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-rw-r--r--MANIFEST81
-rwxr-xr-xbin/trace1
-rwxr-xr-xconfigure13
-rw-r--r--configure.ac139
-rw-r--r--examples/CMakeLists.txt26
-rw-r--r--examples/CMakeTests.cmake12
-rw-r--r--examples/Makefile.am16
-rw-r--r--examples/Makefile.in16
-rw-r--r--examples/h5_vds-eiger.c177
-rw-r--r--examples/h5_vds-exc.c215
-rw-r--r--examples/h5_vds-exclim.c222
-rw-r--r--examples/h5_vds-percival-unlim-maxmin.c309
-rw-r--r--examples/h5_vds-percival-unlim.c352
-rw-r--r--examples/h5_vds-percival.c242
-rw-r--r--examples/h5_vds-simpleIO.c184
-rw-r--r--examples/h5_vds.c267
-rw-r--r--examples/run-c-ex.sh.in18
-rw-r--r--src/CMakeLists.txt1
-rw-r--r--src/H5D.c44
-rw-r--r--src/H5Ddeprec.c46
-rw-r--r--src/H5Dint.c167
-rw-r--r--src/H5Dio.c7
-rw-r--r--src/H5Dlayout.c118
-rw-r--r--src/H5Doh.c11
-rw-r--r--src/H5Dpkg.h18
-rw-r--r--src/H5Dprivate.h18
-rw-r--r--src/H5Dpublic.h10
-rw-r--r--src/H5Dvirtual.c2727
-rw-r--r--src/H5Edefin.h225
-rw-r--r--src/H5Einit.h777
-rw-r--r--src/H5Epubgen.h412
-rw-r--r--src/H5Eterm.h227
-rw-r--r--src/H5Fint.c127
-rw-r--r--src/H5Fprivate.h6
-rw-r--r--src/H5HG.c44
-rw-r--r--src/H5HGprivate.h1
-rw-r--r--src/H5Olayout.c299
-rw-r--r--src/H5Oprivate.h80
-rw-r--r--src/H5Osdspace.c4
-rw-r--r--src/H5Pdapl.c280
-rw-r--r--src/H5Pdcpl.c871
-rw-r--r--src/H5Ppublic.h13
-rw-r--r--src/H5R.c6
-rw-r--r--src/H5S.c115
-rw-r--r--src/H5Sall.c63
-rw-r--r--src/H5Shyper.c1703
-rw-r--r--src/H5Snone.c61
-rw-r--r--src/H5Spkg.h36
-rw-r--r--src/H5Spoint.c56
-rw-r--r--src/H5Sprivate.h39
-rw-r--r--src/H5Spublic.h2
-rw-r--r--src/H5Sselect.c328
-rw-r--r--src/H5err.txt1
-rw-r--r--src/H5public.h1
-rw-r--r--src/H5trace.c34
-rw-r--r--src/Makefile.am2
-rw-r--r--src/Makefile.in37
-rw-r--r--test/CMakeLists.txt1
-rw-r--r--test/CMakeTests.cmake1
-rw-r--r--test/Makefile.am5
-rw-r--r--test/Makefile.in31
-rw-r--r--test/h5test.c145
-rw-r--r--test/h5test.h2
-rw-r--r--test/trefer.c45
-rw-r--r--test/tselect.c436
-rw-r--r--test/vds.c11146
-rw-r--r--tools/h5diff/CMakeTests.cmake132
-rw-r--r--tools/h5diff/testfiles/h5diff_v1.txt18
-rw-r--r--tools/h5diff/testfiles/h5diff_v2.txt7
-rw-r--r--tools/h5diff/testfiles/h5diff_v3.txt4
-rw-r--r--tools/h5diff/testh5diff.sh.in210
-rw-r--r--tools/h5dump/CMakeLists.txt2
-rw-r--r--tools/h5dump/CMakeTestsVDS.cmake238
-rw-r--r--tools/h5dump/Makefile.am2
-rw-r--r--tools/h5dump/Makefile.in11
-rw-r--r--tools/h5dump/errfiles/tdset-2.err13
-rw-r--r--tools/h5dump/errfiles/tperror.err13
-rw-r--r--tools/h5dump/errfiles/tslink-D.err19
-rw-r--r--tools/h5dump/testh5dumpvds.sh.in505
-rw-r--r--tools/h5ls/CMakeLists.txt2
-rw-r--r--tools/h5ls/CMakeTestsVDS.cmake149
-rw-r--r--tools/h5ls/Makefile.am2
-rw-r--r--tools/h5ls/Makefile.in10
-rw-r--r--tools/h5ls/h5ls.c26
-rw-r--r--tools/h5ls/testh5lsvds.sh.in258
-rw-r--r--tools/h5repack/CMakeTests.cmake151
-rw-r--r--tools/h5repack/h5repack.sh.in197
-rw-r--r--tools/h5stat/h5stat.c4
-rw-r--r--tools/h5stat/testfiles/h5stat_dims1.ddl1
-rw-r--r--tools/h5stat/testfiles/h5stat_dims2.ddl1
-rw-r--r--tools/h5stat/testfiles/h5stat_filters-d.ddl1
-rw-r--r--tools/h5stat/testfiles/h5stat_filters-dT.ddl1
-rw-r--r--tools/h5stat/testfiles/h5stat_filters.ddl1
-rw-r--r--tools/h5stat/testfiles/h5stat_links2.ddl1
-rw-r--r--tools/h5stat/testfiles/h5stat_newgrat.ddl1
-rw-r--r--tools/h5stat/testfiles/h5stat_numattrs2.ddl1
-rw-r--r--tools/h5stat/testfiles/h5stat_tsohm.ddl1
-rw-r--r--tools/lib/h5tools.h21
-rw-r--r--tools/lib/h5tools_dump.c369
-rw-r--r--tools/lib/h5tools_str.c132
-rw-r--r--tools/lib/h5tools_str.h5
-rw-r--r--tools/misc/CMakeLists.txt3
-rw-r--r--tools/misc/Makefile.am4
-rw-r--r--tools/misc/Makefile.in187
-rw-r--r--tools/misc/vds/CMakeLists.txt28
-rw-r--r--tools/misc/vds/Makefile.am38
-rw-r--r--tools/misc/vds/Makefile.in1404
-rw-r--r--tools/misc/vds/UC_1.h150
-rw-r--r--tools/misc/vds/UC_1_one_dim_gen.c239
-rw-r--r--tools/misc/vds/UC_2.h151
-rw-r--r--tools/misc/vds/UC_2_two_dims_gen.c230
-rw-r--r--tools/misc/vds/UC_3.h78
-rw-r--r--tools/misc/vds/UC_3_gaps_gen.c255
-rw-r--r--tools/misc/vds/UC_4.h86
-rw-r--r--tools/misc/vds/UC_4_printf_gen.c219
-rw-r--r--tools/misc/vds/UC_5.h83
-rw-r--r--tools/misc/vds/UC_5_stride_gen.c243
-rw-r--r--tools/misc/vds/UC_common.h41
-rw-r--r--tools/testfiles/vds/1_a.h5bin0 -> 4856 bytes
-rw-r--r--tools/testfiles/vds/1_b.h5bin0 -> 4611 bytes
-rw-r--r--tools/testfiles/vds/1_c.h5bin0 -> 4856 bytes
-rw-r--r--tools/testfiles/vds/1_d.h5bin0 -> 4611 bytes
-rw-r--r--tools/testfiles/vds/1_e.h5bin0 -> 4856 bytes
-rw-r--r--tools/testfiles/vds/1_f.h5bin0 -> 4611 bytes
-rw-r--r--tools/testfiles/vds/1_vds.h5bin0 -> 5496 bytes
-rw-r--r--tools/testfiles/vds/2_a.h5bin0 -> 4576 bytes
-rw-r--r--tools/testfiles/vds/2_b.h5bin0 -> 4578 bytes
-rw-r--r--tools/testfiles/vds/2_c.h5bin0 -> 4576 bytes
-rw-r--r--tools/testfiles/vds/2_d.h5bin0 -> 4578 bytes
-rw-r--r--tools/testfiles/vds/2_e.h5bin0 -> 4578 bytes
-rw-r--r--tools/testfiles/vds/2_vds.h5bin0 -> 5496 bytes
-rw-r--r--tools/testfiles/vds/3_1_vds.h5bin0 -> 5496 bytes
-rw-r--r--tools/testfiles/vds/3_2_vds.h5bin0 -> 5496 bytes
-rw-r--r--tools/testfiles/vds/4_0.h5bin0 -> 4581 bytes
-rw-r--r--tools/testfiles/vds/4_1.h5bin0 -> 4581 bytes
-rw-r--r--tools/testfiles/vds/4_2.h5bin0 -> 4581 bytes
-rw-r--r--tools/testfiles/vds/4_vds.h5bin0 -> 5496 bytes
-rw-r--r--tools/testfiles/vds/5_a.h5bin0 -> 4581 bytes
-rw-r--r--tools/testfiles/vds/5_b.h5bin0 -> 4581 bytes
-rw-r--r--tools/testfiles/vds/5_c.h5bin0 -> 4581 bytes
-rw-r--r--tools/testfiles/vds/5_vds.h5bin0 -> 5496 bytes
-rw-r--r--tools/testfiles/vds/tvds-1.ddl100
-rw-r--r--tools/testfiles/vds/tvds-1.ls14
-rw-r--r--tools/testfiles/vds/tvds-2.ddl58
-rw-r--r--tools/testfiles/vds/tvds-2.ls13
-rw-r--r--tools/testfiles/vds/tvds-3_1.ddl135
-rw-r--r--tools/testfiles/vds/tvds-3_1.ls14
-rw-r--r--tools/testfiles/vds/tvds-3_2.ddl166
-rw-r--r--tools/testfiles/vds/tvds-3_2.ls13
-rw-r--r--tools/testfiles/vds/tvds-4.ddl46
-rw-r--r--tools/testfiles/vds/tvds-4.ls9
-rw-r--r--tools/testfiles/vds/tvds-5.ddl46
-rw-r--r--tools/testfiles/vds/tvds-5.ls11
-rw-r--r--tools/testfiles/vds/tvds_layout-1.ddl232
-rw-r--r--tools/testfiles/vds/tvds_layout-2.ddl170
-rw-r--r--tools/testfiles/vds/tvds_layout-3_1.ddl267
-rw-r--r--tools/testfiles/vds/tvds_layout-3_2.ddl278
-rw-r--r--tools/testfiles/vds/tvds_layout-4.ddl78
-rw-r--r--tools/testfiles/vds/tvds_layout-5.ddl118
159 files changed, 29036 insertions, 1799 deletions
diff --git a/MANIFEST b/MANIFEST
index b18c4ee..45eaefc 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1,4 +1,4 @@
-#
+
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
@@ -148,6 +148,14 @@
./examples/h5_ref2reg.c
./examples/h5_shared_mesg.c
./examples/ph5example.c
+./examples/h5_vds.c
+./examples/h5_vds-exc.c
+./examples/h5_vds-exclim.c
+./examples/h5_vds-eiger.c
+./examples/h5_vds-simpleIO.c
+./examples/h5_vds-percival.c
+./examples/h5_vds-percival-unlim.c
+./examples/h5_vds-percival-unlim-maxmin.c
./examples/testh5cc.sh.in
./examples/README
@@ -506,6 +514,7 @@
./src/H5Dscatgath.c
./src/H5Dselect.c
./src/H5Dtest.c
+./src/H5Dvirtual.c
./src/H5E.c
./src/H5Edefin.h
./src/H5Edeprec.c
@@ -988,6 +997,7 @@
./test/test_filters_be.h5
./test/gen_filters.c
./test/chunk_info.c
+./test/vds.c
./test/testfiles/err_compat_1
./test/testfiles/err_compat_2
@@ -1062,9 +1072,9 @@
./tools/h5dump/testh5dump.sh.in
./tools/h5dump/testh5dumppbits.sh.in
./tools/h5dump/testh5dumpxml.sh.in
+./tools/h5dump/testh5dumpvds.sh.in
./tools/h5dump/binread.c
-
./tools/h5import/Makefile.am
./tools/h5import/Makefile.in
./tools/h5import/h5import.h
@@ -1153,10 +1163,12 @@
./tools/h5repack/testh5repack_detect_szip.c
# h5ls sources
+./tools/h5ls/CMakeTestsVDS.cmake
./tools/h5ls/Makefile.am
./tools/h5ls/Makefile.in
./tools/h5ls/h5ls.c
./tools/h5ls/testh5ls.sh.in
+./tools/h5ls/testh5lsvds.sh.in
# h5copy sources
./tools/h5copy/testh5copy.sh.in
@@ -1208,6 +1220,20 @@
./tools/misc/testfiles/h5mkgrp_help.txt
./tools/misc/testfiles/h5mkgrp_version.txt.in
./tools/misc/h5perf_gentest.c
+./tools/misc/vds/Makefile.am
+./tools/misc/vds/Makefile.in
+./tools/misc/vds/UC_1.h
+./tools/misc/vds/UC_1_one_dim_gen.c
+./tools/misc/vds/UC_2.h
+./tools/misc/vds/UC_2_two_dims_gen.c
+./tools/misc/vds/UC_3.h
+./tools/misc/vds/UC_3_gaps_gen.c
+./tools/misc/vds/UC_4.h
+./tools/misc/vds/UC_4_printf_gen.c
+./tools/misc/vds/UC_5.h
+./tools/misc/vds/UC_5_stride_gen.c
+./tools/misc/vds/UC_common.h
+
# h5stat sources
./tools/h5stat/Makefile.am
@@ -1628,6 +1654,43 @@
./tools/testfiles/pbits/tpbitsOverlapped.ddl
./tools/testfiles/packedbits.h5
+# h5dump vds validation
+./tools/testfiles/vds/tvds-1.ddl
+./tools/testfiles/vds/tvds-2.ddl
+./tools/testfiles/vds/tvds-3_1.ddl
+./tools/testfiles/vds/tvds-3_2.ddl
+./tools/testfiles/vds/tvds-4.ddl
+./tools/testfiles/vds/tvds-5.ddl
+./tools/testfiles/vds/tvds_layout-1.ddl
+./tools/testfiles/vds/tvds_layout-2.ddl
+./tools/testfiles/vds/tvds_layout-3_1.ddl
+./tools/testfiles/vds/tvds_layout-3_2.ddl
+./tools/testfiles/vds/tvds_layout-4.ddl
+./tools/testfiles/vds/tvds_layout-5.ddl
+./tools/testfiles/vds/1_a.h5
+./tools/testfiles/vds/1_b.h5
+./tools/testfiles/vds/1_c.h5
+./tools/testfiles/vds/1_d.h5
+./tools/testfiles/vds/1_e.h5
+./tools/testfiles/vds/1_f.h5
+./tools/testfiles/vds/1_vds.h5
+./tools/testfiles/vds/2_a.h5
+./tools/testfiles/vds/2_b.h5
+./tools/testfiles/vds/2_c.h5
+./tools/testfiles/vds/2_d.h5
+./tools/testfiles/vds/2_e.h5
+./tools/testfiles/vds/2_vds.h5
+./tools/testfiles/vds/3_1_vds.h5
+./tools/testfiles/vds/3_2_vds.h5
+./tools/testfiles/vds/4_0.h5
+./tools/testfiles/vds/4_1.h5
+./tools/testfiles/vds/4_2.h5
+./tools/testfiles/vds/4_vds.h5
+./tools/testfiles/vds/5_a.h5
+./tools/testfiles/vds/5_b.h5
+./tools/testfiles/vds/5_c.h5
+./tools/testfiles/vds/5_vds.h5
+
# h5dump h5import validation
./tools/testfiles/out3.h5import
./tools/testfiles/tordergr.h5
@@ -1704,7 +1767,13 @@
./tools/testfiles/thlinks-nodangle-1.ls
./tools/testfiles/tudlink-1.ls
-
+# h5ls vds validation
+./tools/testfiles/vds/tvds-1.ls
+./tools/testfiles/vds/tvds-2.ls
+./tools/testfiles/vds/tvds-3_1.ls
+./tools/testfiles/vds/tvds-3_2.ls
+./tools/testfiles/vds/tvds-4.ls
+./tools/testfiles/vds/tvds-5.ls
#additional test input and output for h5dump XML
./tools/testfiles/tall.h5.xml
@@ -2019,6 +2088,10 @@
./tools/h5diff/testfiles/tmptest.he5
./tools/h5diff/testfiles/h5diff_tmp2.txt
./tools/h5diff/testfiles/tmpSingleSiteBethe.output.h5
+#vds
+./tools/h5diff/testfiles/h5diff_v1.txt
+./tools/h5diff/testfiles/h5diff_v2.txt
+./tools/h5diff/testfiles/h5diff_v3.txt
#test files for h5repack
./tools/h5repack/testfiles/README
@@ -2393,6 +2466,7 @@
./tools/h5dump/CMakeTests.cmake
./tools/h5dump/CMakeTestsPBITS.cmake
./tools/h5dump/CMakeTestsXML.cmake
+./tools/h5dump/CMakeTestsVDS.cmake
./tools/h5import/CMakeLists.txt
./tools/h5import/CMakeTests.cmake
./tools/h5jam/CMakeLists.txt
@@ -2406,6 +2480,7 @@
./tools/lib/CMakeLists.txt
./tools/misc/CMakeLists.txt
./tools/misc/CMakeTests.cmake
+./tools/misc/vds/CMakeLists.txt
./tools/perform/CMakeLists.txt
./tools/perform/CMakeTests.cmake
diff --git a/bin/trace b/bin/trace
index da6673c..deed3bc 100755
--- a/bin/trace
+++ b/bin/trace
@@ -41,6 +41,7 @@ $Source = "";
"H5D_mpio_no_collective_cause_t" => "Dn",
"H5D_mpio_actual_chunk_opt_mode_t" => "Do",
"H5D_space_status_t" => "Ds",
+ "H5D_vds_view_t" => "Dv",
"H5FD_mpio_xfer_t" => "Dt",
"herr_t" => "e",
"H5E_direction_t" => "Ed",
diff --git a/configure b/configure
index e9713e2..fd230cc 100755
--- a/configure
+++ b/configure
@@ -22856,7 +22856,7 @@ $as_echo_n "checking whether make will build with undefined variables... " >&6;
cat >maketest <<EOF
foo: \$(UNDEFINED) \$(UNDEFINED2)
- @echo \$(UNDEFINED3) works
+ echo \$(UNDEFINED3) works
EOF
if (${MAKE-make} -f maketest foo) >/dev/null 2>&1; then
@@ -27178,9 +27178,9 @@ fi
## Default to no if producton is enabled
if test "X-$DEBUG_PKG" = X- ; then
if test "$enable_production" = yes ; then
- DEBUG_PKG=no
+ DEBUG_PKG=no
else
- DEBUG_PKG=yes
+ DEBUG_PKG=yes
fi
fi
@@ -27554,7 +27554,7 @@ int
main ()
{
MPI_Init(0, (void *)0);
- MPI_File_open(0, (void *)0, 0, 0, (void *)0);
+ MPI_File_open(0, (void *)0, 0, 0, (void *)0);
;
return 0;
}
@@ -27565,7 +27565,7 @@ $as_echo "yes" >&6; }
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
- as_fn_error $? "unable to link a simple MPI-IO C program" "$LINENO" 5
+ as_fn_error $? "unable to link a simple MPI-IO C program" "$LINENO" 5
fi
rm -f core conftest.err conftest.$ac_objext \
conftest$ac_exeext conftest.$ac_ext
@@ -32237,8 +32237,10 @@ do
"tools/h5dump/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5dump/Makefile" ;;
"tools/h5dump/testh5dump.sh") CONFIG_FILES="$CONFIG_FILES tools/h5dump/testh5dump.sh" ;;
"tools/h5dump/testh5dumppbits.sh") CONFIG_FILES="$CONFIG_FILES tools/h5dump/testh5dumppbits.sh" ;;
+ "tools/h5dump/testh5dumpvds.sh") CONFIG_FILES="$CONFIG_FILES tools/h5dump/testh5dumpvds.sh" ;;
"tools/h5dump/testh5dumpxml.sh") CONFIG_FILES="$CONFIG_FILES tools/h5dump/testh5dumpxml.sh" ;;
"tools/h5ls/testh5ls.sh") CONFIG_FILES="$CONFIG_FILES tools/h5ls/testh5ls.sh" ;;
+ "tools/h5ls/testh5lsvds.sh") CONFIG_FILES="$CONFIG_FILES tools/h5ls/testh5lsvds.sh" ;;
"tools/h5import/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5import/Makefile" ;;
"tools/h5import/h5importtestutil.sh") CONFIG_FILES="$CONFIG_FILES tools/h5import/h5importtestutil.sh" ;;
"tools/h5diff/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5diff/Makefile" ;;
@@ -32257,6 +32259,7 @@ do
"tools/misc/h5cc") CONFIG_FILES="$CONFIG_FILES tools/misc/h5cc" ;;
"tools/misc/testh5mkgrp.sh") CONFIG_FILES="$CONFIG_FILES tools/misc/testh5mkgrp.sh" ;;
"tools/misc/testh5repart.sh") CONFIG_FILES="$CONFIG_FILES tools/misc/testh5repart.sh" ;;
+ "tools/misc/vds/Makefile") CONFIG_FILES="$CONFIG_FILES tools/misc/vds/Makefile" ;;
"tools/h5stat/testh5stat.sh") CONFIG_FILES="$CONFIG_FILES tools/h5stat/testh5stat.sh" ;;
"tools/h5stat/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5stat/Makefile" ;;
"tools/perform/Makefile") CONFIG_FILES="$CONFIG_FILES tools/perform/Makefile" ;;
diff --git a/configure.ac b/configure.ac
index b441cad..eef593a 100644
--- a/configure.ac
+++ b/configure.ac
@@ -187,7 +187,7 @@ AC_SUBST([PAC_C_MAX_REAL_PRECISION])
## ----------------------------------------------------------------------
## Some platforms have broken basename, and/or xargs programs. Check
## that it actually does what it's supposed to do. Catch this early
-## since configure and scripts relies upon them heavily and there's
+## since configure and scripts relies upon them heavily and there's
## no use continuing if it's broken.
##
AC_MSG_CHECKING([if basename works])
@@ -335,7 +335,7 @@ AC_ARG_ENABLE([unsupported],
[Allow unsupported combinations of configure options])],
[ALLOW_UNSUPPORTED=$enableval])
-case "X-$ALLOW_UNSUPPORTED" in
+case "X-$ALLOW_UNSUPPORTED" in
X-|X-no)
AC_MSG_RESULT([no])
;;
@@ -416,7 +416,7 @@ if test "X$HDF_FORTRAN" = "Xyes"; then
[cat fortran/src/H5config_f.inc | sed '1d;s%^/\* \(.*\) \*/%\1%;s/#define /#define H5_/;s/#undef /#undef H5_/' >fortran/src/H5config_f.inc.tmp; mv -f fortran/src/H5config_f.inc.tmp fortran/src/H5config_f.inc])
AC_SUBST([FC]) HDF_FORTRAN=yes
-
+
HDF5_INTERFACES="$HDF5_INTERFACES fortran"
## --------------------------------------------------------------------
@@ -441,7 +441,7 @@ if test "X$HDF_FORTRAN" = "Xyes"; then
## --------------------------------------------------------------------
## Check for a Fortran compiler and how to include modules.
- ##
+ ##
AC_PROG_FC([PAC_FC_SEARCH_LIST],)
AC_F9X_MODS
@@ -631,8 +631,8 @@ if test "X$HDF_CXX" = "Xyes"; then
# Checking if C++ can handle namespaces
PAC_PROG_CXX_NAMESPACE
-
- # Checking if C++ has offsetof extension
+
+ # Checking if C++ has offsetof extension
PAC_PROG_CXX_OFFSETOF
# if C++ can handle static cast
@@ -781,7 +781,7 @@ if test "X${HDF_FORTRAN}" = "Xyes" && test "X${enable_shared}" != "Xno"; then
H5_FORTRAN_SHARED="yes"
## Disable fortran shared libraries on Mac. (MAM - 03/30/11)
-
+
case "`uname`" in
Darwin*)
H5_FORTRAN_SHARED="no"
@@ -790,7 +790,7 @@ if test "X${HDF_FORTRAN}" = "Xyes" && test "X${enable_shared}" != "Xno"; then
esac
## Report results of check(s)
-
+
if test "X${H5_FORTRAN_SHARED}" = "Xno"; then
AC_MSG_RESULT([no])
AC_MSG_WARN([$CHECK_WARN])
@@ -826,7 +826,7 @@ LT_INIT([dlopen,win32-dll])
## ----------------------------------------------------------------------
## Check if we should install only statically linked executables.
## This check needs to occur after libtool is initialized because
-## we check a libtool cache value and may issue a warning based
+## we check a libtool cache value and may issue a warning based
## on its result.
AC_MSG_CHECKING([if we should install only statically linked executables])
AC_ARG_ENABLE([static_exec],
@@ -895,7 +895,7 @@ esac
AC_SUBST([AM_MAKEFLAGS]) AM_MAKEFLAGS=""
## Don't run test if MAKE is defined but is the empty string
-if test -n "${MAKE-make}"; then
+if test -n "${MAKE-make}"; then
AC_MSG_CHECKING([whether make will build with undefined variables])
@@ -1047,11 +1047,11 @@ fi
## ----------------------------------------------------------------------
## Use the macro _AC_SYS_LARGEFILE_MACRO_VALUE to test defines
-## that might need to be set for largefile support to behave
+## that might need to be set for largefile support to behave
## correctly. This macro is defined in acsite.m4 and overrides
## the version provided by Autoconf (as of v2.65). The custom
-## macro additionally adds the appropriate defines to AM_CPPFLAGS
-## so that later configure checks have them visible.
+## macro additionally adds the appropriate defines to AM_CPPFLAGS
+## so that later configure checks have them visible.
## Check for _FILE_OFFSET_BITS
_AC_SYS_LARGEFILE_MACRO_VALUE([_FILE_OFFSET_BITS], [64],
@@ -1072,16 +1072,16 @@ fi
##
case "$host_cpu-$host_vendor-$host_os" in
*linux*)
- ## Make available various LFS-related routines using the following
+ ## Make available various LFS-related routines using the following
## _LARGEFILE*_SOURCE macros.
AM_CPPFLAGS="-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS"
## Add POSIX support on Linux systems, so <features.h> defines
## __USE_POSIX, which is required to get the prototype for fdopen
- ## defined correctly in <stdio.h>.
+ ## defined correctly in <stdio.h>.
##
## This flag was removed from h5cc as of 2009-10-17 when it was found
- ## that the flag broke compiling netCDF-4 code with h5cc, but kept in
+ ## that the flag broke compiling netCDF-4 code with h5cc, but kept in
## H5_CPPFLAGS because fdopen and HDfdopen fail without it. HDfdopen
## is used only by H5_debug_mask which is used only when debugging in
## H5_init_library (all in H5.c). When the flag was removed this was
@@ -1108,7 +1108,7 @@ case "$host_cpu-$host_vendor-$host_os" in
## correctly in <stdio.h>
## Linking to the bsd-compat library is required as per the gcc manual:
## http://www.gnu.org/s/libc/manual/html_node/Feature-Test-Macros.html
- ## however, we do not do this since it breaks the big test on some
+ ## however, we do not do this since it breaks the big test on some
## older platforms.
H5_CPPFLAGS="-D_BSD_SOURCE $H5_CPPFLAGS"
@@ -1119,7 +1119,7 @@ case "$host_cpu-$host_vendor-$host_os" in
;;
esac
-## Need to add the AM_ and H5_ into CFLAGS/CPPFLAGS to make them visible
+## Need to add the AM_ and H5_ into CFLAGS/CPPFLAGS to make them visible
## for configure checks.
## Note: Both will be restored by the end of configure.
CPPFLAGS="$H5_CPPFLAGS $AM_CPPFLAGS $CPPFLAGS"
@@ -1430,17 +1430,17 @@ case $withval in
fi
;;
esac
-
+
saved_CPPFLAGS="$CPPFLAGS"
saved_AM_CPPFLAGS="$AM_CPPFLAGS"
saved_LDFLAGS="$LDFLAGS"
saved_AM_LDFLAGS="$AM_LDFLAGS"
-
+
if test -n "$szlib_inc"; then
CPPFLAGS="$CPPFLAGS -I$szlib_inc"
AM_CPPFLAGS="$AM_CPPFLAGS -I$szlib_inc"
fi
-
+
AC_CHECK_HEADERS([szlib.h],
[HAVE_SZLIB_H="yes"],
[CPPFLAGS="$saved_CPPFLAGS"; AM_CPPFLAGS="$saved_AM_CPPFLAGS"] [unset HAVE_SZLIB])
@@ -1449,7 +1449,7 @@ case $withval in
LDFLAGS="$LDFLAGS -L$szlib_lib"
AM_LDFLAGS="$AM_LDFLAGS -L$szlib_lib"
fi
-
+
if test "x$HAVE_SZLIB" = "xyes" -a "x$HAVE_SZLIB_H" = "xyes"; then
AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress],,
[LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset HAVE_SZLIB])
@@ -1466,7 +1466,7 @@ if test "x$HAVE_SZLIB" = "xyes" -a "x$HAVE_SZLIB_H" = "xyes"; then
AC_MSG_CHECKING([for szlib encoder])
## Set LD_LIBRARY_PATH so encoder test can find the library and run.
- ## Also add LL_PATH substitution to Makefiles so they can use the
+ ## Also add LL_PATH substitution to Makefiles so they can use the
## path as well, for testing examples.
if test -z "$LD_LIBRARY_PATH"; then
export LD_LIBRARY_PATH="$szlib_lib"
@@ -1489,25 +1489,25 @@ if test "x$HAVE_SZLIB" = "xyes" -a "x$HAVE_SZLIB_H" = "xyes"; then
]])]
, [hdf5_cv_szlib_can_encode=yes], [hdf5_cv_szlib_can_encode=no],)]
)
-
- AC_DEFINE([HAVE_FILTER_SZIP], [1],
+
+ AC_DEFINE([HAVE_FILTER_SZIP], [1],
[Define if support for szip filter is enabled])
USE_FILTER_SZIP="yes"
if test ${hdf5_cv_szlib_can_encode} = "yes"; then
AC_MSG_RESULT([yes])
- fi
+ fi
if test ${hdf5_cv_szlib_can_encode} = "no"; then
AC_MSG_RESULT([no])
- fi
-
+ fi
+
## Add "szip" to external filter list
if test ${hdf5_cv_szlib_can_encode} = "yes"; then
if test "X$EXTERNAL_FILTERS" != "X"; then
EXTERNAL_FILTERS="${EXTERNAL_FILTERS},"
fi
EXTERNAL_FILTERS="${EXTERNAL_FILTERS}szip(encoder)"
- fi
+ fi
if test ${hdf5_cv_szlib_can_encode} = "no"; then
if test "X$EXTERNAL_FILTERS" != "X"; then
EXTERNAL_FILTERS="${EXTERNAL_FILTERS},"
@@ -1560,7 +1560,7 @@ case "X-$THREADSAFE" in
AC_MSG_RESULT([no])
;;
X-yes)
- THREADSAFE=yes
+ THREADSAFE=yes
AC_MSG_RESULT([yes])
;;
*)
@@ -1867,7 +1867,7 @@ for hdf5_cv_printf_ll in l ll L q unknown; do
done])
AC_MSG_RESULT([%${hdf5_cv_printf_ll}d and %${hdf5_cv_printf_ll}u])
-AC_DEFINE_UNQUOTED([PRINTF_LL_WIDTH], ["$hdf5_cv_printf_ll"],
+AC_DEFINE_UNQUOTED([PRINTF_LL_WIDTH], ["$hdf5_cv_printf_ll"],
[Width for printf() for type `long long' or `__int64', use `ll'])
@@ -1882,16 +1882,16 @@ AC_ARG_ENABLE([debug],
also specify a comma-separated list of
package names without the leading H5 or
the word no. The default is most packages
- if production is disabled; no if it is enabled.
+ if production is disabled; no if it is enabled.
])],
[DEBUG_PKG=$enableval])
## Default to no if producton is enabled
if test "X-$DEBUG_PKG" = X- ; then
if test "$enable_production" = yes ; then
- DEBUG_PKG=no
+ DEBUG_PKG=no
else
- DEBUG_PKG=yes
+ DEBUG_PKG=yes
fi
fi
@@ -2139,11 +2139,11 @@ case "X-$enable_parallel" in
## Try link a simple MPI program.
AC_MSG_CHECKING([whether a simple MPI-IO C program can be linked])
AC_LINK_IFELSE([AC_LANG_PROGRAM([[#include <mpi.h>]],
- [[ MPI_Init(0, (void *)0);
- MPI_File_open(0, (void *)0, 0, 0, (void *)0);]])],
- [AC_MSG_RESULT([yes])],
- [AC_MSG_RESULT([no])
- AC_MSG_ERROR([unable to link a simple MPI-IO C program])])
+ [[ MPI_Init(0, (void *)0);
+ MPI_File_open(0, (void *)0, 0, 0, (void *)0);]])],
+ [AC_MSG_RESULT([yes])],
+ [AC_MSG_RESULT([no])
+ AC_MSG_ERROR([unable to link a simple MPI-IO C program])])
if test "X$HDF_FORTRAN" = "Xyes"; then
PAC_PROG_FC_MPI_CHECK
@@ -2186,7 +2186,7 @@ if test -n "$PARALLEL"; then
fi
## If RUNSERIAL or RUNPARALLEL is the word `none' then replace it with
- ## the empty string. This means that no launch commands were requested,
+ ## the empty string. This means that no launch commands were requested,
## so we will not use any launch commands.
if test "X$RUNSERIAL" = "Xnone"; then
RUNSERIAL=""
@@ -2252,7 +2252,7 @@ if test -n "$PARALLEL"; then
fi
;;
esac
-
+
if test -n "$mpe_inc"; then
saved_CPPFLAGS="$CPPFLAGS"
saved_AM_CPPFLAGS="$AM_CPPFLAGS"
@@ -2262,7 +2262,7 @@ if test -n "$PARALLEL"; then
else
AC_CHECK_HEADERS([mpe.h],, [unset MPE])
fi
-
+
if test -n "$mpe_lib"; then
saved_LDFLAGS="$LDFLAGS"
saved_AM_LDFLAGS="$AM_LDFLAGS"
@@ -2347,12 +2347,12 @@ AC_DEFINE_UNQUOTED([DEFAULT_PLUGINDIR], ["$default_plugindir"],
## Decide whether the presence of user's exception handling functions is
## checked and data conversion exceptions are returned. This is mainly
## for the speed optimization of hard conversions. Soft conversions can
-## actually benefit little.
+## actually benefit little.
##
AC_MSG_CHECKING([whether exception handling functions is checked during data conversions])
AC_ARG_ENABLE([dconv-exception],
[AS_HELP_STRING([--enable-dconv-exception],
- [if exception handling functions is checked during
+ [if exception handling functions is checked during
data conversions [default=yes]])],
[DCONV_EXCEPTION=$enableval], [DCONV_EXCEPTION=yes])
@@ -2406,9 +2406,9 @@ esac
## ----------------------------------------------------------------------
## Set the flag to indicate that the machine is using a special algorithm to convert
-## 'long double' to '(unsigned) long' values. (This flag should only be set for
-## the IBM Power6 Linux. When the bit sequence of long double is
-## 0x4351ccf385ebc8a0bfcc2a3c3d855620, the converted value of (unsigned)long
+## 'long double' to '(unsigned) long' values. (This flag should only be set for
+## the IBM Power6 Linux. When the bit sequence of long double is
+## 0x4351ccf385ebc8a0bfcc2a3c3d855620, the converted value of (unsigned)long
## is 0x004733ce17af227f, not the same as the library's conversion to 0x004733ce17af2282.
## The machine's conversion gets the correct value. We define the macro and disable
## this kind of test until we figure out what algorithm they use.
@@ -2429,12 +2429,12 @@ else
unsigned char s[16];
unsigned char s2[8];
int ret = 1;
-
+
if(sizeof(long double) == 16 && sizeof(long) == 8) {
- /*make sure the long double type has 16 bytes in size and
+ /*make sure the long double type has 16 bytes in size and
* 11 bits of exponent. If it is,
- *the bit sequence should be like below. It's not
- *a decent way to check but this info isn't available. */
+ *the bit sequence should be like below. It's not
+ *a decent way to check but this info isn't available. */
memcpy(s, &ld, 16);
if(s[0]==0x43 && s[1]==0x51 && s[2]==0xcc && s[3]==0xf3 &&
s[4]==0x85 && s[5]==0xeb && s[6]==0xc8 && s[7]==0xa0 &&
@@ -2468,8 +2468,8 @@ else
if(s2[0]==0x00 && s2[1]==0x47 && s2[2]==0x33 && s2[3]==0xce &&
s2[4]==0x17 && s2[5]==0xaf && s2[6]==0x22 && s2[7]==0x7f)
ret = 0;
- }
- }
+ }
+ }
exit(ret);
]])]
, [hdf5_cv_ldouble_to_long_special=yes], [hdf5_cv_ldouble_to_long_special=no],)])
@@ -2485,10 +2485,10 @@ fi
## ----------------------------------------------------------------------
## Set the flag to indicate that the machine is using a special algorithm
-## to convert some values of '(unsigned) long' to 'long double' values.
-## (This flag should be off for all machines, except for IBM Power6 Linux,
-## when the bit sequences are 003fff..., 007fff..., 00ffff..., 01ffff...,
-## ..., 7fffff..., the compiler uses a unknown algorithm. We define a
+## to convert some values of '(unsigned) long' to 'long double' values.
+## (This flag should be off for all machines, except for IBM Power6 Linux,
+## when the bit sequences are 003fff..., 007fff..., 00ffff..., 01ffff...,
+## ..., 7fffff..., the compiler uses a unknown algorithm. We define a
## macro and skip the test for now until we know about the algorithm.
##
AC_MSG_CHECKING([if using special algorithm to convert (unsigned) long to long double values])
@@ -2506,17 +2506,17 @@ else
unsigned long ull;
unsigned char s[16];
int flag=0, ret=1;
-
+
/*Determine if long double has 16 byte in size, 11 bit exponent, and
- *the bias is 0x3ff */
- if(sizeof(long double) == 16) {
+ *the bias is 0x3ff */
+ if(sizeof(long double) == 16) {
ld = 1.0L;
memcpy(s, &ld, 16);
if(s[0]==0x3f && s[1]==0xf0 && s[2]==0x00 && s[3]==0x00 &&
- s[4]==0x00 && s[5]==0x00 && s[6]==0x00 && s[7]==0x00)
- flag = 1;
+ s[4]==0x00 && s[5]==0x00 && s[6]==0x00 && s[7]==0x00)
+ flag = 1;
}
-
+
if(flag==1 && sizeof(long)==8) {
ll = 0x003fffffffffffffL;
ld = (long double)ll;
@@ -2532,7 +2532,7 @@ else
s[8]==0xbf && s[9]==0xf0 && s[10]==0x00 && s[11]==0x00 &&
s[12]==0x00 && s[13]==0x00 && s[14]==0x00 && s[15]==0x00)
ret = 0;
- }
+ }
if(flag==1 && sizeof(unsigned long)==8) {
ull = 0xffffffffffffffffUL;
ld = (long double)ull;
@@ -2550,7 +2550,7 @@ else
s[8]==0xbf && s[9]==0xf0 && s[10]==0x00 && s[11]==0x00 &&
s[12]==0x00 && s[13]==0x00 && s[14]==0x00 && s[15]==0x00)
ret = 0;
- }
+ }
exit(ret);
]])]
, [hdf5_cv_long_to_ldouble_special=yes], [hdf5_cv_long_to_ldouble_special=no],)])
@@ -2928,9 +2928,9 @@ esac
AC_MSG_CHECKING([whether to have library information embedded in the executables])
AC_ARG_ENABLE([embedded-libinfo],
[AS_HELP_STRING([--enable-embedded-libinfo],
- [Enable embedded library information [default=yes]])],
- [enable_embedded_libinfo=$enableval],
- [enable_embedded_libinfo=yes])
+ [Enable embedded library information [default=yes]])],
+ [enable_embedded_libinfo=$enableval],
+ [enable_embedded_libinfo=yes])
if test "${enable_embedded_libinfo}" = "yes"; then
AC_MSG_RESULT([yes])
@@ -3099,8 +3099,10 @@ AC_CONFIG_FILES([src/libhdf5.settings
tools/h5dump/Makefile
tools/h5dump/testh5dump.sh
tools/h5dump/testh5dumppbits.sh
+ tools/h5dump/testh5dumpvds.sh
tools/h5dump/testh5dumpxml.sh
tools/h5ls/testh5ls.sh
+ tools/h5ls/testh5lsvds.sh
tools/h5import/Makefile
tools/h5import/h5importtestutil.sh
tools/h5diff/Makefile
@@ -3119,6 +3121,7 @@ AC_CONFIG_FILES([src/libhdf5.settings
tools/misc/h5cc
tools/misc/testh5mkgrp.sh
tools/misc/testh5repart.sh
+ tools/misc/vds/Makefile
tools/h5stat/testh5stat.sh
tools/h5stat/Makefile
tools/perform/Makefile
diff --git a/examples/CMakeLists.txt b/examples/CMakeLists.txt
index 7953161..8cabba6 100644
--- a/examples/CMakeLists.txt
+++ b/examples/CMakeLists.txt
@@ -10,20 +10,20 @@ add_definitions (${HDF_EXTRA_C_FLAGS})
# Define Sources
#-----------------------------------------------------------------------------
set (examples
- h5_crtdat
- h5_rdwt
- h5_crtatt
- h5_crtgrp
- h5_crtgrpar
- h5_crtgrpd
- h5_cmprss
- h5_extend
- h5_subset
h5_write
h5_read
h5_extend_write
h5_chunk_read
h5_compound
+ h5_crtgrpar
+ h5_crtgrpd
+ h5_subset
+ h5_cmprss
+ h5_crtdat
+ h5_rdwt
+ h5_crtatt
+ h5_extend
+ h5_crtgrp
h5_group
h5_select
h5_attribute
@@ -34,6 +34,14 @@ set (examples
h5_extlink
h5_elink_unix2win
h5_shared_mesg
+ h5_vds
+ h5_vds-exc
+ h5_vds-exclim
+ h5_vds-eiger
+ h5_vds-simpleIO
+ h5_vds-percival
+ h5_vds-percival-unlim
+ h5_vds-percival-unlim-maxmin
)
foreach (example ${examples})
diff --git a/examples/CMakeTests.cmake b/examples/CMakeTests.cmake
index 42b42b3..2cf82b8 100644
--- a/examples/CMakeTests.cmake
+++ b/examples/CMakeTests.cmake
@@ -46,6 +46,18 @@
blue/prefix_target.h5
red/prefix_target.h5
u2w/u2w_target.h5
+ vds.h5
+ vds-excalibur.h5
+ vds-exclim.h5
+ vds-percival.h5
+ vds-percival-unlim.h5
+ vds-percival-unlim-maxmin.h5
+ a.h5
+ b.h5
+ c.h5
+ d.h5
+ vds-simpleIO.h5
+ vds-eiger.h5
)
if (NOT "${last_test}" STREQUAL "")
set_tests_properties (EXAMPLES-clear-objects PROPERTIES DEPENDS ${last_test})
diff --git a/examples/Makefile.am b/examples/Makefile.am
index 5d0da93..883b99d 100644
--- a/examples/Makefile.am
+++ b/examples/Makefile.am
@@ -37,7 +37,9 @@ EXAMPLE_PROG = h5_write h5_read h5_extend_write h5_chunk_read h5_compound \
h5_crtgrpd h5_subset h5_cmprss h5_rdwt h5_crtgrpar h5_extend \
h5_crtatt h5_crtgrp h5_crtdat \
h5_group h5_select h5_attribute h5_mount h5_reference h5_drivers \
- h5_ref2reg h5_extlink h5_elink_unix2win h5_shared_mesg
+ h5_ref2reg h5_extlink h5_elink_unix2win h5_shared_mesg h5_vds h5_vds-exc \
+ h5_vds-exclim h5_vds-eiger h5_vds-simpleIO h5_vds-percival \
+ h5_vds-percival-unlim h5_vds-percival-unlim-maxmin
TEST_SCRIPT=testh5cc.sh
TEST_EXAMPLES_SCRIPT=$(INSTALL_SCRIPT_FILES)
@@ -48,7 +50,9 @@ INSTALL_FILES = h5_write.c h5_read.c h5_extend_write.c h5_chunk_read.c \
h5_extend.c h5_crtatt.c h5_crtgrp.c h5_crtdat.c \
h5_compound.c h5_group.c h5_select.c h5_attribute.c h5_mount.c \
h5_reference.c h5_drivers.c h5_extlink.c h5_elink_unix2win.c \
- h5_ref2reg.c h5_shared_mesg.c ph5example.c
+ h5_ref2reg.c h5_shared_mesg.c ph5example.c h5_vds.c h5_vds-exc.c \
+ h5_vds-exclim.c h5_vds-eiger.c h5_vds-simpleIO.c h5_vds-percival.c \
+ h5_vds-percival-unlim.c h5_vds-percival-unlim-maxmin.c
@@ -117,6 +121,14 @@ h5_dtransform: $(srcdir)/h5_dtransform.c
h5_extlink: $(srcdir)/h5_extlink.c $(EXTLINK_DIRS)
h5_elink_unix2win: $(srcdir)/h5_elink_unix2win.c $(EXTLINK_DIRS)
h5_shared_mesg: $(srcdir)/h5_shared_mesg.c
+h5_vds: $(srcdir)/h5_vds.c
+h5_vds-exc: $(srcdir)/h5_vds-exc.c
+h5_vds-exclim: $(srcdir)/h5_vds-exclim.c
+h5_vds-eiger: $(srcdir)/h5_vds-eiger.c
+h5_vds-simpleIO: $(srcdir)/h5_vds-simpleIO.c
+h5_vds-percival: $(srcdir)/h5_vds-percival.c
+h5_vds-percival-unlim: $(srcdir)/h5_vds-percival-unlim.c
+h5_vds-percival-unlim-maxmin: $(srcdir)/h5_vds-percival-unlim-maxmin.c
if BUILD_SHARED_SZIP_CONDITIONAL
LD_LIBRARY_PATH=$(LL_PATH)
diff --git a/examples/Makefile.in b/examples/Makefile.in
index 94a0b54..c403545 100644
--- a/examples/Makefile.in
+++ b/examples/Makefile.in
@@ -633,7 +633,9 @@ EXAMPLE_PROG = h5_write h5_read h5_extend_write h5_chunk_read h5_compound \
h5_crtgrpd h5_subset h5_cmprss h5_rdwt h5_crtgrpar h5_extend \
h5_crtatt h5_crtgrp h5_crtdat \
h5_group h5_select h5_attribute h5_mount h5_reference h5_drivers \
- h5_ref2reg h5_extlink h5_elink_unix2win h5_shared_mesg
+ h5_ref2reg h5_extlink h5_elink_unix2win h5_shared_mesg h5_vds h5_vds-exc \
+ h5_vds-exclim h5_vds-eiger h5_vds-simpleIO h5_vds-percival \
+ h5_vds-percival-unlim h5_vds-percival-unlim-maxmin
TEST_SCRIPT = testh5cc.sh
TEST_EXAMPLES_SCRIPT = $(INSTALL_SCRIPT_FILES)
@@ -645,7 +647,9 @@ INSTALL_FILES = h5_write.c h5_read.c h5_extend_write.c h5_chunk_read.c \
h5_extend.c h5_crtatt.c h5_crtgrp.c h5_crtdat.c \
h5_compound.c h5_group.c h5_select.c h5_attribute.c h5_mount.c \
h5_reference.c h5_drivers.c h5_extlink.c h5_elink_unix2win.c \
- h5_ref2reg.c h5_shared_mesg.c ph5example.c
+ h5_ref2reg.c h5_shared_mesg.c ph5example.c h5_vds.c h5_vds-exc.c \
+ h5_vds-exclim.c h5_vds-eiger.c h5_vds-simpleIO.c h5_vds-percival.c \
+ h5_vds-percival-unlim.c h5_vds-percival-unlim-maxmin.c
# The external link examples demonstrate how to use paths; they need
@@ -1098,6 +1102,14 @@ h5_dtransform: $(srcdir)/h5_dtransform.c
h5_extlink: $(srcdir)/h5_extlink.c $(EXTLINK_DIRS)
h5_elink_unix2win: $(srcdir)/h5_elink_unix2win.c $(EXTLINK_DIRS)
h5_shared_mesg: $(srcdir)/h5_shared_mesg.c
+h5_vds: $(srcdir)/h5_vds.c
+h5_vds-exc: $(srcdir)/h5_vds-exc.c
+h5_vds-exclim: $(srcdir)/h5_vds-exclim.c
+h5_vds-eiger: $(srcdir)/h5_vds-eiger.c
+h5_vds-simpleIO: $(srcdir)/h5_vds-simpleIO.c
+h5_vds-percival: $(srcdir)/h5_vds-percival.c
+h5_vds-percival-unlim: $(srcdir)/h5_vds-percival-unlim.c
+h5_vds-percival-unlim-maxmin: $(srcdir)/h5_vds-percival-unlim-maxmin.c
# How to create EXAMPLEDIR if it doesn't already exist
$(EXAMPLEDIR):
diff --git a/examples/h5_vds-eiger.c b/examples/h5_vds-eiger.c
new file mode 100644
index 0000000..ea22243
--- /dev/null
+++ b/examples/h5_vds-eiger.c
@@ -0,0 +1,177 @@
+/************************************************************
+
+ This example illustrates the concept of the virtual dataset.
+ Eiger use case. Every 5 frames 10x10 are in the source
+ dataset "/A" in file with the name f-<#>.h5
+ This file is intended for use with HDF5 Library version 1.10
+
+ ************************************************************/
+/* EIP Add link to the picture */
+
+#include "hdf5.h"
+#include <stdio.h>
+#include <stdlib.h>
+
+#define FILE "vds-eiger.h5"
+#define DATASET "VDS-Eiger"
+#define VDSDIM0 5
+#define VDSDIM1 10
+#define VDSDIM2 10
+#define DIM0 5
+#define DIM1 10
+#define DIM2 10
+#define RANK 3
+
+int
+main (void)
+{
+ hid_t file, src_space, vspace,
+ dset; /* Handles */
+ hid_t dcpl;
+ herr_t status;
+ hsize_t vdsdims[3] = {VDSDIM0, VDSDIM1, VDSDIM2},
+ vdsdims_max[3] = {H5S_UNLIMITED, VDSDIM1, VDSDIM1},
+ dims[3] = {DIM0, DIM1, DIM2},
+ start[3], /* Hyperslab parameters */
+ stride[3],
+ count[3],
+ block[3];
+ hsize_t start_out[3], /* Hyperslab parameter out */
+ stride_out[3],
+ count_out[3],
+ block_out[3];
+ int i;
+ H5D_layout_t layout; /* Storage layout */
+ size_t num_map; /* Number of mappings */
+ ssize_t len; /* Length of the string; also a return value */
+ char *filename;
+ char *dsetname;
+
+
+ file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create VDS dataspace. */
+ vspace = H5Screate_simple (RANK, vdsdims, vdsdims_max);
+
+ /* Create dataspaces for the source dataset. */
+ src_space = H5Screate_simple (RANK, dims, NULL);
+
+ /* Create VDS creation property */
+ dcpl = H5Pcreate (H5P_DATASET_CREATE);
+
+ /* Initialize hyperslab values */
+
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ stride[0] = DIM0;
+ stride[1] = 1;
+ stride[2] = 1;
+ count[0] = H5S_UNLIMITED;
+ count[1] = 1;
+ count[2] = 1;
+ block[0] = DIM0;
+ block[1] = DIM1;
+ block[2] = DIM2;
+
+ /*
+ * Build the mappings
+ *
+ */
+ status = H5Sselect_hyperslab (vspace, H5S_SELECT_SET, start, stride, count, block);
+ status = H5Pset_virtual (dcpl, vspace, "f-%b.h5", "/A", src_space);
+
+
+
+ /* Create a virtual dataset */
+ dset = H5Dcreate2 (file, DATASET, H5T_NATIVE_INT, vspace, H5P_DEFAULT,
+ dcpl, H5P_DEFAULT);
+ status = H5Sclose (vspace);
+ status = H5Sclose (src_space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+
+ /*
+ * Now we begin the read section of this example.
+ */
+
+ /*
+ * Open file and dataset using the default properties.
+ */
+ file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dset = H5Dopen2 (file, DATASET, H5P_DEFAULT);
+
+ /*
+ * Get creation property list and mapping properties.
+ */
+ dcpl = H5Dget_create_plist (dset);
+
+ /*
+ * Get storage layout.
+ */
+ layout = H5Pget_layout (dcpl);
+
+ if (H5D_VIRTUAL == layout)
+ printf(" Dataset has a virtual layout \n");
+ else
+ printf(" Wrong layout found \n");
+
+ /*
+ * Find number of mappings.
+ */
+ status = H5Pget_virtual_count (dcpl, &num_map);
+ printf(" Number of mappings is %d\n", (int)num_map);
+
+ /*
+ * Get mapping parameters for each mapping.
+ */
+ for (i = 0; i < (int)num_map; i++) {
+ printf(" Mapping %d \n", i);
+ printf(" Selection in the virtual dataset \n");
+ /* Get selection in the virttual dataset */
+ vspace = H5Pget_virtual_vspace (dcpl, (size_t)i);
+ if (H5Sget_select_type(vspace) == H5S_SEL_HYPERSLABS) {
+ if (H5Sis_regular_hyperslab(vspace)) {
+ status = H5Sget_regular_hyperslab (vspace, start_out, stride_out, count_out, block_out);
+ printf(" start = [%llu, %llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1], (unsigned long long)start_out[2]);
+ printf(" stride = [%llu, %llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1], (unsigned long long)stride_out[2]);
+ printf(" count = [%llu, %llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1], (unsigned long long)count_out[2]);
+ printf(" block = [%llu, %llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1], (unsigned long long)block_out[2]);
+ }
+ }
+ /* Get source file name */
+ len = H5Pget_virtual_filename (dcpl, (size_t)i, NULL, 0);
+ filename = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_filename (dcpl, (size_t)i, filename, len+1);
+ printf(" Source filename %s\n", filename);
+
+ /* Get source dataset name */
+ len = H5Pget_virtual_dsetname (dcpl, (size_t)i, NULL, 0);
+ dsetname = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_dsetname (dcpl, (size_t)i, dsetname, len+1);
+ printf(" Source dataset name %s\n", dsetname);
+
+ /* Get selection in the source dataset */
+ printf(" Selection in the source dataset ");
+ src_space = H5Pget_virtual_srcspace (dcpl, (size_t)i);
+ if(H5Sget_select_type(src_space) == H5S_SEL_ALL) {
+ printf("H5S_ALL \n");
+ }
+/* EIP read data back */
+ H5Sclose(vspace);
+ H5Sclose(src_space);
+ free(filename);
+ free(dsetname);
+ }
+
+ /*
+ * Close and release resources.
+ */
+ status = H5Pclose (dcpl);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+ return 0;
+}
+
diff --git a/examples/h5_vds-exc.c b/examples/h5_vds-exc.c
new file mode 100644
index 0000000..88d8f61
--- /dev/null
+++ b/examples/h5_vds-exc.c
@@ -0,0 +1,215 @@
+/************************************************************
+
+ This example illustrates the concept of the virtual dataset.
+ Excalibur use case with k=2 and m=3.
+ This file is intended for use with HDF5 Library version 1.10
+
+ ************************************************************/
+/* EIP Add link to the picture */
+
+#include "hdf5.h"
+#include <stdio.h>
+#include <stdlib.h>
+
+#define FILE "vds-exc.h5"
+#define DATASET "VDS-Excalibur"
+#define VDSDIM0 0
+#define VDSDIM1 15
+#define VDSDIM2 6
+#define KDIM0 0
+#define KDIM1 2
+#define KDIM2 6
+#define NDIM0 0
+#define NDIM1 3
+#define NDIM2 6
+#define RANK 3
+
+const char *SRC_FILE[] = {
+ "a.h5",
+ "b.h5",
+ "c.h5",
+ "d.h5",
+ "e.h5",
+ "f.h5"
+};
+
+const char *SRC_DATASET[] = {
+ "A",
+ "B",
+ "C",
+ "D",
+ "E",
+ "F"
+};
+
+int
+main (void)
+{
+ hid_t file, space, ksrc_space, nsrc_space, vspace,
+ src_space,
+ dset; /* Handles */
+ hid_t dcpl;
+ herr_t status;
+ hsize_t vdsdims[3] = {VDSDIM0, VDSDIM1, VDSDIM2},
+ vdsdims_max[3] = {H5S_UNLIMITED,VDSDIM1, VDSDIM2},
+ kdims[3] = {KDIM0, KDIM1, KDIM2},
+ kdims_max[3] = {H5S_UNLIMITED, KDIM1, KDIM2},
+ ndims[3] = {NDIM0, NDIM1, NDIM2},
+ ndims_max[3] = {H5S_UNLIMITED, NDIM1, NDIM2},
+ start[3], /* Hyperslab parameters */
+ stride[3],
+ count[3],
+ block[3];
+ hsize_t start_out[3],
+ stride_out[3],
+ count_out[3],
+ block_out[3];
+ int k = 2;
+ int n = 3;
+ int i;
+ H5D_layout_t layout; /* Storage layout */
+ size_t num_map; /* Number of mappings */
+ ssize_t len; /* Length of the string; also a return value */
+ char *filename;
+ char *dsetname;
+
+
+ file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create VDS dataspace. */
+ space = H5Screate_simple (RANK, vdsdims, vdsdims_max);
+ /* Create dataspaces for A, C, and E datasets. */
+ ksrc_space = H5Screate_simple (RANK, kdims, kdims_max);
+ /* Create dataspaces for B, D, and F datasets. */
+ nsrc_space = H5Screate_simple (RANK, ndims, ndims_max);
+
+ /* Create VDS creation property */
+ dcpl = H5Pcreate (H5P_DATASET_CREATE);
+
+ /* Initialize hyperslab values */
+
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ count[0] = H5S_UNLIMITED;
+ count[1] = 1;
+ count[2] = 1;
+ block[0] = 1;
+ block[1] = k;
+ block[2] = VDSDIM2;
+
+ /*
+ * Build the mappings for A, C and E source datasets.
+ *
+ */
+ for (i = 0; i < 3; i++) {
+ start[1] = (hsize_t)((k+n)*i);
+ status = H5Sselect_hyperslab (space, H5S_SELECT_SET, start, NULL, count, block);
+ status = H5Pset_virtual (dcpl, space, SRC_FILE[2*i], SRC_DATASET[2*i], ksrc_space);
+ }
+
+ /* Reinitialize block[1] */
+ block[1] = n;
+ /*
+ * Build the mappings for B, D and F source datasets.
+ *
+ */
+ for (i = 0; i < 3; i++) {
+ start[1] = (hsize_t)(k+(k+n)*i);
+ status = H5Sselect_hyperslab (space, H5S_SELECT_SET, start, NULL, count, block);
+ status = H5Pset_virtual (dcpl, space, SRC_FILE[2*i+1], SRC_DATASET[2*i+1], nsrc_space);
+ }
+
+ /* Create a virtual dataset */
+ dset = H5Dcreate2 (file, DATASET, H5T_NATIVE_INT, space, H5P_DEFAULT,
+ dcpl, H5P_DEFAULT);
+ status = H5Sclose (space);
+ status = H5Sclose (nsrc_space);
+ status = H5Sclose (ksrc_space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+
+ /*
+ * Now we begin the read section of this example.
+ */
+
+ /*
+ * Open file and dataset using the default properties.
+ */
+ file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dset = H5Dopen2 (file, DATASET, H5P_DEFAULT);
+
+ /*
+ * Get creation property list and mapping properties.
+ */
+ dcpl = H5Dget_create_plist (dset);
+
+ /*
+ * Get storage layout.
+ */
+ layout = H5Pget_layout (dcpl);
+
+ if (H5D_VIRTUAL == layout)
+ printf(" Dataset has a virtual layout \n");
+ else
+ printf("Wrong layout found \n");
+
+ /*
+ * Find number of mappings.
+ */
+ status = H5Pget_virtual_count (dcpl, &num_map);
+ printf(" Number of mappings is %lu\n", (unsigned long)num_map);
+
+ /*
+ * Get mapping parameters for each mapping.
+ */
+ for (i = 0; i < (int)num_map; i++) {
+ printf(" Mapping %d \n", i);
+ printf(" Selection in the virtual dataset \n");
+ /* Get selection in the virttual dataset */
+ vspace = H5Pget_virtual_vspace (dcpl, (size_t)i);
+ if (H5Sget_select_type(vspace) == H5S_SEL_HYPERSLABS) {
+ if (H5Sis_regular_hyperslab(vspace)) {
+ status = H5Sget_regular_hyperslab (vspace, start_out, stride_out, count_out, block_out);
+ printf(" start = [%llu, %llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1], (unsigned long long)start_out[2]);
+ printf(" stride = [%llu, %llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1], (unsigned long long)stride_out[2]);
+ printf(" count = [%llu, %llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1], (unsigned long long)count_out[2]);
+ printf(" block = [%llu, %llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1], (unsigned long long)block_out[2]);
+ }
+ }
+ /* Get source file name */
+ len = H5Pget_virtual_filename (dcpl, (size_t)i, NULL, 0);
+ filename = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_filename (dcpl, (size_t)i, filename, len+1);
+ printf(" Source filename %s\n", filename);
+
+ /* Get source dataset name */
+ len = H5Pget_virtual_dsetname (dcpl, (size_t)i, NULL, 0);
+ dsetname = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_dsetname (dcpl, (size_t)i, dsetname, len+1);
+ printf(" Source dataset name %s\n", dsetname);
+
+ /* Get selection in the source dataset */
+ printf(" Selection in the source dataset ");
+ src_space = H5Pget_virtual_srcspace (dcpl, (size_t)i);
+ if(H5Sget_select_type(src_space) == H5S_SEL_ALL) {
+ printf("H5S_ALL \n");
+ }
+ H5Sclose(vspace);
+ H5Sclose(src_space);
+ free(filename);
+ free(dsetname);
+ }
+/* EIP read data back */
+
+ /*
+ * Close and release resources.
+ */
+ status = H5Pclose (dcpl);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+ return 0;
+}
+
diff --git a/examples/h5_vds-exclim.c b/examples/h5_vds-exclim.c
new file mode 100644
index 0000000..4933471
--- /dev/null
+++ b/examples/h5_vds-exclim.c
@@ -0,0 +1,222 @@
+/************************************************************
+
+ This example illustrates the concept of the virtual dataset.
+ Excalibur use case with k=2 and m=3 and only 3 planes in
+ Z-direction (i.e., not unlimited).
+ This file is intended for use with HDF5 Library version 1.10
+
+ ************************************************************/
+/* EIP Add link to the picture */
+
+#include "hdf5.h"
+#include <stdio.h>
+#include <stdlib.h>
+
+#define FILE "vds-exclim.h5"
+#define DATASET "VDS-Excaliburlim"
+#define VDSDIM0 3
+#define VDSDIM1 15
+#define VDSDIM2 6
+#define KDIM0 3
+#define KDIM1 2
+#define KDIM2 6
+#define NDIM0 3
+#define NDIM1 3
+#define NDIM2 6
+#define RANK 3
+
+const char *SRC_FILE[] = {
+ "a.h5",
+ "b.h5",
+ "c.h5",
+ "d.h5",
+ "e.h5",
+ "f.h5"
+};
+
+const char *SRC_DATASET[] = {
+ "A",
+ "B",
+ "C",
+ "D",
+ "E",
+ "F"
+};
+
+int
+main (void)
+{
+ hid_t file, space, ksrc_space, nsrc_space, vspace,
+ src_space,
+ dset; /* Handles */
+ hid_t dcpl;
+ herr_t status;
+ hsize_t vdsdims[3] = {VDSDIM0, VDSDIM1, VDSDIM2},
+ kdims[3] = {KDIM0, KDIM1, KDIM2},
+ ndims[3] = {NDIM0, NDIM1, NDIM2},
+ start[3], /* Hyperslab parameters */
+ stride[3],
+ count[3],
+ block[3];
+ hsize_t start_out[3],
+ stride_out[3],
+ count_out[3],
+ block_out[3];
+ int k = 2;
+ int n = 3;
+ int i;
+ H5D_layout_t layout; /* Storage layout */
+ size_t num_map; /* Number of mappings */
+ ssize_t len; /* Length of the string; also a return value */
+ char *filename;
+ char *dsetname;
+
+
+ file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create VDS dataspace. */
+ space = H5Screate_simple (RANK, vdsdims, NULL);
+ /* Create dataspaces for A, C, and E datasets. */
+ ksrc_space = H5Screate_simple (RANK, kdims, NULL);
+ /* Create dataspaces for B, D, and F datasets. */
+ nsrc_space = H5Screate_simple (RANK, ndims, NULL);
+
+ /* Create VDS creation property */
+ dcpl = H5Pcreate (H5P_DATASET_CREATE);
+
+ /* Initialize hyperslab values */
+
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ count[0] = VDSDIM0;
+ count[1] = 1;
+ count[2] = 1;
+ block[0] = 1;
+ block[1] = k;
+ block[2] = VDSDIM2;
+
+ /*
+ * Build the mappings for A, C and E source datasets.
+ *
+ */
+ status = H5Sselect_hyperslab (ksrc_space, H5S_SELECT_SET, start, NULL, count, block);
+ for (i = 0; i < 3; i++) {
+ start[1] = (hsize_t)((k+n)*i);
+ status = H5Sselect_hyperslab (space, H5S_SELECT_SET, start, NULL, count, block);
+ status = H5Pset_virtual (dcpl, space, SRC_FILE[2*i], SRC_DATASET[2*i], ksrc_space);
+ }
+
+ /* Reinitialize start[0] and block[1] */
+ start[0] = 0;
+ block[1] = n;
+ /*
+ * Build the mappings for B, D and F source datasets.
+ *
+ */
+ status = H5Sselect_hyperslab (nsrc_space, H5S_SELECT_SET, start, NULL, count, block);
+ for (i = 0; i < 3; i++) {
+ start[1] = (hsize_t)(k+(k+n)*i);
+ status = H5Sselect_hyperslab (space, H5S_SELECT_SET, start, NULL, count, block);
+ status = H5Pset_virtual (dcpl, space, SRC_FILE[2*i+1], SRC_DATASET[2*i+1], nsrc_space);
+ }
+
+ /* Create a virtual dataset */
+ dset = H5Dcreate2 (file, DATASET, H5T_NATIVE_INT, space, H5P_DEFAULT,
+ dcpl, H5P_DEFAULT);
+ status = H5Sclose (space);
+ status = H5Sclose (nsrc_space);
+ status = H5Sclose (ksrc_space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+
+ /*
+ * Now we begin the read section of this example.
+ */
+
+ /*
+ * Open file and dataset using the default properties.
+ */
+ file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dset = H5Dopen2 (file, DATASET, H5P_DEFAULT);
+
+ /*
+ * Get creation property list and mapping properties.
+ */
+ dcpl = H5Dget_create_plist (dset);
+
+ /*
+ * Get storage layout.
+ */
+ layout = H5Pget_layout (dcpl);
+
+ if (H5D_VIRTUAL == layout)
+ printf(" Dataset has a virtual layout \n");
+ else
+ printf("Wrong layout found \n");
+
+ /*
+ * Find number of mappings.
+ */
+ status = H5Pget_virtual_count (dcpl, &num_map);
+ printf(" Number of mappings is %lu\n", (unsigned long)num_map);
+
+ /*
+ * Get mapping parameters for each mapping.
+ */
+ for (i = 0; i < (int)num_map; i++) {
+ printf(" Mapping %d \n", i);
+ printf(" Selection in the virtual dataset \n");
+ /* Get selection in the virttual dataset */
+ vspace = H5Pget_virtual_vspace (dcpl, (size_t)i);
+ if (H5Sget_select_type(vspace) == H5S_SEL_HYPERSLABS) {
+ if (H5Sis_regular_hyperslab(vspace)) {
+ status = H5Sget_regular_hyperslab (vspace, start_out, stride_out, count_out, block_out);
+ printf(" start = [%llu, %llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1], (unsigned long long)start_out[2]);
+ printf(" stride = [%llu, %llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1], (unsigned long long)stride_out[2]);
+ printf(" count = [%llu, %llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1], (unsigned long long)count_out[2]);
+ printf(" block = [%llu, %llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1], (unsigned long long)block_out[2]);
+ }
+ }
+ /* Get source file name */
+ len = H5Pget_virtual_filename (dcpl, (size_t)i, NULL, 0);
+ filename = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_filename (dcpl, (size_t)i, filename, len+1);
+ printf(" Source filename %s\n", filename);
+
+ /* Get source dataset name */
+ len = H5Pget_virtual_dsetname (dcpl, (size_t)i, NULL, 0);
+ dsetname = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_dsetname (dcpl, (size_t)i, dsetname, len+1);
+ printf(" Source dataset name %s\n", dsetname);
+
+ /* Get selection in the source dataset */
+ printf(" Selection in the source dataset \n");
+ src_space = H5Pget_virtual_srcspace (dcpl, (size_t)i);
+ if(H5Sget_select_type(src_space) == H5S_SEL_HYPERSLABS) {
+ if (H5Sis_regular_hyperslab(vspace)) {
+ status = H5Sget_regular_hyperslab (vspace, start_out, stride_out, count_out, block_out);
+ printf(" start = [%d, %d, %d] \n", (int)start_out[0], (int)start_out[1], (int)start_out[2]);
+ printf(" stride = [%d, %d, %d] \n", (int)stride_out[0], (int)stride_out[1], (int)stride_out[2]);
+ printf(" count = [%d, %d, %d] \n", (int)count_out[0], (int)count_out[1], (int)count_out[2]);
+ printf(" block = [%d, %d, %d] \n", (int)block_out[0], (int)block_out[1], (int)block_out[2]);
+ }
+ }
+ H5Sclose(vspace);
+ H5Sclose(src_space);
+ free(filename);
+ free(dsetname);
+ }
+/* EIP read data back */
+
+ /*
+ * Close and release resources.
+ */
+ status = H5Pclose (dcpl);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+ return 0;
+}
+
diff --git a/examples/h5_vds-percival-unlim-maxmin.c b/examples/h5_vds-percival-unlim-maxmin.c
new file mode 100644
index 0000000..a6eecfb
--- /dev/null
+++ b/examples/h5_vds-percival-unlim-maxmin.c
@@ -0,0 +1,309 @@
+/************************************************************
+
+ This example illustrates the concept of the virtual dataset.
+ Percival use case. Every fifth 10x10 plane in VDS is stored in
+ the corresponding 3D unlimited dataset.
+ There are 4 source datasets total.
+ Each of the source datasets is extended to different sizes.
+ VDS access property can be used to get max and min extent.
+ This file is intended for use with HDF5 Library version 1.10
+
+ ************************************************************/
+/* EIP Add link to the picture */
+
+#include "hdf5.h"
+#include <stdio.h>
+#include <stdlib.h>
+
+#define VFILE "vds-percival-unlim-maxmin.h5"
+#define DATASET "VDS-Percival-unlim-maxmin"
+#define VDSDIM0 H5S_UNLIMITED
+#define VDSDIM1 10
+#define VDSDIM2 10
+
+#define DIM0 H5S_UNLIMITED
+#define DIM0_1 4 /* Initial size of the source datasets */
+#define DIM1 10
+#define DIM2 10
+#define RANK 3
+#define PLANE_STRIDE 4
+
+const char *SRC_FILE[] = {
+ "a.h5",
+ "b.h5",
+ "c.h5",
+ "d.h5"
+};
+
+const char *SRC_DATASET[] = {
+ "A",
+ "B",
+ "C",
+ "D"
+};
+
+int
+main (void)
+{
+ hid_t vfile, file, src_space, mem_space, vspace,
+ vdset, dset; /* Handles */
+ hid_t dcpl, dapl;
+ herr_t status;
+ hsize_t vdsdims[3] = {4*DIM0_1, VDSDIM1, VDSDIM2},
+ vdsdims_max[3] = {VDSDIM0, VDSDIM1, VDSDIM2},
+ dims[3] = {DIM0_1, DIM1, DIM2},
+ memdims[3] = {DIM0_1, DIM1, DIM2},
+ extdims[3] = {0, DIM1, DIM2}, /* Dimensions of the extended source datasets */
+ chunk_dims[3] = {DIM0_1, DIM1, DIM2},
+ dims_max[3] = {DIM0, DIM1, DIM2},
+ vdsdims_out[3],
+ vdsdims_max_out[3],
+ start[3], /* Hyperslab parameters */
+ stride[3],
+ count[3],
+ src_count[3],
+ block[3];
+ hsize_t start_out[3], /* Hyperslab parameter out */
+ stride_out[3],
+ count_out[3],
+ block_out[3];
+ int i, j;
+ H5D_layout_t layout; /* Storage layout */
+ size_t num_map; /* Number of mappings */
+ ssize_t len; /* Length of the string; also a return value */
+ char *filename;
+ char *dsetname;
+ int wdata[DIM0_1*DIM1*DIM2];
+
+ /*
+ * Create source files and datasets. This step is optional.
