fi
-## It's possible to build in parallel by specifying a parallel compiler
-## without using the --enable-parallel flag. This isn't allowed with
-## C++ or threadsafe, either, unless the --enable-unsupported flag
-## has also been specified.
-if test "X${ALLOW_UNSUPPORTED}" != "Xyes"; then
- if test "X${PARALLEL}" != "X" -a "X${enable_cxx}" = "Xyes" ; then
- as_fn_error $? "An MPI compiler is being used; --enable-cxx is not allowed. Use --enable-unsupported to override this error." "$LINENO" 5
- fi
- if test "X${PARALLEL}" != "X" -a "X${THREADSAFE}" = "Xyes"; then
- as_fn_error $? "An MPI compiler is being used; --enable-threadsafe is not allowed. Use --enable-unsupported to override this error." "$LINENO" 5
- fi
-fi
-
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for parallel support files" >&5
$as_echo_n "checking for parallel support files... " >&6; }
case "X-$enable_parallel" in
X-|X-no|X-none)
- ## Either we are not compiling for parallel or the header and
- ## library files and locations are known to the compiler (this is
- ## the case for a correct installation of mpicc for instance).
+ ## We are not compiling for parallel.
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: skipped" >&5
$as_echo "skipped" >&6; }
;;
@@ -28291,185 +27962,12 @@ $as_echo "skipped" >&6; }
$as_echo "provided by compiler" >&6; }
PARALLEL=yes
- ## Try link a simple MPI program. If fail, try again with -lmpi and
- ## -lmpich.
+ ## Try link a simple MPI program.
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether a simple MPI-IO C program can be linked" >&5
+$as_echo_n "checking whether a simple MPI-IO C program can be linked... " >&6; }
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
-
-#ifdef FC_DUMMY_MAIN
-#ifndef FC_DUMMY_MAIN_EQ_F77
-# ifdef __cplusplus
- extern "C"
-# endif
- int FC_DUMMY_MAIN() { return 1; }
-#endif
-#endif
-int
-main ()
-{
-MPI_Init()
- ;
- return 0;
-}
-_ACEOF
-if ac_fn_c_try_link "$LINENO"; then :
-
-else
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lmpi" >&5
-$as_echo_n "checking for MPI_Init in -lmpi... " >&6; }
-if ${ac_cv_lib_mpi_MPI_Init+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lmpi $LIBS"
-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
-/* end confdefs.h. */
-
-/* Override any GCC internal prototype to avoid an error.
- Use char because int might match the return type of a GCC
- builtin and then its argument prototype would still apply. */
-#ifdef __cplusplus
-extern "C"
-#endif
-char MPI_Init ();
-#ifdef FC_DUMMY_MAIN
-#ifndef FC_DUMMY_MAIN_EQ_F77
-# ifdef __cplusplus
- extern "C"
-# endif
- int FC_DUMMY_MAIN() { return 1; }
-#endif
-#endif
-int
-main ()
-{
-return MPI_Init ();
- ;
- return 0;
-}
-_ACEOF
-if ac_fn_c_try_link "$LINENO"; then :
- ac_cv_lib_mpi_MPI_Init=yes
-else
- ac_cv_lib_mpi_MPI_Init=no
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpi_MPI_Init" >&5
-$as_echo "$ac_cv_lib_mpi_MPI_Init" >&6; }
-if test "x$ac_cv_lib_mpi_MPI_Init" = xyes; then :
- cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBMPI 1
-_ACEOF
-
- LIBS="-lmpi $LIBS"
-
-else
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lmpich" >&5
-$as_echo_n "checking for MPI_Init in -lmpich... " >&6; }
-if ${ac_cv_lib_mpich_MPI_Init+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lmpich $LIBS"
-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
-/* end confdefs.h. */
-
-/* Override any GCC internal prototype to avoid an error.
- Use char because int might match the return type of a GCC
- builtin and then its argument prototype would still apply. */
-#ifdef __cplusplus
-extern "C"
-#endif
-char MPI_Init ();
-#ifdef FC_DUMMY_MAIN
-#ifndef FC_DUMMY_MAIN_EQ_F77
-# ifdef __cplusplus
- extern "C"
-# endif
- int FC_DUMMY_MAIN() { return 1; }
-#endif
-#endif
-int
-main ()
-{
-return MPI_Init ();
- ;
- return 0;
-}
-_ACEOF
-if ac_fn_c_try_link "$LINENO"; then :
- ac_cv_lib_mpich_MPI_Init=yes
-else
- ac_cv_lib_mpich_MPI_Init=no
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpich_MPI_Init" >&5
-$as_echo "$ac_cv_lib_mpich_MPI_Init" >&6; }
-if test "x$ac_cv_lib_mpich_MPI_Init" = xyes; then :
- cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBMPICH 1
-_ACEOF
-
- LIBS="-lmpich $LIBS"
-
-else
- PARALLEL=no
-fi
-
-fi
-
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-
- ## Then try link a simple MPI-IO program. If fail, try again with
- ## -lmpio.
- if test "X$PARALLEL" = "Xyes"; then
- cat confdefs.h - <<_ACEOF >conftest.$ac_ext
-/* end confdefs.h. */
-
-#ifdef FC_DUMMY_MAIN
-#ifndef FC_DUMMY_MAIN_EQ_F77
-# ifdef __cplusplus
- extern "C"
-# endif
- int FC_DUMMY_MAIN() { return 1; }
-#endif
-#endif
-int
-main ()
-{
-MPI_File_open()
- ;
- return 0;
-}
-_ACEOF
-if ac_fn_c_try_link "$LINENO"; then :
-
-else
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPI_File_open in -lmpio" >&5
-$as_echo_n "checking for MPI_File_open in -lmpio... " >&6; }
-if ${ac_cv_lib_mpio_MPI_File_open+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lmpio $LIBS"
-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
-/* end confdefs.h. */
-
-/* Override any GCC internal prototype to avoid an error.
