diff options
| -rw-r--r-- | README.txt | 2 | ||||
| -rwxr-xr-x | configure | 22 | ||||
| -rw-r--r-- | configure.in | 2 | ||||
| -rw-r--r-- | release_docs/HISTORY-1_8.txt | 589 | ||||
| -rw-r--r-- | release_docs/RELEASE.txt | 193 | ||||
| -rw-r--r-- | src/H5public.h | 4 | ||||
| -rwxr-xr-x | windows/src/H5pubconf.h | 6 |
7 files changed, 618 insertions, 200 deletions
@@ -1,4 +1,4 @@ -HDF5 version 1.8.2 released on Mon Nov 10 15:43:09 CST 2008 +HDF5 version 1.8.2-snap0 currently under development Please refer to the release_docs/INSTALL file for installation instructions. ------------------------------------------------------------------------------ @@ -1,7 +1,7 @@ #! /bin/sh -# From configure.in Id: configure.in 16023 2008-11-03 22:54:52Z epourmal . +# From configure.in Id: configure.in 16058 2008-11-10 21:45:46Z epourmal . # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.61 for HDF5 1.8.2. +# Generated by GNU Autoconf 2.61 for HDF5 1.8.2-snap0. # # Report bugs to <help@hdfgroup.org>. # @@ -724,8 +724,8 @@ SHELL=${CONFIG_SHELL-/bin/sh} # Identity of this package. PACKAGE_NAME='HDF5' PACKAGE_TARNAME='hdf5' -PACKAGE_VERSION='1.8.2' -PACKAGE_STRING='HDF5 1.8.2' +PACKAGE_VERSION='1.8.2-snap0' +PACKAGE_STRING='HDF5 1.8.2-snap0' PACKAGE_BUGREPORT='help@hdfgroup.org' ac_unique_file="src/H5.c" @@ -1501,7 +1501,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 1.8.2 to adapt to many kinds of systems. +\`configure' configures HDF5 1.8.2-snap0 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1571,7 +1571,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 1.8.2:";; + short | recursive ) echo "Configuration of HDF5 1.8.2-snap0:";; esac cat <<\_ACEOF @@ -1753,7 +1753,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 configure 1.8.2 +HDF5 configure 1.8.2-snap0 generated by GNU Autoconf 2.61 Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, @@ -1767,7 +1767,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 $as_me 1.8.2, which was +It was created by HDF5 $as_me 1.8.2-snap0, which was generated by GNU Autoconf 2.61. Invocation command line was $ $0 $@ @@ -2462,7 +2462,7 @@ fi # Define the identity of the package. PACKAGE='hdf5' - VERSION='1.8.2' + VERSION='1.8.2-snap0' cat >>confdefs.h <<_ACEOF @@ -51834,7 +51834,7 @@ exec 6>&1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 $as_me 1.8.2, which was +This file was extended by HDF5 $as_me 1.8.2-snap0, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -51887,7 +51887,7 @@ Report bugs to <bug-autoconf@gnu.org>." _ACEOF cat >>$CONFIG_STATUS <<_ACEOF ac_cs_version="\\ -HDF5 config.status 1.8.2 +HDF5 config.status 1.8.2-snap0 configured by $0, generated by GNU Autoconf 2.61, with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\" diff --git a/configure.in b/configure.in index 3fbc02c..307ad51 100644 --- a/configure.in +++ b/configure.in @@ -26,7 +26,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5], [1.8.2], [help@hdfgroup.org]) +AC_INIT([HDF5], [1.8.2-snap0], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/H5.c]) AM_CONFIG_HEADER([src/H5config.h]) diff --git a/release_docs/HISTORY-1_8.txt b/release_docs/HISTORY-1_8.txt index 2695802..177a95d 100644 --- a/release_docs/HISTORY-1_8.txt +++ b/release_docs/HISTORY-1_8.txt @@ -3,12 +3,601 @@ HDF5 History This file contains development history of HDF5 1.8 branch +3. Release Information for hdf5-1.8.2 2. Release Information for hdf5-1.8.1 1. Release Information for hdf5-1.8.0 [Search on the string '%%%%' for per-release section breaks.] +%%%%1.8.2%%%% + + +HDF5 version 1.8.2 released on Mon Nov 10 15:43:09 CST 2008 +================================================================================ + +INTRODUCTION +============ + +This document describes the differences between HDF5-1.8.1 and HDF5 1.8.2, +and contains information on the platforms tested and known problems in +HDF5-1.8.2. For more details, see the files HISTORY-1_0-1_8_0_rc3.txt +and HISTORY-1_8.txt in the release_docs/ directory of the HDF5 source. + +Links to the HDF5 1.8.2 source code, documentation, and additional materials +can be found on the HDF5 web page at: + + http://www.hdfgroup.org/products/hdf5/ + +The HDF5 1.8.2 release can be obtained from: + + http://www.hdfgroup.org/HDF5/release/obtain5.html + +User documentation for 1.8.2 can be accessed directly at this location: + + http://www.hdfgroup.org/HDF5/doc/ + +New features in the HDF5-1.8.x release series, including brief general +descriptions of some new and modified APIs, are described in the "What's New +in 1.8.0?" document: + + http://www.hdfgroup.org/HDF5/doc/ADGuide/WhatsNew180.html + +All new and modified APIs are listed in detail in the "HDF5 Software Changes +from Release to Release" document, in the section "Release 1.8.2 (current +release) versus Release 1.8.1": + + http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html + +If you have any questions or comments, please send them to the HDF Help Desk: + + help@hdfgroup.org + + +CONTENTS +======== + +- New Features +- Support for new platforms and languages +- Bug Fixes since HDF5-1.8.1 +- Platforms Tested +- Supported Configuration Features Summary +- Known Problems + + +New Features +============ + + Configuration + ------------- + - Upgraded libtool to version 2.2.6a. (MAM - 2008/10/15). + + Library + ------- + - Added two new public routines: H5Pget_elink_fapl() and + H5Pset_elink_fapl(). (see bug #1247) (VC - 2008/10/13) + - Improved free space tracking in file to be faster. (QAK - 2008/10/06) + - Added 'mounted' field to H5G_info_t struct. (QAK - 2008/07/15) + + Parallel Library + ---------------- + - None + + Tools + ----- + - h5repack: added new options -u and -b to add a userblock to an HDF5 + file during the repack. (PVN - 2008/08/26) + - h5repack: added options -t and -a to call H5Pset_alignment while + creating a repacked file. (PVN - 2008/08/29) + - h5ls: added capability to traverse through external links when the -r + (recursive) flag is given. (NAF - 2008/09/16) + - h5ls: added -E option to enable traversal of external links. + h5ls will not traverse external links without this flag being set. + (NAF - 2008/10/06) + - h5dump: when -b flag is used without a keyword after it, binary + output defaults to NATIVE. MEMORY keyword was deprecated + and replaced by NATIVE keyword. (PVN - 2008/10/30) + - h5diff: returns 1 when file graphs differ by any object. + Error return code was changed to 2 from -1. (PVN - 2008/10/30) + - h5import: TEXTFPE (scientific format) was deprecated. Use TEXTFP + instead (PVN - 2008/10/30) + + + + F90 API + ------ + - Added optional parameter 'mounted' to H5Gget_info_f, + H5Gget_info_by_idx_f, H5Gget_info_by_name_f (MSB - 2008/09/24) + - Added H5Tget_native_type_f (MSB - 2008/09/30) + + + C++ API + ------ + - These member functions were added as wrapper for H5Rdereference to + replace the incorrect IdComponent::dereference(). + void H5Object::dereference(H5Object& obj, void* ref, + H5R_type_t ref_type=H5R_OBJECT) + void H5Object::dereference(H5File& h5file, void* ref, + H5R_type_t ref_type=H5R_OBJECT) + void H5Object::dereference(Attribute& obj, void* ref, + H5R_type_t ref_type=H5R_OBJECT) + + In addition, these constructors were added to create the associated + objects by way of dereference: + DataSet(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) + DataSet(H5File& file, void* ref, H5R_type_t ref_type=H5R_OBJECT) + DataSet(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT) + Group(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) + Group(H5File& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) + Group(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT) + DataType(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) + DataType(H5File& file, void* ref, H5R_type_t ref_type=H5R_OBJECT) + DataType(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT) + (BMR - 2008/10/29) + + +Support for New Platforms, Languages, and Compilers +=================================================== + - Intel 10.1 is supported on Mac OS X 10.5.4. + Note: + When Fortran is enabled, configure automatically + disables the build of shared libraries (i.e., only + static C and C++ HDF5 libraries will be built + along with the static HDF5 Fortran library). + Intel 10.1 C and C++ compilers require + "-no-multibyte-chars" compilation flag due to the known + bug in the compilers. + (EIP - 2008/10/30) + + +Bug Fixes since HDF5-1.8.1 +========================== + + Configuration + ------------- + - Fixed error with 'make check install' failing due to h5dump + needing other tools built first. (MAM - 2008/10/15). + - When using shared szip, it is no longer necessary to specify + the path to the shared szip libraries in LD_LIBRARY_PATH. + (MAM - 2008/10/15). + - The file libhdf5_fortran.settings is not installed since its content + is included in libhdf5.settings now. (AKC - 2008/10/21) + - "make DESTDIR=xxx install" failed to install some tools and files + (e.g., h5cc and fortran modules). Fixed. (AKC - 2008/10/8). + + Library + ------- + - H5Ovisit and H5Ovisit_by_name will now properly terminate when the + callback function returns a positive value on the starting object. + (NAF - 2008/11/03) + - Fixed an error where a null message could be created that was larger + than could be written to the file. (NAF - 2008/10/23) + - Corrected error with family/split/multi VFD not updating driver info + when "latest" version of the file format used. (QAK - 2008/10/14) + - Corrected alignment+threshold errors to work correctly when metadata + aggregation is enabled. (QAK - 2008/10/06) + - Changed H5Fget_obj_count and H5Fget_obj_ids to ignore objects + registered by the library for internal library use. + (NAF - 2008/10/06) + - Fixed potential memory leak during compound conversion. + (NAF - 2008/10/06) + - Changed the return value of H5Fget_obj_count from INT to SSIZE_T. + Also changed the return value of