+ */
+ for (i=0; i < PLANE_STRIDE; i++) {
+ /*
+ * Initialize data for i-th source dataset.
+ */
+ for (j = 0; j < DIM0_1*DIM1*DIM2; j++) wdata[j] = i+1;
+
+ /*
+ * Create the source files and datasets. Write data to each dataset and
+ * close all resources.
+ */
+
+ file = H5Fcreate (SRC_FILE[i], H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ src_space = H5Screate_simple (RANK, dims, dims_max);
+ dcpl = H5Pcreate(H5P_DATASET_CREATE);
+ status = H5Pset_chunk (dcpl, RANK, chunk_dims);
+ dset = H5Dcreate2 (file, SRC_DATASET[i], H5T_NATIVE_INT, src_space, H5P_DEFAULT,
+ dcpl, H5P_DEFAULT);
+ status = H5Dwrite (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ wdata);
+ status = H5Sclose (src_space);
+ status = H5Pclose (dcpl);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+ }
+
+ vfile = H5Fcreate (VFILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create VDS dataspace. */
+ vspace = H5Screate_simple (RANK, vdsdims, vdsdims_max);
+
+ /* Create dataspaces for the source dataset. */
+ src_space = H5Screate_simple (RANK, dims, dims_max);
+
+ /* Create VDS creation property */
+ dcpl = H5Pcreate (H5P_DATASET_CREATE);
+
+ /* Initialize hyperslab values */
+
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ stride[0] = PLANE_STRIDE; /* we will select every fifth plane in VDS */
+ stride[1] = 1;
+ stride[2] = 1;
+ count[0] = H5S_UNLIMITED;
+ count[1] = 1;
+ count[2] = 1;
+ src_count[0] = H5S_UNLIMITED;
+ src_count[1] = 1;
+ src_count[2] = 1;
+ block[0] = 1;
+ block[1] = DIM1;
+ block[2] = DIM2;
+
+ /*
+ * Build the mappings
+ *
+ */
+ status = H5Sselect_hyperslab (src_space, H5S_SELECT_SET, start, NULL, src_count, block);
+ for (i=0; i < PLANE_STRIDE; i++) {
+ status = H5Sselect_hyperslab (vspace, H5S_SELECT_SET, start, stride, count, block);
+ status = H5Pset_virtual (dcpl, vspace, SRC_FILE[i], SRC_DATASET[i], src_space);
+ start[0]++;
+ }
+
+ H5Sselect_none(vspace);
+
+ /* Create a virtual dataset */
+ vdset = H5Dcreate2 (vfile, DATASET, H5T_NATIVE_INT, vspace, H5P_DEFAULT,
+ dcpl, H5P_DEFAULT);
+ status = H5Sclose (vspace);
+ status = H5Sclose (src_space);
+ status = H5Pclose (dcpl);
+
+ /* Let's add data to the source datasets and check new dimensions for VDS */
+ /* We will add only one plane to the first source dataset, two planes to the
+ second one, three to the third, and four to the forth. */
+
+ for (i=0; i < PLANE_STRIDE; i++) {
+ /*
+ * Initialize data for i-th source dataset.
+ */
+ for (j = 0; j < (i+1)*DIM1*DIM2; j++) wdata[j] = 10*(i+1);
+
+ /*
+ * Open the source files and datasets. Appen data to each dataset and
+ * close all resources.
+ */
+
+ file = H5Fopen (SRC_FILE[i], H5F_ACC_RDWR, H5P_DEFAULT);
+ dset = H5Dopen2 (file, SRC_DATASET[i], H5P_DEFAULT);
+ extdims[0] = DIM0_1+i+1;
+ status = H5Dset_extent (dset, extdims);
+ src_space = H5Dget_space (dset);
+ start[0] = DIM0_1;
+ start[1] = 0;
+ start[2] = 0;
+ count[0] = 1;
+ count[1] = 1;
+ count[2] = 1;
+ block[0] = i+1;
+ block[1] = DIM1;
+ block[2] = DIM2;
+
+ memdims[0] = i+1;
+ mem_space = H5Screate_simple(RANK, memdims, NULL);
+ status = H5Sselect_hyperslab (src_space, H5S_SELECT_SET, start, NULL, count, block);
+ status = H5Dwrite (dset, H5T_NATIVE_INT, mem_space, src_space, H5P_DEFAULT,
+ wdata);
+ status = H5Sclose (src_space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+ }
+
+ status = H5Dclose (vdset);
+ status = H5Fclose (vfile);
+
+ /*
+ * Now we begin the read section of this example.
+ */
+
+ /*
+ * Open file and dataset using the default properties.
+ */
+ vfile = H5Fopen (VFILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+
+ /*
+ * Open VDS using different access properties to use max or
+ * min extents depending on the sizes of the underlying datasets
+ */
+ dapl = H5Pcreate (H5P_DATASET_ACCESS);
+
+ for(i = 0; i < 2; i++) {
+ status = H5Pset_virtual_view (dapl, i ? H5D_VDS_LAST_AVAILABLE : H5D_VDS_FIRST_MISSING);
+ vdset = H5Dopen2 (vfile, DATASET, dapl);
+
+ /* Let's get space of the VDS and its dimension; we should get 32(or 20)x10x10 */
+ vspace = H5Dget_space (vdset);
+ H5Sget_simple_extent_dims (vspace, vdsdims_out, vdsdims_max_out);
+ printf ("VDS dimensions, bounds = H5D_VDS_%s: ", i ? "LAST_AVAILABLE" : "FIRST_MISSING");
+ for (j=0; j<RANK; j++)
+ printf (" %d ", (int)vdsdims_out[j]);
+ printf ("\n");
+
+ /* Close */
+ status = H5Dclose (vdset);
+ status = H5Sclose (vspace);
+ }
+
+ status = H5Pclose (dapl);
+
+ vdset = H5Dopen2 (vfile, DATASET, H5P_DEFAULT);
+
+ /*
+ * Get creation property list and mapping properties.
+ */
+ dcpl = H5Dget_create_plist (vdset);
+
+ /*
+ * Get storage layout.
+ */
+ layout = H5Pget_layout (dcpl);
+
+ if (H5D_VIRTUAL == layout)
+ printf(" Dataset has a virtual layout \n");
+ else
+ printf(" Wrong layout found \n");
+
+ /*
+ * Find number of mappings.
+ */
+ status = H5Pget_virtual_count (dcpl, &num_map);
+ printf(" Number of mappings is %lu\n", (unsigned long)num_map);
+
+ /*
+ * Get mapping parameters for each mapping.
+ */
+ for (i = 0; i < (int)num_map; i++) {
+ printf(" Mapping %d \n", i);
+ printf(" Selection in the virtual dataset \n");
+ /* Get selection in the virttual dataset */
+ vspace = H5Pget_virtual_vspace (dcpl, (size_t)i);
+ if (H5Sget_select_type(vspace) == H5S_SEL_HYPERSLABS) {
+ if (H5Sis_regular_hyperslab(vspace)) {
+ status = H5Sget_regular_hyperslab (vspace, start_out, stride_out, count_out, block_out);
+ printf(" start = [%llu, %llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1], (unsigned long long)start_out[2]);
+ printf(" stride = [%llu, %llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1], (unsigned long long)stride_out[2]);
+ printf(" count = [%llu, %llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1], (unsigned long long)count_out[2]);
+ printf(" block = [%llu, %llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1], (unsigned long long)block_out[2]);
+ }
+ }
+ /* Get source file name */
+ len = H5Pget_virtual_filename (dcpl, (size_t)i, NULL, 0);
+ filename = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_filename (dcpl, (size_t)i, filename, len+1);
+ printf(" Source filename %s\n", filename);
+
+ /* Get source dataset name */
+ len = H5Pget_virtual_dsetname (dcpl, (size_t)i, NULL, 0);
+ dsetname = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_dsetname (dcpl, (size_t)i, dsetname, len+1);
+ printf(" Source dataset name %s\n", dsetname);
+
+ /* Get selection in the source dataset */
+ printf(" Selection in the source dataset \n");
+ src_space = H5Pget_virtual_srcspace (dcpl, (size_t)i);
+ if (H5Sget_select_type(src_space) == H5S_SEL_HYPERSLABS) {
+ if (H5Sis_regular_hyperslab(src_space)) {
+ status = H5Sget_regular_hyperslab (src_space, start_out, stride_out, count_out, block_out);
+ printf(" start = [%llu, %llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1], (unsigned long long)start_out[2]);
+ printf(" stride = [%llu, %llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1], (unsigned long long)stride_out[2]);
+ printf(" count = [%llu, %llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1], (unsigned long long)count_out[2]);
+ printf(" block = [%llu, %llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1], (unsigned long long)block_out[2]);
+ }
+ }
+ H5Sclose(vspace);
+ H5Sclose(src_space);
+ free(filename);
+ free(dsetname);
+ }
+ /*
+ * Close and release resources.
+ */
+ status = H5Pclose (dcpl);
+ status = H5Dclose (vdset);
+ status = H5Fclose (vfile);
+ return 0;
+}
+
diff --git a/examples/h5_vds-percival-unlim.c b/examples/h5_vds-percival-unlim.c
new file mode 100644
index 0000000..b5f3ebd
--- /dev/null
+++ b/examples/h5_vds-percival-unlim.c
@@ -0,0 +1,352 @@
+/************************************************************
+
+ This example illustrates the concept of the virtual dataset.
+ Percival use case. Every fifth 10x10 plane in VDS is stored in
+ the corresponding 3D unlimited dataset.
+ There are 4 source datasets total.
+ This file is intended for use with HDF5 Library version 1.10
+
+ ************************************************************/
+/* EIP Add link to the picture */
+
+#include "hdf5.h"
+#include <stdio.h>
+#include <stdlib.h>
+
+#define VFILE "vds-percival-unlim.h5"
+#define DATASET "VDS-Percival-unlim"
+#define VDSDIM0 H5S_UNLIMITED
+#define VDSDIM1 10
+#define VDSDIM2 10
+
+#define DIM0 H5S_UNLIMITED
+#define DIM0_1 10 /* Initial size of the datasets */
+#define DIM1 10
+#define DIM2 10
+#define RANK 3
+#define PLANE_STRIDE 4
+
+const char *SRC_FILE[] = {
+ "a.h5",
+ "b.h5",
+ "c.h5",
+ "d.h5"
+};
+
+const char *SRC_DATASET[] = {
+ "A",
+ "B",
+ "C",
+ "D"
+};
+
+int
+main (void)
+{
+ hid_t vfile, file, src_space, mem_space, vspace,
+ vdset, dset; /* Handles */
+ hid_t dcpl;
+ herr_t status;
+ hsize_t vdsdims[3] = {4*DIM0_1, VDSDIM1, VDSDIM2},
+ vdsdims_max[3] = {VDSDIM0, VDSDIM1, VDSDIM2},
+ dims[3] = {DIM0_1, DIM1, DIM2},
+ extdims[3] = {2*DIM0_1, DIM1, DIM2},
+ chunk_dims[3] = {DIM0_1, DIM1, DIM2},
+ dims_max[3] = {DIM0, DIM1, DIM2},
+ vdsdims_out[3],
+ vdsdims_max_out[3],
+ start[3], /* Hyperslab parameters */
+ stride[3],
+ count[3],
+ src_count[3],
+ block[3];
+ hsize_t start_out[3], /* Hyperslab parameter out */
+ stride_out[3],
+ count_out[3],
+ block_out[3];
+ int i, j, k;
+ H5D_layout_t layout; /* Storage layout */
+ size_t num_map; /* Number of mappings */
+ ssize_t len; /* Length of the string; also a return value */
+ char *filename;
+ char *dsetname;
+ int wdata[DIM0_1*DIM1*DIM2];
+ int rdata[80][10][10];
+ int a_rdata[20][10][10];
+
+ /*
+ * Create source files and datasets. This step is optional.
+ */
+ for (i=0; i < PLANE_STRIDE; i++) {
+ /*
+ * Initialize data for i-th source dataset.
+ */
+ for (j = 0; j < DIM0_1*DIM1*DIM2; j++) wdata[j] = i+1;
+
+ /*
+ * Create the source files and datasets. Write data to each dataset and
+ * close all resources.
+ */
+
+ file = H5Fcreate (SRC_FILE[i], H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ src_space = H5Screate_simple (RANK, dims, dims_max);
+ dcpl = H5Pcreate(H5P_DATASET_CREATE);
+ status = H5Pset_chunk (dcpl, RANK, chunk_dims);
+ dset = H5Dcreate2 (file, SRC_DATASET[i], H5T_NATIVE_INT, src_space, H5P_DEFAULT,
+ dcpl, H5P_DEFAULT);
+ status = H5Dwrite (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ wdata);
+ status = H5Sclose (src_space);
+ status = H5Pclose (dcpl);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+ }
+
+ vfile = H5Fcreate (VFILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create VDS dataspace. */
+ vspace = H5Screate_simple (RANK, vdsdims, vdsdims_max);
+
+ /* Create dataspaces for the source dataset. */
+ src_space = H5Screate_simple (RANK, dims, dims_max);
+
+ /* Create VDS creation property */
+ dcpl = H5Pcreate (H5P_DATASET_CREATE);
+
+ /* Initialize hyperslab values */
+
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ stride[0] = PLANE_STRIDE; /* we will select every fifth plane in VDS */
+ stride[1] = 1;
+ stride[2] = 1;
+ count[0] = H5S_UNLIMITED;
+ count[1] = 1;
+ count[2] = 1;
+ src_count[0] = H5S_UNLIMITED;
+ src_count[1] = 1;
+ src_count[2] = 1;
+ block[0] = 1;
+ block[1] = DIM1;
+ block[2] = DIM2;
+
+ /*
+ * Build the mappings
+ *
+ */
+ status = H5Sselect_hyperslab (src_space, H5S_SELECT_SET, start, NULL, src_count, block);
+ for (i=0; i < PLANE_STRIDE; i++) {
+ status = H5Sselect_hyperslab (vspace, H5S_SELECT_SET, start, stride, count, block);
+ status = H5Pset_virtual (dcpl, vspace, SRC_FILE[i], SRC_DATASET[i], src_space);
+ start[0]++;
+ }
+
+ H5Sselect_none(vspace);
+
+ /* Create a virtual dataset */
+ vdset = H5Dcreate2 (vfile, DATASET, H5T_NATIVE_INT, vspace, H5P_DEFAULT,
+ dcpl, H5P_DEFAULT);
+ status = H5Sclose (vspace);
+ status = H5Sclose (src_space);
+ status = H5Pclose (dcpl);
+ /* Let's get space of the VDS and its dimension; we should get 40x10x10 */
+ vspace = H5Dget_space (vdset);
+ H5Sget_simple_extent_dims (vspace, vdsdims_out, vdsdims_max_out);
+ printf ("VDS dimensions first time \n");
+ printf (" Current: ");
+ for (i=0; i<RANK; i++)
+ printf (" %d ", (int)vdsdims_out[i]);
+ printf ("\n");
+
+ /* Let's add data to the source datasets and check new dimensions for VDS */
+
+ for (i=0; i < PLANE_STRIDE; i++) {
+ /*
+ * Initialize data for i-th source dataset.
+ */
+ for (j = 0; j < DIM0_1*DIM1*DIM2; j++) wdata[j] = 10*(i+1);
+
+ /*
+ * Create the source files and datasets. Write data to each dataset and
+ * close all resources.
+ */
+
+ file = H5Fopen (SRC_FILE[i], H5F_ACC_RDWR, H5P_DEFAULT);
+ dset = H5Dopen2 (file, SRC_DATASET[i], H5P_DEFAULT);
+ status = H5Dset_extent (dset, extdims);
+ src_space = H5Dget_space (dset);
+ start[0] = DIM0_1;
+ start[1] = 0;
+ start[2] = 0;
+ count[0] = 1;
+ count[1] = 1;
+ count[2] = 1;
+ block[0] = DIM0_1;
+ block[1] = DIM1;
+ block[2] = DIM2;
+
+ mem_space = H5Screate_simple(RANK, dims, NULL);
+ status = H5Sselect_hyperslab (src_space, H5S_SELECT_SET, start, NULL, count, block);
+ status = H5Dwrite (dset, H5T_NATIVE_INT, mem_space, src_space, H5P_DEFAULT,
+ wdata);
+ status = H5Sclose (src_space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+ }
+
+ status = H5Dclose (vdset);
+ status = H5Fclose (vfile);
+
+ /*
+ * Now we begin the read section of this example.
+ */
+
+ /*
+ * Open file and dataset using the default properties.
+ */
+ vfile = H5Fopen (VFILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+ vdset = H5Dopen2 (vfile, DATASET, H5P_DEFAULT);
+
+ /*
+ * Get creation property list and mapping properties.
+ */
+ dcpl = H5Dget_create_plist (vdset);
+
+ /*
+ * Get storage layout.
+ */
+ layout = H5Pget_layout (dcpl);
+
+ if (H5D_VIRTUAL == layout)
+ printf(" Dataset has a virtual layout \n");
+ else
+ printf(" Wrong layout found \n");
+
+ /*
+ * Find number of mappings.
+ */
+ status = H5Pget_virtual_count (dcpl, &num_map);
+ printf(" Number of mappings is %lu\n", (unsigned long)num_map);
+
+ /*
+ * Get mapping parameters for each mapping.
+ */
+ for (i = 0; i < (int)num_map; i++) {
+ printf(" Mapping %d \n", i);
+ printf(" Selection in the virtual dataset \n");
+ /* Get selection in the virttual dataset */
+ vspace = H5Pget_virtual_vspace (dcpl, (size_t)i);
+ if (H5Sget_select_type(vspace) == H5S_SEL_HYPERSLABS) {
+ if (H5Sis_regular_hyperslab(vspace)) {
+ status = H5Sget_regular_hyperslab (vspace, start_out, stride_out, count_out, block_out);
+ printf(" start = [%llu, %llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1], (unsigned long long)start_out[2]);
+ printf(" stride = [%llu, %llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1], (unsigned long long)stride_out[2]);
+ printf(" count = [%llu, %llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1], (unsigned long long)count_out[2]);
+ printf(" block = [%llu, %llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1], (unsigned long long)block_out[2]);
+ }
+ }
+ /* Get source file name */
+ len = H5Pget_virtual_filename (dcpl, (size_t)i, NULL, 0);
+ filename = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_filename (dcpl, (size_t)i, filename, len+1);
+ printf(" Source filename %s\n", filename);
+
+ /* Get source dataset name */
+ len = H5Pget_virtual_dsetname (dcpl, (size_t)i, NULL, 0);
+ dsetname = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_dsetname (dcpl, (size_t)i, dsetname, len+1);
+ printf(" Source dataset name %s\n", dsetname);
+
+ /* Get selection in the source dataset */
+ printf(" Selection in the source dataset \n");
+ src_space = H5Pget_virtual_srcspace (dcpl, (size_t)i);
+ if (H5Sget_select_type(src_space) == H5S_SEL_HYPERSLABS) {
+ if (H5Sis_regular_hyperslab(src_space)) {
+ status = H5Sget_regular_hyperslab (src_space, start_out, stride_out, count_out, block_out);
+ printf(" start = [%llu, %llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1], (unsigned long long)start_out[2]);
+ printf(" stride = [%llu, %llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1], (unsigned long long)stride_out[2]);
+ printf(" count = [%llu, %llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1], (unsigned long long)count_out[2]);
+ printf(" block = [%llu, %llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1], (unsigned long long)block_out[2]);
+ }
+ }
+ H5Sclose(vspace);
+ H5Sclose(src_space);
+ free(filename);
+ free(dsetname);
+ }
+ /*
+ * Read data from VDS.
+ */
+ vspace = H5Dget_space (vdset);
+ H5Sget_simple_extent_dims (vspace, vdsdims_out, vdsdims_max_out);
+ printf ("VDS dimensions second time \n");
+ printf (" Current: ");
+ for (i=0; i<RANK; i++)
+ printf (" %d ", (int)vdsdims_out[i]);
+ printf ("\n");
+
+ /* Read all VDS data */
+
+ //EIP We should be able to do it by using H5S_ALL instead of making selection
+ // or using H5Sselect_all from vspace.
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ count[0] = 1;
+ count[1] = 1;
+ count[2] = 1;
+ block[0] = vdsdims_out[0];
+ block[1] = vdsdims_out[1];
+ block[2] = vdsdims_out[2];
+
+ status = H5Sselect_hyperslab (vspace, H5S_SELECT_SET, start, NULL, count, block);
+ mem_space = H5Screate_simple(RANK, vdsdims_out, NULL);
+ status = H5Dread (vdset, H5T_NATIVE_INT, mem_space, vspace, H5P_DEFAULT,
+ rdata);
+ printf (" All data: \n");
+ for (i=0; i < (int)vdsdims_out[0]; i++) {
+ for (j=0; j < (int)vdsdims_out[1]; j++) {
+ printf ("(%d, %d, 0)", i, j);
+ for (k=0; k < (int)vdsdims_out[2]; k++)
+ printf (" %d ", rdata[i][j][k]);
+ printf ("\n");
+ }
+ }
+ /* Read VDS, but only data mapeed to dataset a.h5 */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ stride[0] = PLANE_STRIDE;
+ stride[1] = 1;
+ stride[2] = 1;
+ count[0] = 2*DIM0_1;
+ count[1] = 1;
+ count[2] = 1;
+ block[0] = 1;
+ block[1] = vdsdims_out[1];
+ block[2] = vdsdims_out[2];
+ dims[0] = 2*DIM0_1;
+ status = H5Sselect_hyperslab (vspace, H5S_SELECT_SET, start, stride, count, block);
+ mem_space = H5Screate_simple(RANK, dims, NULL);
+ status = H5Dread (vdset, H5T_NATIVE_INT, mem_space, vspace, H5P_DEFAULT,
+ a_rdata);
+ printf (" All data: \n");
+ for (i=0; i < 2*DIM0_1; i++) {
+ for (j=0; j < (int)vdsdims_out[1]; j++) {
+ printf ("(%d, %d, 0)", i, j);
+ for (k=0; k < (int)vdsdims_out[2]; k++)
+ printf (" %d ", a_rdata[i][j][k]);
+ printf ("\n");
+ }
+ }
+ /*
+ * Close and release resources.
+ */
+ status = H5Sclose(mem_space);
+ status = H5Pclose (dcpl);
+ status = H5Dclose (vdset);
+ status = H5Fclose (vfile);
+ return 0;
+}
+
diff --git a/examples/h5_vds-percival.c b/examples/h5_vds-percival.c
new file mode 100644
index 0000000..757bb69
--- /dev/null
+++ b/examples/h5_vds-percival.c
@@ -0,0 +1,242 @@
+/************************************************************
+
+ This example illustrates the concept of the virtual dataset.
+ Percival use case. Every fifth 10x10 plane in VDS is stored in
+ the corresponding 3D unlimited dataset.
+ EIP: For now we will use finite dimension.
+ There are 4 source datasets total.
+ This file is intended for use with HDF5 Library version 1.10
+
+ ************************************************************/
+/* EIP Add link to the picture */
+
+#include "hdf5.h"
+#include <stdio.h>
+#include <stdlib.h>
+
+#define FILE "vds-percival.h5"
+#define DATASET "VDS-Percival"
+/* later
+#define VDSDIM0 H5S_UNLIMITED
+*/
+#define VDSDIM0 40
+#define VDSDIM1 10
+#define VDSDIM2 10
+/* later
+#define DIM0 H5S_UNLIMITED
+*/
+#define DIM0 10
+#define DIM1 10
+#define DIM2 10
+#define RANK 3
+#define PLANE_STRIDE 4
+
+const char *SRC_FILE[] = {
+ "a.h5",
+ "b.h5",
+ "c.h5",
+ "d.h5"
+};
+
+const char *SRC_DATASET[] = {
+ "A",
+ "B",
+ "C",
+ "D"
+};
+
+int
+main (void)
+{
+ hid_t file, src_space, vspace,
+ dset; /* Handles */
+ hid_t dcpl;
+ herr_t status;
+ hsize_t vdsdims[3] = {VDSDIM0, VDSDIM1, VDSDIM2},
+ vdsdims_max[3] = {VDSDIM0, VDSDIM1, VDSDIM2},
+ dims[3] = {DIM0, DIM1, DIM2},
+ dims_max[3] = {DIM0, DIM1, DIM2},
+ start[3], /* Hyperslab start parameter for VDS */
+ stride[3],
+ count[3],
+ src_count[3],
+ block[3];
+ hsize_t start_out[3], /* Hyperslab parameter out */
+ stride_out[3],
+ count_out[3],
+ block_out[3];
+ int i, j;
+ H5D_layout_t layout; /* Storage layout */
+ size_t num_map; /* Number of mappings */
+ ssize_t len; /* Length of the string; also a return value */
+ char *filename;
+ char *dsetname;
+ int wdata[DIM0*DIM1*DIM2];
+
+ /*
+ * Create source files and datasets. This step is optional.
+ */
+ for (i=0; i < PLANE_STRIDE; i++) {
+ /*
+ * Initialize data for i-th source dataset.
+ */
+ for (j = 0; j < DIM0*DIM1*DIM2; j++) wdata[j] = i+1;
+
+ /*
+ * Create the source files and datasets. Write data to each dataset and
+ * close all resources.
+ */
+
+ file = H5Fcreate (SRC_FILE[i], H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ src_space = H5Screate_simple (RANK, dims, NULL);
+ dset = H5Dcreate2 (file, SRC_DATASET[i], H5T_NATIVE_INT, src_space, H5P_DEFAULT,
+ H5P_DEFAULT, H5P_DEFAULT);
+ status = H5Dwrite (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ wdata);
+ status = H5Sclose (src_space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+ }
+
+ file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create VDS dataspace. */
+ vspace = H5Screate_simple (RANK, vdsdims, vdsdims_max);
+
+ /* Create dataspaces for the source dataset. */
+ src_space = H5Screate_simple (RANK, dims, dims_max);
+
+ /* Create VDS creation property */
+ dcpl = H5Pcreate (H5P_DATASET_CREATE);
+
+ /* Initialize hyperslab values */
+
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ stride[0] = PLANE_STRIDE; /* we will select every fifth plane in VDS */
+ stride[1] = 1;
+ stride[2] = 1;
+/* later
+ count[0] = H5S_UNLIMITED;
+*/
+ count[0] = VDSDIM0/4;
+ count[1] = 1;
+ count[2] = 1;
+/* later
+ src_count[0] = H5S_UNLIMITED;
+*/
+ src_count[0] = DIM0;
+ src_count[1] = 1;
+ src_count[2] = 1;
+ block[0] = 1;
+ block[1] = DIM1;
+ block[2] = DIM2;
+
+ /*
+ * Build the mappings
+ *
+ */
+ status = H5Sselect_hyperslab (src_space, H5S_SELECT_SET, start, NULL, src_count, block);
+ for (i=0; i < PLANE_STRIDE; i++) {
+ status = H5Sselect_hyperslab (vspace, H5S_SELECT_SET, start, stride, count, block);
+ status = H5Pset_virtual (dcpl, vspace, SRC_FILE[i], SRC_DATASET[i], src_space);
+ start[0]++;
+ }
+
+ H5Sselect_none(vspace);
+
+ /* Create a virtual dataset */
+ dset = H5Dcreate2 (file, DATASET, H5T_NATIVE_INT, vspace, H5P_DEFAULT,
+ dcpl, H5P_DEFAULT);
+ status = H5Sclose (vspace);
+ status = H5Sclose (src_space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+ /*
+ * Now we begin the read section of this example.
+ */
+
+ /*
+ * Open file and dataset using the default properties.
+ */
+ file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dset = H5Dopen2 (file, DATASET, H5P_DEFAULT);
+
+ /*
+ * Get creation property list and mapping properties.
+ */
+ dcpl = H5Dget_create_plist (dset);
+
+ /*
+ * Get storage layout.
+ */
+ layout = H5Pget_layout (dcpl);
+
+ if (H5D_VIRTUAL == layout)
+ printf(" Dataset has a virtual layout \n");
+ else
+ printf(" Wrong layout found \n");
+
+ /*
+ * Find number of mappings.
+ */
+ status = H5Pget_virtual_count (dcpl, &num_map);
+ printf(" Number of mappings is %lu\n", (unsigned long)num_map);
+
+ /*
+ * Get mapping parameters for each mapping.
+ */
+ for (i = 0; i < (int)num_map; i++) {
+ printf(" Mapping %d \n", i);
+ printf(" Selection in the virtual dataset \n");
+ /* Get selection in the virttual dataset */
+ vspace = H5Pget_virtual_vspace (dcpl, (size_t)i);
+ if (H5Sget_select_type(vspace) == H5S_SEL_HYPERSLABS) {
+ if (H5Sis_regular_hyperslab(vspace)) {
+ status = H5Sget_regular_hyperslab (vspace, start_out, stride_out, count_out, block_out);
+ printf(" start = [%llu, %llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1], (unsigned long long)start_out[2]);
+ printf(" stride = [%llu, %llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1], (unsigned long long)stride_out[2]);
+ printf(" count = [%llu, %llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1], (unsigned long long)count_out[2]);
+ printf(" block = [%llu, %llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1], (unsigned long long)block_out[2]);
+ }
+ }
+ /* Get source file name */
+ len = H5Pget_virtual_filename (dcpl, (size_t)i, NULL, 0);
+ filename = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_filename (dcpl, (size_t)i, filename, len+1);
+ printf(" Source filename %s\n", filename);
+
+ /* Get source dataset name */
+ len = H5Pget_virtual_dsetname (dcpl, (size_t)i, NULL, 0);
+ dsetname = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_dsetname (dcpl, (size_t)i, dsetname, len+1);
+ printf(" Source dataset name %s\n", dsetname);
+
+ /* Get selection in the source dataset */
+ printf(" Selection in the source dataset \n");
+ src_space = H5Pget_virtual_srcspace (dcpl, (size_t)i);
+ if (H5Sget_select_type(src_space) == H5S_SEL_HYPERSLABS) {
+ if (H5Sis_regular_hyperslab(src_space)) {
+ status = H5Sget_regular_hyperslab (src_space, start_out, stride_out, count_out, block_out);
+ printf(" start = [%llu, %llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1], (unsigned long long)start_out[2]);
+ printf(" stride = [%llu, %llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1], (unsigned long long)stride_out[2]);
+ printf(" count = [%llu, %llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1], (unsigned long long)count_out[2]);
+ printf(" block = [%llu, %llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1], (unsigned long long)block_out[2]);
+ }
+ }
+ H5Sclose(vspace);
+ H5Sclose(src_space);
+ free(filename);
+ free(dsetname);
+ }
+ /*
+ * Close and release resources.
+ */
+ status = H5Pclose (dcpl);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+ return 0;
+}
+
diff --git a/examples/h5_vds-simpleIO.c b/examples/h5_vds-simpleIO.c
new file mode 100644
index 0000000..b707ae4
--- /dev/null
+++ b/examples/h5_vds-simpleIO.c
@@ -0,0 +1,184 @@
+/************************************************************
+
+ This example illustrates the concept of virtual dataset I/O
+ The program creates 2-dim source dataset and writes
+ data to it. Then it creates 2-dim virtual dataset that has
+ the same dimesnion sizes and maps the all elements of the
+ virtual dataset to all elements of the source dataset.
+ Then VDS is read back.
+
+ This file is intended for use with HDF5 Library version 1.10
+
+ ************************************************************/
+/* EIP Add link to the picture */
+
+#include "hdf5.h"
+#include <stdio.h>
+#include <stdlib.h>
+
+#define FILE "vds-simpleIO.h5"
+#define DATASET "VDS"
+#define DIM1 6
+#define DIM0 4
+#define RANK 2
+
+#define SRC_FILE "a.h5"
+#define SRC_DATASET "/A"
+
+
+int
+main (void)
+{
+ hid_t file, space, src_space, vspace, dset; /* Handles */
+ hid_t dcpl;
+ herr_t status;
+ hsize_t vdsdims[2] = {DIM0, DIM1}, /* Virtual dataset dimension */
+ dims[2] = {DIM0, DIM1}; /* Source dataset dimensions */
+ int wdata[DIM0][DIM1], /* Write buffer for source dataset */
+ rdata[DIM0][DIM1], /* Read buffer for virtual dataset */
+ i, j;
+ H5D_layout_t layout; /* Storage layout */
+ size_t num_map; /* Number of mappings */
+ ssize_t len; /* Length of the string; also a return value */
+ char *filename;
+ char *dsetname;
+ /*
+ * Initialize data.
+ */
+ for (i = 0; i < DIM0; i++)
+ for (j = 0; j < DIM1; j++) wdata[i][j] = i+1;
+
+ /*
+ * Create the source file and the dataset. Write data to the source dataset
+ * and close all resources.
+ */
+
+ file = H5Fcreate (SRC_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ space = H5Screate_simple (RANK, dims, NULL);
+ dset = H5Dcreate2 (file, SRC_DATASET, H5T_NATIVE_INT, space, H5P_DEFAULT,
+ H5P_DEFAULT, H5P_DEFAULT);
+ status = H5Dwrite (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ wdata[0]);
+ status = H5Sclose (space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+ /* Create file in which virtual dataset will be stored. */
+ file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create VDS dataspace. */
+ vspace = H5Screate_simple (RANK, vdsdims, NULL);
+
+ /* Set VDS creation property. */
+ dcpl = H5Pcreate (H5P_DATASET_CREATE);
+
+ /*
+ * Build the mappings.
+ * Selections in the source datasets are H5S_ALL.
+ * In the virtual dataset we select the first, the second and the third rows
+ * and map each row to the data in the corresponding source dataset.
+ */
+ src_space = H5Screate_simple (RANK, dims, NULL);
+ status = H5Pset_virtual (dcpl, vspace, SRC_FILE, SRC_DATASET, src_space);
+
+ /* Create a virtual dataset. */
+ dset = H5Dcreate2 (file, DATASET, H5T_NATIVE_INT, vspace, H5P_DEFAULT,
+ dcpl, H5P_DEFAULT);
+ status = H5Sclose (vspace);
+ status = H5Sclose (src_space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+ /*
+ * Now we begin the read section of this example.
+ */
+
+ /*
+ * Open the file and virtual dataset.
+ */
+ file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dset = H5Dopen2 (file, DATASET, H5P_DEFAULT);
+ /*
+ * Get creation property list and mapping properties.
+ */
+ dcpl = H5Dget_create_plist (dset);
+
+ /*
+ * Get storage layout.
+ */
+ layout = H5Pget_layout (dcpl);
+ if (H5D_VIRTUAL == layout)
+ printf(" Dataset has a virtual layout \n");
+ else
+ printf(" Wrong layout found \n");
+
+ /*
+ * Find the number of mappings.
+ */
+ status = H5Pget_virtual_count (dcpl, &num_map);
+ printf(" Number of mappings is %lu\n", (unsigned long)num_map);
+
+ /*
+ * Get mapping parameters for each mapping.
+ */
+ for (i = 0; i < (int)num_map; i++) {
+ printf(" Mapping %d \n", i);
+ printf(" Selection in the virtual dataset ");
+ /* Get selection in the virttual dataset */
+ vspace = H5Pget_virtual_vspace (dcpl, (size_t)i);
+
+ /* Make sure it is ALL selection and then print selection. */
+ if(H5Sget_select_type(vspace) == H5S_SEL_ALL) {
+ printf("Selection is H5S_ALL \n");
+ }
+ /* Get source file name. */
+ len = H5Pget_virtual_filename (dcpl, (size_t)i, NULL, 0);
+ filename = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_filename (dcpl, (size_t)i, filename, len+1);
+ printf(" Source filename %s\n", filename);
+
+ /* Get source dataset name. */
+ len = H5Pget_virtual_dsetname (dcpl, (size_t)i, NULL, 0);
+ dsetname = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_dsetname (dcpl, (size_t)i, dsetname, len+1);
+ printf(" Source dataset name %s\n", dsetname);
+
+ /* Get selection in the source dataset. */
+ printf(" Selection in the source dataset ");
+ src_space = H5Pget_virtual_srcspace (dcpl, (size_t)i);
+
+ /* Make sure it is ALL selection and then print selection. */
+ if(H5Sget_select_type(src_space) == H5S_SEL_ALL) {
+ printf("Selection is H5S_ALL \n");
+ }
+ H5Sclose(vspace);
+ H5Sclose(src_space);
+ free(filename);
+ free(dsetname);
+ }
+ /*
+ * Read the data using the default properties.
+ */
+ status = H5Dread (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ rdata[0]);
+
+ /*
+ * Output the data to the screen.
+ */
+ printf (" VDS Data:\n");
+ for (i=0; i<DIM0; i++) {
+ printf (" [");
+ for (j=0; j<DIM1; j++)
+ printf (" %3d", rdata[i][j]);
+ printf ("]\n");
+ }
+ /*
+ * Close and release resources.
+ */
+ status = H5Pclose (dcpl);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+ return 0;
+}
+
diff --git a/examples/h5_vds.c b/examples/h5_vds.c
new file mode 100644
index 0000000..1e502c6
--- /dev/null
+++ b/examples/h5_vds.c
@@ -0,0 +1,267 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/************************************************************
+
+ This example illustrates the concept of virtual dataset.
+ The program creates three 1-dim source datasets and writes
+ data to them. Then it creates a 2-dim virtual dataset and
+ maps the first three rows of the virtual dataset to the data
+ in the source datasets. Elements of a row are mapped to all
+ elements of the corresponding source dataset.
+ The fourth row is not mapped and will be filled with the fill
+ values when virtual dataset is read back.
+
+ The program closes all datasets, and then reopens the virtual
+ dataset, and finds and prints its creation properties.
+ Then it reads the values.
+
+ This file is intended for use with HDF5 Library version 1.10
+
+ ************************************************************/
+/* EIP Add link to the picture */
+
+#include "hdf5.h"
+#include <stdio.h>
+#include <stdlib.h>
+
+#define FILE "vds.h5"
+#define DATASET "VDS"
+#define VDSDIM1 6
+#define VDSDIM0 4
+#define DIM0 6
+#define RANK1 1
+#define RANK2 2
+
+const char *SRC_FILE[] = {
+ "a.h5",
+ "b.h5",
+ "c.h5"
+};
+
+const char *SRC_DATASET[] = {
+ "A",
+ "B",
+ "C"
+};
+
+int
+main (void)
+{
+ hid_t file, space, src_space, vspace, dset; /* Handles */
+ hid_t dcpl;
+ herr_t status;
+ hsize_t vdsdims[2] = {VDSDIM0, VDSDIM1}, /* Virtual datasets dimension */
+ dims[1] = {DIM0}, /* Source datasets dimensions */
+ start[2], /* Hyperslab parameters */
+ stride[2],
+ count[2],
+ block[2];
+ hsize_t start_out[2],
+ stride_out[2],
+ count_out[2],
+ block_out[2];
+ int wdata[DIM0], /* Write buffer for source dataset */
+ rdata[VDSDIM0][VDSDIM1], /* Read buffer for virtual dataset */
+ i, j, k, l;
+ int fill_value = -1; /* Fill value for VDS */
+ H5D_layout_t layout; /* Storage layout */
+ size_t num_map; /* Number of mappings */
+ ssize_t len; /* Length of the string; also a return value */
+ char *filename;
+ char *dsetname;
+ hsize_t nblocks;
+ hsize_t *buf; /* Buffer to hold hyperslab coordinates */
+
+ /*
+ * Create source files and datasets. This step is optional.
+ */
+ for (i=0; i < 3; i++) {
+ /*
+ * Initialize data for i-th source dataset.
+ */
+ for (j = 0; j < DIM0; j++) wdata[j] = i+1;
+
+ /*
+ * Create the source files and datasets. Write data to each dataset and
+ * close all resources.
+ */
+
+ file = H5Fcreate (SRC_FILE[i], H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ space = H5Screate_simple (RANK1, dims, NULL);
+ dset = H5Dcreate2 (file, SRC_DATASET[i], H5T_NATIVE_INT, space, H5P_DEFAULT,
+ H5P_DEFAULT, H5P_DEFAULT);
+ status = H5Dwrite (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ wdata);
+ status = H5Sclose (space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+ }
+
+ /* Create file in which virtual dataset will be stored. */
+ file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create VDS dataspace. */
+ space = H5Screate_simple (RANK2, vdsdims, NULL);
+
+ /* Set VDS creation property. */
+ dcpl = H5Pcreate (H5P_DATASET_CREATE);
+ status = H5Pset_fill_value (dcpl, H5T_NATIVE_INT, &fill_value);
+
+ /* Initialize hyperslab values. */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 1;
+ count[1] = 1;
+ block[0] = 1;
+ block[1] = VDSDIM1;
+
+ /*
+ * Build the mappings.
+ * Selections in the source datasets are H5S_ALL.
+ * In the virtual dataset we select the first, the second and the third rows
+ * and map each row to the data in the corresponding source dataset.
+ */
+ src_space = H5Screate_simple (RANK1, dims, NULL);
+ for (i = 0; i < 3; i++) {
+ start[0] = (hsize_t)i;
+ /* Select i-th row in the virtual dataset; selection in the source datasets is the same. */
+ status = H5Sselect_hyperslab (space, H5S_SELECT_SET, start, NULL, count, block);
+ status = H5Pset_virtual (dcpl, space, SRC_FILE[i], SRC_DATASET[i], src_space);
+ }
+
+ /* Create a virtual dataset. */
+ dset = H5Dcreate2 (file, DATASET, H5T_NATIVE_INT, space, H5P_DEFAULT,
+ dcpl, H5P_DEFAULT);
+ status = H5Sclose (space);
+ status = H5Sclose (src_space);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+ /*
+ * Now we begin the read section of this example.
+ */
+
+ /*
+ * Open the file and virtual dataset.
+ */
+ file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dset = H5Dopen2 (file, DATASET, H5P_DEFAULT);
+
+ /*
+ * Get creation property list and mapping properties.
+ */
+ dcpl = H5Dget_create_plist (dset);
+
+ /*
+ * Get storage layout.
+ */
+ layout = H5Pget_layout (dcpl);
+ if (H5D_VIRTUAL == layout)
+ printf(" Dataset has a virtual layout \n");
+ else
+ printf(" Wrong layout found \n");
+
+ /*
+ * Find the number of mappings.
+ */
+ status = H5Pget_virtual_count (dcpl, &num_map);
+ printf(" Number of mappings is %lu\n", (unsigned long)num_map);
+
+ /*
+ * Get mapping parameters for each mapping.
+ */
+ for (i = 0; i < (int)num_map; i++) {
+ printf(" Mapping %d \n", i);
+ printf(" Selection in the virtual dataset ");
+ /* Get selection in the virttual dataset */
+ vspace = H5Pget_virtual_vspace (dcpl, (size_t)i);
+
+ /* Make sure that this is a hyperslab selection and then print information. */
+ if (H5Sget_select_type(vspace) == H5S_SEL_HYPERSLABS) {
+ nblocks = H5Sget_select_hyper_nblocks (vspace);
+ buf = (hsize_t *)malloc(sizeof(hsize_t)*2*RANK2*nblocks);
+ status = H5Sget_select_hyper_blocklist (vspace, (hsize_t)0, nblocks, buf);
+ for (l=0; l<nblocks; l++) {
+ printf("(");
+ for (k=0; k<RANK2-1; k++)
+ printf("%d,", (int)buf[k]);
+ printf("%d ) - (", (int)buf[k]);
+ for (k=0; k<RANK2-1; k++)
+ printf("%d,", (int)buf[RANK2+k]);
+ printf("%d)\n", (int)buf[RANK2+k]);
+ }
+ /* We also can use new APIs to get start, stride, count and block */
+ if (H5Sis_regular_hyperslab(vspace)) {
+ status = H5Sget_regular_hyperslab (vspace, start_out, stride_out, count_out, block_out);
+ printf(" start = [%llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1]);
+ printf(" stride = [%llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1]);
+ printf(" count = [%llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1]);
+ printf(" block = [%llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1]);
+ }
+ }
+ /* Get source file name. */
+ len = H5Pget_virtual_filename (dcpl, (size_t)i, NULL, 0);
+ filename = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_filename (dcpl, (size_t)i, filename, len+1);
+ printf(" Source filename %s\n", filename);
+
+ /* Get source dataset name. */
+ len = H5Pget_virtual_dsetname (dcpl, (size_t)i, NULL, 0);
+ dsetname = (char *)malloc((size_t)len*sizeof(char)+1);
+ H5Pget_virtual_dsetname (dcpl, (size_t)i, dsetname, len+1);
+ printf(" Source dataset name %s\n", dsetname);
+
+ /* Get selection in the source dataset. */
+ printf(" Selection in the source dataset ");
+ src_space = H5Pget_virtual_srcspace (dcpl, (size_t)i);
+
+ /* Make sure it is ALL selection and then print the coordinates. */
+ if(H5Sget_select_type(src_space) == H5S_SEL_ALL) {
+ printf("(0) - (%d) \n", DIM0-1);
+ }
+ H5Sclose(vspace);
+ H5Sclose(src_space);
+ free(filename);
+ free(dsetname);
+ free(buf);
+ }
+
+ /*
+ * Read the data using the default properties.
+ */
+ status = H5Dread (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ rdata[0]);
+
+ /*
+ * Output the data to the screen.
+ */
+ printf (" VDS Data:\n");
+ for (i=0; i<VDSDIM0; i++) {
+ printf (" [");
+ for (j=0; j<VDSDIM1; j++)
+ printf (" %3d", rdata[i][j]);
+ printf ("]\n");
+ }
+ /*
+ * Close and release resources.
+ */
+ status = H5Pclose (dcpl);
+ status = H5Dclose (dset);
+ status = H5Fclose (file);
+
+ return 0;
+}
+
diff --git a/examples/run-c-ex.sh.in b/examples/run-c-ex.sh.in
index 6b5d0f7..1661344 100644
--- a/examples/run-c-ex.sh.in
+++ b/examples/run-c-ex.sh.in
@@ -125,7 +125,23 @@ then
RunTest h5_elink_unix2win &&\
rm h5_elink_unix2win &&\
RunTest h5_shared_mesg &&\
- rm h5_shared_mesg); then
+ rm h5_shared_mesg &&\
+ RunTest h5_vds-eiger &&\
+ rm h5_vds-eiger &&\
+ RunTest h5_vds-exclim &&\
+ rm h5_vds-exclim &&\
+ RunTest h5_vds-exc &&\
+ rm h5_vds-exc &&\
+ RunTest h5_vds-simpleIO &&\
+ rm h5_vds-simpleIO &&\
+ RunTest h5_vds-percival &&\
+ rm h5_vds-percival &&\
+ RunTest h5_vds-percival-unlim &&\
+ rm h5_vds-percival-unlim &&\
+ RunTest h5_vds-percival-unlim-maxmin&&\
+ rm h5_vds-percival-unlim-maxmin &&\
+ RunTest h5_vds &&\
+ rm h5_vds); then
EXIT_VALUE=${EXIT_SUCCESS}
else
EXIT_VALUE=${EXIT_FAILURE}
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index dc6ba0a..0e555c2 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -118,6 +118,7 @@ set (H5D_SRCS
${HDF5_SRC_DIR}/H5Dscatgath.c
${HDF5_SRC_DIR}/H5Dselect.c
${HDF5_SRC_DIR}/H5Dtest.c
+ ${HDF5_SRC_DIR}/H5Dvirtual.c
)
set (H5D_HDRS
diff --git a/src/H5D.c b/src/H5D.c
index f06ec9b..6183ec5 100644
--- a/src/H5D.c
+++ b/src/H5D.c
@@ -323,14 +323,9 @@ hid_t
H5Dopen2(hid_t loc_id, const char *name, hid_t dapl_id)
{
H5D_t *dset = NULL;
- H5G_loc_t loc; /* Object location of group */
- H5G_loc_t dset_loc; /* Object location of dataset */
- H5G_name_t path; /* Dataset group hier. path */
- H5O_loc_t oloc; /* Dataset object location */
- H5O_type_t obj_type; /* Type of object at location */
- hbool_t loc_found = FALSE; /* Location at 'name' found */
- hid_t dxpl_id = H5AC_ind_dxpl_id; /* dxpl to use to open datset */
- hid_t ret_value;
+ H5G_loc_t loc; /* Object location of group */
+ hid_t dxpl_id = H5AC_ind_dxpl_id; /* dxpl to use to open datset */
+ hid_t ret_value;
FUNC_ENTER_API(FAIL)
H5TRACE3("i", "i*si", loc_id, name, dapl_id);
@@ -348,41 +343,18 @@ H5Dopen2(hid_t loc_id, const char *name, hid_t dapl_id)
if(TRUE != H5P_isa_class(dapl_id, H5P_DATASET_ACCESS))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not dataset access property list")
- /* Set up dataset location to fill in */
- dset_loc.oloc = &oloc;
- dset_loc.path = &path;
- H5G_loc_reset(&dset_loc);
-
- /* Find the dataset object */
- if(H5G_loc_find(&loc, name, &dset_loc, dapl_id, dxpl_id) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_NOTFOUND, FAIL, "not found")
- loc_found = TRUE;
-
- /* Check that the object found is the correct type */
- if(H5O_obj_type(&oloc, &obj_type, dxpl_id) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get object type")
- if(obj_type != H5O_TYPE_DATASET)
- HGOTO_ERROR(H5E_DATASET, H5E_BADTYPE, FAIL, "not a dataset")
-
/* Open the dataset */
- if(NULL == (dset = H5D_open(&dset_loc, dapl_id, dxpl_id)))
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open dataset")
+ if(NULL == (dset = H5D__open_name(&loc, name, dapl_id, dxpl_id)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "unable to open dataset")
/* Register an atom for the dataset */
if((ret_value = H5I_register(H5I_DATASET, dset, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "can't register dataset atom")
done:
- if(ret_value < 0) {
- if(dset) {
- if(H5D_close(dset) < 0)
- HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataset")
- } /* end if */
- else {
- if(loc_found && H5G_loc_free(&dset_loc) < 0)
- HDONE_ERROR(H5E_DATASET, H5E_CANTRELEASE, FAIL, "can't free location")
- } /* end else */
- } /* end if */
+ if(ret_value < 0)
+ if(dset && H5D_close(dset) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataset")
FUNC_LEAVE_API(ret_value)
} /* end H5Dopen2() */
diff --git a/src/H5Ddeprec.c b/src/H5Ddeprec.c
index 3da6b95..cd2bc84 100644
--- a/src/H5Ddeprec.c
+++ b/src/H5Ddeprec.c
@@ -226,15 +226,10 @@ hid_t
H5Dopen1(hid_t loc_id, const char *name)
{
H5D_t *dset = NULL;
- H5G_loc_t loc; /* Object location of group */
- H5G_loc_t dset_loc; /* Object location of dataset */
- H5G_name_t path; /* Dataset group hier. path */
- H5O_loc_t oloc; /* Dataset object location */
- H5O_type_t obj_type; /* Type of object at location */
- hbool_t loc_found = FALSE; /* Location at 'name' found */
- hid_t dapl_id = H5P_DATASET_ACCESS_DEFAULT; /* dapl to use to open dataset */
- hid_t dxpl_id = H5AC_ind_dxpl_id; /* dxpl to use to open datset */
- hid_t ret_value;
+ H5G_loc_t loc; /* Object location of group */
+ hid_t dapl_id = H5P_DATASET_ACCESS_DEFAULT; /* dapl to use to open dataset */
+ hid_t dxpl_id = H5AC_ind_dxpl_id; /* dxpl to use to open datset */
+ hid_t ret_value;
FUNC_ENTER_API(FAIL)
H5TRACE2("i", "i*s", loc_id, name);
@@ -245,41 +240,18 @@ H5Dopen1(hid_t loc_id, const char *name)
if(!name || !*name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name")
- /* Set up dataset location to fill in */
- dset_loc.oloc = &oloc;
- dset_loc.path = &path;
- H5G_loc_reset(&dset_loc);
-
- /* Find the dataset object */
- if(H5G_loc_find(&loc, name, &dset_loc, H5P_DEFAULT, dxpl_id) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_NOTFOUND, FAIL, "not found")
- loc_found = TRUE;
-
- /* Check that the object found is the correct type */
- if(H5O_obj_type(&oloc, &obj_type, dxpl_id) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get object type")
- if(obj_type != H5O_TYPE_DATASET)
- HGOTO_ERROR(H5E_DATASET, H5E_BADTYPE, FAIL, "not a dataset")
-
/* Open the dataset */
- if(NULL == (dset = H5D_open(&dset_loc, dapl_id, dxpl_id)))
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open dataset")
+ if(NULL == (dset = H5D__open_name(&loc, name, dapl_id, dxpl_id)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "unable to open dataset")
/* Register an atom for the dataset */
if((ret_value = H5I_register(H5I_DATASET, dset, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "can't register dataset atom")
done:
- if(ret_value < 0) {
- if(dset != NULL) {
- if(H5D_close(dset) < 0)
- HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataset")
- } /* end if */
- else {
- if(loc_found && H5G_loc_free(&dset_loc) < 0)
- HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
- } /* end else */
- } /* end if */
+ if(ret_value < 0)
+ if(dset && H5D_close(dset) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataset")
FUNC_LEAVE_API(ret_value)
} /* end H5Dopen1() */
diff --git a/src/H5Dint.c b/src/H5Dint.c
index 53cd86a..97f4fc5 100644
--- a/src/H5Dint.c
+++ b/src/H5Dint.c
@@ -1091,7 +1091,7 @@ H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space, hid_t dcpl_id,
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "unable to initialize I/O operations")
/* Create the layout information for the new dataset */
- if((new_dset->shared->layout.ops->construct)(file, new_dset) < 0)
+ if(new_dset->shared->layout.ops->construct && (new_dset->shared->layout.ops->construct)(file, new_dset) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "unable to construct layout information")
/* Update the dataset's object header info. */
@@ -1144,6 +1144,69 @@ done:
} /* end H5D__create() */
+/*-------------------------------------------------------------------------
+ * Function: H5D__open_name
+ *
+ * Purpose: Opens an existing dataset by name.
+ *
+ * Return: Success: Ptr to a new dataset.
+ * Failure: NULL
+ *
+ * Programmer: Neil Fortner
+ * Friday, March 6, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+H5D_t *
+H5D__open_name(const H5G_loc_t *loc, const char *name, hid_t dapl_id,
+ hid_t dxpl_id)
+{
+ H5D_t *dset = NULL;
+ H5G_loc_t dset_loc; /* Object location of dataset */
+ H5G_name_t path; /* Dataset group hier. path */
+ H5O_loc_t oloc; /* Dataset object location */
+ H5O_type_t obj_type; /* Type of object at location */
+ hbool_t loc_found = FALSE; /* Location at 'name' found */
+ H5D_t *ret_value; /* Return value */
+
+ FUNC_ENTER_PACKAGE
+
+ /* Check args */
+ HDassert(loc);
+ HDassert(name);
+
+ /* Set up dataset location to fill in */
+ dset_loc.oloc = &oloc;
+ dset_loc.path = &path;
+ H5G_loc_reset(&dset_loc);
+
+ /* Find the dataset object */
+ if(H5G_loc_find(loc, name, &dset_loc, dapl_id, dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_NOTFOUND, NULL, "not found")
+ loc_found = TRUE;
+
+ /* Check that the object found is the correct type */
+ if(H5O_obj_type(&oloc, &obj_type, dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, NULL, "can't get object type")
+ if(obj_type != H5O_TYPE_DATASET)
+ HGOTO_ERROR(H5E_DATASET, H5E_BADTYPE, NULL, "not a dataset")
+
+ /* Open the dataset */
+ if(NULL == (dset = H5D_open(&dset_loc, dapl_id, dxpl_id)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "can't open dataset")
+
+ /* Set return value */
+ ret_value = dset;
+
+done:
+ if(!ret_value)
+ if(loc_found && H5G_loc_free(&dset_loc) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CANTRELEASE, NULL, "can't free location")
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__open_name() */
+
+
/*
*-------------------------------------------------------------------------
* Function: H5D_open
@@ -1342,6 +1405,10 @@ H5D__open_oid(H5D_t *dataset, hid_t dapl_id, hid_t dxpl_id)
fill_prop->alloc_time = H5D_ALLOC_TIME_INCR;
break;
+ case H5D_VIRTUAL:
+ fill_prop->alloc_time = H5D_ALLOC_TIME_INCR;
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -1356,7 +1423,8 @@ H5D__open_oid(H5D_t *dataset, hid_t dapl_id, hid_t dxpl_id)
alloc_time_state = 0;
if((dataset->shared->layout.type == H5D_COMPACT && fill_prop->alloc_time == H5D_ALLOC_TIME_EARLY)
|| (dataset->shared->layout.type == H5D_CONTIGUOUS && fill_prop->alloc_time == H5D_ALLOC_TIME_LATE)
- || (dataset->shared->layout.type == H5D_CHUNKED && fill_prop->alloc_time == H5D_ALLOC_TIME_INCR))
+ || (dataset->shared->layout.type == H5D_CHUNKED && fill_prop->alloc_time == H5D_ALLOC_TIME_INCR)
+ || (dataset->shared->layout.type == H5D_VIRTUAL && fill_prop->alloc_time == H5D_ALLOC_TIME_INCR))
alloc_time_state = 1;
/* Set revised fill value properties, if they are different from the defaults */
@@ -1486,6 +1554,34 @@ H5D_close(H5D_t *dataset)
dataset->shared->layout.storage.u.compact.buf = H5MM_xfree(dataset->shared->layout.storage.u.compact.buf);
break;
+ case H5D_VIRTUAL:
+ {
+ size_t i, j;
+
+ HDassert(dataset->shared->layout.storage.u.virt.list || (dataset->shared->layout.storage.u.virt.list_nused == 0));
+
+ /* Close source datasets */
+ for(i = 0; i < dataset->shared->layout.storage.u.virt.list_nused; i++) {
+ /* Close source dataset */
+ if(dataset->shared->layout.storage.u.virt.list[i].source_dset.dset) {
+ HDassert(dataset->shared->layout.storage.u.virt.list[i].source_dset.dset != dataset);
+ if(H5D_close(dataset->shared->layout.storage.u.virt.list[i].source_dset.dset) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to close source dataset")
+ dataset->shared->layout.storage.u.virt.list[i].source_dset.dset = NULL;
+ } /* end if */
+
+ /* Close sub datasets */
+ for(j = 0; j < dataset->shared->layout.storage.u.virt.list[i].sub_dset_nused; j++)
+ if(dataset->shared->layout.storage.u.virt.list[i].sub_dset[j].dset) {
+ HDassert(dataset->shared->layout.storage.u.virt.list[i].sub_dset[j].dset != dataset);
+ if(H5D_close(dataset->shared->layout.storage.u.virt.list[i].sub_dset[j].dset) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to close source dataset")
+ dataset->shared->layout.storage.u.virt.list[i].sub_dset[j].dset = NULL;
+ } /* end if */
+ } /* end for */
+ } /* end block */
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -1495,13 +1591,6 @@ H5D_close(H5D_t *dataset)
#endif /* NDEBUG */
} /* end switch */ /*lint !e788 All appropriate cases are covered */
- /*
- * Release datatype, dataspace and creation property list -- there isn't
- * much we can do if one of these fails, so we just continue.
- */
- free_failed = (unsigned)(H5I_dec_ref(dataset->shared->type_id) < 0 || H5S_close(dataset->shared->space) < 0 ||
- H5I_dec_ref(dataset->shared->dcpl_id) < 0);
-
/* Remove the dataset from the list of opened objects in the file */
if(H5FO_top_decr(dataset->oloc.file, dataset->oloc.addr) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTRELEASE, FAIL, "can't decrement count for object")
@@ -1514,6 +1603,13 @@ H5D_close(H5D_t *dataset)
HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release object header")
/*
+ * Release datatype, dataspace and creation property list -- there isn't
+ * much we can do if one of these fails, so we just continue.
+ */
+ free_failed = (unsigned)(H5I_dec_ref(dataset->shared->type_id) < 0 || H5S_close(dataset->shared->space) < 0 ||
+ H5I_dec_ref(dataset->shared->dcpl_id) < 0);
+
+ /*
* Free memory. Before freeing the memory set the file pointer to NULL.
* We always check for a null file pointer in other H5D functions to be
* sure we're not accessing an already freed dataset (see the HDassert()
@@ -1730,6 +1826,15 @@ H5D__alloc_storage(const H5D_t *dset, hid_t dxpl_id, H5D_time_alloc_t time_alloc
} /* end if */
break;
+ case H5D_VIRTUAL:
+ /* No-op, as the raw data is stored elsewhere and the global
+ * heap object containing the mapping information is created
+ * when the layout message is encoded. We may wish to move the
+ * creation of the global heap object here at some point, but we
+ * will have to make sure is it always created before the
+ * dataset is closed. */
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -1849,6 +1954,9 @@ H5D__init_storage(const H5D_t *dset, hbool_t full_overwrite, hsize_t old_dim[],
break;
} /* end block */
+ case H5D_VIRTUAL:
+ /* No-op, as the raw data is stored elsewhere */
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -1905,6 +2013,12 @@ H5D__get_storage_size(H5D_t *dset, hid_t dxpl_id, hsize_t *storage_size)
*storage_size = dset->shared->layout.storage.u.compact.size;
break;
+ case H5D_VIRTUAL:
+ /* Just set to 0, as virtual datasets do not actually store raw data
+ */
+ *storage_size = 0;
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -1941,6 +2055,7 @@ H5D__get_offset(const H5D_t *dset)
HDassert(dset);
switch(dset->shared->layout.type) {
+ case H5D_VIRTUAL:
case H5D_CHUNKED:
case H5D_COMPACT:
break;
@@ -2206,6 +2321,7 @@ H5D__set_extent(H5D_t *dset, const hsize_t *size, hid_t dxpl_id)
{
hsize_t curr_dims[H5S_MAX_RANK]; /* Current dimension sizes */
htri_t changed; /* Whether the dataspace changed size */
+ size_t u, v; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE_TAG(dxpl_id, dset->oloc.addr, FAIL)
@@ -2241,10 +2357,9 @@ H5D__set_extent(H5D_t *dset, const hsize_t *size, hid_t dxpl_id)
hbool_t shrink = FALSE; /* Flag to indicate a dimension has shrank */
hbool_t expand = FALSE; /* Flag to indicate a dimension has grown */
hbool_t update_chunks = FALSE; /* Flag to indicate chunk cache update is needed */
- unsigned u; /* Local index variable */
/* Determine if we are shrinking and/or expanding any dimensions */
- for(u = 0; u < dset->shared->ndims; u++) {
+ for(u = 0; u < (size_t)dset->shared->ndims; u++) {
/* Check for various status changes */
if(size[u] < curr_dims[u])
shrink = TRUE;
@@ -2305,6 +2420,30 @@ H5D__set_extent(H5D_t *dset, const hsize_t *size, hid_t dxpl_id)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "unable to update cached chunk indices")
} /* end if */
+ /* Operations for virtual datasets */
+ if(H5D_VIRTUAL == dset->shared->layout.type) {
+ /* Check that the dimensions of the VDS are large enough */
+ if(H5D_virtual_check_min_dims(dset) < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "virtual dataset dimensions not large enough to contain all limited dimensions in all selections")
+
+ /* Patch the virtual selection dataspaces */
+ for(u = 0; u < dset->shared->layout.storage.u.virt.list_nused; u++) {
+ /* Patch extent */
+ if(H5S_set_extent(dset->shared->layout.storage.u.virt.list[u].source_dset.virtual_select, size) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to modify size of data space")
+ dset->shared->layout.storage.u.virt.list[u].virtual_space_status = H5O_VIRTUAL_STATUS_CORRECT;
+
+ /* Patch sub-source datasets */
+ for(v = 0; v < dset->shared->layout.storage.u.virt.list[u].sub_dset_nalloc; v++)
+ if(H5S_set_extent(dset->shared->layout.storage.u.virt.list[u].sub_dset[v].virtual_select, size) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to modify size of data space")
+ } /* end for */
+
+ /* Mark virtual datasets as not fully initialized so internal
+ * selections are recalculated (at next I/O operation) */
+ dset->shared->layout.storage.u.virt.init = FALSE;
+ } /* end if */
+
/* Allocate space for the new parts of the dataset, if appropriate */
if(expand && dset->shared->dcpl_cache.fill.alloc_time == H5D_ALLOC_TIME_EARLY)
if(H5D__alloc_storage(dset, dxpl_id, H5D_ALLOC_EXTEND, FALSE, curr_dims) < 0)
@@ -2748,6 +2887,11 @@ H5D_get_space(H5D_t *dset)
FUNC_ENTER_NOAPI_NOINIT
+ /* If the layout is virtual, update the extent */
+ if(dset->shared->layout.type == H5D_VIRTUAL)
+ if(H5D__virtual_set_extent_unlim(dset, H5AC_ind_dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to update virtual dataset extent")
+
/* Read the data space message and return a data space object */
if(NULL == (space = H5S_copy(dset->shared->space, FALSE, TRUE)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to get data space")
@@ -2815,3 +2959,4 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D_get_type() */
+
diff --git a/src/H5Dio.c b/src/H5Dio.c
index f9e8f37..3126b92 100644
--- a/src/H5Dio.c
+++ b/src/H5Dio.c
@@ -52,9 +52,6 @@
/********************/
/* Internal I/O routines */
-static herr_t H5D__write(H5D_t *dataset, hid_t mem_type_id,
- const H5S_t *mem_space, const H5S_t *file_space, hid_t dset_xfer_plist,
- const void *buf);
static herr_t H5D__pre_write(H5D_t *dset, hbool_t direct_write, hid_t mem_type_id,
const H5S_t *mem_space, const H5S_t *file_space, hid_t dxpl_id, const void *buf);
@@ -581,7 +578,7 @@ done:
*
*-------------------------------------------------------------------------
*/
-static herr_t
+herr_t
H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space,
const H5S_t *file_space, hid_t dxpl_id, const void *buf)
{
@@ -614,7 +611,7 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space,
char fake_char; /* Temporary variable for NULL buffer pointers */
herr_t ret_value = SUCCEED; /* Return value */
- FUNC_ENTER_STATIC_TAG(dxpl_id, dataset->oloc.addr, FAIL)
+ FUNC_ENTER_PACKAGE_TAG(dxpl_id, dataset->oloc.addr, FAIL)
/* check args */
HDassert(dataset && dataset->oloc.file);
diff --git a/src/H5Dlayout.c b/src/H5Dlayout.c
index 01898f2..85882fe 100644
--- a/src/H5Dlayout.c
+++ b/src/H5Dlayout.c
@@ -104,6 +104,10 @@ H5D__layout_set_io_ops(const H5D_t *dataset)
dataset->shared->layout.ops = H5D_LOPS_COMPACT;
break;
+ case H5D_VIRTUAL:
+ dataset->shared->layout.ops = H5D_LOPS_VIRTUAL;
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -169,6 +173,11 @@ H5D__layout_meta_size(const H5F_t *f, const H5O_layout_t *layout, hbool_t includ
ret_value += H5F_SIZEOF_ADDR(f); /* Address of data */
break;
+ case H5D_VIRTUAL:
+ ret_value += H5F_SIZEOF_ADDR(f); /* Address of global heap */
+ ret_value += 4; /* Global heap index */
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -382,68 +391,55 @@ H5D__layout_oh_read(H5D_t *dataset, hid_t dxpl_id, hid_t dapl_id, H5P_genplist_t
if(H5D_CHUNKED == dataset->shared->layout.type)
dataset->shared->layout.u.chunk.ndims++;
- switch(dataset->shared->layout.type) {
- case H5D_CONTIGUOUS:
- {
- hsize_t tmp_size; /* Temporary holder for raw data size */
- size_t tmp_sieve_buf_size; /* Temporary holder for sieve buffer size */
-
- /* Compute the size of the contiguous storage for versions of the
- * layout message less than version 3 because versions 1 & 2 would
- * truncate the dimension sizes to 32-bits of information. - QAK 5/26/04
- */
- if(dataset->shared->layout.version < 3) {
- hssize_t snelmts; /* Temporary holder for number of elements in dataspace */
- hsize_t nelmts; /* Number of elements in dataspace */
- size_t dt_size; /* Size of datatype */
-
- /* Retrieve the number of elements in the dataspace */
- if((snelmts = H5S_GET_EXTENT_NPOINTS(dataset->shared->space)) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve number of elements in dataspace")
- nelmts = (hsize_t)snelmts;
-
- /* Get the datatype's size */
- if(0 == (dt_size = H5T_GET_SIZE(dataset->shared->type)))
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve size of datatype")
-
- /* Compute the size of the dataset's contiguous storage */
- tmp_size = nelmts * dt_size;
-
- /* Check for overflow during multiplication */
- if(nelmts != (tmp_size / dt_size))
- HGOTO_ERROR(H5E_DATASET, H5E_OVERFLOW, FAIL, "size of dataset's storage overflowed")
-
- /* Assign the dataset's contiguous storage size */
- dataset->shared->layout.storage.u.contig.size = tmp_size;
- } else
- tmp_size = dataset->shared->layout.storage.u.contig.size;
-
- /* Get the sieve buffer size for the file */
- tmp_sieve_buf_size = H5F_SIEVE_BUF_SIZE(dataset->oloc.file);
-
- /* Adjust the sieve buffer size to the smaller one between the dataset size and the buffer size
- * from the file access property. (SLU - 2012/3/30) */
- if(tmp_size < tmp_sieve_buf_size)
- dataset->shared->cache.contig.sieve_buf_size = tmp_size;
- else
- dataset->shared->cache.contig.sieve_buf_size = tmp_sieve_buf_size;
- }
- break;
-
- case H5D_CHUNKED:
- /* Initialize the chunk cache for the dataset */
- if(H5D__chunk_init(dataset->oloc.file, dxpl_id, dataset, dapl_id) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't initialize chunk cache")
- break;
-
- case H5D_COMPACT:
- break;
+ if(H5D_CONTIGUOUS == dataset->shared->layout.type) {
+ hsize_t tmp_size; /* Temporary holder for raw data size */
+ size_t tmp_sieve_buf_size; /* Temporary holder for sieve buffer size */
+
+ /* Compute the size of the contiguous storage for versions of the
+ * layout message less than version 3 because versions 1 & 2 would
+ * truncate the dimension sizes to 32-bits of information. - QAK 5/26/04
+ */
+ if(dataset->shared->layout.version < 3) {
+ hssize_t snelmts; /* Temporary holder for number of elements in dataspace */
+ hsize_t nelmts; /* Number of elements in dataspace */
+ size_t dt_size; /* Size of datatype */
+
+ /* Retrieve the number of elements in the dataspace */
+ if((snelmts = H5S_GET_EXTENT_NPOINTS(dataset->shared->space)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve number of elements in dataspace")
+ nelmts = (hsize_t)snelmts;
+
+ /* Get the datatype's size */
+ if(0 == (dt_size = H5T_GET_SIZE(dataset->shared->type)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve size of datatype")
+
+ /* Compute the size of the dataset's contiguous storage */
+ tmp_size = nelmts * dt_size;
+
+ /* Check for overflow during multiplication */
+ if(nelmts != (tmp_size / dt_size))
+ HGOTO_ERROR(H5E_DATASET, H5E_OVERFLOW, FAIL, "size of dataset's storage overflowed")
+
+ /* Assign the dataset's contiguous storage size */
+ dataset->shared->layout.storage.u.contig.size = tmp_size;
+ } /* end if */
+ else
+ tmp_size = dataset->shared->layout.storage.u.contig.size;
+
+ /* Get the sieve buffer size for the file */
+ tmp_sieve_buf_size = H5F_SIEVE_BUF_SIZE(dataset->oloc.file);
+
+ /* Adjust the sieve buffer size to the smaller one between the dataset size and the buffer size
+ * from the file access property. (SLU - 2012/3/30) */
+ if(tmp_size < tmp_sieve_buf_size)
+ dataset->shared->cache.contig.sieve_buf_size = tmp_size;
+ else
+ dataset->shared->cache.contig.sieve_buf_size = tmp_sieve_buf_size;
+ } /* end if */
- case H5D_LAYOUT_ERROR:
- case H5D_NLAYOUTS:
- default:
- HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "unknown storage method")
- } /* end switch */ /*lint !e788 All appropriate cases are covered */
+ /* Initialize the layout information for the new dataset */
+ if(dataset->shared->layout.ops->init && (dataset->shared->layout.ops->init)(dataset->oloc.file, dxpl_id, dataset, dapl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize layout information")
done:
FUNC_LEAVE_NOAPI(ret_value)
diff --git a/src/H5Doh.c b/src/H5Doh.c
index abf76d0..2e52102 100644
--- a/src/H5Doh.c
+++ b/src/H5Doh.c
@@ -398,6 +398,17 @@ H5O__dset_bh_info(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5_ih_info_t *bh_info)
if(H5D__chunk_bh_info(f, dxpl_id, &layout, &pline, &(bh_info->index_size)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't determine chunked dataset btree info")
} /* end if */
+ else if(layout.type == H5D_VIRTUAL
+ && (layout.storage.u.virt.serial_list_hobjid.addr != HADDR_UNDEF)) {
+ size_t virtual_heap_size;
+
+ /* Get size of global heap object for virtual dataset */
+ if(H5HG_get_obj_size(f, dxpl_id, &(layout.storage.u.virt.serial_list_hobjid), &virtual_heap_size) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get global heap size for virtual dataset mapping")
+
+ /* Return heap size */
+ bh_info->heap_size = (hsize_t)virtual_heap_size;
+ } /* end if */
/* Check for External File List message in the object header */
if((exists = H5O_msg_exists_oh(oh, H5O_EFL_ID)) < 0)
diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h
index 1476229..44e119c 100644
--- a/src/H5Dpkg.h
+++ b/src/H5Dpkg.h
@@ -519,6 +519,7 @@ H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_CONTIG[1];
H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_EFL[1];
H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_COMPACT[1];
H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_CHUNK[1];
+H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_VIRTUAL[1];
/* Chunked layout operations */
H5_DLLVAR const H5D_chunk_ops_t H5D_COPS_BTREE[1];
@@ -535,6 +536,8 @@ H5_DLL H5D_t *H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space,
H5_DLL H5D_t *H5D__create_named(const H5G_loc_t *loc, const char *name,
hid_t type_id, const H5S_t *space, hid_t lcpl_id, hid_t dcpl_id,
hid_t dapl_id, hid_t dxpl_id);
+H5_DLL H5D_t *H5D__open_name(const H5G_loc_t *loc, const char *name,
+ hid_t dapl_id, hid_t dxpl_id);
H5_DLL herr_t H5D__get_space_status(H5D_t *dset, H5D_space_status_t *allocation,
hid_t dxpl_id);
H5_DLL herr_t H5D__alloc_storage(const H5D_t *dset, hid_t dxpl_id, H5D_time_alloc_t time_alloc,
@@ -557,6 +560,9 @@ H5_DLL herr_t H5D__flush_real(H5D_t *dataset, hid_t dxpl_id);
H5_DLL herr_t H5D__read(H5D_t *dataset, hid_t mem_type_id,
const H5S_t *mem_space, const H5S_t *file_space, hid_t dset_xfer_plist,
void *buf/*out*/);
+H5_DLL herr_t H5D__write(H5D_t *dataset, hid_t mem_type_id,
+ const H5S_t *mem_space, const H5S_t *file_space, hid_t dset_xfer_plist,
+ const void *buf);
/* Functions that perform direct serial I/O operations */
H5_DLL herr_t H5D__select_read(const H5D_io_info_t *io_info,
@@ -605,7 +611,6 @@ H5_DLL herr_t H5D__contig_copy(H5F_t *f_src, const H5O_storage_contig_t *storage
H5_DLL herr_t H5D__contig_delete(H5F_t *f, hid_t dxpl_id,
const H5O_storage_t *store);
-
/* Functions that operate on chunked dataset storage */
H5_DLL htri_t H5D__chunk_cacheable(const H5D_io_info_t *io_info, haddr_t caddr,
hbool_t write_op);
@@ -652,6 +657,17 @@ H5_DLL herr_t H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *storage_src
H5F_t *f_dst, H5O_storage_compact_t *storage_dst, H5T_t *src_dtype,
H5O_copy_t *cpy_info, hid_t dxpl_id);
+/* Functions that operate on virtual dataset storage */
+H5_DLL herr_t H5D__virtual_copy_layout(H5O_layout_t *layout);
+H5_DLL herr_t H5D__virtual_set_extent_unlim(const H5D_t *dset, hid_t dxpl_id);
+H5_DLL herr_t H5D__virtual_reset_layout(H5O_layout_t *layout);
+H5_DLL herr_t H5D__virtual_delete(H5F_t *f, hid_t dxpl_id, H5O_storage_t *storage);
+H5_DLL herr_t H5D__virtual_copy(H5F_t *f_src, H5O_layout_t *layout_dst,
+ hid_t dxpl_id);
+H5_DLL herr_t H5D__virtual_init(H5F_t *f, hid_t dxpl_id, const H5D_t *dset,
+ hid_t dapl_id);
+H5_DLL hbool_t H5D__virtual_is_space_alloc(const H5O_storage_t *storage);
+
/* Functions that operate on EFL (External File List)*/
H5_DLL hbool_t H5D__efl_is_space_alloc(const H5O_storage_t *storage);
H5_DLL herr_t H5D__efl_bh_info(H5F_t *f, hid_t dxpl_id, H5O_efl_t *efl,
diff --git a/src/H5Dprivate.h b/src/H5Dprivate.h
index 55e5b47..d3a23eb 100644
--- a/src/H5Dprivate.h
+++ b/src/H5Dprivate.h
@@ -52,6 +52,8 @@
#define H5D_ACS_DATA_CACHE_NUM_SLOTS_NAME "rdcc_nslots" /* Size of raw data chunk cache(slots) */
#define H5D_ACS_DATA_CACHE_BYTE_SIZE_NAME "rdcc_nbytes" /* Size of raw data chunk cache(bytes) */
#define H5D_ACS_PREEMPT_READ_CHUNKS_NAME "rdcc_w0" /* Preemption read chunks first */
+#define H5D_ACS_VDS_VIEW_NAME "vds_view" /* VDS view option */
+#define H5D_ACS_VDS_PRINTF_GAP_NAME "vds_printf_gap" /* VDS printf gap size */
/* ======== Data transfer properties ======== */
#define H5D_XFER_MAX_TEMP_BUF_NAME "max_temp_buf" /* Maximum temp buffer size */
@@ -106,6 +108,9 @@
#define H5D_VLEN_FREE NULL
#define H5D_VLEN_FREE_INFO NULL
+/* Default virtual dataset list size */
+#define H5D_VIRTUAL_DEF_LIST_SIZE 8
+
/****************************/
/* Library Private Typedefs */
@@ -174,6 +179,19 @@ H5_DLL herr_t H5D_vlen_reclaim(hid_t type_id, H5S_t *space, hid_t plist_id,
/* Functions that operate on chunked storage */
H5_DLL herr_t H5D_chunk_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr);
+/* Functions that operate on virtual storage */
+H5_DLL herr_t H5D_virtual_check_mapping_pre(const H5S_t *vspace,
+ const H5S_t *src_space, H5O_virtual_space_status_t space_status);
+H5_DLL herr_t H5D_virtual_check_mapping_post(
+ const H5O_storage_virtual_ent_t *ent);
+H5_DLL herr_t H5D_virtual_check_min_dims(const H5D_t *dset);
+H5_DLL herr_t H5D_virtual_update_min_dims(H5O_layout_t *layout, size_t idx);
+H5_DLL herr_t H5D_virtual_parse_source_name(const char *source_name,
+ H5O_storage_virtual_name_seg_t **parsed_name, size_t *static_strlen,
+ size_t *nsubs);
+H5_DLL void H5D_virtual_free_parsed_name(
+ H5O_storage_virtual_name_seg_t *name_seg);
+
/* Functions that operate on indexed storage */
H5_DLL herr_t H5D_btree_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr, FILE * stream,
int indent, int fwidth, unsigned ndims, const uint32_t *dim);
diff --git a/src/H5Dpublic.h b/src/H5Dpublic.h
index 1b5fed7..a1f87e3 100644
--- a/src/H5Dpublic.h
+++ b/src/H5Dpublic.h
@@ -51,7 +51,8 @@ typedef enum H5D_layout_t {
H5D_COMPACT = 0, /*raw data is very small */
H5D_CONTIGUOUS = 1, /*the default */
H5D_CHUNKED = 2, /*slow and fancy */
- H5D_NLAYOUTS = 3 /*this one must be last! */
+ H5D_VIRTUAL = 3, /*actual data is stored in other datasets */
+ H5D_NLAYOUTS = 4 /*this one must be last! */
} H5D_layout_t;
/* Types of chunk index data structures */
@@ -93,6 +94,13 @@ typedef enum H5D_fill_value_t {
H5D_FILL_VALUE_USER_DEFINED =2
} H5D_fill_value_t;
+/* Values for VDS bounds option */
+typedef enum H5D_vds_view_t {
+ H5D_VDS_ERROR = -1,
+ H5D_VDS_FIRST_MISSING = 0,
+ H5D_VDS_LAST_AVAILABLE = 1
+} H5D_vds_view_t;
+
/********************/
/* Public Variables */
/********************/
diff --git a/src/H5Dvirtual.c b/src/H5Dvirtual.c
new file mode 100644
index 0000000..10e53c9
--- /dev/null
+++ b/src/H5Dvirtual.c
@@ -0,0 +1,2727 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Neil Fortner <nfortne2@hdfgroup.org>
+ * Wednesday, January 28, 2015
+ *
+ * Purpose:
+ * Virtual Dataset (VDS) functions. Creates a layout type which allows
+ * definition of a virtual dataset, where the actual dataset is stored in
+ * other datasets (called source datasets). The mappings between the
+ * virtual and source datasets are specified by hyperslab or "all"
+ * dataspace selections. Point selections are not currently supported.