- Use char because int might match the return type of a GCC
- builtin and then its argument prototype would still apply. */
-#ifdef __cplusplus
-extern "C"
-#endif
-char MPI_File_open ();
+#include <mpi.h>
#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
@@ -28481,37 +27979,22 @@ char MPI_File_open ();
int
main ()
{
-return MPI_File_open ();
+ MPI_Init(0, (void *)0);
+ MPI_File_open(0, (void *)0, 0, 0, (void *)0);
;
return 0;
}
_ACEOF
if ac_fn_c_try_link "$LINENO"; then :
- ac_cv_lib_mpio_MPI_File_open=yes
-else
- ac_cv_lib_mpio_MPI_File_open=no
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpio_MPI_File_open" >&5
-$as_echo "$ac_cv_lib_mpio_MPI_File_open" >&6; }
-if test "x$ac_cv_lib_mpio_MPI_File_open" = xyes; then :
- cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBMPIO 1
-_ACEOF
-
- LIBS="-lmpio $LIBS"
-
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
+$as_echo "yes" >&6; }
else
- PARALLEL=no
-fi
-
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+ as_fn_error $? "unable to link a simple MPI-IO C program" "$LINENO" 5
fi
rm -f core conftest.err conftest.$ac_objext \
conftest$ac_exeext conftest.$ac_ext
- fi
if test "X$HDF_FORTRAN" = "Xyes"; then
## Change to the Fortran 90 language
@@ -28521,7 +28004,9 @@ ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest
ac_compiler_gnu=$ac_cv_fc_compiler_gnu
- ## Try link a simple MPI program. If fail, try again with -lmpi.
+ ## Try link a simple MPI program.
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether a simple MPI-IO Fortran program can be linked" >&5
+$as_echo_n "checking whether a simple MPI-IO Fortran program can be linked... " >&6; }
cat > conftest.$ac_ext <<_ACEOF
program main
@@ -28531,98 +28016,15 @@ ac_compiler_gnu=$ac_cv_fc_compiler_gnu
end
_ACEOF
if ac_fn_fc_try_link "$LINENO"; then :
-
-else
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for mpi_file_open in -lmpi" >&5
-$as_echo_n "checking for mpi_file_open in -lmpi... " >&6; }
-if ${ac_cv_lib_mpi_mpi_file_open+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lmpi $LIBS"
-cat > conftest.$ac_ext <<_ACEOF
- program main
- call mpi_file_open
- end
-_ACEOF
-if ac_fn_fc_try_link "$LINENO"; then :
- ac_cv_lib_mpi_mpi_file_open=yes
-else
- ac_cv_lib_mpi_mpi_file_open=no
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpi_mpi_file_open" >&5
-$as_echo "$ac_cv_lib_mpi_mpi_file_open" >&6; }
-if test "x$ac_cv_lib_mpi_mpi_file_open" = xyes; then :
- cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBMPI 1
-_ACEOF
-
- LIBS="-lmpi $LIBS"
-
-else
- PARALLEL=no
-fi
-
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-
- ## Then try link a simple MPI-IO program. If fail, try again with
- ## -lmpio.
- if test "X$PARALLEL" = "Xyes"; then
- cat > conftest.$ac_ext <<_ACEOF
-
- program main
- include 'mpif.h'
- integer:: ierr
- call mpi_file_open( ierr )
- end
-_ACEOF
-if ac_fn_fc_try_link "$LINENO"; then :
-
-else
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for mpi_file_open in -lmpio" >&5
-$as_echo_n "checking for mpi_file_open in -lmpio... " >&6; }
-if ${ac_cv_lib_mpio_mpi_file_open+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-lmpio $LIBS"
-cat > conftest.$ac_ext <<_ACEOF
- program main
- call mpi_file_open
- end
-_ACEOF
-if ac_fn_fc_try_link "$LINENO"; then :
- ac_cv_lib_mpio_mpi_file_open=yes
-else
- ac_cv_lib_mpio_mpi_file_open=no
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpio_mpi_file_open" >&5
-$as_echo "$ac_cv_lib_mpio_mpi_file_open" >&6; }
-if test "x$ac_cv_lib_mpio_mpi_file_open" = xyes; then :
- cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBMPIO 1
-_ACEOF
-
- LIBS="-lmpio $LIBS"
-
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
+$as_echo "yes" >&6; }
else
- PARALLEL=no
-fi
-
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+ as_fn_error $? "unable to link a simple MPI-IO Fortran program" "$LINENO" 5
fi
rm -f core conftest.err conftest.$ac_objext \
conftest$ac_exeext conftest.$ac_ext
- fi
## Change to the C language
ac_ext=c
@@ -28634,19 +28036,6 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
fi
## Set RUNPARALLEL to mpiexec if not set yet.
- ## Check for building on Cray if RUNPARALLEL is not yet set by checking
- ## for 'aprun' command (which is the parallel job launcher, like mpiexec).
- if test "X$PARALLEL" = "Xyes" -a -z "$RUNPARALLEL"; then
- ## Find the path where aprun is located.
- for path in `echo $PATH | ${TR} ":" " "`; do
- if test -x $path/aprun; then
- RUNPARALLEL="aprun -q -n \$\${NPROCS:=6}"
- break;
- fi
- done
- fi
-
- ## Set RUNPARALLEL to mpiexec if not set yet.
if test "X$PARALLEL" = "Xyes" -a -z "$RUNPARALLEL"; then
RUNPARALLEL="mpiexec -n \$\${NPROCS:=6}"
fi
@@ -28683,39 +28072,6 @@ $as_echo_n "checking prefix for running in parallel... " >&6; }
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $RUNPARALLEL" >&5
$as_echo "$RUNPARALLEL" >&6; }
- ## Check that we can link a simple MPI and MPI-IO application
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether a simple MPI-IO program can be linked" >&5
-$as_echo_n "checking whether a simple MPI-IO program can be linked... " >&6; }
- cat confdefs.h - <<_ACEOF >conftest.$ac_ext
-/* end confdefs.h. */
-
-#ifdef FC_DUMMY_MAIN
-#ifndef FC_DUMMY_MAIN_EQ_F77
-# ifdef __cplusplus
- extern "C"
-# endif
- int FC_DUMMY_MAIN() { return 1; }
-#endif
-#endif
-int
-main ()
-{
-MPI_Init(); MPI_File_open();
- ;
- return 0;
-}
-_ACEOF
-if ac_fn_c_try_link "$LINENO"; then :
- { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
-$as_echo "yes" >&6; }
-else
- { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
-$as_echo "no" >&6; }
- as_fn_error $? "unable to link a simple MPI-IO application" "$LINENO" 5
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-
## There *must* be some way to run in parallel even if it's just the
## word `none'.
if test -z "$RUNPARALLEL"; then
@@ -28723,7 +28079,8 @@ rm -f core conftest.err conftest.$ac_objext \
fi
## If RUNSERIAL or RUNPARALLEL is the word `none' then replace it with
- ## the empty string.