H5Fget_obj_ids from HERR_T to + SSIZE_T and the type of the parameter MAX_OBJS from INT to SIZE_T. + (SLU - 2008/09/26) + - Fixed an issue that could cause data to be improperly overwritten + during compound type conversion. (NAF - 2008/09/19) + - Fixed pointer alignment violations that could occur during vlen + conversion. (NAF - 2008/09/16) + - Fixed problem where library could cause a segmentation fault when + an invalid location ID was given to H5Giterate(). (QAK - 2008/08/19) + - Fixed improper shutdown when objects have reference count > 1. The + library now tracks reference count due to the application separately + from that due to internal library routines. (NAF - 2008/08/19) + - Fixed assertion failure caused by incorrect array datatype version. + (NAF - 2008/08/08) + - Fixed an issue where mount point traversal would fail when using + multiple handles for the child. (NAF - 2008/08/07) + - Fixed an issue where mount points were inaccessible when using + multiple file handles for the parent. The mount table is now in + the shared file structure (the parent pointer is still in the + top structure). (NAF - 2008/08/07) + - Fixed assertion failure caused by incorrect array datatype version. + (NAF - 2008/08/04) + - Fixed issue where a group could have a file mounted on it twice. + (QAK - 2008/07/15) + - When an attribute was opened twice and data was written with + one of the handles, the file didn't have the data. It happened + because each handle had its own object structure, and the empty + one overwrote the data with fill value. This is fixed by making + some attribute information like the data be shared in the + attribute structure. (SLU - 2008/07/07) + - Fixed a Windows-specific issue in the ohdr test which was causing + users in some timezones to get false errors. This a deficiency in + the Windows mktime() function, and has been handled properly. + (SJW - 2008/06/19) + + Parallel Library + ---------------- + - None + + Tools + ----- + - h5dump now checks for uniqueness of committed datatypes. + (NAF - 2008/10/15) + - Fixed unnecessary indentation of committed datatypes in h5dump. + (NAF - 2008/10/15) + - Fixed bugs in h5stat: segmemtation fault when printing groups and + print warning message when traversal of objects is unsuccessful. + (see bug #1253) (VC- 2008/10/13) + - Fixed bug in h5ls that prevented relative group listings (like + "h5ls foo.h5/bar") from working correctly (QAK - 2008/06/03) + - h5dump: when doing binary output (-b), the stdout printing of + attributes was done incorrectly. Removed printing of attributes + when doing binary output. (PVN - 2008/06/05) + + + F90 API + ------ + - h5sselect_elements_f: Added additional operators H5S_SELECT_APPEND + and H5S_SELECT_PREPEND (MSB - 2008/09/30) + - h5sget_select_elem_pointlist: Fixed list of returned points by + rearranging the point list correctly by accounting for C + conventions. (MSB - 2008/09/30) + - h5sget_select_hyper_blocklist_f: Fixed error in transposed dimension + of arrays.(MSB - 2008/9/30) + - h5sget_select_bounds_f: Swapped array bounds to account for C and + Fortran reversed array notation (MSB - 2008/9/30) + - Changed to initializing string to a blank character instead of a + null type in tH5P.f90 to fix compiling error using AIX 5.3.0 + (MSB - 2008/7/29) + - Fixed missing commas in H5test_kind.f90 detected by NAG compiler + (MSB - 2008/7/29) + - Fixed passing and array to a scalar in tH5A_1_8.f90 detected by + NAG compiler (MSB - 2008/7/29) + - Added the ability of the test programs to use the status of + HDF5_NOCLEANUP to determine if the *.h5 files should be removed + or not after the tests are completed (MSB - 2008/10/1) + - In nh5tget_offset_c: (MSB 9/12/2008) + If offset was equal to 0 it returned the error code of -1, + this was changed to return an error code of -1 when the offset + value is < 0. + - Uses intrinsic Fortran function SIZEOF if available when detecting + type of INTEGERs and REALs in H5test_kind.f90 (MSB - 2008/9/3) + - Put the DOUBLE PRECISION interfaces in a separate module and + added a USE statement for the module. The interfaces are + included/excluded depending on the state of FORTRAN_DEFAULT_REAL + is DBLE_F which detects if the default REAL is DOUBLE PRECISION. + This allows the library to be compiled with -r8 Fortran flag + without the user needing to edit the source code. + (MSB - 200/8/27) + - Enable building shared library for fortran by adding the flag -fPIC + to the compile flags for versions of Intel Fortran compiler >=9 + (MSB - 2008/8/26) + + C++ API + ------ + - Fixed a design bug which allowed an Attribute object to create/modify + attributes (bugzilla #1068). The API class hierarchy was revised + to address the problem. Classes AbstractDS and Attribute are moved + out of H5Object. Class Attribute now multiply inherits from + IdComponent and AbstractDs and class DataSet from H5Object and + AbstractDs. In addition, the data member IdComponent::id