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-rw-r--r--MANIFEST5
-rw-r--r--bin/batch/knl_ctestP.sl18
-rw-r--r--bin/batch/knl_ctestS.sl17
-rw-r--r--bin/batch/sbatch_ctestP.sl17
-rw-r--r--bin/batch/sbatch_ctestS.sl16
-rw-r--r--bin/batch/sbatch_ctestSP.sl3
-rwxr-xr-xconfig/cmake/scripts/CTestScript.cmake97
-rw-r--r--config/cmake/wait_H5Tinit.cmake11
-rw-r--r--src/CMakeLists.txt45
9 files changed, 170 insertions, 59 deletions
diff --git a/MANIFEST b/MANIFEST
index 82b17a5..95d8b39 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -92,8 +92,12 @@
./bin/timekeeper _DO_NOT_DISTRIBUTE_
./bin/trace
./bin/yodconfigure
+./bin/batch/knl_ctestP.sl
+./bin/batch/knl_ctestS.sl
./bin/batch/knl_ctestSP.sl
./bin/batch/knl_H5detect.sl.in.cmake
+./bin/batch/sbatch_ctestS.sl
+./bin/batch/sbatch_ctestP.sl
./bin/batch/sbatch_ctestSP.sl
./bin/pkgscrpts/h5rmflags _DO_NOT_DISTRIBUTE_
./bin/pkgscrpts/makeHDF5BinaryTarfiles.pl _DO_NOT_DISTRIBUTE_
@@ -3192,6 +3196,7 @@
./config/cmake/UseJavaSymlinks.cmake
./config/cmake/userblockTest.cmake
./config/cmake/vfdTest.cmake
+./config/cmake/wait_H5Tinit.cmake
./config/cmake_ext_mod/ConfigureChecks.cmake
./config/cmake_ext_mod/CTestCustom.cmake
diff --git a/bin/batch/knl_ctestP.sl b/bin/batch/knl_ctestP.sl
new file mode 100644
index 0000000..3a03fe2
--- /dev/null
+++ b/bin/batch/knl_ctestP.sl
@@ -0,0 +1,18 @@
+#!/bin/bash
+
+#SBATCH -p knl -C quad,flat
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd build
+#run parallel tests except t_cache_image test
+CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
+
+echo "Run $CMD. Test output will be in build/ctestP.out"
+$CMD >& ctestP.out
+echo "Done running $CMD"
+
diff --git a/bin/batch/knl_ctestS.sl b/bin/batch/knl_ctestS.sl
new file mode 100644
index 0000000..5b77c5b
--- /dev/null
+++ b/bin/batch/knl_ctestS.sl
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+#SBATCH -p knl -C quad,flat
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd build
+CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
+
+echo "Run $CMD. Test output will be in build/ctestS.out"
+$CMD >& ctestS.out
+echo "Done running $CMD"
+
diff --git a/bin/batch/sbatch_ctestP.sl b/bin/batch/sbatch_ctestP.sl
new file mode 100644
index 0000000..e967dce
--- /dev/null
+++ b/bin/batch/sbatch_ctestP.sl
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+
+cd build
+CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
+
+echo "Run $CMD. Test output will be in build/ctestP.out"
+$CMD >& ctestP.out
+echo "Done running $CMD"
+
diff --git a/bin/batch/sbatch_ctestS.sl b/bin/batch/sbatch_ctestS.sl
new file mode 100644
index 0000000..a103356
--- /dev/null
+++ b/bin/batch/sbatch_ctestS.sl
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+
+cd build
+CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
+
+echo "Run $CMD. Test output will be in build/ctestS.out"
+$CMD >& ctestS.out
+echo "Done running $CMD"
diff --git a/bin/batch/sbatch_ctestSP.sl b/bin/batch/sbatch_ctestSP.sl
index 56da347..5d79d9b 100644
--- a/bin/batch/sbatch_ctestSP.sl
+++ b/bin/batch/sbatch_ctestSP.sl
@@ -1,6 +1,5 @@
#!/bin/bash
-#SBATCH -p knl -C quad,flat
#SBATCH --nodes=1
#SBATCH -t 01:00:00
#SBATCH --mail-type=BEGIN,END,FAIL
@@ -8,8 +7,6 @@
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestS
-module load cmake
-module load craype-hugepages4M
cd build
CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
diff --git a/config/cmake/scripts/CTestScript.cmake b/config/cmake/scripts/CTestScript.cmake
index a3f2229..9534b1e 100755
--- a/config/cmake/scripts/CTestScript.cmake
+++ b/config/cmake/scripts/CTestScript.cmake
@@ -267,41 +267,64 @@ message (STATUS "Dashboard script configuration:\n${vars}\n")
if (NOT LOCAL_BATCH_TEST)
ctest_test (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args} RETURN_VALUE res)
else ()
- execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_NAME})
+ file(STRINGS ${CTEST_BINARY_DIRECTORY}/Testing/TAG TAG_CONTENTS REGEX "^2([0-9]+)[-]([0-9]+)$")
+ execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${CTEST_SOURCE_DIRECTORY}/bin/batch/${LOCAL_BATCH_SCRIPT_NAME})
+ message(STATUS "Check for existence of ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml")
+ execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+ while(result)
+ ctest_sleep(60)
+ execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+ endwhile(result)
+ if (LOCAL_BATCH_SCRIPT_PARALLEL_NAME)
+ if (LOCAL_SUBMIT)
+ ctest_submit (PARTS Test)
+ endif ()
+ message(STATUS "Found ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml for serial tests. Renaming to SerialTest.xml")
+ file (RENAME ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/SerialTest.xml)
+ unset(result CACHE)
+ execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${CTEST_SOURCE_DIRECTORY}/bin/batch/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME})
+ message(STATUS "Check for existence of ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml")
+ execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+ while(result)
+ ctest_sleep(60)
+ execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+ endwhile(result)
+ message(STATUS "Found ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml for parallel tests.")
+ endif()
endif ()
- if (LOCAL_SUBMIT)
- ctest_submit (PARTS Test)
- endif ()
- if (${res} LESS 0 OR ${res} GREATER 0)
- file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed Tests: ${res}\n")
- endif ()
- else ()
- ctest_memcheck (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args})
- if (LOCAL_SUBMIT)
- ctest_submit (PARTS MemCheck)
- endif ()
- endif ()
- if (LOCAL_COVERAGE_TEST)
- ctest_coverage (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND)
- if (LOCAL_SUBMIT)
- ctest_submit (PARTS Coverage)
- endif ()
- endif ()
- endif ()
-
- if (NOT LOCAL_MEMCHECK_TEST AND NOT LOCAL_NO_PACKAGE AND NOT LOCAL_SKIP_BUILD)
- ##-----------------------------------------------
- ## Package the product
- ##-----------------------------------------------
- execute_process (COMMAND cpack -C ${CTEST_CONFIGURATION_TYPE} -V
- WORKING_DIRECTORY ${CTEST_BINARY_DIRECTORY}
- RESULT_VARIABLE cpackResult
- OUTPUT_VARIABLE cpackLog
- ERROR_VARIABLE cpackLog.err
- )
- file (WRITE ${CTEST_BINARY_DIRECTORY}/cpack.log "${cpackLog.err}" "${cpackLog}")
- if (cpackResult GREATER 0)
- file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed packaging: ${cpackResult}:${cpackLog.err} \n")
- endif ()
- endif ()
-#-----------------------------------------------------------------------------
+ if (LOCAL_SUBMIT)
+ ctest_submit (PARTS Test)
+ endif ()
+ if (${res} LESS 0 OR ${res} GREATER 0)
+ file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed Tests: ${res}\n")
+ endif ()
+ else ()
+ ctest_memcheck (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args})
+ if (LOCAL_SUBMIT)
+ ctest_submit (PARTS MemCheck)
+ endif ()
+ endif ()
+ if (LOCAL_COVERAGE_TEST)
+ ctest_coverage (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND)
+ if (LOCAL_SUBMIT)
+ ctest_submit (PARTS Coverage)
+ endif ()
+ endif ()
+ endif ()
+
+ if (NOT LOCAL_MEMCHECK_TEST AND NOT LOCAL_NO_PACKAGE AND NOT LOCAL_SKIP_BUILD)
+ ##-----------------------------------------------
+ ## Package the product
+ ##-----------------------------------------------
+ execute_process (COMMAND cpack -C ${CTEST_CONFIGURATION_TYPE} -V
+ WORKING_DIRECTORY ${CTEST_BINARY_DIRECTORY}
+ RESULT_VARIABLE cpackResult
+ OUTPUT_VARIABLE cpackLog
+ ERROR_VARIABLE cpackLog.err
+ )
+ file (WRITE ${CTEST_BINARY_DIRECTORY}/cpack.log "${cpackLog.err}" "${cpackLog}")
+ if (cpackResult GREATER 0)
+ file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed packaging: ${cpackResult}:${cpackLog.err} \n")
+ endif ()
+ endif ()
+#-----------------------------------------------------------------------------
diff --git a/config/cmake/wait_H5Tinit.cmake b/config/cmake/wait_H5Tinit.cmake