+ ## the empty string. This means that no launch commands were requested,
+ ## so we will not use any launch commands.
if test "X$RUNSERIAL" = "Xnone"; then
RUNSERIAL=""
fi
@@ -28899,61 +28256,6 @@ else
unset MPE
fi
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPE_Init_mpi_io in -llmpe" >&5
-$as_echo_n "checking for MPE_Init_mpi_io in -llmpe... " >&6; }
-if ${ac_cv_lib_lmpe_MPE_Init_mpi_io+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-llmpe $LIBS"
-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
-/* end confdefs.h. */
-
-/* Override any GCC internal prototype to avoid an error.
- Use char because int might match the return type of a GCC
- builtin and then its argument prototype would still apply. */
-#ifdef __cplusplus
-extern "C"
-#endif
-char MPE_Init_mpi_io ();
-#ifdef FC_DUMMY_MAIN
-#ifndef FC_DUMMY_MAIN_EQ_F77
-# ifdef __cplusplus
- extern "C"
-# endif
- int FC_DUMMY_MAIN() { return 1; }
-#endif
-#endif
-int
-main ()
-{
-return MPE_Init_mpi_io ();
- ;
- return 0;
-}
-_ACEOF
-if ac_fn_c_try_link "$LINENO"; then :
- ac_cv_lib_lmpe_MPE_Init_mpi_io=yes
-else
- ac_cv_lib_lmpe_MPE_Init_mpi_io=no
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_lmpe_MPE_Init_mpi_io" >&5
-$as_echo "$ac_cv_lib_lmpe_MPE_Init_mpi_io" >&6; }
-if test "x$ac_cv_lib_lmpe_MPE_Init_mpi_io" = xyes; then :
- cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBLMPE 1
-_ACEOF
-
- LIBS="-llmpe $LIBS"
-
-else
- unset MPE
-fi
-
;;
*)
case "$withval" in
@@ -29074,62 +28376,6 @@ else
LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset MPE
fi
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPE_Init_mpi_io in -llmpe" >&5
-$as_echo_n "checking for MPE_Init_mpi_io in -llmpe... " >&6; }
-if ${ac_cv_lib_lmpe_MPE_Init_mpi_io+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-llmpe $LIBS"
-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
-/* end confdefs.h. */
-
-/* Override any GCC internal prototype to avoid an error.
- Use char because int might match the return type of a GCC
- builtin and then its argument prototype would still apply. */
-#ifdef __cplusplus
-extern "C"
-#endif
-char MPE_Init_mpi_io ();
-#ifdef FC_DUMMY_MAIN
-#ifndef FC_DUMMY_MAIN_EQ_F77
-# ifdef __cplusplus
- extern "C"
-# endif
- int FC_DUMMY_MAIN() { return 1; }
-#endif
-#endif
-int
-main ()
-{
-return MPE_Init_mpi_io ();
- ;
- return 0;
-}
-_ACEOF
-if ac_fn_c_try_link "$LINENO"; then :
- ac_cv_lib_lmpe_MPE_Init_mpi_io=yes
-else
- ac_cv_lib_lmpe_MPE_Init_mpi_io=no
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_lmpe_MPE_Init_mpi_io" >&5
-$as_echo "$ac_cv_lib_lmpe_MPE_Init_mpi_io" >&6; }
-if test "x$ac_cv_lib_lmpe_MPE_Init_mpi_io" = xyes; then :
- cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBLMPE 1
-_ACEOF
-
- LIBS="-llmpe $LIBS"
-
-else
- LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset MPE
-fi
-
-
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPE_Init_log in -lmpe" >&5
$as_echo_n "checking for MPE_Init_log in -lmpe... " >&6; }
@@ -29186,61 +28432,6 @@ else
unset MPE
fi
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPE_Init_mpi_io in -llmpe" >&5
-$as_echo_n "checking for MPE_Init_mpi_io in -llmpe... " >&6; }
-if ${ac_cv_lib_lmpe_MPE_Init_mpi_io+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- ac_check_lib_save_LIBS=$LIBS
-LIBS="-llmpe $LIBS"
-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
-/* end confdefs.h. */
-
-/* Override any GCC internal prototype to avoid an error.
- Use char because int might match the return type of a GCC
- builtin and then its argument prototype would still apply. */
-#ifdef __cplusplus
-extern "C"
-#endif
-char MPE_Init_mpi_io ();
-#ifdef FC_DUMMY_MAIN
-#ifndef FC_DUMMY_MAIN_EQ_F77
-# ifdef __cplusplus
- extern "C"
-# endif
- int FC_DUMMY_MAIN() { return 1; }
-#endif
-#endif
-int
-main ()
-{
-return MPE_Init_mpi_io ();
- ;
- return 0;
-}
-_ACEOF
-if ac_fn_c_try_link "$LINENO"; then :
- ac_cv_lib_lmpe_MPE_Init_mpi_io=yes
-else
- ac_cv_lib_lmpe_MPE_Init_mpi_io=no
-fi
-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-LIBS=$ac_check_lib_save_LIBS
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_lmpe_MPE_Init_mpi_io" >&5
-$as_echo "$ac_cv_lib_lmpe_MPE_Init_mpi_io" >&6; }
-if test "x$ac_cv_lib_lmpe_MPE_Init_mpi_io" = xyes; then :
- cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBLMPE 1
-_ACEOF
-
- LIBS="-llmpe $LIBS"
-
-else
- unset MPE
-fi
-
fi
;;
esac
diff --git a/configure.ac b/configure.ac
index df13802..3c06572 100644
--- a/configure.ac
+++ b/configure.ac
@@ -165,7 +165,6 @@ AC_MSG_RESULT([done])
## HDF_CXX: whether C++ is enabled. Default no.
## CXX: C++ compiler.
## HDF5_HL: whether high-level library is enabled. Default is yes.
-## LARGEFILE: whether largefile support is enabled. Default yes.
## INSTRUMENT: whether INSTRUMENT is enabled. No default set here.
## CODESTACK: whether CODESTACK is enabled. Default no.
## HAVE_DMALLOC: whether system has dmalloc support. Default no.
@@ -186,7 +185,6 @@ AC_SUBST([FC2003]) HDF_FORTRAN2003=no
AC_SUBST([HDF_CXX]) HDF_CXX=no
AC_SUBST([CXX]) HDF_CXX=no
AC_SUBST([HDF5_HL]) HDF5_HL=yes
-AC_SUBST([LARGEFILE]) LARGEFILE=yes
AC_SUBST([INSTRUMENT])
AC_SUBST([CODESTACK]) CODESTACK=no
AC_SUBST([HAVE_DMALLOC]) HAVE_DMALLOC=no
@@ -783,16 +781,14 @@ fi
## a parallel library even if configure wasn't
## able to find some header file or library that
## might be required. This is defined if the
-## compiler looks like a parallel compiler (e.g.,
-## mpicc or mpcc) or if the user explicitly states
+## user explicitly states
## that a parallel library is being built by supplying
## the `--enable-parallel' configure switch.
##
## PARALLEL -- This variable is set to a non-null value if
-## configure thinks we're compiling a parallel
-## version of the library.