was + moved into subclasses: Attribute, DataSet, DataSpace, DataType, + H5File, Group, and PropList. (BMR - 2008/05/20) + - IdComponent::dereference was incorrect and replaced as described + in "New Features" section. + (BMR - 2008/10/29) + + +Platforms Tested +================ +The following platforms and compilers have been tested for this release. + + AIX 5.3 xlc 7.0.0.8 + xlf 09.01.0000.0008 + xlC 7.0.0.8 + mpcc_r 7.0.0.8 + mpxlf_r 09.01.0000.0008 + + Cray XT3 (2.0.41) cc (pgcc) 7.1-4 + (red storm) ftn (pgf90) 7.1-4 + CC (pgCC) 7.1-4 + + FreeBSD 6.3-STABLE i386 gcc 3.4.6 [FreeBSD] 20060305 + (duty) g++ 3.4.6 [FreeBSD] 20060305 + gcc 4.2.5 20080702 + g++ 4.2.5 20080702 + gfortran 4.2.5 20080702 + + FreeBSD 6.3-STABLE amd64 gcc 3.4.6 [FreeBSD] 20060305 + (liberty) g++ 3.4.6 [FreeBSD] 20060305 + gcc 4.2.5 20080702 + g++ 4.2.5 20080702 + gfortran 4.2.5 20080702 + + IRIX64 6.5 (64 & n32) MIPSpro cc 7.4.4m + F90 MIPSpro 7.4.4m + C++ MIPSpro cc 7.4.4m + + Linux 2.6.9-42.0.10.ELsmp #1 gcc (GCC) 3.4.6 + SMP i686 i386 G95 (GCC 4.0.3 (g95 0.92!) April 18 2007) + (kagiso) PGI C, Fortran, C++ 7.2-1 32-bit + Intel(R) C Compiler for 32-bit + applications, Version 10.1 + Intel(R) C++ Compiler for 32-bit + applications, Version 10.1 + Intel(R) Fortran Compiler for 32-bit + applications, Version 10.1 + Absoft 32-bit Fortran 95 10.0.4 + MPICH mpich-1.2.7 compiled with + gcc 3.4.6 and G95 (GCC 4.0.3 (g95 0.92!) + MPICH mpich2-1.0.6p1 compiled with + gcc 3.4.6 and G95 (GCC 4.0.3 (g95 0.92!) + + Linux 2.6.16.46-0.14-smp #1 Intel(R) C++ for Intel(R) EM64T + SMP x86_64 GNU/Linux Ver. 10.1.013 + (smirom) Intel(R) Fortran Intel(R) EM64T + Ver. 10.1.013 + PGI C, Fortran, C++ Version 7.2-1 + for 64-bit target on x86-64 + MPICH mpich-1.2.7 compiled with + gcc 4.1.2 and G95 (GCC 4.0.3 (g95 0.92!) + MPICH mpich2-1.0.7 compiled with + gcc 4.1.2 and G95 (GCC 4.0.3 (g95 0.92!) + tested for both 32- and 64-bit binaries + + Linux 2.6.16.54-0.2.5 #1 Intel(R) C++ Version 10.1.017 + Altix SMP ia64 Intel(R) Fortran Itanium(R) Version 10.1.017 + (cobalt) SGI MPI 1.16 + + SunOS 5.10 32- and 64-bit Sun WorkShop 6 update 2 C 5.8 + (linew) Sun WorkShop 6 update 2 Fortran 95 8.2 + Sun WorkShop 6 update 2 C++ 5.8 + Patch 121019-06 + + Xeon Linux 2.6.9-42.0.10.EL_lustre-1.4.10.1smp + (abe) Intel(R) C++ Version 10.0.026 + Intel(R) Fortran Compiler Version 10.0.026 + Open MPI 1.2.2 + MVAPICH2-0.9.8p28p2patched-intel-ofed-1.2 + compiled with icc v10.0.026 and + ifort 10.0.026 + + IA-64 Linux 2.4.21-309.tg1 #1 SMP + ia64 gcc (GCC) 3.2.2 + (NCSA tg-login) Intel(R) C++ Version 8.1.037 + Intel(R) Fortran Compiler Version 8.1.033 + mpich-gm-1.2.7p1..16-intel-8.1.037-r1 + + Intel 64 Linux 2.6.9-42.0.10.EL_lustre-1.4.10.1smp + (abe) gcc 3.4.6 20060404 + Intel(R) C++ Version 10.0 + Intel (R) Fortran Compiler Version 10.0 + mvapich2-0.9.8p2patched-intel-ofed-1.2 + + Windows XP Visual Studio .NET + Visual Studio 2005 w/ Intel Fortran 9.1 + Cygwin(native gcc compiler and g95) + + Windows XP x64 Visual Studio 2005 w/ Intel Fortran 9.1 + + Windows Vista Visual Studio 2005 + + MAC OS 10.5.4 (Intel) i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 + GNU Fortran (GCC) 4.3.0 20070810 + G95 (GCC 4.0.3 (g95 0.91!) Apr 24 2008) + Intel C, C++ and Fortran compilers 10.1 + + +Supported Configuration Features Summary +======================================== + + In the tables below + y = tested and supported + n = not supported or not tested in this release + x = not working in this release + dna = does not apply + ( ) = footnote appears below second table + <blank> = testing incomplete on this feature or platform + +Platform C F90 F90 C++ zlib SZIP + parallel parallel +Solaris2.10 32-bit n y n y y y +Solaris2.10 64-bit n y n y y y +IRIX64_6.5 32-bit n n n n y y +IRIX64_6.5 64-bit n y y y y y +Windows XP n y(15) n(15) y y y +Windows XP x64 n y(15) n(15) y y y +Windows Vista n n n y y y +Mac OS X 10.5 Intel n y n y y y +AIX 5.3 32- and 64-bit n y n y y n +FreeBSD 6.3-STABLE +32&64 bit n y n y y y +RedHat EL4 (3) W y(1) y(10) y(1) y y y +RedHat EL4 Intel (3) W n y n y y n +RedHat EL4 PGI (3) W n y n y y n +SuSe x86_64 gcc(3,12) W y(2) y(11) y(2) y y y +SuSe x86_64 Int(3,12) W n y(13) n y y n +SuSe x86_64 PGI(3,12) W n y(8) n y y y +Linux 2.6 SuSE ia64 C + Intel (3,7) y y y y y n +Linux 2.6 SGI Altix + ia64 Intel (3) y y y y y y +Linux 2.6 RHEL C + Lustre Intel (5) y(4) y y(4) y y n +Cray XT3 2.0.41 y y y y y n + + +Platform Shared Shared Shared Thread- + C libs F90 libs C++ libs safe +Solaris2.10 32-bit y y y y +Solaris2.10 64-bit y y y y +IRIX64_6.5 32-bit y dna y y +IRIX64_6.5 64-bit y y n y +Windows XP y y(15) y y +Windows XP x64 y y(15) y y +Windows Vista y n n y +Mac OS X 10.5 y n y n +AIX 5.3 32- and 64-bit n n n n +FreeBSD 6.2 32&64 bit y n y y +RedHat EL4 (3) W y y(10) y y +RedHat EL4 Intel (3) W y y y n +RedHat EL4 PGI (3) W y y y n +SuSe x86_64 GNU(3,12) W y y y y +SuSe x86_64 Int(3,12) W y y y n +SuSe x86_64 PGI(3,12) W