diff options
| -rw-r--r-- | MANIFEST | 2 | ||||
| -rw-r--r-- | config/clang-cxxflags | 15 | ||||
| -rw-r--r-- | config/clang-flags | 13 | ||||
| -rw-r--r-- | config/clang-warnings/developer-general | 1 | ||||
| -rw-r--r-- | config/clang-warnings/error-general | 5 | ||||
| -rw-r--r-- | config/cmake/HDFCXXCompilerFlags.cmake | 56 | ||||
| -rw-r--r-- | config/cmake/HDFCompilerFlags.cmake | 26 | ||||
| -rw-r--r-- | config/linux-gnulibc1 | 13 | ||||
| -rw-r--r-- | configure.ac | 2 | ||||
| -rw-r--r-- | src/H5Dchunk.c | 8 | ||||
| -rw-r--r-- | src/H5Dselect.c | 59 | ||||
| -rw-r--r-- | src/H5F.c | 63 | ||||
| -rw-r--r-- | src/H5Fint.c | 4 | ||||
| -rw-r--r-- | src/H5Fprivate.h | 11 | ||||
| -rw-r--r-- | src/H5Fquery.c | 1 | ||||
| -rw-r--r-- | src/H5I.c | 24 | ||||
| -rw-r--r-- | src/H5MF.c | 3 | ||||
| -rw-r--r-- | src/H5PB.c | 2 |
18 files changed, 151 insertions, 157 deletions
@@ -145,6 +145,8 @@ ./config/solaris #warnings files for both autotools and CMake +./config/clang-cxxflags +./config/clang-flags ./config/clang-warnings/developer-general ./config/clang-warnings/error-general ./config/clang-warnings/general diff --git a/config/clang-cxxflags b/config/clang-cxxflags index 9c283cd..a37509f 100644 --- a/config/clang-cxxflags +++ b/config/clang-cxxflags @@ -64,10 +64,11 @@ if test "X-" = "X-$cxx_flags_set"; then else cxx_version="`$CXX $CXXFLAGS $H5_CXXFLAGS -v 2>&1 |\ grep 'Apple LLVM version' | sed 's/.*Apple LLVM version \([-a-z0-9\.]*\).*/\1/'`" - cxx_vendor="Apple LLVM" + if test -n "$cxx_version"; then + cxx_vendor="Apple LLVM" + fi fi if test "X-" != "X-$cxx_version"; then - echo "compiler '$CXX' is $cxx_vendor-$cxx_version" # Get the compiler version numbers cxx_vers_major=`echo $cxx_version | cut -f1 -d.` @@ -131,11 +132,7 @@ if test "X-clang" = "X-$cxx_vendor" -o "X-Apple LLVM" = "X-$cxx_vendor"; then ############## # NDEBUG is handled explicitly by the configure script - if test $cxx_vers_major -le 4; then - PROD_CXXFLAGS= - else - PROD_CXXFLAGS="-fstdarg-opt" - fi + PROD_CXXFLAGS= ######### # Debug # @@ -146,14 +143,14 @@ if test "X-clang" = "X-$cxx_vendor" -o "X-Apple LLVM" = "X-$cxx_vendor"; then if test $cxx_vers_major -le 4; then DEBUG_CXXFLAGS= else - DEBUG_CXXFLAGS="-ftrapv -fno-common -fsanitize=address" + DEBUG_CXXFLAGS="-ftrapv -fno-common" fi ########### # Symbols # ########### - NO_SYMBOLS_CXXFLAGS="-s" + NO_SYMBOLS_CXXFLAGS= SYMBOLS_CXXFLAGS="-g -fno-omit-frame-pointer" ############# diff --git a/config/clang-flags b/config/clang-flags index e7ade49..18ec5f6 100644 --- a/config/clang-flags +++ b/config/clang-flags @@ -64,10 +64,11 @@ if test "X-" = "X-$cc_flags_set"; then else cc_version="`$CC $CFLAGS $H5_CFLAGS -v 2>&1 |\ grep 'Apple LLVM version' | sed 's/.*Apple LLVM version \([-a-z0-9\.]*\).*/\1/'`" - cc_vendor="Apple LLVM" + if test -n "$cc_version"; then + cc_vendor="Apple LLVM" + fi fi if test "X-" != "X-$cc_version"; then - echo "compiler '$CC' is $cc_vendor-$cc_version" # Get the compiler version numbers cc_vers_major=`echo $cc_version | cut -f1 -d.` @@ -131,11 +132,7 @@ if test "X-clang" = "X-$cc_vendor" -o "X-Apple LLVM" = "X-$cc_vendor"; then ############## # NDEBUG is handled explicitly by the configure script - if test $cc_vers_major -le 4; then - PROD_CFLAGS= - else - PROD_CFLAGS="-fstdarg-opt" - fi + PROD_CFLAGS= ######### # Debug # @@ -153,7 +150,7 @@ if test "X-clang" = "X-$cc_vendor" -o "X-Apple LLVM" = "X-$cc_vendor"; then # Symbols # ########### - NO_SYMBOLS_CFLAGS="-s" + NO_SYMBOLS_CFLAGS= SYMBOLS_CFLAGS="-g" ############# diff --git a/config/clang-warnings/developer-general b/config/clang-warnings/developer-general index aa8c32e..74d8404 100644 --- a/config/clang-warnings/developer-general +++ b/config/clang-warnings/developer-general @@ -1,3 +1,4 @@ -Wformat-nonliteral -Wmissing-noreturn +-Wsometimes-uninitialized -Wswitch-enum diff --git a/config/clang-warnings/error-general b/config/clang-warnings/error-general index a9aa516..883dff7 100644 --- a/config/clang-warnings/error-general +++ b/config/clang-warnings/error-general @@ -8,10 +8,11 @@ -Werror=missing-declarations -Werror=packed -Werror=shadow --Werror=sometimes-uninitialized -Werror=switch # -#-Werror=discarded-qualifiers +# NOTE: Following files are not compatible with incompatible-pointer-types as errors +# src/H5Dchunk.c,src/H5Dint.c,src/H5Gint.c,src/H5HFcache.c,src/H5I.c,src/H5T.c +-Wno-error=incompatible-pointer-types-discards-qualifiers # # # NOTE: File Driver files are not compatible with these warnings as errors diff --git a/config/cmake/HDFCXXCompilerFlags.cmake b/config/cmake/HDFCXXCompilerFlags.cmake index 8527327..7bbebbc 100644 --- a/config/cmake/HDFCXXCompilerFlags.cmake +++ b/config/cmake/HDFCXXCompilerFlags.cmake @@ -40,7 +40,7 @@ if (HDF5_DISABLE_COMPILER_WARNINGS) # warning level is given, so remove it. if (MSVC) set (HDF5_WARNINGS_BLOCKED 1) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) + if (CMAKE_CXX_COMPILER_LOADED) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS}") set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} /W0") endif () @@ -51,7 +51,7 @@ if (HDF5_DISABLE_COMPILER_WARNINGS) # Most compilers use -w to suppress warnings. if (NOT HDF5_WARNINGS_BLOCKED) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) + if (CMAKE_CXX_COMPILER_LOADED) set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -w") endif () endif () @@ -65,7 +65,7 @@ endif () # CDash is configured to only allow 3000 warnings, so # break into groups (from the config/gnu-flags file) #----------------------------------------------------------------------------- -if (NOT MSVC) +if (NOT MSVC AND NOT MINGW) if (${CMAKE_SYSTEM_NAME} MATCHES "SunOS") list (APPEND HDF5_CMAKE_CXX_FLAGS "-erroff=%none -DBSD_COMP") else () @@ -194,7 +194,9 @@ if (NOT MSVC) endif () endif () else () + if (NOT MINGW) list (APPEND HDF5_CMAKE_CXX_FLAGS "/EHsc") + endif () endif () #----------------------------------------------------------------------------- @@ -204,21 +206,19 @@ if (HDF5_ENABLE_ALL_WARNINGS) message (STATUS "....All Warnings are enabled") if (MSVC) if (HDF5_ENABLE_DEV_WARNINGS) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) + if (CMAKE_CXX_COMPILER_LOADED) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS}") list (APPEND HDF5_CMAKE_CXX_FLAGS "/Wall /wd4668") endif () else () - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) + if (CMAKE_CXX_COMPILER_LOADED) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS}") list (APPEND HDF5_CMAKE_CXX_FLAGS "/W3") endif () endif () else () - if (CMAKE_COMPILER_IS_GNUCC) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) - list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS0} ${H5_CXXFLAGS1} ${H5_CXXFLAGS2} ${H5_CXXFLAGS3} ${H5_CXXFLAGS4}) - endif () + if (CMAKE_CXX_COMPILER_LOADED) + list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS0} ${H5_CXXFLAGS1} ${H5_CXXFLAGS2} ${H5_CXXFLAGS3} ${H5_CXXFLAGS4}) endif () endif () endif () @@ -229,15 +229,13 @@ endif () if (HDF5_ENABLE_GROUPZERO_WARNINGS) message (STATUS "....Group Zero warnings are enabled") if (MSVC) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) + if (CMAKE_CXX_COMPILER_LOADED) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " HDF5_CMAKE_CXX_FLAGS "${HDF5_CMAKE_CXX_FLAGS}") list (APPEND HDF5_CMAKE_CXX_FLAGS "/W1") endif () else () - if (CMAKE_COMPILER_IS_GNUCC) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) - list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS0}) - endif () + if (CMAKE_CXX_COMPILER_LOADED) + list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS0}) endif () endif () endif () @@ -248,15 +246,13 @@ endif () if (HDF5_ENABLE_GROUPONE_WARNINGS) message (STATUS "....Group One warnings are enabled") if (MSVC) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) + if (CMAKE_CXX_COMPILER_LOADED) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " HDF5_CMAKE_CXX_FLAGS "${HDF5_CMAKE_CXX_FLAGS}") list (APPEND