+## we're building a parallel version of the library.
##
-## RUNSERIAL -- This is a command which will be prepended to
+## RUNSERIAL -- This is a command which will be prepended to
## the executable name to run the executable using
## a single process. For serial versions of the
## library this will normally be empty. For parallel
@@ -818,131 +814,6 @@ AC_SUBST([RUNPARALLEL])
AC_SUBST([TESTPARALLEL])
## ----------------------------------------------------------------------
-## If the compiler is obviously a parallel compiler then we're building
-## a parallel version of hdf5 and should define HAVE_PARALLEL. Furthermore,
-## the name of the compiler might tell us how to run the resulting
-## executable. For `mpicc' the executable should be run with `mpiexec' from
-## the same directory as mpicc if it exists.
-##
-case "$CC_BASENAME" in
- mpicc)
- ## The mpich compiler. Use mpiexec from the same directory if it
- ## exists.
- PARALLEL=mpicc
- AC_MSG_CHECKING([for mpiexec])
-
- ## Find the path where mpicc is located.
- cmd="`echo $CC | cut -f1 -d' '`"
- if (echo $cmd | grep / >/dev/null); then
- path="`echo $cmd | sed 's/\(.*\)\/.*$/\1/'`"
- else
- for path in `echo $PATH | ${TR} ":" " "`; do
- if test -x $path/$cmd; then
- break
- fi
- done
- fi
-
- ## Is there an mpiexec at that path?
- if test -x $path/mpiexec; then
- AC_MSG_RESULT([$path/mpiexec])
- RUNSERIAL="${RUNSERIAL:-none}"
-
- if test -z "$RUNPARALLEL"; then
- RUNPARALLEL="$path/mpiexec -n \$\${NPROCS:=6}"
- fi
- else
- AC_MSG_RESULT([none])
- fi
- ;;
-
- mpcc|mpcc_r)
- ## The IBM compiler
- PARALLEL="$CC_BASENAME"
- ;;
-
- *)
- ## Probably not a parallel compiler, but if `--enable-parallel'
- ## is defined below then we're still building a parallel hdf5.
- ;;
-esac
-
-## ----------------------------------------------------------------------
-## If the Fortran compiler is obviously a parallel compiler then we're
-## building a parallel version of hdf5 and should define HAVE_PARALLEL.
-## Furthermore, the name of the compiler might tell us how to run the
-## resulting executable. For `mpif90' the executable should be run with
-## `mpiexec' from the same directory as mpif90 if it exists.
-##
-
-if test "X$HDF_FORTRAN" = "Xyes" ; then
- ## Change to the Fortran 90 language
- AC_LANG_PUSH(Fortran)
-
- case "$FC" in
- *mpif90*)
- ## The Fortran mpich compiler. Use mpiexec from the same directory
- ## if it exists.
- PARALLEL=mpif90
- AC_MSG_CHECKING([for mpiexec])
-
- ## Find the path where mpif90 is located.
- cmd=`echo $FC |cut -f1 -d' '`
- if (echo $cmd |grep / >/dev/null); then
- path="`echo $cmd |sed 's/\(.*\)\/.*$/\1/'`"
- else
- for path in `echo $PATH | ${TR} ":" " "`; do
- if test -x $path/$cmd; then
- break;
- fi
- done
- fi
-
- ## Is there an mpiexec at that path?
- if test -x $path/mpiexec; then
- AC_MSG_RESULT([$path/mpiexec])
- RUNSERIAL="${RUNSERIAL:-none}"
-
- if test -z "$RUNPARALLEL"; then
- RUNPARALLEL="$path/mpiexec -n \$\${NPROCS:=6}"
- fi
- else
- AC_MSG_RESULT([none])
- fi
- ;;
-
- *mpxlf* | *mpxlf_r* | *mpxlf90* | *mpxlf90_r* | *mpxlf95* | *mpxlf95_r*)
- ## The IBM compiler
- PARALLEL="$FC"
- ;;
-
- *)
- ## Probably not a parallel compiler, but if `--enable-parallel'
- ## is defined below then we're still building a parallel hdf5.
- ;;
- esac
-
- ## Change to the C language
- AC_LANG_POP(Fortran)
-fi
-
-## -----------------------------------------------------------------------------
-## If shared libraries are being used with parallel, disable them, unless the
-## user explicity enables them via the '--enable-shared' option.
-
-if test "X${enable_shared}" = "X" -a "X${enable_parallel}" = "Xyes"; then
- echo ' shared libraries disabled in parallel'
- enable_shared="no"
-elif test "X${enable_shared}" = "Xyes" -a "X${enable_parallel}" = "Xyes"; then
- echo ' shared libraries explicitly enabled by user'
-elif test "X${enable_shared}" = "X" -a "X${PARALLEL}" != "X"; then
- echo ' shared libraries disabled when a parallel compiler is being used'
- enable_shared="no"
-elif test "X${enable_shared}" = "Xyes" -a "X${PARALLEL}" != "X"; then
- echo ' shared libraries explicitly enabled by user'
-fi
-
-## ----------------------------------------------------------------------
## Fortran libraries are not currently supported on Mac. Disable them.
## (this is overridable with --enable-unsupported).
##
@@ -1367,116 +1238,25 @@ if test "X${enable_shared}" = "Xyes"; then
fi
## ----------------------------------------------------------------------
-## Test for Largefile support.
-##
-AC_MSG_CHECKING([if configure should try to set up large file support])
-
-AC_ARG_ENABLE([largefile],
- [AS_HELP_STRING([--disable-largefile],
- [omit support for large files])])
-
-## The linux-lfs option is deprecated, but if it is used to disable
-## largefile support on linux and the largefile option is not specified,
-## then go ahead and disable large-file support.