y y y n +Linux 2.4 SuSE C + ia64 C Intel (7) y y y n +Linux 2.4 SGI Altix C + ia64 Intel y n +Linux 2.6 RHEL C + Lustre Intel (5) y y y n +Cray XT3 2.0.41 n n n n + + Notes: (1) Using mpich2 1.0.6. + (2) Using mpich2 1.0.7. + (3) Linux 2.6 with GNU, Intel, and PGI compilers, as indicated. + W or C indicates workstation or cluster, respectively. + (4) Using mvapich2 0.9.8. + (5) Linux 2.6.9-42.0.10. Xeon cluster with ELsmp_perfctr_lustre + and Intel compilers + (6) Linux 2.4.21-32.0.1. Xeon cluster with ELsmp_perfctr_lustre + and Intel compilers + (7) Linux 2.4.21, SuSE_292.till. Ia64 cluster with Intel compilers + (8) pgf90 + (9) With Compaq Visual Fortran 6.6c compiler. + (10) With PGI and Absoft compilers. + (11) PGI and Intel compilers for both C and Fortran + (12) AMD Opteron x86_64 + (13) ifort + (14) Yes with C and Fortran, but not with C++ + (15) Using Visual Studio 2005 or Cygwin + (16) Not tested for this release. + Compiler versions for each platform are listed in the preceding + "Platforms Tested" table. + + +Known Problems +============== +* For Red Storm, a Cray XT3 system, the tools/h5ls/testh5ls.sh and + tools/h5copy/testh5copy.sh will fail some of its sub-tests. These sub-tests + are expected to fail and should exit with a non-zero code but the yod + command does not propagate the exit code of the executables. Yod always + returns 0 if it can launch the executable. The test suite shell expects + a non-zero for this particular test, therefore it concludes the test has + failed when it receives 0 from yod. Skip all the "failing" test for now + by changing them as following. + + ======== Original tools/h5ls/testh5ls.sh ========= + TOOLTEST tgroup-1.ls 1 -w80 -r -g tgroup.h5 + ======== Change to =============================== + echo SKIP TOOLTEST tgroup-1.ls 1 -w80 -r -g tgroup.h5 + ================================================== + + ======== Original tools/h5copy/testh5copy.sh ========= + TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d grp_rename + TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d /grp_rename/grp_dsets + TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets -d /E/F/grp_dsets + TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -vp -s /grp_nested -d /G/H/grp_nested + H5LSTEST $FILEOUT + ======== Change to =============================== + echo SKIP TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d grp_rename + echo SKIP TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d /grp_rename/grp_dsets + echo SKIP TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets -d /E/F/grp_dsets + echo SKIP TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -vp -s /grp_nested -d /G/H/grp_nested + echo SKIP H5LSTEST $FILEOUT + ================================================== + AKC - 2008/11/10 + +* For Red Storm, a Cray XT3 system, the yod command sometimes gives the + message, "yod allocation delayed for node recovery". This interferes with + test suites that do not expect seeing this message. See the section of "Red + Storm" in file INSTALL_parallel for a way to deal with this problem. + AKC - 2008/05/28 + +* We have discovered two problems when running collective IO parallel HDF5 + tests with chunking storage on the ChaMPIon MPI compiler on tungsten, a + Linux cluster at NCSA. + + Under some complex selection cases: + 1) MPI_Get_element returns the wrong value. + 2) MPI_Type_struct also generates the wrong derived datatype and corrupt + data may be generated. + These issues arise only when turning on collective IO with chunking storage + with some complex selections. We have not found these problems on other + MPI-IO compilers. If you encounter these problems, you may use independent + IO instead. + + To avoid this behavior, change the following line in your code + H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE); + to + H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_INDEPENDENT); + + KY - 2007/08/24 + +* On Intel 64 Linux cluster (RH 4, Linux 2.6.9) with Intel 10.0 compilers, + use -mp -O1 compilation flags to build the libraries. A higher level of + optimization causes failures in several HDF5 library tests. + +* For LLNL, uP: both serial and parallel tests pass. + Zeus: Serial tests pass but parallel tests fail with a known problem in MPI. + ubgl: Serial tests pass but parallel tests fail. + +* On mpich 1.2.5 and 1.2.6, if more than two processes contribute no IO and + the application asks to do collective IO, we have found that when using 4 + processors, a simple collective write will sometimes be hung. This can be + verified with t_mpi test under testpar. + +* On IRIX6.5, when the C compiler version is greater than 7.4, complicated + MPI derived datatype code will work. However, the user should increase + the value of the MPI_TYPE_MAX environment variable to some appropriate value + to use collective irregular selection code. For example, the current + parallel HDF5 test needs to raise MPI_TYPE_MAX