HDF5_CMAKE_CXX_FLAGS "/W2") endif () else () - if (CMAKE_COMPILER_IS_GNUCC) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) - list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS1}) - endif () + if (CMAKE_CXX_COMPILER_LOADED) + list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS1}) endif () endif () endif () @@ -267,15 +263,13 @@ endif () if (HDF5_ENABLE_GROUPTWO_WARNINGS) message (STATUS "....Group Two warnings are enabled") if (MSVC) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) + if (CMAKE_CXX_COMPILER_LOADED) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " HDF5_CMAKE_CXX_FLAGS "${HDF5_CMAKE_CXX_FLAGS}") list (APPEND HDF5_CMAKE_CXX_FLAGS "/W3") endif () else () - if (CMAKE_COMPILER_IS_GNUCC) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) - list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS2}) - endif () + if (CMAKE_CXX_COMPILER_LOADED) + list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS2}) endif () endif () endif () @@ -286,15 +280,13 @@ endif () if (HDF5_ENABLE_GROUPTHREE_WARNINGS) message (STATUS "....Group Three warnings are enabled") if (MSVC) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) + if (CMAKE_CXX_COMPILER_LOADED) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " HDF5_CMAKE_CXX_FLAGS "${HDF5_CMAKE_CXX_FLAGS}") list (APPEND HDF5_CMAKE_CXX_FLAGS "/W4") endif () else () - if (CMAKE_COMPILER_IS_GNUCC) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) - list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS3}) - endif () + if (CMAKE_CXX_COMPILER_LOADED) + list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS3}) endif () endif () endif () @@ -305,10 +297,8 @@ endif () if (HDF5_ENABLE_GROUPFOUR_WARNINGS) message (STATUS "....Group Four warnings are enabled") if (NOT MSVC) - if (CMAKE_COMPILER_IS_GNUCC) - if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED) - list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS4}) - endif () + if (CMAKE_CXX_COMPILER_LOADED) + list (APPEND HDF5_CMAKE_CXX_FLAGS ${H5_CXXFLAGS4}) endif () endif () endif () diff --git a/config/cmake/HDFCompilerFlags.cmake b/config/cmake/HDFCompilerFlags.cmake index cd4ab48..31af2f8 100644 --- a/config/cmake/HDFCompilerFlags.cmake +++ b/config/cmake/HDFCompilerFlags.cmake @@ -68,7 +68,7 @@ endif () # CDash is configured to only allow 3000 warnings, so # break into groups (from the config/gnu-flags file) #----------------------------------------------------------------------------- -if (NOT MSVC) +if (NOT MSVC AND NOT MINGW) if (${CMAKE_SYSTEM_NAME} MATCHES "SunOS") list (APPEND HDF5_CMAKE_C_FLAGS "-erroff=%none -DBSD_COMP") else () @@ -209,9 +209,7 @@ if (HDF5_ENABLE_ALL_WARNINGS) list (APPEND HDF5_CMAKE_C_FLAGS "/W3") endif () else () - if (CMAKE_COMPILER_IS_GNUCC) - list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS0} ${H5_CFLAGS1} ${H5_CFLAGS2} ${H5_CFLAGS3} ${H5_CFLAGS4}) - endif () + list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS0} ${H5_CFLAGS1} ${H5_CFLAGS2} ${H5_CFLAGS3} ${H5_CFLAGS4}) endif () endif () @@ -225,9 +223,7 @@ if (HDF5_ENABLE_GROUPZERO_WARNINGS) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " HDF5_CMAKE_C_FLAGS "${HDF5_CMAKE_C_FLAGS}") list (APPEND HDF5_CMAKE_C_FLAGS "/W1") else () - if (CMAKE_COMPILER_IS_GNUCC) - list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS0}) - endif () + list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS0}) endif () endif () @@ -241,9 +237,7 @@ if (HDF5_ENABLE_GROUPONE_WARNINGS) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " HDF5_CMAKE_C_FLAGS "${HDF5_CMAKE_C_FLAGS}") list (APPEND HDF5_CMAKE_C_FLAGS "/W2") else () - if (CMAKE_COMPILER_IS_GNUCC) - list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS1}) - endif () + list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS1}) endif () endif () @@ -257,9 +251,7 @@ if (HDF5_ENABLE_GROUPTWO_WARNINGS) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " HDF5_CMAKE_C_FLAGS "${HDF5_CMAKE_C_FLAGS}") list (APPEND HDF5_CMAKE_C_FLAGS "/W3") else () - if (CMAKE_COMPILER_IS_GNUCC) - list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS2}) - endif () + list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS2}) endif () endif () @@ -273,9 +265,7 @@ if (HDF5_ENABLE_GROUPTHREE_WARNINGS) string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " HDF5_CMAKE_C_FLAGS "${HDF5_CMAKE_C_FLAGS}") list (APPEND HDF5_CMAKE_C_FLAGS "/W4") else () - if (CMAKE_COMPILER_IS_GNUCC) - list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS3}) - endif () + list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS3}) endif () endif () @@ -286,9 +276,7 @@ option (HDF5_ENABLE_GROUPFOUR_WARNINGS "Enable group four warnings" OFF) if (HDF5_ENABLE_GROUPFOUR_WARNINGS) message (STATUS "....Group Four warnings are enabled") if (NOT MSVC) - if (CMAKE_COMPILER_IS_GNUCC) - list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS4}) - endif () + list (APPEND HDF5_CMAKE_C_FLAGS ${H5_CFLAGS4}) endif () endif () diff --git a/config/linux-gnulibc1 b/config/linux-gnulibc1 index 055b075..a6f81ff 100644 --- a/config/linux-gnulibc1 +++ b/config/linux-gnulibc1 @@ -235,14 +235,8 @@ case $CC in ;; *clang*) - # clang -v will return version number following "clang" on Linux machines, - # but on Macs the version number will follow "Apple LLVM version" - cc_version_info="`$CC $CFLAGS $H5_CFLAGS -v 2>&1 |\ + cc_version_info="`$CC $CFLAGS $H5_CFLAGS --version 2>&1 |\ grep 'clang version' | sed 's/.*clang version \([-a-z0-9\.]*\).*/\1/'`" - else - cc_version_info="`$CC $CFLAGS $H5_CFLAGS -v 2>&1 |\ - grep 'Apple LLVM version' | sed 's/.*Apple LLVM version \([-a-z0-9\.]*\).*/\1/'`" - fi ;; *) @@ -339,6 +333,11 @@ case $CXX in cxx_version_info=`echo $cxx_version_info` ;; + *clang++*) + cxx_version_info="`$CXX $CXXFLAGS $H5_CXXFLAGS --version 2>&1 |\ + grep 'clang version' | sed 's/.*clang version \([-a-z0-9\.]*\).*/\1/'`" + ;; + *) echo "No match to get cxx_version_info for $CXX" ;; diff --git a/configure.ac b/configure.ac index cf1e463..9480033 100644 --- a/configure.ac +++ b/configure.ac @@ -338,8 +338,10 @@ if test "X$CC_BASENAME" = "Xclang"; then # NOTE: No sanity checking done here! if test -n "$CLANG_SANITIZE_LIST"; then H5_CFLAGS="$H5_CFLAGS -fno-omit-frame-pointer" + H5_CXXFLAGS="$H5_CXXFLAGS -fno-omit-frame-pointer" for sanitizer in `echo $CLANG_SANITIZE_LIST`; do H5_CFLAGS="$H5_CFLAGS -fsanitize=${sanitizer}" + H5_CXXFLAGS="$H5_CXXFLAGS -fsanitize=${sanitizer}" done fi fi diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index 90516c6..5fda3c0 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -3351,7 +3351,7 @@ H5D__chunk_flush_entry(const H5D_t *dset, H5D_rdcc_ent_t *ent, hbool_t reset) H5O_storage_chunk_t *sc = &(dset->shared->layout.storage.u.chunk); herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC_TAG(dset->oloc.addr) + FUNC_ENTER_STATIC HDassert(dset); HDassert(dset->shared); @@ -3515,7 +3515,7 @@ done: ((ent->edge_chunk_state & H5D_RDCC_DISABLE_FILTERS) ? NULL : &(dset->shared->dcpl_cache.pline))); - FUNC_LEAVE_NOAPI_TAG(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__chunk_flush_entry() */ @@ -4350,7 +4350,7 @@ H5D__chunk_allocate(const H5D_io_info_t *io_info, hbool_t full_overwrite, hsize_ const H5O_storage_chunk_t *sc = &(layout->storage.u.chunk); herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE_TAG(dset->oloc.addr) + FUNC_ENTER_PACKAGE /* Check args */ HDassert(dset && H5D_CHUNKED == layout->type); @@ -4754,7 +4754,7 @@ done: H5MM_free(chunk_info.addr); #endif - FUNC_LEAVE_NOAPI_TAG(ret_value) + FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__chunk_allocate() */ diff --git a/src/H5Dselect.c b/src/H5Dselect.c index a843d93..c5469c2 100644 --- a/src/H5Dselect.c +++ b/src/H5Dselect.c @@ -113,51 +113,38 @@ H5D__select_io(const H5D_io_info_t *io_info, size_t elmt_size, HDassert(io_info->store); HDassert(io_info->u.rbuf); - /* Get info from API context */ - if(H5CX_get_vec_size(&dxpl_vec_size) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't retrieve I/O vector size") - - /* Allocate the vector I/O arrays */ - if(dxpl_vec_size > H5D_IO_VECTOR_SIZE) - vec_size = dxpl_vec_size; - else - vec_size = H5D_IO_VECTOR_SIZE; - if(NULL == (mem_len = H5FL_SEQ_MALLOC(size_t, vec_size))) - HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate I/O length vector array") - if(NULL == (mem_off = H5FL_SEQ_MALLOC(hsize_t, vec_size))) - HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate I/O offset vector array") - if(NULL == (file_len = H5FL_SEQ_MALLOC(size_t, vec_size))) - HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate I/O length vector array") - if(NULL == (file_off = H5FL_SEQ_MALLOC(hsize_t, vec_size))) - HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate I/O offset vector array") - /* Check for only one element in selection */ if(nelmts == 1) { + hsize_t single_mem_off; /* Offset in memory */ + hsize_t single_file_off; /* Offset in the file */ + size_t single_mem_len; /* Length in memory */ + size_t single_file_len; /* Length in the file */ + /* Get offset of first element in selections */ - if(H5S_SELECT_OFFSET(file_space, file_off) < 0) + if(H5S_SELECT_OFFSET(file_space, &single_file_off) < 0) HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, FAIL, "can't retrieve file selection offset") - if(H5S_SELECT_OFFSET(mem_space, mem_off) < 0) + if(H5S_SELECT_OFFSET(mem_space, &single_mem_off) < 0) HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, FAIL, "can't retrieve memory selection offset") /* Set up necessary information for I/O operation */ file_nseq = mem_nseq = 1; curr_mem_seq = curr_file_seq = 0; - *file_off *= elmt_size; - *mem_off *= elmt_size; - *file_len = *mem_len = elmt_size; + single_file_off *= elmt_size; + single_mem_off *= elmt_size; + single_file_len = single_mem_len = elmt_size; /* Perform I/O on memory and file sequences */ if(io_info->op_type == H5D_IO_OP_READ) { if((tmp_file_len = (*io_info->layout_ops.readvv)(io_info, - file_nseq, &curr_file_seq, file_len, file_off, - mem_nseq, &curr_mem_seq, mem_len, mem_off)) < 0) + file_nseq, &curr_file_seq, &single_file_len, &single_file_off, + mem_nseq, &curr_mem_seq, &single_mem_len, &single_mem_off)) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_READERROR, FAIL, "read error") } /* end if */ else { HDassert(io_info->op_type == H5D_IO_OP_WRITE); if((tmp_file_len = (*io_info->layout_ops.writevv)(io_info, - file_nseq, &curr_file_seq, file_len, file_off, - mem_nseq, &curr_mem_seq, mem_len, mem_off)) < 0) + file_nseq, &curr_file_seq, &single_file_len, &single_file_off, + mem_nseq, &curr_mem_seq, &single_mem_len, &single_mem_off)) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_WRITEERROR, FAIL, "write error") } /* end else */ @@ -168,6 +155,24 @@ H5D__select_io(const H5D_io_info_t *io_info, size_t elmt_size, size_t mem_nelem; /* Number of elements used in memory sequences */ size_t file_nelem; /* Number of elements used in file sequences */ + /* Get info from API context */ + if(H5CX_get_vec_size(&dxpl_vec_size) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't retrieve I/O vector size") + + /* Allocate the vector I/O arrays */ + if(dxpl_vec_size > H5D_IO_VECTOR_SIZE) + vec_size = dxpl_vec_size; + else + vec_size = H5D_IO_VECTOR_SIZE; + if(NULL == (mem_len = H5FL_SEQ_MALLOC(size_t, vec_size))) + HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate I/O length vector array") + if(NULL == (mem_off = H5FL_SEQ_MALLOC(hsize_t, vec_size))) + HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate I/O offset vector array") + if(NULL == (file_len = H5FL_SEQ_MALLOC(size_t, vec_size))) + HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate I/O length vector array") + if(NULL == (file_off = H5FL_SEQ_MALLOC(hsize_t, vec_size))) + HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate I/O offset vector array") + /* Allocate the iterators */ if(NULL == (mem_iter = H5FL_MALLOC(H5S_sel_iter_t))) HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate memory iterator") @@ -280,7 +280,7 @@ H5Fget_create_plist(hid_t file_id) /* Retrieve the file creation property list */ if(H5VL_file_get(vol_obj, H5VL_FILE_GET_FCPL, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &ret_value) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTCOPY, H5I_INVALID_HID, "unable to retrieve file creation properties") + HGOTO_ERROR(H5E_FILE, H5E_CANTCOPY, H5I_INVALID_HID, "unable to retrieve file creation properties") done: FUNC_LEAVE_API(ret_value) @@ -320,7 +320,7 @@ H5Fget_access_plist(hid_t file_id) /* Retrieve the file's access property list */ if(H5VL_file_get(vol_obj, H5VL_FILE_GET_FAPL, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &ret_value) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, H5I_INVALID_HID, "can't get file access property list") + HGOTO_ERROR(H5E_FILE, H5E_CANTGET, H5I_INVALID_HID, "can't get file access property list") done: FUNC_LEAVE_API(ret_value) @@ -584,8 +584,8 @@ done: * * Purpose: Check if the file can be opened with the given fapl. * - * Return: Succeed: TRUE/FALSE - * Failure: FAIL (includes file does not exist) + * Return: Success: TRUE/FALSE + * Failure: -1 (includes file does not exist) * *------------------------------------------------------------------------- */ @@ -820,8 +820,7 @@ done: * not remove them from the cache. The OBJECT_ID can be a file, * dataset, group, attribute, or named data type. * - * Return: SUCCEED/FAIL - * + * Return: Non-negative on success/Negative on failure *------------------------------------------------------------------------- */ herr_t @@ -863,8 +862,8 @@ done: * closed until those objects are closed; however, all data for * the file and the open objects is flushed. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -879,11 +878,9 @@ H5Fclose(hid_t file_id) if(H5I_FILE != H5I_get_type(file_id)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file ID") - /* Decrement reference count on atom. When it reaches zero the file will - * be closed. - */ + /* Close the file */ if(H5I_dec_app_ref(file_id) < 0) - HGOTO_ERROR(H5E_ATOM, H5E_CANTCLOSEFILE, FAIL, "decrementing file ID failed") + HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "closing file ID failed") done: FUNC_LEAVE_API(ret_value) @@ -1011,8 +1008,7 @@ done: * Purpose: Public API to retrieve the file's 'intent' flags passed * during H5Fopen() * - * Return: SUCCEED/FAIL - * + * Return: Non-negative on success/negative on failure *------------------------------------------------------------------------- */ herr_t @@ -1117,8 +1113,8 @@ done: * is called after an existing file is opened in order * to learn the true size of the underlying file. * - * Return: SUCCEED/FAIL - * + * Return: Success: Non-negative + * Failure: Negative *------------------------------------------------------------------------- */ herr_t @@ -1622,14 +1618,14 @@ done: * set up flush dependency/proxy even for file opened without * SWMR to resolve issues with opened objects. * - * Return: SUCCEED/FAIL + * Return: Non-negative on success/negative on failure * *------------------------------------------------------------------------- */ herr_t H5Fstart_swmr_write(hid_t file_id) { - H5VL_object_t *vol_obj = NULL; /* File info */ + H5VL_object_t *vol_obj = NULL; /* File info */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -1658,8 +1654,7 @@ done: * Purpose: Start metadata cache logging operations for a file. * - Logging must have been set up via the fapl. * - * Return: SUCCEED/FAIL - * + * Return: Non-negative on success/Negative on errors *------------------------------------------------------------------------- */ herr_t @@ -1691,8 +1686,7 @@ done: * - Does not close the log file. * - Logging must have been set up via the fapl. * - * Return: SUCCEED/FAIL - * + * Return: Non-negative on success/Negative on errors *------------------------------------------------------------------------- */ herr_t @@ -1724,8 +1718,7 @@ done: * set up via the fapl. is_currently_logging determines if * log messages are being recorded at this time. * - * Return: SUCCEED/FAIL - * + * Return: Non-negative on success/Negative on errors *------------------------------------------------------------------------- */ herr_t @@ -1759,8 +1752,7 @@ done: * H5Fset_latest_format() starting release 1.10.2. * See explanation for H5Fset_latest_format() in H5Fdeprec.c. * - * Return: SUCCEED/FAIL - * + * Return: Non-negative on success/Negative on failure *------------------------------------------------------------------------- */ herr_t @@ -1796,8 +1788,7 @@ done: * downgrade persistent file space to non-persistent * for 1.8 library. * - * Return: SUCCEED/FAIL - * + * Return: Non-negative on success/Negative on failure *------------------------------------------------------------------------- */ herr_t @@ -1831,8 +1822,7 @@ done: * * Purpose: Resets statistics for the page buffer layer. * - * Return: SUCCEED/FAIL - * + * Return: Non-negative on success/Negative on failure *------------------------------------------------------------------------- */ herr_t @@ -1862,8 +1852,7 @@ done: * * Purpose: Retrieves statistics for the page buffer layer. * - * Return: SUCCEED/FAIL - * + * Return: Non-negative on success/Negative on failure *------------------------------------------------------------------------- */ herr_t @@ -1901,8 +1890,7 @@ done: * image_len: --size of the on disk metadata cache image * --zero if no cache image * - * Return: SUCCEED/FAIL - * + * Return: Non-negative on success/Negative on failure *------------------------------------------------------------------------- */ herr_t @@ -1934,7 +1922,10 @@ done: * allocated memory in the file. * (See H5FDget_eoa() in H5FD.c) * - * Return: SUCCEED/FAIL + * Return: Success: First byte after allocated memory. + * Failure: HADDR_UNDEF + * + * Non-negative on success/Negative on failure *------------------------------------------------------------------------- */ herr_t @@ -1967,7 +1958,7 @@ done: * * Purpose: Set the EOA for the file to the maximum of (EOA, EOF) + increment * - * Return: SUCCEED/FAIL + * Return: Non-negative on success/Negative on errors *------------------------------------------------------------------------- */ herr_t diff --git a/src/H5Fint.c b/src/H5Fint.c index d50baad..0bda894 100644 --- a/src/H5Fint.c +++ b/src/H5Fint.c @@ -1138,7 +1138,7 @@ done: HDONE_ERROR(H5E_FILE, H5E_CANTDEC, NULL, "can't close property list") f->shared = H5FL_FREE(H5F_shared_t, f->shared); - } /* end if */ + } /* Free VOL object */ if(f->vol_obj) @@ -1146,7 +1146,7 @@ done: HDONE_ERROR(H5E_FILE, H5E_CANTDEC, NULL, "unable to free VOL object") f = H5FL_FREE(H5F_t, f); - } /* end if */ + } FUNC_LEAVE_NOAPI(ret_value) } /* end H5F__new() */ diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h index fbb164d..c5d4c89 100644 --- a/src/H5Fprivate.h +++ b/src/H5Fprivate.h @@ -25,15 +25,15 @@ typedef struct H5F_t H5F_t; #include "H5Fpublic.h" /* Public headers needed by this file */ -#include "H5FDpublic.h" /* File drivers */ +#include "H5FDpublic.h" /* File drivers */ /* Private headers needed by this file */ -#include "H5MMprivate.h" /* Memory management */ +#include "H5MMprivate.h" /* Memory management */ #ifdef H5_HAVE_PARALLEL -#include "H5Pprivate.h" /* Property lists */ +#include "H5Pprivate.h" /* Property lists */ #endif /* H5_HAVE_PARALLEL */ -#include "H5VMprivate.h" /* Vectors and arrays */ -#include "H5VLprivate.h" /* Virtual Object Layer */ +#include "H5VMprivate.h" /* Vectors and arrays */ +#include "H5VLprivate.h" /* Virtual Object Layer */ /**************************/ @@ -795,7 +795,6 @@ H5_DLL hsize_t H5F_get_alignment(const H5F_t *f); H5_DLL hsize_t H5F_get_threshold(const H5F_t *f); #ifdef H5_HAVE_PARALLEL H5_DLL H5P_coll_md_read_flag_t H5F_coll_md_read(const H5F_t *f); -H5_DLL void H5F_set_coll_md_read(H5F_t *f, H5P_coll_md_read_flag_t