-case "$host_cpu-$host_vendor-$host_os" in
- *linux*)
- AC_ARG_ENABLE([linux-lfs],
- [AS_HELP_STRING([--disable-linux-lfs],
- [Disable support for large (64-bit)
- files on Linux. This option is
- deprecated in favor of
- --disable-largefile.])])
-
- if test "$enable_linux_lfs" = no; then
- if test "$enable_largefile" != yes; then
- enable_largefile=no
- fi
- fi
- ;;
-esac
-
-## If largefile support is enabled, then set up appropriate compiler options.
-if test "$enable_largefile" != no; then
- AC_MSG_RESULT([yes])
-
- ## Check for needed compiler options. This check is pulled drectly
- ## from autoconf's AC_SYS_LARGEFILE macro, as of Autoconf v2.65.
- AC_CACHE_CHECK([for special C compiler options needed for large files],
- ac_cv_sys_largefile_CC,
- [ac_cv_sys_largefile_CC=no
- if test "$GCC" != yes; then
- ac_save_CC=$CC
- while :; do
- ## IRIX 6.2 and later do not support large files by default,
- ## so use the C compiler's -n32 option if that helps.
- AC_LANG_CONFTEST([AC_LANG_PROGRAM([_AC_SYS_LARGEFILE_TEST_INCLUDES])])
- AC_COMPILE_IFELSE([], [break])
- CC="$CC -n32"
- AC_COMPILE_IFELSE([], [ac_cv_sys_largefile_CC=' -n32'; break])
- break
- done
- CC=$ac_save_CC
- rm -f conftest.$ac_ext
- fi])
- if test "$ac_cv_sys_largefile_CC" != no; then
- CC=$CC$ac_cv_sys_largefile_CC
- fi
-
- ## Use the macro _AC_SYS_LARGEFILE_MACRO_VALUE to test defines
- ## that might need to be set for largefile support to behave
- ## correctly. This macro is defined in acsite.m4 and overrides
- ## the version provided by Autoconf (as of v2.65). The custom
- ## macro additionally adds the appropriate defines to AM_CPPFLAGS
- ## so that later configure checks have them visible.
-
- ## Check for _FILE_OFFSET_BITS
- _AC_SYS_LARGEFILE_MACRO_VALUE([_FILE_OFFSET_BITS], [64],
- [ac_cv_sys_file_offset_bits],
- [Number of bits in a file offset, on hosts where this is settable.],
+## Use the macro _AC_SYS_LARGEFILE_MACRO_VALUE to test defines
+## that might need to be set for largefile support to behave
+## correctly. This macro is defined in acsite.m4 and overrides
+## the version provided by Autoconf (as of v2.65). The custom
+## macro additionally adds the appropriate defines to AM_CPPFLAGS
+## so that later configure checks have them visible.
+
+## Check for _FILE_OFFSET_BITS
+_AC_SYS_LARGEFILE_MACRO_VALUE([_FILE_OFFSET_BITS], [64],
+ [ac_cv_sys_file_offset_bits],
+ [Number of bits in a file offset, on hosts where this is settable.],
+ [_AC_SYS_LARGEFILE_TEST_INCLUDES])
+
+## Check for _LARGE_FILES
+if test "$ac_cv_sys_file_offset_bits" = unknown; then
+ _AC_SYS_LARGEFILE_MACRO_VALUE([_LARGE_FILES], [1],
+ [ac_cv_sys_large_files],
+ [Define for large files, on AIX-style hosts.],
[_AC_SYS_LARGEFILE_TEST_INCLUDES])
-
- ## Check for _LARGE_FILES
- if test "$ac_cv_sys_file_offset_bits" = unknown; then
- _AC_SYS_LARGEFILE_MACRO_VALUE([_LARGE_FILES], [1],
- [ac_cv_sys_large_files],
- [Define for large files, on AIX-style hosts.],
- [_AC_SYS_LARGEFILE_TEST_INCLUDES])
- fi
-
- ## Now actually test to see if we can create large files after we've
- ## checked for any needed defines.
- AC_MSG_CHECKING([if large (64-bit) files are supported on this system.])
- AC_CACHE_VAL([hdf5_cv_have_lfs],
- [AC_TRY_RUN([
- #include <stdio.h>
- #include <unistd.h>
- #include <stdlib.h>
- #include <fcntl.h>
- #define BIG_FILE (off_t)0x80000000UL
- int main(void) {
- int fd;
- if ((fd=open("test.conf", O_RDWR|O_TRUNC|O_CREAT, 0666)) < 0) exit(1);
- if (lseek(fd, BIG_FILE, SEEK_SET)!=BIG_FILE) exit(1);
- if (5!=write(fd, "hello", (size_t)5)) exit(1);
- if (lseek(fd, 2*BIG_FILE, SEEK_SET) != 2*BIG_FILE) exit(1);
- if (5!=write(fd, "hello", (size_t)5)) exit(1);
- if (unlink("test.conf") < 0) exit(1);
- exit(0);
- }
- ],[hdf5_cv_have_lfs=yes],[hdf5_cv_have_lfs=no],)])
-
- if test "X${hdf5_cv_have_lfs}" = "Xyes"; then
- AC_MSG_RESULT([yes])
- LARGEFILE="yes"
- fi
- if test "X${hdf5_cv_have_lfs}" = "Xno"; then
- AC_MSG_RESULT([no])
- LARGEFILE="no"
- fi
-
-else
- LARGEFILE="no"
- AC_MSG_RESULT([no])
fi
## ----------------------------------------------------------------------
@@ -1484,11 +1264,9 @@ fi
##
case "$host_cpu-$host_vendor-$host_os" in
*linux*)
- ## If largefile support is enabled, then make available various
- ## LFS-related routines using the following _LARGEFILE*_SOURCE macros.
- if test "X$LARGEFILE" != "Xno"; then
- AM_CPPFLAGS="-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS"
- fi
+ ## Make available various LFS-related routines using the following
+ ## _LARGEFILE*_SOURCE macros.
+ AM_CPPFLAGS="-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS"
## Add POSIX support on Linux systems, so <features.h> defines
## __USE_POSIX, which is required to get the prototype for fdopen
@@ -2657,10 +2435,7 @@ AC_CACHE_SAVE
## What header files and libraries do we have to look for for parallel
## support? For the most part, search paths are already specified with
-## CPPFLAGS and LDFLAGS or are known to the compiler. If the user says
-## `--disable-parallel' but specifies a known parallel compiler (like mpicc
-## or mpcc) then parallel support is enabled but configure doesn't search
-## for any parallel header files or libraries.
+## CPPFLAGS and LDFLAGS or are known to the compiler.