new file mode 100644
index 0000000..c0b4d06
--- /dev/null
+++ b/config/cmake/wait_H5Tinit.cmake
@@ -0,0 +1,11 @@
+cmake_minimum_required (VERSION 3.10)
+
+message(STATUS "Check for existence of ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
+execute_process(COMMAND ls ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c RESULT_VARIABLE H5TI_result OUTPUT_QUIET ERROR_QUIET)
+while(H5TI_result)
+ ctest_sleep(30)
+ message(STATUS "Checking again for existence of ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
+ execute_process(COMMAND ls ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c RESULT_VARIABLE H5TI_result OUTPUT_QUIET ERROR_QUIET)
+endwhile(H5TI_result)
+file (TOUCH "${HDF5_BINARY_DIR}/H5Tinit_created")
+message(STATUS "Found ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 31a38be..bca5a92 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -947,39 +947,46 @@ if (NOT EXISTS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c)
${HDF5_BINARY_DIR}/${HDF5_BATCH_H5DETECT_SCRIPT} ESCAPE_QUOTES @ONLY
)
add_custom_command (
- OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp
+ OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
COMMAND ${HDF5_BATCH_CMD}
ARGS ${HDF5_BINARY_DIR}/${HDF5_BATCH_H5DETECT_SCRIPT}
+ COMMAND ${CMAKE_COMMAND}
+ ARGS -E echo "Executed batch command to create H5Tinit.c"
DEPENDS H5detect
WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR}
)
+ add_custom_target (gen_H5Tinit
+ COMMAND ${CMAKE_COMMAND} -P ${HDF5_SOURCE_DIR}/config/cmake/wait_H5Tinit.cmake
+ )
+ if (BUILD_SHARED_LIBS)
+ add_custom_command (
+ OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c
+ COMMAND ${CMAKE_COMMAND}
+ ARGS -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c" "${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c"
+ DEPENDS gen_H5Tinit ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit_created
+ )
+ set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c PROPERTIES GENERATED TRUE)
+ endif ()
else ()
add_custom_command (
- OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp
+ OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR}$<TARGET_FILE:H5detect>
- ARGS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp
+ ARGS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
DEPENDS H5detect
WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR}
)
+ if (BUILD_SHARED_LIBS)
+ add_custom_command (
+ OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c
+ COMMAND ${CMAKE_COMMAND}
+ ARGS -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c" "${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c"
+ DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
+ )
+ set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c PROPERTIES GENERATED TRUE)
+ endif ()
endif ()
- add_custom_target (gen_H5Tinit ALL DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp)
- add_custom_command (
- OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
- COMMAND ${CMAKE_COMMAND}
- ARGS -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp" "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c"
- DEPENDS gen_H5Tinit ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp
- )
set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c PROPERTIES GENERATED TRUE)
endif ()
-if (BUILD_SHARED_LIBS)
- add_custom_command (
- OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c
- COMMAND ${CMAKE_COMMAND}
- ARGS -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c" "${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c"
- DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
- )
- set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c PROPERTIES GENERATED TRUE)
-endif ()
add_executable (H5make_libsettings ${HDF5_SRC_DIR}/H5make_libsettings.c)
target_include_directories(H5make_libsettings PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
generated by cgit v0.12 at 2024-07-21 18:35:27 (GMT)