flag); #endif /* H5_HAVE_PARALLEL */ H5_DLL hbool_t H5F_use_mdc_logging(const H5F_t *f); H5_DLL hbool_t H5F_start_mdc_log_on_access(const H5F_t *f); diff --git a/src/H5Fquery.c b/src/H5Fquery.c index db01dac..e1b11c8 100644 --- a/src/H5Fquery.c +++ b/src/H5Fquery.c @@ -229,6 +229,7 @@ H5F_get_extpath(const H5F_t *f) FUNC_ENTER_NOAPI_NOINIT_NOERR HDassert(f); + HDassert(f->shared); HDassert(f->shared->extpath); FUNC_LEAVE_NOAPI(f->shared->extpath) @@ -67,6 +67,7 @@ typedef struct { unsigned init_count; /* # of times this type has been initialized*/ uint64_t id_count; /* Current number of IDs held */ uint64_t nextid; /* ID to use for the next atom */ + H5I_id_info_t *last_info; /* Info for most recent ID looked up */ H5SL_t *ids; /* Pointer to skip list that stores IDs */ } H5I_id_type_t; @@ -318,6 +319,7 @@ H5I_register_type(const H5I_class_t *cls) type_ptr->cls = cls; type_ptr->id_count = 0; type_ptr->nextid = cls->reserved; + type_ptr->last_info = NULL; if(NULL == (type_ptr->ids = H5SL_create(H5SL_TYPE_HID, NULL))) HGOTO_ERROR(H5E_ATOM, H5E_CANTCREATE, FAIL, "skip list creation failed") } /* end if */ @@ -807,6 +809,9 @@ H5I_register(H5I_type_t type, const void *object, hbool_t app_ref) /* Sanity check for the 'nextid' getting too large and wrapping around */ HDassert(type_ptr->nextid <= ID_MASK); + /* Set the most recent ID to this object */ + type_ptr->last_info = id_ptr; + /* Set return value */ ret_value = new_id; @@ -878,6 +883,9 @@ H5I_register_using_existing_id(H5I_type_t type, void *object, hbool_t app_ref, h HGOTO_ERROR(H5E_ATOM, H5E_CANTINSERT, FAIL, "can't insert ID node into skip list") type_ptr->id_count++; + /* Set the most recent ID to this object */ + type_ptr->last_info = id_ptr; + done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5I_register_using_existing_id() */ @@ -1236,6 +1244,10 @@ H5I__remove_common(H5I_id_type_t *type_ptr, hid_t id) if(NULL == (curr_id = (H5I_id_info_t *)H5SL_remove(type_ptr->ids, &id))) HGOTO_ERROR(H5E_ATOM, H5E_CANTDELETE, NULL, "can't remove ID node from skip list") + /* Check if this ID was the last one accessed */ + if(type_ptr->last_info == curr_id) + type_ptr->last_info = NULL; + ret_value = (void *)curr_id->obj_ptr; /* (Casting away const OK -QAK) */ curr_id = H5FL_FREE(H5I_id_info_t, curr_id); @@ -2185,8 +2197,16 @@ H5I__find_id(hid_t id) if(!type_ptr || type_ptr->init_count <= 0) HGOTO_DONE(NULL) - /* Locate the ID node for the ID */ - ret_value = (H5I_id_info_t *)H5SL_search(type_ptr->ids, &id); + /* Check for same ID as we have looked up last time */ + if(type_ptr->last_info && type_ptr->last_info->id == id) + ret_value = type_ptr->last_info; + else { + /* Locate the ID node for the ID */ + ret_value = (H5I_id_info_t *)H5SL_search(type_ptr->ids, &id); + + /* Remember this ID */ + type_ptr->last_info = ret_value; + } /* end else */ done: FUNC_LEAVE_NOAPI(ret_value) @@ -1137,10 +1137,11 @@ HDfprintf(stderr, "%s: Entering - alloc_type = %u, addr = %a, size = %Hu\n", FUN /* If it's metadata, check if the space to free intersects with the file's * metadata accumulator */ - if(H5FD_MEM_DRAW != alloc_type) + if(H5FD_MEM_DRAW != alloc_type) { /* Check if the space to free intersects with the file's metadata accumulator */ if(H5F__accum_free(f->shared, alloc_type, addr, size) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "can't check free space intersection w/metadata accumulator") + } /* end if */ /* Check if the free space manager for the file has been initialized */ if(!f->shared->fs_man[fs_type]) { @@ -314,7 +314,7 @@ H5PB_create(H5F_shared_t *f_sh, size_t size, unsigned page_buf_min_meta_perc, un /* Allocate the new page buffering structure */ if(NULL == (page_buf = H5FL_CALLOC(H5PB_t))) - HGOTO_ERROR(H5E_PAGEBUF, H5E_NOSPACE, FAIL, "memory allocation failed") + HGOTO_ERROR(H5E_PAGEBUF, H5E_NOSPACE, FAIL, "memory allocation failed") page_buf->max_size = size; H5_CHECKED_ASSIGN(page_buf->page_size, size_t, f_sh->fs_page_size, hsize_t); |