##
AC_ARG_ENABLE([parallel],
[AS_HELP_STRING([--enable-parallel],
@@ -2683,25 +2458,10 @@ if test "X${ALLOW_UNSUPPORTED}" != "Xyes"; then
fi
fi
-## It's possible to build in parallel by specifying a parallel compiler
-## without using the --enable-parallel flag. This isn't allowed with
-## C++ or threadsafe, either, unless the --enable-unsupported flag
-## has also been specified.
-if test "X${ALLOW_UNSUPPORTED}" != "Xyes"; then
- if test "X${PARALLEL}" != "X" -a "X${enable_cxx}" = "Xyes" ; then
- AC_MSG_ERROR([An MPI compiler is being used; --enable-cxx is not allowed. Use --enable-unsupported to override this error.])
- fi
- if test "X${PARALLEL}" != "X" -a "X${THREADSAFE}" = "Xyes"; then
- AC_MSG_ERROR([An MPI compiler is being used; --enable-threadsafe is not allowed. Use --enable-unsupported to override this error.])
- fi
-fi
-
AC_MSG_CHECKING([for parallel support files])
case "X-$enable_parallel" in
X-|X-no|X-none)
- ## Either we are not compiling for parallel or the header and
- ## library files and locations are known to the compiler (this is
- ## the case for a correct installation of mpicc for instance).
+ ## We are not compiling for parallel.
AC_MSG_RESULT([skipped])
;;
@@ -2711,62 +2471,36 @@ case "X-$enable_parallel" in
AC_MSG_RESULT([provided by compiler])
PARALLEL=yes
- ## Try link a simple MPI program. If fail, try again with -lmpi and
- ## -lmpich.
- AC_TRY_LINK(, [MPI_Init()],,
- [AC_CHECK_LIB([mpi], [MPI_Init],,
- [AC_CHECK_LIB([mpich], [MPI_Init],, [PARALLEL=no])])])
-
- ## Then try link a simple MPI-IO program. If fail, try again with
- ## -lmpio.
- if test "X$PARALLEL" = "Xyes"; then
- AC_TRY_LINK(, [MPI_File_open()],,
- [AC_CHECK_LIB([mpio], [MPI_File_open],, [PARALLEL=no])])
- fi
+ ## Try link a simple MPI program.
+ AC_MSG_CHECKING([whether a simple MPI-IO C program can be linked])
+ AC_LINK_IFELSE([AC_LANG_PROGRAM([[#include <mpi.h>]],
+ [[ MPI_Init(0, (void *)0);
+ MPI_File_open(0, (void *)0, 0, 0, (void *)0);]])],
+ [AC_MSG_RESULT([yes])],
+ [AC_MSG_RESULT([no])
+ AC_MSG_ERROR([unable to link a simple MPI-IO C program])])
if test "X$HDF_FORTRAN" = "Xyes"; then
## Change to the Fortran 90 language
AC_LANG_PUSH(Fortran)
- ## Try link a simple MPI program. If fail, try again with -lmpi.
+ ## Try link a simple MPI program.
+ AC_MSG_CHECKING([whether a simple MPI-IO Fortran program can be linked])
AC_LINK_IFELSE([
program main
include 'mpif.h'
integer:: ierr
call mpi_file_open( ierr )
- end],,
- [AC_CHECK_LIB([mpi], [mpi_file_open],, [PARALLEL=no])])
-
- ## Then try link a simple MPI-IO program. If fail, try again with
- ## -lmpio.
- if test "X$PARALLEL" = "Xyes"; then
- AC_LINK_IFELSE([
- program main
- include 'mpif.h'
- integer:: ierr
- call mpi_file_open( ierr )
- end],,
- [AC_CHECK_LIB([mpio], [mpi_file_open],, [PARALLEL=no])])
- fi
+ end],
+ [AC_MSG_RESULT([yes])],
+ [AC_MSG_RESULT([no])
+ AC_MSG_ERROR([unable to link a simple MPI-IO Fortran program])])
## Change to the C language
AC_LANG_POP(Fortran)
fi
## Set RUNPARALLEL to mpiexec if not set yet.
- ## Check for building on Cray if RUNPARALLEL is not yet set by checking
- ## for 'aprun' command (which is the parallel job launcher, like mpiexec).
- if test "X$PARALLEL" = "Xyes" -a -z "$RUNPARALLEL"; then
- ## Find the path where aprun is located.
- for path in `echo $PATH | ${TR} ":" " "`; do
- if test -x $path/aprun; then
- RUNPARALLEL="aprun -q -n \$\${NPROCS:=6}"
- break;
- fi
- done
- fi
-
- ## Set RUNPARALLEL to mpiexec if not set yet.
if test "X$PARALLEL" = "Xyes" -a -z "$RUNPARALLEL"; then
RUNPARALLEL="mpiexec -n \$\${NPROCS:=6}"
fi
@@ -2796,13 +2530,6 @@ if test -n "$PARALLEL"; then
AC_MSG_CHECKING([prefix for running in parallel])
AC_MSG_RESULT([$RUNPARALLEL])
- ## Check that we can link a simple MPI and MPI-IO application
- AC_MSG_CHECKING([whether a simple MPI-IO program can be linked])
- AC_TRY_LINK(, [MPI_Init(); MPI_File_open();],
- [AC_MSG_RESULT([yes])],
- [AC_MSG_RESULT([no])
- AC_MSG_ERROR([unable to link a simple MPI-IO application])])
-
## There *must* be some way to run in parallel even if it's just the
## word `none'.
if test -z "$RUNPARALLEL"; then
@@ -2810,7 +2537,8 @@ if test -n "$PARALLEL"; then
fi
## If RUNSERIAL or RUNPARALLEL is the word `none' then replace it with
- ## the empty string.