+ * Overlaps in the mappings in the virtual dataset result in undefined
+ * behaviour.
+ *
+ * Mapping selections may be unlimited, in which case the size of the
+ * virtual dataset is determined by the size of the source dataset(s).
+ * Names for the source datasets may also be generated procedurally, in
+ * which case the virtual selection should be unlimited with an unlimited
+ * count and the source selection should be limited with a size equal to
+ * that of the virtual selection with the unlimited count set to 1.
+ *
+ * Source datasets are opened lazily (only when needed for I/O or to
+ * determine the size of the virtual dataset), and are currently held open
+ * until the virtual dataset is closed.
+ */
+
+/****************/
+/* Module Setup */
+/****************/
+
+#define H5D_PACKAGE /* Suppress error about including H5Dpkg */
+
+
+/***********/
+/* Headers */
+/***********/
+#include "H5private.h" /* Generic Functions */
+#include "H5Dpkg.h" /* Dataset functions */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5Fprivate.h" /* Files */
+#include "H5FLprivate.h" /* Free Lists */
+#include "H5Gprivate.h" /* Groups */
+#include "H5HGprivate.h" /* Global Heaps */
+#include "H5Iprivate.h" /* IDs */
+#include "H5MMprivate.h" /* Memory management */
+#include "H5Oprivate.h" /* Object headers */
+#include "H5Sprivate.h" /* Dataspaces */
+
+
+/****************/
+/* Local Macros */
+/****************/
+
+/* Default size for sub_dset array */
+#define H5D_VIRTUAL_DEF_SUB_DSET_SIZE 128
+
+
+/******************/
+/* Local Typedefs */
+/******************/
+
+
+/********************/
+/* Local Prototypes */
+/********************/
+
+/* Layout operation callbacks */
+static herr_t H5D__virtual_read(H5D_io_info_t *io_info, const H5D_type_info_t
+ *type_info, hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space,
+ H5D_chunk_map_t *fm);
+static herr_t H5D__virtual_write(H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
+ const H5S_t *mem_space, H5D_chunk_map_t *fm);
+static herr_t H5D__virtual_flush(H5D_t *dset, hid_t dxpl_id);
+
+/* Other functions */
+static herr_t H5D__virtual_open_source_dset(const H5D_t *vdset,
+ H5O_storage_virtual_ent_t *virtual_ent,
+ H5O_storage_virtual_srcdset_t *source_dset, hid_t dxpl_id);
+static herr_t H5D__virtual_reset_source_dset(
+ H5O_storage_virtual_ent_t *virtual_ent,
+ H5O_storage_virtual_srcdset_t *source_dset);
+static herr_t H5D__virtual_str_append(const char *src, size_t src_len, char **p,
+ char **buf, size_t *buf_size);
+static herr_t H5D__virtual_copy_parsed_name(
+ H5O_storage_virtual_name_seg_t **dst, H5O_storage_virtual_name_seg_t *src);
+static herr_t H5D__virtual_build_source_name(char *source_name,
+ const H5O_storage_virtual_name_seg_t *parsed_name, size_t static_strlen,
+ size_t nsubs, hsize_t blockno, char **built_name);
+static herr_t H5D__virtual_init_all(const H5D_t *dset, hid_t dxpl_id);
+static herr_t H5D__virtual_pre_io(H5D_io_info_t *io_info,
+ H5O_storage_virtual_t *storage, const H5S_t *file_space,
+ const H5S_t *mem_space, hsize_t *tot_nelmts);
+static herr_t H5D__virtual_post_io(H5O_storage_virtual_t *storage);
+static herr_t H5D__virtual_read_one(H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info, const H5S_t *file_space,
+ H5O_storage_virtual_srcdset_t *source_dset);
+static herr_t H5D__virtual_write_one(H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info, const H5S_t *file_space,
+ H5O_storage_virtual_srcdset_t *source_dset);
+
+
+/*********************/
+/* Package Variables */
+/*********************/
+
+/* Contiguous storage layout I/O ops */
+const H5D_layout_ops_t H5D_LOPS_VIRTUAL[1] = {{
+ NULL,
+ H5D__virtual_init,
+ H5D__virtual_is_space_alloc,
+ NULL,
+ H5D__virtual_read,
+ H5D__virtual_write,
+#ifdef H5_HAVE_PARALLEL
+ NULL,
+ NULL,
+#endif /* H5_HAVE_PARALLEL */
+ NULL,
+ NULL,
+ H5D__virtual_flush,
+ NULL
+}};
+
+
+/*******************/
+/* Local Variables */
+/*******************/
+
+/* Declare a free list to manage the H5O_storage_virtual_name_seg_t struct */
+H5FL_DEFINE(H5O_storage_virtual_name_seg_t);
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_virtual_check_mapping_pre
+ *
+ * Purpose: Checks that the provided virtual and source selections are
+ * legal for use as a VDS mapping, prior to creating the rest
+ * of the mapping entry.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * August 12, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D_virtual_check_mapping_pre(const H5S_t *vspace, const H5S_t *src_space,
+ H5O_virtual_space_status_t space_status)
+{
+ H5S_sel_type select_type; /* Selection type */
+ hsize_t nelmts_vs; /* Number of elements in virtual selection */
+ hsize_t nelmts_ss; /* Number of elements in source selection */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Check for point selections (currently unsupported) */
+ if(H5S_SEL_ERROR == (select_type = H5S_GET_SELECT_TYPE(vspace)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get selection type")
+ if(select_type == H5S_SEL_POINTS)
+ HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "point selections not currently supported with virtual datasets")
+ if(H5S_SEL_ERROR == (select_type = H5S_GET_SELECT_TYPE(src_space)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get selection type")
+ if(select_type == H5S_SEL_POINTS)
+ HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "point selections not currently supported with virtual datasets")
+
+ /* Get number of elements in spaces */
+ nelmts_vs = (hsize_t)H5S_GET_SELECT_NPOINTS(vspace);
+ nelmts_ss = (hsize_t)H5S_GET_SELECT_NPOINTS(src_space);
+
+ /* Check for unlimited vspace */
+ if(nelmts_vs == H5S_UNLIMITED) {
+ /* Check for unlimited src_space */
+ if(nelmts_ss == H5S_UNLIMITED) {
+ hsize_t nenu_vs; /* Number of elements in the non-unlimited dimensions of vspace */
+ hsize_t nenu_ss; /* Number of elements in the non-unlimited dimensions of src_space */
+
+ /* Non-printf unlimited selection. Make sure both selections have
+ * the same number of elements in the non-unlimited dimension. Note
+ * we can always check this even if the space status is invalid
+ * because unlimited selections are never dependent on the extent.
+ */
+ if(H5S_get_select_num_elem_non_unlim(vspace, &nenu_vs) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "can't get number of elements in non-unlimited dimension")
+ if(H5S_get_select_num_elem_non_unlim(src_space, &nenu_ss) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "can't get number of elements in non-unlimited dimension")
+ if(nenu_vs != nenu_ss)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "numbers of elemnts in the non-unlimited dimensions is different for source and virtual spaces")
+ } /* end if */
+ /* We will handle the printf case after parsing the source names */
+ } /* end if */
+ else if(space_status != H5O_VIRTUAL_STATUS_INVALID)
+ /* Limited selections. Check number of points is the same. */
+ if(nelmts_vs != nelmts_ss)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "virtual and source space selections have different numbers of elements")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_virtual_check_mapping_pre() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_virtual_check_mapping_post
+ *
+ * Purpose: Checks that the provided virtual dataset mapping entry is
+ * legal, after the mapping is otherwise complete.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * August 12, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D_virtual_check_mapping_post(const H5O_storage_virtual_ent_t *ent)
+{
+ hsize_t nelmts_vs; /* Number of elements in virtual selection */
+ hsize_t nelmts_ss; /* Number of elements in source selection */
+ H5S_t *tmp_space = NULL; /* Temporary dataspace */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Get number of elements in spaces */
+ nelmts_vs = (hsize_t)H5S_GET_SELECT_NPOINTS(ent->source_dset.virtual_select);
+ nelmts_ss = (hsize_t)H5S_GET_SELECT_NPOINTS(ent->source_select);
+
+ /* Check for printf selection */
+ if((nelmts_vs == H5S_UNLIMITED) && (nelmts_ss != H5S_UNLIMITED)) {
+ /* Make sure there at least one %b substitution in the source file or
+ * dataset name */
+ if((ent->psfn_nsubs == 0) && (ent->psdn_nsubs == 0))
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "unlimited virtual selection, limited source selection, and no printf specifiers in source names")
+
+ /* Make sure virtual space uses hyperslab selection */
+ if(H5S_GET_SELECT_TYPE(ent->source_dset.virtual_select) != H5S_SEL_HYPERSLABS)
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "virtual selection with printf mapping must be hyperslab")
+
+ /* Check that the number of elements in one block in the virtual
+ * selection matches the total number of elements in the source
+ * selection, if the source space status is not invalid (virtual space
+ * status does not matter here because it is unlimited) */
+ if(ent->source_space_status != H5O_VIRTUAL_STATUS_INVALID) {
+ /* Get first block in virtual selection */
+ if(NULL == (tmp_space = H5S_hyper_get_unlim_block(ent->source_dset.virtual_select, (hsize_t)0)))
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get first block in virtual selection")
+
+ /* Check number of points */
+ nelmts_vs = (hsize_t)H5S_GET_SELECT_NPOINTS(tmp_space);
+ if(nelmts_vs != nelmts_ss)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "virtual (single block) and source space selections have different numbers of elements")
+ } /* end if */
+ } /* end if */
+ else
+ /* Make sure there are no printf substitutions */
+ if((ent->psfn_nsubs > 0) || (ent->psdn_nsubs > 0))
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "printf specifier(s) in source name(s) without an unlimited virtual selection and limited source selection")
+
+done:
+ /* Free temporary space */
+ if(tmp_space)
+ if(H5S_close(tmp_space) < 0)
+ HDONE_ERROR(H5E_PLIST, H5E_CLOSEERROR, FAIL, "can't close dataspace")
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_virtual_check_mapping_post() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_virtual_update_min_dims
+ *
+ * Purpose: Updates the virtual layout's "min_dims" field to take into
+ * account the "idx"th entry in the mapping list. The entry
+ * must be complete, though top level field list_nused (and
+ * of course min_dims) does not need to take it into account.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * February 10, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D_virtual_update_min_dims(H5O_layout_t *layout, size_t idx)
+{
+ H5S_sel_type sel_type;
+ int rank;
+ hsize_t bounds_start[H5S_MAX_RANK];
+ hsize_t bounds_end[H5S_MAX_RANK];
+ int i;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ HDassert(layout);
+ HDassert(layout->type == H5D_VIRTUAL);
+ HDassert(idx < layout->storage.u.virt.list_nalloc);
+
+ /* Get type of selection */
+ if(H5S_SEL_ERROR == (sel_type = H5S_GET_SELECT_TYPE(layout->storage.u.virt.list[idx].source_dset.virtual_select)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get selection type")
+
+ /* Do not update min_dims for "all" or "none" selections */
+ if((sel_type == H5S_SEL_ALL) || (sel_type == H5S_SEL_NONE))
+ HGOTO_DONE(SUCCEED)
+
+ /* Get rank of vspace */
+ if((rank = H5S_GET_EXTENT_NDIMS(layout->storage.u.virt.list[idx].source_dset.virtual_select)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get number of dimensions")
+
+ /* Get selection bounds */
+ if(H5S_SELECT_BOUNDS(layout->storage.u.virt.list[idx].source_dset.virtual_select, bounds_start, bounds_end) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get selection bounds")
+
+ /* Update min_dims */
+ for(i = 0; i < rank; i++)
+ /* Don't check unlimited dimensions in the selection */
+ if((i != layout->storage.u.virt.list[idx].unlim_dim_virtual)
+ && (bounds_end[i] >= layout->storage.u.virt.min_dims[i]))
+ layout->storage.u.virt.min_dims[i] = bounds_end[i] + (hsize_t)1;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_virtual_update_min_dims() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_virtual_check_min_dims
+ *
+ * Purpose: Checks if the dataset's dimensions are at least the
+ * calculated minimum dimensions from the mappings.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * August 13, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D_virtual_check_min_dims(const H5D_t *dset)
+{
+ int rank;
+ hsize_t dims[H5S_MAX_RANK];
+ int i;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ HDassert(dset);
+ HDassert(dset->shared);
+ HDassert(dset->shared->layout.type == H5D_VIRTUAL);
+
+ /* Get rank of dataspace */
+ if((rank = H5S_GET_EXTENT_NDIMS(dset->shared->space)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get number of dimensions")
+
+ /* Get VDS dimensions */
+ if(H5S_get_simple_extent_dims(dset->shared->space, dims, NULL) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get VDS dimensions")
+
+ /* Verify that dimensions are larger than min_dims */
+ for(i = 0; i < rank; i++)
+ if(dims[i] < dset->shared->layout.storage.u.virt.min_dims[i])
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "virtual dataset dimensions not large enough to contain all limited dimensions in all selections")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_virtual_check_min_dims() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_copy_layout
+ *
+ * Purpose: Deep copies virtual storage layout message in memory.
+ * This function assumes that the top-level struct has
+ * already been copied (so the source struct retains
+ * ownership of the fields passed to this function).
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * February 10, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D__virtual_copy_layout(H5O_layout_t *layout)
+{
+ H5O_storage_virtual_ent_t *orig_list = NULL;
+ hid_t orig_source_fapl;
+ hid_t orig_source_dapl;
+ H5P_genplist_t *plist;
+ size_t i;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE
+
+ HDassert(layout);
+ HDassert(layout->type == H5D_VIRTUAL);
+
+ /* Save original entry list and top-level property lists and reset in layout
+ * so the originals aren't closed on error */
+ orig_source_fapl = layout->storage.u.virt.source_fapl;
+ layout->storage.u.virt.source_fapl = -1;
+ orig_source_dapl = layout->storage.u.virt.source_dapl;
+ layout->storage.u.virt.source_dapl = -1;
+ orig_list = layout->storage.u.virt.list;
+ layout->storage.u.virt.list = NULL;
+
+ /* Copy entry list */
+ if(layout->storage.u.virt.list_nused > 0) {
+ HDassert(orig_list);
+
+ /* Allocate memory for the list */
+ if(NULL == (layout->storage.u.virt.list = (H5O_storage_virtual_ent_t *)H5MM_calloc(layout->storage.u.virt.list_nused * sizeof(H5O_storage_virtual_ent_t))))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "unable to allocate memory for virtual dataset entry list")
+ layout->storage.u.virt.list_nalloc = layout->storage.u.virt.list_nused;
+
+ /* Copy the list entries, though set source_dset.dset and sub_dset to
+ * NULL */
+ for(i = 0; i < layout->storage.u.virt.list_nused; i++) {
+ /* Copy virtual selection */
+ if(NULL == (layout->storage.u.virt.list[i].source_dset.virtual_select
+ = H5S_copy(orig_list[i].source_dset.virtual_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy virtual selection")
+
+ /* Copy original source names */
+ if(NULL == (layout->storage.u.virt.list[i].source_file_name
+ = HDstrdup(orig_list[i].source_file_name)))
+ HGOTO_ERROR(H5E_DATASET, H5E_RESOURCE, FAIL, "unable to duplicate source file name")
+ if(NULL == (layout->storage.u.virt.list[i].source_dset_name
+ = HDstrdup(orig_list[i].source_dset_name)))
+ HGOTO_ERROR(H5E_DATASET, H5E_RESOURCE, FAIL, "unable to duplicate source dataset name")
+
+ /* Copy source selection */
+ if(NULL == (layout->storage.u.virt.list[i].source_select
+ = H5S_copy(orig_list[i].source_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy source selection")
+
+ /* Initialize clipped selections */
+ if(orig_list[i].unlim_dim_virtual < 0) {
+ layout->storage.u.virt.list[i].source_dset.clipped_source_select = layout->storage.u.virt.list[i].source_select;
+ layout->storage.u.virt.list[i].source_dset.clipped_virtual_select = layout->storage.u.virt.list[i].source_dset.virtual_select;
+ } /* end if */
+
+ /* Copy parsed names */
+ if(H5D__virtual_copy_parsed_name(&layout->storage.u.virt.list[i].parsed_source_file_name, orig_list[i].parsed_source_file_name) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy parsed source file name")
+ layout->storage.u.virt.list[i].psfn_static_strlen = orig_list[i].psfn_static_strlen;
+ layout->storage.u.virt.list[i].psfn_nsubs = orig_list[i].psfn_nsubs;
+ if(H5D__virtual_copy_parsed_name(&layout->storage.u.virt.list[i].parsed_source_dset_name, orig_list[i].parsed_source_dset_name) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy parsed source dataset name")
+ layout->storage.u.virt.list[i].psdn_static_strlen = orig_list[i].psdn_static_strlen;
+ layout->storage.u.virt.list[i].psdn_nsubs = orig_list[i].psdn_nsubs;
+
+ /* Copy source names in source dset or add reference as appropriate
+ */
+ if(orig_list[i].source_dset.file_name) {
+ if(orig_list[i].source_dset.file_name
+ == orig_list[i].source_file_name)
+ layout->storage.u.virt.list[i].source_dset.file_name = layout->storage.u.virt.list[i].source_file_name;
+ else if(orig_list[i].parsed_source_file_name
+ && (orig_list[i].source_dset.file_name
+ != orig_list[i].parsed_source_file_name->name_segment)) {
+ HDassert(layout->storage.u.virt.list[i].parsed_source_file_name);
+ HDassert(layout->storage.u.virt.list[i].parsed_source_file_name->name_segment);
+ layout->storage.u.virt.list[i].source_dset.file_name = layout->storage.u.virt.list[i].parsed_source_file_name->name_segment;
+ } /* end if */
+ else
+ if(NULL == (layout->storage.u.virt.list[i].source_dset.file_name
+ = HDstrdup(orig_list[i].source_dset.file_name)))
+ HGOTO_ERROR(H5E_DATASET, H5E_RESOURCE, FAIL, "unable to duplicate source file name")
+ } /* end if */
+ if(orig_list[i].source_dset.dset_name) {
+ if(orig_list[i].source_dset.dset_name
+ == orig_list[i].source_dset_name)
+ layout->storage.u.virt.list[i].source_dset.dset_name = layout->storage.u.virt.list[i].source_dset_name;
+ else if(orig_list[i].parsed_source_dset_name
+ && (orig_list[i].source_dset.dset_name
+ != orig_list[i].parsed_source_dset_name->name_segment)) {
+ HDassert(layout->storage.u.virt.list[i].parsed_source_dset_name);
+ HDassert(layout->storage.u.virt.list[i].parsed_source_dset_name->name_segment);
+ layout->storage.u.virt.list[i].source_dset.dset_name = layout->storage.u.virt.list[i].parsed_source_dset_name->name_segment;
+ } /* end if */
+ else
+ if(NULL == (layout->storage.u.virt.list[i].source_dset.dset_name
+ = HDstrdup(orig_list[i].source_dset.dset_name)))
+ HGOTO_ERROR(H5E_DATASET, H5E_RESOURCE, FAIL, "unable to duplicate source dataset name")
+ } /* end if */
+
+ /* Copy other fields in entry */
+ layout->storage.u.virt.list[i].unlim_dim_source = orig_list[i].unlim_dim_source;
+ layout->storage.u.virt.list[i].unlim_dim_virtual = orig_list[i].unlim_dim_virtual;
+ layout->storage.u.virt.list[i].unlim_extent_source = orig_list[i].unlim_extent_source;
+ layout->storage.u.virt.list[i].unlim_extent_virtual = orig_list[i].unlim_extent_virtual;
+ layout->storage.u.virt.list[i].clip_size_source = orig_list[i].clip_size_source;
+ layout->storage.u.virt.list[i].clip_size_virtual = orig_list[i].clip_size_virtual;
+ layout->storage.u.virt.list[i].source_space_status = orig_list[i].source_space_status;
+ layout->storage.u.virt.list[i].virtual_space_status = orig_list[i].virtual_space_status;
+ } /* end for */
+ } /* end if */
+ else {
+ /* Zero out other fields related to list, just to be sure */
+ layout->storage.u.virt.list = NULL;
+ layout->storage.u.virt.list_nalloc = 0;
+ } /* end else */
+
+ /* Copy property lists */
+ if(orig_source_fapl >= 0) {
+ if(NULL == (plist = (H5P_genplist_t *)H5I_object_verify(orig_source_fapl, H5I_GENPROP_LST)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list")
+ if((layout->storage.u.virt.source_fapl = H5P_copy_plist(plist, FALSE)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "can't copy fapl")
+ } /* end if */
+ if(orig_source_dapl >= 0) {
+ if(NULL == (plist = (H5P_genplist_t *)H5I_object_verify(orig_source_dapl, H5I_GENPROP_LST)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list")
+ if((layout->storage.u.virt.source_dapl = H5P_copy_plist(plist, FALSE)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "can't copy dapl")
+ } /* end if */
+
+ /* New layout is not fully initialized */
+ layout->storage.u.virt.init = FALSE;
+
+done:
+ /* Release allocated resources on failure */
+ if(ret_value < 0)
+ if(H5D__virtual_reset_layout(layout) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "unable to reset virtual layout")
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_copy_layout() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_reset_layout
+ *
+ * Purpose: Frees internal structures in a virtual storage layout
+ * message in memory. This function is safe to use on
+ * incomplete structures (for recovery from failure) provided
+ * the internal structures are initialized with all bytes set
+ * to 0.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * February 11, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D__virtual_reset_layout(H5O_layout_t *layout)
+{
+ size_t i, j;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE
+
+ HDassert(layout);
+ HDassert(layout->type == H5D_VIRTUAL);
+
+ /* Free the list entries. Note we always attempt to free everything even in
+ * the case of a failure. Because of this, and because we free the list
+ * afterwards, we do not need to zero out the memory in the list. */
+ for(i = 0; i < layout->storage.u.virt.list_nused; i++) {
+ /* Free source_dset */
+ if(H5D__virtual_reset_source_dset(&layout->storage.u.virt.list[i], &layout->storage.u.virt.list[i].source_dset) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "unable to reset source dataset")
+
+ /* Free original source names */
+ (void)H5MM_xfree(layout->storage.u.virt.list[i].source_file_name);
+ (void)H5MM_xfree(layout->storage.u.virt.list[i].source_dset_name);
+
+ /* Free sub_dset */
+ for(j = 0; j < layout->storage.u.virt.list[i].sub_dset_nalloc; j++)
+ if(H5D__virtual_reset_source_dset(&layout->storage.u.virt.list[i], &layout->storage.u.virt.list[i].sub_dset[j]) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "unable to reset source dataset")
+ layout->storage.u.virt.list[i].sub_dset = (H5O_storage_virtual_srcdset_t *)H5MM_xfree(layout->storage.u.virt.list[i].sub_dset);
+
+ /* Free source_select */
+ if(layout->storage.u.virt.list[i].source_select)
+ if(H5S_close(layout->storage.u.virt.list[i].source_select) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release source selection")
+
+ /* Free parsed_source_file_name */
+ H5D_virtual_free_parsed_name(layout->storage.u.virt.list[i].parsed_source_file_name);
+
+ /* Free parsed_source_dset_name */
+ H5D_virtual_free_parsed_name(layout->storage.u.virt.list[i].parsed_source_dset_name);
+ } /* end for */
+
+ /* Free the list */
+ layout->storage.u.virt.list = (H5O_storage_virtual_ent_t *)H5MM_xfree(layout->storage.u.virt.list);
+ layout->storage.u.virt.list_nalloc = (size_t)0;
+ layout->storage.u.virt.list_nused = (size_t)0;
+ (void)HDmemset(layout->storage.u.virt.min_dims, 0, sizeof(layout->storage.u.virt.min_dims));
+
+ /* Close access property lists */
+ if(layout->storage.u.virt.source_fapl >= 0)
+ if(H5I_dec_ref(layout->storage.u.virt.source_fapl) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "can't close source fapl")
+ if(layout->storage.u.virt.source_dapl >= 0)
+ if(H5I_dec_ref(layout->storage.u.virt.source_dapl) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "can't close source dapl")
+
+ /* The list is no longer initialized */
+ layout->storage.u.virt.init = FALSE;
+
+ /* Note the lack of a done: label. This is because there are no HGOTO_ERROR
+ * calls. If one is added, a done: label must also be added */
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_reset_layout() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_copy
+ *
+ * Purpose: Copy virtual storage raw data from SRC file to DST file.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * February 6, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D__virtual_copy(H5F_t H5_ATTR_UNUSED *f_dst, H5O_layout_t *layout_dst,
+ hid_t H5_ATTR_UNUSED dxpl_id)
+{
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_PACKAGE
+
+ /* Copy message in memory */
+ if(H5D__virtual_copy_layout(layout_dst) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy virtual layout")
+
+#ifdef NOT_YET
+ /* Check for copy to the same file */
+ if(f_dst == f_src) {
+ /* Increase reference count on global heap object */
+ if((heap_rc = H5HG_link(f_dst, dxpl_id, (H5HG_t *)&(layout_dst->u.virt.serial_list_hobjid), 1)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTMODIFY, FAIL, "unable to adjust global heap refence count")
+ } /* end if */
+ else
+#endif /* NOT_YET */
+ {
+ /* Reset global heap id so a new heap object is created when the message
+ * is flushed */
+ layout_dst->storage.u.virt.serial_list_hobjid.addr = HADDR_UNDEF;
+ layout_dst->storage.u.virt.serial_list_hobjid.idx = (size_t)0;
+ } /* end block/else */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_copy() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_delete
+ *
+ * Purpose: Delete the file space for a virtual dataset
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * February 6, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D__virtual_delete(H5F_t *f, hid_t dxpl_id, H5O_storage_t *storage)
+{
+#ifdef NOT_YET
+ int heap_rc; /* Reference count of global heap object */
+#endif /* NOT_YET */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_PACKAGE
+
+ /* check args */
+ HDassert(f);
+ HDassert(storage);
+ HDassert(storage->type == H5D_VIRTUAL);
+
+ /* Check for global heap block */
+ if(storage->u.virt.serial_list_hobjid.addr != HADDR_UNDEF) {
+#ifdef NOT_YET
+ /* Unlink the global heap block */
+ if((heap_rc = H5HG_link(f, dxpl_id, (H5HG_t *)&(storage->u.virt.serial_list_hobjid), -1)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTMODIFY, FAIL, "unable to adjust global heap refence count")
+ if(heap_rc == 0)
+#endif /* NOT_YET */
+ /* Delete the global heap block */
+ if(H5HG_remove(f, dxpl_id, (H5HG_t *)&(storage->u.virt.serial_list_hobjid)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTREMOVE, FAIL, "unable to remove heap object")
+ } /* end if */
+
+ /* Clear global heap ID in storage */
+ storage->u.virt.serial_list_hobjid.addr = HADDR_UNDEF;
+ storage->u.virt.serial_list_hobjid.idx = 0;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_delete */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_open_source_dset
+ *
+ * Purpose: Attempts to open a source dataset.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * March 6, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_open_source_dset(const H5D_t *vdset,
+ H5O_storage_virtual_ent_t *virtual_ent,
+ H5O_storage_virtual_srcdset_t *source_dset, hid_t dxpl_id)
+{
+ H5F_t *src_file = NULL; /* Source file */
+ hbool_t src_file_open = FALSE; /* Whether we have opened and need to close src_file */
+ H5G_loc_t src_root_loc; /* Object location of source file root group */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(vdset);
+ HDassert(source_dset);
+ HDassert(!source_dset->dset);
+ HDassert(source_dset->file_name);
+ HDassert(source_dset->dset_name);
+
+ /* Check if we need to open the source file */
+ if(HDstrcmp(source_dset->file_name, ".")) {
+ /* Open the source file */
+ if(NULL == (src_file = H5F_open(source_dset->file_name, H5F_INTENT(vdset->oloc.file) & H5F_ACC_RDWR, H5P_FILE_CREATE_DEFAULT, vdset->shared->layout.storage.u.virt.source_fapl, dxpl_id)))
+ H5E_clear_stack(NULL); /* Quick hack until proper support for H5Fopen with missing file is implemented */
+ else
+ src_file_open = TRUE;
+ } /* end if */
+ else
+ /* Source file is ".", use the virtual dataset's file */
+ src_file = vdset->oloc.file;
+
+ if(src_file) {
+ /* Set up the root group in the destination file */
+ if(NULL == (src_root_loc.oloc = H5G_oloc(H5G_rootof(src_file))))
+ HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "unable to get object location for root group")
+ if(NULL == (src_root_loc.path = H5G_nameof(H5G_rootof(src_file))))
+ HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "unable to get path for root group")
+
+ /* Open the source dataset */
+ if(NULL == (source_dset->dset = H5D__open_name(&src_root_loc, source_dset->dset_name, vdset->shared->layout.storage.u.virt.source_dapl, dxpl_id))) {
+ H5E_clear_stack(NULL); /* Quick hack until proper support for H5Dopen with missing file is implemented */
+
+ /* Dataset does not exist */
+ source_dset->dset_exists = FALSE;
+ } /* end if */
+ else {
+ /* Dataset exists */
+ source_dset->dset_exists = TRUE;
+
+ /* Patch the source selection if necessary */
+ if(virtual_ent->source_space_status != H5O_VIRTUAL_STATUS_CORRECT) {
+ if(H5S_extent_copy(virtual_ent->source_select, source_dset->dset->shared->space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "can't copy source dataspace extent")
+ virtual_ent->source_space_status = H5O_VIRTUAL_STATUS_CORRECT;
+ } /* end if */
+ } /* end else */
+ } /* end if */
+
+done:
+ /* Close source file */
+ if(src_file_open)
+ if(H5F_try_close(src_file) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CANTCLOSEFILE, FAIL, "can't close source file")
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_open_source_dset() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_reset_source_dset
+ *
+ * Purpose: Frees space reference by a source dataset struct.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * May 20, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_reset_source_dset(H5O_storage_virtual_ent_t *virtual_ent,
+ H5O_storage_virtual_srcdset_t *source_dset)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(source_dset);
+
+ /* Free dataset */
+ if(source_dset->dset) {
+ if(H5D_close(source_dset->dset) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to close source dataset")
+ source_dset->dset = NULL;
+ } /* end if */
+
+ /* Free file name */
+ if(virtual_ent->parsed_source_file_name
+ && (source_dset->file_name
+ != virtual_ent->parsed_source_file_name->name_segment))
+ source_dset->file_name = (char *)H5MM_xfree(source_dset->file_name);
+ else
+ HDassert((source_dset->file_name == virtual_ent->source_file_name)
+ || (virtual_ent->parsed_source_file_name
+ && (source_dset->file_name
+ == virtual_ent->parsed_source_file_name->name_segment))
+ || !source_dset->file_name);
+
+ /* Free dataset name */
+ if(virtual_ent->parsed_source_dset_name
+ && (source_dset->dset_name
+ != virtual_ent->parsed_source_dset_name->name_segment))
+ source_dset->dset_name = (char *)H5MM_xfree(source_dset->dset_name);
+ else
+ HDassert((source_dset->dset_name == virtual_ent->source_dset_name)
+ || (virtual_ent->parsed_source_dset_name
+ && (source_dset->dset_name
+ == virtual_ent->parsed_source_dset_name->name_segment))
+ || !source_dset->dset_name);
+
+ /* Free clipped virtual selection */
+ if(source_dset->clipped_virtual_select) {
+ if(source_dset->clipped_virtual_select != source_dset->virtual_select)
+ if(H5S_close(source_dset->clipped_virtual_select) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped virtual selection")
+ source_dset->clipped_virtual_select = NULL;
+ } /* end if */
+
+ /* Free virtual selection */
+ if(source_dset->virtual_select) {
+ if(H5S_close(source_dset->virtual_select) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release virtual selection")
+ source_dset->virtual_select = NULL;
+ } /* end if */
+
+ /* Free clipped source selection */
+ if(source_dset->clipped_source_select) {
+ if(source_dset->clipped_source_select != virtual_ent->source_select)
+ if(H5S_close(source_dset->clipped_source_select) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped source selection")
+ source_dset->clipped_source_select = NULL;
+ } /* end if */
+
+ /* The projected memory space should never exist when this function is
+ * called */
+ HDassert(!source_dset->projected_mem_space);
+
+ /* Note the lack of a done: label. This is because there are no HGOTO_ERROR
+ * calls. If one is added, a done: label must also be added */
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_reset_source_dset() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_str_append
+ *
+ * Purpose: Appends src_len bytes of the string src to the position *p
+ * in the buffer *buf (allocating *buf if necessary).
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * May 19, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_str_append(const char *src, size_t src_len, char **p, char **buf,
+ size_t *buf_size)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(src);
+ HDassert(src_len > 0);
+ HDassert(p);
+ HDassert(buf);
+ HDassert(*p >= *buf);
+ HDassert(buf_size);
+
+ /* Allocate or extend buffer if necessary */
+ if(!*buf) {
+ HDassert(!*p);
+ HDassert(*buf_size == 0);
+
+ /* Allocate buffer */
+ if(NULL == (*buf = (char *)H5MM_malloc(src_len + (size_t)1)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to allocate name segment struct")
+ *buf_size = src_len + (size_t)1;
+ *p = *buf;
+ } /* end if */
+ else {
+ size_t p_offset = (size_t)(*p - *buf); /* Offset of p within buf */
+
+ /* Extend buffer if necessary */
+ if((p_offset + src_len + (size_t)1) > *buf_size) {
+ char *tmp_buf;
+ size_t tmp_buf_size;
+
+ /* Calculate new size of buffer */
+ tmp_buf_size = MAX(p_offset + src_len + (size_t)1,
+ *buf_size * (size_t)2);
+
+ /* Reallocate buffer */
+ if(NULL == (tmp_buf = (char *)H5MM_realloc(*buf, tmp_buf_size)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to reallocate name segment buffer")
+ *buf = tmp_buf;
+ *buf_size = tmp_buf_size;
+ *p = *buf + p_offset;
+ } /* end if */
+ } /* end else */
+
+ /* Copy string to *p. Note that since src in not NULL terminated, we must
+ * use memcpy */
+ (void)HDmemcpy(*p, src, src_len);
+
+ /* Advance *p */
+ *p += src_len;
+
+ /* Add NULL terminator */
+ **p = '\0';
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value);
+} /* end H5D__virtual_str_append() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_virtual_parse_source_name
+ *
+ * Purpose: Parses a source file or dataset name.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * May 18, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D_virtual_parse_source_name(const char *source_name,
+ H5O_storage_virtual_name_seg_t **parsed_name, size_t *static_strlen,
+ size_t *nsubs)
+{
+ H5O_storage_virtual_name_seg_t *tmp_parsed_name = NULL;
+ H5O_storage_virtual_name_seg_t **tmp_parsed_name_p = &tmp_parsed_name;
+ size_t tmp_static_strlen;
+ size_t tmp_strlen;
+ size_t tmp_nsubs = 0;
+ const char *p;
+ const char *pct;
+ char *name_seg_p = NULL;
+ size_t name_seg_size = 0;
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity check */
+ HDassert(source_name);
+ HDassert(parsed_name);
+ HDassert(static_strlen);
+ HDassert(nsubs);
+
+ /* Initialize p and tmp_static_strlen */
+ p = source_name;
+ tmp_static_strlen = tmp_strlen = HDstrlen(source_name);
+
+ /* Iterate over name */
+ /* Note this will not work with UTF-8! We should support this eventually
+ * -NAF 5/18/2015 */
+ while((pct = HDstrchr(p, '%'))) {
+ HDassert(pct >= p);
+
+ /* Allocate name segment struct if necessary */
+ if(!*tmp_parsed_name_p)
+ if(NULL == (*tmp_parsed_name_p = H5FL_CALLOC(H5O_storage_virtual_name_seg_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to allocate name segment struct")
+
+ /* Check for type of format specifier */
+ if(pct[1] == 'b') {
+ /* Check for blank string before specifier */
+ if(pct != p)
+ /* Append string to name segment */
+ if(H5D__virtual_str_append(p, (size_t)(pct - p), &name_seg_p, &(*tmp_parsed_name_p)->name_segment,
+ &name_seg_size) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to append name segment")
+
+ /* Update other variables */
+ tmp_parsed_name_p = &(*tmp_parsed_name_p)->next;
+ tmp_static_strlen -= 2;
+ tmp_nsubs++;
+ name_seg_p = NULL;
+ name_seg_size = 0;
+ } /* end if */
+ else if(pct[1] == '%') {
+ /* Append string to name segment (include first '%') */
+ if(H5D__virtual_str_append(p, (size_t)(pct - p) + (size_t)1, &name_seg_p, &(*tmp_parsed_name_p)->name_segment,
+&name_seg_size) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to append name segment")
+
+ /* Update other variables */
+ tmp_static_strlen -= 1;
+ } /* end else */
+ else
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid format specifier")
+
+ p = pct + 2;
+ } /* end while */
+
+ /* Copy last segment of name, if any, unless the parsed name was not
+ * allocated */
+ if(tmp_parsed_name) {
+ HDassert(p >= source_name);
+ if(*p == '\0')
+ HDassert((size_t)(p - source_name) == tmp_strlen);
+ else {
+ HDassert((size_t)(p - source_name) < tmp_strlen);
+
+ /* Allocate name segment struct if necessary */
+ if(!*tmp_parsed_name_p)
+ if(NULL == (*tmp_parsed_name_p = H5FL_CALLOC(H5O_storage_virtual_name_seg_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to allocate name segment struct")
+
+ /* Append string to name segment */
+ if(H5D__virtual_str_append(p, tmp_strlen - (size_t)(p - source_name), &name_seg_p, &(*tmp_parsed_name_p)->name_segment,
+ &name_seg_size) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to append name segment")
+ } /* end else */
+ } /* end if */
+
+ /* Set return values */
+ *parsed_name = tmp_parsed_name;
+ tmp_parsed_name = NULL;
+ *static_strlen = tmp_static_strlen;
+ *nsubs = tmp_nsubs;
+
+done:
+ if(tmp_parsed_name) {
+ HDassert(ret_value < 0);
+ H5D_virtual_free_parsed_name(tmp_parsed_name);
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D_virtual_parse_source_name() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_copy_parsed_name
+ *
+ * Purpose: Deep copies a parsed source file or dataset name.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * May 19, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_copy_parsed_name(H5O_storage_virtual_name_seg_t **dst,
+ H5O_storage_virtual_name_seg_t *src)
+{
+ H5O_storage_virtual_name_seg_t *tmp_dst = NULL;
+ H5O_storage_virtual_name_seg_t *p_src = src;
+ H5O_storage_virtual_name_seg_t **p_dst = &tmp_dst;
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(dst);
+
+ /* Walk over parsed name, duplicating it */
+ while(p_src) {
+ /* Allocate name segment struct */
+ if(NULL == (*p_dst = H5FL_CALLOC(H5O_storage_virtual_name_seg_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to allocate name segment struct")
+
+ /* Duplicate name segment */
+ if(p_src->name_segment) {
+ if(NULL == ((*p_dst)->name_segment = HDstrdup(p_src->name_segment)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to duplicate name segment")
+ } /* end if */
+
+ /* Advance pointers */
+ p_src = p_src->next;
+ p_dst = &(*p_dst)->next;
+ } /* end while */
+
+ /* Set dst */
+ *dst = tmp_dst;
+ tmp_dst = NULL;
+
+done:
+ if(tmp_dst) {
+ HDassert(ret_value < 0);
+ H5D_virtual_free_parsed_name(tmp_dst);
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_copy_parsed_name() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D_virtual_free_parsed_name
+ *
+ * Purpose: Frees the provided parsed name.
+ *
+ * Return: void
+ *
+ * Programmer: Neil Fortner
+ * May 19, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+H5D_virtual_free_parsed_name(H5O_storage_virtual_name_seg_t *name_seg)
+{
+ H5O_storage_virtual_name_seg_t *next_seg;
+
+ FUNC_ENTER_NOAPI_NOERR
+
+ /* Walk name segments, freeing them */
+ while(name_seg) {
+ (void)H5MM_xfree(name_seg->name_segment);
+ next_seg = name_seg->next;
+ (void)H5FL_FREE(H5O_storage_virtual_name_seg_t, name_seg);
+ name_seg = next_seg;
+ } /* end while */
+
+ FUNC_LEAVE_NOAPI_VOID
+} /* end H5D_virtual_free_parsed_name() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_build_source_name
+ *
+ * Purpose: Builds a source file or dataset name from a parsed name.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * May 18, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_build_source_name(char *source_name,
+ const H5O_storage_virtual_name_seg_t *parsed_name, size_t static_strlen,
+ size_t nsubs, hsize_t blockno, char **built_name)
+{
+ char *tmp_name = NULL; /* Name buffer */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(source_name);
+ HDassert(built_name);
+
+ /* Check for static name */
+ if(nsubs == 0) {
+ if(parsed_name)
+ *built_name = parsed_name->name_segment;
+ else
+ *built_name = source_name;
+ } /* end if */
+ else {
+ const H5O_storage_virtual_name_seg_t *name_seg = parsed_name;
+ char *p;
+ hsize_t blockno_down = blockno;
+ size_t blockno_len = 1;
+ size_t name_len;
+ size_t name_len_rem;
+ size_t seg_len;
+ size_t nsubs_rem = nsubs;
+
+ HDassert(parsed_name);
+
+ /* Calculate length of printed block number */
+ do {
+ blockno_down /= (hsize_t)10;
+ if(blockno_down == 0)
+ break;
+ blockno_len++;
+ } while(1);
+
+ /* Calculate length of name buffer */
+ name_len_rem = name_len = static_strlen + (nsubs * blockno_len) + (size_t)1;
+
+ /* Allocate name buffer */
+ if(NULL == (tmp_name = (char *)H5MM_malloc(name_len)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to allocate name buffer")
+ p = tmp_name;
+
+ /* Build name */
+ do {
+ /* Add name segment */
+ if(name_seg->name_segment) {
+ seg_len = HDstrlen(name_seg->name_segment);
+ HDassert(seg_len > 0);
+ HDassert(seg_len < name_len_rem);
+ HDstrncpy(p, name_seg->name_segment, name_len_rem);
+ name_len_rem -= seg_len;
+ p += seg_len;
+ } /* end if */
+
+ /* Add block number */
+ if(nsubs_rem > 0) {
+ HDassert(blockno_len < name_len_rem);
+ if(HDsnprintf(p, name_len_rem, "%llu", (long long unsigned)blockno) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "unable to write block number to string")
+ name_len_rem -= blockno_len;
+ p += blockno_len;
+ nsubs_rem--;
+ } /* end if */
+
+ /* Advance name_seg */
+ name_seg = name_seg->next;
+ } while(name_seg);
+
+ /* Assign built_name */
+ *built_name = tmp_name;
+ tmp_name = NULL;
+ } /* end else */
+
+done:
+ if(tmp_name) {
+ HDassert(ret_value < 0);
+ H5MM_free(tmp_name);
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_build_source_name() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_set_extent_unlim
+ *
+ * Purpose: Sets the extent of the virtual dataset by checking the
+ * extents of source datasets where an unlimited selection
+ * matching. Dimensions that are not unlimited in any
+ * virtual mapping selections are not affected.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * April 22, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D__virtual_set_extent_unlim(const H5D_t *dset, hid_t dxpl_id)
+{
+ H5O_storage_virtual_t *storage;
+ hsize_t new_dims[H5S_MAX_RANK];
+ hsize_t curr_dims[H5S_MAX_RANK];
+ hsize_t clip_size;
+ int rank;
+ hbool_t changed = FALSE; /* Whether the VDS extent changed */
+ size_t i, j;
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_PACKAGE
+
+ /* Sanity check */
+ HDassert(dset);
+ HDassert(dset->shared->layout.storage.type == H5D_VIRTUAL);
+ storage = &dset->shared->layout.storage.u.virt;
+ HDassert((storage->view == H5D_VDS_FIRST_MISSING) || (storage->view == H5D_VDS_LAST_AVAILABLE));
+
+ /* Get rank of VDS */
+ if((rank = H5S_GET_EXTENT_NDIMS(dset->shared->space)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get number of dimensions")
+
+ /* Initialize new_dims to HSIZE_UNDEF */
+ for(i = 0; i < (size_t)rank; i++)
+ new_dims[i] = HSIZE_UNDEF;
+
+ /* Iterate over mappings */
+ for(i = 0; i < storage->list_nalloc; i++)
+ /* Check for unlimited dimension */
+ if(storage->list[i].unlim_dim_virtual >= 0) {
+ /* Check for "printf" source dataset resolution */
+ if(storage->list[i].unlim_dim_source >= 0 ) {
+ /* Non-printf mapping */
+ /* Open source dataset */
+ if(!storage->list[i].source_dset.dset)
+ if(H5D__virtual_open_source_dset(dset, &storage->list[i], &storage->list[i].source_dset, dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "unable to open source dataset")
+
+ /* Check if source dataset is open */
+ if(storage->list[i].source_dset.dset) {
+ /* Retrieve current source dataset extent and patch mapping
+ */
+ if(H5S_extent_copy(storage->list[i].source_select, storage->list[i].source_dset.dset->shared->space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "can't copy source dataspace extent")
+
+ /* Get source space dimenstions */
+ if(H5S_get_simple_extent_dims(storage->list[i].source_select, curr_dims, NULL) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get source space dimensions")
+
+ /* Check if the source extent in the unlimited dimension
+ * changed since the last time the VDS extent/mapping
+ * was updated */
+ if(curr_dims[storage->list[i].unlim_dim_source]
+ == storage->list[i].unlim_extent_source)
+ /* Use cached result for clip size */
+ clip_size = storage->list[i].clip_size_virtual;
+ else {
+ /* Get size that virtual selection would be clipped to
+ * to match size of source selection within source
+ * extent */
+ clip_size = H5S_hyper_get_clip_extent_match(storage->list[i].source_dset.virtual_select, storage->list[i].source_select, curr_dims[storage->list[i].unlim_dim_source], storage->view == H5D_VDS_FIRST_MISSING);
+
+ /* If we are setting the extent by the last available
+ * data, clip virtual_select and source_select. Note
+ * that if we used the cached clip_size above or it
+ * happens to be the same, the virtual selection will
+ * already be clipped to the correct size. Likewise,
+ * if we used the cached clip_size the source selection
+ * will already be correct. */
+ if(storage->view == H5D_VDS_LAST_AVAILABLE) {
+ if(clip_size != storage->list[i].clip_size_virtual) {
+ /* Close previous clipped virtual selection, if
+ * any */
+ if(storage->list[i].source_dset.clipped_virtual_select) {
+ HDassert(storage->list[i].source_dset.clipped_virtual_select
+ != storage->list[i].source_dset.virtual_select);
+ if(H5S_close(storage->list[i].source_dset.clipped_virtual_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped virtual dataspace")
+ } /* end if */
+
+ /* Copy virtual selection */
+ if(NULL == (storage->list[i].source_dset.clipped_virtual_select = H5S_copy(storage->list[i].source_dset.virtual_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy virtual selection")
+
+ /* Clip virtual selection */
+ if(H5S_hyper_clip_unlim(storage->list[i].source_dset.clipped_virtual_select, clip_size))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "failed to clip unlimited selection")
+ } /* end if */
+
+ /* Close previous clipped source selection, if any
+ */
+ if(storage->list[i].source_dset.clipped_source_select) {
+ HDassert(storage->list[i].source_dset.clipped_source_select
+ != storage->list[i].source_select);
+ if(H5S_close(storage->list[i].source_dset.clipped_source_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped source dataspace")
+ } /* end if */
+
+ /* Copy source selection */
+ if(NULL == (storage->list[i].source_dset.clipped_source_select = H5S_copy(storage->list[i].source_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy source selection")
+
+ /* Clip source selection */
+ if(H5S_hyper_clip_unlim(storage->list[i].source_dset.clipped_source_select, curr_dims[storage->list[i].unlim_dim_source]))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "failed to clip unlimited selection")
+ } /* end if */
+
+ /* Update cached values unlim_extent_source and
+ * clip_size_virtual */
+ storage->list[i].unlim_extent_source = curr_dims[storage->list[i].unlim_dim_source];
+ storage->list[i].clip_size_virtual = clip_size;
+ } /* end else */
+ } /* end if */
+ else
+ clip_size = 0;
+ } /* end if */
+ else {
+ /* printf mapping */
+ hsize_t first_missing = 0; /* First missing dataset in the current block of missing datasets */
+
+ /* Search for source datasets */
+ HDassert(storage->printf_gap != HSIZE_UNDEF);
+ for(j = 0; j <= (storage->printf_gap + first_missing); j++) {
+ /* Check for running out of space in sub_dset array */
+ if(j >= (hsize_t)storage->list[i].sub_dset_nalloc) {
+ if(storage->list[i].sub_dset_nalloc == 0) {
+ /* Allocate sub_dset */
+ if(NULL == (storage->list[i].sub_dset = (H5O_storage_virtual_srcdset_t *)H5MM_calloc(H5D_VIRTUAL_DEF_SUB_DSET_SIZE * sizeof(H5O_storage_virtual_srcdset_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to allocate sub dataset array")
+ storage->list[i].sub_dset_nalloc = H5D_VIRTUAL_DEF_SUB_DSET_SIZE;
+ } /* end if */
+ else {
+ H5O_storage_virtual_srcdset_t *tmp_sub_dset;
+
+ /* Extend sub_dset */
+ if(NULL == (tmp_sub_dset = (H5O_storage_virtual_srcdset_t *)H5MM_realloc(storage->list[i].sub_dset, 2 * storage->list[i].sub_dset_nalloc * sizeof(H5O_storage_virtual_srcdset_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to extend sub dataset array")
+ storage->list[i].sub_dset = tmp_sub_dset;
+
+ /* Clear new space in sub_dset */
+ (void)HDmemset(&storage->list[i].sub_dset[storage->list[i].sub_dset_nalloc], 0, storage->list[i].sub_dset_nalloc * sizeof(H5O_storage_virtual_srcdset_t));
+
+ /* Update sub_dset_nalloc */
+ storage->list[i].sub_dset_nalloc *= 2;
+ } /* end else */
+ } /* end if */
+
+ /* Check if the dataset was already opened */
+ if(storage->list[i].sub_dset[j].dset_exists)
+ first_missing = j + 1;
+ else {
+ /* Resolve file name */
+ if(!storage->list[i].sub_dset[j].file_name)
+ if(H5D__virtual_build_source_name(storage->list[i].source_file_name, storage->list[i].parsed_source_file_name, storage->list[i].psfn_static_strlen, storage->list[i].psfn_nsubs, j, &storage->list[i].sub_dset[j].file_name) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to build source file name")
+
+ /* Resolve dset name */
+ if(!storage->list[i].sub_dset[j].dset_name)
+ if(H5D__virtual_build_source_name(storage->list[i].source_dset_name, storage->list[i].parsed_source_dset_name, storage->list[i].psdn_static_strlen, storage->list[i].psdn_nsubs, j, &storage->list[i].sub_dset[j].dset_name) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to build source dataset name")
+
+ /* Resolve virtual selection for block */
+ if(!storage->list[i].sub_dset[j].virtual_select)
+ if(NULL == (storage->list[i].sub_dset[j].virtual_select = H5S_hyper_get_unlim_block(storage->list[i].source_dset.virtual_select, j)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get block in unlimited selection")
+
+ /* Initialize clipped selections */
+ if(!storage->list[i].sub_dset[j].clipped_source_select)
+ storage->list[i].sub_dset[j].clipped_source_select = storage->list[i].source_select;
+ if(!storage->list[i].sub_dset[j].clipped_virtual_select)
+ storage->list[i].sub_dset[j].clipped_virtual_select = storage->list[i].sub_dset[j].virtual_select;
+
+ /* Open source dataset */
+ if(H5D__virtual_open_source_dset(dset, &storage->list[i], &storage->list[i].sub_dset[j], dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "unable to open source dataset")
+
+ if(storage->list[i].sub_dset[j].dset) {
+ /* Update first_missing */
+ first_missing = j + 1;
+
+ /* Close source dataset so we don't have huge
+ * numbers of datasets open */
+ if(H5D_close(storage->list[i].sub_dset[j].dset) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to close source dataset")
+ storage->list[i].sub_dset[j].dset = NULL;
+ } /* end if */
+ } /* end else */
+ } /* end for */
+
+ /* Check if the size changed */
+ if((first_missing == (hsize_t)storage->list[i].sub_dset_nused)
+ && (storage->list[i].clip_size_virtual != HSIZE_UNDEF))
+ /* Use cached clip_size */
+ clip_size = storage->list[i].clip_size_virtual;
+ else {
+ /* Check for no datasets */
+ if(first_missing == 0)
+ /* Set clip size to 0 */
+ clip_size = (hsize_t)0;
+ else {
+ hsize_t bounds_start[H5S_MAX_RANK];
+ hsize_t bounds_end[H5S_MAX_RANK];
+
+ /* Get clip size from selection */
+ if(storage->view == H5D_VDS_LAST_AVAILABLE) {
+ /* Get bounds from last valid virtual selection */
+ if(H5S_SELECT_BOUNDS(storage->list[i].sub_dset[first_missing - (hsize_t)1].virtual_select, bounds_start, bounds_end) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get selection bounds")
+
+ /* Set clip_size to bounds_end in unlimited
+ * dimension */
+ clip_size = bounds_end[storage->list[i].unlim_dim_virtual]
+ + (hsize_t)1;
+ } /* end if */
+ else {
+ /* Get bounds from first missing virtual selection
+ */
+ if(H5S_SELECT_BOUNDS(storage->list[i].sub_dset[first_missing].virtual_select, bounds_start, bounds_end) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get selection bounds")
+
+ /* Set clip_size to bounds_start in unlimited
+ * dimension */
+ clip_size = bounds_start[storage->list[i].unlim_dim_virtual];
+ } /* end else */
+ } /* end else */
+
+ /* Set sub_dset_nused and clip_size_virtual */
+ storage->list[i].sub_dset_nused = (size_t)first_missing;
+ storage->list[i].clip_size_virtual = clip_size;
+ } /* end else */
+ } /* end else */
+
+ /* Update new_dims */
+ if((new_dims[storage->list[i].unlim_dim_virtual] == HSIZE_UNDEF)
+ || (storage->view == H5D_VDS_FIRST_MISSING ? (clip_size
+ < (hsize_t)new_dims[storage->list[i].unlim_dim_virtual])
+ : (clip_size
+ > (hsize_t)new_dims[storage->list[i].unlim_dim_virtual])))
+ new_dims[storage->list[i].unlim_dim_virtual] = clip_size;
+ } /* end if */
+
+ /* Get current VDS dimensions */
+ if(H5S_get_simple_extent_dims(dset->shared->space, curr_dims, NULL) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get VDS dimensions")
+
+ /* Calculate new extent */
+ for(i = 0; i < (size_t)rank; i++) {
+ if(new_dims[i] == HSIZE_UNDEF)
+ new_dims[i] = curr_dims[i];
+ else if(new_dims[i] < storage->min_dims[i])
+ new_dims[i] = storage->min_dims[i];
+ if(new_dims[i] != curr_dims[i])
+ changed = TRUE;
+ } /* end for */
+
+ /* Update extent if it changed */
+ if(changed) {
+ /* Update VDS extent */
+ if(H5S_set_extent(dset->shared->space, new_dims) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to modify size of data space")
+
+ /* Mark the space as dirty, for later writing to the file */
+ if(H5F_INTENT(dset->oloc.file) & H5F_ACC_RDWR)
+ if(H5D__mark(dset, dxpl_id, H5D_MARK_SPACE) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "unable to mark dataspace as dirty")
+ } /* end if */
+
+ /* If we did not change the VDS dimensions, there is nothing more to update
+ */
+ if(changed || (!storage->init && (storage->view == H5D_VDS_FIRST_MISSING))) {
+ /* Iterate over mappings again to update source selections and virtual
+ * mapping extents */
+ for(i = 0; i < storage->list_nalloc; i++) {
+ /* If there is an unlimited dimension, we are setting extent by the
+ * minimum of mappings, and the virtual extent in the unlimited
+ * dimension has changed since the last time the VDS extent/mapping
+ * was updated, we must adjust the selections */
+ if((storage->list[i].unlim_dim_virtual >= 0)
+ && (storage->view == H5D_VDS_FIRST_MISSING)
+ && (new_dims[storage->list[i].unlim_dim_virtual]
+ != storage->list[i].unlim_extent_virtual)) {
+ /* Check for "printf" style mapping */
+ if(storage->list[i].unlim_dim_source >= 0) {
+ /* Non-printf mapping */
+ /* Close previous clipped virtual selection, if any */
+ if(storage->list[i].source_dset.clipped_virtual_select) {
+ HDassert(storage->list[i].source_dset.clipped_virtual_select
+ != storage->list[i].source_dset.virtual_select);
+ if(H5S_close(storage->list[i].source_dset.clipped_virtual_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped virtual dataspace")
+ } /* end if */
+
+ /* Copy virtual selection */
+ if(NULL == (storage->list[i].source_dset.clipped_virtual_select = H5S_copy(storage->list[i].source_dset.virtual_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy virtual selection")
+
+ /* Clip space to virtual extent */
+ if(H5S_hyper_clip_unlim(storage->list[i].source_dset.clipped_virtual_select, new_dims[storage->list[i].unlim_dim_source]))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "failed to clip unlimited selection")
+
+ /* Get size that source selection will be clipped to to
+ * match size of virtual selection */
+ clip_size = H5S_hyper_get_clip_extent(storage->list[i].source_select, storage->list[i].source_dset.clipped_virtual_select, FALSE);
+
+ /* Check if the clip size changed */
+ if(clip_size != storage->list[i].clip_size_source) {
+ /* Close previous clipped source selection, if any */
+ if(storage->list[i].source_dset.clipped_source_select) {
+ HDassert(storage->list[i].source_dset.clipped_source_select
+ != storage->list[i].source_select);
+ if(H5S_close(storage->list[i].source_dset.clipped_source_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped source dataspace")
+ } /* end if */
+
+ /* Copy source selection */
+ if(NULL == (storage->list[i].source_dset.clipped_source_select = H5S_copy(storage->list[i].source_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy source selection")
+
+ /* Clip source selection */
+ if(H5S_hyper_clip_unlim(storage->list[i].source_dset.clipped_source_select, clip_size))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "failed to clip unlimited selection")
+
+ /* Update cached value clip_size_source */
+ storage->list[i].clip_size_source = clip_size;
+ } /* end if */
+ } /* end if */
+ else {
+ /* printf mapping */
+ hsize_t first_inc_block;
+ hbool_t partial_block;
+
+ /* Get index of first incomplete block in virtual
+ * selection */
+ first_inc_block = H5S_hyper_get_first_inc_block(storage->list[i].source_dset.virtual_select, new_dims[storage->list[i].unlim_dim_virtual], &partial_block);
+
+ /* Iterate over sub datasets */
+ for(j = 0; j < storage->list[i].sub_dset_nalloc; j++) {
+ /* Close previous clipped source selection, if any */
+ if(storage->list[i].sub_dset[j].clipped_source_select
+ != storage->list[i].source_select) {
+ if(storage->list[i].sub_dset[j].clipped_source_select)
+ if(H5S_close(storage->list[i].sub_dset[j].clipped_source_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped source dataspace")
+
+ /* Initialize clipped source selection to point to
+ * base source selection */
+ storage->list[i].sub_dset[j].clipped_source_select = storage->list[i].source_select;
+ } /* end if */
+
+ /* Close previous clipped virtual selection, if any */
+ if(storage->list[i].sub_dset[j].clipped_virtual_select
+ != storage->list[i].sub_dset[j].virtual_select) {
+ if(storage->list[i].sub_dset[j].clipped_virtual_select)
+ if(H5S_close(storage->list[i].sub_dset[j].clipped_virtual_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped virtual dataspace")
+
+ /* Initialize clipped virtual selection to point to
+ * unclipped virtual selection */
+ storage->list[i].sub_dset[j].clipped_virtual_select = storage->list[i].sub_dset[j].virtual_select;
+ } /* end if */
+
+ /* Only initialize clipped selections if it is a
+ * complete block, for incomplete blocks defer to
+ * H5D__virtual_pre_io() as we may not have a valid
+ * source extent here. For unused blocks we will never
+ * need clipped selections (until the extent is
+ * recalculated in this function). */
+ if(j >= (size_t)first_inc_block) {
+ /* Clear clipped source and virtual selections */
+ storage->list[i].sub_dset[j].clipped_source_select = NULL;
+ storage->list[i].sub_dset[j].clipped_virtual_select = NULL;
+ } /* end if */
+ } /* end for */
+ } /* end else */
+
+ /* Update cached value unlim_extent_virtual */
+ storage->list[i].unlim_extent_virtual = new_dims[storage->list[i].unlim_dim_virtual];
+ } /* end if */
+
+ /* Update top level virtual_select and clipped_virtual_select
+ * extents */
+ if(H5S_set_extent(storage->list[i].source_dset.virtual_select, new_dims) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to modify size of data space")
+ if((storage->list[i].source_dset.clipped_virtual_select
+ != storage->list[i].source_dset.virtual_select)
+ && storage->list[i].source_dset.clipped_virtual_select)
+ if(H5S_set_extent(storage->list[i].source_dset.clipped_virtual_select, new_dims) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to modify size of data space")
+
+ /* Update sub dataset virtual_select and clipped_virtual_select
+ * extents */
+ for(j = 0; j < storage->list[i].sub_dset_nalloc; j++)
+ if(storage->list[i].sub_dset[j].virtual_select) {
+ if(H5S_set_extent(storage->list[i].sub_dset[j].virtual_select, new_dims) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to modify size of data space")
+ if((storage->list[i].sub_dset[j].clipped_virtual_select
+ != storage->list[i].sub_dset[j].virtual_select)
+ && storage->list[i].sub_dset[j].clipped_virtual_select)
+ if(H5S_set_extent(storage->list[i].sub_dset[j].clipped_virtual_select, new_dims) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to modify size of data space")
+ } /* end if */
+ else
+ HDassert(!storage->list[i].sub_dset[j].clipped_virtual_select);
+ } /* end for */
+ } /* end if */
+
+ /* Mark layout as fully initialized */
+ storage->init = TRUE;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_set_extent_unlim() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_init_all
+ *
+ * Purpose: Finishes initializing layout in preparation for I/O.