to 200,000 to pass the test. + +* A dataset created or rewritten with a v1.6.3 library or after cannot be read + with the v1.6.2 library or before when the Fletcher32 EDC filter is enabled. + There was a bug in the calculation of the Fletcher32 checksum in the + library before v1.6.3; the checksum value was not consistent between big- + endian and little-endian systems. This bug was fixed in Release 1.6.3. + However, after fixing the bug, the checksum value was no longer the same as + before on little-endian system. Library releases after 1.6.4 can still read + datasets created or rewritten with an HDF5 library of v1.6.2 or before. + SLU - 2005/6/30 + +* On IBM AIX systems, parallel HDF5 mode will fail some tests with error + messages like "INFO: 0031-XXX ...". This is from the command `poe'. + Set the environment variable MP_INFOLEVEL to 0 to minimize the messages + and run the tests again. + + The tests may fail with messages like "The socket name is already in use", + but HDF5 does not use sockets. This failure is due to problems with the + poe command trying to set up the debug socket. To resolve this problem, + check to see whether there are many old /tmp/s.pedb.* files staying around. + These are sockets used by the poe command and left behind due to failed + commands. First, ask your system administrator to clean them out. + Lastly, request IBM to provide a means to run poe without the debug socket. + +* The --enable-static-exec configure flag fails to compile for Solaris + platforms. This is due to the fact that not all of the system libraries on + Solaris are available in a static format. + + The --enable-static-exec configure flag also fails to correctly compile + on IBM SP2 platforms for serial mode. The parallel mode works fine with + this option. + + It is suggested that you do not use this option on these platforms + during configuration. + +* There is also a configure error on Altix machines that incorrectly reports + when a version of Szip without an encoder is being used. + +* Information about building with PGI and Intel compilers is available in + the INSTALL file sections 4.7 and 4.8. + + + + %%%%1.8.1%%%% diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index e09d437..73018f7 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -1,12 +1,13 @@ -HDF5 version 1.8.2 released on Mon Nov 10 15:43:09 CST 2008 +HDF5 version 1.8.2-snap0 currently under development ================================================================================ INTRODUCTION ============ -This document describes the differences between HDF5-1.8.1 and HDF5 1.8.2, -and contains information on the platforms tested and known problems in -HDF5-1.8.2. For more details, see the files HISTORY-1_0-1_8_0_rc3.txt +This document describes the differences between HDF5-1.8.2 and +HDF5 1.8.2-snap*, and contains information on the platforms tested and +known problems in HDF5-1.8.2-snap*. +For more details, see the files HISTORY-1_0-1_8_0_rc3.txt and HISTORY-1_8.txt in the release_docs/ directory of the HDF5 source. Links to the HDF5 1.8.2 source code, documentation, and additional materials @@ -44,7 +45,7 @@ CONTENTS - New Features - Support for new platforms and languages -- Bug Fixes since HDF5-1.8.1 +- Bug Fixes since HDF5-1.8.2 - Platforms Tested - Supported Configuration Features Summary - Known Problems @@ -55,224 +56,52 @@ New Features Configuration ------------- - - Upgraded libtool to version 2.2.6a. (MAM - 2008/10/15). + - Add description here. Do not exceed 80 characters per line. + EIP - 2008/11/12 Library ------- - - Added two new public routines: H5Pget_elink_fapl() and - H5Pset_elink_fapl(). (see bug #1247) (VC - 2008/10/13) - - Improved free space tracking in file to be faster. (QAK - 2008/10/06) - - Added 'mounted' field to H5G_info_t struct. (QAK - 2008/07/15) Parallel Library ---------------- - - None Tools ----- - - h5repack: added new options -u and -b to add a userblock to an HDF5 - file during the repack. (PVN - 2008/08/26) - - h5repack: added options -t and -a to call H5Pset_alignment while - creating a repacked file. (PVN - 2008/08/29) - - h5ls: added capability to traverse through external links when the -r - (recursive) flag is given. (NAF - 2008/09/16) - - h5ls: added -E option to enable traversal of external links. - h5ls will not traverse external links without this flag being set. - (NAF - 2008/10/06) - - h5dump: when -b flag is used without a keyword after it, binary - output defaults to NATIVE. MEMORY keyword was deprecated - and replaced by NATIVE keyword. (PVN - 2008/10/30) - - h5diff: returns 1 when file graphs differ by any object. - Error return code was changed to 2 from -1. (PVN - 2008/10/30) - - h5import: TEXTFPE (scientific format) was deprecated. Use TEXTFP - instead (PVN - 2008/10/30) - F90 API ------ - - Added optional parameter 'mounted' to H5Gget_info_f, - H5Gget_info_by_idx_f, H5Gget_info_by_name_f (MSB - 2008/09/24) - - Added