+ ## the empty string. This means that no launch commands were requested,
+ ## so we will not use any launch commands.
if test "X$RUNSERIAL" = "Xnone"; then
RUNSERIAL=""
fi
@@ -2861,7 +2589,6 @@ if test -n "$PARALLEL"; then
X-yes)
AC_CHECK_HEADERS([mpe.h],, [unset MPE])
AC_CHECK_LIB([mpe], [MPE_Init_log],, [unset MPE])
- AC_CHECK_LIB([lmpe], [MPE_Init_mpi_io],, [unset MPE])
;;
*)
case "$withval" in
@@ -2903,12 +2630,8 @@ if test -n "$PARALLEL"; then
AM_LDFLAGS="$AM_LDFLAGS -L$mpe_lib"
AC_CHECK_LIB([mpe], [MPE_Init_log],,
[LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset MPE])
- AC_CHECK_LIB([lmpe], [MPE_Init_mpi_io],,
- [LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset MPE])
-
else
AC_CHECK_LIB([mpe], [MPE_Init_log],, [unset MPE])
- AC_CHECK_LIB([lmpe], [MPE_Init_mpi_io],, [unset MPE])
fi
;;
esac
diff --git a/examples/Makefile.in b/examples/Makefile.in
index 71a9b4c..8209e3f 100644
--- a/examples/Makefile.in
+++ b/examples/Makefile.in
@@ -436,7 +436,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/fortran/Makefile.in b/fortran/Makefile.in
index 4d8abdc..1bc48c0 100644
--- a/fortran/Makefile.in
+++ b/fortran/Makefile.in
@@ -492,7 +492,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/fortran/examples/Makefile.in b/fortran/examples/Makefile.in
index b9b5efb..b6998e6 100644
--- a/fortran/examples/Makefile.in
+++ b/fortran/examples/Makefile.in
@@ -444,7 +444,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/fortran/src/Makefile.in b/fortran/src/Makefile.in
index 1fede4d..02b9fa1 100644
--- a/fortran/src/Makefile.in
+++ b/fortran/src/Makefile.in
@@ -553,7 +553,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/fortran/test/Makefile.in b/fortran/test/Makefile.in
index ca91cf5..2140faa 100644
--- a/fortran/test/Makefile.in
+++ b/fortran/test/Makefile.in
@@ -562,7 +562,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/fortran/testpar/Makefile.in b/fortran/testpar/Makefile.in
index 583b6dc..18d64bf 100644
--- a/fortran/testpar/Makefile.in
+++ b/fortran/testpar/Makefile.in
@@ -488,7 +488,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/Makefile.in b/hl/Makefile.in
index cda0122..bb7e708 100644
--- a/hl/Makefile.in
+++ b/hl/Makefile.in
@@ -492,7 +492,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in
index 3839814..c473865 100644
--- a/hl/c++/Makefile.in
+++ b/hl/c++/Makefile.in
@@ -488,7 +488,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in
index 5712043..a538c23 100644
--- a/hl/c++/examples/Makefile.in
+++ b/hl/c++/examples/Makefile.in
@@ -435,7 +435,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in
index 482d8da..664086f 100644
--- a/hl/c++/src/Makefile.in
+++ b/hl/c++/src/Makefile.in
@@ -494,7 +494,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in
index f6bd246..f5f2b9b 100644
--- a/hl/c++/test/Makefile.in
+++ b/hl/c++/test/Makefile.in
@@ -491,7 +491,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in
index 6bbf493..005ef91 100644
--- a/hl/examples/Makefile.in
+++ b/hl/examples/Makefile.in
@@ -435,7 +435,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in
index 8fe9e35..3578877 100644
--- a/hl/fortran/Makefile.in
+++ b/hl/fortran/Makefile.in
@@ -492,7 +492,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in
index 1051658..ff614a8 100644
--- a/hl/fortran/examples/Makefile.in
+++ b/hl/fortran/examples/Makefile.in
@@ -435,7 +435,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index 97ce320..74feca2 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -509,7 +509,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in
index 4a929a6..ff2ecdc 100644
--- a/hl/fortran/test/Makefile.in
+++ b/hl/fortran/test/Makefile.in
@@ -500,7 +500,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in
index 5f7cb2c..1ad3c1a 100644
--- a/hl/src/Makefile.in
+++ b/hl/src/Makefile.in
@@ -490,7 +490,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in
index a002482..e329566 100644
--- a/hl/test/Makefile.in
+++ b/hl/test/Makefile.in
@@ -527,7 +527,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in
index a34e225..7f60940e 100644
--- a/hl/tools/Makefile.in
+++ b/hl/tools/Makefile.in
@@ -489,7 +489,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in
index 1c9be68..aedefdd 100644
--- a/hl/tools/gif2h5/Makefile.in
+++ b/hl/tools/gif2h5/Makefile.in
@@ -503,7 +503,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/src/H5config.h.in b/src/H5config.h.in
index daf7d0d..cc8a59c 100644
--- a/src/H5config.h.in
+++ b/src/H5config.h.in
@@ -196,24 +196,12 @@
/* Define to 1 if you have the `dmalloc' library (-ldmalloc). */
#undef HAVE_LIBDMALLOC
-/* Define to 1 if you have the `lmpe' library (-llmpe). */
-#undef HAVE_LIBLMPE
-
/* Define to 1 if you have the `m' library (-lm). */
#undef HAVE_LIBM
/* Define to 1 if you have the `mpe' library (-lmpe). */
#undef HAVE_LIBMPE
-/* Define to 1 if you have the `mpi' library (-lmpi). */
-#undef HAVE_LIBMPI
-
-/* Define to 1 if you have the `mpich' library (-lmpich). */
-#undef HAVE_LIBMPICH
-
-/* Define to 1 if you have the `mpio' library (-lmpio). */
-#undef HAVE_LIBMPIO
-
/* Define to 1 if you have the `nsl' library (-lnsl). */
#undef HAVE_LIBNSL
diff --git a/src/H5private.h b/src/H5private.h
index 3f0fccf..b4929e7 100644
--- a/src/H5private.h
+++ b/src/H5private.h
@@ -211,10 +211,9 @@
#define eventa(func_name) h5_mpe_eventa
#define eventb(func_name) h5_mpe_eventb
#define MPE_LOG_VARS \
- static int h5_mpe_eventa = -1; \
- static int h5_mpe_eventb = -1; \
- static char p_event_start[128]; \
- static char p_event_end[128];
+ static int eventa(FUNC) = -1; \
+ static int eventb(FUNC) = -1; \
+ char p_event_start[128];
/* Hardwire the color to "red", since that's what all the routines are using