+ * Only necessary if H5D__virtual_set_extent_unlim() has not
+ * been called yet. Initializes clipped_virtual_select and
+ * clipped_source_select for all mappings in this layout.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * August 10, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_init_all(const H5D_t *dset, hid_t dxpl_id)
+{
+ H5O_storage_virtual_t *storage;
+ hsize_t virtual_dims[H5S_MAX_RANK];
+ hsize_t source_dims[H5S_MAX_RANK];
+ hsize_t clip_size;
+ size_t i, j;
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(dset);
+ HDassert(dset->shared->layout.storage.type == H5D_VIRTUAL);
+ storage = &dset->shared->layout.storage.u.virt;
+ HDassert((storage->view == H5D_VDS_FIRST_MISSING) || (storage->view == H5D_VDS_LAST_AVAILABLE));
+
+ /* Get current VDS dimensions */
+ if(H5S_get_simple_extent_dims(dset->shared->space, virtual_dims, NULL) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get VDS dimensions")
+
+ /* Iterate over mappings */
+ for(i = 0; i < storage->list_nalloc; i++)
+ /* Check for unlimited dimension */
+ if(storage->list[i].unlim_dim_virtual >= 0) {
+ /* Check for "printf" source dataset resolution */
+ if(storage->list[i].unlim_dim_source >= 0 ) {
+ /* Non-printf mapping */
+ /* Open source dataset */
+ if(!storage->list[i].source_dset.dset)
+ if(H5D__virtual_open_source_dset(dset, &storage->list[i], &storage->list[i].source_dset, dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "unable to open source dataset")
+
+ /* Check if source dataset is open */
+ if(storage->list[i].source_dset.dset) {
+ /* Retrieve current source dataset extent and patch mapping
+ */
+ if(H5S_extent_copy(storage->list[i].source_select, storage->list[i].source_dset.dset->shared->space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "can't copy source dataspace extent")
+
+ /* Get source space dimenstions */
+ if(H5S_get_simple_extent_dims(storage->list[i].source_select, source_dims, NULL) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get source space dimensions")
+
+ /* Get size that source selection would be clipped to to
+ * match size of virtual selection */
+ clip_size = H5S_hyper_get_clip_extent_match(storage->list[i].source_select, storage->list[i].source_dset.virtual_select, virtual_dims[storage->list[i].unlim_dim_virtual], FALSE);
+
+ /* Close previous clipped virtual selection, if any */
+ if(storage->list[i].source_dset.clipped_virtual_select) {
+ HDassert(storage->list[i].source_dset.clipped_virtual_select
+ != storage->list[i].source_dset.virtual_select);
+ if(H5S_close(storage->list[i].source_dset.clipped_virtual_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped virtual dataspace")
+ } /* end if */
+
+ /* Copy virtual selection */
+ if(NULL == (storage->list[i].source_dset.clipped_virtual_select = H5S_copy(storage->list[i].source_dset.virtual_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy virtual selection")
+
+ /* Close previous clipped source selection, if any */
+ if(storage->list[i].source_dset.clipped_source_select) {
+ HDassert(storage->list[i].source_dset.clipped_source_select
+ != storage->list[i].source_select);
+ if(H5S_close(storage->list[i].source_dset.clipped_source_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped source dataspace")
+ } /* end if */
+
+ /* Copy source selection */
+ if(NULL == (storage->list[i].source_dset.clipped_source_select = H5S_copy(storage->list[i].source_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy source selection")
+
+ /* Check if the clip size is within the current extent of
+ * the source dataset */
+ if(clip_size <= source_dims[storage->list[i].unlim_dim_source]) {
+ /* Clip virtual selection to extent */
+ if(H5S_hyper_clip_unlim(storage->list[i].source_dset.clipped_virtual_select, virtual_dims[storage->list[i].unlim_dim_virtual]))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "failed to clip unlimited selection")
+
+ /* Clip source selection to clip_size */
+ if(H5S_hyper_clip_unlim(storage->list[i].source_dset.clipped_source_select, clip_size))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "failed to clip unlimited selection")
+ } /* end if */
+ else {
+ /* Get size that virtual selection will be clipped to to
+ * match size of source selection within source extent
+ */
+ clip_size = H5S_hyper_get_clip_extent_match(storage->list[i].source_dset.virtual_select, storage->list[i].source_select, source_dims[storage->list[i].unlim_dim_source], FALSE);
+
+ /* Clip virtual selection to clip_size */
+ if(H5S_hyper_clip_unlim(storage->list[i].source_dset.clipped_virtual_select, clip_size))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "failed to clip unlimited selection")
+
+ /* Clip source selection to extent */
+ if(H5S_hyper_clip_unlim(storage->list[i].source_dset.clipped_source_select, source_dims[storage->list[i].unlim_dim_source]))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "failed to clip unlimited selection")
+ } /* end else */
+ } /* end if */
+ else {
+ HDassert(!storage->list[i].source_dset.clipped_virtual_select);
+ HDassert(!storage->list[i].source_dset.clipped_source_select);
+ } /* end else */
+ } /* end if */
+ else {
+ /* printf mapping */
+ size_t sub_dset_max;
+ hbool_t partial_block;
+
+ /* Get number of sub-source datasets in current extent */
+ sub_dset_max = (size_t)H5S_hyper_get_first_inc_block(storage->list[i].source_dset.virtual_select, virtual_dims[storage->list[i].unlim_dim_virtual], &partial_block);
+ if(partial_block)
+ sub_dset_max++;
+
+ /* Allocate or grow the sub_dset array if necessary */
+ if(!storage->list[i].sub_dset) {
+ /* Allocate sub_dset array */
+ if(NULL == (storage->list[i].sub_dset = (H5O_storage_virtual_srcdset_t *)H5MM_calloc(sub_dset_max * sizeof(H5O_storage_virtual_srcdset_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to allocate sub dataset array")
+
+ /* Update sub_dset_nalloc */
+ storage->list[i].sub_dset_nalloc = sub_dset_max;
+ } /* end if */
+ else if(sub_dset_max > storage->list[i].sub_dset_nalloc) {
+ H5O_storage_virtual_srcdset_t *tmp_sub_dset;
+
+ /* Extend sub_dset array */
+ if(NULL == (tmp_sub_dset = (H5O_storage_virtual_srcdset_t *)H5MM_realloc(storage->list[i].sub_dset, sub_dset_max * sizeof(H5O_storage_virtual_srcdset_t))))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "unable to extend sub dataset array")
+ storage->list[i].sub_dset = tmp_sub_dset;
+
+ /* Clear new space in sub_dset */
+ (void)HDmemset(&storage->list[i].sub_dset[storage->list[i].sub_dset_nalloc], 0, (sub_dset_max - storage->list[i].sub_dset_nalloc) * sizeof(H5O_storage_virtual_srcdset_t));
+
+ /* Update sub_dset_nalloc */
+ storage->list[i].sub_dset_nalloc = sub_dset_max;
+ } /* end if */
+
+ /* Iterate over sub dsets */
+ for(j = 0; j < sub_dset_max; j++) {
+ /* Resolve file name */
+ if(!storage->list[i].sub_dset[j].file_name)
+ if(H5D__virtual_build_source_name(storage->list[i].source_file_name, storage->list[i].parsed_source_file_name, storage->list[i].psfn_static_strlen, storage->list[i].psfn_nsubs, j, &storage->list[i].sub_dset[j].file_name) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to build source file name")
+
+ /* Resolve dset name */
+ if(!storage->list[i].sub_dset[j].dset_name)
+ if(H5D__virtual_build_source_name(storage->list[i].source_dset_name, storage->list[i].parsed_source_dset_name, storage->list[i].psdn_static_strlen, storage->list[i].psdn_nsubs, j, &storage->list[i].sub_dset[j].dset_name) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to build source dataset name")
+
+ /* Resolve virtual selection for block */
+ if(!storage->list[i].sub_dset[j].virtual_select)
+ if(NULL == (storage->list[i].sub_dset[j].virtual_select = H5S_hyper_get_unlim_block(storage->list[i].source_dset.virtual_select, j)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get block in unlimited selection")
+
+ /* Close previous clipped source selection, if any */
+ if(storage->list[i].sub_dset[j].clipped_source_select
+ != storage->list[i].source_select) {
+ if(storage->list[i].sub_dset[j].clipped_source_select)
+ if(H5S_close(storage->list[i].sub_dset[j].clipped_source_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped source dataspace")
+
+ /* Initialize clipped source selection to point to base
+ * source selection */
+ storage->list[i].sub_dset[j].clipped_source_select = storage->list[i].source_select;
+ } /* end if */
+
+ /* Close previous clipped virtual selection, if any */
+ if(storage->list[i].sub_dset[j].clipped_virtual_select
+ != storage->list[i].sub_dset[j].virtual_select) {
+ if(storage->list[i].sub_dset[j].clipped_virtual_select)
+ if(H5S_close(storage->list[i].sub_dset[j].clipped_virtual_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release clipped virtual dataspace")
+
+ /* Initialize clipped virtual selection to point to
+ * unclipped virtual selection */
+ storage->list[i].sub_dset[j].clipped_virtual_select = storage->list[i].sub_dset[j].virtual_select;
+ } /* end if */
+
+ /* Clear clipped selections if this is a partial block,
+ * defer calculation of real clipped selections to
+ * H5D__virtual_pre_io() as we may not have a valid source
+ * extent here */
+ if((j == (sub_dset_max - 1)) && partial_block) {
+ /* Clear clipped source and virtual selections */
+ storage->list[i].sub_dset[j].clipped_source_select = NULL;
+ storage->list[i].sub_dset[j].clipped_virtual_select = NULL;
+ } /* end else */
+ /* Note we do not need to open the source file, this will
+ * happen later in H5D__virtual_pre_io() */
+ } /* end for */
+
+ /* Update sub_dset_nused */
+ storage->list[i].sub_dset_nused = sub_dset_max;
+ } /* end else */
+ } /* end if */
+ else {
+ /* Limited mapping, just make sure the clipped selections were
+ * already set. Again, no need to open the source file. */
+ HDassert(storage->list[i].source_dset.clipped_virtual_select);
+ HDassert(storage->list[i].source_dset.clipped_source_select);
+ } /* end else */
+
+ /* Mark layout as fully initialized */
+ storage->init = TRUE;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_init_all() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_init
+ *
+ * Purpose: Initialize the virtual layout information for a dataset.
+ * This is called when the dataset is initialized.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * Thursday, April 30, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5D__virtual_init(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, const H5D_t *dset,
+ hid_t dapl_id)
+{
+ H5O_storage_virtual_t *storage; /* Convenience pointer */
+ H5P_genplist_t *dapl; /* Data access property list object pointer */
+ hssize_t old_offset[H5O_LAYOUT_NDIMS]; /* Old selection offset (unused) */
+ size_t i; /* Local index variables */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_PACKAGE
+
+ /* Sanity check */
+ HDassert(dset);
+ storage = &dset->shared->layout.storage.u.virt;
+ HDassert(storage->list || (storage->list_nused == 0));
+
+ /* Check that the dimensions of the VDS are large enough */
+ if(H5D_virtual_check_min_dims(dset) < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "virtual dataset dimensions not large enough to contain all limited dimensions in all selections")
+
+ /* Patch the virtual selection dataspaces. Note we always patch the space
+ * status because this layout could be from an old version held in the
+ * object header message code. We cannot update that held message because
+ * the layout message is constant, so just overwrite the values here (and
+ * invalidate other fields by setting storage->init to FALSE below). Also
+ * remove offset from selections. We only have to update
+ * source_space_status and virtual_space_status because others will be based
+ * on these and should therefore already have been normalized. */
+ for(i = 0; i < storage->list_nused; i++) {
+ HDassert(storage->list[i].sub_dset_nalloc == 0);
+
+ /* Patch extent */
+ if(H5S_extent_copy(storage->list[i].source_dset.virtual_select, dset->shared->space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "can't copy virtual dataspace extent")
+ storage->list[i].virtual_space_status = H5O_VIRTUAL_STATUS_CORRECT;
+
+ /* Mark source extent as invalid */
+ storage->list[i].source_space_status = H5O_VIRTUAL_STATUS_INVALID;
+
+ /* Normalize offsets, toss out old offset values */
+ if(H5S_hyper_normalize_offset(storage->list[i].source_dset.virtual_select, old_offset) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_BADSELECT, FAIL, "unable to normalize dataspace by offset")
+ if(H5S_hyper_normalize_offset(storage->list[i].source_select, old_offset) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_BADSELECT, FAIL, "unable to normalize dataspace by offset")
+ } /* end for */
+
+ /* Get dataset access property list */
+ if(NULL == (dapl = (H5P_genplist_t *)H5I_object(dapl_id)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for dapl ID")
+
+ /* Get view option */
+ if(H5P_get(dapl, H5D_ACS_VDS_VIEW_NAME, &storage->view) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get virtual view option")
+
+ /* Get printf gap if view is H5D_VDS_LAST_AVAILABLE, otherwise set to 0 */
+ if(storage->view == H5D_VDS_LAST_AVAILABLE) {
+ if(H5P_get(dapl, H5D_ACS_VDS_PRINTF_GAP_NAME, &storage->printf_gap) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get virtual printf gap")
+ } /* end if */
+ else
+ storage->printf_gap = (hsize_t)0;
+
+ /* Retrieve VDS file FAPL to layout */
+ if((storage->source_fapl = H5F_get_access_plist(f, FALSE)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get fapl")
+
+ /* Copy DAPL to layout */
+ if((storage->source_dapl = H5P_copy_plist(dapl, FALSE)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "can't copy dapl")
+
+ /* Mark layout as not fully initialized (must be done prior to I/O for
+ * unlimited/printf selections) */
+ storage->init = FALSE;
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_init() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_is_space_alloc
+ *
+ * Purpose: Query if space is allocated for layout
+ *
+ * Return: TRUE if space is allocated
+ * FALSE if it is not
+ * Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * February 6, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+hbool_t
+H5D__virtual_is_space_alloc(const H5O_storage_t H5_ATTR_UNUSED *storage)
+{
+ hbool_t ret_value; /* Return value */
+
+ FUNC_ENTER_PACKAGE_NOERR
+
+ /* Just return TRUE, since the global heap object containing the mappings is
+ * created when the layout message is encoded, and nothing else needs to be
+ * allocated for virtual datasets. This also ensures that the library never
+ * assumes (falsely) that no data is present in the dataset, causing errors.
+ */
+ ret_value = TRUE;
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_is_space_alloc() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_pre_io
+ *
+ * Purpose: Project all virtual mappings onto mem_space, with the
+ * results stored in projected_mem_space for each mapping.
+ * Opens all source datasets if possible. The total number
+ * of elements is stored in tot_nelmts.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * June 3, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_pre_io(H5D_io_info_t *io_info,
+ H5O_storage_virtual_t *storage, const H5S_t *file_space,
+ const H5S_t *mem_space, hsize_t *tot_nelmts)
+{
+ hssize_t select_nelmts; /* Number of elements in selection */
+ hsize_t bounds_start[H5S_MAX_RANK]; /* Selection bounds start */
+ hsize_t bounds_end[H5S_MAX_RANK]; /* Selection bounds end */
+ int rank;
+ hbool_t bounds_init = FALSE; /* Whether bounds_start, bounds_end, and rank are valid */
+ size_t i, j, k; /* Local index variables */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(storage);
+ HDassert(mem_space);
+ HDassert(file_space);
+ HDassert(tot_nelmts);
+
+ /* Initialize layout if necessary */
+ if(!storage->init)
+ if(H5D__virtual_init_all(io_info->dset, io_info->dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't initialize virtual layout")
+
+ /* Initialize tot_nelmts */
+ *tot_nelmts = 0;
+
+ /* Iterate over mappings */
+ for(i = 0; i < storage->list_nused; i++) {
+ /* Sanity check that the virtual space has been patched by now */
+ HDassert(storage->list[i].virtual_space_status == H5O_VIRTUAL_STATUS_CORRECT);
+
+ /* Check for "printf" source dataset resolution */
+ if(storage->list[i].psfn_nsubs || storage->list[i].psdn_nsubs) {
+ hbool_t partial_block;
+
+ HDassert(storage->list[i].unlim_dim_virtual >= 0);
+
+ /* Get selection bounds if necessary */
+ if(!bounds_init) {
+ /* Get rank of VDS */
+ if((rank = H5S_GET_EXTENT_NDIMS(io_info->dset->shared->space)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get number of dimensions")
+
+ /* Get selection bounds */
+ if(H5S_SELECT_BOUNDS(file_space, bounds_start, bounds_end) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get selection bounds")
+
+ /* Adjust bounds_end to represent the extent just enclosing them
+ * (add 1) */
+ for(j = 0; j < (size_t)rank; j++)
+ bounds_end[j]++;
+
+ /* Bounds are now initialized */
+ bounds_init = TRUE;
+ } /* end if */
+
+ /* Get index of first block in virtual selection */
+ storage->list[i].sub_dset_io_start = (size_t)H5S_hyper_get_first_inc_block(storage->list[i].source_dset.virtual_select, bounds_start[storage->list[i].unlim_dim_virtual], NULL);
+
+ /* Get index of first block outside of virtual selection */
+ storage->list[i].sub_dset_io_end = (size_t)H5S_hyper_get_first_inc_block(storage->list[i].source_dset.virtual_select, bounds_end[storage->list[i].unlim_dim_virtual], &partial_block);
+ if(partial_block)
+ storage->list[i].sub_dset_io_end++;
+ if(storage->list[i].sub_dset_io_end > storage->list[i].sub_dset_nused)
+ storage->list[i].sub_dset_io_end = storage->list[i].sub_dset_nused;
+
+ /* Iterate over sub-source dsets */
+ for(j = storage->list[i].sub_dset_io_start;
+ j < storage->list[i].sub_dset_io_end; j++) {
+ /* Check for clipped virtual selection */
+ if(!storage->list[i].sub_dset[j].clipped_virtual_select) {
+ hsize_t start[H5S_MAX_RANK];
+ /* This should only be NULL if this is a partial block */
+ HDassert((j == (storage->list[i].sub_dset_io_end - 1))
+ && partial_block);
+
+ /* If the source space status is not correct, we must try to
+ * open the source dataset to patch it */
+ if(storage->list[i].source_space_status != H5O_VIRTUAL_STATUS_CORRECT) {
+ HDassert(!storage->list[i].sub_dset[j].dset);
+ if(H5D__virtual_open_source_dset(io_info->dset, &storage->list[i], &storage->list[i].sub_dset[j], io_info->dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "unable to open source dataset")
+ } /* end if */
+
+ /* If we obtained a valid source space, we must create
+ * clipped source and virtual selections, otherwise we
+ * cannot do this and we will leave them NULL. This doesn't
+ * hurt anything because we can't do I/O because the dataset
+ * must not have been found. */
+ if(storage->list[i].source_space_status == H5O_VIRTUAL_STATUS_CORRECT) {
+ hsize_t tmp_dims[H5S_MAX_RANK];
+ hsize_t vbounds_end[H5S_MAX_RANK];
+
+ /* Get bounds of virtual selection */
+ if(H5S_SELECT_BOUNDS(storage->list[i].sub_dset[j].virtual_select, tmp_dims, vbounds_end) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get selection bounds")
+
+ HDassert(bounds_init);
+
+ /* Convert bounds to extent (add 1) */
+ for(k = 0; k < (size_t)rank; k++)
+ vbounds_end[k]++;
+
+ /* Temporarily set extent of virtual selection to bounds */
+ if(H5S_set_extent(storage->list[i].sub_dset[j].virtual_select, vbounds_end) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to modify size of data space")
+
+ /* Get current VDS dimensions */
+ if(H5S_get_simple_extent_dims(io_info->dset->shared->space, tmp_dims, NULL) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get VDS dimensions")
+
+ /* Copy virtual selection */
+ if(NULL == (storage->list[i].sub_dset[j].clipped_virtual_select = H5S_copy(storage->list[i].sub_dset[j].virtual_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy virtual selection")
+
+ /* Clip virtual selection to real virtual extent */
+ (void)HDmemset(start, 0, sizeof(start));
+ if(H5S_select_hyperslab(storage->list[i].sub_dset[j].clipped_virtual_select, H5S_SELECT_AND, start, NULL, tmp_dims, NULL) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSELECT, FAIL, "unable to clip hyperslab")
+
+ /* Project intersection of virtual space and clipped
+ * virtual space onto source space (create
+ * clipped_source_select) */
+ if(H5S_select_project_intersection(storage->list[i].sub_dset[j].virtual_select, storage->list[i].source_select, storage->list[i].sub_dset[j].clipped_virtual_select, &storage->list[i].sub_dset[j].clipped_source_select) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "can't project virtual intersection onto memory space")
+
+ /* Set extents of virtual_select and
+ * clipped_virtual_select to virtual extent */
+ if(H5S_set_extent(storage->list[i].sub_dset[j].virtual_select, tmp_dims) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to modify size of data space")
+ if(H5S_set_extent(storage->list[i].sub_dset[j].clipped_virtual_select, tmp_dims) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to modify size of data space")
+ } /* end if */
+ } /* end if */
+
+ /* Only continue if we managed to obtain a
+ * clipped_virtual_select */
+ if(storage->list[i].sub_dset[j].clipped_virtual_select) {
+ /* Project intersection of file space and mapping virtual space
+ * onto memory space */
+ if(H5S_select_project_intersection(file_space, mem_space, storage->list[i].sub_dset[j].clipped_virtual_select, &storage->list[i].sub_dset[j].projected_mem_space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "can't project virtual intersection onto memory space")
+
+ /* Check number of elements selected */
+ if((select_nelmts = (hssize_t)H5S_GET_SELECT_NPOINTS(storage->list[i].sub_dset[j].projected_mem_space)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "unable to get number of elements in selection")
+
+ /* Check if anything is selected */
+ if(select_nelmts > (hssize_t)0) {
+ /* Open source dataset */
+ if(!storage->list[i].sub_dset[j].dset)
+ /* Try to open dataset */
+ if(H5D__virtual_open_source_dset(io_info->dset, &storage->list[i], &storage->list[i].sub_dset[j], io_info->dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "unable to open source dataset")
+
+ /* If the source dataset is not open, mark the selected
+ * elements as zero so projected_mem_space is freed */
+ if(!storage->list[i].sub_dset[j].dset)
+ select_nelmts = (hssize_t)0;
+ } /* end if */
+
+ /* If there are not elements selected in this mapping, free
+ * projected_mem_space, otherwise update tot_nelmts */
+ if(select_nelmts == (hssize_t)0) {
+ if(H5S_close(storage->list[i].sub_dset[j].projected_mem_space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't close projected memory space")
+ storage->list[i].sub_dset[j].projected_mem_space = NULL;
+ } /* end if */
+ else
+ *tot_nelmts += (hsize_t)select_nelmts;
+ } /* end if */
+ } /* end for */
+ } /* end if */
+ else {
+ if(storage->list[i].source_dset.clipped_virtual_select) {
+ /* Project intersection of file space and mapping virtual space onto
+ * memory space */
+ if(H5S_select_project_intersection(file_space, mem_space, storage->list[i].source_dset.clipped_virtual_select, &storage->list[i].source_dset.projected_mem_space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "can't project virtual intersection onto memory space")
+
+ /* Check number of elements selected, add to tot_nelmts */
+ if((select_nelmts = (hssize_t)H5S_GET_SELECT_NPOINTS(storage->list[i].source_dset.projected_mem_space)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "unable to get number of elements in selection")
+
+ /* Check if anything is selected */
+ if(select_nelmts > (hssize_t)0) {
+ /* Open source dataset */
+ if(!storage->list[i].source_dset.dset)
+ /* Try to open dataset */
+ if(H5D__virtual_open_source_dset(io_info->dset, &storage->list[i], &storage->list[i].source_dset, io_info->dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "unable to open source dataset")
+
+ /* If the source dataset is not open, mark the selected elements
+ * as zero so projected_mem_space is freed */
+ if(!storage->list[i].source_dset.dset)
+ select_nelmts = (hssize_t)0;
+ } /* end if */
+
+ /* If there are not elements selected in this mapping, free
+ * projected_mem_space, otherwise update tot_nelmts */
+ if(select_nelmts == (hssize_t)0) {
+ if(H5S_close(storage->list[i].source_dset.projected_mem_space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't close projected memory space")
+ storage->list[i].source_dset.projected_mem_space = NULL;
+ } /* end if */
+ else
+ *tot_nelmts += (hsize_t)select_nelmts;
+ } /* end if */
+ else {
+ /* If there is no clipped_dim_virtual, this must be an unlimited
+ * selection whose dataset was not found in the last call to
+ * H5Dget_space(). Do not attempt to open it as this might
+ * affect the extent and we are not going to recalculate it
+ * here. */
+ HDassert(storage->list[i].unlim_dim_virtual >= 0);
+ HDassert(!storage->list[i].source_dset.dset);
+ } /* end else */
+ } /* end else */
+ } /* end for */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_pre_io() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_post_io
+ *
+ * Purpose: Frees memory structures allocated by H5D__virtual_pre_io.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * June 4, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_post_io(H5O_storage_virtual_t *storage)
+{
+ size_t i, j; /* Local index variables */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(storage);
+
+ /* Iterate over mappings */
+ for(i = 0; i < storage->list_nused; i++)
+ /* Check for "printf" source dataset resolution */
+ if(storage->list[i].psfn_nsubs || storage->list[i].psdn_nsubs) {
+ /* Iterate over sub-source dsets */
+ for(j = storage->list[i].sub_dset_io_start;
+ j < storage->list[i].sub_dset_io_end; j++)
+ /* Close projected memory space */
+ if(storage->list[i].sub_dset[j].projected_mem_space) {
+ if(H5S_close(storage->list[i].sub_dset[j].projected_mem_space) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't close temporary space")
+ storage->list[i].sub_dset[j].projected_mem_space = NULL;
+ } /* end if */
+ } /* end if */
+ else
+ /* Close projected memory space */
+ if(storage->list[i].source_dset.projected_mem_space) {
+ if(H5S_close(storage->list[i].source_dset.projected_mem_space) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't close temporary space")
+ storage->list[i].source_dset.projected_mem_space = NULL;
+ } /* end if */
+
+ /* Note the lack of a done: label. This is because there are no HGOTO_ERROR
+ * calls. If one is added, a done: label must also be added */
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_post_io() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_read_one
+ *
+ * Purpose: Read from a singe source dataset in a virtual dataset.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * May 15, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_read_one(H5D_io_info_t *io_info, const H5D_type_info_t *type_info,
+ const H5S_t *file_space, H5O_storage_virtual_srcdset_t *source_dset)
+{
+ H5S_t *projected_src_space = NULL; /* File space for selection in a single source dataset */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ HDassert(source_dset);
+
+ /* Only perform I/O if there is a projected memory space, otherwise there
+ * were no elements in the projection or the source dataset could not be
+ * opened */
+ if(source_dset->projected_mem_space) {
+ HDassert(source_dset->dset);
+ HDassert(source_dset->clipped_source_select);
+
+ /* Project intersection of file space and mapping virtual space onto
+ * mapping source space */
+ if(H5S_select_project_intersection(source_dset->clipped_virtual_select, source_dset->clipped_source_select, file_space, &projected_src_space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "can't project virtual intersection onto source space")
+
+ /* Perform read on source dataset */
+ if(H5D__read(source_dset->dset, type_info->dst_type_id, source_dset->projected_mem_space, projected_src_space, io_info->dxpl_id, io_info->u.rbuf) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read source dataset")
+
+ /* Close projected_src_space */
+ if(H5S_close(projected_src_space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't close projected source space")
+ projected_src_space = NULL;
+ } /* end if */
+
+done:
+ /* Release allocated resources on failure */
+ if(projected_src_space) {
+ HDassert(ret_value < 0);
+ if(H5S_close(projected_src_space) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't close projected source space")
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_read_one() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_read
+ *
+ * Purpose: Read from a virtual dataset.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * February 6, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space,
+ H5D_chunk_map_t H5_ATTR_UNUSED *fm)
+{
+ H5O_storage_virtual_t *storage; /* Convenient pointer into layout struct */
+ hsize_t tot_nelmts; /* Total number of elements mapped to mem_space */
+ H5S_t *fill_space = NULL; /* Space to fill with fill value */
+ size_t i, j; /* Local index variables */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(io_info);
+ HDassert(io_info->u.rbuf);
+ HDassert(type_info);
+ HDassert(mem_space);
+ HDassert(file_space);
+
+ storage = &io_info->dset->shared->layout.storage.u.virt;
+ HDassert((storage->view == H5D_VDS_FIRST_MISSING) || (storage->view == H5D_VDS_LAST_AVAILABLE));
+
+#ifdef H5_HAVE_PARALLEL
+ /* Parallel reads are not supported (yet) */
+ if(H5F_HAS_FEATURE(io_info->dset->oloc.file, H5FD_FEAT_HAS_MPI))
+ HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "parallel reads not supported on virtual datasets")
+#endif /* H5_HAVE_PARALLEL */
+
+ /* Prepare for I/O operation */
+ if(H5D__virtual_pre_io(io_info, storage, file_space, mem_space, &tot_nelmts) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "unable to prepare for I/O operation")
+
+ /* Iterate over mappings */
+ for(i = 0; i < storage->list_nused; i++) {
+ /* Sanity check that the virtual space has been patched by now */
+ HDassert(storage->list[i].virtual_space_status == H5O_VIRTUAL_STATUS_CORRECT);
+
+ /* Check for "printf" source dataset resolution */
+ if(storage->list[i].psfn_nsubs || storage->list[i].psdn_nsubs) {
+ /* Iterate over sub-source dsets */
+ for(j = storage->list[i].sub_dset_io_start;
+ j < storage->list[i].sub_dset_io_end; j++)
+ if(H5D__virtual_read_one(io_info, type_info, file_space, &storage->list[i].sub_dset[j]) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "unable to read source dataset")
+ } /* end if */
+ else
+ /* Read from source dataset */
+ if(H5D__virtual_read_one(io_info, type_info, file_space, &storage->list[i].source_dset) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "unable to read source dataset")
+ } /* end for */
+
+ /* Fill unmapped part of buffer with fill value */
+ if(tot_nelmts < nelmts) {
+ H5D_fill_value_t fill_status; /* Fill value status */
+
+ /* Check the fill value status */
+ if(H5P_is_fill_value_defined(&io_info->dset->shared->dcpl_cache.fill, &fill_status) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't tell if fill value defined")
+
+ /* Always write fill value to memory buffer unless it is undefined */
+ if(fill_status != H5D_FILL_VALUE_UNDEFINED) {
+ /* Start with fill space equal to memory space */
+ if(NULL == (fill_space = H5S_copy(mem_space, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy memory selection")
+
+ /* Iterate over mappings */
+ for(i = 0; i < storage->list_nused; i++)
+ /* Check for "printf" source dataset resolution */
+ if(storage->list[i].psfn_nsubs || storage->list[i].psdn_nsubs) {
+ /* Iterate over sub-source dsets */
+ for(j = storage->list[i].sub_dset_io_start;
+ j < storage->list[i].sub_dset_io_end; j++)
+ if(storage->list[i].sub_dset[j].projected_mem_space)
+ if(H5S_select_subtract(fill_space, storage->list[i].sub_dset[j].projected_mem_space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "unable to clip fill selection")
+ } /* end if */
+ else
+ if(storage->list[i].source_dset.projected_mem_space)
+ /* Subtract projected memory space from fill space */
+ if(H5S_select_subtract(fill_space, storage->list[i].source_dset.projected_mem_space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "unable to clip fill selection")
+
+ /* Write fill values to memory buffer */
+ if(H5D__fill(io_info->dset->shared->dcpl_cache.fill.buf, io_info->dset->shared->type, io_info->u.rbuf, type_info->mem_type, fill_space, io_info->dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "filling buf failed")
+
+#ifndef NDEBUG
+ /* Make sure the total number of elements written (including fill
+ * values) >= nelmts */
+ {
+ hssize_t select_nelmts; /* Number of elements in selection */
+
+ /* Get number of elements in fill dataspace */
+ if((select_nelmts = (hssize_t)H5S_GET_SELECT_NPOINTS(fill_space)) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "unable to get number of elements in selection")
+
+ /* Verify number of elements is correct. Note that since we
+ * don't check for overlap we can't assert that these are equal
+ */
+ HDassert((tot_nelmts + (hsize_t)select_nelmts) >= nelmts);
+ } /* end block */
+#endif /* NDEBUG */
+ } /* end if */
+ } /* end if */
+
+done:
+ /* Cleanup I/O operation */
+ if(H5D__virtual_post_io(storage) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't cleanup I/O operation")
+
+ /* Close fill space */
+ if(fill_space)
+ if(H5S_close(fill_space) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't close fill space")
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_read() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_write_one
+ *
+ * Purpose: Write to a singe source dataset in a virtual dataset.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * May 15, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_write_one(H5D_io_info_t *io_info, const H5D_type_info_t *type_info,
+ const H5S_t *file_space, H5O_storage_virtual_srcdset_t *source_dset)
+{
+ H5S_t *projected_src_space = NULL; /* File space for selection in a single source dataset */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ HDassert(source_dset);
+
+ /* Only perform I/O if there is a projected memory space, otherwise there
+ * were no elements in the projection */
+ if(source_dset->projected_mem_space) {
+ HDassert(source_dset->dset);
+ HDassert(source_dset->clipped_source_select);
+
+ /* In the future we may wish to extent this implementation to extend
+ * source datasets if a write to a virtual dataset goes past the current
+ * extent in the unlimited dimension. -NAF */
+ /* Project intersection of file space and mapping virtual space onto
+ * mapping source space */
+ if(H5S_select_project_intersection(source_dset->virtual_select, source_dset->clipped_source_select, file_space, &projected_src_space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "can't project virtual intersection onto source space")
+
+ /* Perform write on source dataset */
+ if(H5D__write(source_dset->dset, type_info->dst_type_id, source_dset->projected_mem_space, projected_src_space, io_info->dxpl_id, io_info->u.wbuf) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write to source dataset")
+
+ /* Close projected_src_space */
+ if(H5S_close(projected_src_space) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't close projected source space")
+ projected_src_space = NULL;
+ } /* end if */
+
+done:
+ /* Release allocated resources on failure */
+ if(projected_src_space) {
+ HDassert(ret_value < 0);
+ if(H5S_close(projected_src_space) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't close projected source space")
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_write_one() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_write
+ *
+ * Purpose: Write to a virtual dataset.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * February 6, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space,
+ H5D_chunk_map_t H5_ATTR_UNUSED *fm)
+{
+ H5O_storage_virtual_t *storage; /* Convenient pointer into layout struct */
+ hsize_t tot_nelmts; /* Total number of elements mapped to mem_space */
+ size_t i, j; /* Local index variables */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(io_info);
+ HDassert(io_info->u.wbuf);
+ HDassert(type_info);
+ HDassert(mem_space);
+ HDassert(file_space);
+
+ storage = &io_info->dset->shared->layout.storage.u.virt;
+ HDassert((storage->view == H5D_VDS_FIRST_MISSING) || (storage->view == H5D_VDS_LAST_AVAILABLE));
+
+#ifdef H5_HAVE_PARALLEL
+ /* Parallel writes are not supported (yet) */
+ if(H5F_HAS_FEATURE(io_info->dset->oloc.file, H5FD_FEAT_HAS_MPI))
+ HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "parallel writes not supported on virtual datasets")
+#endif /* H5_HAVE_PARALLEL */
+
+ /* Prepare for I/O operation */
+ if(H5D__virtual_pre_io(io_info, storage, file_space, mem_space, &tot_nelmts) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTCLIP, FAIL, "unable to prepare for I/O operation")
+
+ /* Fail if there are unmapped parts of the selection as they would not be
+ * written */
+ if(tot_nelmts != nelmts)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "write requested to unmapped portion of virtual dataset")
+
+ /* Iterate over mappings */
+ for(i = 0; i < storage->list_nused; i++) {
+ /* Sanity check that virtual space has been patched by now */
+ HDassert(storage->list[i].virtual_space_status == H5O_VIRTUAL_STATUS_CORRECT);
+
+ /* Check for "printf" source dataset resolution */
+ if(storage->list[i].psfn_nsubs || storage->list[i].psdn_nsubs) {
+ /* Iterate over sub-source dsets */
+ for(j = storage->list[i].sub_dset_io_start;
+ j < storage->list[i].sub_dset_io_end; j++)
+ if(H5D__virtual_write_one(io_info, type_info, file_space, &storage->list[i].sub_dset[j]) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "unable to write to source dataset")
+ } /* end if */
+ else
+ /* Write to source dataset */
+ if(H5D__virtual_write_one(io_info, type_info, file_space, &storage->list[i].source_dset) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "unable to write to source dataset")
+ } /* end for */
+
+done:
+ /* Cleanup I/O operation */
+ if(H5D__virtual_post_io(storage) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "can't cleanup I/O operation")
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_write() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5D__virtual_flush
+ *
+ * Purpose: Writes all dirty data to disk.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * February 6, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5D__virtual_flush(H5D_t *dset, hid_t dxpl_id)
+{
+ H5O_storage_virtual_t *storage; /* Convenient pointer into layout struct */
+ size_t i, j; /* Local index variables */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(dset);
+
+ storage = &dset->shared->layout.storage.u.virt;
+
+ /* Flush only open datasets */
+ for(i = 0; i < storage->list_nused; i++)
+ /* Check for "printf" source dataset resolution */
+ if(storage->list[i].psfn_nsubs || storage->list[i].psdn_nsubs) {
+ /* Iterate over sub-source dsets */
+ for(j = 0; j < storage->list[i].sub_dset_nused; j++)
+ if(storage->list[i].sub_dset[j].dset)
+ /* Flush source dataset */
+ if(H5D__flush_real(storage->list[i].sub_dset[j].dset, dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "unable to flush source dataset")
+ } /* end if */
+ else
+ if(storage->list[i].source_dset.dset)
+ /* Flush source dataset */
+ if(H5D__flush_real(storage->list[i].source_dset.dset, dxpl_id) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "unable to write to source dataset")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5D__virtual_flush() */
+
diff --git a/src/H5Edefin.h b/src/H5Edefin.h
index 183f72c..a5406f9 100644
--- a/src/H5Edefin.h
+++ b/src/H5Edefin.h
@@ -21,99 +21,76 @@
#define _H5Edefin_H
/* Major error IDs */
-hid_t H5E_FUNC_g = FAIL; /* Function entry/exit */
-hid_t H5E_FILE_g = FAIL; /* File accessibilty */
-hid_t H5E_SOHM_g = FAIL; /* Shared Object Header Messages */
-hid_t H5E_SYM_g = FAIL; /* Symbol table */
-hid_t H5E_PLUGIN_g = FAIL; /* Plugin for dynamically loaded library */
-hid_t H5E_VFL_g = FAIL; /* Virtual File Layer */
+hid_t H5E_EARRAY_g = FAIL; /* Extensible Array */
+hid_t H5E_PLIST_g = FAIL; /* Property lists */
+hid_t H5E_NONE_MAJOR_g = FAIL; /* No error */
+hid_t H5E_FSPACE_g = FAIL; /* Free Space Manager */
+hid_t H5E_STORAGE_g = FAIL; /* Data storage */
+hid_t H5E_CACHE_g = FAIL; /* Object cache */
+hid_t H5E_IO_g = FAIL; /* Low-level I/O */
hid_t H5E_INTERNAL_g = FAIL; /* Internal error (too specific to document in detail) */
-hid_t H5E_BTREE_g = FAIL; /* B-Tree node */
-hid_t H5E_REFERENCE_g = FAIL; /* References */
+hid_t H5E_SYM_g = FAIL; /* Symbol table */
hid_t H5E_DATASPACE_g = FAIL; /* Dataspace */
-hid_t H5E_RESOURCE_g = FAIL; /* Resource unavailable */
-hid_t H5E_RS_g = FAIL; /* Reference Counted Strings */
hid_t H5E_FARRAY_g = FAIL; /* Fixed Array */
-hid_t H5E_HEAP_g = FAIL; /* Heap */
-hid_t H5E_ATTR_g = FAIL; /* Attribute */
-hid_t H5E_IO_g = FAIL; /* Low-level I/O */
+hid_t H5E_OHDR_g = FAIL; /* Object header */
+hid_t H5E_SOHM_g = FAIL; /* Shared Object Header Messages */
hid_t H5E_EFL_g = FAIL; /* External file list */
-hid_t H5E_TST_g = FAIL; /* Ternary Search Trees */
-hid_t H5E_FSPACE_g = FAIL; /* Free Space Manager */
+hid_t H5E_SLIST_g = FAIL; /* Skip Lists */
+hid_t H5E_BTREE_g = FAIL; /* B-Tree node */
+hid_t H5E_PLUGIN_g = FAIL; /* Plugin for dynamically loaded library */
+hid_t H5E_ATOM_g = FAIL; /* Object atom */
+hid_t H5E_FILE_g = FAIL; /* File accessibilty */
+hid_t H5E_HEAP_g = FAIL; /* Heap */
+hid_t H5E_VFL_g = FAIL; /* Virtual File Layer */
hid_t H5E_DATASET_g = FAIL; /* Dataset */
-hid_t H5E_STORAGE_g = FAIL; /* Data storage */
hid_t H5E_LINK_g = FAIL; /* Links */
-hid_t H5E_PLIST_g = FAIL; /* Property lists */
-hid_t H5E_DATATYPE_g = FAIL; /* Datatype */
-hid_t H5E_OHDR_g = FAIL; /* Object header */
-hid_t H5E_ATOM_g = FAIL; /* Object atom */
-hid_t H5E_NONE_MAJOR_g = FAIL; /* No error */
-hid_t H5E_SLIST_g = FAIL; /* Skip Lists */
-hid_t H5E_ARGS_g = FAIL; /* Invalid arguments to routine */
-hid_t H5E_EARRAY_g = FAIL; /* Extensible Array */
hid_t H5E_PLINE_g = FAIL; /* Data filters */
+hid_t H5E_FUNC_g = FAIL; /* Function entry/exit */
+hid_t H5E_TST_g = FAIL; /* Ternary Search Trees */
+hid_t H5E_ATTR_g = FAIL; /* Attribute */
hid_t H5E_ERROR_g = FAIL; /* Error API */
-hid_t H5E_CACHE_g = FAIL; /* Object cache */
+hid_t H5E_ARGS_g = FAIL; /* Invalid arguments to routine */
+hid_t H5E_RESOURCE_g = FAIL; /* Resource unavailable */
+hid_t H5E_DATATYPE_g = FAIL; /* Datatype */
+hid_t H5E_RS_g = FAIL; /* Reference Counted Strings */
+hid_t H5E_REFERENCE_g = FAIL; /* References */
/* Minor error IDs */
-/* Generic low-level file I/O errors */
-hid_t H5E_SEEKERROR_g = FAIL; /* Seek failed */
-hid_t H5E_READERROR_g = FAIL; /* Read failed */
-hid_t H5E_WRITEERROR_g = FAIL; /* Write failed */
-hid_t H5E_CLOSEERROR_g = FAIL; /* Close failed */
-hid_t H5E_OVERFLOW_g = FAIL; /* Address overflowed */
-hid_t H5E_FCNTL_g = FAIL; /* File control (fcntl) failed */
-
-/* Resource errors */
-hid_t H5E_NOSPACE_g = FAIL; /* No space available for allocation */
-hid_t H5E_CANTALLOC_g = FAIL; /* Can't allocate space */
-hid_t H5E_CANTCOPY_g = FAIL; /* Unable to copy object */
-hid_t H5E_CANTFREE_g = FAIL; /* Unable to free object */
-hid_t H5E_ALREADYEXISTS_g = FAIL; /* Object already exists */
-hid_t H5E_CANTLOCK_g = FAIL; /* Unable to lock object */
-hid_t H5E_CANTUNLOCK_g = FAIL; /* Unable to unlock object */
-hid_t H5E_CANTGC_g = FAIL; /* Unable to garbage collect */
-hid_t H5E_CANTGETSIZE_g = FAIL; /* Unable to compute size */
-hid_t H5E_OBJOPEN_g = FAIL; /* Object is already open */
+/* No error */
+hid_t H5E_NONE_MINOR_g = FAIL; /* No error */
-/* Heap errors */
-hid_t H5E_CANTRESTORE_g = FAIL; /* Can't restore condition */
-hid_t H5E_CANTCOMPUTE_g = FAIL; /* Can't compute value */
-hid_t H5E_CANTEXTEND_g = FAIL; /* Can't extend heap's space */
-hid_t H5E_CANTATTACH_g = FAIL; /* Can't attach object */
-hid_t H5E_CANTUPDATE_g = FAIL; /* Can't update object */
-hid_t H5E_CANTOPERATE_g = FAIL; /* Can't operate on object */
+/* Group related errors */
+hid_t H5E_CANTOPENOBJ_g = FAIL; /* Can't open object */
+hid_t H5E_CANTCLOSEOBJ_g = FAIL; /* Can't close object */
+hid_t H5E_COMPLEN_g = FAIL; /* Name component is too long */
+hid_t H5E_PATH_g = FAIL; /* Problem with path to object */
/* Function entry/exit interface errors */
hid_t H5E_CANTINIT_g = FAIL; /* Unable to initialize object */
hid_t H5E_ALREADYINIT_g = FAIL; /* Object already initialized */
hid_t H5E_CANTRELEASE_g = FAIL; /* Unable to release object */
-/* Property list errors */
-hid_t H5E_CANTGET_g = FAIL; /* Can't get value */
-hid_t H5E_CANTSET_g = FAIL; /* Can't set value */
-hid_t H5E_DUPCLASS_g = FAIL; /* Duplicate class name in parent class */
-hid_t H5E_SETDISALLOWED_g = FAIL; /* Disallowed operation */
-
-/* Free space errors */
-hid_t H5E_CANTMERGE_g = FAIL; /* Can't merge objects */
-hid_t H5E_CANTREVIVE_g = FAIL; /* Can't revive object */
-hid_t H5E_CANTSHRINK_g = FAIL; /* Can't shrink container */
+/* Parallel MPI errors */
+hid_t H5E_MPI_g = FAIL; /* Some MPI function failed */
+hid_t H5E_MPIERRSTR_g = FAIL; /* MPI Error String */
+hid_t H5E_CANTRECV_g = FAIL; /* Can't receive data */
-/* Object header related errors */
-hid_t H5E_LINKCOUNT_g = FAIL; /* Bad object header link count */
-hid_t H5E_VERSION_g = FAIL; /* Wrong version number */
-hid_t H5E_ALIGNMENT_g = FAIL; /* Alignment error */
-hid_t H5E_BADMESG_g = FAIL; /* Unrecognized message */
-hid_t H5E_CANTDELETE_g = FAIL; /* Can't delete message */
-hid_t H5E_BADITER_g = FAIL; /* Iteration failed */
-hid_t H5E_CANTPACK_g = FAIL; /* Can't pack messages */
-hid_t H5E_CANTRESET_g = FAIL; /* Can't reset object */
-hid_t H5E_CANTRENAME_g = FAIL; /* Unable to rename object */
+/* Object atom related errors */
+hid_t H5E_BADATOM_g = FAIL; /* Unable to find atom information (already closed?) */
+hid_t H5E_BADGROUP_g = FAIL; /* Unable to find ID group information */
+hid_t H5E_CANTREGISTER_g = FAIL; /* Unable to register new atom */
+hid_t H5E_CANTINC_g = FAIL; /* Unable to increment reference count */
+hid_t H5E_CANTDEC_g = FAIL; /* Unable to decrement reference count */
+hid_t H5E_NOIDS_g = FAIL; /* Out of IDs for group */
-/* System level errors */
-hid_t H5E_SYSERRSTR_g = FAIL; /* System error message */
+/* Generic low-level file I/O errors */
+hid_t H5E_SEEKERROR_g = FAIL; /* Seek failed */
+hid_t H5E_READERROR_g = FAIL; /* Read failed */
+hid_t H5E_WRITEERROR_g = FAIL; /* Write failed */
+hid_t H5E_CLOSEERROR_g = FAIL; /* Close failed */
+hid_t H5E_OVERFLOW_g = FAIL; /* Address overflowed */
+hid_t H5E_FCNTL_g = FAIL; /* File control (fcntl) failed */
/* I/O pipeline errors */
hid_t H5E_NOFILTER_g = FAIL; /* Requested filter is not available */
@@ -123,14 +100,11 @@ hid_t H5E_SETLOCAL_g = FAIL; /* Error from filter 'set local' callbac
hid_t H5E_NOENCODER_g = FAIL; /* Filter present but encoding disabled */
hid_t H5E_CANTFILTER_g = FAIL; /* Filter operation failed */
-/* Group related errors */
-hid_t H5E_CANTOPENOBJ_g = FAIL; /* Can't open object */
-hid_t H5E_CANTCLOSEOBJ_g = FAIL; /* Can't close object */
-hid_t H5E_COMPLEN_g = FAIL; /* Name component is too long */
-hid_t H5E_PATH_g = FAIL; /* Problem with path to object */
-
-/* No error */
-hid_t H5E_NONE_MINOR_g = FAIL; /* No error */
+/* Property list errors */
+hid_t H5E_CANTGET_g = FAIL; /* Can't get value */
+hid_t H5E_CANTSET_g = FAIL; /* Can't set value */
+hid_t H5E_DUPCLASS_g = FAIL; /* Duplicate class name in parent class */
+hid_t H5E_SETDISALLOWED_g = FAIL; /* Disallowed operation */
/* Plugin errors */
hid_t H5E_OPENERROR_g = FAIL; /* Can't open directory or file */
@@ -146,14 +120,6 @@ hid_t H5E_BADFILE_g = FAIL; /* Bad file ID accessed */
hid_t H5E_TRUNCATED_g = FAIL; /* File has been truncated */
hid_t H5E_MOUNT_g = FAIL; /* File mount error */
-/* Object atom related errors */
-hid_t H5E_BADATOM_g = FAIL; /* Unable to find atom information (already closed?) */
-hid_t H5E_BADGROUP_g = FAIL; /* Unable to find ID group information */
-hid_t H5E_CANTREGISTER_g = FAIL; /* Unable to register new atom */
-hid_t H5E_CANTINC_g = FAIL; /* Unable to increment reference count */
-hid_t H5E_CANTDEC_g = FAIL; /* Unable to decrement reference count */
-hid_t H5E_NOIDS_g = FAIL; /* Out of IDs for group */
-
/* Cache related errors */
hid_t H5E_CANTFLUSH_g = FAIL; /* Unable to flush data from cache */
hid_t H5E_CANTSERIALIZE_g = FAIL; /* Unable to serialize data from cache */
@@ -175,6 +141,42 @@ hid_t H5E_CANTDEPEND_g = FAIL; /* Unable to create a flush dependency *
hid_t H5E_CANTUNDEPEND_g = FAIL; /* Unable to destroy a flush dependency */
hid_t H5E_CANTNOTIFY_g = FAIL; /* Unable to notify object about action */
+/* B-tree related errors */
+hid_t H5E_NOTFOUND_g = FAIL; /* Object not found */
+hid_t H5E_EXISTS_g = FAIL; /* Object already exists */
+hid_t H5E_CANTENCODE_g = FAIL; /* Unable to encode value */
+hid_t H5E_CANTDECODE_g = FAIL; /* Unable to decode value */
+hid_t H5E_CANTSPLIT_g = FAIL; /* Unable to split node */
+hid_t H5E_CANTREDISTRIBUTE_g = FAIL; /* Unable to redistribute records */
+hid_t H5E_CANTSWAP_g = FAIL; /* Unable to swap records */
+hid_t H5E_CANTINSERT_g = FAIL; /* Unable to insert object */
+hid_t H5E_CANTLIST_g = FAIL; /* Unable to list node */
+hid_t H5E_CANTMODIFY_g = FAIL; /* Unable to modify record */
+hid_t H5E_CANTREMOVE_g = FAIL; /* Unable to remove object */
+
+/* Resource errors */
+hid_t H5E_NOSPACE_g = FAIL; /* No space available for allocation */
+hid_t H5E_CANTALLOC_g = FAIL; /* Can't allocate space */
+hid_t H5E_CANTCOPY_g = FAIL; /* Unable to copy object */
+hid_t H5E_CANTFREE_g = FAIL; /* Unable to free object */
+hid_t H5E_ALREADYEXISTS_g = FAIL; /* Object already exists */
+hid_t H5E_CANTLOCK_g = FAIL; /* Unable to lock object */
+hid_t H5E_CANTUNLOCK_g = FAIL; /* Unable to unlock object */
+hid_t H5E_CANTGC_g = FAIL; /* Unable to garbage collect */
+hid_t H5E_CANTGETSIZE_g = FAIL; /* Unable to compute size */
+hid_t H5E_OBJOPEN_g = FAIL; /* Object is already open */
+
+/* Object header related errors */
+hid_t H5E_LINKCOUNT_g = FAIL; /* Bad object header link count */
+hid_t H5E_VERSION_g = FAIL; /* Wrong version number */
+hid_t H5E_ALIGNMENT_g = FAIL; /* Alignment error */
+hid_t H5E_BADMESG_g = FAIL; /* Unrecognized message */
+hid_t H5E_CANTDELETE_g = FAIL; /* Can't delete message */
+hid_t H5E_BADITER_g = FAIL; /* Iteration failed */
+hid_t H5E_CANTPACK_g = FAIL; /* Can't pack messages */
+hid_t H5E_CANTRESET_g = FAIL; /* Can't reset object */
+hid_t H5E_CANTRENAME_g = FAIL; /* Unable to rename object */
+
/* Link related errors */
hid_t H5E_TRAVERSE_g = FAIL; /* Link traversal failure */
hid_t H5E_NLINKS_g = FAIL; /* Too many soft links in path */
@@ -182,10 +184,20 @@ hid_t H5E_NOTREGISTERED_g = FAIL; /* Link class not registered */
hid_t H5E_CANTMOVE_g = FAIL; /* Can't move object */
hid_t H5E_CANTSORT_g = FAIL; /* Can't sort objects */
-/* Parallel MPI errors */
-hid_t H5E_MPI_g = FAIL; /* Some MPI function failed */
-hid_t H5E_MPIERRSTR_g = FAIL; /* MPI Error String */
-hid_t H5E_CANTRECV_g = FAIL; /* Can't receive data */
+/* Argument errors */
+hid_t H5E_UNINITIALIZED_g = FAIL; /* Information is uinitialized */
+hid_t H5E_UNSUPPORTED_g = FAIL; /* Feature is unsupported */
+hid_t H5E_BADTYPE_g = FAIL; /* Inappropriate type */
+hid_t H5E_BADRANGE_g = FAIL; /* Out of range */
+hid_t H5E_BADVALUE_g = FAIL; /* Bad value */
+
+/* System level errors */
+hid_t H5E_SYSERRSTR_g = FAIL; /* System error message */
+
+/* Free space errors */
+hid_t H5E_CANTMERGE_g = FAIL; /* Can't merge objects */
+hid_t H5E_CANTREVIVE_g = FAIL; /* Can't revive object */
+hid_t H5E_CANTSHRINK_g = FAIL; /* Can't shrink container */
/* Dataspace errors */
hid_t H5E_CANTCLIP_g = FAIL; /* Can't clip hyperslab region */
@@ -194,26 +206,15 @@ hid_t H5E_CANTSELECT_g = FAIL; /* Can't select hyperslab */
hid_t H5E_CANTNEXT_g = FAIL; /* Can't move to next iterator location */
hid_t H5E_BADSELECT_g = FAIL; /* Invalid selection */
hid_t H5E_CANTCOMPARE_g = FAIL; /* Can't compare objects */
+hid_t H5E_CANTAPPEND_g = FAIL; /* Can't append object */
-/* Argument errors */
-hid_t H5E_UNINITIALIZED_g = FAIL; /* Information is uinitialized */
-hid_t H5E_UNSUPPORTED_g = FAIL; /* Feature is unsupported */
-hid_t H5E_BADTYPE_g = FAIL; /* Inappropriate type */
-hid_t H5E_BADRANGE_g = FAIL; /* Out of range */
-hid_t H5E_BADVALUE_g = FAIL; /* Bad value */
-
-/* B-tree related errors */
-hid_t H5E_NOTFOUND_g = FAIL; /* Object not found */
-hid_t H5E_EXISTS_g = FAIL; /* Object already exists */
-hid_t H5E_CANTENCODE_g = FAIL; /* Unable to encode value */
-hid_t H5E_CANTDECODE_g = FAIL; /* Unable to decode value */
-hid_t H5E_CANTSPLIT_g = FAIL; /* Unable to split node */
-hid_t H5E_CANTREDISTRIBUTE_g = FAIL; /* Unable to redistribute records */
-hid_t H5E_CANTSWAP_g = FAIL; /* Unable to swap records */
-hid_t H5E_CANTINSERT_g = FAIL; /* Unable to insert object */
-hid_t H5E_CANTLIST_g = FAIL; /* Unable to list node */
-hid_t H5E_CANTMODIFY_g = FAIL; /* Unable to modify record */
-hid_t H5E_CANTREMOVE_g = FAIL; /* Unable to remove object */
+/* Heap errors */
+hid_t H5E_CANTRESTORE_g = FAIL; /* Can't restore condition */
+hid_t H5E_CANTCOMPUTE_g = FAIL; /* Can't compute value */
+hid_t H5E_CANTEXTEND_g = FAIL; /* Can't extend heap's space */
+hid_t H5E_CANTATTACH_g = FAIL; /* Can't attach object */
+hid_t H5E_CANTUPDATE_g = FAIL; /* Can't update object */
+hid_t H5E_CANTOPERATE_g = FAIL; /* Can't operate on object */
/* Datatype conversion errors */
hid_t H5E_CANTCONVERT_g = FAIL; /* Can't convert datatypes */
diff --git a/src/H5Einit.h b/src/H5Einit.h
index 9724748..eed93bd 100644
--- a/src/H5Einit.h
+++ b/src/H5Einit.h
@@ -24,170 +24,170 @@
/* Major error codes */
/*********************/
-assert(H5E_FUNC_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Function entry/exit"))==NULL)
+assert(H5E_EARRAY_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Extensible Array"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_FUNC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_EARRAY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_FILE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "File accessibilty"))==NULL)
+assert(H5E_PLIST_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Property lists"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_FILE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_PLIST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_SOHM_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Shared Object Header Messages"))==NULL)
+assert(H5E_NONE_MAJOR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "No error"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_SOHM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_NONE_MAJOR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_SYM_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Symbol table"))==NULL)
+assert(H5E_FSPACE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Free Space Manager"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_SYM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_FSPACE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_PLUGIN_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Plugin for dynamically loaded library"))==NULL)
+assert(H5E_STORAGE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Data storage"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_PLUGIN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_STORAGE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_VFL_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Virtual File Layer"))==NULL)
+assert(H5E_CACHE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Object cache"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_VFL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CACHE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_IO_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Low-level I/O"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_IO_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
assert(H5E_INTERNAL_g==(-1));
if((msg = H5E_create_msg(cls, H5E_MAJOR, "Internal error (too specific to document in detail)"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
if((H5E_INTERNAL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_BTREE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "B-Tree node"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_BTREE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_REFERENCE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "References"))==NULL)
+assert(H5E_SYM_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Symbol table"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_REFERENCE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_SYM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
assert(H5E_DATASPACE_g==(-1));
if((msg = H5E_create_msg(cls, H5E_MAJOR, "Dataspace"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
if((H5E_DATASPACE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_RESOURCE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Resource unavailable"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_RESOURCE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_RS_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Reference Counted Strings"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_RS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
assert(H5E_FARRAY_g==(-1));
if((msg = H5E_create_msg(cls, H5E_MAJOR, "Fixed Array"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
if((H5E_FARRAY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_HEAP_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Heap"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_HEAP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_ATTR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Attribute"))==NULL)
+assert(H5E_OHDR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Object header"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_ATTR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_OHDR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_IO_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Low-level I/O"))==NULL)
+assert(H5E_SOHM_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Shared Object Header Messages"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_IO_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_SOHM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
assert(H5E_EFL_g==(-1));
if((msg = H5E_create_msg(cls, H5E_MAJOR, "External file list"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
if((H5E_EFL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_TST_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Ternary Search Trees"))==NULL)
+assert(H5E_SLIST_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Skip Lists"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_TST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_SLIST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_FSPACE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Free Space Manager"))==NULL)
+assert(H5E_BTREE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "B-Tree node"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_FSPACE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_BTREE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_PLUGIN_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Plugin for dynamically loaded library"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_PLUGIN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_ATOM_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Object atom"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_ATOM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_FILE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "File accessibilty"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_FILE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_HEAP_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Heap"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_HEAP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_VFL_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Virtual File Layer"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_VFL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
assert(H5E_DATASET_g==(-1));
if((msg = H5E_create_msg(cls, H5E_MAJOR, "Dataset"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
if((H5E_DATASET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_STORAGE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Data storage"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_STORAGE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
assert(H5E_LINK_g==(-1));
if((msg = H5E_create_msg(cls, H5E_MAJOR, "Links"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
if((H5E_LINK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_PLIST_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Property lists"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_PLIST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_DATATYPE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Datatype"))==NULL)
+assert(H5E_PLINE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Data filters"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_DATATYPE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_PLINE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_OHDR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Object header"))==NULL)
+assert(H5E_FUNC_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Function entry/exit"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_OHDR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_FUNC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_ATOM_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Object atom"))==NULL)
+assert(H5E_TST_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Ternary Search Trees"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_ATOM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_TST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_NONE_MAJOR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "No error"))==NULL)
+assert(H5E_ATTR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Attribute"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_NONE_MAJOR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_ATTR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_SLIST_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Skip Lists"))==NULL)
+assert(H5E_ERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Error API"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_SLIST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_ERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
assert(H5E_ARGS_g==(-1));
if((msg = H5E_create_msg(cls, H5E_MAJOR, "Invalid arguments to routine"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
if((H5E_ARGS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_EARRAY_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Extensible Array"))==NULL)
+assert(H5E_RESOURCE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Resource unavailable"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_EARRAY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_RESOURCE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_PLINE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Data filters"))==NULL)
+assert(H5E_DATATYPE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Datatype"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_PLINE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_DATATYPE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_ERROR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Error API"))==NULL)
+assert(H5E_RS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Reference Counted Strings"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_ERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_RS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CACHE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MAJOR, "Object cache"))==NULL)
+assert(H5E_REFERENCE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "References"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CACHE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_REFERENCE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
/*********************/
@@ -195,120 +195,33 @@ if((H5E_CACHE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
/*********************/
-/* Generic low-level file I/O errors */
-assert(H5E_SEEKERROR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Seek failed"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_SEEKERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_READERROR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Read failed"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_READERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_WRITEERROR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Write failed"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_WRITEERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CLOSEERROR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Close failed"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CLOSEERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_OVERFLOW_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Address overflowed"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_OVERFLOW_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_FCNTL_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "File control (fcntl) failed"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_FCNTL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-
-/* Resource errors */
-assert(H5E_NOSPACE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "No space available for allocation"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_NOSPACE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTALLOC_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't allocate space"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTALLOC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTCOPY_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to copy object"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTCOPY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTFREE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to free object"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTFREE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_ALREADYEXISTS_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Object already exists"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_ALREADYEXISTS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTLOCK_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to lock object"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTLOCK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTUNLOCK_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to unlock object"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTUNLOCK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTGC_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to garbage collect"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTGC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTGETSIZE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to compute size"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTGETSIZE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_OBJOPEN_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Object is already open"))==NULL)
+/* No error */
+assert(H5E_NONE_MINOR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "No error"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_OBJOPEN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_NONE_MINOR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-/* Heap errors */
-assert(H5E_CANTRESTORE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't restore condition"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTRESTORE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTCOMPUTE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't compute value"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTCOMPUTE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTEXTEND_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't extend heap's space"))==NULL)
+/* Group related errors */
+assert(H5E_CANTOPENOBJ_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't open object"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTEXTEND_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTOPENOBJ_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTATTACH_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't attach object"))==NULL)
+assert(H5E_CANTCLOSEOBJ_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't close object"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTATTACH_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTCLOSEOBJ_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTUPDATE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't update object"))==NULL)
+assert(H5E_COMPLEN_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Name component is too long"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTUPDATE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_COMPLEN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTOPERATE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't operate on object"))==NULL)
+assert(H5E_PATH_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Problem with path to object"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTOPERATE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_PATH_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
/* Function entry/exit interface errors */
@@ -328,97 +241,85 @@ if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to release object"))==NULL)
if((H5E_CANTRELEASE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-/* Property list errors */
-assert(H5E_CANTGET_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't get value"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTGET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTSET_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't set value"))==NULL)
+/* Parallel MPI errors */
+assert(H5E_MPI_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Some MPI function failed"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTSET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_MPI_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_DUPCLASS_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Duplicate class name in parent class"))==NULL)
+assert(H5E_MPIERRSTR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "MPI Error String"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_DUPCLASS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_MPIERRSTR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_SETDISALLOWED_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Disallowed operation"))==NULL)
+assert(H5E_CANTRECV_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't receive data"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_SETDISALLOWED_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTRECV_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-/* Free space errors */
-assert(H5E_CANTMERGE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't merge objects"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTMERGE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTREVIVE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't revive object"))==NULL)
+/* Object atom related errors */
+assert(H5E_BADATOM_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to find atom information (already closed?)"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTREVIVE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_BADATOM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTSHRINK_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't shrink container"))==NULL)
+assert(H5E_BADGROUP_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to find ID group information"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTSHRINK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_BADGROUP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-
-/* Object header related errors */
-assert(H5E_LINKCOUNT_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Bad object header link count"))==NULL)
+assert(H5E_CANTREGISTER_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to register new atom"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_LINKCOUNT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTREGISTER_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_VERSION_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Wrong version number"))==NULL)
+assert(H5E_CANTINC_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to increment reference count"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_VERSION_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTINC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_ALIGNMENT_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Alignment error"))==NULL)
+assert(H5E_CANTDEC_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to decrement reference count"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_ALIGNMENT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTDEC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_BADMESG_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unrecognized message"))==NULL)