H5Tget_native_type_f (MSB - 2008/09/30) C++ API ------ - - These member functions were added as wrapper for H5Rdereference to - replace the incorrect IdComponent::dereference(). - void H5Object::dereference(H5Object& obj, void* ref, - H5R_type_t ref_type=H5R_OBJECT) - void H5Object::dereference(H5File& h5file, void* ref, - H5R_type_t ref_type=H5R_OBJECT) - void H5Object::dereference(Attribute& obj, void* ref, - H5R_type_t ref_type=H5R_OBJECT) - - In addition, these constructors were added to create the associated - objects by way of dereference: - DataSet(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) - DataSet(H5File& file, void* ref, H5R_type_t ref_type=H5R_OBJECT) - DataSet(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT) - Group(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) - Group(H5File& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) - Group(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT) - DataType(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) - DataType(H5File& file, void* ref, H5R_type_t ref_type=H5R_OBJECT) - DataType(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT) - (BMR - 2008/10/29) Support for New Platforms, Languages, and Compilers =================================================== - - Intel 10.1 is supported on Mac OS X 10.5.4. - Note: - When Fortran is enabled, configure automatically - disables the build of shared libraries (i.e., only - static C and C++ HDF5 libraries will be built - along with the static HDF5 Fortran library). - Intel 10.1 C and C++ compilers require - "-no-multibyte-chars" compilation flag due to the known - bug in the compilers. - (EIP - 2008/10/30) - - -Bug Fixes since HDF5-1.8.1 + + +Bug Fixes since HDF5-1.8.2 ========================== Configuration ------------- - - Fixed error with 'make check install' failing due to h5dump - needing other tools built first. (MAM - 2008/10/15). - - When using shared szip, it is no longer necessary to specify - the path to the shared szip libraries in LD_LIBRARY_PATH. - (MAM - 2008/10/15). - - The file libhdf5_fortran.settings is not installed since its content - is included in libhdf5.settings now. (AKC - 2008/10/21) - - "make DESTDIR=xxx install" failed to install some tools and files - (e.g., h5cc and fortran modules). Fixed. (AKC - 2008/10/8). Library ------- - - H5Ovisit and H5Ovisit_by_name will now properly terminate when the - callback function returns a positive value on the starting object. - (NAF - 2008/11/03) - - Fixed an error where a null message could be created that was larger - than could be written to the file. (NAF - 2008/10/23) - - Corrected error with family/split/multi VFD not updating driver info - when "latest" version of the file format used. (QAK - 2008/10/14) - - Corrected alignment+threshold errors to work correctly when metadata - aggregation is enabled. (QAK - 2008/10/06) - - Changed H5Fget_obj_count and H5Fget_obj_ids to ignore objects - registered by the library for internal library use. - (NAF - 2008/10/06) - - Fixed potential memory leak during compound conversion. - (NAF - 2008/10/06) - - Changed the return value of H5Fget_obj_count from INT to SSIZE_T. - Also changed the return value of H5Fget_obj_ids from HERR_T to - SSIZE_T and the type of the parameter MAX_OBJS from INT to SIZE_T. - (SLU - 2008/09/26) - - Fixed an issue that could cause data to be improperly overwritten - during compound type conversion. (NAF - 2008/09/19) - - Fixed pointer alignment violations that could occur during vlen - conversion. (NAF - 2008/09/16) - - Fixed problem where library could cause a segmentation fault when - an invalid location ID was given to H5Giterate(). (QAK - 2008/08/19) - - Fixed improper shutdown when objects have reference count > 1. The - library now tracks reference count due to the application separately - from that due to internal library routines. (NAF - 2008/08/19) - - Fixed assertion failure caused by incorrect array datatype version. - (NAF - 2008/08/08) - - Fixed an issue where mount point traversal would fail when using - multiple handles for the child. (NAF - 2008/08/07) - - Fixed an issue where mount points were inaccessible when using - multiple file handles for the parent. The mount table is now in - the shared file structure (the parent pointer is still in the - top structure). (NAF - 2008/08/07) - - Fixed assertion failure caused by incorrect array datatype version. - (NAF - 2008/08/04) - - Fixed issue where a group could have a file mounted on it twice. - (QAK - 2008/07/15) - - When an attribute was opened twice and data was written with - one of the handles, the file didn't have the data. It happened - because each handle had its own object structure, and the empty - one overwrote the data with fill value. This is fixed by making - some attribute information like the data be shared in the - attribute structure. (SLU - 2008/07/07) - - Fixed a Windows-specific issue in the ohdr test which was causing - users in some timezones to get false errors. This a deficiency in - the Windows mktime() function, and has been handled properly. - (SJW - 2008/06/19) Parallel Library ---------------- - - None Tools ----- - - h5dump now checks for uniqueness of committed datatypes. - (NAF - 2008/10/15) - - Fixed unnecessary indentation of committed datatypes in h5dump. - (NAF - 2008/10/15) - - Fixed bugs in h5stat: segmemtation fault when printing groups and - print warning message when traversal of objects is unsuccessful. - (see bug #1253) (VC- 2008/10/13) - - Fixed bug in h5ls that prevented relative group listings (like - "h5ls foo.h5/bar") from working correctly (QAK - 2008/06/03) - - h5dump: when doing binary output (-b), the stdout printing of - attributes was done incorrectly. Removed printing of attributes - when doing binary output. (PVN - 2008/06/05) F90 API ------ - - h5sselect_elements_f: Added additional operators H5S_SELECT_APPEND - and H5S_SELECT_PREPEND (MSB - 2008/09/30) - - h5sget_select_elem_pointlist: Fixed list of returned points by - rearranging the point list correctly by accounting for C - conventions. (MSB - 2008/09/30) - - h5sget_select_hyper_blocklist_f: Fixed error in transposed dimension - of arrays.(MSB - 2008/9/30) - - h5sget_select_bounds_f: Swapped array bounds to account for C and - Fortran reversed array notation (MSB - 2008/9/30) - - Changed to initializing string to a blank character instead of a - null type in tH5P.f90 to fix compiling error using AIX 5.3.0 - (MSB - 2008/7/29) - - Fixed missing commas in H5test_kind.f90 detected by NAG compiler - (MSB - 2008/7/29) - - Fixed passing and array to a scalar in tH5A_1_8.f90 detected by - NAG compiler (MSB - 2008/7/29) - - Added the ability of the test programs to use the status of - HDF5_NOCLEANUP to determine if the *.h5 files should be removed - or not after the tests are completed (MSB - 2008/10/1) - - In nh5tget_offset_c: (MSB 9/12/2008) - If offset was equal to 0 it returned the error code of -1, - this was changed to return an error code of -1 when the offset - value is < 0. - - Uses intrinsic Fortran function SIZEOF if available when detecting - type of INTEGERs and REALs in H5test_kind.f90 (MSB - 2008/9/3) - - Put the DOUBLE PRECISION interfaces in a separate module and - added a USE statement for the module. The interfaces are - included/excluded depending on the state of FORTRAN_DEFAULT_REAL - is DBLE_F which detects if the default REAL is DOUBLE PRECISION. - This allows the library to be compiled with -r8 Fortran flag - without the user needing to edit the source code. - (MSB - 200/8/27) - - Enable building shared library for fortran by adding the flag -fPIC - to the compile flags for versions of Intel Fortran compiler >=9 - (MSB - 2008/8/26) C++ API ------ - - Fixed a design bug which allowed an Attribute object to create/modify - attributes (bugzilla #1068). The API class hierarchy was revised - to address the problem. Classes AbstractDS and Attribute are moved - out of H5Object. Class Attribute now multiply inherits from - IdComponent and AbstractDs and class DataSet from H5Object and - AbstractDs. In addition, the data member IdComponent::id was - moved into subclasses: Attribute, DataSet, DataSpace, DataType, - H5File, Group, and PropList. (BMR - 2008/05/20) - - IdComponent::dereference was incorrect and replaced as described - in "New Features" section. - (BMR - 2008/10/29) Platforms Tested diff --git a/src/H5public.h b/src/H5public.h index 1faadd6..06ac2ca 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -72,9 +72,9 @@ extern "C" { #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 8 /* For minor interface/format changes */ #define H5_VERS_RELEASE 2 /* For tweaks, bug-fixes, or development */ -#define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */ +#define H5_VERS_SUBRELEASE "snap0" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.8.2" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.8.2-snap0" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) diff --git a/windows/src/H5pubconf.h b/windows/src/H5pubconf.h index 0ac4e40..7bcf96d 100755 --- a/windows/src/H5pubconf.h +++ b/windows/src/H5pubconf.h @@ -472,13 +472,13 @@ #define H5_PACKAGE_NAME "HDF5" /* Define to the full name and version of this package. */ -#define H5_PACKAGE_STRING "HDF5 1.8.2" +#define H5_PACKAGE_STRING "HDF5 1.8.2-snap0" /* Define to the one symbol short name of this package. */ #define H5_PACKAGE_TARNAME "hdf5" /* Define to the version of this package. */ -#define H5_PACKAGE_VERSION "1.8.2" +#define H5_PACKAGE_VERSION "1.8.2-snap0" /* Width for printf() for type `long long' or `__int64', use `ll' */ #define H5_PRINTF_LL_WIDTH "I64" @@ -635,7 +635,7 @@ /* #undef H5_USING_MEMCHECKER */ /* Version number of package */ -#define H5_VERSION "1.8.2" +#define H5_VERSION "1.8.2-snap0" /* Define if vsnprintf() returns the correct value for formatted strings that don't fit into size allowed */ |