* now. In the future, if we want to change that color for a given routine,
@@ -223,19 +222,18 @@
* color information down to the BEGIN_MPE_LOG macro (which should have a new
* BEGIN_MPE_LOG_COLOR variant). -QAK
*/
+
#define BEGIN_MPE_LOG \
- if(H5_MPEinit_g) { \
- if(h5_mpe_eventa == -1 && h5_mpe_eventb == -1) { \
- const char *p_color = "red"; \
- \
- h5_mpe_eventa = MPE_Log_get_event_number(); \
- h5_mpe_eventb = MPE_Log_get_event_number(); \
- HDsnprintf(p_event_start, sizeof(p_event_start) - 1, "start_%s", FUNC); \
- HDsnprintf(p_event_end, sizeof(p_event_end) - 1, "end_%s", FUNC); \
- MPE_Describe_state(h5_mpe_eventa, h5_mpe_eventb, (char *)FUNC, (char *)p_color); \
- } \
- MPE_Log_event(h5_mpe_eventa, 0, p_event_start); \
- }
+ if (H5_MPEinit_g){ \
+ sprintf(p_event_start, "start %s", FUNC); \
+ if (eventa(FUNC) == -1 && eventb(FUNC) == -1) { \
+ const char* p_color = "red"; \
+ eventa(FUNC)=MPE_Log_get_event_number(); \
+ eventb(FUNC)=MPE_Log_get_event_number(); \
+ MPE_Describe_state(eventa(FUNC), eventb(FUNC), FUNC, p_color); \
+ } \
+ MPE_Log_event(eventa(FUNC), 0, p_event_start); \
+ }
/*------------------------------------------------------------------------
@@ -245,8 +243,8 @@
* Programmer: Long Wang
*/
#define FINISH_MPE_LOG \
- if(H5_MPEinit_g) { \
- MPE_Log_event(h5_mpe_eventb, 0, p_event_end); \
+ if (H5_MPEinit_g) { \
+ MPE_Log_event(eventb(FUNC), 0, FUNC); \
}
#else /* H5_HAVE_MPE */
@@ -1845,7 +1843,7 @@ static herr_t H5_INTERFACE_INIT_FUNC(void);
/* Local variables for API routines */
#define FUNC_ENTER_API_VARS \
- MPE_LOG_VARS \
+ MPE_LOG_VARS \
H5TRACE_DECL
#define FUNC_ENTER_API_COMMON \
diff --git a/src/Makefile.in b/src/Makefile.in
index f6914ae..a57646c 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -548,7 +548,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/src/libhdf5.settings.in b/src/libhdf5.settings.in
index 0402ffa..f25b850 100644
--- a/src/libhdf5.settings.in
+++ b/src/libhdf5.settings.in
@@ -71,4 +71,3 @@ Clear file buffers before write: @CLEARFILEBUF@
Function Stack Tracing: @CODESTACK@
Strict File Format Checks: @STRICT_FORMAT_CHECKS@
Optimization Instrumentation: @INSTRUMENT@
- Large File Support (LFS): @LARGEFILE@
diff --git a/test/Makefile.in b/test/Makefile.in
index 2235cef..0bee69f 100644
--- a/test/Makefile.in
+++ b/test/Makefile.in
@@ -858,7 +858,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/testpar/Makefile.in b/testpar/Makefile.in
index dc5b6b1..2f4d1cf 100644
--- a/testpar/Makefile.in
+++ b/testpar/Makefile.in
@@ -509,7 +509,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/testpar/t_pflush2.c b/testpar/t_pflush2.c
index a570d4c..7f8a23f 100644
--- a/testpar/t_pflush2.c
+++ b/testpar/t_pflush2.c
@@ -101,13 +101,17 @@ check_file(char* name, hid_t fapl)
if(H5Dclose(dset) < 0) goto error;
if(H5Fclose(file) < 0) goto error;
if(H5Pclose(plist) < 0) goto error;
+ if(H5Sclose(space) < 0) goto error;
return 0;
error:
H5E_BEGIN_TRY {
- H5Fclose(file);
H5Pclose(plist);
+ H5Gclose(groups);
+ H5Dclose(dset);
+ H5Fclose(file);
+ H5Sclose(space);
} H5E_END_TRY;
return 1;
}
@@ -206,6 +210,9 @@ main(int argc, char* argv[])
puts(" Test not compatible with current Virtual File Driver");
}
+ /* close HDF5 library */
+ H5close();
+
MPI_Finalize();
return 0;
diff --git a/tools/Makefile.in b/tools/Makefile.in
index c4bf941..466294c 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -489,7 +489,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in
index 76573a0..6248394 100644
--- a/tools/h5copy/Makefile.in
+++ b/tools/h5copy/Makefile.in
@@ -497,7 +497,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in
index 6a8d2ac..4ec41af 100644
--- a/tools/h5diff/Makefile.in
+++ b/tools/h5diff/Makefile.in
@@ -504,7 +504,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in
index 8cb1661..f5689e6 100644
--- a/tools/h5dump/Makefile.in
+++ b/tools/h5dump/Makefile.in
@@ -503,7 +503,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in
index d3b0185..a611304 100644
--- a/tools/h5import/Makefile.in
+++ b/tools/h5import/Makefile.in
@@ -497,7 +497,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in
index d0c8f16..5aa68c6 100644
--- a/tools/h5jam/Makefile.in
+++ b/tools/h5jam/Makefile.in
@@ -509,7 +509,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in
index 2c4fe10..f3be33e 100644
--- a/tools/h5ls/Makefile.in
+++ b/tools/h5ls/Makefile.in
@@ -489,7 +489,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in
index 50e7341..441df41 100644
--- a/tools/h5repack/Makefile.in
+++ b/tools/h5repack/Makefile.in
@@ -521,7 +521,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in
index 32b6d4c..c78e95b 100644
--- a/tools/h5stat/Makefile.in
+++ b/tools/h5stat/Makefile.in
@@ -499,7 +499,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in
index b2afb07..bfc73ec 100644
--- a/tools/lib/Makefile.in
+++ b/tools/lib/Makefile.in
@@ -486,7 +486,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in
index 1160938..99da78f 100644
--- a/tools/misc/Makefile.in
+++ b/tools/misc/Makefile.in
@@ -524,7 +524,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/perform/Makefile.in b/tools/perform/Makefile.in
index 24aa8be..50930e0 100644
--- a/tools/perform/Makefile.in
+++ b/tools/perform/Makefile.in
@@ -528,7 +528,6 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
INSTRUMENT = @INSTRUMENT@
INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
-LARGEFILE = @LARGEFILE@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
diff --git a/tools/perform/perf.c b/tools/perform/perf.c
index 7d329f0..58db6cc 100644
--- a/tools/perform/perf.c
+++ b/tools/perform/perf.c
@@ -390,7 +390,10 @@ die_jar_jar_die:
free(tmp);
if (opt_correct) free(tmp2);
-
+
+ /* close HDF5 library */
+ H5close();
+
MPI_Finalize();
return(0);