+assert(H5E_NOIDS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Out of IDs for group"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_BADMESG_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_NOIDS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTDELETE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't delete message"))==NULL)
+
+/* Generic low-level file I/O errors */
+assert(H5E_SEEKERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Seek failed"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTDELETE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_SEEKERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_BADITER_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Iteration failed"))==NULL)
+assert(H5E_READERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Read failed"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_BADITER_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_READERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTPACK_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't pack messages"))==NULL)
+assert(H5E_WRITEERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Write failed"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTPACK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_WRITEERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTRESET_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't reset object"))==NULL)
+assert(H5E_CLOSEERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Close failed"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTRESET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CLOSEERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTRENAME_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to rename object"))==NULL)
+assert(H5E_OVERFLOW_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Address overflowed"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTRENAME_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_OVERFLOW_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-
-/* System level errors */
-assert(H5E_SYSERRSTR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "System error message"))==NULL)
+assert(H5E_FCNTL_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "File control (fcntl) failed"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_SYSERRSTR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_FCNTL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
/* I/O pipeline errors */
@@ -453,33 +354,26 @@ if((msg = H5E_create_msg(cls, H5E_MINOR, "Filter operation failed"))==NULL)
if((H5E_CANTFILTER_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-/* Group related errors */
-assert(H5E_CANTOPENOBJ_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't open object"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTOPENOBJ_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTCLOSEOBJ_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't close object"))==NULL)
+/* Property list errors */
+assert(H5E_CANTGET_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't get value"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTCLOSEOBJ_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTGET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_COMPLEN_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Name component is too long"))==NULL)
+assert(H5E_CANTSET_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't set value"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_COMPLEN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTSET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_PATH_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Problem with path to object"))==NULL)
+assert(H5E_DUPCLASS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Duplicate class name in parent class"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_PATH_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_DUPCLASS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-
-/* No error */
-assert(H5E_NONE_MINOR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "No error"))==NULL)
+assert(H5E_SETDISALLOWED_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Disallowed operation"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_NONE_MINOR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_SETDISALLOWED_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
/* Plugin errors */
@@ -536,38 +430,6 @@ if((msg = H5E_create_msg(cls, H5E_MINOR, "File mount error"))==NULL)
if((H5E_MOUNT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-/* Object atom related errors */
-assert(H5E_BADATOM_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to find atom information (already closed?)"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_BADATOM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_BADGROUP_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to find ID group information"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_BADGROUP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTREGISTER_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to register new atom"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTREGISTER_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTINC_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to increment reference count"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTINC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTDEC_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to decrement reference count"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTDEC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_NOIDS_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Out of IDs for group"))==NULL)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_NOIDS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
- HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-
/* Cache related errors */
assert(H5E_CANTFLUSH_g==(-1));
if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to flush data from cache"))==NULL)
@@ -665,80 +527,187 @@ if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to notify object about action")
if((H5E_CANTNOTIFY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-/* Link related errors */
-assert(H5E_TRAVERSE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Link traversal failure"))==NULL)
+/* B-tree related errors */
+assert(H5E_NOTFOUND_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Object not found"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_TRAVERSE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_NOTFOUND_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_NLINKS_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Too many soft links in path"))==NULL)
+assert(H5E_EXISTS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Object already exists"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_NLINKS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_EXISTS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_NOTREGISTERED_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Link class not registered"))==NULL)
+assert(H5E_CANTENCODE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to encode value"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_NOTREGISTERED_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTENCODE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTMOVE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't move object"))==NULL)
+assert(H5E_CANTDECODE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to decode value"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTMOVE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTDECODE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTSORT_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't sort objects"))==NULL)
+assert(H5E_CANTSPLIT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to split node"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTSORT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTSPLIT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTREDISTRIBUTE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to redistribute records"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTREDISTRIBUTE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTSWAP_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to swap records"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTSWAP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTINSERT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to insert object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTINSERT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTLIST_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to list node"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTLIST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTMODIFY_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to modify record"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTMODIFY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTREMOVE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to remove object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTREMOVE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-/* Parallel MPI errors */
-assert(H5E_MPI_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Some MPI function failed"))==NULL)
+/* Resource errors */
+assert(H5E_NOSPACE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "No space available for allocation"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_MPI_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_NOSPACE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_MPIERRSTR_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "MPI Error String"))==NULL)
+assert(H5E_CANTALLOC_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't allocate space"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_MPIERRSTR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTALLOC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTRECV_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't receive data"))==NULL)
+assert(H5E_CANTCOPY_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to copy object"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTRECV_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTCOPY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTFREE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to free object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTFREE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_ALREADYEXISTS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Object already exists"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_ALREADYEXISTS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTLOCK_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to lock object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTLOCK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTUNLOCK_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to unlock object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTUNLOCK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTGC_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to garbage collect"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTGC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTGETSIZE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to compute size"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTGETSIZE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_OBJOPEN_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Object is already open"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_OBJOPEN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-/* Dataspace errors */
-assert(H5E_CANTCLIP_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't clip hyperslab region"))==NULL)
+/* Object header related errors */
+assert(H5E_LINKCOUNT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Bad object header link count"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTCLIP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_LINKCOUNT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTCOUNT_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't count elements"))==NULL)
+assert(H5E_VERSION_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Wrong version number"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTCOUNT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_VERSION_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTSELECT_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't select hyperslab"))==NULL)
+assert(H5E_ALIGNMENT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Alignment error"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTSELECT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_ALIGNMENT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTNEXT_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't move to next iterator location"))==NULL)
+assert(H5E_BADMESG_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unrecognized message"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTNEXT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_BADMESG_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_BADSELECT_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Invalid selection"))==NULL)
+assert(H5E_CANTDELETE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't delete message"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_BADSELECT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTDELETE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTCOMPARE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't compare objects"))==NULL)
+assert(H5E_BADITER_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Iteration failed"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTCOMPARE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_BADITER_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTPACK_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't pack messages"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTPACK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTRESET_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't reset object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTRESET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTRENAME_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to rename object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTRENAME_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Link related errors */
+assert(H5E_TRAVERSE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Link traversal failure"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_TRAVERSE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_NLINKS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Too many soft links in path"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NLINKS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_NOTREGISTERED_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Link class not registered"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NOTREGISTERED_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTMOVE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't move object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTMOVE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTSORT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't sort objects"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTSORT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
/* Argument errors */
@@ -768,61 +737,97 @@ if((msg = H5E_create_msg(cls, H5E_MINOR, "Bad value"))==NULL)
if((H5E_BADVALUE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-/* B-tree related errors */
-assert(H5E_NOTFOUND_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Object not found"))==NULL)
+/* System level errors */
+assert(H5E_SYSERRSTR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "System error message"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_NOTFOUND_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_SYSERRSTR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_EXISTS_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Object already exists"))==NULL)
+
+/* Free space errors */
+assert(H5E_CANTMERGE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't merge objects"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_EXISTS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTMERGE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTENCODE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to encode value"))==NULL)
+assert(H5E_CANTREVIVE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't revive object"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTENCODE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTREVIVE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTDECODE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to decode value"))==NULL)
+assert(H5E_CANTSHRINK_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't shrink container"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTDECODE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTSHRINK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTSPLIT_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to split node"))==NULL)
+
+/* Dataspace errors */
+assert(H5E_CANTCLIP_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't clip hyperslab region"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTSPLIT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTCLIP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTREDISTRIBUTE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to redistribute records"))==NULL)
+assert(H5E_CANTCOUNT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't count elements"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTREDISTRIBUTE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTCOUNT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTSWAP_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to swap records"))==NULL)
+assert(H5E_CANTSELECT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't select hyperslab"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTSWAP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTSELECT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTINSERT_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to insert object"))==NULL)
+assert(H5E_CANTNEXT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't move to next iterator location"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTINSERT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTNEXT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTLIST_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to list node"))==NULL)
+assert(H5E_BADSELECT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Invalid selection"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTLIST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_BADSELECT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTMODIFY_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to modify record"))==NULL)
+assert(H5E_CANTCOMPARE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't compare objects"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTMODIFY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTCOMPARE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
-assert(H5E_CANTREMOVE_g==(-1));
-if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to remove object"))==NULL)
+assert(H5E_CANTAPPEND_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't append object"))==NULL)
HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
-if((H5E_CANTREMOVE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+if((H5E_CANTAPPEND_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Heap errors */
+assert(H5E_CANTRESTORE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't restore condition"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTRESTORE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTCOMPUTE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't compute value"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTCOMPUTE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTEXTEND_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't extend heap's space"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTEXTEND_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTATTACH_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't attach object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTATTACH_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTUPDATE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't update object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTUPDATE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTOPERATE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't operate on object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTOPERATE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
/* Datatype conversion errors */
diff --git a/src/H5Epubgen.h b/src/H5Epubgen.h
index e79106f..9011fd3 100644
--- a/src/H5Epubgen.h
+++ b/src/H5Epubgen.h
@@ -24,77 +24,121 @@
/* Major error codes */
/*********************/
-#define H5E_FUNC (H5OPEN H5E_FUNC_g)
-#define H5E_FILE (H5OPEN H5E_FILE_g)
-#define H5E_SOHM (H5OPEN H5E_SOHM_g)
-#define H5E_SYM (H5OPEN H5E_SYM_g)
-#define H5E_PLUGIN (H5OPEN H5E_PLUGIN_g)
-#define H5E_VFL (H5OPEN H5E_VFL_g)
+#define H5E_EARRAY (H5OPEN H5E_EARRAY_g)
+#define H5E_PLIST (H5OPEN H5E_PLIST_g)
+#define H5E_NONE_MAJOR (H5OPEN H5E_NONE_MAJOR_g)
+#define H5E_FSPACE (H5OPEN H5E_FSPACE_g)
+#define H5E_STORAGE (H5OPEN H5E_STORAGE_g)
+#define H5E_CACHE (H5OPEN H5E_CACHE_g)
+#define H5E_IO (H5OPEN H5E_IO_g)
#define H5E_INTERNAL (H5OPEN H5E_INTERNAL_g)
-#define H5E_BTREE (H5OPEN H5E_BTREE_g)
-#define H5E_REFERENCE (H5OPEN H5E_REFERENCE_g)
+#define H5E_SYM (H5OPEN H5E_SYM_g)
#define H5E_DATASPACE (H5OPEN H5E_DATASPACE_g)
-#define H5E_RESOURCE (H5OPEN H5E_RESOURCE_g)
-#define H5E_RS (H5OPEN H5E_RS_g)
#define H5E_FARRAY (H5OPEN H5E_FARRAY_g)
-#define H5E_HEAP (H5OPEN H5E_HEAP_g)
-#define H5E_ATTR (H5OPEN H5E_ATTR_g)
-#define H5E_IO (H5OPEN H5E_IO_g)
+#define H5E_OHDR (H5OPEN H5E_OHDR_g)
+#define H5E_SOHM (H5OPEN H5E_SOHM_g)
#define H5E_EFL (H5OPEN H5E_EFL_g)
-#define H5E_TST (H5OPEN H5E_TST_g)
-#define H5E_FSPACE (H5OPEN H5E_FSPACE_g)
+#define H5E_SLIST (H5OPEN H5E_SLIST_g)
+#define H5E_BTREE (H5OPEN H5E_BTREE_g)
+#define H5E_PLUGIN (H5OPEN H5E_PLUGIN_g)
+#define H5E_ATOM (H5OPEN H5E_ATOM_g)
+#define H5E_FILE (H5OPEN H5E_FILE_g)
+#define H5E_HEAP (H5OPEN H5E_HEAP_g)
+#define H5E_VFL (H5OPEN H5E_VFL_g)
#define H5E_DATASET (H5OPEN H5E_DATASET_g)
-#define H5E_STORAGE (H5OPEN H5E_STORAGE_g)
#define H5E_LINK (H5OPEN H5E_LINK_g)
-#define H5E_PLIST (H5OPEN H5E_PLIST_g)
-#define H5E_DATATYPE (H5OPEN H5E_DATATYPE_g)
-#define H5E_OHDR (H5OPEN H5E_OHDR_g)
-#define H5E_ATOM (H5OPEN H5E_ATOM_g)
-#define H5E_NONE_MAJOR (H5OPEN H5E_NONE_MAJOR_g)
-#define H5E_SLIST (H5OPEN H5E_SLIST_g)
-#define H5E_ARGS (H5OPEN H5E_ARGS_g)
-#define H5E_EARRAY (H5OPEN H5E_EARRAY_g)
#define H5E_PLINE (H5OPEN H5E_PLINE_g)
+#define H5E_FUNC (H5OPEN H5E_FUNC_g)
+#define H5E_TST (H5OPEN H5E_TST_g)
+#define H5E_ATTR (H5OPEN H5E_ATTR_g)
#define H5E_ERROR (H5OPEN H5E_ERROR_g)
-#define H5E_CACHE (H5OPEN H5E_CACHE_g)
-H5_DLLVAR hid_t H5E_FUNC_g; /* Function entry/exit */
-H5_DLLVAR hid_t H5E_FILE_g; /* File accessibilty */
-H5_DLLVAR hid_t H5E_SOHM_g; /* Shared Object Header Messages */
-H5_DLLVAR hid_t H5E_SYM_g; /* Symbol table */
-H5_DLLVAR hid_t H5E_PLUGIN_g; /* Plugin for dynamically loaded library */
-H5_DLLVAR hid_t H5E_VFL_g; /* Virtual File Layer */
+#define H5E_ARGS (H5OPEN H5E_ARGS_g)
+#define H5E_RESOURCE (H5OPEN H5E_RESOURCE_g)
+#define H5E_DATATYPE (H5OPEN H5E_DATATYPE_g)
+#define H5E_RS (H5OPEN H5E_RS_g)
+#define H5E_REFERENCE (H5OPEN H5E_REFERENCE_g)
+H5_DLLVAR hid_t H5E_EARRAY_g; /* Extensible Array */
+H5_DLLVAR hid_t H5E_PLIST_g; /* Property lists */
+H5_DLLVAR hid_t H5E_NONE_MAJOR_g; /* No error */
+H5_DLLVAR hid_t H5E_FSPACE_g; /* Free Space Manager */
+H5_DLLVAR hid_t H5E_STORAGE_g; /* Data storage */
+H5_DLLVAR hid_t H5E_CACHE_g; /* Object cache */
+H5_DLLVAR hid_t H5E_IO_g; /* Low-level I/O */
H5_DLLVAR hid_t H5E_INTERNAL_g; /* Internal error (too specific to document in detail) */
-H5_DLLVAR hid_t H5E_BTREE_g; /* B-Tree node */
-H5_DLLVAR hid_t H5E_REFERENCE_g; /* References */
+H5_DLLVAR hid_t H5E_SYM_g; /* Symbol table */
H5_DLLVAR hid_t H5E_DATASPACE_g; /* Dataspace */
-H5_DLLVAR hid_t H5E_RESOURCE_g; /* Resource unavailable */
-H5_DLLVAR hid_t H5E_RS_g; /* Reference Counted Strings */
H5_DLLVAR hid_t H5E_FARRAY_g; /* Fixed Array */
-H5_DLLVAR hid_t H5E_HEAP_g; /* Heap */
-H5_DLLVAR hid_t H5E_ATTR_g; /* Attribute */
-H5_DLLVAR hid_t H5E_IO_g; /* Low-level I/O */
+H5_DLLVAR hid_t H5E_OHDR_g; /* Object header */
+H5_DLLVAR hid_t H5E_SOHM_g; /* Shared Object Header Messages */
H5_DLLVAR hid_t H5E_EFL_g; /* External file list */
-H5_DLLVAR hid_t H5E_TST_g; /* Ternary Search Trees */
-H5_DLLVAR hid_t H5E_FSPACE_g; /* Free Space Manager */
+H5_DLLVAR hid_t H5E_SLIST_g; /* Skip Lists */
+H5_DLLVAR hid_t H5E_BTREE_g; /* B-Tree node */
+H5_DLLVAR hid_t H5E_PLUGIN_g; /* Plugin for dynamically loaded library */
+H5_DLLVAR hid_t H5E_ATOM_g; /* Object atom */
+H5_DLLVAR hid_t H5E_FILE_g; /* File accessibilty */
+H5_DLLVAR hid_t H5E_HEAP_g; /* Heap */
+H5_DLLVAR hid_t H5E_VFL_g; /* Virtual File Layer */
H5_DLLVAR hid_t H5E_DATASET_g; /* Dataset */
-H5_DLLVAR hid_t H5E_STORAGE_g; /* Data storage */
H5_DLLVAR hid_t H5E_LINK_g; /* Links */
-H5_DLLVAR hid_t H5E_PLIST_g; /* Property lists */
-H5_DLLVAR hid_t H5E_DATATYPE_g; /* Datatype */
-H5_DLLVAR hid_t H5E_OHDR_g; /* Object header */
-H5_DLLVAR hid_t H5E_ATOM_g; /* Object atom */
-H5_DLLVAR hid_t H5E_NONE_MAJOR_g; /* No error */
-H5_DLLVAR hid_t H5E_SLIST_g; /* Skip Lists */
-H5_DLLVAR hid_t H5E_ARGS_g; /* Invalid arguments to routine */
-H5_DLLVAR hid_t H5E_EARRAY_g; /* Extensible Array */
H5_DLLVAR hid_t H5E_PLINE_g; /* Data filters */
+H5_DLLVAR hid_t H5E_FUNC_g; /* Function entry/exit */
+H5_DLLVAR hid_t H5E_TST_g; /* Ternary Search Trees */
+H5_DLLVAR hid_t H5E_ATTR_g; /* Attribute */
H5_DLLVAR hid_t H5E_ERROR_g; /* Error API */
-H5_DLLVAR hid_t H5E_CACHE_g; /* Object cache */
+H5_DLLVAR hid_t H5E_ARGS_g; /* Invalid arguments to routine */
+H5_DLLVAR hid_t H5E_RESOURCE_g; /* Resource unavailable */
+H5_DLLVAR hid_t H5E_DATATYPE_g; /* Datatype */
+H5_DLLVAR hid_t H5E_RS_g; /* Reference Counted Strings */
+H5_DLLVAR hid_t H5E_REFERENCE_g; /* References */
/*********************/
/* Minor error codes */
/*********************/
+/* No error */
+#define H5E_NONE_MINOR (H5OPEN H5E_NONE_MINOR_g)
+H5_DLLVAR hid_t H5E_NONE_MINOR_g; /* No error */
+
+/* Group related errors */
+#define H5E_CANTOPENOBJ (H5OPEN H5E_CANTOPENOBJ_g)
+#define H5E_CANTCLOSEOBJ (H5OPEN H5E_CANTCLOSEOBJ_g)
+#define H5E_COMPLEN (H5OPEN H5E_COMPLEN_g)
+#define H5E_PATH (H5OPEN H5E_PATH_g)
+H5_DLLVAR hid_t H5E_CANTOPENOBJ_g; /* Can't open object */
+H5_DLLVAR hid_t H5E_CANTCLOSEOBJ_g; /* Can't close object */
+H5_DLLVAR hid_t H5E_COMPLEN_g; /* Name component is too long */
+H5_DLLVAR hid_t H5E_PATH_g; /* Problem with path to object */
+
+/* Function entry/exit interface errors */
+#define H5E_CANTINIT (H5OPEN H5E_CANTINIT_g)
+#define H5E_ALREADYINIT (H5OPEN H5E_ALREADYINIT_g)
+#define H5E_CANTRELEASE (H5OPEN H5E_CANTRELEASE_g)
+H5_DLLVAR hid_t H5E_CANTINIT_g; /* Unable to initialize object */
+H5_DLLVAR hid_t H5E_ALREADYINIT_g; /* Object already initialized */
+H5_DLLVAR hid_t H5E_CANTRELEASE_g; /* Unable to release object */
+
+/* Parallel MPI errors */
+#define H5E_MPI (H5OPEN H5E_MPI_g)
+#define H5E_MPIERRSTR (H5OPEN H5E_MPIERRSTR_g)
+#define H5E_CANTRECV (H5OPEN H5E_CANTRECV_g)
+H5_DLLVAR hid_t H5E_MPI_g; /* Some MPI function failed */
+H5_DLLVAR hid_t H5E_MPIERRSTR_g; /* MPI Error String */
+H5_DLLVAR hid_t H5E_CANTRECV_g; /* Can't receive data */
+
+/* Object atom related errors */
+#define H5E_BADATOM (H5OPEN H5E_BADATOM_g)
+#define H5E_BADGROUP (H5OPEN H5E_BADGROUP_g)
+#define H5E_CANTREGISTER (H5OPEN H5E_CANTREGISTER_g)
+#define H5E_CANTINC (H5OPEN H5E_CANTINC_g)
+#define H5E_CANTDEC (H5OPEN H5E_CANTDEC_g)
+#define H5E_NOIDS (H5OPEN H5E_NOIDS_g)
+H5_DLLVAR hid_t H5E_BADATOM_g; /* Unable to find atom information (already closed?) */
+H5_DLLVAR hid_t H5E_BADGROUP_g; /* Unable to find ID group information */
+H5_DLLVAR hid_t H5E_CANTREGISTER_g; /* Unable to register new atom */
+H5_DLLVAR hid_t H5E_CANTINC_g; /* Unable to increment reference count */
+H5_DLLVAR hid_t H5E_CANTDEC_g; /* Unable to decrement reference count */
+H5_DLLVAR hid_t H5E_NOIDS_g; /* Out of IDs for group */
+
/* Generic low-level file I/O errors */
#define H5E_SEEKERROR (H5OPEN H5E_SEEKERROR_g)
#define H5E_READERROR (H5OPEN H5E_READERROR_g)
@@ -109,92 +153,6 @@ H5_DLLVAR hid_t H5E_CLOSEERROR_g; /* Close failed */
H5_DLLVAR hid_t H5E_OVERFLOW_g; /* Address overflowed */
H5_DLLVAR hid_t H5E_FCNTL_g; /* File control (fcntl) failed */
-/* Resource errors */
-#define H5E_NOSPACE (H5OPEN H5E_NOSPACE_g)
-#define H5E_CANTALLOC (H5OPEN H5E_CANTALLOC_g)
-#define H5E_CANTCOPY (H5OPEN H5E_CANTCOPY_g)
-#define H5E_CANTFREE (H5OPEN H5E_CANTFREE_g)
-#define H5E_ALREADYEXISTS (H5OPEN H5E_ALREADYEXISTS_g)
-#define H5E_CANTLOCK (H5OPEN H5E_CANTLOCK_g)
-#define H5E_CANTUNLOCK (H5OPEN H5E_CANTUNLOCK_g)
-#define H5E_CANTGC (H5OPEN H5E_CANTGC_g)
-#define H5E_CANTGETSIZE (H5OPEN H5E_CANTGETSIZE_g)
-#define H5E_OBJOPEN (H5OPEN H5E_OBJOPEN_g)
-H5_DLLVAR hid_t H5E_NOSPACE_g; /* No space available for allocation */
-H5_DLLVAR hid_t H5E_CANTALLOC_g; /* Can't allocate space */
-H5_DLLVAR hid_t H5E_CANTCOPY_g; /* Unable to copy object */
-H5_DLLVAR hid_t H5E_CANTFREE_g; /* Unable to free object */
-H5_DLLVAR hid_t H5E_ALREADYEXISTS_g; /* Object already exists */
-H5_DLLVAR hid_t H5E_CANTLOCK_g; /* Unable to lock object */
-H5_DLLVAR hid_t H5E_CANTUNLOCK_g; /* Unable to unlock object */
-H5_DLLVAR hid_t H5E_CANTGC_g; /* Unable to garbage collect */
-H5_DLLVAR hid_t H5E_CANTGETSIZE_g; /* Unable to compute size */
-H5_DLLVAR hid_t H5E_OBJOPEN_g; /* Object is already open */
-
-/* Heap errors */
-#define H5E_CANTRESTORE (H5OPEN H5E_CANTRESTORE_g)
-#define H5E_CANTCOMPUTE (H5OPEN H5E_CANTCOMPUTE_g)
-#define H5E_CANTEXTEND (H5OPEN H5E_CANTEXTEND_g)
-#define H5E_CANTATTACH (H5OPEN H5E_CANTATTACH_g)
-#define H5E_CANTUPDATE (H5OPEN H5E_CANTUPDATE_g)
-#define H5E_CANTOPERATE (H5OPEN H5E_CANTOPERATE_g)
-H5_DLLVAR hid_t H5E_CANTRESTORE_g; /* Can't restore condition */
-H5_DLLVAR hid_t H5E_CANTCOMPUTE_g; /* Can't compute value */
-H5_DLLVAR hid_t H5E_CANTEXTEND_g; /* Can't extend heap's space */
-H5_DLLVAR hid_t H5E_CANTATTACH_g; /* Can't attach object */
-H5_DLLVAR hid_t H5E_CANTUPDATE_g; /* Can't update object */
-H5_DLLVAR hid_t H5E_CANTOPERATE_g; /* Can't operate on object */
-
-/* Function entry/exit interface errors */
-#define H5E_CANTINIT (H5OPEN H5E_CANTINIT_g)
-#define H5E_ALREADYINIT (H5OPEN H5E_ALREADYINIT_g)
-#define H5E_CANTRELEASE (H5OPEN H5E_CANTRELEASE_g)
-H5_DLLVAR hid_t H5E_CANTINIT_g; /* Unable to initialize object */
-H5_DLLVAR hid_t H5E_ALREADYINIT_g; /* Object already initialized */
-H5_DLLVAR hid_t H5E_CANTRELEASE_g; /* Unable to release object */
-
-/* Property list errors */
-#define H5E_CANTGET (H5OPEN H5E_CANTGET_g)
-#define H5E_CANTSET (H5OPEN H5E_CANTSET_g)
-#define H5E_DUPCLASS (H5OPEN H5E_DUPCLASS_g)
-#define H5E_SETDISALLOWED (H5OPEN H5E_SETDISALLOWED_g)
-H5_DLLVAR hid_t H5E_CANTGET_g; /* Can't get value */
-H5_DLLVAR hid_t H5E_CANTSET_g; /* Can't set value */
-H5_DLLVAR hid_t H5E_DUPCLASS_g; /* Duplicate class name in parent class */
-H5_DLLVAR hid_t H5E_SETDISALLOWED_g; /* Disallowed operation */
-
-/* Free space errors */
-#define H5E_CANTMERGE (H5OPEN H5E_CANTMERGE_g)
-#define H5E_CANTREVIVE (H5OPEN H5E_CANTREVIVE_g)
-#define H5E_CANTSHRINK (H5OPEN H5E_CANTSHRINK_g)
-H5_DLLVAR hid_t H5E_CANTMERGE_g; /* Can't merge objects */
-H5_DLLVAR hid_t H5E_CANTREVIVE_g; /* Can't revive object */
-H5_DLLVAR hid_t H5E_CANTSHRINK_g; /* Can't shrink container */
-
-/* Object header related errors */
-#define H5E_LINKCOUNT (H5OPEN H5E_LINKCOUNT_g)
-#define H5E_VERSION (H5OPEN H5E_VERSION_g)
-#define H5E_ALIGNMENT (H5OPEN H5E_ALIGNMENT_g)
-#define H5E_BADMESG (H5OPEN H5E_BADMESG_g)
-#define H5E_CANTDELETE (H5OPEN H5E_CANTDELETE_g)
-#define H5E_BADITER (H5OPEN H5E_BADITER_g)
-#define H5E_CANTPACK (H5OPEN H5E_CANTPACK_g)
-#define H5E_CANTRESET (H5OPEN H5E_CANTRESET_g)
-#define H5E_CANTRENAME (H5OPEN H5E_CANTRENAME_g)
-H5_DLLVAR hid_t H5E_LINKCOUNT_g; /* Bad object header link count */
-H5_DLLVAR hid_t H5E_VERSION_g; /* Wrong version number */
-H5_DLLVAR hid_t H5E_ALIGNMENT_g; /* Alignment error */
-H5_DLLVAR hid_t H5E_BADMESG_g; /* Unrecognized message */
-H5_DLLVAR hid_t H5E_CANTDELETE_g; /* Can't delete message */
-H5_DLLVAR hid_t H5E_BADITER_g; /* Iteration failed */
-H5_DLLVAR hid_t H5E_CANTPACK_g; /* Can't pack messages */
-H5_DLLVAR hid_t H5E_CANTRESET_g; /* Can't reset object */
-H5_DLLVAR hid_t H5E_CANTRENAME_g; /* Unable to rename object */
-
-/* System level errors */
-#define H5E_SYSERRSTR (H5OPEN H5E_SYSERRSTR_g)
-H5_DLLVAR hid_t H5E_SYSERRSTR_g; /* System error message */
-
/* I/O pipeline errors */
#define H5E_NOFILTER (H5OPEN H5E_NOFILTER_g)
#define H5E_CALLBACK (H5OPEN H5E_CALLBACK_g)
@@ -209,19 +167,15 @@ H5_DLLVAR hid_t H5E_SETLOCAL_g; /* Error from filter 'set local' callback *
H5_DLLVAR hid_t H5E_NOENCODER_g; /* Filter present but encoding disabled */
H5_DLLVAR hid_t H5E_CANTFILTER_g; /* Filter operation failed */
-/* Group related errors */
-#define H5E_CANTOPENOBJ (H5OPEN H5E_CANTOPENOBJ_g)
-#define H5E_CANTCLOSEOBJ (H5OPEN H5E_CANTCLOSEOBJ_g)
-#define H5E_COMPLEN (H5OPEN H5E_COMPLEN_g)
-#define H5E_PATH (H5OPEN H5E_PATH_g)
-H5_DLLVAR hid_t H5E_CANTOPENOBJ_g; /* Can't open object */
-H5_DLLVAR hid_t H5E_CANTCLOSEOBJ_g; /* Can't close object */
-H5_DLLVAR hid_t H5E_COMPLEN_g; /* Name component is too long */
-H5_DLLVAR hid_t H5E_PATH_g; /* Problem with path to object */
-
-/* No error */
-#define H5E_NONE_MINOR (H5OPEN H5E_NONE_MINOR_g)
-H5_DLLVAR hid_t H5E_NONE_MINOR_g; /* No error */
+/* Property list errors */
+#define H5E_CANTGET (H5OPEN H5E_CANTGET_g)
+#define H5E_CANTSET (H5OPEN H5E_CANTSET_g)
+#define H5E_DUPCLASS (H5OPEN H5E_DUPCLASS_g)
+#define H5E_SETDISALLOWED (H5OPEN H5E_SETDISALLOWED_g)
+H5_DLLVAR hid_t H5E_CANTGET_g; /* Can't get value */
+H5_DLLVAR hid_t H5E_CANTSET_g; /* Can't set value */
+H5_DLLVAR hid_t H5E_DUPCLASS_g; /* Duplicate class name in parent class */
+H5_DLLVAR hid_t H5E_SETDISALLOWED_g; /* Disallowed operation */
/* Plugin errors */
#define H5E_OPENERROR (H5OPEN H5E_OPENERROR_g)
@@ -247,20 +201,6 @@ H5_DLLVAR hid_t H5E_BADFILE_g; /* Bad file ID accessed */
H5_DLLVAR hid_t H5E_TRUNCATED_g; /* File has been truncated */
H5_DLLVAR hid_t H5E_MOUNT_g; /* File mount error */
-/* Object atom related errors */
-#define H5E_BADATOM (H5OPEN H5E_BADATOM_g)
-#define H5E_BADGROUP (H5OPEN H5E_BADGROUP_g)
-#define H5E_CANTREGISTER (H5OPEN H5E_CANTREGISTER_g)
-#define H5E_CANTINC (H5OPEN H5E_CANTINC_g)
-#define H5E_CANTDEC (H5OPEN H5E_CANTDEC_g)
-#define H5E_NOIDS (H5OPEN H5E_NOIDS_g)
-H5_DLLVAR hid_t H5E_BADATOM_g; /* Unable to find atom information (already closed?) */
-H5_DLLVAR hid_t H5E_BADGROUP_g; /* Unable to find ID group information */
-H5_DLLVAR hid_t H5E_CANTREGISTER_g; /* Unable to register new atom */
-H5_DLLVAR hid_t H5E_CANTINC_g; /* Unable to increment reference count */
-H5_DLLVAR hid_t H5E_CANTDEC_g; /* Unable to decrement reference count */
-H5_DLLVAR hid_t H5E_NOIDS_g; /* Out of IDs for group */
-
/* Cache related errors */
#define H5E_CANTFLUSH (H5OPEN H5E_CANTFLUSH_g)
#define H5E_CANTSERIALIZE (H5OPEN H5E_CANTSERIALIZE_g)
@@ -301,6 +241,72 @@ H5_DLLVAR hid_t H5E_CANTDEPEND_g; /* Unable to create a flush dependency */
H5_DLLVAR hid_t H5E_CANTUNDEPEND_g; /* Unable to destroy a flush dependency */
H5_DLLVAR hid_t H5E_CANTNOTIFY_g; /* Unable to notify object about action */
+/* B-tree related errors */
+#define H5E_NOTFOUND (H5OPEN H5E_NOTFOUND_g)
+#define H5E_EXISTS (H5OPEN H5E_EXISTS_g)
+#define H5E_CANTENCODE (H5OPEN H5E_CANTENCODE_g)
+#define H5E_CANTDECODE (H5OPEN H5E_CANTDECODE_g)
+#define H5E_CANTSPLIT (H5OPEN H5E_CANTSPLIT_g)
+#define H5E_CANTREDISTRIBUTE (H5OPEN H5E_CANTREDISTRIBUTE_g)
+#define H5E_CANTSWAP (H5OPEN H5E_CANTSWAP_g)
+#define H5E_CANTINSERT (H5OPEN H5E_CANTINSERT_g)
+#define H5E_CANTLIST (H5OPEN H5E_CANTLIST_g)
+#define H5E_CANTMODIFY (H5OPEN H5E_CANTMODIFY_g)
+#define H5E_CANTREMOVE (H5OPEN H5E_CANTREMOVE_g)
+H5_DLLVAR hid_t H5E_NOTFOUND_g; /* Object not found */
+H5_DLLVAR hid_t H5E_EXISTS_g; /* Object already exists */
+H5_DLLVAR hid_t H5E_CANTENCODE_g; /* Unable to encode value */
+H5_DLLVAR hid_t H5E_CANTDECODE_g; /* Unable to decode value */
+H5_DLLVAR hid_t H5E_CANTSPLIT_g; /* Unable to split node */
+H5_DLLVAR hid_t H5E_CANTREDISTRIBUTE_g; /* Unable to redistribute records */
+H5_DLLVAR hid_t H5E_CANTSWAP_g; /* Unable to swap records */
+H5_DLLVAR hid_t H5E_CANTINSERT_g; /* Unable to insert object */
+H5_DLLVAR hid_t H5E_CANTLIST_g; /* Unable to list node */
+H5_DLLVAR hid_t H5E_CANTMODIFY_g; /* Unable to modify record */
+H5_DLLVAR hid_t H5E_CANTREMOVE_g; /* Unable to remove object */
+
+/* Resource errors */
+#define H5E_NOSPACE (H5OPEN H5E_NOSPACE_g)
+#define H5E_CANTALLOC (H5OPEN H5E_CANTALLOC_g)
+#define H5E_CANTCOPY (H5OPEN H5E_CANTCOPY_g)
+#define H5E_CANTFREE (H5OPEN H5E_CANTFREE_g)
+#define H5E_ALREADYEXISTS (H5OPEN H5E_ALREADYEXISTS_g)
+#define H5E_CANTLOCK (H5OPEN H5E_CANTLOCK_g)
+#define H5E_CANTUNLOCK (H5OPEN H5E_CANTUNLOCK_g)
+#define H5E_CANTGC (H5OPEN H5E_CANTGC_g)
+#define H5E_CANTGETSIZE (H5OPEN H5E_CANTGETSIZE_g)
+#define H5E_OBJOPEN (H5OPEN H5E_OBJOPEN_g)
+H5_DLLVAR hid_t H5E_NOSPACE_g; /* No space available for allocation */
+H5_DLLVAR hid_t H5E_CANTALLOC_g; /* Can't allocate space */
+H5_DLLVAR hid_t H5E_CANTCOPY_g; /* Unable to copy object */
+H5_DLLVAR hid_t H5E_CANTFREE_g; /* Unable to free object */
+H5_DLLVAR hid_t H5E_ALREADYEXISTS_g; /* Object already exists */
+H5_DLLVAR hid_t H5E_CANTLOCK_g; /* Unable to lock object */
+H5_DLLVAR hid_t H5E_CANTUNLOCK_g; /* Unable to unlock object */
+H5_DLLVAR hid_t H5E_CANTGC_g; /* Unable to garbage collect */
+H5_DLLVAR hid_t H5E_CANTGETSIZE_g; /* Unable to compute size */
+H5_DLLVAR hid_t H5E_OBJOPEN_g; /* Object is already open */
+
+/* Object header related errors */
+#define H5E_LINKCOUNT (H5OPEN H5E_LINKCOUNT_g)
+#define H5E_VERSION (H5OPEN H5E_VERSION_g)
+#define H5E_ALIGNMENT (H5OPEN H5E_ALIGNMENT_g)
+#define H5E_BADMESG (H5OPEN H5E_BADMESG_g)
+#define H5E_CANTDELETE (H5OPEN H5E_CANTDELETE_g)
+#define H5E_BADITER (H5OPEN H5E_BADITER_g)
+#define H5E_CANTPACK (H5OPEN H5E_CANTPACK_g)
+#define H5E_CANTRESET (H5OPEN H5E_CANTRESET_g)
+#define H5E_CANTRENAME (H5OPEN H5E_CANTRENAME_g)
+H5_DLLVAR hid_t H5E_LINKCOUNT_g; /* Bad object header link count */
+H5_DLLVAR hid_t H5E_VERSION_g; /* Wrong version number */
+H5_DLLVAR hid_t H5E_ALIGNMENT_g; /* Alignment error */
+H5_DLLVAR hid_t H5E_BADMESG_g; /* Unrecognized message */
+H5_DLLVAR hid_t H5E_CANTDELETE_g; /* Can't delete message */
+H5_DLLVAR hid_t H5E_BADITER_g; /* Iteration failed */
+H5_DLLVAR hid_t H5E_CANTPACK_g; /* Can't pack messages */
+H5_DLLVAR hid_t H5E_CANTRESET_g; /* Can't reset object */
+H5_DLLVAR hid_t H5E_CANTRENAME_g; /* Unable to rename object */
+
/* Link related errors */
#define H5E_TRAVERSE (H5OPEN H5E_TRAVERSE_g)
#define H5E_NLINKS (H5OPEN H5E_NLINKS_g)
@@ -313,13 +319,29 @@ H5_DLLVAR hid_t H5E_NOTREGISTERED_g; /* Link class not registered */
H5_DLLVAR hid_t H5E_CANTMOVE_g; /* Can't move object */
H5_DLLVAR hid_t H5E_CANTSORT_g; /* Can't sort objects */
-/* Parallel MPI errors */
-#define H5E_MPI (H5OPEN H5E_MPI_g)
-#define H5E_MPIERRSTR (H5OPEN H5E_MPIERRSTR_g)
-#define H5E_CANTRECV (H5OPEN H5E_CANTRECV_g)
-H5_DLLVAR hid_t H5E_MPI_g; /* Some MPI function failed */
-H5_DLLVAR hid_t H5E_MPIERRSTR_g; /* MPI Error String */
-H5_DLLVAR hid_t H5E_CANTRECV_g; /* Can't receive data */
+/* Argument errors */
+#define H5E_UNINITIALIZED (H5OPEN H5E_UNINITIALIZED_g)
+#define H5E_UNSUPPORTED (H5OPEN H5E_UNSUPPORTED_g)
+#define H5E_BADTYPE (H5OPEN H5E_BADTYPE_g)
+#define H5E_BADRANGE (H5OPEN H5E_BADRANGE_g)
+#define H5E_BADVALUE (H5OPEN H5E_BADVALUE_g)
+H5_DLLVAR hid_t H5E_UNINITIALIZED_g; /* Information is uinitialized */
+H5_DLLVAR hid_t H5E_UNSUPPORTED_g; /* Feature is unsupported */
+H5_DLLVAR hid_t H5E_BADTYPE_g; /* Inappropriate type */
+H5_DLLVAR hid_t H5E_BADRANGE_g; /* Out of range */
+H5_DLLVAR hid_t H5E_BADVALUE_g; /* Bad value */
+
+/* System level errors */
+#define H5E_SYSERRSTR (H5OPEN H5E_SYSERRSTR_g)
+H5_DLLVAR hid_t H5E_SYSERRSTR_g; /* System error message */
+
+/* Free space errors */
+#define H5E_CANTMERGE (H5OPEN H5E_CANTMERGE_g)
+#define H5E_CANTREVIVE (H5OPEN H5E_CANTREVIVE_g)
+#define H5E_CANTSHRINK (H5OPEN H5E_CANTSHRINK_g)
+H5_DLLVAR hid_t H5E_CANTMERGE_g; /* Can't merge objects */
+H5_DLLVAR hid_t H5E_CANTREVIVE_g; /* Can't revive object */
+H5_DLLVAR hid_t H5E_CANTSHRINK_g; /* Can't shrink container */
/* Dataspace errors */
#define H5E_CANTCLIP (H5OPEN H5E_CANTCLIP_g)
@@ -328,48 +350,28 @@ H5_DLLVAR hid_t H5E_CANTRECV_g; /* Can't receive data */
#define H5E_CANTNEXT (H5OPEN H5E_CANTNEXT_g)
#define H5E_BADSELECT (H5OPEN H5E_BADSELECT_g)
#define H5E_CANTCOMPARE (H5OPEN H5E_CANTCOMPARE_g)
+#define H5E_CANTAPPEND (H5OPEN H5E_CANTAPPEND_g)
H5_DLLVAR hid_t H5E_CANTCLIP_g; /* Can't clip hyperslab region */
H5_DLLVAR hid_t H5E_CANTCOUNT_g; /* Can't count elements */
H5_DLLVAR hid_t H5E_CANTSELECT_g; /* Can't select hyperslab */
H5_DLLVAR hid_t H5E_CANTNEXT_g; /* Can't move to next iterator location */
H5_DLLVAR hid_t H5E_BADSELECT_g; /* Invalid selection */
H5_DLLVAR hid_t H5E_CANTCOMPARE_g; /* Can't compare objects */
+H5_DLLVAR hid_t H5E_CANTAPPEND_g; /* Can't append object */
-/* Argument errors */
-#define H5E_UNINITIALIZED (H5OPEN H5E_UNINITIALIZED_g)
-#define H5E_UNSUPPORTED (H5OPEN H5E_UNSUPPORTED_g)
-#define H5E_BADTYPE (H5OPEN H5E_BADTYPE_g)
-#define H5E_BADRANGE (H5OPEN H5E_BADRANGE_g)
-#define H5E_BADVALUE (H5OPEN H5E_BADVALUE_g)
-H5_DLLVAR hid_t H5E_UNINITIALIZED_g; /* Information is uinitialized */
-H5_DLLVAR hid_t H5E_UNSUPPORTED_g; /* Feature is unsupported */
-H5_DLLVAR hid_t H5E_BADTYPE_g; /* Inappropriate type */
-H5_DLLVAR hid_t H5E_BADRANGE_g; /* Out of range */
-H5_DLLVAR hid_t H5E_BADVALUE_g; /* Bad value */
-
-/* B-tree related errors */
-#define H5E_NOTFOUND (H5OPEN H5E_NOTFOUND_g)
-#define H5E_EXISTS (H5OPEN H5E_EXISTS_g)
-#define H5E_CANTENCODE (H5OPEN H5E_CANTENCODE_g)
-#define H5E_CANTDECODE (H5OPEN H5E_CANTDECODE_g)
-#define H5E_CANTSPLIT (H5OPEN H5E_CANTSPLIT_g)
-#define H5E_CANTREDISTRIBUTE (H5OPEN H5E_CANTREDISTRIBUTE_g)
-#define H5E_CANTSWAP (H5OPEN H5E_CANTSWAP_g)
-#define H5E_CANTINSERT (H5OPEN H5E_CANTINSERT_g)
-#define H5E_CANTLIST (H5OPEN H5E_CANTLIST_g)
-#define H5E_CANTMODIFY (H5OPEN H5E_CANTMODIFY_g)
-#define H5E_CANTREMOVE (H5OPEN H5E_CANTREMOVE_g)
-H5_DLLVAR hid_t H5E_NOTFOUND_g; /* Object not found */
-H5_DLLVAR hid_t H5E_EXISTS_g; /* Object already exists */
-H5_DLLVAR hid_t H5E_CANTENCODE_g; /* Unable to encode value */
-H5_DLLVAR hid_t H5E_CANTDECODE_g; /* Unable to decode value */
-H5_DLLVAR hid_t H5E_CANTSPLIT_g; /* Unable to split node */
-H5_DLLVAR hid_t H5E_CANTREDISTRIBUTE_g; /* Unable to redistribute records */
-H5_DLLVAR hid_t H5E_CANTSWAP_g; /* Unable to swap records */
-H5_DLLVAR hid_t H5E_CANTINSERT_g; /* Unable to insert object */
-H5_DLLVAR hid_t H5E_CANTLIST_g; /* Unable to list node */
-H5_DLLVAR hid_t H5E_CANTMODIFY_g; /* Unable to modify record */
-H5_DLLVAR hid_t H5E_CANTREMOVE_g; /* Unable to remove object */
+/* Heap errors */
+#define H5E_CANTRESTORE (H5OPEN H5E_CANTRESTORE_g)
+#define H5E_CANTCOMPUTE (H5OPEN H5E_CANTCOMPUTE_g)
+#define H5E_CANTEXTEND (H5OPEN H5E_CANTEXTEND_g)
+#define H5E_CANTATTACH (H5OPEN H5E_CANTATTACH_g)
+#define H5E_CANTUPDATE (H5OPEN H5E_CANTUPDATE_g)
+#define H5E_CANTOPERATE (H5OPEN H5E_CANTOPERATE_g)
+H5_DLLVAR hid_t H5E_CANTRESTORE_g; /* Can't restore condition */
+H5_DLLVAR hid_t H5E_CANTCOMPUTE_g; /* Can't compute value */
+H5_DLLVAR hid_t H5E_CANTEXTEND_g; /* Can't extend heap's space */
+H5_DLLVAR hid_t H5E_CANTATTACH_g; /* Can't attach object */
+H5_DLLVAR hid_t H5E_CANTUPDATE_g; /* Can't update object */
+H5_DLLVAR hid_t H5E_CANTOPERATE_g; /* Can't operate on object */
/* Datatype conversion errors */
#define H5E_CANTCONVERT (H5OPEN H5E_CANTCONVERT_g)
diff --git a/src/H5Eterm.h b/src/H5Eterm.h
index 5db503c..2e99bc6 100644
--- a/src/H5Eterm.h
+++ b/src/H5Eterm.h
@@ -22,100 +22,77 @@
/* Reset major error IDs */
-H5E_FUNC_g=
-H5E_FILE_g=
-H5E_SOHM_g=
-H5E_SYM_g=
-H5E_PLUGIN_g=
-H5E_VFL_g=
+H5E_EARRAY_g=
+H5E_PLIST_g=
+H5E_NONE_MAJOR_g=
+H5E_FSPACE_g=
+H5E_STORAGE_g=
+H5E_CACHE_g=
+H5E_IO_g=
H5E_INTERNAL_g=
-H5E_BTREE_g=
-H5E_REFERENCE_g=
+H5E_SYM_g=
H5E_DATASPACE_g=
-H5E_RESOURCE_g=
-H5E_RS_g=
H5E_FARRAY_g=
-H5E_HEAP_g=
-H5E_ATTR_g=
-H5E_IO_g=
+H5E_OHDR_g=
+H5E_SOHM_g=
H5E_EFL_g=
-H5E_TST_g=
-H5E_FSPACE_g=
+H5E_SLIST_g=
+H5E_BTREE_g=
+H5E_PLUGIN_g=
+H5E_ATOM_g=
+H5E_FILE_g=
+H5E_HEAP_g=
+H5E_VFL_g=
H5E_DATASET_g=
-H5E_STORAGE_g=
H5E_LINK_g=
-H5E_PLIST_g=
-H5E_DATATYPE_g=
-H5E_OHDR_g=
-H5E_ATOM_g=
-H5E_NONE_MAJOR_g=
-H5E_SLIST_g=
-H5E_ARGS_g=
-H5E_EARRAY_g=
H5E_PLINE_g=
+H5E_FUNC_g=
+H5E_TST_g=
+H5E_ATTR_g=
H5E_ERROR_g=
-H5E_CACHE_g= (-1);
+H5E_ARGS_g=
+H5E_RESOURCE_g=
+H5E_DATATYPE_g=
+H5E_RS_g=
+H5E_REFERENCE_g= (-1);
/* Reset minor error IDs */
-/* Generic low-level file I/O errors */
-H5E_SEEKERROR_g=
-H5E_READERROR_g=
-H5E_WRITEERROR_g=
-H5E_CLOSEERROR_g=
-H5E_OVERFLOW_g=
-H5E_FCNTL_g=
-
-/* Resource errors */
-H5E_NOSPACE_g=
-H5E_CANTALLOC_g=
-H5E_CANTCOPY_g=
-H5E_CANTFREE_g=
-H5E_ALREADYEXISTS_g=
-H5E_CANTLOCK_g=
-H5E_CANTUNLOCK_g=
-H5E_CANTGC_g=
-H5E_CANTGETSIZE_g=
-H5E_OBJOPEN_g=
+/* No error */
+H5E_NONE_MINOR_g=
-/* Heap errors */
-H5E_CANTRESTORE_g=
-H5E_CANTCOMPUTE_g=
-H5E_CANTEXTEND_g=
-H5E_CANTATTACH_g=
-H5E_CANTUPDATE_g=
-H5E_CANTOPERATE_g=
+/* Group related errors */
+H5E_CANTOPENOBJ_g=
+H5E_CANTCLOSEOBJ_g=
+H5E_COMPLEN_g=
+H5E_PATH_g=
/* Function entry/exit interface errors */
H5E_CANTINIT_g=
H5E_ALREADYINIT_g=
H5E_CANTRELEASE_g=
-/* Property list errors */
-H5E_CANTGET_g=
-H5E_CANTSET_g=
-H5E_DUPCLASS_g=
-H5E_SETDISALLOWED_g=
-
-/* Free space errors */
-H5E_CANTMERGE_g=
-H5E_CANTREVIVE_g=
-H5E_CANTSHRINK_g=
+/* Parallel MPI errors */
+H5E_MPI_g=
+H5E_MPIERRSTR_g=
+H5E_CANTRECV_g=
-/* Object header related errors */
-H5E_LINKCOUNT_g=
-H5E_VERSION_g=
-H5E_ALIGNMENT_g=
-H5E_BADMESG_g=
-H5E_CANTDELETE_g=
-H5E_BADITER_g=
-H5E_CANTPACK_g=
-H5E_CANTRESET_g=
-H5E_CANTRENAME_g=
+/* Object atom related errors */
+H5E_BADATOM_g=
+H5E_BADGROUP_g=
+H5E_CANTREGISTER_g=
+H5E_CANTINC_g=
+H5E_CANTDEC_g=
+H5E_NOIDS_g=
-/* System level errors */
-H5E_SYSERRSTR_g=
+/* Generic low-level file I/O errors */
+H5E_SEEKERROR_g=
+H5E_READERROR_g=
+H5E_WRITEERROR_g=
+H5E_CLOSEERROR_g=
+H5E_OVERFLOW_g=
+H5E_FCNTL_g=
/* I/O pipeline errors */
H5E_NOFILTER_g=
@@ -125,14 +102,11 @@ H5E_SETLOCAL_g=
H5E_NOENCODER_g=
H5E_CANTFILTER_g=
-/* Group related errors */
-H5E_CANTOPENOBJ_g=
-H5E_CANTCLOSEOBJ_g=
-H5E_COMPLEN_g=
-H5E_PATH_g=
-
-/* No error */
-H5E_NONE_MINOR_g=
+/* Property list errors */
+H5E_CANTGET_g=
+H5E_CANTSET_g=
+H5E_DUPCLASS_g=
+H5E_SETDISALLOWED_g=
/* Plugin errors */
H5E_OPENERROR_g=
@@ -148,14 +122,6 @@ H5E_BADFILE_g=
H5E_TRUNCATED_g=
H5E_MOUNT_g=
-/* Object atom related errors */
-H5E_BADATOM_g=
-H5E_BADGROUP_g=
-H5E_CANTREGISTER_g=
-H5E_CANTINC_g=
-H5E_CANTDEC_g=
-H5E_NOIDS_g=
-
/* Cache related errors */
H5E_CANTFLUSH_g=
H5E_CANTSERIALIZE_g=
@@ -177,6 +143,42 @@ H5E_CANTDEPEND_g=
H5E_CANTUNDEPEND_g=
H5E_CANTNOTIFY_g=
+/* B-tree related errors */
+H5E_NOTFOUND_g=
+H5E_EXISTS_g=
+H5E_CANTENCODE_g=
+H5E_CANTDECODE_g=
+H5E_CANTSPLIT_g=
+H5E_CANTREDISTRIBUTE_g=
+H5E_CANTSWAP_g=
+H5E_CANTINSERT_g=
+H5E_CANTLIST_g=
+H5E_CANTMODIFY_g=
+H5E_CANTREMOVE_g=
+
+/* Resource errors */
+H5E_NOSPACE_g=
+H5E_CANTALLOC_g=
+H5E_CANTCOPY_g=
+H5E_CANTFREE_g=
+H5E_ALREADYEXISTS_g=
+H5E_CANTLOCK_g=
+H5E_CANTUNLOCK_g=
+H5E_CANTGC_g=
+H5E_CANTGETSIZE_g=
+H5E_OBJOPEN_g=
+
+/* Object header related errors */
+H5E_LINKCOUNT_g=
+H5E_VERSION_g=
+H5E_ALIGNMENT_g=
+H5E_BADMESG_g=
+H5E_CANTDELETE_g=
+H5E_BADITER_g=
+H5E_CANTPACK_g=
+H5E_CANTRESET_g=
+H5E_CANTRENAME_g=
+
/* Link related errors */
H5E_TRAVERSE_g=
H5E_NLINKS_g=
@@ -184,10 +186,20 @@ H5E_NOTREGISTERED_g=
H5E_CANTMOVE_g=
H5E_CANTSORT_g=
-/* Parallel MPI errors */
-H5E_MPI_g=
-H5E_MPIERRSTR_g=
-H5E_CANTRECV_g=
+/* Argument errors */
+H5E_UNINITIALIZED_g=
+H5E_UNSUPPORTED_g=
+H5E_BADTYPE_g=
+H5E_BADRANGE_g=
+H5E_BADVALUE_g=
+
+/* System level errors */
+H5E_SYSERRSTR_g=
+
+/* Free space errors */
+H5E_CANTMERGE_g=
+H5E_CANTREVIVE_g=
+H5E_CANTSHRINK_g=
/* Dataspace errors */
H5E_CANTCLIP_g=
@@ -195,27 +207,16 @@ H5E_CANTCOUNT_g=
H5E_CANTSELECT_g=
H5E_CANTNEXT_g=
H5E_BADSELECT_g=
-H5E_CANTCOMPARE_g=
-
-/* Argument errors */
-H5E_UNINITIALIZED_g=
-H5E_UNSUPPORTED_g=
-H5E_BADTYPE_g=
-H5E_BADRANGE_g=
-H5E_BADVALUE_g=
+H5E_CANTCOMPARE_g=
+H5E_CANTAPPEND_g=
-/* B-tree related errors */
-H5E_NOTFOUND_g=
-H5E_EXISTS_g=
-H5E_CANTENCODE_g=
-H5E_CANTDECODE_g=
-H5E_CANTSPLIT_g=
-H5E_CANTREDISTRIBUTE_g=
-H5E_CANTSWAP_g=
-H5E_CANTINSERT_g=
-H5E_CANTLIST_g=
-H5E_CANTMODIFY_g=
-H5E_CANTREMOVE_g=
+/* Heap errors */
+H5E_CANTRESTORE_g=
+H5E_CANTCOMPUTE_g=
+H5E_CANTEXTEND_g=
+H5E_CANTATTACH_g=
+H5E_CANTUPDATE_g=
+H5E_CANTOPERATE_g=
/* Datatype conversion errors */
H5E_CANTCONVERT_g=
diff --git a/src/H5Fint.c b/src/H5Fint.c
index 0e77349..c9e1ac0 100644
--- a/src/H5Fint.c
+++ b/src/H5Fint.c
@@ -1653,6 +1653,9 @@ done:
* then increments the pointer to the first byte after the
* address. An undefined value is stored as all 1's.
*
+ * Note this function is almost identical to H5F_size_encode.
+ * Changes should be made in both places.
+ *
* Return: void
*
* Programmer: Robb Matzke
@@ -1725,6 +1728,9 @@ H5F_addr_encode(const H5F_t *f, uint8_t **pp/*in,out*/, haddr_t addr)
* If the value read is all 1's then the address is returned
* with an undefined value.
*
+ * Note this function is almost identical to H5F_size_decode.
+ * Changes should be made in both places.
+ *
* Return: void
*
* Programmer: Robb Matzke
@@ -1815,6 +1821,127 @@ H5F_addr_decode(const H5F_t *f, const uint8_t **pp/*in,out*/, haddr_t *addr_p/*o
/*-------------------------------------------------------------------------
+ * Function: H5F_size_encode
+ *
+ * Purpose: Encodes a size into the buffer pointed to by *PP and then
+ * increments the pointer to the first byte after the size.
+ * An undefined value is stored as all 1's. If size cannot
+ * be HSIZE_UNDEF, then you can use H5F_ENCODE_LENGTH
+ * instead.
+ *
+ * Note this function is almost identical to H5F_addr_encode
+ * and H5F_addr_encode_len. Changes should be made in both
+ * places.
+ *
+ * Return: void
+ *
+ * Programmer: Neil Fortner
+ * Friday, April 10, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+H5F_size_encode(const H5F_t *f, uint8_t **pp/*in,out*/, hsize_t size)
+{
+ unsigned u; /* Local index variable */
+
+ /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */
+ FUNC_ENTER_NOAPI_NOINIT_NOERR
+
+ HDassert(f);
+ HDassert(pp && *pp);
+
+ if(size != HSIZE_UNDEF) {
+ for(u = 0; u < H5F_SIZEOF_SIZE(f); u++) {
+ *(*pp)++ = (uint8_t)(size & 0xff);
+ size >>= 8;
+ } /* end for */
+ HDassert("overflow" && 0 == size);
+ } /* end if */
+ else {
+ for(u = 0; u < H5F_SIZEOF_SIZE(f); u++)
+ *(*pp)++ = 0xff;
+ } /* end else */
+
+ FUNC_LEAVE_NOAPI_VOID
+} /* end H5F_size_encode() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5F_size_decode
+ *
+ * Purpose: Decodes a size from the buffer pointed to by *PP and
+ * updates the pointer to point to the next byte after the
+ * size.
+ *
+ * If the value read is all 1's then the size is returned
+ * with an undefined value. If size cannot be HSIZE_UNDEF,
+ * then you can use H5F_DECODE_LENGTH instead.
+ *
+ * Note this function is almost identical to H5F_addr_decode
+ * and H5F_addr_decode_len. Changes should be made in both
+ * places.
+ *
+ * Return: void
+ *
+ * Programmer: Neil Fortner
+ * Friday, April 10, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+H5F_size_decode(const H5F_t *f, const uint8_t **pp/*in,out*/,
+ hsize_t *size_p/*out*/)
+{
+ hbool_t all_zero = TRUE; /* True if address was all zeroes */
+ unsigned u; /* Local index variable */
+
+ /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */
+ FUNC_ENTER_NOAPI_NOINIT_NOERR
+
+ HDassert(f);
+ HDassert(pp && *pp);
+ HDassert(size_p);
+
+ /* Reset value in destination */
+ *size_p = 0;
+
+ /* Decode bytes from size */
+ for(u = 0; u < H5F_SIZEOF_SIZE(f); u++) {
+ uint8_t c; /* Local decoded byte */
+
+ /* Get decoded byte (and advance pointer) */
+ c = *(*pp)++;
+
+ /* Check for non-undefined size byte value */
+ if(c != 0xff)
+ all_zero = FALSE;
+
+ if(u < sizeof(*size_p)) {
+ haddr_t tmp = c; /* Local copy of size, for casting */
+
+ /* Shift decoded byte to correct position */
+ tmp <<= (u * 8); /*use tmp to get casting right */
+
+ /* Merge into already decoded bytes */
+ *size_p |= tmp;
+ } /* end if */
+ else
+ if(!all_zero)
+ HDassert(0 == **pp); /*overflow */
+ } /* end for */
+
+ /* If 'all_zero' is still TRUE, the size_p was entirely composed of '0xff'
+ * bytes, which is the encoded form of 'HSIZE_UNDEF', so set the destination
+ * to that value */
+ if(all_zero)
+ *size_p = HSIZE_UNDEF;
+
+ FUNC_LEAVE_NOAPI_VOID
+} /* end H5F_size_decode() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5F_set_grp_btree_shared
*
* Purpose: Set the grp_btree_shared field with a valid ref-count pointer.
diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h
index 36d7429..1533d2c 100644
--- a/src/H5Fprivate.h
+++ b/src/H5Fprivate.h
@@ -667,6 +667,12 @@ H5_DLL void H5F_addr_encode_len(size_t addr_len, uint8_t **pp, haddr_t addr);
H5_DLL void H5F_addr_decode(const H5F_t *f, const uint8_t **pp, haddr_t *addr_p);
H5_DLL void H5F_addr_decode_len(size_t addr_len, const uint8_t **pp, haddr_t *addr_p);
+/* Size-related functions */
+H5_DLL void H5F_size_encode(const H5F_t *f, uint8_t **pp/*in,out*/,
+ hsize_t size);
+H5_DLL void H5F_size_decode(const H5F_t *f, const uint8_t **pp/*in,out*/,
+ hsize_t *size_p/*out*/);
+
/* File access property list callbacks */
H5_DLL herr_t H5P_facc_close(hid_t dxpl_id, void *close_data);
diff --git a/src/H5HG.c b/src/H5HG.c
index 46b535d..4b2eb78 100644
--- a/src/H5HG.c
+++ b/src/H5HG.c
@@ -721,6 +721,50 @@ done:
/*-------------------------------------------------------------------------
+ * Function: H5HG_get_obj_size
+ *
+ * Purpose: Returns the size of a global heap object.
+ * Return: Success: Non-negative
+ *
+ * Failure: Negative
+ *
+ * Programmer: Neil Fortner
+ * Thursday, February 12, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5HG_get_obj_size(H5F_t *f, hid_t dxpl_id, H5HG_t *hobj, size_t *obj_size)
+{
+ H5HG_heap_t *heap = NULL; /* Pointer to global heap object */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_TAG(dxpl_id, H5AC__GLOBALHEAP_TAG, FAIL)
+
+ /* Check args */
+ HDassert(f);
+ HDassert(hobj);
+ HDassert(obj_size);
+
+ /* Load the heap */
+ if(NULL == (heap = H5HG_protect(f, dxpl_id, hobj->addr, H5AC__READ_ONLY_FLAG)))
+ HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect global heap")
+
+ HDassert(hobj->idx < heap->nused);
+ HDassert(heap->obj[hobj->idx].begin);
+
+ /* Set object size */
+ *obj_size = heap->obj[hobj->idx].size;
+
+done:
+ if(heap && H5AC_unprotect(f, dxpl_id, H5AC_GHEAP, hobj->addr, heap, H5AC__NO_FLAGS_SET) < 0)
+ HDONE_ERROR(H5E_HEAP, H5E_CANTUNPROTECT, FAIL, "unable to release object header")
+
+ FUNC_LEAVE_NOAPI_TAG(ret_value, FAIL)
+} /* end H5HG_get_obj_size() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5HG_remove
*
* Purpose: Removes the specified object from the global heap.
diff --git a/src/H5HGprivate.h b/src/H5HGprivate.h
index 3765c47..ad0da76 100644
--- a/src/H5HGprivate.h
+++ b/src/H5HGprivate.h
@@ -60,6 +60,7 @@ H5_DLL herr_t H5HG_insert(H5F_t *f, hid_t dxpl_id, size_t size, void *obj,
H5HG_t *hobj/*out*/);
H5_DLL void *H5HG_read(H5F_t *f, hid_t dxpl_id, H5HG_t *hobj, void *object, size_t *buf_size/*out*/);
H5_DLL int H5HG_link(H5F_t *f, hid_t dxpl_id, const H5HG_t *hobj, int adjust);
+H5_DLL herr_t H5HG_get_obj_size(H5F_t *f, hid_t dxpl_id, H5HG_t *hobj, size_t *obj_size);
H5_DLL herr_t H5HG_remove(H5F_t *f, hid_t dxpl_id, H5HG_t *hobj);
/* Support routines */
diff --git a/src/H5Olayout.c b/src/H5Olayout.c
index 8821694..6018539 100644
--- a/src/H5Olayout.c
+++ b/src/H5Olayout.c
@@ -100,6 +100,7 @@ H5O_layout_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *
unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p)
{
H5O_layout_t *mesg = NULL;
+ uint8_t *heap_block = NULL;
unsigned u;
void *ret_value; /* Return value */
@@ -190,7 +191,7 @@ H5O_layout_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *
} /* end if */
else {
/* Layout class */
- mesg->type = (H5D_layout_t)*p++;
+ mesg->type = mesg->storage.type = (H5D_layout_t)*p++;
/* Interpret the rest of the message according to the layout class */
switch(mesg->type) {
@@ -241,6 +242,137 @@ H5O_layout_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *
mesg->ops = H5D_LOPS_CHUNK;
break;
+ case H5D_VIRTUAL:
+ /* Heap information */
+ H5F_addr_decode(f, &p, &(mesg->storage.u.virt.serial_list_hobjid.addr));
+ UINT32DECODE(p, mesg->storage.u.virt.serial_list_hobjid.idx);
+
+ /* Initialize other fields */
+ mesg->storage.u.virt.list_nused = 0;
+ mesg->storage.u.virt.list = NULL;
+ mesg->storage.u.virt.list_nalloc = 0;
+ mesg->storage.u.virt.view = H5D_VDS_ERROR;
+ mesg->storage.u.virt.printf_gap = HSIZE_UNDEF;
+ mesg->storage.u.virt.source_fapl = -1;
+ mesg->storage.u.virt.source_dapl = -1;
+ mesg->storage.u.virt.init = FALSE;
+
+ /* Decode heap block if it exists */
+ if(mesg->storage.u.virt.serial_list_hobjid.addr != HADDR_UNDEF) {
+ const uint8_t *heap_block_p;
+ size_t block_size = 0;
+ size_t tmp_size;
+ hsize_t tmp_hsize;
+ uint32_t stored_chksum;
+ uint32_t computed_chksum;
+ size_t i;
+
+ /* Read heap */
+ if(NULL == (heap_block = (uint8_t *)H5HG_read(f, dxpl_id, &(mesg->storage.u.virt.serial_list_hobjid), NULL, &block_size)))
+ HGOTO_ERROR(H5E_OHDR, H5E_READERROR, NULL, "Unable to read global heap block")
+
+ heap_block_p = (const uint8_t *)heap_block;
+
+ /* Number of entries */
+ H5F_DECODE_LENGTH(f, heap_block_p, tmp_hsize)
+
+ /* Allocate entry list */
+ if(NULL == (mesg->storage.u.virt.list = (H5O_storage_virtual_ent_t *)H5MM_calloc((size_t)tmp_hsize * sizeof(H5O_storage_virtual_ent_t))))
+ HGOTO_ERROR(H5E_OHDR, H5E_RESOURCE, NULL, "unable to allocate heap block")
+ mesg->storage.u.virt.list_nalloc = (size_t)tmp_hsize;
+ mesg->storage.u.virt.list_nused = (size_t)tmp_hsize;
+
+ /* Decode each entry */
+ for(i = 0; i < mesg->storage.u.virt.list_nused; i++) {
+ /* Source file name */
+ tmp_size = HDstrlen((const char *)heap_block_p) + 1;
+ if(NULL == (mesg->storage.u.virt.list[i].source_file_name = (char *)H5MM_malloc(tmp_size)))
+ HGOTO_ERROR(H5E_OHDR, H5E_RESOURCE, NULL, "unable to allocate memory for source file name")
+ (void)HDmemcpy(mesg->storage.u.virt.list[i].source_file_name, heap_block_p, tmp_size);
+ heap_block_p += tmp_size;
+
+ /* Source dataset name */
+ tmp_size = HDstrlen((const char *)heap_block_p) + 1;
+ if(NULL == (mesg->storage.u.virt.list[i].source_dset_name = (char *)H5MM_malloc(tmp_size)))
+ HGOTO_ERROR(H5E_OHDR, H5E_RESOURCE, NULL, "unable to allocate memory for source dataset name")
+ (void)HDmemcpy(mesg->storage.u.virt.list[i].source_dset_name, heap_block_p, tmp_size);
+ heap_block_p += tmp_size;
+
+ /* Source selection */
+ if(H5S_SELECT_DESERIALIZE(f, &mesg->storage.u.virt.list[i].source_select, &heap_block_p) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "can't decode source space selection")
+
+ /* Virtual selection */
+ if(H5S_SELECT_DESERIALIZE(f, &mesg->storage.u.virt.list[i].source_dset.virtual_select, &heap_block_p) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "can't decode virtual space selection")
+
+ /* Parse source file and dataset names for "printf"
+ * style format specifiers */
+ if(H5D_virtual_parse_source_name(mesg->storage.u.virt.list[i].source_file_name, &mesg->storage.u.virt.list[i].parsed_source_file_name, &mesg->storage.u.virt.list[i].psfn_static_strlen, &mesg->storage.u.virt.list[i].psfn_nsubs) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "can't parse source file name")
+ if(H5D_virtual_parse_source_name(mesg->storage.u.virt.list[i].source_dset_name, &mesg->storage.u.virt.list[i].parsed_source_dset_name, &mesg->storage.u.virt.list[i].psdn_static_strlen, &mesg->storage.u.virt.list[i].psdn_nsubs) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "can't parse source dataset name")
+
+ /* Set source names in source_dset struct */
+ if((mesg->storage.u.virt.list[i].psfn_nsubs == 0)
+ && (mesg->storage.u.virt.list[i].psdn_nsubs == 0)) {
+ if(mesg->storage.u.virt.list[i].parsed_source_file_name)
+ mesg->storage.u.virt.list[i].source_dset.file_name = mesg->storage.u.virt.list[i].parsed_source_file_name->name_segment;
+ else
+ mesg->storage.u.virt.list[i].source_dset.file_name = mesg->storage.u.virt.list[i].source_file_name;
+ if(mesg->storage.u.virt.list[i].parsed_source_dset_name)
+ mesg->storage.u.virt.list[i].source_dset.dset_name = mesg->storage.u.virt.list[i].parsed_source_dset_name->name_segment;
+ else
+ mesg->storage.u.virt.list[i].source_dset.dset_name = mesg->storage.u.virt.list[i].source_dset_name;
+ } /* end if */
+
+ /* unlim_dim fields */
+ mesg->storage.u.virt.list[i].unlim_dim_source = H5S_get_select_unlim_dim(mesg->storage.u.virt.list[i].source_select);
+ mesg->storage.u.virt.list[i].unlim_dim_virtual = H5S_get_select_unlim_dim(mesg->storage.u.virt.list[i].source_dset.virtual_select);
+ mesg->storage.u.virt.list[i].unlim_extent_source = HSIZE_UNDEF;
+ mesg->storage.u.virt.list[i].unlim_extent_virtual = HSIZE_UNDEF;
+ mesg->storage.u.virt.list[i].clip_size_source = HSIZE_UNDEF;
+ mesg->storage.u.virt.list[i].clip_size_virtual = HSIZE_UNDEF;
+
+ /* Clipped selections */
+ if(mesg->storage.u.virt.list[i].unlim_dim_virtual < 0) {
+ mesg->storage.u.virt.list[i].source_dset.clipped_source_select = mesg->storage.u.virt.list[i].source_select;
+ mesg->storage.u.virt.list[i].source_dset.clipped_virtual_select = mesg->storage.u.virt.list[i].source_dset.virtual_select;
+ } /* end if */
+
+ /* Check mapping for validity (do both pre and post
+ * checks here, since we had to allocate the entry list
+ * before decoding the selections anyways) */
+ if(H5D_virtual_check_mapping_pre(mesg->storage.u.virt.list[i].source_dset.virtual_select, mesg->storage.u.virt.list[i].source_select, H5O_VIRTUAL_STATUS_INVALID) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, NULL, "invalid mapping selections")
+ if(H5D_virtual_check_mapping_post(&mesg->storage.u.virt.list[i]) < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "invalid mapping entry")
+
+ /* Update min_dims */
+ if(H5D_virtual_update_min_dims(mesg, i) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to update virtual dataset minimum dimensions")
+ } /* end for */
+
+ /* Read stored checksum */
+ UINT32DECODE(heap_block_p, stored_chksum)
+
+ /* Compute checksum */
+ computed_chksum = H5_checksum_metadata(heap_block, block_size - (size_t)4, 0);
+
+ /* Verify checksum */
+ if(stored_chksum != computed_chksum)
+ HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, NULL, "incorrect metadata checksum for global heap block")
+
+ /* Verify that the heap block size is correct */
+ if((size_t)(heap_block_p - heap_block) != block_size)
+ HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, NULL, "incorrect heap block size")
+ } /* end if */
+
+ /* Set the layout operations */
+ mesg->ops = H5D_LOPS_VIRTUAL;
+
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -253,8 +385,14 @@ H5O_layout_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *
done:
if(ret_value == NULL)
- if(mesg)
+ if(mesg) {
+ if(mesg->type == H5D_VIRTUAL)
+ if(H5D__virtual_reset_layout(mesg) < 0)
+ HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, NULL, "unable to reset virtual layout")
mesg = H5FL_FREE(H5O_layout_t, mesg);
+ } /* end if */
+
+ heap_block = (uint8_t *)H5MM_xfree(heap_block);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_layout_decode() */
@@ -294,6 +432,8 @@ static herr_t
H5O_layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, const void *_mesg)
{
const H5O_layout_t *mesg = (const H5O_layout_t *) _mesg;
+ uint8_t *heap_block = NULL;
+ size_t *str_size = NULL;
unsigned u;
herr_t ret_value = SUCCEED; /* Return value */
@@ -344,6 +484,106 @@ H5O_layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, c
UINT32ENCODE(p, mesg->u.chunk.dim[u]);
break;
+ case H5D_VIRTUAL:
+ /* Create heap block if it has not been created yet */
+ /* Note that we assume here that the contents of the heap block
+ * cannot change! If this ever stops being the case we must change
+ * this code to allow overwrites of the heap block. -NAF */
+ if((mesg->storage.u.virt.serial_list_hobjid.addr == HADDR_UNDEF)
+ && (mesg->storage.u.virt.list_nused > 0)) {
+ uint8_t *heap_block_p;
+ size_t block_size;
+ hssize_t select_serial_size;
+ hsize_t tmp_hsize;
+ uint32_t chksum;
+ size_t i;
+
+ /* Allocate array for caching results of strlen */
+ if(NULL == (str_size = (size_t *)H5MM_malloc(2 * mesg->storage.u.virt.list_nused *sizeof(size_t))))
+ HGOTO_ERROR(H5E_OHDR, H5E_RESOURCE, FAIL, "unable to allocate string length array")
+
+ /*
+ * Calculate heap block size
+ */
+ /* Number of entries */
+ block_size = H5F_SIZEOF_SIZE(f);
+
+ /* Calculate size of each entry */
+ for(i = 0; i < mesg->storage.u.virt.list_nused; i++) {
+ HDassert(mesg->storage.u.virt.list[i].source_file_name);
+ HDassert(mesg->storage.u.virt.list[i].source_dset_name);
+ HDassert(mesg->storage.u.virt.list[i].source_select);
+ HDassert(mesg->storage.u.virt.list[i].source_dset.virtual_select);
+
+ /* Source file name */
+ str_size[2 * i] = HDstrlen(mesg->storage.u.virt.list[i].source_file_name) + (size_t)1;
+ block_size += str_size[2 * i];
+
+ /* Source dset name */
+ str_size[(2 * i) + 1] = HDstrlen(mesg->storage.u.virt.list[i].source_dset_name) + (size_t)1;
+ block_size += str_size[(2 * i) + 1];
+
+ /* Source selection */
+ if((select_serial_size = H5S_SELECT_SERIAL_SIZE(f, mesg->storage.u.virt.list[i].source_select)) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "unable to check dataspace selection size")
+ block_size += (size_t)select_serial_size;
+
+ /* Virtual dataset selection */
+ if((select_serial_size = H5S_SELECT_SERIAL_SIZE(f, mesg->storage.u.virt.list[i].source_dset.virtual_select)) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "unable to check dataspace selection size")
+ block_size += (size_t)select_serial_size;
+ } /* end for */
+
+ /* Checksum */
+ block_size += 4;
+
+ /* Allocate heap block */
+ if(NULL == (heap_block = (uint8_t *)H5MM_malloc(block_size)))
+ HGOTO_ERROR(H5E_OHDR, H5E_RESOURCE, FAIL, "unable to allocate heap block")
+
+ /*
+ * Encode heap block
+ */
+ heap_block_p = heap_block;
+
+ /* Number of entries */
+ tmp_hsize = (hsize_t)mesg->storage.u.virt.list_nused;
+ H5F_ENCODE_LENGTH(f, heap_block_p, tmp_hsize)
+
+ /* Encode each entry */
+ for(i = 0; i < mesg->storage.u.virt.list_nused; i++) {
+ /* Source file name */
+ (void)HDmemcpy((char *)heap_block_p, mesg->storage.u.virt.list[i].source_file_name, str_size[2 * i]);
+ heap_block_p += str_size[2 * i];
+
+ /* Source dataset name */
+ (void)HDmemcpy((char *)heap_block_p, mesg->storage.u.virt.list[i].source_dset_name, str_size[(2 * i) + 1]);
+ heap_block_p += str_size[(2 * i) + 1];
+
+ /* Source selection */
+ if(H5S_SELECT_SERIALIZE(f, mesg->storage.u.virt.list[i].source_select, &heap_block_p) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to serialize source selection")
+
+ /* Virtual selection */
+ if(H5S_SELECT_SERIALIZE(f, mesg->storage.u.virt.list[i].source_dset.virtual_select, &heap_block_p) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to serialize virtual selection")
+ } /* end for */
+
+ /* Checksum */
+ chksum = H5_checksum_metadata(heap_block, block_size - (size_t)4, 0);
+ UINT32ENCODE(heap_block_p, chksum)
+
+ /* Insert block into global heap */
+ if(H5HG_insert(f, H5AC_ind_dxpl_id, block_size, heap_block, &((H5O_layout_t *)mesg)->storage.u.virt.serial_list_hobjid) < 0) /* Casting away const OK --NAF */
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, FAIL, "unable to insert virtual dataset heap block")
+ } /* end if */
+
+ /* Heap information */
+ H5F_addr_encode(f, &p, mesg->storage.u.virt.serial_list_hobjid.addr);
+ UINT32ENCODE(p, mesg->storage.u.virt.serial_list_hobjid.idx);
+
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -351,6 +591,9 @@ H5O_layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, c
} /* end switch */
done:
+ heap_block = (uint8_t *)H5MM_xfree(heap_block);
+ str_size = (size_t *)H5MM_xfree(str_size);
+
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_layout_encode() */
@@ -403,6 +646,11 @@ H5O_layout_copy(const void *_mesg, void *_dest)
if(dest->type == H5D_CHUNKED && dest->storage.u.chunk.ops)
H5D_chunk_idx_reset(&dest->storage.u.chunk, FALSE);
+ /* Deep copy the entry list for virtual datasets */
+ if(mesg->type == H5D_VIRTUAL)
+ if(H5D__virtual_copy_layout(dest) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, NULL, "unable to copy virtual layout")
+
/* Set return value */
ret_value = dest;
@@ -468,19 +716,25 @@ static herr_t
H5O_layout_reset(void *_mesg)
{
H5O_layout_t *mesg = (H5O_layout_t *)_mesg;
+ herr_t ret_value = SUCCEED; /* Return value */
- FUNC_ENTER_NOAPI_NOINIT_NOERR
+ FUNC_ENTER_NOAPI_NOINIT
if(mesg) {
/* Free the compact storage buffer */
if(H5D_COMPACT == mesg->type)
mesg->storage.u.compact.buf = H5MM_xfree(mesg->storage.u.compact.buf);
+ else if(H5D_VIRTUAL == mesg->type)
+ /* Free the virtual entry list */
+ if(H5D__virtual_reset_layout(mesg) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to reset virtual layout")
/* Reset the message */
mesg->type = H5D_CONTIGUOUS;
} /* end if */
- FUNC_LEAVE_NOAPI(SUCCEED)
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_layout_reset() */
@@ -560,6 +814,12 @@ H5O_layout_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, void *_mesg)
HGOTO_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to free raw data")
break;
+ case H5D_VIRTUAL: /* Virtual dataset */
+ /* Free the file space virtual dataset */
+ if(H5D__virtual_delete(f, dxpl_id, &mesg->storage) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to free raw data")
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -647,6 +907,13 @@ H5O_layout_copy_file(H5F_t *file_src, void *mesg_src, H5F_t *file_dst,
} /* end if */
break;
+ case H5D_VIRTUAL:
+ /* Copy virtual layout. Always copy so the memory fields get copied
+ * properly. */
+ if(H5D__virtual_copy(file_dst, layout_dst, dxpl_id) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, NULL, "unable to copy virtual storage")
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -686,7 +953,7 @@ H5O_layout_debug(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, const vo
FILE * stream, int indent, int fwidth)
{
const H5O_layout_t *mesg = (const H5O_layout_t *) _mesg;
- unsigned u;
+ size_t u;
FUNC_ENTER_NOAPI_NOINIT_NOERR
@@ -709,7 +976,7 @@ H5O_layout_debug(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, const vo
"Number of dimensions:",
(unsigned long)(mesg->u.chunk.ndims));
HDfprintf(stream, "%*s%-*s {", indent, "", fwidth, "Size:");
- for(u = 0; u < mesg->u.chunk.ndims; u++)
+ for(u = 0; u < (size_t)mesg->u.chunk.ndims; u++)
HDfprintf(stream, "%s%lu", u ? ", " : "", (unsigned long)(mesg->u.chunk.dim[u]));
HDfprintf(stream, "}\n");
@@ -746,6 +1013,26 @@ H5O_layout_debug(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, const vo
"Data Size:", mesg->storage.u.compact.size);
break;
+ case H5D_VIRTUAL:
+ HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
+ "Type:", "Virtual");
+ HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth,
+ "Global heap address:", mesg->storage.u.virt.serial_list_hobjid.addr);
+ HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth,
+ "Global heap index:", mesg->storage.u.virt.serial_list_hobjid.idx);
+ for(u = 0; u < mesg->storage.u.virt.list_nused; u++) {
+ HDfprintf(stream, "%*sMapping %u:\n", indent, "", u);
+ HDfprintf(stream, "%*s%-*s %s\n", indent + 3, "", fwidth - 3,
+ "Virtual selection:", "<Not yet implemented>");
+ HDfprintf(stream, "%*s%-*s %s\n", indent + 3, "", fwidth - 3,
+ "Source file name:", mesg->storage.u.virt.list[u].source_file_name);
+ HDfprintf(stream, "%*s%-*s %s\n", indent + 3, "", fwidth - 3,
+ "Source dataset name:", mesg->storage.u.virt.list[u].source_dset_name);
+ HDfprintf(stream, "%*s%-*s %s\n", indent + 3, "", fwidth - 3,
+ "Source selection:", "<Not yet implemented>");
+ } /* end for */
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
diff --git a/src/H5Oprivate.h b/src/H5Oprivate.h
index dbe74f7..77a11cd 100644
--- a/src/H5Oprivate.h
+++ b/src/H5Oprivate.h
@@ -38,6 +38,7 @@
#include "H5private.h" /* Generic Functions */
#include "H5ACprivate.h" /* Metadata cache */
#include "H5Fprivate.h" /* File access */
+#include "H5HGprivate.h" /* Global Heaps */
#include "H5SLprivate.h" /* Skip lists */
#include "H5Tprivate.h" /* Datatype functions */
#include "H5Zprivate.h" /* I/O pipeline filters */
@@ -376,7 +377,8 @@ typedef struct H5O_efl_t {
* for larger chunk dimensions, stores chunk indices into their own
* message (the "layout index" message), adds features for compact/dense
* storage of elements and/or chunk records, adds features for abbreviating
- * the storage used for partial chunks on boundaries, etc.
+ * the storage used for partial chunks on boundaries, adds the virtual
+ * layout type, etc.
*/
#define H5O_LAYOUT_VERSION_4 4
@@ -414,12 +416,88 @@ typedef struct H5O_storage_compact_t {
void *buf; /* Buffer for compact dataset */
} H5O_storage_compact_t;
+typedef struct H5O_storage_virtual_srcdset_t {
+ /* Stored */
+ struct H5S_t *virtual_select; /* Selection in the virtual dataset that is mapped to source selection */
+
+ /* Not stored */
+ char *file_name; /* Source file name used for virtual dataset mapping */
+ char *dset_name; /* Source dataset name used for virtual dataset mapping */
+ struct H5S_t *clipped_source_select; /* Clipped version of source_select */
+ struct H5S_t *clipped_virtual_select; /* Clipped version of virtual_select */
+ struct H5D_t *dset; /* Source dataset */
+ hbool_t dset_exists; /* Whether the dataset exists (was opened successfully) */
+
+ /* Temporary - only used during I/O operation, NULL at all other times */
+ struct H5S_t *projected_mem_space; /* Selection within mem_space for this mapping */
+} H5O_storage_virtual_srcdset_t;
+
+typedef struct H5O_storage_virtual_name_seg_t {
+ char *name_segment; /* String for this name segment */
+ struct H5O_storage_virtual_name_seg_t *next; /* Next name segment */
+} H5O_storage_virtual_name_seg_t;
+
+typedef enum H5O_virtual_space_status_t {
+ H5O_VIRTUAL_STATUS_INVALID = 0, /* Space extent is invalid */
+ H5O_VIRTUAL_STATUS_SEL_BOUNDS, /* Space extent set to bounds of selection */
+ H5O_VIRTUAL_STATUS_USER, /* Space extent provided by application */
+ H5O_VIRTUAL_STATUS_CORRECT /* Space extent matches dataset */
+} H5O_virtual_space_status_t;
+
+typedef struct H5O_storage_virtual_ent_t {
+ /* Stored */
+ H5O_storage_virtual_srcdset_t source_dset; /* Information about the source dataset */
+ char *source_file_name; /* Original (unparsed) source file name */
+ char *source_dset_name; /* Original (unparsed) source dataset name */
+ struct H5S_t *source_select; /* Selection in the source dataset for mapping */
+
+ /* Not stored */
+ H5O_storage_virtual_srcdset_t *sub_dset; /* Array of sub-source dataset info structs */
+ size_t sub_dset_nalloc; /* Number of slots allocated in sub_dset */
+ size_t sub_dset_nused; /* Number of slots "used" in sub_dset - essentially the farthest sub dataset in the extent */
+ size_t sub_dset_io_start; /* First element in sub_dset involved in current I/O op. Field has no meaning and may be uninitialized at all other times */
+ size_t sub_dset_io_end; /* First element in sub_dset outside of current I/O op. Field has no meaning and may be uninitialized at all other times */
+ H5O_storage_virtual_name_seg_t *parsed_source_file_name; /* Parsed version of source_dset.file_name */
+ size_t psfn_static_strlen; /* Length of parsed_source_file_name without block number substitutions */
+ size_t psfn_nsubs; /* Number of block number substitutions in parsed_source_file_name */
+ H5O_storage_virtual_name_seg_t *parsed_source_dset_name; /* Parsed version of source_dset.dset_name */
+ size_t psdn_static_strlen; /* Length of parsed_source_dset_name without block number substitutions */
+ size_t psdn_nsubs; /* Number of block number substitutions in parsed_source_dset_name */
+ int unlim_dim_source; /* Unlimited dimension in source_select */
+ int unlim_dim_virtual; /* Unlimited dimension in virtual_select */
+ hsize_t unlim_extent_source; /* Extent of unlimited dimension in source dset last time virtual_select was patched to match selection */
+ hsize_t unlim_extent_virtual; /* Extent of unlimited dimension in virtual dset last time source_select was patched to match selection */
+ hsize_t clip_size_virtual; /* Size selection would be clipped to in virtual selection, ignoring other mappings, when source extent == unlim_extent_source */
+ hsize_t clip_size_source; /* Size selection would be clipped to in source selection when virtual extent == unlim_extent_virtual */
+ H5O_virtual_space_status_t source_space_status; /* Extent patching status of source_select */
+ H5O_virtual_space_status_t virtual_space_status; /* Extent patching status of virtual_select */
+} H5O_storage_virtual_ent_t;
+
+typedef struct H5O_storage_virtual_t {
+ /* Stored in message */
+ H5HG_t serial_list_hobjid; /* Global heap ID for the list of virtual mapping entries stored on disk */
+
+ /* Stored in heap */
+ size_t list_nused; /* Number of array elements used in list */
+ H5O_storage_virtual_ent_t *list; /* Array of virtual dataset mapping entries */
+
+ /* Not stored */
+ size_t list_nalloc; /* Number of slots allocated */
+ hsize_t min_dims[H5S_MAX_RANK]; /* Minimum extent of VDS (maximum of all non-unlimited selection bounds) */
+ H5D_vds_view_t view; /* Method for calculating the extent of the virtual dataset with unlimited selections */
+ hsize_t printf_gap; /* Maximum number of sequential missing source datasets before terminating the search for more */
+ hid_t source_fapl; /* FAPL to use to open source files */
+ hid_t source_dapl; /* DAPL to use to open source datasets */
+ hbool_t init; /* Whether all information has been completely initialized */
+} H5O_storage_virtual_t;
+
typedef struct H5O_storage_t {
H5D_layout_t type; /* Type of layout */
union {
H5O_storage_contig_t contig; /* Information for contiguous storage */
H5O_storage_chunk_t chunk; /* Information for chunked storage */
H5O_storage_compact_t compact; /* Information for compact storage */
+ H5O_storage_virtual_t virt; /* Information for virtual storage */
} u;
} H5O_storage_t;
diff --git a/src/H5Osdspace.c b/src/H5Osdspace.c
index 8d357c2..50fba0b 100644
--- a/src/H5Osdspace.c
+++ b/src/H5Osdspace.c
@@ -312,7 +312,7 @@ H5O_sdspace_copy(const void *_mesg, void *_dest)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
/* Copy extent information */
- if(H5S_extent_copy(dest, mesg, TRUE) < 0)
+ if(H5S_extent_copy_real(dest, mesg, TRUE) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, NULL, "can't copy extent")
/* Set return value */
@@ -467,7 +467,7 @@ H5O_sdspace_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void *mesg_src,
HGOTO_ERROR(H5E_DATASPACE, H5E_NOSPACE, FAIL, "dataspace extent allocation failed")
/* Create a copy of the dataspace extent */
- if(H5S_extent_copy(udata->src_space_extent, src_space_extent, TRUE) < 0)
+ if(H5S_extent_copy_real(udata->src_space_extent, src_space_extent, TRUE) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "can't copy extent")
} /* end if */
diff --git a/src/H5Pdapl.c b/src/H5Pdapl.c
index 93d16bb..94ae0b4 100644
--- a/src/H5Pdapl.c
+++ b/src/H5Pdapl.c
@@ -61,6 +61,16 @@
#define H5D_ACS_PREEMPT_READ_CHUNKS_DEF H5D_CHUNK_CACHE_W0_DEFAULT
#define H5D_ACS_PREEMPT_READ_CHUNKS_ENC H5P__encode_double
#define H5D_ACS_PREEMPT_READ_CHUNKS_DEC H5P__decode_double
+/* Definitions for VDS view option */
+#define H5D_ACS_VDS_VIEW_SIZE sizeof(H5D_vds_view_t)
+#define H5D_ACS_VDS_VIEW_DEF H5D_VDS_LAST_AVAILABLE
+#define H5D_ACS_VDS_VIEW_ENC H5P__dacc_vds_view_enc
+#define H5D_ACS_VDS_VIEW_DEC H5P__dacc_vds_view_dec
+/* Definitions for VDS printf gap */
+#define H5D_ACS_VDS_PRINTF_GAP_SIZE sizeof(hsize_t)
+#define H5D_ACS_VDS_PRINTF_GAP_DEF (hsize_t)0
+#define H5D_ACS_VDS_PRINTF_GAP_ENC H5P__encode_hsize_t
+#define H5D_ACS_VDS_PRINTF_GAP_DEC H5P__decode_hsize_t
/******************/
/* Local Typedefs */
@@ -79,6 +89,10 @@
/* Property class callbacks */
static herr_t H5P__dacc_reg_prop(H5P_genclass_t *pclass);
+/* Property list callbacks */
+static herr_t H5P__dacc_vds_view_enc(const void *value, void **pp, size_t *size);
+static herr_t H5P__dacc_vds_view_dec(const void **pp, void *value);
+
/*********************/
/* Package Variables */
@@ -133,6 +147,8 @@ H5P__dacc_reg_prop(H5P_genclass_t *pclass)
size_t rdcc_nslots = H5D_ACS_DATA_CACHE_NUM_SLOTS_DEF; /* Default raw data chunk cache # of slots */
size_t rdcc_nbytes = H5D_ACS_DATA_CACHE_BYTE_SIZE_DEF; /* Default raw data chunk cache # of bytes */
double rdcc_w0 = H5D_ACS_PREEMPT_READ_CHUNKS_DEF; /* Default raw data chunk cache dirty ratio */
+ H5D_vds_view_t virtual_view = H5D_ACS_VDS_VIEW_DEF; /* Default VDS view option */
+ hsize_t printf_gap = H5D_ACS_VDS_PRINTF_GAP_DEF; /* Default VDS printf gap */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
@@ -152,6 +168,18 @@ H5P__dacc_reg_prop(H5P_genclass_t *pclass)
NULL, NULL, NULL, H5D_ACS_PREEMPT_READ_CHUNKS_ENC, H5D_ACS_PREEMPT_READ_CHUNKS_DEC, NULL, NULL, NULL, NULL) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class")
+ /* Register the VDS view option */
+ if(H5P_register_real(pclass, H5D_ACS_VDS_VIEW_NAME, H5D_ACS_VDS_VIEW_SIZE, &virtual_view,
+ NULL, NULL, NULL, H5D_ACS_VDS_VIEW_ENC, H5D_ACS_VDS_VIEW_DEC,
+ NULL, NULL, NULL, NULL) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class")
+
+ /* Register the VDS printf gap */
+ if(H5P_register_real(pclass, H5D_ACS_VDS_PRINTF_GAP_NAME, H5D_ACS_VDS_PRINTF_GAP_SIZE, &printf_gap,
+ NULL, NULL, NULL, H5D_ACS_VDS_PRINTF_GAP_ENC, H5D_ACS_VDS_PRINTF_GAP_DEC,
+ NULL, NULL, NULL, NULL) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class")
+
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5P__dacc_reg_prop() */
@@ -282,5 +310,255 @@ H5Pget_chunk_cache(hid_t dapl_id, size_t *rdcc_nslots, size_t *rdcc_nbytes, doub
done:
FUNC_LEAVE_API(ret_value)
-}
+} /* end H5Pget_chunk_cache() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5Pset_virtual_view
+ *
+ * Purpose: Takes the access property list for the virtual dataset,
+ * dapl_id, and the flag, view, and sets the VDS view
+ * according to the flag value. The view will include all
+ * data before the first missing mapped data found if the
+ * flag is set to H5D_VDS_FIRST_MISSING or to include all
+ * available mapped data if the flag is set to
+ * H5D_VDS_LAST_AVAIALBLE. Missing mapped data will be
+ * filled with the fill value according to the VDS creation
+ * property settings. For VDS with unlimited mappings, the
+ * view defines the extent.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * May 4, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Pset_virtual_view(hid_t plist_id, H5D_vds_view_t view)
+{
+ H5P_genplist_t *plist; /* Property list pointer */
+ herr_t ret_value = SUCCEED; /* return value */
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE2("e", "iDv", plist_id, view);
+
+ /* Check argument */
+ if((view != H5D_VDS_FIRST_MISSING) && (view != H5D_VDS_LAST_AVAILABLE))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid bounds option")
+
+ /* Get the plist structure */
+ if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_ACCESS)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
+
+ /* Update property list */
+ if(H5P_set(plist, H5D_ACS_VDS_VIEW_NAME, &view) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value")
+
+done:
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pset_virtual_view() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5Pget_virtual_view
+ *
+ * Purpose: Takes the access property list for the virtual dataset,
+ * dapl_id, and gets the flag, view, set by the
+ * H5Pset_virtual_view call. The possible values of view are
+ * H5D_VDS_FIRST_MISSING or H5D_VDS_LAST_AVAIALBLE.
+ *
+ * Return: Success: H5D_VDS_FIRST_MISSING or
+ * H5D_VDS_LAST_AVAILABLE
+ * Failure: H5D_VDS_ERROR
+ *
+ * Programmer: Neil Fortner
+ * May 4, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Pget_virtual_view(hid_t plist_id, H5D_vds_view_t *view)
+{
+ H5P_genplist_t *plist; /* Property list pointer */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE2("e", "i*Dv", plist_id, view);
+
+ /* Get the plist structure */
+ if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_ACCESS)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, H5D_VDS_ERROR, "can't find object for ID")
+
+ /* Get value from property list */
+ if(view)
+ if(H5P_get(plist, H5D_ACS_VDS_VIEW_NAME, view) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, H5D_VDS_ERROR, "unable to get value")
+
+done:
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pget_virtual_view() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5P__dacc_vds_view_enc
+ *
+ * Purpose: Callback routine which is called whenever the vds view
+ * property in the dataset access property list is encoded.
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Neil Fortner
+ * Tuesday, May 5, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5P__dacc_vds_view_enc(const void *value, void **_pp, size_t *size)
+{
+ const H5D_vds_view_t *view = (const H5D_vds_view_t *)value; /* Create local alias for values */
+ uint8_t **pp = (uint8_t **)_pp;
+
+ FUNC_ENTER_STATIC_NOERR
+
+ /* Sanity check */
+ HDassert(view);
+ HDassert(size);
+
+ if(NULL != *pp)
+ /* Encode EDC property */
+ *(*pp)++ = (uint8_t)*view;
+
+ /* Size of EDC property */
+ (*size)++;
+
+ FUNC_LEAVE_NOAPI(SUCCEED)
+} /* end H5P__dacc_vds_view_enc() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5P__dacc_vds_view_dec
+ *
+ * Purpose: Callback routine which is called whenever the vds view
+ * property in the dataset access property list is encoded.
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Neil Fortner
+ * Tuesday, May 5, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5P__dacc_vds_view_dec(const void **_pp, void *_value)
+{
+ H5D_vds_view_t *view = (H5D_vds_view_t *)_value;
+ const uint8_t **pp = (const uint8_t **)_pp;
+
+ FUNC_ENTER_STATIC_NOERR
+
+ /* Sanity checks */
+ HDassert(pp);
+ HDassert(*pp);
+ HDassert(view);
+
+ /* Decode EDC property */
+ *view = (H5D_vds_view_t)*(*pp)++;
+
+ FUNC_LEAVE_NOAPI(SUCCEED)
+} /* end H5P__dacc_vds_view_dec() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5Pset_virtual_printf_gap
+ *
+ * Purpose: Sets the access property list for the virtual dataset,
+ * dapl_id, to instruct the library to stop looking for the
+ * mapped data stored in the files and/or datasets with the
+ * printf-style names after not finding gap_size files and/or
+ * datasets. The found source files and datasets will
+ * determine the extent of the unlimited VDS with the printf
+ * -style mappings.
+ *
+ * For example, if regularly spaced blocks of VDS are mapped
+ * to datasets with the names d-1, d-2, d-3, ..., d-N, ...,
+ * and d-2 dataset is missing and gap_size is set to 0, then
+ * VDS will contain only data found in d-1. If d-2 and d-3
+ * are missing and gap_size is set to 2, then VDS will
+ * contain the data from d-1, d-3, ..., d-N, .... The blocks
+ * that are mapped to d-2 and d-3 will be filled according to
+ * the VDS fill value setting.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * May 21, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Pset_virtual_printf_gap(hid_t plist_id, hsize_t gap_size)
+{
+ H5P_genplist_t *plist; /* Property list pointer */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE2("e", "ih", plist_id, gap_size);
+
+ /* Check argument */
+ if(gap_size == HSIZE_UNDEF)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid printf gap size")
+
+ /* Get the plist structure */
+ if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_ACCESS)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
+
+ /* Update property list */
+ if(H5P_set(plist, H5D_ACS_VDS_PRINTF_GAP_NAME, &gap_size) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value")
+
+done:
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pset_virtual_printf_gap() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5Pget_virtual_printf_gap
+ *
+ * Purpose: Gets the maximum number of missing printf-style files
+ * and/or datasets for determining the extent of the
+ * unlimited VDS, gap_size, using the access property list
+ * for the virtual dataset, dapl_id. The default library
+ * value for gap_size is 0.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * May 21, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Pget_virtual_printf_gap(hid_t plist_id, hsize_t *gap_size)
+{
+ H5P_genplist_t *plist; /* Property list pointer */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE2("e", "i*h", plist_id, gap_size);
+
+ /* Get the plist structure */
+ if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_ACCESS)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, H5D_VDS_ERROR, "can't find object for ID")
+
+ /* Get value from property list */
+ if(gap_size)
+ if(H5P_get(plist, H5D_ACS_VDS_PRINTF_GAP_NAME, gap_size) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, H5D_VDS_ERROR, "unable to get value")
+
+done:
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pget_virtual_printf_gap() */
diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c
index 9bf58e4..16577e7 100644
--- a/src/H5Pdcpl.c
+++ b/src/H5Pdcpl.c
@@ -41,7 +41,9 @@
#include "H5FLprivate.h" /* Free Lists */
#include "H5Iprivate.h" /* IDs */
#include "H5MMprivate.h" /* Memory management */
+#include "H5Oprivate.h" /* Object headers */
#include "H5Ppkg.h" /* Property lists */
+#include "H5Sprivate.h" /* Dataspaces */
#include "H5Tprivate.h" /* Datatypes */
#include "H5Zpkg.h" /* Data filters */
@@ -55,13 +57,16 @@
#define H5D_DEF_STORAGE_CONTIG_INIT {HADDR_UNDEF, (hsize_t)0}
#define H5D_DEF_STORAGE_CHUNK_INIT {H5D_CHUNK_IDX_BTREE, HADDR_UNDEF, NULL, {{HADDR_UNDEF, NULL}}}
#define H5D_DEF_LAYOUT_CHUNK_INIT {(unsigned)0, {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0}, (uint32_t)0, (hsize_t)0, {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0}, {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0}}
+#define H5D_DEF_STORAGE_VIRTUAL_INIT {{HADDR_UNDEF, 0}, 0, NULL, 0, {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0}, H5D_VDS_ERROR, HSIZE_UNDEF, -1, -1, FALSE}
#ifdef H5_HAVE_C99_DESIGNATED_INITIALIZER
#define H5D_DEF_STORAGE_COMPACT {H5D_COMPACT, { .compact = H5D_DEF_STORAGE_COMPACT_INIT }}
#define H5D_DEF_STORAGE_CONTIG {H5D_CONTIGUOUS, { .contig = H5D_DEF_STORAGE_CONTIG_INIT }}
#define H5D_DEF_STORAGE_CHUNK {H5D_CHUNKED, { .chunk = H5D_DEF_STORAGE_CHUNK_INIT }}
+#define H5D_DEF_STORAGE_VIRTUAL {H5D_VIRTUAL, { .virt = H5D_DEF_STORAGE_VIRTUAL_INIT }}
#define H5D_DEF_LAYOUT_COMPACT {H5D_COMPACT, H5O_LAYOUT_VERSION_3, NULL, {H5D_DEF_LAYOUT_CHUNK_INIT}, H5D_DEF_STORAGE_COMPACT}
#define H5D_DEF_LAYOUT_CONTIG {H5D_CONTIGUOUS, H5O_LAYOUT_VERSION_3, NULL, {H5D_DEF_LAYOUT_CHUNK_INIT}, H5D_DEF_STORAGE_CONTIG}
#define H5D_DEF_LAYOUT_CHUNK {H5D_CHUNKED, H5O_LAYOUT_VERSION_3, NULL, {H5D_DEF_LAYOUT_CHUNK_INIT}, H5D_DEF_STORAGE_CHUNK}
+#define H5D_DEF_LAYOUT_VIRTUAL {H5D_VIRTUAL, H5O_LAYOUT_VERSION_3, NULL, {H5D_DEF_LAYOUT_CHUNK_INIT}, H5D_DEF_STORAGE_VIRTUAL}
#else /* H5_HAVE_C99_DESIGNATED_INITIALIZER */
/* Note that the compact & chunked layout initialization values are using the
* contiguous layout initialization in the union, because the contiguous
@@ -71,6 +76,7 @@
#define H5D_DEF_LAYOUT_COMPACT {H5D_COMPACT, H5O_LAYOUT_VERSION_3, NULL, {H5D_DEF_LAYOUT_CHUNK_INIT}, {H5D_CONTIGUOUS, H5D_DEF_STORAGE_CONTIG_INIT}}
#define H5D_DEF_LAYOUT_CONTIG {H5D_CONTIGUOUS, H5O_LAYOUT_VERSION_3, NULL, {H5D_DEF_LAYOUT_CHUNK_INIT}, {H5D_CONTIGUOUS, H5D_DEF_STORAGE_CONTIG_INIT}}
#define H5D_DEF_LAYOUT_CHUNK {H5D_CHUNKED, H5O_LAYOUT_VERSION_3, NULL, {H5D_DEF_LAYOUT_CHUNK_INIT}, {H5D_CONTIGUOUS, H5D_DEF_STORAGE_CONTIG_INIT}}
+#define H5D_DEF_LAYOUT_VIRTUAL {H5D_VIRTUAL, H5O_LAYOUT_VERSION_3, NULL, {H5D_DEF_LAYOUT_CHUNK_INIT}, {H5D_CONTIGUOUS, H5D_DEF_STORAGE_CONTIG_INIT}}
#endif /* H5_HAVE_C99_DESIGNATED_INITIALIZER */
/* ======== Dataset creation properties ======== */
@@ -79,7 +85,9 @@
#define H5D_CRT_LAYOUT_DEF H5D_DEF_LAYOUT_CONTIG
#define H5D_CRT_LAYOUT_ENC H5P__dcrt_layout_enc
#define H5D_CRT_LAYOUT_DEC H5P__dcrt_layout_dec
+#define H5D_CRT_LAYOUT_DEL H5P__dcrt_layout_del
#define H5D_CRT_LAYOUT_CMP H5P__dcrt_layout_cmp
+#define H5D_CRT_LAYOUT_CLOSE H5P__dcrt_layout_close
/* Definitions for fill value. size=0 means fill value will be 0 as
* library default; size=-1 means fill value is undefined. */
#define H5D_CRT_FILL_VALUE_SIZE sizeof(H5O_fill_t)
@@ -128,7 +136,9 @@ static herr_t H5P__dcrt_close(hid_t dxpl_id, void *close_data);
/* Property callbacks */
static herr_t H5P__dcrt_layout_enc(const void *value, void **pp, size_t *size);
static herr_t H5P__dcrt_layout_dec(const void **pp, void *value);
+static herr_t H5P__dcrt_layout_del(hid_t prop_id, const char *name, size_t size, void *value);
static int H5P__dcrt_layout_cmp(const void *value1, const void *value2, size_t size);
+static herr_t H5P__dcrt_layout_close(const char *name, size_t size, void *value);
static herr_t H5P__fill_value_enc(const void *value, void **pp, size_t *size);
static herr_t H5P__fill_value_dec(const void **pp, void *value);
static herr_t H5P__dcrt_ext_file_list_enc(const void *value, void **pp, size_t *size);
@@ -183,10 +193,12 @@ static const H5O_efl_t H5D_def_efl_g = H5D_CRT_EXT_FILE_LIST_DEF;
static const H5O_layout_t H5D_def_layout_compact_g = H5D_DEF_LAYOUT_COMPACT;
static const H5O_layout_t H5D_def_layout_contig_g = H5D_DEF_LAYOUT_CONTIG;
static const H5O_layout_t H5D_def_layout_chunk_g = H5D_DEF_LAYOUT_CHUNK;
+static const H5O_layout_t H5D_def_layout_virtual_g = H5D_DEF_LAYOUT_VIRTUAL;
#else /* H5_HAVE_C99_DESIGNATED_INITIALIZER */
static H5O_layout_t H5D_def_layout_compact_g = H5D_DEF_LAYOUT_COMPACT;
static H5O_layout_t H5D_def_layout_contig_g = H5D_DEF_LAYOUT_CONTIG;
static H5O_layout_t H5D_def_layout_chunk_g = H5D_DEF_LAYOUT_CHUNK;
+static H5O_layout_t H5D_def_layout_virtual_g = H5D_DEF_LAYOUT_VIRTUAL;
static hbool_t H5P_dcrt_def_layout_init_g = FALSE;
#endif /* H5_HAVE_C99_DESIGNATED_INITIALIZER */
@@ -213,7 +225,7 @@ H5P__dcrt_reg_prop(H5P_genclass_t *pclass)
/* Register the storage layout property */
if(H5P_register_real(pclass, H5D_CRT_LAYOUT_NAME, H5D_CRT_LAYOUT_SIZE, &H5D_def_layout_g,
NULL, NULL, NULL, H5D_CRT_LAYOUT_ENC, H5D_CRT_LAYOUT_DEC,
- NULL, NULL, H5D_CRT_LAYOUT_CMP, NULL) < 0)
+ H5D_CRT_LAYOUT_DEL, NULL, H5D_CRT_LAYOUT_CMP, H5D_CRT_LAYOUT_CLOSE) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class")
/* Register the fill value property */
@@ -314,6 +326,11 @@ H5P__dcrt_copy(hid_t dst_plist_id, hid_t src_plist_id, void H5_ATTR_UNUSED *copy
dst_layout.storage.u.chunk.ops = NULL;
break;
+ case H5D_VIRTUAL:
+ dst_layout.storage.u.virt.serial_list_hobjid.addr = HADDR_UNDEF;
+ dst_layout.storage.u.virt.serial_list_hobjid.idx = 0;
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -421,8 +438,12 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size)
{
const H5O_layout_t *layout = (const H5O_layout_t *)value; /* Create local aliases for values */
uint8_t **pp = (uint8_t **)_pp;
+ uint8_t *tmp_p;
+ size_t tmp_size;
+ size_t u; /* Local index variable */
+ herr_t ret_value = SUCCEED; /* Return value */
- FUNC_ENTER_STATIC_NOERR
+ FUNC_ENTER_STATIC
/* Sanity check */
HDassert(layout);
@@ -434,16 +455,84 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size)
/* If layout is chunked, encode chunking structure */
if(H5D_CHUNKED == layout->type) {
- unsigned u; /* Local index variable */
-
/* Encode rank */
*(*pp)++ = (uint8_t)layout->u.chunk.ndims;
/* Encode chunk dims */
HDcompile_assert(sizeof(uint32_t) == sizeof(layout->u.chunk.dim[0]));
- for(u = 0; u < layout->u.chunk.ndims; u++)
+ for(u = 0; u < (size_t)layout->u.chunk.ndims; u++)
UINT32ENCODE(*pp, layout->u.chunk.dim[u])
} /* end if */
+ else if(H5D_VIRTUAL == layout->type) {
+ uint64_t nentries = (uint64_t)layout->storage.u.virt.list_nused;
+
+ /* Encode number of entries */
+ UINT64ENCODE(*pp, nentries)
+ *size += (size_t)8;
+
+ /* Iterate over entries */
+ for(u = 0; u < layout->storage.u.virt.list_nused; u++) {
+ /* Source file name */
+ tmp_size = HDstrlen(layout->storage.u.virt.list[u].source_file_name) + (size_t)1;
+ (void)HDmemcpy(*pp, layout->storage.u.virt.list[u].source_file_name, tmp_size);
+ *pp += tmp_size;
+ *size += tmp_size;
+
+ /* Source dataset name */
+ tmp_size = HDstrlen(layout->storage.u.virt.list[u].source_dset_name) + (size_t)1;
+ (void)HDmemcpy(*pp, layout->storage.u.virt.list[u].source_dset_name, tmp_size);
+ *pp += tmp_size;
+ *size += tmp_size;
+
+ /* Source selection. Note that we are not passing the real
+ * allocated size because we do no know it. H5P__encode should
+ * have verified that the buffer is large enough for the entire
+ * list before we get here. */
+ tmp_size = (size_t)-1;
+ tmp_p = *pp;
+ if(H5S_encode(layout->storage.u.virt.list[u].source_select, pp, &tmp_size) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize source selection")
+ *size += (size_t)(*pp - tmp_p);
+
+ /* Virtual dataset selection. Same notes as above apply. */
+ tmp_size = (size_t)-1;
+ tmp_p = *pp;
+ if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, pp, &tmp_size) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize virtual selection")
+ *size += (size_t)(*pp - tmp_p);
+ } /* end for */
+ } /* end if */
+ } /* end if */
+ else if(H5D_VIRTUAL == layout->type) {
+ /* Calculate size of virtual layout info */
+ /* number of entries */
+ *size += (size_t)8;
+
+ /* NULL pointer to pass to H5S_encode */
+ tmp_p = NULL;
+
+ /* Iterate over entries */
+ for(u = 0; u < layout->storage.u.virt.list_nused; u++) {
+ /* Source file name */
+ tmp_size = HDstrlen(layout->storage.u.virt.list[u].source_file_name) + (size_t)1;
+ *size += tmp_size;
+
+ /* Source dataset name */
+ tmp_size = HDstrlen(layout->storage.u.virt.list[u].source_dset_name) + (size_t)1;
+ *size += tmp_size;
+
+ /* Source selection */
+ tmp_size = (size_t)0;
+ if(H5S_encode(layout->storage.u.virt.list[u].source_select, &tmp_p, &tmp_size) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize source selection")
+ *size += tmp_size;
+
+ /* Virtual dataset selection */
+ tmp_size = (size_t)0;
+ if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, &tmp_p, &tmp_size) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize virtual selection")
+ *size += tmp_size;
+ } /* end for */
} /* end if */
/* Size of layout type */
@@ -455,7 +544,8 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size)
*size += layout->u.chunk.ndims * sizeof(uint32_t);
} /* end if */
- FUNC_LEAVE_NOAPI(SUCCEED)
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
} /* end H5P__dcrt_layout_enc() */
@@ -478,7 +568,7 @@ static herr_t
H5P__dcrt_layout_dec(const void **_pp, void *value)
{
const H5O_layout_t *layout; /* Storage layout */
- H5O_layout_t chunk_layout; /* Layout structure for chunk info */
+ H5O_layout_t tmp_layout; /* Temporary local layout structure */
H5D_layout_t type; /* Layout type */
const uint8_t **pp = (const uint8_t **)_pp;
herr_t ret_value = SUCCEED; /* Return value */
@@ -518,19 +608,113 @@ H5P__dcrt_layout_dec(const void **_pp, void *value)
unsigned u; /* Local index variable */
/* Initialize to default values */
- chunk_layout = H5D_def_layout_chunk_g;
+ tmp_layout = H5D_def_layout_chunk_g;
/* Set rank & dimensions */
- chunk_layout.u.chunk.ndims = (unsigned)ndims;
+ tmp_layout.u.chunk.ndims = (unsigned)ndims;
for(u = 0; u < ndims; u++)
- UINT32DECODE(*pp, chunk_layout.u.chunk.dim[u])
+ UINT32DECODE(*pp, tmp_layout.u.chunk.dim[u])
/* Point at the newly set up struct */
- layout = &chunk_layout;
+ layout = &tmp_layout;
} /* end else */
}
break;
+ case H5D_VIRTUAL:
+ {
+ uint64_t nentries; /* Number of VDS mappings */
+
+ /* Decode number of entries */
+ UINT64DECODE(*pp, nentries)
+
+ if(nentries == (uint64_t)0)
+ /* Just use the default struct */
+ layout = &H5D_def_layout_virtual_g;
+ else {
+ size_t tmp_size;
+ size_t u; /* Local index variable */
+
+ /* Initialize to default values */
+ tmp_layout = H5D_def_layout_virtual_g;
+
+ /* Allocate entry list */
+ if(NULL == (tmp_layout.storage.u.virt.list = (H5O_storage_virtual_ent_t *)H5MM_calloc((size_t)nentries * sizeof(H5O_storage_virtual_ent_t))))
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "unable to allocate heap block")
+ tmp_layout.storage.u.virt.list_nalloc = (size_t)nentries;
+ tmp_layout.storage.u.virt.list_nused = (size_t)nentries;
+
+ /* Decode each entry */
+ for(u = 0; u < (size_t)nentries; u++) {
+ /* Source file name */
+ tmp_size = HDstrlen((const char *)*pp) + 1;
+ if(NULL == (tmp_layout.storage.u.virt.list[u].source_file_name = (char *)H5MM_malloc(tmp_size)))
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "unable to allocate memory for source file name")
+ (void)HDmemcpy(tmp_layout.storage.u.virt.list[u].source_file_name, *pp, tmp_size);
+ *pp += tmp_size;
+
+ /* Source dataset name */
+ tmp_size = HDstrlen((const char *)*pp) + 1;
+ if(NULL == (tmp_layout.storage.u.virt.list[u].source_dset_name = (char *)H5MM_malloc(tmp_size)))
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "unable to allocate memory for source dataset name")
+ (void)HDmemcpy(tmp_layout.storage.u.virt.list[u].source_dset_name, *pp, tmp_size);
+ *pp += tmp_size;
+
+ /* Source selection */
+ if(NULL == (tmp_layout.storage.u.virt.list[u].source_select = H5S_decode(pp)))
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTDECODE, FAIL, "can't decode source space selection")
+ tmp_layout.storage.u.virt.list[u].source_space_status = H5O_VIRTUAL_STATUS_USER;
+
+ /* Virtual selection */
+ if(NULL == (tmp_layout.storage.u.virt.list[u].source_dset.virtual_select = H5S_decode(pp)))
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTDECODE, FAIL, "can't decode virtual space selection")
+ tmp_layout.storage.u.virt.list[u].virtual_space_status = H5O_VIRTUAL_STATUS_USER;
+
+ /* Parse source file and dataset names for "printf"
+ * style format specifiers */
+ if(H5D_virtual_parse_source_name(tmp_layout.storage.u.virt.list[u].source_file_name, &tmp_layout.storage.u.virt.list[u].parsed_source_file_name, &tmp_layout.storage.u.virt.list[u].psfn_static_strlen, &tmp_layout.storage.u.virt.list[u].psfn_nsubs) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "can't parse source file name")
+ if(H5D_virtual_parse_source_name(tmp_layout.storage.u.virt.list[u].source_dset_name, &tmp_layout.storage.u.virt.list[u].parsed_source_dset_name, &tmp_layout.storage.u.virt.list[u].psdn_static_strlen, &tmp_layout.storage.u.virt.list[u].psdn_nsubs) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "can't parse source dataset name")
+
+ /* Set source names in source_dset struct */
+ if((tmp_layout.storage.u.virt.list[u].psfn_nsubs == 0)
+ && (tmp_layout.storage.u.virt.list[u].psdn_nsubs == 0)) {
+ if(tmp_layout.storage.u.virt.list[u].parsed_source_file_name)
+ tmp_layout.storage.u.virt.list[u].source_dset.file_name = tmp_layout.storage.u.virt.list[u].parsed_source_file_name->name_segment;
+ else
+ tmp_layout.storage.u.virt.list[u].source_dset.file_name = tmp_layout.storage.u.virt.list[u].source_file_name;
+ if(tmp_layout.storage.u.virt.list[u].parsed_source_dset_name)
+ tmp_layout.storage.u.virt.list[u].source_dset.dset_name = tmp_layout.storage.u.virt.list[u].parsed_source_dset_name->name_segment;
+ else
+ tmp_layout.storage.u.virt.list[u].source_dset.dset_name = tmp_layout.storage.u.virt.list[u].source_dset_name;
+ } /* end if */
+
+ /* unlim_dim fields */
+ tmp_layout.storage.u.virt.list[u].unlim_dim_source = H5S_get_select_unlim_dim(tmp_layout.storage.u.virt.list[u].source_select);
+ tmp_layout.storage.u.virt.list[u].unlim_dim_virtual = H5S_get_select_unlim_dim(tmp_layout.storage.u.virt.list[u].source_dset.virtual_select);
+ tmp_layout.storage.u.virt.list[u].unlim_extent_source = HSIZE_UNDEF;
+ tmp_layout.storage.u.virt.list[u].unlim_extent_virtual = HSIZE_UNDEF;
+ tmp_layout.storage.u.virt.list[u].clip_size_source = HSIZE_UNDEF;
+ tmp_layout.storage.u.virt.list[u].clip_size_virtual = HSIZE_UNDEF;
+
+ /* Clipped selections */
+ if(tmp_layout.storage.u.virt.list[u].unlim_dim_virtual < 0) {
+ tmp_layout.storage.u.virt.list[u].source_dset.clipped_source_select = tmp_layout.storage.u.virt.list[u].source_select;
+ tmp_layout.storage.u.virt.list[u].source_dset.clipped_virtual_select = tmp_layout.storage.u.virt.list[u].source_dset.virtual_select;
+ } /* end if */
+
+ /* Update min_dims */
+ if(H5D_virtual_update_min_dims(&tmp_layout, u) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "unable to update virtual dataset minimum dimensions")
+ } /* end for */
+
+ /* Point at the newly set up struct */
+ layout = &tmp_layout;
+ } /* end else */
+ } /* end block */
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -546,6 +730,41 @@ done:
/*-------------------------------------------------------------------------
+ * Function: H5P__dcrt_layout_del
+ *
+ * Purpose: Frees memory used to store the layout property
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Neil Fortner
+ * Tuesday, Feb 10, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5P__dcrt_layout_del(hid_t H5_ATTR_UNUSED prop_id,
+ const char H5_ATTR_UNUSED *name, size_t H5_ATTR_UNUSED size,
+ void *value)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(value);
+
+ /* Reset the old layout */
+ if(((H5O_layout_t *)value)->type == H5D_VIRTUAL) /* Temp hack until proper fix is in trunk */
+ if(H5O_msg_reset(H5O_LAYOUT_ID, value) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTFREE, FAIL, "can't release layout message")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5P__dcrt_layout_del() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5P__dcrt_layout_cmp
*
* Purpose: Callback routine which is called whenever the layout
@@ -605,6 +824,51 @@ H5P__dcrt_layout_cmp(const void *_layout1, const void *_layout2, size_t H5_ATTR_
} /* end case */
break;
+ case H5D_VIRTUAL:
+ {
+ htri_t equal;
+ int strcmp_ret;
+ size_t u; /* Local index variable */
+
+ /* Compare number of mappings */
+ if(layout1->storage.u.virt.list_nused < layout2->storage.u.virt.list_nused) HGOTO_DONE(-1)
+ if(layout1->storage.u.virt.list_nused > layout2->storage.u.virt.list_nused) HGOTO_DONE(1)
+
+ /* Iterate over mappings */
+ for(u = 0; u < layout1->storage.u.virt.list_nused; u++) {
+ /* Compare virtual spaces. Note we cannot tell which is
+ * "greater", so just return 1 if different, -1 on failure.
+ */
+ if((equal = H5S_extent_equal(layout1->storage.u.virt.list[u].source_dset.virtual_select, layout2->storage.u.virt.list[u].source_dset.virtual_select)) < 0) HGOTO_DONE(-1)
+ if(!equal)
+ HGOTO_DONE(1)
+ if((equal = H5S_select_shape_same(layout1->storage.u.virt.list[u].source_dset.virtual_select, layout2->storage.u.virt.list[u].source_dset.virtual_select)) < 0) HGOTO_DONE(-1)
+ if(!equal)
+ HGOTO_DONE(1)
+
+ /* Compare source file names */
+ strcmp_ret = HDstrcmp(layout1->storage.u.virt.list[u].source_file_name, layout2->storage.u.virt.list[u].source_file_name);
+ if(strcmp_ret < 0) HGOTO_DONE(-1)
+ if(strcmp_ret > 0) HGOTO_DONE(1)
+
+ /* Compare source dataset names */
+ strcmp_ret = HDstrcmp(layout1->storage.u.virt.list[u].source_dset_name, layout2->storage.u.virt.list[u].source_dset_name);
+ if(strcmp_ret < 0) HGOTO_DONE(-1)
+ if(strcmp_ret > 0) HGOTO_DONE(1)
+
+ /* Compare source spaces. Note we cannot tell which is
+ * "greater", so just return 1 if different, -1 on failure.
+ */
+ if((equal = H5S_extent_equal(layout1->storage.u.virt.list[u].source_select, layout2->storage.u.virt.list[u].source_select)) < 0) HGOTO_DONE(-1)
+ if(!equal)
+ HGOTO_DONE(1)
+ if((equal = H5S_select_shape_same(layout1->storage.u.virt.list[u].source_select, layout2->storage.u.virt.list[u].source_select)) < 0) HGOTO_DONE(-1)
+ if(!equal)
+ HGOTO_DONE(1)
+ } /* end for */
+ } /* end block */
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -617,6 +881,40 @@ done:
/*-------------------------------------------------------------------------
+ * Function: H5P__dcrt_layout_close
+ *
+ * Purpose: Frees memory used to store the layout property
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Neil Fortner
+ * Tuesday, Feb 10, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+H5P__dcrt_layout_close(const char H5_ATTR_UNUSED *name,
+ size_t H5_ATTR_UNUSED size, void *value)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_STATIC
+
+ /* Sanity check */
+ HDassert(value);
+
+ /* Reset the old layout */
+ if(((H5O_layout_t *)value)->type == H5D_VIRTUAL) /* Temp hack until proper fix is in trunk */
+ if(H5O_msg_reset(H5O_LAYOUT_ID, value) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTFREE, FAIL, "can't release layout message")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5P__dcrt_layout_close() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5P__fill_value_enc
*
* Purpose: Callback routine which is called whenever the fill value
@@ -1110,6 +1408,7 @@ done:
static herr_t
H5P__set_layout(H5P_genplist_t *plist, const H5O_layout_t *layout)
{
+ H5O_layout_t old_layout; /* Layout propertry already on list */
unsigned alloc_time_state; /* State of allocation time property */
herr_t ret_value = SUCCEED; /* return value */
@@ -1141,6 +1440,10 @@ H5P__set_layout(H5P_genplist_t *plist, const H5O_layout_t *layout)
fill.alloc_time = H5D_ALLOC_TIME_INCR;
break;
+ case H5D_VIRTUAL:
+ fill.alloc_time = H5D_ALLOC_TIME_INCR;
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -1152,6 +1455,14 @@ H5P__set_layout(H5P_genplist_t *plist, const H5O_layout_t *layout)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set space allocation time")
} /* end if */
+ /* Get the old layout */
+ if(H5P_get(plist, H5D_CRT_LAYOUT_NAME, &old_layout) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get layout")
+
+ /* Reset the old layout before overwriting it */
+ if(H5O_msg_reset(H5O_LAYOUT_ID, &old_layout) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTFREE, FAIL, "can't release layout message")
+
/* Set layout value */
if(H5P_set(plist, H5D_CRT_LAYOUT_NAME, layout) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "can't set layout")
@@ -1167,7 +1478,8 @@ done:
*
* Purpose: Set the default layout information for the various types of
* dataset layouts
- *
+
+
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
@@ -1181,13 +1493,18 @@ H5P__init_def_layout(void)
const H5O_layout_chunk_t def_layout_chunk = H5D_DEF_LAYOUT_CHUNK_INIT;
const H5O_storage_compact_t def_store_compact = H5D_DEF_STORAGE_COMPACT_INIT;
const H5O_storage_chunk_t def_store_chunk = H5D_DEF_STORAGE_CHUNK_INIT;
+ const H5O_storage_virtual_t def_store_virtual = H5D_DEF_STORAGE_VIRTUAL_INIT;
FUNC_ENTER_STATIC_NOERR
/* Initialize the default layout info for non-contigous layouts */
+ H5D_def_layout_compact_g.storage.type = H5D_COMPACT;
H5D_def_layout_compact_g.storage.u.compact = def_store_compact;
H5D_def_layout_chunk_g.u.chunk = def_layout_chunk;
+ H5D_def_layout_chunk_g.storage.type = H5D_CHUNKED;
H5D_def_layout_chunk_g.storage.u.chunk = def_store_chunk;
+ H5D_def_layout_virtual_g.storage.type = H5D_VIRTUAL;
+ H5D_def_layout_virtual_g.storage.u.virt = def_store_virtual;
/* Note that we've initialized the default values */
H5P_dcrt_def_layout_init_g = TRUE;
@@ -1257,6 +1574,10 @@ H5Pset_layout(hid_t plist_id, H5D_layout_t layout_type)
layout = &H5D_def_layout_chunk_g;
break;
+ case H5D_VIRTUAL:
+ layout = &H5D_def_layout_virtual_g;
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
@@ -1462,6 +1783,528 @@ done:
/*-------------------------------------------------------------------------
+ * Function: H5Pset_virtual
+ *
+ * Purpose: Maps elements of the virtual dataset described by the
+ * virtual dataspace identifier vspace_id to the elements of
+ * the source dataset described by the source dataset
+ * dataspace identifier src_space_id. The source dataset is
+ * identified by the name of the file where it is located,
+ * src_file_name, and the name of the dataset, src_dset_name.
+ *
+ * As a side effect, the layout method is changed to
+ * H5D_VIRTUAL.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * Friday, February 13, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Pset_virtual(hid_t dcpl_id, hid_t vspace_id, const char *src_file_name,
+ const char *src_dset_name, hid_t src_space_id)
+{
+ H5P_genplist_t *plist; /* Property list pointer */
+ H5O_layout_t layout; /* Layout information for setting chunk info */
+ H5S_t *vspace; /* Virtual dataset space selection */
+ H5S_t *src_space; /* Source dataset space selection */
+ hbool_t new_layout = FALSE; /* Whether we are adding a new virtual layout message to plist */
+ H5O_storage_virtual_ent_t *ent = NULL; /* Convenience pointer to new VDS entry */
+ hbool_t adding_entry = FALSE; /* Whether we are in the middle of adding an entry */
+ H5O_storage_virtual_ent_t *old_list = NULL; /* List pointer previously on property list */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE5("e", "ii*s*si", dcpl_id, vspace_id, src_file_name, src_dset_name,
+ src_space_id);
+
+ /* Check arguments */
+ if(!src_file_name)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "source file name not provided")
+ if(!src_dset_name)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "source dataset name not provided")
+ if(NULL == (vspace = (H5S_t *)H5I_object_verify(vspace_id, H5I_DATASPACE)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
+ if(NULL == (src_space = (H5S_t *)H5I_object_verify(src_space_id, H5I_DATASPACE)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
+
+ /* Check selections for validity */
+ if(H5D_virtual_check_mapping_pre(vspace, src_space, H5O_VIRTUAL_STATUS_USER) < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid mapping selections")
+
+#ifndef H5_HAVE_C99_DESIGNATED_INITIALIZER
+ /* If the compiler doesn't support C99 designated initializers, check if
+ * the default layout structs have been initialized yet or not. *ick* -QAK
+ */
+ if(!H5P_dcrt_def_layout_init_g)
+ if(H5P__init_def_layout() < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "can't initialize default layout info")
+#endif /* H5_HAVE_C99_DESIGNATED_INITIALIZER */
+
+ /* Get the plist structure */
+ if(NULL == (plist = H5P_object_verify(dcpl_id, H5P_DATASET_CREATE)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
+
+ /* Get the current layout */
+ if(H5P_get(plist, H5D_CRT_LAYOUT_NAME, &layout) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get layout")
+
+ /* If the layout was not already virtual, Start with default virtual layout.
+ * Otherwise, add the mapping to the current list. */
+ if(layout.type == H5D_VIRTUAL)
+ /* Save old list pointer for error recovery */
+ old_list = layout.storage.u.virt.list;
+ else {
+ new_layout = TRUE;
+ HDmemcpy(&layout, &H5D_def_layout_virtual_g, sizeof(H5D_def_layout_virtual_g));
+
+ HDassert(layout.storage.u.virt.list_nalloc == 0);
+ } /* end else */
+
+ /* Expand list if necessary */
+ if(layout.storage.u.virt.list_nalloc == 0) {
+ /* Allocate initial entry list */
+ if(NULL == (layout.storage.u.virt.list = (H5O_storage_virtual_ent_t *)H5MM_calloc(H5D_VIRTUAL_DEF_LIST_SIZE * sizeof(H5O_storage_virtual_ent_t))))
+ HGOTO_ERROR(H5E_PLIST, H5E_RESOURCE, FAIL, "can't allocate virtual dataset mapping list")
+ adding_entry = TRUE;
+ layout.storage.u.virt.list_nalloc = H5D_VIRTUAL_DEF_LIST_SIZE;
+ } /* end if */
+ else if(layout.storage.u.virt.list_nused
+ == layout.storage.u.virt.list_nalloc) {
+ /* Double size of entry list. Make sure to zero out new memory. */
+ if(NULL == (layout.storage.u.virt.list = (H5O_storage_virtual_ent_t *)H5MM_realloc(layout.storage.u.virt.list, (size_t)2 * layout.storage.u.virt.list_nalloc * sizeof(H5O_storage_virtual_ent_t))))
+ HGOTO_ERROR(H5E_PLIST, H5E_RESOURCE, FAIL, "can't reallocate virtual dataset mapping list")
+ adding_entry = TRUE;
+ (void)HDmemset(layout.storage.u.virt.list + layout.storage.u.virt.list_nalloc, 0, layout.storage.u.virt.list_nalloc * sizeof(H5O_storage_virtual_ent_t));
+ layout.storage.u.virt.list_nalloc *= (size_t)2;
+ } /* end if */
+
+ /* Add virtual dataset mapping entry */
+ ent = &layout.storage.u.virt.list[layout.storage.u.virt.list_nused];
+ if(NULL == (ent->source_dset.virtual_select = H5S_copy(vspace, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTCOPY, FAIL, "unable to copy virtual selection")
+ adding_entry = TRUE;
+ if(NULL == (ent->source_file_name = HDstrdup(src_file_name)))
+ HGOTO_ERROR(H5E_PLIST, H5E_RESOURCE, FAIL, "can't duplicate source file name")
+ if(NULL == (ent->source_dset_name = HDstrdup(src_dset_name)))
+ HGOTO_ERROR(H5E_PLIST, H5E_RESOURCE, FAIL, "can't duplicate source file name")
+ if(NULL == (ent->source_select = H5S_copy(src_space, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTCOPY, FAIL, "unable to copy source selection")
+ if(H5D_virtual_parse_source_name(ent->source_file_name, &ent->parsed_source_file_name, &ent->psfn_static_strlen, &ent->psfn_nsubs) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "can't parse source file name")
+ if(H5D_virtual_parse_source_name(ent->source_dset_name, &ent->parsed_source_dset_name, &ent->psdn_static_strlen, &ent->psdn_nsubs) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "can't parse source dataset name")
+ if((ent->psfn_nsubs == 0) && (ent->psdn_nsubs == 0)) {
+ if(ent->parsed_source_file_name)
+ ent->source_dset.file_name = ent->parsed_source_file_name->name_segment;
+ else
+ ent->source_dset.file_name = ent->source_file_name;
+ if(ent->parsed_source_dset_name)
+ ent->source_dset.dset_name = ent->parsed_source_dset_name->name_segment;
+ else
+ ent->source_dset.dset_name = ent->source_dset_name;
+ } /* end if */
+ ent->unlim_dim_source = H5S_get_select_unlim_dim(src_space);
+ ent->unlim_dim_virtual = H5S_get_select_unlim_dim(vspace);
+ if(ent->unlim_dim_virtual < 0) {
+ ent->source_dset.clipped_source_select = ent->source_select;
+ ent->source_dset.clipped_virtual_select = ent->source_dset.virtual_select;
+ } /* end if */
+ ent->unlim_extent_source = HSIZE_UNDEF;
+ ent->unlim_extent_virtual = HSIZE_UNDEF;
+ ent->clip_size_source = HSIZE_UNDEF;
+ ent->clip_size_virtual = HSIZE_UNDEF;
+ ent->source_space_status = H5O_VIRTUAL_STATUS_USER;
+ ent->virtual_space_status = H5O_VIRTUAL_STATUS_USER;
+
+ /* Check entry for validity */
+ if(H5D_virtual_check_mapping_post(ent) < 0)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid mapping entry")
+
+ /* Update min_dims */
+ if(H5D_virtual_update_min_dims(&layout, layout.storage.u.virt.list_nused) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "unable to update virtual dataset minimum dimensions")
+
+ /* Finish adding entry */
+ layout.storage.u.virt.list_nused++;
+
+done:
+ /* Only need to do things if we started to add an entry */
+ if(adding_entry) {
+ hbool_t free_list = FALSE;
+
+ /* Set VDS layout information in property list. If we are adding a new
+ * layout, use H5P__set_layout so other fields are initialized properly.
+ * If we are extending the layout, just use H5P_set directly so we don't
+ * mess with anything else. Put this after the done: label because the
+ * original list may no longer be valid due to the use of realloc(), so
+ * we want to make sure the list is available if possible. */
+ if(new_layout) {
+ if(H5P__set_layout(plist, &layout) < 0) {
+ HDONE_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set layout")
+ free_list = TRUE;
+ } /* end if */
+ } /* end if */
+ else
+ if(H5P_set(plist, H5D_CRT_LAYOUT_NAME, &layout) < 0) {
+ HDONE_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set layout")
+ if(old_list != layout.storage.u.virt.list)
+ free_list = TRUE;
+ } /* end if */
+
+ /* Check if the entry has been partly allocated but not added to the
+ * property list or not included in list_nused */
+ if(ret_value < 0) {
+ /* Free incomplete entry if present */
+ if(ent) {
+ ent->source_file_name = (char *)H5MM_xfree(ent->source_file_name);
+ ent->source_dset_name = (char *)H5MM_xfree(ent->source_dset_name);
+ if(ent->source_dset.virtual_select && H5S_close(ent->source_dset.virtual_select) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release virtual selection")
+ ent->source_dset.virtual_select = NULL;
+ if(ent->source_select && H5S_close(ent->source_select) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release source selection")
+ ent->source_select = NULL;
+ H5D_virtual_free_parsed_name(ent->parsed_source_file_name);
+ ent->parsed_source_file_name = NULL;
+ H5D_virtual_free_parsed_name(ent->parsed_source_dset_name);
+ ent->parsed_source_dset_name = NULL;
+ } /* end if */
+
+ /* Free list if necessary */
+ if(free_list)
+ layout.storage.u.virt.list = (H5O_storage_virtual_ent_t *)H5MM_xfree(layout.storage.u.virt.list);
+ } /* end if */
+ } /* end if */
+
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pset_virtual() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5Pget_virtual_count
+ *
+ * Purpose: Gets the number of mappings for the virtual dataset that
+ * has a creation property list specified by the dcpl_id
+ * parameter.
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * Friday, February 13, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5Pget_virtual_count(hid_t dcpl_id, size_t *count/*out*/)
+{
+ H5P_genplist_t *plist; /* Property list pointer */
+ H5O_layout_t layout; /* Layout information */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE2("e", "ix", dcpl_id, count);
+
+ if(count) {
+ /* Get the plist structure */
+ if(NULL == (plist = H5P_object_verify(dcpl_id, H5P_DATASET_CREATE)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
+
+ /* Retrieve the layout property */
+ if(H5P_get(plist, H5D_CRT_LAYOUT_NAME, &layout) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't get layout")
+ if(H5D_VIRTUAL != layout.type)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a virtual storage layout")
+
+ /* Return the number of mappings */
+ *count = layout.storage.u.virt.list_nused;
+ } /* end if */
+
+done:
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pget_virtual_count() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5Pget_virtual_vspace
+ *
+ * Purpose: Takes the dataset creation property list for the virtual
+ * dataset, dcpl_id, and the mapping index, index, and
+ * returns a dataspace identifier for the selection within
+ * the virtual dataset used in the mapping.
+ *
+ * Return: Returns a dataspace identifier if successful; otherwise
+ * returns a negative value.
+ *
+ * Programmer: Neil Fortner
+ * Friday, February 13, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+hid_t
+H5Pget_virtual_vspace(hid_t dcpl_id, size_t index)
+{
+ H5P_genplist_t *plist; /* Property list pointer */
+ H5O_layout_t layout; /* Layout information */
+ H5S_t *space = NULL; /* Dataspace pointer */
+ hid_t ret_value; /* Return value */
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE2("i", "iz", dcpl_id, index);
+
+ /* Get the plist structure */
+ if(NULL == (plist = H5P_object_verify(dcpl_id, H5P_DATASET_CREATE)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
+
+ /* Retrieve the layout property */
+ if(H5P_get(plist, H5D_CRT_LAYOUT_NAME, &layout) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't get layout")
+ if(H5D_VIRTUAL != layout.type)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a virtual storage layout")
+
+ /* Get the virtual space */
+ if(index >= layout.storage.u.virt.list_nused)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)")
+ HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc);
+ if(NULL == (space = H5S_copy(layout.storage.u.virt.list[index].source_dset.virtual_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTCOPY, FAIL, "unable to copy virtual selection")
+
+ /* Register ID */
+ if((ret_value = H5I_register(H5I_DATASPACE, space, TRUE)) < 0)
+ HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register data space")
+
+done:
+ /* Free space on failure */
+ if((ret_value < 0) && space)
+ if(H5S_close(space) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release source selection")
+
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pget_virtual_vspace() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5Pget_virtual_srcspace
+ *
+ * Purpose: Takes the dataset creation property list for the virtual
+ * dataset, dcpl_id, and the mapping index, index, and
+ * returns a dataspace identifier for the selection within
+ * the source dataset used in the mapping.
+ *
+ * Return: Returns a dataspace identifier if successful; otherwise
+ * returns a negative value.
+ *
+ * Programmer: Neil Fortner
+ * Saturday, February 14, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+hid_t
+H5Pget_virtual_srcspace(hid_t dcpl_id, size_t index)
+{
+ H5P_genplist_t *plist; /* Property list pointer */
+ H5O_layout_t layout; /* Layout information */
+ H5S_t *space = NULL; /* Dataspace pointer */
+ hid_t ret_value; /* Return value */
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE2("i", "iz", dcpl_id, index);
+
+ /* Get the plist structure */
+ if(NULL == (plist = H5P_object_verify(dcpl_id, H5P_DATASET_CREATE)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
+
+ /* Retrieve the layout property */
+ if(H5P_get(plist, H5D_CRT_LAYOUT_NAME, &layout) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't get layout")
+ if(H5D_VIRTUAL != layout.type)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a virtual storage layout")
+
+ /* Check index */
+ if(index >= layout.storage.u.virt.list_nused)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)")
+ HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc);
+
+ /* Attempt to open source dataset and patch extent if extent status is not
+ * H5O_VIRTUAL_STATUS_CORRECT? -NAF */
+ /* If source space status is H5O_VIRTUAL_STATUS_INVALID, patch with bounds
+ * of selection */
+ if((layout.storage.u.virt.list[index].source_space_status
+ == H5O_VIRTUAL_STATUS_INVALID)
+ && (layout.storage.u.virt.list[index].unlim_dim_source < 0)) {
+ hsize_t bounds_start[H5S_MAX_RANK];
+ hsize_t bounds_end[H5S_MAX_RANK];
+ int rank;
+ int i;
+
+ /* Get rank of source space */
+ if((rank = H5S_GET_EXTENT_NDIMS(layout.storage.u.virt.list[index].source_select)) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get source space rank")
+
+ /* Get bounds of selection */
+ if(H5S_SELECT_BOUNDS(layout.storage.u.virt.list[index].source_select, bounds_start, bounds_end) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get selection bounds")
+
+ /* Adjust bounds to extent */
+ for(i = 0; i < rank; i++)
+ bounds_end[i]++;
+
+ /* Set extent */
+ if(H5S_set_extent_simple(layout.storage.u.virt.list[index].source_select, (unsigned)rank, bounds_end, NULL) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set source space extent")
+
+ /* Update source space status */
+ layout.storage.u.virt.list[index].source_space_status = H5O_VIRTUAL_STATUS_SEL_BOUNDS;
+ } /* end if */
+
+ /* Get the source space */
+ if(NULL == (space = H5S_copy(layout.storage.u.virt.list[index].source_select, FALSE, TRUE)))
+ HGOTO_ERROR(H5E_PLIST, H5E_CANTCOPY, FAIL, "unable to copy source selection")
+
+ /* Register ID */
+ if((ret_value = H5I_register(H5I_DATASPACE, space, TRUE)) < 0)
+ HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register data space")
+
+done:
+ /* Free space on failure */
+ if((ret_value < 0) && space)
+ if(H5S_close(space) < 0)
+ HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release source selection")
+
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pget_virtual_srcspace() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5Pget_virtual_filename
+ *
+ * Purpose: Takes the dataset creation property list for the virtual
+ * dataset, dcpl_id, and the mapping index, index, and
+ * retrieves a name of a file for a source dataset used in
+ * the mapping.
+ *
+ * Up to size characters of the filename are returned in
+ * name; additional characters, if any, are not returned to
+ * the user application.
+ *
+ * If the length of the filename, which determines the
+ * required value of size, is unknown, a preliminary call to
+ * H5Pget_virtual_filename with the last two parameters set
+ * to NULL can be made. The return value of this call will
+ * be the size in bytes of the filename. That value, plus 1
+ * for a NULL terminator, is then assigned to size for a
+ * second H5Pget_virtual_filename call, which will retrieve
+ * the actual filename.
+ *
+ * Return: Returns the length of the name if successful, otherwise
+ * returns a negative value.
+ *
+ * Programmer: Neil Fortner
+ * Saturday, February 14, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+ssize_t
+H5Pget_virtual_filename(hid_t dcpl_id, size_t index, char *name/*out*/,
+ size_t size)
+{
+ H5P_genplist_t *plist; /* Property list pointer */
+ H5O_layout_t layout; /* Layout information */
+ ssize_t ret_value; /* Return value */
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE4("Zs", "izxz", dcpl_id, index, name, size);
+
+ /* Get the plist structure */
+ if(NULL == (plist = H5P_object_verify(dcpl_id, H5P_DATASET_CREATE)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
+
+ /* Retrieve the layout property */
+ if(H5P_get(plist, H5D_CRT_LAYOUT_NAME, &layout) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't get layout")
+ if(H5D_VIRTUAL != layout.type)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a virtual storage layout")
+
+ /* Get the virtual filename */
+ if(index >= layout.storage.u.virt.list_nused)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)")
+ HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc);
+ HDassert(layout.storage.u.virt.list[index].source_file_name);
+ if(name && (size > 0))
+ (void)HDstrncpy(name, layout.storage.u.virt.list[index].source_file_name, size);
+ ret_value = (ssize_t)HDstrlen(layout.storage.u.virt.list[index].source_file_name);
+
+done:
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pget_virtual_filename() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5Pget_virtual_dsetname
+ *
+ * Purpose: Takes the dataset creation property list for the virtual
+ * dataset, dcpl_id, and the mapping index, index, and
+ * retrieves the name of a source dataset used in the mapping.
+ *
+ * Up to size characters of the name are returned in name;
+ * additional characters, if any, are not returned to the
+ * user application.
+ *
+ * If the length of the filename, which determines the
+ * required value of size, is unknown, a preliminary call to
+ * H5Pget_virtual_dsetname with the last two parameters set
+ * to NULL can be made. The return value of this call will
+ * be the size in bytes of the filename. That value, plus 1
+ * for a NULL terminator, is then assigned to size for a
+ * second H5Pget_virtual_dsetname call, which will retrieve
+ * the actual filename.
+ *
+ * Return: Returns the length of the name if successful, otherwise
+ * returns a negative value.
+ *
+ * Programmer: Neil Fortner
+ * Saturday, February 14, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+ssize_t
+H5Pget_virtual_dsetname(hid_t dcpl_id, size_t index, char *name/*out*/,
+ size_t size)
+{
+ H5P_genplist_t *plist; /* Property list pointer */
+ H5O_layout_t layout; /* Layout information */
+ ssize_t ret_value; /* Return value */
+
+ FUNC_ENTER_API(FAIL)
+ H5TRACE4("Zs", "izxz", dcpl_id, index, name, size);
+
+ /* Get the plist structure */
+ if(NULL == (plist = H5P_object_verify(dcpl_id, H5P_DATASET_CREATE)))
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
+
+ /* Retrieve the layout property */
+ if(H5P_get(plist, H5D_CRT_LAYOUT_NAME, &layout) < 0)
+ HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't get layout")
+ if(H5D_VIRTUAL != layout.type)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a virtual storage layout")
+
+ /* Get the virtual filename */
+ if(index >= layout.storage.u.virt.list_nused)
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)")
+ HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc);
+ HDassert(layout.storage.u.virt.list[index].source_dset_name);
+ if(name && (size > 0))
+ (void)HDstrncpy(name, layout.storage.u.virt.list[index].source_dset_name, size);
+ ret_value = (ssize_t)HDstrlen(layout.storage.u.virt.list[index].source_dset_name);
+
+done:
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Pget_virtual_dsetname() */
+
+
+/*-------------------------------------------------------------------------
* Function: H5Pset_external
*
* Purpose: Adds an external file to the list of external files. PLIST_ID
@@ -2302,6 +3145,10 @@ H5Pset_alloc_time(hid_t plist_id, H5D_alloc_time_t alloc_time)
alloc_time = H5D_ALLOC_TIME_INCR;
break;
+ case H5D_VIRTUAL:
+ alloc_time = H5D_ALLOC_TIME_INCR;
+ break;
+
case H5D_LAYOUT_ERROR:
case H5D_NLAYOUTS:
default:
diff --git a/src/H5Ppublic.h b/src/H5Ppublic.h
index f56692c..4929621 100644
--- a/src/H5Ppublic.h
+++ b/src/H5Ppublic.h
@@ -354,6 +354,15 @@ H5_DLL herr_t H5Pset_layout(hid_t plist_id, H5D_layout_t layout);
H5_DLL H5D_layout_t H5Pget_layout(hid_t plist_id);
H5_DLL herr_t H5Pset_chunk(hid_t plist_id, int ndims, const hsize_t dim[/*ndims*/]);
H5_DLL int H5Pget_chunk(hid_t plist_id, int max_ndims, hsize_t dim[]/*out*/);
+H5_DLL herr_t H5Pset_virtual(hid_t dcpl_id, hid_t vspace_id,
+ const char *src_file_name, const char *src_dset_name, hid_t src_space_id);
+H5_DLL herr_t H5Pget_virtual_count(hid_t dcpl_id, size_t *count/*out*/);
+H5_DLL hid_t H5Pget_virtual_vspace(hid_t dcpl_id, size_t index);
+H5_DLL hid_t H5Pget_virtual_srcspace(hid_t dcpl_id, size_t index);
+H5_DLL ssize_t H5Pget_virtual_filename(hid_t dcpl_id, size_t index,
+ char *name/*out*/, size_t size);
+H5_DLL ssize_t H5Pget_virtual_dsetname(hid_t dcpl_id, size_t index,
+ char *name/*out*/, size_t size);
H5_DLL herr_t H5Pset_external(hid_t plist_id, const char *name, off_t offset,
hsize_t size);
H5_DLL int H5Pget_external_count(hid_t plist_id);
@@ -384,6 +393,10 @@ H5_DLL herr_t H5Pget_chunk_cache(hid_t dapl_id,
size_t *rdcc_nslots/*out*/,
size_t *rdcc_nbytes/*out*/,
double *rdcc_w0/*out*/);
+H5_DLL herr_t H5Pset_virtual_view(hid_t plist_id, H5D_vds_view_t view);
+H5_DLL herr_t H5Pget_virtual_view(hid_t plist_id, H5D_vds_view_t *view);
+H5_DLL herr_t H5Pset_virtual_printf_gap(hid_t plist_id, hsize_t gap_size);
+H5_DLL herr_t H5Pget_virtual_printf_gap(hid_t plist_id, hsize_t *gap_size);
/* Dataset xfer property list (DXPL) routines */
H5_DLL herr_t H5Pset_data_transform(hid_t plist_id, const char* expression);
diff --git a/src/H5R.c b/src/H5R.c
index d96f5e6..c9474c7 100644
--- a/src/H5R.c
+++ b/src/H5R.c
@@ -275,7 +275,7 @@ H5R_create(void *_ref, H5G_loc_t *loc, const char *name, H5R_type_t ref_type, H5
HDmemset(ref, 0, H5R_DSET_REG_REF_BUF_SIZE);
/* Get the amount of space required to serialize the selection */
- if((buf_size = H5S_SELECT_SERIAL_SIZE(space)) < 0)
+ if((buf_size = H5S_SELECT_SERIAL_SIZE(loc->oloc->file, space)) < 0)
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTINIT, FAIL, "Invalid amount of space for serializing selection")
/* Increase buffer size to allow for the dataset OID */
@@ -291,7 +291,7 @@ H5R_create(void *_ref, H5G_loc_t *loc, const char *name, H5R_type_t ref_type, H5
H5F_addr_encode(loc->oloc->file, &p, obj_loc.oloc->addr);
/* Serialize the selection into heap buffer */
- if(H5S_SELECT_SERIALIZE(space, &p) < 0)
+ if(H5S_SELECT_SERIALIZE(loc->oloc->file, space, &p) < 0)
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOPY, FAIL, "Unable to serialize selection")
/* Save the serialized buffer for later */
@@ -668,7 +668,7 @@ H5R_get_region(H5F_t *file, hid_t dxpl_id, const void *_ref)
HGOTO_ERROR(H5E_DATASPACE, H5E_NOTFOUND, NULL, "not found")
/* Unserialize the selection */
- if(H5S_SELECT_DESERIALIZE(&ret_value, &p) < 0)
+ if(H5S_SELECT_DESERIALIZE(file, &ret_value, &p) < 0)
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDECODE, NULL, "can't deserialize selection")
done:
diff --git a/src/H5S.c b/src/H5S.c
index 9b37797..d8ab37c 100644
--- a/src/H5S.c
+++ b/src/H5S.c
@@ -52,11 +52,7 @@
/********************/
/* Local Prototypes */
/********************/
-static herr_t H5S_set_extent_simple (H5S_t *space, unsigned rank,
- const hsize_t *dims, const hsize_t *max);
static htri_t H5S_is_simple(const H5S_t *sdim);
-static herr_t H5S_encode(H5S_t *obj, unsigned char *buf, size_t *nalloc);
-static H5S_t *H5S_decode(const unsigned char *buf);
/*********************/
@@ -479,7 +475,40 @@ H5Sextent_copy(hid_t dst_id,hid_t src_id)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
/* Copy */
- if(H5S_extent_copy(&(dst->extent), &(src->extent), TRUE) < 0)
+ if(H5S_extent_copy(dst, src) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "can't copy extent")
+
+done:
+ FUNC_LEAVE_API(ret_value)
+} /* end H5Sextent_copy() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5S_extent_copy
+ *
+ * Purpose: Copies a dataspace extent
+ *
+ * Return: Non-negative on success/Negative on failure
+ *
+ * Programmer: Neil Fortner
+ * Monday, February 23, 2015
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+H5S_extent_copy(H5S_t *dst, const H5S_t *src)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ HDassert(dst);
+ HDassert(src);
+
+ /* Copy extent */
+ if(H5S_extent_copy_real(&(dst->extent), &(src->extent), TRUE) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "can't copy extent")
/* If the selection is 'all', update the number of elements selected in the
@@ -489,12 +518,12 @@ H5Sextent_copy(hid_t dst_id,hid_t src_id)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
done:
- FUNC_LEAVE_API(ret_value)
-} /* end H5Sextent_copy() */
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S_extent_copy() */
/*-------------------------------------------------------------------------
- * Function: H5S_extent_copy
+ * Function: H5S_extent_copy_real
*
* Purpose: Copies a dataspace extent
*
@@ -508,7 +537,7 @@ done:
*-------------------------------------------------------------------------
*/
herr_t
-H5S_extent_copy(H5S_extent_t *dst, const H5S_extent_t *src, hbool_t copy_max)
+H5S_extent_copy_real(H5S_extent_t *dst, const H5S_extent_t *src, hbool_t copy_max)
{
unsigned u;
herr_t ret_value = SUCCEED; /* Return value */
@@ -561,7 +590,7 @@ H5S_extent_copy(H5S_extent_t *dst, const H5S_extent_t *src, hbool_t copy_max)
done:
FUNC_LEAVE_NOAPI(ret_value)
-} /* end H5S_extent_copy() */
+} /* end H5S_extent_copy_real() */
/*-------------------------------------------------------------------------
@@ -597,7 +626,7 @@ H5S_copy(const H5S_t *src, hbool_t share_selection, hbool_t copy_max)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
/* Copy the source dataspace's extent */
- if(H5S_extent_copy(&(dst->extent), &(src->extent), copy_max) < 0)
+ if(H5S_extent_copy_real(&(dst->extent), &(src->extent), copy_max) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, NULL, "can't copy extent")
/* Copy the source dataspace's selection */
@@ -1262,14 +1291,14 @@ done:
*
*-------------------------------------------------------------------------
*/
-static herr_t
+herr_t
H5S_set_extent_simple(H5S_t *space, unsigned rank, const hsize_t *dims,
const hsize_t *max)
{
unsigned u; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
- FUNC_ENTER_NOAPI_NOINIT
+ FUNC_ENTER_NOAPI(FAIL)
/* Check args */
HDassert(rank <= H5S_MAX_RANK);
@@ -1475,7 +1504,7 @@ H5Sencode(hid_t obj_id, void *buf, size_t *nalloc)
if (NULL==(dspace=(H5S_t *)H5I_object_verify(obj_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
- if(H5S_encode(dspace, (unsigned char *)buf, nalloc)<0)
+ if(H5S_encode(dspace, (unsigned char **)&buf, nalloc)<0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTENCODE, FAIL, "can't encode datatype")
done:
@@ -1499,8 +1528,8 @@ done:
*
*-------------------------------------------------------------------------
*/
-static herr_t
-H5S_encode(H5S_t *obj, unsigned char *buf, size_t *nalloc)
+herr_t
+H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc)
{
size_t extent_size; /* Size of serialized dataspace extent */
hssize_t sselect_size; /* Signed size of serialized dataspace selection */
@@ -1519,34 +1548,34 @@ H5S_encode(H5S_t *obj, unsigned char *buf, size_t *nalloc)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace size")
/* Find out the size of buffer needed for selection */
- if((sselect_size = H5S_SELECT_SERIAL_SIZE(obj)) < 0)
+ if((sselect_size = H5S_SELECT_SERIAL_SIZE(f, obj)) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace selection size")
H5_CHECKED_ASSIGN(select_size, size_t, sselect_size, hssize_t);
/* Verify the size of buffer. If it's not big enough, simply return the
* right size without filling the buffer. */
- if(!buf || *nalloc < (extent_size + select_size + 1 + 1 + 1 + 4))
+ if(!*p || *nalloc < (extent_size + select_size + 1 + 1 + 1 + 4))
*nalloc = extent_size + select_size + 1 + 1 + 1 + 4;
else {
/* Encode the type of the information */
- *buf++ = H5O_SDSPACE_ID;
+ *(*p)++ = H5O_SDSPACE_ID;
/* Encode the version of the dataspace information */
- *buf++ = H5S_ENCODE_VERSION;
+ *(*p)++ = H5S_ENCODE_VERSION;
/* Encode the "size of size" information */
- *buf++ = (unsigned char)H5F_SIZEOF_SIZE(f);
+ *(*p)++ = (unsigned char)H5F_SIZEOF_SIZE(f);
/* Encode size of extent information. Pointer is actually moved in this macro. */
- UINT32ENCODE(buf, extent_size);
+ UINT32ENCODE(*p, extent_size);
/* Encode the extent part of dataspace */
- if(H5O_msg_encode(f, H5O_SDSPACE_ID, TRUE, buf, obj) < 0)
+ if(H5O_msg_encode(f, H5O_SDSPACE_ID, TRUE, *p, obj) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTENCODE, FAIL, "can't encode extent space")
- buf += extent_size;
+ *p += extent_size;
/* Encode the selection part of dataspace. */
- if(H5S_SELECT_SERIALIZE(obj, &buf) < 0)
+ if(H5S_SELECT_SERIALIZE(f, obj, p) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTENCODE, FAIL, "can't encode select space")
} /* end else */
@@ -1587,7 +1616,7 @@ H5Sdecode(const void *buf)
if(buf == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "empty buffer")
- if((ds = H5S_decode((const unsigned char *)buf)) == NULL)
+ if((ds = H5S_decode((const unsigned char **)&buf)) == NULL)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, FAIL, "can't decode object")
/* Register the type and return the ID */
@@ -1615,8 +1644,8 @@ done:
*
*-------------------------------------------------------------------------
*/
-static H5S_t*
-H5S_decode(const unsigned char *buf)
+H5S_t*
+H5S_decode(const unsigned char **p)
{
H5S_t *ds;
H5S_extent_t *extent;
@@ -1628,28 +1657,28 @@ H5S_decode(const unsigned char *buf)
FUNC_ENTER_NOAPI_NOINIT
/* Decode the type of the information */
- if(*buf++ != H5O_SDSPACE_ID)
+ if(*(*p)++ != H5O_SDSPACE_ID)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADMESG, NULL, "not an encoded dataspace")
/* Decode the version of the dataspace information */
- if(*buf++ != H5S_ENCODE_VERSION)
+ if(*(*p)++ != H5S_ENCODE_VERSION)
HGOTO_ERROR(H5E_DATASPACE, H5E_VERSION, NULL, "unknown version of encoded dataspace")
/* Decode the "size of size" information */
- sizeof_size = *buf++;
+ sizeof_size = *(*p)++;
/* Allocate "fake" file structure */
if(NULL == (f = H5F_fake_alloc(sizeof_size)))
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct")
/* Decode size of extent information */
- UINT32DECODE(buf, extent_size);
+ UINT32DECODE(*p, extent_size);
/* Decode the extent part of dataspace */
/* (pass mostly bogus file pointer and bogus DXPL) */
- if((extent = (H5S_extent_t *)H5O_msg_decode(f, H5P_DEFAULT, NULL, H5O_SDSPACE_ID, buf))==NULL)
+ if((extent = (H5S_extent_t *)H5O_msg_decode(f, H5P_DEFAULT, NULL, H5O_SDSPACE_ID, *p))==NULL)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, NULL, "can't decode object")
- buf += extent_size;
+ *p += extent_size;
/* Copy the extent into dataspace structure */
if((ds = H5FL_CALLOC(H5S_t))==NULL)
@@ -1665,7 +1694,7 @@ H5S_decode(const unsigned char *buf)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, NULL, "unable to set all selection")
/* Decode the select part of dataspace. I believe this part always exists. */
- if(H5S_SELECT_DESERIALIZE(&ds, &buf) < 0)
+ if(H5S_SELECT_DESERIALIZE(f, &ds, p) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, NULL, "can't decode space selection")
/* Set return value */
@@ -1840,7 +1869,14 @@ done:
/*-------------------------------------------------------------------------
* Function: H5S_set_extent
*
- * Purpose: Modify the dimensions of a dataspace. Based on H5S_extend
+ * Purpose: Modify the dimensions of a dataspace. Based on H5S_extend.
+ *
+ * Note that this function does *not* clip unlimited
+ * selections, because it is not currently necessary to do
+ * that anywhere this function is called. If this becomes
+ * necessary (if the selection could be unlimited and the
+ * clip size is not being handled separately), this function
+ * must be updated to (optionally) clip the selection.
*
* Return: Success: Non-negative
* Failure: Negative
@@ -1923,6 +1959,13 @@ H5S_has_extent(const H5S_t *ds)
*
* Purpose: Modify the dimensions of a dataspace. Based on H5S_extend
*
+ * Note that this function does *not* clip unlimited
+ * selections, because it is not currently necessary to do
+ * that anywhere this function is called. If this becomes
+ * necessary (if the selection could be unlimited and the
+ * clip size is not being handled separately), this function
+ * must be updated to (optionally) clip the selection.
+ *
* Return: Success: Non-negative
* Failure: Negative
*
diff --git a/src/H5Sall.c b/src/H5Sall.c
index 7eab8b3..7e33980 100644
--- a/src/H5Sall.c
+++ b/src/H5Sall.c
@@ -38,11 +38,14 @@ static herr_t H5S_all_get_seq_list(const H5S_t *space, unsigned flags,
size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len);
static herr_t H5S_all_release(H5S_t *space);
static htri_t H5S_all_is_valid(const H5S_t *space);
-static hssize_t H5S_all_serial_size(const H5S_t *space);
-static herr_t H5S_all_serialize(const H5S_t *space, uint8_t **p);
-static herr_t H5S_all_deserialize(H5S_t *space, const uint8_t **p);
+static hssize_t H5S_all_serial_size(const H5F_t *f, const H5S_t *space);
+static herr_t H5S_all_serialize(const H5F_t *f, const H5S_t *space,
+ uint8_t **p);
+static herr_t H5S_all_deserialize(const H5F_t *f, H5S_t *space,
+ uint32_t version, uint8_t flags, const uint8_t **p);
static herr_t H5S_all_bounds(const H5S_t *space, hsize_t *start, hsize_t *end);
static herr_t H5S_all_offset(const H5S_t *space, hsize_t *off);
+static int H5S_all_unlim_dim(const H5S_t *space);
static htri_t H5S_all_is_contiguous(const H5S_t *space);
static htri_t H5S_all_is_single(const H5S_t *space);
static htri_t H5S_all_is_regular(const H5S_t *space);
@@ -74,6 +77,8 @@ const H5S_select_class_t H5S_sel_all[1] = {{
H5S_all_deserialize,
H5S_all_bounds,
H5S_all_offset,
+ H5S_all_unlim_dim,
+ NULL,
H5S_all_is_contiguous,
H5S_all_is_single,
H5S_all_is_regular,
@@ -463,8 +468,9 @@ H5S_all_is_valid (const H5S_t H5_ATTR_UNUSED *space)
Determine the number of bytes needed to store the serialized "all"
selection information.
USAGE
- hssize_t H5S_all_serial_size(space)
- H5S_t *space; IN: Dataspace pointer to query
+ hssize_t H5S_all_serial_size(f, space)
+ H5F_t *f IN: File pointer
+ H5S_t *space; IN: Dataspace pointer to query
RETURNS
The number of bytes required on success, negative on an error.
DESCRIPTION
@@ -476,7 +482,8 @@ H5S_all_is_valid (const H5S_t H5_ATTR_UNUSED *space)
REVISION LOG
--------------------------------------------------------------------------*/
static hssize_t
-H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space)
+H5S_all_serial_size(const H5F_t H5_ATTR_UNUSED *f,
+ const H5S_t H5_ATTR_UNUSED *space)
{
FUNC_ENTER_NOAPI_NOINIT_NOERR
@@ -496,7 +503,8 @@ H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space)
PURPOSE
Serialize the current selection into a user-provided buffer.
USAGE
- herr_t H5S_all_serialize(space, p)
+ herr_t H5S_all_serialize(f, space, p)
+ H5F_t *f IN: File pointer
const H5S_t *space; IN: Dataspace with selection to serialize
uint8_t **p; OUT: Pointer to buffer to put serialized
selection. Will be advanced to end of
@@ -512,7 +520,8 @@ H5S_all_serial_size (const H5S_t H5_ATTR_UNUSED *space)
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S_all_serialize (const H5S_t *space, uint8_t **p)
+H5S_all_serialize(const H5F_t H5_ATTR_UNUSED *f, const H5S_t *space,
+ uint8_t **p)
{
FUNC_ENTER_NOAPI_NOINIT_NOERR
@@ -537,8 +546,11 @@ H5S_all_serialize (const H5S_t *space, uint8_t **p)
Deserialize the current selection from a user-provided buffer.
USAGE
herr_t H5S_all_deserialize(space, p)
+ H5F_t *f IN: File pointer
H5S_t *space; IN/OUT: Dataspace pointer to place
selection into
+ uint32_t version IN: Selection version
+ uint8_t flags IN: Selection flags
uint8 **p; OUT: Pointer to buffer holding serialized
selection. Will be advanced to end of
serialized selection.
@@ -553,7 +565,9 @@ H5S_all_serialize (const H5S_t *space, uint8_t **p)
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S_all_deserialize(H5S_t *space, const uint8_t H5_ATTR_UNUSED **p)
+H5S_all_deserialize(const H5F_t H5_ATTR_UNUSED *f, H5S_t *space,
+ uint32_t H5_ATTR_UNUSED version, uint8_t H5_ATTR_UNUSED flags,
+ const uint8_t H5_ATTR_UNUSED **p)
{
herr_t ret_value = SUCCEED; /* return value */
@@ -659,6 +673,36 @@ H5S_all_offset(const H5S_t H5_ATTR_UNUSED *space, hsize_t *offset)
/*--------------------------------------------------------------------------
NAME
+ H5S_all_unlim_dim
+ PURPOSE
+ Return unlimited dimension of selection, or -1 if none
+ USAGE
+ int H5S_all_unlim_dim(space)
+ H5S_t *space; IN: Dataspace pointer to check
+ RETURNS
+ Unlimited dimension of selection, or -1 if none (never fails).
+ DESCRIPTION
+ Returns the index of the unlimited dimension in this selection, or -1
+ if the selection has no unlimited dimension. "All" selections are
+ always unlimited in every dimension, though this is not reflected in
+ other calls, where the selection is "clipped" against the current
+ extent, so for consistency this function always returns -1.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static int
+H5S_all_unlim_dim(const H5S_t H5_ATTR_UNUSED *space)
+{
+ FUNC_ENTER_NOAPI_NOERR
+
+ FUNC_LEAVE_NOAPI(-1)
+} /* end H5S_all_unlim_dim() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
H5S_all_is_contiguous
PURPOSE
Check if a "all" selection is contiguous within the dataspace extent.
@@ -976,6 +1020,7 @@ H5S_all_get_seq_list(const H5S_t H5_ATTR_UNUSED *space, unsigned H5_ATTR_UNUSED
/* Determine the actual number of elements to use */
H5_CHECK_OVERFLOW(iter->elmt_left,hsize_t,size_t);
elem_used=MIN(maxelem,(size_t)iter->elmt_left);
+ HDassert(elem_used > 0);
/* Compute the offset in the dataset */
off[0]=iter->u.all.byte_offset;
diff --git a/src/H5Shyper.c b/src/H5Shyper.c
index 51b5ab6..88a3d21 100644
--- a/src/H5Shyper.c
+++ b/src/H5Shyper.c
@@ -45,6 +45,10 @@ static herr_t H5S_hyper_generate_spans(H5S_t *space);
#ifdef NEW_HYPERSLAB_API
static herr_t H5S_select_select (H5S_t *space1, H5S_seloper_t op, H5S_t *space2);
#endif /*NEW_HYPERSLAB_API*/
+static void H5S__hyper_get_clip_diminfo(hsize_t start, hsize_t stride,
+ hsize_t *count, hsize_t *block, hsize_t clip_size);
+static hsize_t H5S__hyper_get_clip_extent_real(const H5S_t *clip_space,
+ hsize_t num_slices, hbool_t incl_trail);
/* Selection callbacks */
static herr_t H5S_hyper_copy(H5S_t *dst, const H5S_t *src, hbool_t share_selection);
@@ -53,11 +57,16 @@ static herr_t H5S_hyper_get_seq_list(const H5S_t *space, unsigned flags,
size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len);
static herr_t H5S_hyper_release(H5S_t *space);
static htri_t H5S_hyper_is_valid(const H5S_t *space);
-static hssize_t H5S_hyper_serial_size(const H5S_t *space);
-static herr_t H5S_hyper_serialize(const H5S_t *space, uint8_t **p);
-static herr_t H5S_hyper_deserialize(H5S_t *space, const uint8_t **p);
+static hssize_t H5S_hyper_serial_size(const H5F_t *f, const H5S_t *space);
+static herr_t H5S_hyper_serialize(const H5F_t *f, const H5S_t *space,
+ uint8_t **p);
+static herr_t H5S_hyper_deserialize(const H5F_t *f, H5S_t *space,
+ uint32_t version, uint8_t flags, const uint8_t **p);
static herr_t H5S_hyper_bounds(const H5S_t *space, hsize_t *start, hsize_t *end);
static herr_t H5S_hyper_offset(const H5S_t *space, hsize_t *offset);
+static int H5S_hyper_unlim_dim(const H5S_t *space);
+static herr_t H5S_hyper_num_elem_non_unlim(const H5S_t *space,
+ hsize_t *num_elem_non_unlim);
static htri_t H5S_hyper_is_contiguous(const H5S_t *space);
static htri_t H5S_hyper_is_single(const H5S_t *space);
static htri_t H5S_hyper_is_regular(const H5S_t *space);
@@ -94,6 +103,8 @@ const H5S_select_class_t H5S_sel_hyper[1] = {{
H5S_hyper_deserialize,
H5S_hyper_bounds,
H5S_hyper_offset,
+ H5S_hyper_unlim_dim,
+ H5S_hyper_num_elem_non_unlim,
H5S_hyper_is_contiguous,
H5S_hyper_is_single,
H5S_hyper_is_regular,
@@ -248,6 +259,7 @@ H5S_hyper_iter_init(H5S_sel_iter_t *iter, const H5S_t *space)
/* Check args */
HDassert(space && H5S_SEL_HYPERSLABS == H5S_GET_SELECT_TYPE(space));
HDassert(iter);
+ HDassert(space->select.sel_info.hslab->unlim_dim < 0);
/* Initialize the number of points to iterate over */
iter->elmt_left = space->select.num_elem;
@@ -1644,6 +1656,8 @@ H5S_hyper_copy (H5S_t *dst, const H5S_t *src, hbool_t share_selection)
dst_hslab->app_diminfo[u]=src_hslab->app_diminfo[u];
} /* end for */
} /* end if */
+ dst_hslab->unlim_dim = src_hslab->unlim_dim;
+ dst_hslab->num_elem_non_unlim = src_hslab->num_elem_non_unlim;
dst->select.sel_info.hslab->span_lst=src->select.sel_info.hslab->span_lst;
/* Check if there is hyperslab span information to copy */
@@ -1759,6 +1773,10 @@ H5S_hyper_is_valid (const H5S_t *space)
HDassert(space);
+ /* Check for unlimited selection */
+ if(space->select.sel_info.hslab->unlim_dim >= 0)
+ HGOTO_DONE(FALSE)
+
/* Check for a "regular" hyperslab selection */
if(space->select.sel_info.hslab->diminfo_valid) {
const H5S_hyper_dim_t *diminfo=space->select.sel_info.hslab->opt_diminfo; /* local alias for diminfo */
@@ -1863,6 +1881,14 @@ H5S_get_select_hyper_nblocks(H5S_t *space)
FUNC_ENTER_NOAPI_NOINIT_NOERR
HDassert(space);
+ HDassert(space->select.sel_info.hslab->unlim_dim < 0);
+
+ /* Check for unlimited selection */
+ if((space->select.sel_info.hslab->unlim_dim >= 0)
+ && space->select.sel_info.hslab->app_diminfo[space->select.sel_info.hslab->unlim_dim].count == H5S_UNLIMITED) {
+ HDassert(space->select.sel_info.hslab->diminfo_valid);
+ HGOTO_DONE(H5S_UNLIMITED)
+ } /* end if */
/* Check for a "regular" hyperslab selection */
if(space->select.sel_info.hslab->diminfo_valid) {
@@ -1875,6 +1901,7 @@ H5S_get_select_hyper_nblocks(H5S_t *space)
else
ret_value = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst);
+done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5S_get_select_hyper_nblocks() */
@@ -1910,6 +1937,8 @@ H5Sget_select_hyper_nblocks(hid_t spaceid)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data space")
if(H5S_GET_SELECT_TYPE(space) != H5S_SEL_HYPERSLABS)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a hyperslab selection")
+ if(space->select.sel_info.hslab->unlim_dim >= 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "cannot get number of blocks for unlimited selection")
ret_value = (hssize_t)H5S_get_select_hyper_nblocks(space);
@@ -1925,8 +1954,9 @@ done:
Determine the number of bytes needed to store the serialized hyperslab
selection information.
USAGE
- hssize_t H5S_hyper_serial_size(space)
- H5S_t *space; IN: Dataspace pointer to query
+ hssize_t H5S_hyper_serial_size(f, space)
+ H5F_t *f IN: File pointer
+ H5S_t *space; IN: Dataspace pointer to query
RETURNS
The number of bytes required on success, negative on an error.
DESCRIPTION
@@ -1938,7 +1968,7 @@ done:
REVISION LOG
--------------------------------------------------------------------------*/
static hssize_t
-H5S_hyper_serial_size(const H5S_t *space)
+H5S_hyper_serial_size(const H5F_t *f, const H5S_t *space)
{
unsigned u; /* Counter */
hsize_t block_count; /* block counter for regular hyperslabs */
@@ -1948,24 +1978,41 @@ H5S_hyper_serial_size(const H5S_t *space)
HDassert(space);
- /* Basic number of bytes required to serialize hyperslab selection:
- * <type (4 bytes)> + <version (4 bytes)> + <padding (4 bytes)> +
- * <length (4 bytes)> + <rank (4 bytes)> + <# of blocks (4 bytes)> = 24 bytes
- */
- ret_value = 24;
+ /* Check for version (right now, an unlimited dimension is the only thing
+ * that would bump the version) */
+ if(space->select.sel_info.hslab->unlim_dim >= 0)
+ /* Version 2 */
+ /* Size required is always:
+ * <type (4 bytes)> + <version (4 bytes)> + <flags (1 byte)> +
+ * <length (4 bytes)> + <rank (4 bytes)> +
+ * (4 * <rank> * <start/stride/count/block (sizeof_size bytes)>) =
+ * 17 + (4 * sizeof_size) bytes
+ */
+ ret_value = (hssize_t)17 + ((hssize_t)4 * (hssize_t)space->extent.rank
+ * (hssize_t)H5F_SIZEOF_SIZE(f));
+ else {
+ /* Version 1 */
+ /* Basic number of bytes required to serialize hyperslab selection:
+ * <type (4 bytes)> + <version (4 bytes)> + <padding (4 bytes)> +
+ * <length (4 bytes)> + <rank (4 bytes)> + <# of blocks (4 bytes)>
+ * = 24 bytes
+ */
+ ret_value = 24;
- /* Check for a "regular" hyperslab selection */
- if(space->select.sel_info.hslab->diminfo_valid) {
- /* Check each dimension */
- for(block_count = 1, u = 0; u < space->extent.rank; u++)
- block_count *= space->select.sel_info.hslab->opt_diminfo[u].count;
- } /* end if */
- else
- /* Spin through hyperslab spans, adding 8 * rank bytes for each block */
- block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst);
+ /* Check for a "regular" hyperslab selection */
+ if(space->select.sel_info.hslab->diminfo_valid) {
+ /* Check each dimension */
+ for(block_count = 1, u = 0; u < space->extent.rank; u++)
+ block_count *= space->select.sel_info.hslab->opt_diminfo[u].count;
+ } /* end if */
+ else
+ /* Spin through hyperslab spans, adding 8 * rank bytes for each
+ * block */
+ block_count = H5S_hyper_span_nblocks(space->select.sel_info.hslab->span_lst);
- H5_CHECK_OVERFLOW((8 * space->extent.rank * block_count), hsize_t, hssize_t);
- ret_value += (hssize_t)(8 * block_count * space->extent.rank);
+ H5_CHECK_OVERFLOW((8 * space->extent.rank * block_count), hsize_t, hssize_t);
+ ret_value += (hssize_t)(8 * block_count * space->extent.rank);
+ } /* end else */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_hyper_serial_size() */
@@ -1994,7 +2041,8 @@ H5S_hyper_serial_size(const H5S_t *space)
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S_hyper_serialize_helper (const H5S_hyper_span_info_t *spans, hsize_t *start, hsize_t *end, hsize_t rank, uint8_t **p)
+H5S_hyper_serialize_helper (const H5S_hyper_span_info_t *spans,
+ hsize_t *start, hsize_t *end, hsize_t rank, uint8_t **p)
{
H5S_hyper_span_t *curr; /* Pointer to current hyperslab span */
hsize_t u; /* Index variable */
@@ -2056,6 +2104,7 @@ done:
Serialize the current selection into a user-provided buffer.
USAGE
herr_t H5S_hyper_serialize(space, p)
+ H5F_t *f IN: File pointer
const H5S_t *space; IN: Dataspace with selection to serialize
uint8_t **p; OUT: Pointer to buffer to put serialized
selection. Will be advanced to end of
@@ -2071,7 +2120,7 @@ done:
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S_hyper_serialize (const H5S_t *space, uint8_t **p)
+H5S_hyper_serialize(const H5F_t *f, const H5S_t *space, uint8_t **p)
{
const H5S_hyper_dim_t *diminfo; /* Alias for dataspace's diminfo information */
hsize_t tmp_count[H5O_LAYOUT_NDIMS]; /* Temporary hyperslab counts */
@@ -2081,6 +2130,8 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p)
hsize_t temp_off; /* Offset in a given dimension */
uint8_t *lenp; /* pointer to length location for later storage */
uint32_t len = 0; /* number of bytes used */
+ uint32_t version; /* Version number */
+ uint8_t flags = 0; /* Flags for message */
hsize_t block_count; /* block counter for regular hyperslabs */
unsigned fast_dim; /* Rank of the fastest changing dimension for the dataspace */
unsigned ndims; /* Rank of the dataspace */
@@ -2090,10 +2141,21 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p)
HDassert(space);
+ /* Calculate version */
+ if(space->select.sel_info.hslab->unlim_dim >= 0) {
+ version = 2;
+ flags |= H5S_SELECT_FLAG_UNLIM;
+ } /* end if */
+ else
+ version = 1;
+
/* Store the preamble information */
- UINT32ENCODE(*p, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */
- UINT32ENCODE(*p, (uint32_t)1); /* Store the version number */
- UINT32ENCODE(*p, (uint32_t)0); /* Store the un-used padding */
+ UINT32ENCODE(*p, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */
+ UINT32ENCODE(*p, version); /* Store the version number */
+ if(version >= 2)
+ *(*p)++ = flags; /* Store the flags */
+ else
+ UINT32ENCODE(*p, (uint32_t)0); /* Store the un-used padding */
lenp = *p; /* keep the pointer to the length location for later */
*p += 4; /* skip over space for length */
@@ -2101,8 +2163,23 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p)
UINT32ENCODE(*p, (uint32_t)space->extent.rank);
len += 4;
+ /* If there is an unlimited dimension, only encode opt_unlim_diminfo */
+ if(flags & H5S_SELECT_FLAG_UNLIM) {
+ unsigned i;
+
+ HDassert(H5S_UNLIMITED == HSIZE_UNDEF);
+
+ /* Iterate over dimensions */
+ for(i = 0; i < space->extent.rank; i++) {
+ /* Encode start/stride/block/count */
+ H5F_size_encode(f, p, space->select.sel_info.hslab->opt_diminfo[i].start);
+ H5F_size_encode(f, p, space->select.sel_info.hslab->opt_diminfo[i].stride);
+ H5F_size_encode(f, p, space->select.sel_info.hslab->opt_diminfo[i].count);
+ H5F_size_encode(f, p, space->select.sel_info.hslab->opt_diminfo[i].block);
+ } /* end for */
+ } /* end if */
/* Check for a "regular" hyperslab selection */
- if(space->select.sel_info.hslab->diminfo_valid) {
+ else if(space->select.sel_info.hslab->diminfo_valid) {
unsigned u; /* Local counting variable */
/* Set some convienence values */
@@ -2219,8 +2296,11 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p)
Deserialize the current selection from a user-provided buffer.
USAGE
herr_t H5S_hyper_deserialize(space, p)
+ H5F_t *f IN: File pointer
H5S_t *space; IN/OUT: Dataspace pointer to place
selection into
+ uint32_t version IN: Selection version
+ uint8_t flags IN: Selection flags
uint8 **p; OUT: Pointer to buffer holding serialized
selection. Will be advanced to end of
serialized selection.
@@ -2235,7 +2315,8 @@ H5S_hyper_serialize (const H5S_t *space, uint8_t **p)
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S_hyper_deserialize (H5S_t *space, const uint8_t **p)
+H5S_hyper_deserialize(const H5F_t *f, H5S_t *space,
+ uint32_t H5_ATTR_UNUSED version, uint8_t flags, const uint8_t **p)
{
unsigned rank; /* rank of points */
size_t num_elem=0; /* number of elements in selection */
@@ -2262,32 +2343,54 @@ H5S_hyper_deserialize (H5S_t *space, const uint8_t **p)
/* Deserialize slabs to select */
/* (The header and rank have already beed decoded) */
rank = space->extent.rank; /* Retrieve rank from space */
- UINT32DECODE(*p,num_elem); /* decode the number of points */
- /* Set the count & stride for all blocks */
- for(tcount=count,tstride=stride,j=0; j<rank; j++,tstride++,tcount++) {
- *tcount=1;
- *tstride=1;
- } /* end for */
+ /* If there is an unlimited dimension, only encode opt_unlim_diminfo */
+ if(flags & H5S_SELECT_FLAG_UNLIM) {
+ HDassert(H5S_UNLIMITED == HSIZE_UNDEF);
+ HDassert(version >= 2);
+
+ /* Iterate over dimensions */
+ for(i = 0; i < space->extent.rank; i++) {
+ /* Decode start/stride/block/count */
+ H5F_size_decode(f, p, &start[i]);
+ H5F_size_decode(f, p, &stride[i]);
+ H5F_size_decode(f, p, &count[i]);
+ H5F_size_decode(f, p, &block[i]);
+ } /* end for */
- /* Retrieve the coordinates from the buffer */
- for(i=0; i<num_elem; i++) {
- /* Decode the starting points */
- for(tstart=start,j=0; j<rank; j++,tstart++)
- UINT32DECODE(*p, *tstart);
+ /* Select the hyperslab to the current selection */
+ if((ret_value = H5S_select_hyperslab(space, H5S_SELECT_SET, start, stride, count, block)) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
+ } /* end if */
+ else {
+ /* decode the number of points */
+ UINT32DECODE(*p,num_elem);
- /* Decode the ending points */
- for(tend=end,j=0; j<rank; j++,tend++)
- UINT32DECODE(*p, *tend);
+ /* Set the count & stride for all blocks */
+ for(tcount=count,tstride=stride,j=0; j<rank; j++,tstride++,tcount++) {
+ *tcount=1;
+ *tstride=1;
+ } /* end for */
- /* Change the ending points into blocks */
- for(tblock=block,tstart=start,tend=end,j=0; j<rank; j++,tstart++,tend++,tblock++)
- *tblock=(*tend-*tstart)+1;
+ /* Retrieve the coordinates from the buffer */
+ for(i=0; i<num_elem; i++) {
+ /* Decode the starting points */
+ for(tstart=start,j=0; j<rank; j++,tstart++)
+ UINT32DECODE(*p, *tstart);
- /* Select or add the hyperslab to the current selection */
- if((ret_value=H5S_select_hyperslab(space,(i==0 ? H5S_SELECT_SET : H5S_SELECT_OR),start,stride,count,block))<0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
- } /* end for */
+ /* Decode the ending points */
+ for(tend=end,j=0; j<rank; j++,tend++)
+ UINT32DECODE(*p, *tend);
+
+ /* Change the ending points into blocks */
+ for(tblock=block,tstart=start,tend=end,j=0; j<rank; j++,tstart++,tend++,tblock++)
+ *tblock=(*tend-*tstart)+1;
+
+ /* Select or add the hyperslab to the current selection */
+ if((ret_value=H5S_select_hyperslab(space,(i==0 ? H5S_SELECT_SET : H5S_SELECT_OR),start,stride,count,block))<0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
+ } /* end for */
+ } /* end else */
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -2437,6 +2540,7 @@ H5S_get_select_hyper_blocklist(H5S_t *space, hbool_t internal, hsize_t startbloc
HDassert(space);
HDassert(buf);
+ HDassert(space->select.sel_info.hslab->unlim_dim < 0);
/* Check for a "regular" hyperslab selection */
if(space->select.sel_info.hslab->diminfo_valid) {
@@ -2460,11 +2564,19 @@ H5S_get_select_hyper_blocklist(H5S_t *space, hbool_t internal, hsize_t startbloc
*/
diminfo = space->select.sel_info.hslab->opt_diminfo;
else
- /*
- * Use the "application dimension information" to pass back to the user
- * the blocks they set, not the optimized, internal information.
- */
- diminfo = space->select.sel_info.hslab->app_diminfo;
+ if(space->select.sel_info.hslab->unlim_dim >= 0)
+ /*
+ * There is an unlimited dimension so we must use opt_diminfo as
+ * it has been "clipped" to the current extent.
+ */
+ diminfo = space->select.sel_info.hslab->opt_diminfo;
+ else
+ /*
+ * Use the "application dimension information" to pass back to
+ * the user the blocks they set, not the optimized, internal
+ * information.
+ */
+ diminfo = space->select.sel_info.hslab->app_diminfo;
/* Build the tables of count sizes as well as the initial offset */
for(u = 0; u < ndims; u++) {
@@ -2601,6 +2713,8 @@ H5Sget_select_hyper_blocklist(hid_t spaceid, hsize_t startblock,
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data space")
if(H5S_GET_SELECT_TYPE(space)!=H5S_SEL_HYPERSLABS)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a hyperslab selection")
+ if(space->select.sel_info.hslab->unlim_dim >= 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "cannot get blocklist for unlimited selection")
/* Go get the correct number of blocks */
if(numblocks > 0)
@@ -2743,7 +2857,10 @@ H5S_hyper_bounds(const H5S_t *space, hsize_t *start, hsize_t *end)
start[i] = diminfo[i].start + (hsize_t)space->select.offset[i];
/* Compute the largest location in this dimension */
- end[i] = diminfo[i].start + diminfo[i].stride * (diminfo[i].count - 1) + (diminfo[i].block - 1) + (hsize_t)space->select.offset[i];
+ if((int)i == space->select.sel_info.hslab->unlim_dim)
+ end[i] = H5S_UNLIMITED;
+ else
+ end[i] = diminfo[i].start + diminfo[i].stride * (diminfo[i].count - 1) + (diminfo[i].block - 1) + (hsize_t)space->select.offset[i];
} /* end for */
} /* end if */
else {
@@ -2866,6 +2983,75 @@ done:
/*--------------------------------------------------------------------------
NAME
+ H5S_hyper_unlim_dim
+ PURPOSE
+ Return unlimited dimension of selection, or -1 if none
+ USAGE
+ int H5S_hyper_unlim_dim(space)
+ H5S_t *space; IN: Dataspace pointer to check
+ RETURNS
+ Unlimited dimension of selection, or -1 if none (never fails).
+ DESCRIPTION
+ Returns the index of the unlimited dimension of the selection, or -1
+ if the selection has no unlimited dimension.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static int
+H5S_hyper_unlim_dim(const H5S_t *space)
+{
+ FUNC_ENTER_NOAPI_NOERR
+
+ FUNC_LEAVE_NOAPI(space->select.sel_info.hslab->unlim_dim)
+} /* end H5S_hyper_get_unlim_dim() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S_hyper_num_elem_non_unlim
+ PURPOSE
+ Return number of elements in the non-unlimited dimensions
+ USAGE
+ herr_t H5S_hyper_num_elem_non_unlim(space,num_elem_non_unlim)
+ H5S_t *space; IN: Dataspace pointer to check
+ hsize_t *num_elem_non_unlim; OUT: Number of elements in the non-unlimited dimensions
+ RETURNS
+ Non-negative on success/Negative on failure
+ DESCRIPTION
+ Returns the number of elements in a slice through the non-unlimited
+ dimensions of the selection. Fails if the selection has no unlimited
+ dimension.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static herr_t
+H5S_hyper_num_elem_non_unlim(const H5S_t *space, hsize_t *num_elem_non_unlim)
+{
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity check */
+ HDassert(space);
+ HDassert(num_elem_non_unlim);
+
+ /* Get number of elements in the non-unlimited dimensions */
+ if(space->select.sel_info.hslab->unlim_dim >= 0)
+ *num_elem_non_unlim = space->select.sel_info.hslab->num_elem_non_unlim;
+ else
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "selection has no unlimited dimension")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S_hyper_num_elem_non_unlim() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
H5S_hyper_is_contiguous
PURPOSE
Check if a hyperslab selection is contiguous within the dataspace extent.
@@ -3193,13 +3379,15 @@ H5S_hyper_release(H5S_t *space)
space->select.num_elem = 0;
/* Release irregular hyperslab information */
- if(space->select.sel_info.hslab->span_lst != NULL) {
- if(H5S_hyper_free_span_info(space->select.sel_info.hslab->span_lst) < 0)
- HGOTO_ERROR(H5E_INTERNAL, H5E_CANTFREE, FAIL, "failed to release hyperslab spans")
- } /* end if */
+ if(space->select.sel_info.hslab) {
+ if(space->select.sel_info.hslab->span_lst != NULL) {
+ if(H5S_hyper_free_span_info(space->select.sel_info.hslab->span_lst) < 0)
+ HGOTO_ERROR(H5E_INTERNAL, H5E_CANTFREE, FAIL, "failed to release hyperslab spans")
+ } /* end if */
- /* Release space for the hyperslab selection information */
- space->select.sel_info.hslab = H5FL_FREE(H5S_hyper_sel_t, space->select.sel_info.hslab);
+ /* Release space for the hyperslab selection information */
+ space->select.sel_info.hslab = H5FL_FREE(H5S_hyper_sel_t, space->select.sel_info.hslab);
+ } /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -3574,6 +3762,9 @@ H5S_hyper_add_span_element(H5S_t *space, unsigned rank, hsize_t *coords)
/* Reset "regular" hyperslab flag */
space->select.sel_info.hslab->diminfo_valid = FALSE;
+ /* Set unlim_dim */
+ space->select.sel_info.hslab->unlim_dim = -1;
+
/* Set # of elements in selection */
space->select.num_elem = 1;
} /* end if */
@@ -4283,6 +4474,9 @@ H5S_hyper_project_simple(const H5S_t *base_space, H5S_t *new_space, hsize_t *off
if(NULL == (new_space->select.sel_info.hslab = H5FL_MALLOC(H5S_hyper_sel_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab info")
+ /* Set unlim_dim */
+ new_space->select.sel_info.hslab->unlim_dim = -1;
+
/* Check for a "regular" hyperslab selection */
if(base_space->select.sel_info.hslab->diminfo_valid) {
unsigned base_space_dim; /* Current dimension in the base dataspace */
@@ -4833,7 +5027,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
/* Merge/add span 'a' with/to a_not_b list */
if(H5S_hyper_append_span(&last_a_not_b,a_not_b,span_a->low,span_a->high,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Advance span 'a', leave span 'b' */
H5S_hyper_recover_span(&recover_a,&span_a,span_a->next);
@@ -4848,7 +5042,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
/* Merge/add lower part of span 'a' with/to a_not_b list */
if(H5S_hyper_append_span(&last_a_not_b,a_not_b,span_a->low,span_b->low-1,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Check for overlaps between upper part of span 'a' and lower part of span 'b' */
@@ -4859,7 +5053,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(span_a->down==NULL) {
/* Merge/add overlapped part with/to a_and_b list */
if(H5S_hyper_append_span(&last_a_and_b,a_and_b,span_b->low,span_a->high,NULL,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
} /* end if */
/* If there are down spans, check for the overlap in them and add to each appropriate list */
else {
@@ -4876,7 +5070,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_a_not_b!=NULL) {
/* Merge/add overlapped part with/to a_not_b list */
if(H5S_hyper_append_span(&last_a_not_b,a_not_b,span_b->low,span_a->high,down_a_not_b,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_a_not_b);
@@ -4886,7 +5080,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_a_and_b!=NULL) {
/* Merge/add overlapped part with/to a_and_b list */
if(H5S_hyper_append_span(&last_a_and_b,a_and_b,span_b->low,span_a->high,down_a_and_b,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_a_and_b);
@@ -4896,7 +5090,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_b_not_a!=NULL) {
/* Merge/add overlapped part with/to b_not_a list */
if(H5S_hyper_append_span(&last_b_not_a,b_not_a,span_b->low,span_a->high,down_b_not_a,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_b_not_a);
@@ -4935,7 +5129,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
/* Merge/add lower part of span 'a' with/to a_not_b list */
if(H5S_hyper_append_span(&last_a_not_b,a_not_b,span_a->low,span_b->low-1,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Check for overlaps between middle part of span 'a' and span 'b' */
@@ -4946,7 +5140,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(span_a->down==NULL) {
/* Merge/add overlapped part with/to a_and_b list */
if(H5S_hyper_append_span(&last_a_and_b,a_and_b,span_b->low,span_b->high,NULL,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
} /* end if */
/* If there are down spans, check for the overlap in them and add to each appropriate list */
else {
@@ -4963,7 +5157,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_a_not_b!=NULL) {
/* Merge/add overlapped part with/to a_not_b list */
if(H5S_hyper_append_span(&last_a_not_b,a_not_b,span_b->low,span_b->high,down_a_not_b,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_a_not_b);
@@ -4973,7 +5167,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_a_and_b!=NULL) {
/* Merge/add overlapped part with/to a_and_b list */
if(H5S_hyper_append_span(&last_a_and_b,a_and_b,span_b->low,span_b->high,down_a_and_b,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_a_and_b);
@@ -4983,7 +5177,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_b_not_a!=NULL) {
/* Merge/add overlapped part with/to b_not_a list */
if(H5S_hyper_append_span(&last_b_not_a,b_not_a,span_b->low,span_b->high,down_b_not_a,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_b_not_a);
@@ -5014,7 +5208,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(span_a->low>span_b->low) {
/* Merge/add lower part of span 'b' with/to b_not_a list */
if(H5S_hyper_append_span(&last_b_not_a,b_not_a,span_b->low,span_a->low-1,span_b->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
} /* end if */
else {
/* Keep going, nothing to split off */
@@ -5029,7 +5223,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(span_a->down==NULL) {
/* Merge/add overlapped part with/to a_and_b list */
if(H5S_hyper_append_span(&last_a_and_b,a_and_b,span_a->low,span_a->high,NULL,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
} /* end if */
/* If there are down spans, check for the overlap in them and add to each appropriate list */
else {
@@ -5046,7 +5240,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_a_not_b!=NULL) {
/* Merge/add overlapped part with/to a_not_b list */
if(H5S_hyper_append_span(&last_a_not_b,a_not_b,span_a->low,span_a->high,down_a_not_b,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_a_not_b);
@@ -5056,7 +5250,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_a_and_b!=NULL) {
/* Merge/add overlapped part with/to a_and_b list */
if(H5S_hyper_append_span(&last_a_and_b,a_and_b,span_a->low,span_a->high,down_a_and_b,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_a_and_b);
@@ -5066,7 +5260,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_b_not_a!=NULL) {
/* Merge/add overlapped part with/to b_not_a list */
if(H5S_hyper_append_span(&last_b_not_a,b_not_a,span_a->low,span_a->high,down_b_not_a,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_b_not_a);
@@ -5106,7 +5300,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
/* Merge/add lower part of span 'b' with/to b_not_a list */
if(H5S_hyper_append_span(&last_b_not_a,b_not_a,span_b->low,span_a->low-1,span_b->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
} /* end if */
else {
/* Keep going, nothing to split off */
@@ -5121,7 +5315,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(span_a->down==NULL) {
/* Merge/add overlapped part with/to a_and_b list */
if(H5S_hyper_append_span(&last_a_and_b,a_and_b,span_a->low,span_b->high,NULL,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
} /* end if */
/* If there are down spans, check for the overlap in them and add to each appropriate list */
else {
@@ -5138,7 +5332,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_a_not_b!=NULL) {
/* Merge/add overlapped part with/to a_not_b list */
if(H5S_hyper_append_span(&last_a_not_b,a_not_b,span_a->low,span_b->high,down_a_not_b,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_a_not_b);
@@ -5148,7 +5342,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_a_and_b!=NULL) {
/* Merge/add overlapped part with/to a_and_b list */
if(H5S_hyper_append_span(&last_a_and_b,a_and_b,span_a->low,span_b->high,down_a_and_b,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_a_and_b);
@@ -5158,7 +5352,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
if(down_b_not_a!=NULL) {
/* Merge/add overlapped part with/to b_not_a list */
if(H5S_hyper_append_span(&last_b_not_a,b_not_a,span_a->low,span_b->high,down_b_not_a,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Release the down span tree generated */
H5S_hyper_free_span_info(down_b_not_a);
@@ -5187,7 +5381,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
/* Merge/add span 'b' with/to b_not_a list */
if(H5S_hyper_append_span(&last_b_not_a,b_not_a,span_b->low,span_b->high,span_b->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Advance span 'b', leave span 'a' */
H5S_hyper_recover_span(&recover_b,&span_b,span_b->next);
@@ -5201,7 +5395,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
/* Merge/add span 'a' with/to a_not_b list */
if(H5S_hyper_append_span(&last_a_not_b,a_not_b,span_a->low,span_a->high,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Advance to the next 'a' span */
H5S_hyper_recover_span(&recover_a,&span_a,span_a->next);
@@ -5214,7 +5408,7 @@ H5S_hyper_clip_spans (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
/* Merge/add span 'b' with/to b_not_a list */
if(H5S_hyper_append_span(&last_b_not_a,b_not_a,span_b->low,span_b->high,span_b->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
/* Advance to the next 'b' span */
H5S_hyper_recover_span(&recover_b,&span_b,span_b->next);
@@ -5296,7 +5490,7 @@ H5S_hyper_merge_spans_helper (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_inf
if(span_a->high<span_b->low) {
/* Merge/add span 'a' with/to the merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_a->low,span_a->high,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
/* Advance span 'a' */
H5S_hyper_recover_span(&recover_a,&span_a,span_a->next);
@@ -5311,19 +5505,19 @@ H5S_hyper_merge_spans_helper (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_inf
if(H5S_hyper_cmp_spans(span_a->down,span_b->down)==TRUE) {
/* Merge/add copy of span 'a' with/to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_a->low,span_a->high,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
} /* end if */
else {
/* Merge/add lower part of span 'a' with/to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_a->low,span_b->low-1,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
/* Get merged span tree for overlapped section */
tmp_spans=H5S_hyper_merge_spans_helper(span_a->down,span_b->down);
/* Merge/add overlapped section to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_b->low,span_a->high,tmp_spans,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
/* Release merged span tree for overlapped section */
H5S_hyper_free_span_info(tmp_spans);
@@ -5360,19 +5554,19 @@ H5S_hyper_merge_spans_helper (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_inf
if(H5S_hyper_cmp_spans(span_a->down,span_b->down)==TRUE) {
/* Merge/add copy of lower & middle parts of span 'a' to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_a->low,span_b->high,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
} /* end if */
else {
/* Merge/add lower part of span 'a' to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_a->low,span_b->low-1,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
/* Get merged span tree for overlapped section */
tmp_spans=H5S_hyper_merge_spans_helper(span_a->down,span_b->down);
/* Merge/add overlapped section to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_b->low,span_b->high,tmp_spans,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
/* Release merged span tree for overlapped section */
H5S_hyper_free_span_info(tmp_spans);
@@ -5400,14 +5594,14 @@ H5S_hyper_merge_spans_helper (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_inf
if(H5S_hyper_cmp_spans(span_a->down,span_b->down)==TRUE) {
/* Merge/add copy of lower & middle parts of span 'b' to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_b->low,span_a->high,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
} /* end if */
else {
/* Check if there is a lower part of span 'b' */
if(span_a->low>span_b->low) {
/* Merge/add lower part of span 'b' to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_b->low,span_a->low-1,span_b->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
} /* end if */
else {
/* No lower part of span 'b' , keep going... */
@@ -5418,7 +5612,7 @@ H5S_hyper_merge_spans_helper (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_inf
/* Merge/add overlapped section to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_a->low,span_a->high,tmp_spans,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
/* Release merged span tree for overlapped section */
H5S_hyper_free_span_info(tmp_spans);
@@ -5455,14 +5649,14 @@ H5S_hyper_merge_spans_helper (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_inf
if(H5S_hyper_cmp_spans(span_a->down,span_b->down)==TRUE) {
/* Merge/add copy of span 'b' to merged spans if so */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_b->low,span_b->high,span_b->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
} /* end if */
else {
/* Check if there is a lower part of span 'b' */
if(span_a->low>span_b->low) {
/* Merge/add lower part of span 'b' to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_b->low,span_a->low-1,span_b->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
} /* end if */
else {
/* No lower part of span 'b' , keep going... */
@@ -5473,7 +5667,7 @@ H5S_hyper_merge_spans_helper (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_inf
/* Merge/add overlapped section to merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_a->low,span_b->high,tmp_spans,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
/* Release merged span tree for overlapped section */
H5S_hyper_free_span_info(tmp_spans);
@@ -5499,7 +5693,7 @@ H5S_hyper_merge_spans_helper (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_inf
else {
/* Merge/add span 'b' with the merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_b->low,span_b->high,span_b->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
/* Advance span 'b' */
H5S_hyper_recover_span(&recover_b,&span_b,span_b->next);
@@ -5511,7 +5705,7 @@ H5S_hyper_merge_spans_helper (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_inf
while(span_a!=NULL) {
/* Merge/add all 'a' spans into the merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_a->low,span_a->high,span_a->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
/* Advance to next 'a' span, until all processed */
H5S_hyper_recover_span(&recover_a,&span_a,span_a->next);
@@ -5523,7 +5717,7 @@ H5S_hyper_merge_spans_helper (H5S_hyper_span_info_t *a_spans, H5S_hyper_span_inf
while(span_b!=NULL) {
/* Merge/add all 'b' spans into the merged spans */
if(H5S_hyper_append_span(&prev_span_merge,&merged_spans,span_b->low,span_b->high,span_b->down,NULL)==FAIL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab span")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, NULL, "can't allocate hyperslab span")
/* Advance to next 'b' span, until all processed */
H5S_hyper_recover_span(&recover_b,&span_b,span_b->next);
@@ -6029,6 +6223,15 @@ H5S_hyper_generate_spans(H5S_t *space)
/* Get the diminfo */
for(u=0; u<space->extent.rank; u++) {
+ /* Check for unlimited dimension and return error */
+ /* These should be able to be converted to assertions once everything
+ * that calls this function checks for unlimited selections first
+ * (especially the new hyperslab API) -NAF */
+ if(space->select.sel_info.hslab->opt_diminfo[u].count == H5S_UNLIMITED)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "can't generate spans with unlimited count")
+ if(space->select.sel_info.hslab->opt_diminfo[u].block == H5S_UNLIMITED)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "can't generate spans with unlimited block")
+
tmp_start[u]=space->select.sel_info.hslab->opt_diminfo[u].start;
tmp_stride[u]=space->select.sel_info.hslab->opt_diminfo[u].stride;
tmp_count[u]=space->select.sel_info.hslab->opt_diminfo[u].count;
@@ -6316,6 +6519,7 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
const hsize_t *opt_count; /* Optimized count information */
const hsize_t *opt_block; /* Optimized block information */
unsigned u; /* Counters */
+ int unlim_dim = -1; /* Unlimited dimension in selection, of -1 if none */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -6334,6 +6538,18 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
if(block==NULL)
block = _ones;
+ /* Check for unlimited dimension */
+ for(u = 0; u<space->extent.rank; u++)
+ if((count[u] == H5S_UNLIMITED) || (block[u] == H5S_UNLIMITED)) {
+ if(unlim_dim >= 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "cannot have more than one unlimited dimension in selection")
+ else {
+ if(count[u] == block[u] /* == H5S_UNLIMITED */)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "count and block cannot both be unlimited")
+ unlim_dim = (int)u;
+ } /* end else */
+ } /* end if */
+
/*
* Check new selection.
*/
@@ -6382,7 +6598,7 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
opt_block = int_block;
for(u=0; u<space->extent.rank; u++) {
/* contiguous hyperslabs have the block size equal to the stride */
- if(stride[u]==block[u]) {
+ if((stride[u] == block[u]) && (count[u] != H5S_UNLIMITED)) {
int_count[u]=1;
int_stride[u]=1;
if(block[u]==1)
@@ -6394,7 +6610,8 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
if(count[u]==1)
int_stride[u]=1;
else {
- HDassert(stride[u] > block[u]);
+ HDassert((stride[u] > block[u]) || ((stride[u] == block[u])
+ && (count[u] == H5S_UNLIMITED)));
int_stride[u]=stride[u];
} /* end else */
int_count[u]=count[u];
@@ -6403,6 +6620,32 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
} /* end for */
} /* end else */
+ /* Check for operating on unlimited selection */
+ if((H5S_GET_SELECT_TYPE(space) == H5S_SEL_HYPERSLABS)
+ && (space->select.sel_info.hslab->unlim_dim >= 0)
+ && (op != H5S_SELECT_SET))
+ {
+ /* Check for invalid operation */
+ if(unlim_dim >= 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "cannot modify unlimited selection with another unlimited selection")
+ if(!((op == H5S_SELECT_AND) || (op == H5S_SELECT_NOTA)))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "unsupported operation on unlimited selection")
+ HDassert(space->select.sel_info.hslab->diminfo_valid);
+
+ /* Clip unlimited selection to include new selection */
+ if(H5S_hyper_clip_unlim(space,
+ start[space->select.sel_info.hslab->unlim_dim]
+ + ((opt_count[space->select.sel_info.hslab->unlim_dim]
+ - (hsize_t)1)
+ * opt_stride[space->select.sel_info.hslab->unlim_dim])
+ + opt_block[space->select.sel_info.hslab->unlim_dim]) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "failed to clip unlimited selection")
+
+ /* If an empty space was returned it must be "none" */
+ HDassert((space->select.num_elem > (hsize_t)0)
+ || (space->select.type->type == H5S_SEL_NONE));
+ } /* end if */
+
/* Fixup operation for non-hyperslab selections */
switch(H5S_GET_SELECT_TYPE(space)) {
case H5S_SEL_NONE: /* No elements selected in dataspace */
@@ -6522,16 +6765,64 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
space->select.num_elem *= (opt_count[u] * opt_block[u]);
} /* end for */
+ /* Save unlim_dim */
+ space->select.sel_info.hslab->unlim_dim = unlim_dim;
+
/* Indicate that the dimension information is valid */
space->select.sel_info.hslab->diminfo_valid = TRUE;
/* Indicate that there's no slab information */
space->select.sel_info.hslab->span_lst = NULL;
+
+ /* Handle unlimited selections */
+ if(unlim_dim >= 0) {
+ /* Calculate num_elem_non_unlim */
+ space->select.sel_info.hslab->num_elem_non_unlim = (hsize_t)1;
+ for(u = 0; u < space->extent.rank; u++)
+ if((int)u != unlim_dim)
+ space->select.sel_info.hslab->num_elem_non_unlim *= (opt_count[u] * opt_block[u]);
+
+ /* Set num_elem */
+ if(space->select.num_elem != (hsize_t)0)
+ space->select.num_elem = H5S_UNLIMITED;
+ } /* end if */
} /* end if */
else if(op >= H5S_SELECT_OR && op <= H5S_SELECT_NOTA) {
/* Sanity check */
HDassert(H5S_GET_SELECT_TYPE(space) == H5S_SEL_HYPERSLABS);
+ /* Handle unlimited selections */
+ if(unlim_dim >= 0) {
+ hsize_t bounds_start[H5S_MAX_RANK];
+ hsize_t bounds_end[H5S_MAX_RANK];
+ hsize_t tmp_count = opt_count[unlim_dim];
+ hsize_t tmp_block = opt_block[unlim_dim];
+
+ /* Check for invalid operation */
+ if(space->select.sel_info.hslab->unlim_dim >= 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "cannot modify unlimited selection with another unlimited selection")
+ if(!((op == H5S_SELECT_AND) || (op == H5S_SELECT_NOTB)))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "unsupported operation with unlimited selection")
+
+ /* Get bounds of existing selection */
+ if(H5S_hyper_bounds(space, bounds_start, bounds_end) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds")
+
+ /* Patch count and block to remove unlimited and include the
+ * existing selection */
+ H5S__hyper_get_clip_diminfo(start[unlim_dim], opt_stride[unlim_dim], &tmp_count, &tmp_block, bounds_end[unlim_dim] + (hsize_t)1);
+ HDassert((tmp_count == 1) || (opt_count != _ones));
+ HDassert((tmp_block == 1) || (opt_block != _ones));
+ if(opt_count != _ones) {
+ HDassert(opt_count == int_count);
+ int_count[unlim_dim] = tmp_count;
+ } /* end if */
+ if(opt_block != _ones) {
+ HDassert(opt_block == int_block);
+ int_block[unlim_dim] = tmp_block;
+ } /* end if */
+ } /* end if */
+
/* Check if there's no hyperslab span information currently */
if(NULL == space->select.sel_info.hslab->span_lst)
if(H5S_hyper_generate_spans(space) < 0)
@@ -6878,6 +7169,9 @@ H5S_generate_hyperslab (H5S_t *space, H5S_seloper_t op,
/* Allocate space for the hyperslab selection information */
if((space->select.sel_info.hslab=H5FL_MALLOC(H5S_hyper_sel_t))==NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab info")
+
+ /* Set unlim_dim */
+ space->select.sel_info.hslab->unlim_dim = -1;
} /* end if */
/* Combine tmp_space (really space) & new_space, with the result in space */
@@ -6925,6 +7219,7 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
const hsize_t *opt_count; /* Optimized count information */
const hsize_t *opt_block; /* Optimized block information */
unsigned u; /* Counters */
+ int unlim_dim = -1; /* Unlimited dimension in selection, of -1 if none */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -6943,6 +7238,18 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
if(block==NULL)
block = _ones;
+ /* Check for unlimited dimension */
+ for(u = 0; u<space->extent.rank; u++)
+ if((count[u] == H5S_UNLIMITED) || (block[u] == H5S_UNLIMITED)) {
+ if(unlim_dim >= 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "cannot have more than one unlimited dimension in selection")
+ else {
+ if(count[u] == block[u] /* == H5S_UNLIMITED */)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "count and block cannot both be unlimited")
+ unlim_dim = (int)u;
+ } /* end else */
+ } /* end if */
+
/*
* Check new selection.
*/
@@ -6987,7 +7294,7 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
opt_block = int_block;
for(u=0; u<space->extent.rank; u++) {
/* contiguous hyperslabs have the block size equal to the stride */
- if(stride[u]==block[u]) {
+ if((stride[u] == block[u]) && (count[u] != H5S_UNLIMITED)) {
int_count[u]=1;
int_stride[u]=1;
if(block[u]==1)
@@ -6999,7 +7306,8 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
if(count[u]==1)
int_stride[u]=1;
else {
- HDassert(stride[u] > block[u]);
+ HDassert((stride[u] > block[u]) || ((stride[u] == block[u])
+ && (count[u] == H5S_UNLIMITED)));
int_stride[u]=stride[u];
} /* end else */
int_count[u]=count[u];
@@ -7008,6 +7316,32 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
} /* end for */
} /* end else */
+ /* Check for operating on unlimited selection */
+ if((H5S_GET_SELECT_TYPE(space) == H5S_SEL_HYPERSLABS)
+ && (space->select.sel_info.hslab->unlim_dim >= 0)
+ && (op != H5S_SELECT_SET))
+ {
+ /* Check for invalid operation */
+ if(unlim_dim >= 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "cannot modify unlimited selection with another unlimited selection")
+ if(!((op == H5S_SELECT_AND) || (op == H5S_SELECT_NOTA)))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "unsupported operation on unlimited selection")
+ HDassert(space->select.sel_info.hslab->diminfo_valid);
+
+ /* Clip unlimited selection to include new selection */
+ if(H5S_hyper_clip_unlim(space,
+ start[space->select.sel_info.hslab->unlim_dim]
+ + ((opt_count[space->select.sel_info.hslab->unlim_dim]
+ - (hsize_t)1)
+ * opt_stride[space->select.sel_info.hslab->unlim_dim])
+ + opt_block[space->select.sel_info.hslab->unlim_dim]) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "failed to clip unlimited selection")
+
+ /* If an empty space was returned it must be "none" */
+ HDassert((space->select.num_elem > (hsize_t)0)
+ || (space->select.type->type == H5S_SEL_NONE));
+ } /* end if */
+
/* Fixup operation for non-hyperslab selections */
switch(H5S_GET_SELECT_TYPE(space)) {
case H5S_SEL_NONE: /* No elements selected in dataspace */
@@ -7099,8 +7433,8 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't release hyperslab")
/* Allocate space for the hyperslab selection information */
- if((space->select.sel_info.hslab=H5FL_MALLOC(H5S_hyper_sel_t))==NULL)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab info")
+ if(NULL == (space->select.sel_info.hslab = H5FL_MALLOC(H5S_hyper_sel_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab info")
/* Save the diminfo */
space->select.num_elem=1;
@@ -7118,33 +7452,81 @@ H5S_select_hyperslab (H5S_t *space, H5S_seloper_t op,
space->select.num_elem*=(opt_count[u]*opt_block[u]);
} /* end for */
+ /* Save unlim_dim */
+ space->select.sel_info.hslab->unlim_dim = unlim_dim;
+
/* Indicate that the dimension information is valid */
- space->select.sel_info.hslab->diminfo_valid=TRUE;
+ space->select.sel_info.hslab->diminfo_valid = TRUE;
/* Indicate that there's no slab information */
- space->select.sel_info.hslab->span_lst=NULL;
+ space->select.sel_info.hslab->span_lst = NULL;
+
+ /* Handle unlimited selections */
+ if(unlim_dim >= 0) {
+ /* Calculate num_elem_non_unlim */
+ space->select.sel_info.hslab->num_elem_non_unlim = (hsize_t)1;
+ for(u = 0; u < space->extent.rank; u++)
+ if((int)u != unlim_dim)
+ space->select.sel_info.hslab->num_elem_non_unlim *= (opt_count[u] * opt_block[u]);
+
+ /* Set num_elem */
+ if(space->select.num_elem != (hsize_t)0)
+ space->select.num_elem = H5S_UNLIMITED;
+ } /* end if */
} /* end if */
else if(op>=H5S_SELECT_OR && op<=H5S_SELECT_NOTA) {
/* Sanity check */
HDassert(H5S_GET_SELECT_TYPE(space) == H5S_SEL_HYPERSLABS);
+ /* Handle unlimited selections */
+ if(unlim_dim >= 0) {
+ hsize_t bounds_start[H5S_MAX_RANK];
+ hsize_t bounds_end[H5S_MAX_RANK];
+ hsize_t tmp_count = opt_count[unlim_dim];
+ hsize_t tmp_block = opt_block[unlim_dim];
+
+ /* Check for invalid operation */
+ if(space->select.sel_info.hslab->unlim_dim >= 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "cannot modify unlimited selection with another unlimited selection")
+ if(!((op == H5S_SELECT_AND) || (op == H5S_SELECT_NOTB)))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "unsupported operation with unlimited selection")
+
+ /* Get bounds of existing selection */
+ if(H5S_hyper_bounds(space, bounds_start, bounds_end) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds")
+
+ /* Patch count and block to remove unlimited and include the
+ * existing selection */
+ H5S__hyper_get_clip_diminfo(start[unlim_dim], opt_stride[unlim_dim], &tmp_count, &tmp_block, bounds_end[unlim_dim] + (hsize_t)1);
+ HDassert((tmp_count == 1) || (opt_count != _ones));
+ HDassert((tmp_block == 1) || (opt_block != _ones));
+ if(opt_count != _ones) {
+ HDassert(opt_count == int_count);
+ int_count[unlim_dim] = tmp_count;
+ } /* end if */
+ if(opt_block != _ones) {
+ HDassert(opt_block == int_block);
+ int_block[unlim_dim] = tmp_block;
+ } /* end if */
+ } /* end if */
+
/* Check if there's no hyperslab span information currently */
- if(space->select.sel_info.hslab->span_lst==NULL)
- if(H5S_hyper_generate_spans(space)<0)
+ if(NULL == space->select.sel_info.hslab->span_lst)
+ if(H5S_hyper_generate_spans(space) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_UNINITIALIZED, FAIL, "dataspace does not have span tree")
+ /* Indicate that the regular dimensions are no longer valid */
+ space->select.sel_info.hslab->diminfo_valid = FALSE;
+
/* Add in the new hyperslab information */
if(H5S_generate_hyperslab (space, op, start, opt_stride, opt_count, opt_block)<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINSERT, FAIL, "can't generate hyperslabs")
-
- /* Indicate that the regular dimensions are no longer valid */
- space->select.sel_info.hslab->diminfo_valid=FALSE;
} /* end if */
else
HGOTO_ERROR(H5E_ARGS, H5E_UNSUPPORTED, FAIL, "invalid selection operation")
/* Set selection type */
- space->select.type=H5S_sel_hyper;
+ space->select.type = H5S_sel_hyper;
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -7333,6 +7715,9 @@ H5S_combine_select (H5S_t *space1, H5S_seloper_t op, H5S_t *space2)
if((new_space->select.sel_info.hslab=H5FL_CALLOC(H5S_hyper_sel_t))==NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "can't allocate hyperslab info")
+ /* Set unlim_dim */
+ new_space->select.sel_info.hslab->unlim_dim = -1;
+
/* Combine space1 & space2, with the result in new_space */
if(H5S_operate_hyperslab(new_space,space1->select.sel_info.hslab->span_lst,op,space2->select.sel_info.hslab->span_lst,FALSE,&span2_owned)<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, NULL, "can't clip hyperslab information")
@@ -7462,6 +7847,9 @@ H5S_select_select (H5S_t *space1, H5S_seloper_t op, H5S_t *space2)
if((space1->select.sel_info.hslab=H5FL_CALLOC(H5S_hyper_sel_t))==NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab info")
+ /* Set unlim_dim */
+ space1->select.sel_info.hslab->unlim_dim = -1;
+
/* Combine tmp_spans (from space1) & spans from space2, with the result in space1 */
if(H5S_operate_hyperslab(space1,tmp_spans,op,space2->select.sel_info.hslab->span_lst,FALSE,&span2_owned)<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't clip hyperslab information")
@@ -8734,6 +9122,7 @@ H5S_hyper_get_seq_list(const H5S_t *space, unsigned H5_ATTR_UNUSED flags, H5S_se
HDassert(nelem);
HDassert(off);
HDassert(len);
+ HDassert(space->select.sel_info.hslab->unlim_dim < 0);
/* Check for the special case of just one H5Sselect_hyperslab call made */
if(space->select.sel_info.hslab->diminfo_valid) {
@@ -8794,7 +9183,7 @@ H5S_hyper_get_seq_list(const H5S_t *space, unsigned H5_ATTR_UNUSED flags, H5S_se
/* Make certain that we don't write too many */
actual_elem = MIN3(leftover, (size_t)iter->elmt_left, maxelem);
- /* initialize row sizes for each dimension */
+ /* Initialize row sizes for each dimension */
elem_size = iter->elmt_size;
for(i = (int)fast_dim, acc = elem_size; i >= 0; i--) {
slab[i] = acc;
@@ -8863,6 +9252,1086 @@ H5S_hyper_get_seq_list(const H5S_t *space, unsigned H5_ATTR_UNUSED flags, H5S_se
/*--------------------------------------------------------------------------
NAME
+ H5S__hyper_project_intersection
+ PURPOSE
+ Projects the intersection of of the selections of src_space and
+ src_intersect_space within the selection of src_space as a selection
+ within the selection of dst_space
+ USAGE
+ herr_t H5S__hyper_project_intersection(src_space,dst_space,src_intersect_space,proj_space)
+ H5S_t *src_space; IN: Selection that is mapped to dst_space, and intersected with src_intersect_space
+ H5S_t *dst_space; IN: Selection that is mapped to src_space, and which contains the result
+ H5S_t *src_intersect_space; IN: Selection whose intersection with src_space is projected to dst_space to obtain the result
+ H5S_t *proj_space; OUT: Will contain the result (intersection of src_intersect_space and src_space projected from src_space to dst_space) after the operation
+ RETURNS
+ Non-negative on success/Negative on failure.
+ DESCRIPTION
+ Projects the intersection of of the selections of src_space and
+ src_intersect_space within the selection of src_space as a selection
+ within the selection of dst_space. The result is placed in the
+ selection of proj_space. Note src_space, dst_space, and
+ src_intersect_space do not need to use hyperslab selections, but they
+ cannot use point selections. The result is always a hyperslab
+ selection.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+herr_t
+H5S__hyper_project_intersection(const H5S_t *src_space, const H5S_t *dst_space,
+ const H5S_t *src_intersect_space, H5S_t *proj_space)
+{
+ hsize_t ss_off[H5S_PROJECT_INTERSECT_NSEQS]; /* Offset array for src_space */
+ size_t ss_len[H5S_PROJECT_INTERSECT_NSEQS]; /* Length array for src_space */
+ size_t ss_nseq; /* Number of sequences for src_space */
+ size_t ss_nelem; /* Number of elements for src_space */
+ size_t ss_i = (size_t)0; /* Index into offset/length arrays for src_space */
+ hbool_t advance_ss = FALSE; /* Whether to advance ss_i on the next iteration */
+ H5S_sel_iter_t ss_iter; /* Selection iterator for src_space */
+ hbool_t ss_iter_init = FALSE; /* Whether ss_iter is initialized */
+ hsize_t ss_sel_off = (hsize_t)0; /* Offset within src_space selection */
+ hsize_t ds_off[H5S_PROJECT_INTERSECT_NSEQS]; /* Offset array for dst_space */
+ size_t ds_len[H5S_PROJECT_INTERSECT_NSEQS]; /* Length array for dst_space */
+ size_t ds_nseq; /* Number of sequences for dst_space */
+ size_t ds_nelem; /* Number of elements for dst_space */
+ size_t ds_i = (size_t)0; /* Index into offset/length arrays for dst_space */
+ H5S_sel_iter_t ds_iter; /* Selection iterator for dst_space */
+ hbool_t ds_iter_init = FALSE; /* Whether ds_iter is initialized */
+ hsize_t ds_sel_off = (hsize_t)0; /* Offset within dst_space selection */
+ hsize_t sis_off[H5S_PROJECT_INTERSECT_NSEQS]; /* Offset array for src_intersect_space */
+ size_t sis_len[H5S_PROJECT_INTERSECT_NSEQS]; /* Length array for src_intersect_space */
+ size_t sis_nseq; /* Number of sequences for src_intersect_space */
+ size_t sis_nelem; /* Number of elements for src_intersect_space */
+ size_t sis_i = (size_t)0; /* Index into offset/length arrays for src_intersect_space */
+ hbool_t advance_sis = FALSE; /* Whether to advance sis_i on the next iteration */
+ H5S_sel_iter_t sis_iter; /* Selection iterator for src_intersect_space */
+ hbool_t sis_iter_init = FALSE; /* Whether sis_iter is initialized */
+ hsize_t int_sel_off; /* Offset within intersected selections (ss/sis and ds/ps) */
+ size_t int_len; /* Length of segment in intersected selections */
+ hsize_t proj_off; /* Segment offset in proj_space */
+ size_t proj_len; /* Segment length in proj_space */
+ size_t proj_len_rem; /* Remaining length in proj_space for segment */
+ hsize_t proj_down_dims[H5S_MAX_RANK]; /* "Down" dimensions in proj_space */
+ H5S_hyper_span_info_t *curr_span_tree[H5S_MAX_RANK]; /* Current span tree being built (in each dimension) */
+ H5S_hyper_span_t *prev_span[H5S_MAX_RANK]; /* Previous span in tree (in each dimension) */
+ hsize_t curr_span_up_dim[H5S_MAX_RANK]; /* "Up" dimensions for current span */
+ unsigned proj_rank; /* Rank of proj_space */
+ hsize_t low; /* Low value of span */
+ hsize_t high; /* High value of span */
+ size_t span_len; /* Length of span */
+ size_t nelem; /* Number of elements returned for get_seq_list op */
+ unsigned i; /* Local index variable */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_PACKAGE
+
+ /* Check parameters */
+ HDassert(src_space);
+ HDassert(dst_space);
+ HDassert(src_intersect_space);
+ HDassert(proj_space);
+
+ /* Assert that src_space and src_intersect_space have same extent and there
+ * are no point selections */
+ HDassert(H5S_GET_EXTENT_NDIMS(src_space)
+ == H5S_GET_EXTENT_NDIMS(src_intersect_space));
+ HDassert(!HDmemcmp(src_space->extent.size, src_intersect_space->extent.size,
+ (size_t)H5S_GET_EXTENT_NDIMS(src_space)
+ * sizeof(src_space->extent.size[0])));
+ HDassert(H5S_GET_SELECT_TYPE(src_space) != H5S_SEL_POINTS);
+ HDassert(H5S_GET_SELECT_TYPE(dst_space) != H5S_SEL_POINTS);
+ HDassert(H5S_GET_SELECT_TYPE(src_intersect_space) != H5S_SEL_POINTS);
+
+ /* Initialize prev_space, curr_span_tree, and curr_span_up_dim */
+ for(i = 0; i < H5S_MAX_RANK; i++) {
+ curr_span_tree[i] = NULL;
+ prev_span[i] = NULL;
+ curr_span_up_dim[i] = (hsize_t)0;
+ } /* end for */
+
+ /* Save rank of projected space */
+ proj_rank = proj_space->extent.rank;
+ HDassert(proj_rank > 0);
+
+ /* Get numbers of elements */
+ ss_nelem = (size_t)H5S_GET_SELECT_NPOINTS(src_space);
+ ds_nelem = (size_t)H5S_GET_SELECT_NPOINTS(dst_space);
+ sis_nelem = (size_t)H5S_GET_SELECT_NPOINTS(src_intersect_space);
+ HDassert(ss_nelem == ds_nelem);
+
+ /* Calculate proj_down_dims (note loop relies on unsigned i wrapping around)
+ */
+ if(H5VM_array_down(proj_rank, proj_space->extent.size, proj_down_dims) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "can't compute 'down' chunk size value")
+
+ /* Remove current selection from proj_space */
+ if(H5S_SELECT_RELEASE(proj_space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't release selection")
+
+ /* If any selections are empty, skip to the end so "none" is selected */
+ if((ss_nelem == 0) || (ds_nelem == 0) || (sis_nelem == 0))
+ goto loop_end;
+
+ /* Allocate space for the hyperslab selection information (note this sets
+ * diminfo_valid to FALSE, diminfo arrays to 0, and span list to NULL) */
+ if((proj_space->select.sel_info.hslab = H5FL_CALLOC(H5S_hyper_sel_t)) == NULL)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate hyperslab info")
+
+ /* Set selection type */
+ proj_space->select.type = H5S_sel_hyper;
+
+ /* Set unlim_dim */
+ proj_space->select.sel_info.hslab->unlim_dim = -1;
+
+ /* Initialize source space iterator */
+ if(H5S_select_iter_init(&ss_iter, src_space, (size_t)1) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator")
+ ss_iter_init = TRUE;
+
+ /* Get sequence list for source space */
+ if(H5S_SELECT_GET_SEQ_LIST(src_space, 0u, &ss_iter, H5S_PROJECT_INTERSECT_NSEQS, ss_nelem, &ss_nseq, &nelem, ss_off, ss_len) < 0)
+ HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, FAIL, "sequence length generation failed")
+ ss_nelem -= nelem;
+ HDassert(ss_nseq > 0);
+
+ /* Initialize destination space iterator */
+ if(H5S_select_iter_init(&ds_iter, dst_space, (size_t)1) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator")
+ ds_iter_init = TRUE;
+
+ /* Get sequence list for destination space */
+ if(H5S_SELECT_GET_SEQ_LIST(dst_space, 0u, &ds_iter, H5S_PROJECT_INTERSECT_NSEQS, ds_nelem, &ds_nseq, &nelem, ds_off, ds_len) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator")
+ ds_nelem -= nelem;
+ HDassert(ds_nseq > 0);
+
+ /* Initialize source intersect space iterator */
+ if(H5S_select_iter_init(&sis_iter, src_intersect_space, (size_t)1) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator")
+ sis_iter_init = TRUE;
+
+ /* Get sequence list for source intersect space */
+ if(H5S_SELECT_GET_SEQ_LIST(src_intersect_space, 0u, &sis_iter, H5S_PROJECT_INTERSECT_NSEQS, sis_nelem, &sis_nseq, &nelem, sis_off, sis_len) < 0)
+ HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, FAIL, "sequence length generation failed")
+ sis_nelem -= nelem;
+ HDassert(sis_nseq > 0);
+
+ /* Loop until we run out of sequences in either the source or source
+ * intersect space */
+ while(1) {
+ while(advance_ss || (ss_off[ss_i] + ss_len[ss_i] <= sis_off[sis_i])) {
+ /* Either we finished the current source sequence or the
+ * sequences do not intersect. Advance source space. */
+ ss_sel_off += (hsize_t)ss_len[ss_i];
+ if(++ss_i == ss_nseq) {
+ if(ss_nelem > 0) {
+ /* Try to grab more sequences from src_space */
+ if(H5S_SELECT_GET_SEQ_LIST(src_space, 0u, &ss_iter, H5S_PROJECT_INTERSECT_NSEQS, ss_nelem, &ss_nseq, &nelem, ss_off, ss_len) < 0)
+ HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, FAIL, "sequence length generation failed")
+ HDassert(ss_len[0] > 0);
+
+ /* Update ss_nelem */
+ HDassert(nelem > 0);
+ HDassert(nelem <= ss_nelem);
+ ss_nelem -= nelem;
+
+ /* Reset source space index */
+ ss_i = 0;
+ } /* end if */
+ else
+ /* There are no more sequences in src_space, so we can exit
+ * the loop. Use goto instead of break so we exit the outer
+ * loop. */
+ goto loop_end;
+ } /* end if */
+
+ /* Reset advance_ss */
+ advance_ss = FALSE;
+ } /* end if */
+ if(advance_sis
+ || (sis_off[sis_i] + sis_len[sis_i] <= ss_off[ss_i])) {
+ do {
+ /* Either we finished the current source intersect sequence or
+ * the sequences do not intersect. Advance source intersect
+ * space. */
+ if(++sis_i == sis_nseq) {
+ if(sis_nelem > 0) {
+ /* Try to grab more sequences from src_intersect_space
+ */
+ if(H5S_SELECT_GET_SEQ_LIST(src_intersect_space, 0u, &sis_iter, H5S_PROJECT_INTERSECT_NSEQS, sis_nelem, &sis_nseq, &nelem, sis_off, sis_len) < 0)
+ HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, FAIL, "sequence length generation failed")
+ HDassert(sis_len[0] > 0);
+
+ /* Update ss_nelem */
+ HDassert(nelem > 0);
+ HDassert(nelem <= sis_nelem);
+ sis_nelem -= nelem;
+
+ /* Reset source space index */
+ sis_i = 0;
+ } /* end if */
+ else
+ /* There are no more sequences in src_intersect_space,
+ * so we can exit the loop. Use goto instead of break
+ * so we exit the outer loop. */
+ goto loop_end;
+ } /* end if */
+ } while(sis_off[sis_i] + sis_len[sis_i] <= ss_off[ss_i]);
+
+ /* Reset advance_sis */
+ advance_sis = FALSE;
+ } /* end if */
+ else {
+ /* Sequences intersect, add intersection to projected space */
+ /* Calculate intersection sequence in terms of offset within source
+ * selection and advance any sequences we complete */
+ if(ss_off[ss_i] >= sis_off[sis_i])
+ int_sel_off = ss_sel_off;
+ else
+ int_sel_off = sis_off[sis_i] - ss_off[ss_i] + ss_sel_off;
+ if((ss_off[ss_i] + (hsize_t)ss_len[ss_i]) <= (sis_off[sis_i]
+ + (hsize_t)sis_len[sis_i])) {
+ int_len = (size_t)((hsize_t)ss_len[ss_i] + ss_sel_off - int_sel_off);
+ advance_ss = TRUE;
+ } /* end if */
+ else
+ int_len = (size_t)(sis_off[sis_i] + (hsize_t)sis_len[sis_i] - ss_off[ss_i] + ss_sel_off - int_sel_off);
+ if((ss_off[ss_i] + (hsize_t)ss_len[ss_i]) >= (sis_off[sis_i]
+ + (hsize_t)sis_len[sis_i]))
+ advance_sis = TRUE;
+
+ /* Project intersection sequence to destination selection */
+ while(int_len > (size_t)0) {
+ while(ds_sel_off + (hsize_t)ds_len[ds_i] <= int_sel_off) {
+ /* Intersection is not projected to this destination
+ * sequence, advance destination space */
+ ds_sel_off += (hsize_t)ds_len[ds_i];
+ if(++ds_i == ds_nseq) {
+ HDassert(ds_nelem > 0);
+
+ /* Try to grab more sequences from dst_space */
+ if(H5S_SELECT_GET_SEQ_LIST(dst_space, 0u, &ds_iter, H5S_PROJECT_INTERSECT_NSEQS, ds_nelem, &ds_nseq, &nelem, ds_off, ds_len) < 0)
+ HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, FAIL, "sequence length generation failed")
+ HDassert(ds_len[0] > 0);
+
+ /* Update ss_nelem */
+ HDassert(nelem > 0);
+ HDassert(nelem <= ds_nelem);
+ ds_nelem -= nelem;
+
+ /* Reset source space index */
+ ds_i = 0;
+ } /* end if */
+ } /* end while */
+
+ /* Add sequence to projected space */
+ HDassert(ds_sel_off <= int_sel_off);
+ proj_off = ds_off[ds_i] + int_sel_off - ds_sel_off;
+ proj_len = proj_len_rem = (size_t)MIN(int_len,
+ (size_t)(ds_sel_off + (hsize_t)ds_len[ds_i]
+ - int_sel_off));
+
+ /* Add to span tree */
+ while(proj_len_rem > (size_t)0) {
+ /* Check for more than one full row (in every dim) and
+ * append multiple spans at once? -NAF */
+ /* Append spans in higher dimensions if we're going ouside
+ * the plane of the span currently being built (i.e. it's
+ * finished being built) */
+ for(i = proj_rank - 1; ((i > 0)
+ && ((proj_off / proj_down_dims[i - 1])
+ != curr_span_up_dim[i - 1])); i--) {
+ if(curr_span_tree[i]) {
+ HDassert(prev_span[i]);
+
+ /* Append complete lower dimension span tree to
+ * current dimension */
+ low = curr_span_up_dim[i - 1] % proj_space->extent.size[i - 1];
+ if(H5S_hyper_append_span(&prev_span[i - 1], &curr_span_tree[i - 1], low, low, curr_span_tree[i], NULL) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
+
+ /* Reset lower dimension's span tree and previous
+ * span since we just committed it and will start
+ * over with a new one */
+ if(H5S_hyper_free_span_info(curr_span_tree[i]) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTFREE, FAIL, "can't free span info")
+ curr_span_tree[i] = NULL;
+ prev_span[i] = NULL;
+ } /* end if */
+
+ /* Update curr_span_up_dim */
+ curr_span_up_dim[i - 1] = proj_off / proj_down_dims[i - 1];
+ } /* end for */
+
+ /* Compute bounds for new span in lowest dimension */
+ low = proj_off % proj_space->extent.size[proj_rank - 1];
+ span_len = MIN(proj_len_rem,
+ (size_t)(proj_space->extent.size[proj_rank - 1]
+ - low));
+ HDassert(proj_len_rem >= span_len);
+ high = low + (hsize_t)span_len - (hsize_t)1;
+
+ /* Append span in lowest dimension */
+ if(H5S_hyper_append_span(&prev_span[proj_rank - 1], &curr_span_tree[proj_rank - 1], low, high, NULL, NULL) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
+
+ /* Update remaining offset and length */
+ proj_off += (hsize_t)span_len;
+ proj_len_rem -= span_len;
+ } /* end while */
+
+ /* Update intersection sequence */
+ int_sel_off += (hsize_t)proj_len;
+ int_len -= proj_len;
+ } /* end while */
+ } /* end else */
+ } /* end while */
+
+loop_end:
+ /* Add remaining spans to span tree */
+ for(i = proj_rank - 1; i > 0; i--)
+ if(curr_span_tree[i]) {
+ HDassert(prev_span[i]);
+
+ /* Append remaining span tree to higher dimension */
+ low = curr_span_up_dim[i - 1] % proj_space->extent.size[i - 1];
+ if(H5S_hyper_append_span(&prev_span[i - 1], &curr_span_tree[i - 1], low, low, curr_span_tree[i], NULL) < 0)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTAPPEND, FAIL, "can't allocate hyperslab span")
+
+ /* Reset span tree */
+ if(H5S_hyper_free_span_info(curr_span_tree[i]) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTFREE, FAIL, "can't free span info")
+ curr_span_tree[i] = NULL;
+ } /* end if */
+
+ /* Add span tree to proj_space */
+ if(curr_span_tree[0]) {
+ proj_space->select.sel_info.hslab->span_lst = curr_span_tree[0];
+ curr_span_tree[0] = NULL;
+
+ /* Set the number of elements in current selection */
+ proj_space->select.num_elem = H5S_hyper_spans_nelem(proj_space->select.sel_info.hslab->span_lst);
+
+ /* Attempt to rebuild "optimized" start/stride/count/block information.
+ * from resulting hyperslab span tree */
+ if(H5S_hyper_rebuild(proj_space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOUNT, FAIL, "can't rebuild hyperslab info")
+ } /* end if */
+ else
+ /* If we did not add anything to proj_space, select none instead */
+ if(H5S_select_none(proj_space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't convert selection")
+
+done:
+ /* Release source selection iterator */
+ if(ss_iter_init)
+ if(H5S_SELECT_ITER_RELEASE(&ss_iter) < 0)
+ HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator")
+
+ /* Release destination selection iterator */
+ if(ds_iter_init)
+ if(H5S_SELECT_ITER_RELEASE(&ds_iter) < 0)
+ HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator")
+
+ /* Release source intersect selection iterator */
+ if(sis_iter_init)
+ if(H5S_SELECT_ITER_RELEASE(&sis_iter) < 0)
+ HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator")
+
+ /* Cleanup on error */
+ if(ret_value < 0) {
+ /* Remove current selection from proj_space */
+ if(H5S_SELECT_RELEASE(proj_space) < 0)
+ HDONE_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't release selection")
+
+ /* Free span trees */
+ for(i = 0; i < proj_rank; i++)
+ if(curr_span_tree[i]) {
+ if(H5S_hyper_free_span_info(curr_span_tree[i]) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTFREE, FAIL, "can't free span info")
+ curr_span_tree[i] = NULL;
+ } /* end if */
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S__hyper_project_intersection() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S__hyper_subtract
+ PURPOSE
+ Subtract one hyperslab selection from another
+ USAGE
+ herr_t H5S__hyper_subtract(space,subtract_space)
+ H5S_t *space; IN/OUT: Selection to be operated on
+ H5S_t *subtract_space; IN: Selection that will be subtracted from space
+ RETURNS
+ Non-negative on success/Negative on failure.
+ DESCRIPTION
+ Removes any and all portions of space that are also present in
+ subtract_space. In essence, performs an A_NOT_B operation with the
+ two selections.
+
+ Note this function basically duplicates a subset of the functionality
+ of H5S_select_select(). It should probably be removed when that
+ function is enabled.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+herr_t
+H5S__hyper_subtract(H5S_t *space, H5S_t *subtract_space)
+{
+ H5S_hyper_span_info_t *a_not_b = NULL; /* Span tree for hyperslab spans in old span tree and not in new span tree */
+ H5S_hyper_span_info_t *a_and_b = NULL; /* Span tree for hyperslab spans in both old and new span trees */
+ H5S_hyper_span_info_t *b_not_a = NULL; /* Span tree for hyperslab spans in new span tree and not in old span tree */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+ /* Check args */
+ HDassert(space);
+ HDassert(subtract_space);
+
+ /* Check that the space selections both have span trees */
+ if(space->select.sel_info.hslab->span_lst == NULL)
+ if(H5S_hyper_generate_spans(space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNINITIALIZED, FAIL, "dataspace does not have span tree")
+ if(subtract_space->select.sel_info.hslab->span_lst == NULL)
+ if(H5S_hyper_generate_spans(subtract_space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNINITIALIZED, FAIL, "dataspace does not have span tree")
+
+ /* Generate lists of spans which overlap and don't overlap */
+ if(H5S_hyper_clip_spans(space->select.sel_info.hslab->span_lst, subtract_space->select.sel_info.hslab->span_lst, &a_not_b, &a_and_b, &b_not_a)<0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't clip hyperslab information")
+
+ /* Reset the other dataspace selection information */
+ if(H5S_SELECT_RELEASE(space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't release selection")
+
+ /* Allocate space for the hyperslab selection information */
+ if((space->select.sel_info.hslab = H5FL_CALLOC(H5S_hyper_sel_t)) == NULL)
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate hyperslab info")
+
+ /* Set unlim_dim */
+ space->select.sel_info.hslab->unlim_dim = -1;
+
+ /* Check for anything returned in a_not_b */
+ if(a_not_b) {
+ /* Update spans in space */
+ space->select.sel_info.hslab->span_lst = a_not_b;
+ a_not_b = NULL;
+
+ /* Update number of elements */
+ space->select.num_elem = H5S_hyper_spans_nelem(space->select.sel_info.hslab->span_lst);
+
+ /* Attempt to rebuild "optimized" start/stride/count/block information.
+ * from resulting hyperslab span tree */
+ if(H5S_hyper_rebuild(space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOUNT, FAIL, "can't rebuild hyperslab info")
+ } /* end if */
+ else {
+ H5S_hyper_span_info_t *spans; /* Empty hyperslab span tree */
+
+ /* Set number of elements */
+ space->select.num_elem = 0;
+
+ /* Allocate a span info node */
+ if(NULL == (spans = H5FL_MALLOC(H5S_hyper_span_info_t)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate hyperslab span")
+
+ /* Set the reference count */
+ spans->count = 1;
+
+ /* Reset the scratch pad space */
+ spans->scratch = 0;
+
+ /* Set to empty tree */
+ spans->head = NULL;
+
+ /* Set pointer to empty span tree */
+ space->select.sel_info.hslab->span_lst = spans;
+ } /* end if */
+
+done:
+ /* Free span trees */
+ if(a_and_b)
+ H5S_hyper_free_span_info(a_and_b);
+ if(b_not_a)
+ H5S_hyper_free_span_info(b_not_a);
+ if(a_not_b) {
+ HDassert(ret_value < 0);
+ H5S_hyper_free_span_info(b_not_a);
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S__hyper_subtract() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S__hyper_get_clip_diminfo
+ PURPOSE
+ Calculates the count and block required to clip the specified
+ unlimited dimension to include clip_size. The returned selection may
+ extent beyond clip_size.
+ USAGE
+ void H5S__hyper_get_clip_diminfo(start,stride,count,block,clip_size)
+ hsize_t start; IN: Start of hyperslab in unlimited dimension
+ hsize_t stride; IN: Stride of hyperslab in unlimited dimension
+ hsize_t *count; IN/OUT: Count of hyperslab in unlimited dimension
+ hsize_t *block; IN/OUT: Block of hyperslab in unlimited dimension
+ hsize_t clip_size; IN: Extent that hyperslab will be clipped to
+ RETURNS
+ Non-negative on success/Negative on failure.
+ DESCRIPTION
+ This function recalculates the internal description of the hyperslab
+ to make the unlimited dimension extend to the specified extent.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+void
+H5S__hyper_get_clip_diminfo(hsize_t start, hsize_t stride, hsize_t *count,
+ hsize_t *block, hsize_t clip_size)
+{
+ FUNC_ENTER_PACKAGE_NOERR
+
+ /* Check for selection outside clip size */
+ if(start >= clip_size) {
+ if(*block == H5S_UNLIMITED)
+ *block = 0;
+ else
+ *count = 0;
+ } /* end if */
+ /* Check for single block in unlimited dimension */
+ else if((*block == H5S_UNLIMITED) || (*block == stride)) {
+ /* Calculate actual block size for this clip size */
+ *block = clip_size - start;
+ *count = (hsize_t)1;
+ } /* end if */
+ else {
+ HDassert(*count == H5S_UNLIMITED);
+
+ /* Calculate initial count (last block may be partial) */
+ *count = (clip_size - start + stride - (hsize_t)1) / stride;
+ HDassert(*count > (hsize_t)0);
+ } /* end else */
+
+ FUNC_LEAVE_NOAPI_VOID
+} /* end H5S_hyper_get_clip_diminfo() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S_hyper_clip_unlim
+ PURPOSE
+ Clips the unlimited dimension of the hyperslab selection to the
+ specified size
+ USAGE
+ void H5S_hyper_clip_unlim(space,clip_size)
+ H5S_t *space, IN/OUT: Unlimited space to clip
+ hsize_t clip_size; IN: Extent that hyperslab will be clipped to
+ RETURNS
+ Non-negative on success/Negative on failure.
+ DESCRIPTION
+ This function changes the unlimited selection into a limited selection
+ with the extent of the formerly unlimited dimension specified by
+ * clip_size.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ Note this function does not take the offset into account.
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+herr_t
+H5S_hyper_clip_unlim(H5S_t *space, hsize_t clip_size)
+{
+ H5S_hyper_sel_t *hslab; /* Convenience pointer to hyperslab info */
+ hsize_t orig_count; /* Original count in unlimited dimension */
+ int orig_unlim_dim; /* Original unliminted dimension */
+ H5S_hyper_dim_t *diminfo; /* Convenience pointer to opt_diminfo in unlimited dimension */
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Check parameters */
+ HDassert(space);
+ hslab = space->select.sel_info.hslab;
+ HDassert(hslab);
+ HDassert(hslab->unlim_dim >= 0);
+ HDassert(!hslab->span_lst);
+
+ /* Save original unlimited dimension */
+ orig_unlim_dim = hslab->unlim_dim;
+
+ diminfo = &hslab->opt_diminfo[orig_unlim_dim];
+
+ /* Save original count in unlimited dimension */
+ orig_count = diminfo->count;
+
+ /* Get initial diminfo */
+ H5S__hyper_get_clip_diminfo(diminfo->start, diminfo->stride, &diminfo->count, &diminfo->block, clip_size);
+
+ /* Selection is no longer unlimited */
+ space->select.sel_info.hslab->unlim_dim = -1;
+
+ /* Check for nothing returned */
+ if((diminfo->block == 0) || (diminfo->count == 0)) {
+ /* Convert to "none" selection */
+ if(H5S_select_none(space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't convert selection")
+ } /* end if */
+ /* Check for single block in unlimited dimension */
+ else if(orig_count == (hsize_t)1) {
+ /* Calculate number of elements */
+ space->select.num_elem = diminfo->block * hslab->num_elem_non_unlim;
+
+ /* Mark that opt_diminfo is valid */
+ hslab->diminfo_valid = TRUE;
+ } /* end if */
+ else {
+ /* Calculate number of elements */
+ space->select.num_elem = diminfo->count * diminfo->block
+ * hslab->num_elem_non_unlim;
+
+ /* Check if last block is partial. If superset is set, just keep the
+ * last block complete to speed computation. */
+ HDassert(clip_size > diminfo->start);
+ if(((diminfo->stride * (diminfo->count - (hsize_t)1)) + diminfo->block)
+ > (clip_size - diminfo->start)) {
+ hsize_t start[H5S_MAX_RANK];
+ hsize_t block[H5S_MAX_RANK];
+ unsigned i;
+
+ /* Last block is partial, need to construct compound selection */
+ /* Fill start with zeros */
+ HDmemset(start, 0, sizeof(start));
+
+ /* Set block to clip_size in unlimited dimension, H5S_MAX_SIZE in
+ * others so only unlimited dimension is clipped */
+ for(i = 0; i < space->extent.rank; i++)
+ if((int)i == orig_unlim_dim)
+ block[i] = clip_size;
+ else
+ block[i] = H5S_MAX_SIZE;
+
+ /* Generate span tree in selection */
+ if(!hslab->span_lst)
+ if(H5S_hyper_generate_spans(space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to generate span tree")
+
+ /* Indicate that the regular dimensions are no longer valid */
+ hslab->diminfo_valid = FALSE;
+
+ /* "And" selection with calculated block to perform clip operation
+ */
+ if(H5S_generate_hyperslab(space, H5S_SELECT_AND, start, _ones, _ones, block) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINSERT, FAIL, "can't generate hyperslabs")
+ } /* end if */
+ else
+ /* Last block is complete, simply mark that opt_diminfo is valid */
+ hslab->diminfo_valid = TRUE;
+ } /* end else */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S_hyper_clip_unlim() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S__hyper_get_clip_extent_real
+ PURPOSE
+ Gets the extent a space should be clipped to in order to contain the
+ specified number of slices in the unlimited dimension
+ USAGE
+ hsize_t H5S__hyper_get_clip_extent_real(clip_space,num_slices,incl_trail)
+ const H5S_t *clip_space, IN: Space that clip size will be calculated based on
+ hsize_t num_slizes, IN: Number of slices clip_space should contain when clipped
+ hbool_t incl_trail; IN: Whether to include trailing unselected space
+ RETURNS
+ Clip extent to match num_slices (never fails)
+ DESCRIPTION
+ Calculates and returns the extent that clip_space should be clipped to
+ (via H5S_hyper_clip_unlim) in order for it to contain num_slices
+ slices in the unlimited dimension. If the clipped selection would end
+ immediately before a section of unselected space (i.e. at the end of a
+ block), then if incl_trail is TRUE, the returned clip extent is
+ selected to include that trailing "blank" space, otherwise it is
+ selected to end at the end before the blank space.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ Note this assumes the offset has been normalized.
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static hsize_t
+H5S__hyper_get_clip_extent_real(const H5S_t *clip_space, hsize_t num_slices,
+ hbool_t incl_trail)
+{
+ const H5S_hyper_dim_t *diminfo; /* Convenience pointer to opt_unlim_diminfo in unlimited dimension */
+ hsize_t count;
+ hsize_t rem_slices;
+ hsize_t ret_value; /* Return value */
+
+ FUNC_ENTER_STATIC_NOERR
+
+ /* Check parameters */
+ HDassert(clip_space);
+ HDassert(clip_space->select.sel_info.hslab);
+ HDassert(clip_space->select.sel_info.hslab->unlim_dim >= 0);
+
+ diminfo = &clip_space->select.sel_info.hslab->opt_diminfo[clip_space->select.sel_info.hslab->unlim_dim];
+
+ if(num_slices == 0)
+ ret_value = incl_trail ? diminfo->start : 0;
+ else if((diminfo->block == H5S_UNLIMITED)
+ || (diminfo->block == diminfo->stride))
+ /* Unlimited block, just set the extent large enough for the block size
+ * to match num_slices */
+ ret_value = diminfo->start + num_slices;
+ else {
+ /* Unlimited count, need to match extent so a block (possibly) gets cut
+ * off so the number of slices matches num_slices */
+ HDassert(diminfo->count == H5S_UNLIMITED);
+
+ /* Calculate number of complete blocks in clip_space */
+ count = num_slices / diminfo->block;
+
+ /* Calculate slices remaining */
+ rem_slices = num_slices - (count * diminfo->block);
+
+ if(rem_slices > 0)
+ /* Must end extent in middle of partial block (or beginning of empty
+ * block if include_trailing_space and rem_slices == 0) */
+ ret_value = diminfo->start + (count * diminfo->stride) + rem_slices;
+ else {
+ if(incl_trail)
+ /* End extent just before first missing block */
+ ret_value = diminfo->start + (count * diminfo->stride);
+ else
+ /* End extent at end of last block */
+ ret_value = diminfo->start + ((count - (hsize_t)1)
+ * diminfo->stride) + diminfo->block;
+ } /* end else */
+ } /* end else */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S__hyper_get_clip_extent_real() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S_hyper_get_clip_extent
+ PURPOSE
+ Gets the extent a space should be clipped to in order to contain the
+ same number of elements as another space
+ USAGE
+ hsize_t H5S__hyper_get_clip_extent(clip_space,match_space,incl_trail)
+ const H5S_t *clip_space, IN: Space that clip size will be calculated based on
+ const H5S_t *match_space, IN: Space containing the same number of elements as clip_space should after clipping
+ hbool_t incl_trail; IN: Whether to include trailing unselected space
+ RETURNS
+ Calculated clip extent (never fails)
+ DESCRIPTION
+ Calculates and returns the extent that clip_space should be clipped to
+ (via H5S_hyper_clip_unlim) in order for it to contain the same number
+ of elements as match_space. If the clipped selection would end
+ immediately before a section of unselected space (i.e. at the end of a
+ block), then if incl_trail is TRUE, the returned clip extent is
+ selected to include that trailing "blank" space, otherwise it is
+ selected to end at the end before the blank space.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ Note this assumes the offset has been normalized.
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+hsize_t
+H5S_hyper_get_clip_extent(const H5S_t *clip_space, const H5S_t *match_space,
+ hbool_t incl_trail)
+{
+ hsize_t num_slices; /* Number of slices in unlimited dimension */
+ hsize_t ret_value; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOERR
+
+ /* Check parameters */
+ HDassert(clip_space);
+ HDassert(match_space);
+ HDassert(clip_space->select.sel_info.hslab->unlim_dim >= 0);
+
+ /* Check for "none" match space */
+ if(match_space->select.type->type == H5S_SEL_NONE)
+ num_slices = (hsize_t)0;
+ else {
+ HDassert(match_space->select.type->type == H5S_SEL_HYPERSLABS);
+ HDassert(match_space->select.sel_info.hslab);
+
+ /* Calculate number of slices */
+ num_slices = match_space->select.num_elem
+ / clip_space->select.sel_info.hslab->num_elem_non_unlim;
+ HDassert((match_space->select.num_elem
+ % clip_space->select.sel_info.hslab->num_elem_non_unlim) == 0);
+ } /* end else */
+
+ /* Call "real" get_clip_extent function */
+ ret_value = H5S__hyper_get_clip_extent_real(clip_space, num_slices, incl_trail);
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S_hyper_get_clip_extent() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S_hyper_get_clip_extent_match
+ PURPOSE
+ Gets the extent a space should be clipped to in order to contain the
+ same number of elements as another unlimited space that has been
+ clipped to a different extent
+ USAGE
+ hsize_t H5S__hyper_get_clip_extent_match(clip_space,match_space,match_clip_size,incl_trail)
+ const H5S_t *clip_space, IN: Space that clip size will be calculated based on
+ const H5S_t *match_space, IN: Space that, after being clipped to match_clip_size, contains the same number of elements as clip_space should after clipping
+ hsize_t match_clip_size, IN: Extent match_space would be clipped to to match the number of elements in clip_space
+ hbool_t incl_trail; IN: Whether to include trailing unselected space
+ RETURNS
+ Calculated clip extent (never fails)
+ DESCRIPTION
+ Calculates and returns the extent that clip_space should be clipped to
+ (via H5S_hyper_clip_unlim) in order for it to contain the same number
+ of elements as match_space would have after being clipped to
+ match_clip_size. If the clipped selection would end immediately
+ before a section of unselected space (i.e. at the end of a block),
+ then if incl_trail is TRUE, the returned clip extent is selected to
+ include that trailing "blank" space, otherwise it is selected to end
+ at the end before the blank space.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ Note this assumes the offset has been normalized.
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+hsize_t
+H5S_hyper_get_clip_extent_match(const H5S_t *clip_space,
+ const H5S_t *match_space, hsize_t match_clip_size, hbool_t incl_trail)
+{
+ const H5S_hyper_dim_t *match_diminfo; /* Convenience pointer to opt_unlim_diminfo in unlimited dimension in match_space */
+ hsize_t count; /* Temporary count */
+ hsize_t block; /* Temporary block */
+ hsize_t num_slices; /* Number of slices in unlimited dimension */
+ hsize_t ret_value; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOERR
+
+ /* Check parameters */
+ HDassert(clip_space);
+ HDassert(match_space);
+ HDassert(clip_space->select.sel_info.hslab);
+ HDassert(match_space->select.sel_info.hslab);
+ HDassert(clip_space->select.sel_info.hslab->unlim_dim >= 0);
+ HDassert(match_space->select.sel_info.hslab->unlim_dim >= 0);
+ HDassert(clip_space->select.sel_info.hslab->num_elem_non_unlim
+ == match_space->select.sel_info.hslab->num_elem_non_unlim);
+
+ match_diminfo = &match_space->select.sel_info.hslab->opt_diminfo[match_space->select.sel_info.hslab->unlim_dim];
+
+ /* Get initial count and block */
+ count = match_diminfo->count;
+ block = match_diminfo->block;
+ H5S__hyper_get_clip_diminfo(match_diminfo->start, match_diminfo->stride, &count, &block, match_clip_size);
+
+ /* Calculate number of slices */
+ /* Check for nothing returned */
+ if((block == 0) || (count == 0))
+ num_slices = (hsize_t)0;
+ /* Check for single block in unlimited dimension */
+ else if(count == (hsize_t)1)
+ num_slices = block;
+ else {
+ /* Calculate initial num_slices */
+ num_slices = block * count;
+
+ /* Check for partial last block */
+ HDassert(match_clip_size >= match_diminfo->start);
+ if(((match_diminfo->stride * (count - (hsize_t)1)) + block)
+ > (match_clip_size - match_diminfo->start)) {
+ /* Subtract slices missing from last block */
+ HDassert((((match_diminfo->stride * (count - (hsize_t)1)) + block)
+ - (match_clip_size - match_diminfo->start)) < num_slices);
+ num_slices -= ((match_diminfo->stride * (count - (hsize_t)1))
+ + block) - (match_clip_size - match_diminfo->start);
+ } /* end if */
+ } /* end else */
+
+ /* Call "real" get_clip_extent function */
+ ret_value = H5S__hyper_get_clip_extent_real(clip_space, num_slices, incl_trail);
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S_hyper_get_clip_extent_match() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S_hyper_get_unlim_block
+ PURPOSE
+ Get the nth block in the unlimited dimension
+ USAGE
+ H5S_t *H5S_hyper_get_unlim_block(space,block_index)
+ const H5S_t *space, IN: Space with unlimited selection
+ hsize_t block_index, IN: Index of block to return in unlimited dimension
+ hbool_t incl_trail; IN: Whether to include trailing unselected space
+ RETURNS
+ New space on success/NULL on failure.
+ DESCRIPTION
+ Returns a space containing only the block_indexth block in the
+ unlimited dimension on space. All blocks in all other dimensions are
+ preserved.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ Note this assumes the offset has been normalized.
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+H5S_t *
+H5S_hyper_get_unlim_block(const H5S_t *space, hsize_t block_index)
+{
+ H5S_hyper_sel_t *hslab; /* Convenience pointer to hyperslab info */
+ H5S_t *space_out = NULL;
+ hsize_t start[H5S_MAX_RANK];
+ hsize_t stride[H5S_MAX_RANK];
+ hsize_t count[H5S_MAX_RANK];
+ hsize_t block[H5S_MAX_RANK];
+ unsigned i;
+ H5S_t *ret_value = NULL;
+
+ FUNC_ENTER_NOAPI(NULL)
+
+ /* Check parameters */
+ HDassert(space);
+ hslab = space->select.sel_info.hslab;
+ HDassert(hslab);
+ HDassert(hslab->unlim_dim >= 0);
+ HDassert(hslab->opt_diminfo[hslab->unlim_dim].count == H5S_UNLIMITED);
+
+ /* Set start to select block_indexth block in unlimited dimension and set
+ * count to 1 in that dimension to only select that block. Copy all other
+ * diminfo parameters. */
+ for(i = 0; i < space->extent.rank; i++) {
+ if((int)i == hslab->unlim_dim){
+ start[i] = hslab->opt_diminfo[i].start + (block_index
+ * hslab->opt_diminfo[i].stride);
+ count[i] = (hsize_t)1;
+ } /* end if */
+ else {
+ start[i] = hslab->opt_diminfo[i].start;
+ count[i] = hslab->opt_diminfo[i].count;
+ } /* end else */
+ stride[i] = hslab->opt_diminfo[i].stride;
+ block[i] = hslab->opt_diminfo[i].block;
+ } /* end for */
+
+ /* Create output space, copy extent */
+ if(NULL == (space_out = H5S_create(H5S_SIMPLE)))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, NULL, "unable to create output dataspace")
+ if(H5S_extent_copy_real(&space_out->extent, &space->extent, TRUE) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, NULL, "unable to copy destination space extent")
+
+ /* Set offset to zeros */
+ (void)HDmemset(space_out->select.offset, 0, (size_t)space_out->extent.rank * sizeof(space_out->select.offset[0]));
+ space_out->select.offset_changed = FALSE;
+
+ /* Select block as defined by start/stride/count/block computed above */
+ if(H5S_select_hyperslab(space_out, H5S_SELECT_SET, start, stride, count, block) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, NULL, "can't select hyperslab")
+
+ /* Set return value */
+ ret_value = space_out;
+
+done:
+ /* Free space on error */
+ if(!ret_value)
+ if(space_out && H5S_close(space_out) < 0)
+ HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, NULL, "unable to release dataspace")
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S_hyper_get_unlim_block */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S_hyper_get_first_inc_block
+ PURPOSE
+ Get the index of the first incomplete block in the specified extent
+ USAGE
+ hsize_t H5S_hyper_get_first_inc_block(space,clip_size,partial)
+ const H5S_t *space, IN: Space with unlimited selection
+ hsize_t clip_size, IN: Extent space would be clipped to
+ hbool_t *partial; OUT: Whether the ret_valueth block (first incomplete block) is partial
+ RETURNS
+ Index of first incomplete block in clip_size (never fails).
+ DESCRIPTION
+ Calculates and returns the index (as would be passed to
+ H5S_hyper_get_unlim_block()) of the first block in the unlimited
+ dimension of space which would be incomplete or missing when space is
+ clipped to clip_size. partial is set to TRUE if the first incomplete
+ block is partial, and FALSE if the first incomplete block is missing.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ Note this assumes the offset has been normalized.
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+hsize_t
+H5S_hyper_get_first_inc_block(const H5S_t *space, hsize_t clip_size,
+ hbool_t *partial)
+{
+ H5S_hyper_sel_t *hslab; /* Convenience pointer to hyperslab info */
+ H5S_hyper_dim_t *diminfo; /* Convenience pointer to opt_diminfo in unlimited dimension */
+ hsize_t ret_value;
+
+ FUNC_ENTER_NOAPI_NOERR
+
+ /* Check parameters */
+ HDassert(space);
+ hslab = space->select.sel_info.hslab;
+ HDassert(hslab);
+ HDassert(hslab->unlim_dim >= 0);
+ HDassert(hslab->opt_diminfo[hslab->unlim_dim].count == H5S_UNLIMITED);
+
+ diminfo = &hslab->opt_diminfo[hslab->unlim_dim];
+
+ /* Check for selection outside of clip_size */
+ if(diminfo->start >= clip_size) {
+ ret_value = 0;
+ if(partial)
+ partial = FALSE;
+ } /* end if */
+ else {
+ /* Calculate index of first incomplete block */
+ ret_value = (clip_size - diminfo->start + diminfo->stride
+ - diminfo->block) / diminfo->stride;
+
+ if(partial) {
+ /* Check for partial block */
+ if((diminfo->stride * ret_value) < (clip_size - diminfo->start))
+ *partial = TRUE;
+ else
+ *partial = FALSE;
+ } /* end if */
+ } /* end else */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5S_hyper_get_first_inc_block */
+
+
+/*--------------------------------------------------------------------------
+ NAME
H5Sis_regular_hyperslab
PURPOSE
Determine if a hyperslab selection is regular
diff --git a/src/H5Snone.c b/src/H5Snone.c
index a67880e..23433a1 100644
--- a/src/H5Snone.c
+++ b/src/H5Snone.c
@@ -39,11 +39,14 @@ static herr_t H5S_none_get_seq_list(const H5S_t *space, unsigned flags,
size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len);
static herr_t H5S_none_release(H5S_t *space);
static htri_t H5S_none_is_valid(const H5S_t *space);
-static hssize_t H5S_none_serial_size(const H5S_t *space);
-static herr_t H5S_none_serialize(const H5S_t *space, uint8_t **p);
-static herr_t H5S_none_deserialize(H5S_t *space, const uint8_t **p);
+static hssize_t H5S_none_serial_size(const H5F_t *f, const H5S_t *space);
+static herr_t H5S_none_serialize(const H5F_t *f, const H5S_t *space,
+ uint8_t **p);
+static herr_t H5S_none_deserialize(const H5F_t *f, H5S_t *space,
+ uint32_t version, uint8_t flags, const uint8_t **p);
static herr_t H5S_none_bounds(const H5S_t *space, hsize_t *start, hsize_t *end);
static herr_t H5S_none_offset(const H5S_t *space, hsize_t *off);
+static int H5S_none_unlim_dim(const H5S_t *space);
static htri_t H5S_none_is_contiguous(const H5S_t *space);
static htri_t H5S_none_is_single(const H5S_t *space);
static htri_t H5S_none_is_regular(const H5S_t *space);
@@ -75,6 +78,8 @@ const H5S_select_class_t H5S_sel_none[1] = {{
H5S_none_deserialize,
H5S_none_bounds,
H5S_none_offset,
+ H5S_none_unlim_dim,
+ NULL,
H5S_none_is_contiguous,
H5S_none_is_single,
H5S_none_is_regular,
@@ -431,8 +436,9 @@ H5S_none_is_valid(const H5S_t H5_ATTR_UNUSED *space)
Determine the number of bytes needed to store the serialized "none"
selection information.
USAGE
- hssize_t H5S_none_serial_size(space)
- H5S_t *space; IN: Dataspace pointer to query
+ hssize_t H5S_none_serial_size(f, space)
+ H5F_t *f IN: File pointer
+ H5S_t *space; IN: Dataspace pointer to query
RETURNS
The number of bytes required on success, negative on an error.
DESCRIPTION
@@ -444,7 +450,8 @@ H5S_none_is_valid(const H5S_t H5_ATTR_UNUSED *space)
REVISION LOG
--------------------------------------------------------------------------*/
static hssize_t
-H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space)
+H5S_none_serial_size(const H5F_t H5_ATTR_UNUSED *f,
+ const H5S_t H5_ATTR_UNUSED *space)
{
FUNC_ENTER_NOAPI_NOINIT_NOERR
@@ -464,7 +471,8 @@ H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space)
PURPOSE
Serialize the current selection into a user-provided buffer.
USAGE
- herr_t H5S_none_serialize(space, p)
+ herr_t H5S_none_serialize(f, space, p)
+ H5F_t *f IN: File pointer
const H5S_t *space; IN: Dataspace with selection to serialize
uint8_t **p; OUT: Pointer to buffer to put serialized
selection. Will be advanced to end of
@@ -480,7 +488,7 @@ H5S_none_serial_size(const H5S_t H5_ATTR_UNUSED *space)
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S_none_serialize(const H5S_t *space, uint8_t **p)
+H5S_none_serialize(const H5F_t H5_ATTR_UNUSED *f, const H5S_t *space, uint8_t **p)
{
FUNC_ENTER_NOAPI_NOINIT_NOERR
@@ -502,9 +510,12 @@ H5S_none_serialize(const H5S_t *space, uint8_t **p)
PURPOSE
Deserialize the current selection from a user-provided buffer.
USAGE
- herr_t H5S_none_deserialize(space, p)
+ herr_t H5S_none_deserialize(f, space, version, flags, p)
+ H5F_t *f IN: File pointer
H5S_t *space; IN/OUT: Dataspace pointer to place
selection into
+ uint32_t version IN: Selection version
+ uint8_t flags IN: Selection flags
uint8 **p; OUT: Pointer to buffer holding serialized
selection. Will be advanced to end of
serialized selection.
@@ -519,7 +530,9 @@ H5S_none_serialize(const H5S_t *space, uint8_t **p)
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S_none_deserialize(H5S_t *space, const uint8_t H5_ATTR_UNUSED **p)
+H5S_none_deserialize(const H5F_t H5_ATTR_UNUSED *f, H5S_t *space,
+ uint32_t H5_ATTR_UNUSED version, uint8_t H5_ATTR_UNUSED flags,
+ const uint8_t H5_ATTR_UNUSED **p)
{
herr_t ret_value = SUCCEED; /* return value */
@@ -610,6 +623,34 @@ H5S_none_offset(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUSED *offse
/*--------------------------------------------------------------------------
NAME
+ H5S_none_unlim_dim
+ PURPOSE
+ Return unlimited dimension of selection, or -1 if none
+ USAGE
+ int H5S_none_unlim_dim(space)
+ H5S_t *space; IN: Dataspace pointer to check
+ RETURNS
+ Unlimited dimension of selection, or -1 if none (never fails).
+ DESCRIPTION
+ Returns the index of the unlimited dimension in this selection, or -1
+ if the selection has no unlimited dimension. "None" selections cannot
+ have an unlimited dimension, so this function always returns -1.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static int
+H5S_none_unlim_dim(const H5S_t H5_ATTR_UNUSED *space)
+{
+ FUNC_ENTER_NOAPI_NOERR
+
+ FUNC_LEAVE_NOAPI(-1)
+} /* end H5S_none_unlim_dim() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
H5S_none_is_contiguous
PURPOSE
Check if a "none" selection is contiguous within the dataspace extent.
diff --git a/src/H5Spkg.h b/src/H5Spkg.h
index 5f84717..f719201 100644
--- a/src/H5Spkg.h
+++ b/src/H5Spkg.h
@@ -34,6 +34,13 @@
#define H5S_VALID_MAX 0x01
#define H5S_VALID_PERM 0x02
+/* Flags for serialization of selections */
+#define H5S_SELECT_FLAG_UNLIM 0x01
+#define H5S_SELECT_FLAG_BITS (H5S_SELECT_FLAG_UNLIM)
+
+/* Length of stack-allocated sequences for "project intersect" routines */
+#define H5S_PROJECT_INTERSECT_NSEQS 256
+
/* Initial version of the dataspace information */
#define H5O_SDSPACE_VERSION_1 1
@@ -48,6 +55,10 @@
* and 'size' callbacks for places to change when updating this. */
#define H5O_SDSPACE_VERSION_LATEST H5O_SDSPACE_VERSION_2
+/* Maximum dimension size (highest value that is not a special value e.g.
+ * H5S_UNLIMITED) */
+#define H5S_MAX_SIZE ((hsize_t)(hssize_t)(-2))
+
/*
* Dataspace extent information
@@ -113,6 +124,8 @@ typedef struct {
* are only used for re-gurgitating the original values used to set the
* hyperslab to the application when it queries the hyperslab selection
* information. */
+ int unlim_dim; /* Dimension where selection is unlimited, or -1 if none */
+ hsize_t num_elem_non_unlim; /* # of elements in a "slice" excluding the unlimited dimension */
H5S_hyper_span_info_t *span_lst; /* List of hyperslab span information */
} H5S_hyper_sel_t;
@@ -128,15 +141,22 @@ typedef herr_t (*H5S_sel_release_func_t)(H5S_t *space);
/* Method to determine if current selection is valid for dataspace */
typedef htri_t (*H5S_sel_is_valid_func_t)(const H5S_t *space);
/* Method to determine number of bytes required to store current selection */
-typedef hssize_t (*H5S_sel_serial_size_func_t)(const H5S_t *space);
+typedef hssize_t (*H5S_sel_serial_size_func_t)(const H5F_t *f, const H5S_t *space);
/* Method to store current selection in "serialized" form (a byte sequence suitable for storing on disk) */
-typedef herr_t (*H5S_sel_serialize_func_t)(const H5S_t *space, uint8_t **p);
-/* Method to store create selection from "serialized" form (a byte sequence suitable for storing on disk) */
-typedef herr_t (*H5S_sel_deserialize_func_t)(H5S_t *space, const uint8_t **p);
+typedef herr_t (*H5S_sel_serialize_func_t)(const H5F_t *f, const H5S_t *space,
+ uint8_t **p);
+/* Method to create selection from "serialized" form (a byte sequence suitable for storing on disk) */
+typedef herr_t (*H5S_sel_deserialize_func_t)(const H5F_t *f, H5S_t *space,
+ uint32_t version, uint8_t flags, const uint8_t **p);
/* Method to determine smallest n-D bounding box containing the current selection */
typedef herr_t (*H5S_sel_bounds_func_t)(const H5S_t *space, hsize_t *start, hsize_t *end);
/* Method to determine linear offset of initial element in selection within dataspace */
typedef herr_t (*H5S_sel_offset_func_t)(const H5S_t *space, hsize_t *offset);
+/* Method to get unlimited dimension of selection (or -1 for none) */
+typedef int (*H5S_sel_unlim_dim_func_t)(const H5S_t *space);
+/* Method to get the number of elements in a slice through the unlimited dimension */
+typedef herr_t (*H5S_sel_num_elem_non_unlim_func_t)(const H5S_t *space,
+ hsize_t *num_elem_non_unlim);
/* Method to determine if current selection is contiguous */
typedef htri_t (*H5S_sel_is_contiguous_func_t)(const H5S_t *space);
/* Method to determine if current selection is a single block */
@@ -166,6 +186,8 @@ typedef struct {
H5S_sel_deserialize_func_t deserialize; /* Method to store create selection from "serialized" form (a byte sequence suitable for storing on disk) */
H5S_sel_bounds_func_t bounds; /* Method to determine to smallest n-D bounding box containing the current selection */
H5S_sel_offset_func_t offset; /* Method to determine linear offset of initial element in selection within dataspace */
+ H5S_sel_unlim_dim_func_t unlim_dim; /* Method to get unlimited dimension of selection (or -1 for none) */
+ H5S_sel_num_elem_non_unlim_func_t num_elem_non_unlim; /* Method to get the number of elements in a slice through the unlimited dimension */
H5S_sel_is_contiguous_func_t is_contiguous; /* Method to determine if current selection is contiguous */
H5S_sel_is_single_func_t is_single; /* Method to determine if current selection is a single block */
H5S_sel_is_regular_func_t is_regular; /* Method to determine if current selection is "regular" */
@@ -245,10 +267,14 @@ H5_DLLVAR const H5S_select_class_t H5S_sel_point[1];
/* Extent functions */
H5_DLL herr_t H5S_extent_release(H5S_extent_t *extent);
-H5_DLL herr_t H5S_extent_copy(H5S_extent_t *dst, const H5S_extent_t *src,
+H5_DLL herr_t H5S_extent_copy_real(H5S_extent_t *dst, const H5S_extent_t *src,
hbool_t copy_max);
/* Operations on selections */
+H5_DLL herr_t H5S__hyper_project_intersection(const H5S_t *src_space,
+ const H5S_t *dst_space, const H5S_t *src_intersect_space,
+ H5S_t *proj_space);
+H5_DLL herr_t H5S__hyper_subtract(H5S_t *space, H5S_t *subtract_space);
/* Testing functions */
#ifdef H5S_TESTING
diff --git a/src/H5Spoint.c b/src/H5Spoint.c
index 20a60bb..d10b600 100644
--- a/src/H5Spoint.c
+++ b/src/H5Spoint.c
@@ -40,11 +40,14 @@ static herr_t H5S_point_get_seq_list(const H5S_t *space, unsigned flags,
size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len);
static herr_t H5S_point_release(H5S_t *space);
static htri_t H5S_point_is_valid(const H5S_t *space);
-static hssize_t H5S_point_serial_size(const H5S_t *space);
-static herr_t H5S_point_serialize(const H5S_t *space, uint8_t **p);
-static herr_t H5S_point_deserialize(H5S_t *space, const uint8_t **p);
+static hssize_t H5S_point_serial_size(const H5F_t *f, const H5S_t *space);
+static herr_t H5S_point_serialize(const H5F_t *f, const H5S_t *space,
+ uint8_t **p);
+static herr_t H5S_point_deserialize(const H5F_t *f, H5S_t *space,
+ uint32_t version, uint8_t flags, const uint8_t **p);
static herr_t H5S_point_bounds(const H5S_t *space, hsize_t *start, hsize_t *end);
static herr_t H5S_point_offset(const H5S_t *space, hsize_t *off);
+static int H5S_point_unlim_dim(const H5S_t *space);
static htri_t H5S_point_is_contiguous(const H5S_t *space);
static htri_t H5S_point_is_single(const H5S_t *space);
static htri_t H5S_point_is_regular(const H5S_t *space);
@@ -76,6 +79,8 @@ const H5S_select_class_t H5S_sel_point[1] = {{
H5S_point_deserialize,
H5S_point_bounds,
H5S_point_offset,
+ H5S_point_unlim_dim,
+ NULL,
H5S_point_is_contiguous,
H5S_point_is_single,
H5S_point_is_regular,
@@ -759,7 +764,8 @@ done:
information.
USAGE
hssize_t H5S_point_serial_size(space)
- H5S_t *space; IN: Dataspace pointer to query
+ H5F_t *f IN: File pointer
+ H5S_t *space; IN: Dataspace pointer to query
RETURNS
The number of bytes required on success, negative on an error.
DESCRIPTION
@@ -771,7 +777,7 @@ done:
REVISION LOG
--------------------------------------------------------------------------*/
static hssize_t
-H5S_point_serial_size (const H5S_t *space)
+H5S_point_serial_size(const H5F_t H5_ATTR_UNUSED *f, const H5S_t *space)
{
H5S_pnt_node_t *curr; /* Point information nodes */
hssize_t ret_value; /* return value */
@@ -805,6 +811,7 @@ H5S_point_serial_size (const H5S_t *space)
Serialize the current selection into a user-provided buffer.
USAGE
herr_t H5S_point_serialize(space, p)
+ H5F_t *f IN: File pointer
const H5S_t *space; IN: Dataspace with selection to serialize
uint8_t **p; OUT: Pointer to buffer to put serialized
selection. Will be advanced to end of
@@ -820,7 +827,8 @@ H5S_point_serial_size (const H5S_t *space)
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S_point_serialize (const H5S_t *space, uint8_t **p)
+H5S_point_serialize(const H5F_t H5_ATTR_UNUSED *f, const H5S_t *space,
+ uint8_t **p)
{
H5S_pnt_node_t *curr; /* Point information nodes */
uint8_t *lenp; /* pointer to length location for later storage */
@@ -873,8 +881,11 @@ H5S_point_serialize (const H5S_t *space, uint8_t **p)
Deserialize the current selection from a user-provided buffer.
USAGE
herr_t H5S_point_deserialize(space, p)
+ H5F_t *f IN: File pointer
H5S_t *space; IN/OUT: Dataspace pointer to place
selection into
+ uint32_t version IN: Selection version
+ uint8_t flags IN: Selection flags
uint8 **p; OUT: Pointer to buffer holding serialized
selection. Will be advanced to end of
serialized selection.
@@ -889,7 +900,9 @@ H5S_point_serialize (const H5S_t *space, uint8_t **p)
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S_point_deserialize (H5S_t *space, const uint8_t **p)
+H5S_point_deserialize(const H5F_t H5_ATTR_UNUSED *f, H5S_t *space,
+ uint32_t H5_ATTR_UNUSED version, uint8_t H5_ATTR_UNUSED flags,
+ const uint8_t **p)
{
H5S_seloper_t op=H5S_SELECT_SET; /* Selection operation */
unsigned rank; /* Rank of points */
@@ -1186,6 +1199,35 @@ done:
/*--------------------------------------------------------------------------
NAME
+ H5S_point_unlim_dim
+ PURPOSE
+ Return unlimited dimension of selection, or -1 if none
+ USAGE
+ int H5S_point_unlim_dim(space)
+ H5S_t *space; IN: Dataspace pointer to check
+ RETURNS
+ Unlimited dimension of selection, or -1 if none (never fails).
+ DESCRIPTION
+ Returns the index of the unlimited dimension in this selection, or -1
+ if the selection has no unlimited dimension. Currently point
+ selections cannot have an unlimited dimension, so this function always
+ returns -1.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+static int
+H5S_point_unlim_dim(const H5S_t H5_ATTR_UNUSED *space)
+{
+ FUNC_ENTER_NOAPI_NOERR
+
+ FUNC_LEAVE_NOAPI(-1)
+} /* end H5S_point_unlim_dim() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
H5S_point_is_contiguous
PURPOSE
Check if a point selection is contiguous within the dataspace extent.
diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h
index 7b7b8c6..8918a4f 100644
--- a/src/H5Sprivate.h
+++ b/src/H5Sprivate.h
@@ -125,8 +125,8 @@ typedef struct H5S_sel_iter_t {
#define H5S_SELECT_GET_SEQ_LIST(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN) ((*(S)->select.type->get_seq_list)(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN))
#define H5S_SELECT_VALID(S) ((*(S)->select.type->is_valid)(S))
#define H5S_SELECT_RELEASE(S) ((*(S)->select.type->release)(S))
-#define H5S_SELECT_SERIAL_SIZE(S) ((*(S)->select.type->serial_size)(S))
-#define H5S_SELECT_SERIALIZE(S,BUF) ((*(S)->select.type->serialize)(S,BUF))
+#define H5S_SELECT_SERIAL_SIZE(F,S) ((*(S)->select.type->serial_size)(F,S))
+#define H5S_SELECT_SERIALIZE(F,S,BUF) ((*(S)->select.type->serialize)(F,S,BUF))
#define H5S_SELECT_BOUNDS(S,START,END) ((*(S)->select.type->bounds)(S,START,END))
#define H5S_SELECT_OFFSET(S, OFFSET) ((*(S)->select.type->offset)(S, OFFSET))
#define H5S_SELECT_IS_CONTIGUOUS(S) ((*(S)->select.type->is_contiguous)(S))
@@ -151,8 +151,8 @@ typedef struct H5S_sel_iter_t {
#define H5S_SELECT_GET_SEQ_LIST(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN) (H5S_select_get_seq_list(S,FLAGS,ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN))
#define H5S_SELECT_VALID(S) (H5S_select_valid(S))
#define H5S_SELECT_RELEASE(S) (H5S_select_release(S))
-#define H5S_SELECT_SERIAL_SIZE(S) (H5S_select_serial_size(S))
-#define H5S_SELECT_SERIALIZE(S,BUF) (H5S_select_serialize(S,BUF))
+#define H5S_SELECT_SERIAL_SIZE(F,S) (H5S_select_serial_size(F,S))
+#define H5S_SELECT_SERIALIZE(F,S,BUF) (H5S_select_serialize(F,S,BUF))
#define H5S_SELECT_BOUNDS(S,START,END) (H5S_get_select_bounds(S,START,END))
#define H5S_SELECT_OFFSET(S, OFFSET) (H5S_get_select_offset(S, OFFSET))
#define H5S_SELECT_IS_CONTIGUOUS(S) (H5S_select_is_contiguous(S))
@@ -171,7 +171,7 @@ typedef struct H5S_sel_iter_t {
#endif /* H5S_PACKAGE */
/* Handle these two callbacks in a special way, since they have prologs that need to be executed */
#define H5S_SELECT_COPY(DST,SRC,SHARE) (H5S_select_copy(DST,SRC,SHARE))
-#define H5S_SELECT_DESERIALIZE(S,BUF) (H5S_select_deserialize(S,BUF))
+#define H5S_SELECT_DESERIALIZE(F,S,BUF) (H5S_select_deserialize(F,S,BUF))
/* Operations on dataspaces */
@@ -190,10 +190,14 @@ H5_DLL herr_t H5S_append(H5F_t *f, hid_t dxpl_id, struct H5O_t *oh, H5S_t *ds);
H5_DLL H5S_t *H5S_read(const struct H5O_loc_t *loc, hid_t dxpl_id);
H5_DLL htri_t H5S_set_extent(H5S_t *space, const hsize_t *size);
H5_DLL herr_t H5S_set_extent_real(H5S_t *space, const hsize_t *size);
+H5_DLL herr_t H5S_set_extent_simple(H5S_t *space, unsigned rank,
+ const hsize_t *dims, const hsize_t *max);
H5_DLL H5S_t *H5S_create(H5S_class_t type);
H5_DLL H5S_t *H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/],
const hsize_t maxdims[/*rank*/]);
H5_DLL herr_t H5S_set_latest_version(H5S_t *ds);
+H5_DLL herr_t H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc);
+H5_DLL H5S_t *H5S_decode(const unsigned char **p);
H5_DLL herr_t H5S_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE *stream,
int indent, int fwidth);
#ifndef H5_NO_DEPRECATED_SYMBOLS
@@ -204,9 +208,11 @@ H5_DLL int H5S_extend(H5S_t *space, const hsize_t *size);
H5_DLL hsize_t H5S_extent_nelem(const H5S_extent_t *ext);
H5_DLL int H5S_extent_get_dims(const H5S_extent_t *ext, hsize_t dims[], hsize_t max_dims[]);
H5_DLL htri_t H5S_extent_equal(const H5S_t *ds1, const H5S_t *ds2);
+H5_DLL herr_t H5S_extent_copy(H5S_t *dst, const H5S_t *src);
/* Operations on selections */
-H5_DLL herr_t H5S_select_deserialize(H5S_t **space, const uint8_t **p);
+H5_DLL herr_t H5S_select_deserialize(const H5F_t *f, H5S_t **space,
+ const uint8_t **p);
H5_DLL H5S_sel_type H5S_get_select_type(const H5S_t *space);
H5_DLL herr_t H5S_select_iterate(void *buf, hid_t type_id, const H5S_t *space,
H5D_operator_t op, void *operator_data);
@@ -216,6 +222,9 @@ H5_DLL htri_t H5S_select_valid(const H5S_t *space);
H5_DLL hssize_t H5S_get_select_npoints(const H5S_t *space);
H5_DLL herr_t H5S_get_select_bounds(const H5S_t *space, hsize_t *start, hsize_t *end);
H5_DLL herr_t H5S_get_select_offset(const H5S_t *space, hsize_t *offset);
+H5_DLL int H5S_get_select_unlim_dim(const H5S_t *space);
+H5_DLL herr_t H5S_get_select_num_elem_non_unlim(const H5S_t *space,
+ hsize_t *num_elem_non_unlim);
H5_DLL herr_t H5S_select_offset(H5S_t *space, const hssize_t *offset);
H5_DLL herr_t H5S_select_copy(H5S_t *dst, const H5S_t *src, hbool_t share_selection);
H5_DLL htri_t H5S_select_shape_same(const H5S_t *space1, const H5S_t *space2);
@@ -226,14 +235,19 @@ H5_DLL herr_t H5S_select_release(H5S_t *ds);
H5_DLL herr_t H5S_select_get_seq_list(const H5S_t *space, unsigned flags,
H5S_sel_iter_t *iter, size_t maxseq, size_t maxbytes,
size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len);
-H5_DLL hssize_t H5S_select_serial_size(const H5S_t *space);
-H5_DLL herr_t H5S_select_serialize(const H5S_t *space, uint8_t **p);
+H5_DLL hssize_t H5S_select_serial_size(const H5F_t *f, const H5S_t *space);
+H5_DLL herr_t H5S_select_serialize(const H5F_t *f, const H5S_t *space,
+ uint8_t **p);
H5_DLL htri_t H5S_select_is_contiguous(const H5S_t *space);
H5_DLL htri_t H5S_select_is_single(const H5S_t *space);
H5_DLL htri_t H5S_select_is_regular(const H5S_t *space);
H5_DLL herr_t H5S_select_adjust_u(H5S_t *space, const hsize_t *offset);
H5_DLL herr_t H5S_select_project_scalar(const H5S_t *space, hsize_t *offset);
H5_DLL herr_t H5S_select_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset);
+H5_DLL herr_t H5S_select_project_intersection(const H5S_t *src_space,
+ const H5S_t *dst_space, const H5S_t *src_intersect_space,
+ H5S_t **new_space_ptr);
+H5_DLL herr_t H5S_select_subtract(H5S_t *space, H5S_t *subtract_space);
/* Operations on all selections */
H5_DLL herr_t H5S_select_all(H5S_t *space, hbool_t rel_prev);
@@ -259,6 +273,15 @@ H5_DLL htri_t H5S_hyper_intersect_block (H5S_t *space, hsize_t *start, hsize_t *
H5_DLL herr_t H5S_hyper_adjust_s(H5S_t *space, const hssize_t *offset);
H5_DLL htri_t H5S_hyper_normalize_offset(H5S_t *space, hssize_t *old_offset);
H5_DLL herr_t H5S_hyper_denormalize_offset(H5S_t *space, const hssize_t *old_offset);
+H5_DLL herr_t H5S_hyper_clip_unlim(H5S_t *space, hsize_t clip_size);
+H5_DLL hsize_t H5S_hyper_get_clip_extent(const H5S_t *clip_space,
+ const H5S_t *match_space, hbool_t incl_trail);
+H5_DLL hsize_t H5S_hyper_get_clip_extent_match(const H5S_t *clip_space,
+ const H5S_t *match_space, hsize_t match_clip_size, hbool_t incl_trail);
+H5_DLL H5S_t *H5S_hyper_get_unlim_block(const H5S_t *space,
+ hsize_t block_index);
+H5_DLL hsize_t H5S_hyper_get_first_inc_block(const H5S_t *space,
+ hsize_t clip_size, hbool_t *partial);
/* Operations on selection iterators */
H5_DLL herr_t H5S_select_iter_init(H5S_sel_iter_t *iter, const H5S_t *space, size_t elmt_size);
diff --git a/src/H5Spublic.h b/src/H5Spublic.h
index 37d3866..721c4bf 100644
--- a/src/H5Spublic.h
+++ b/src/H5Spublic.h
@@ -25,7 +25,7 @@
/* Define atomic datatypes */
#define H5S_ALL (hid_t)0
-#define H5S_UNLIMITED ((hsize_t)(hssize_t)(-1))
+#define H5S_UNLIMITED HSIZE_UNDEF
/* Define user-level maximum number of dimensions */
#define H5S_MAX_RANK 32
diff --git a/src/H5Sselect.c b/src/H5Sselect.c
index e04ae16..e965dba 100644
--- a/src/H5Sselect.c
+++ b/src/H5Sselect.c
@@ -63,7 +63,9 @@ static herr_t H5S_select_iter_next_block(H5S_sel_iter_t *iter);
herr_t
H5S_select_offset(H5S_t *space, const hssize_t *offset)
{
- FUNC_ENTER_NOAPI_NOINIT_NOERR
+ herr_t ret_value = SUCCEED;
+
+ FUNC_ENTER_NOAPI(FAIL)
/* Check args */
HDassert(space);
@@ -76,7 +78,8 @@ H5S_select_offset(H5S_t *space, const hssize_t *offset)
/* Indicate that the offset was changed */
space->select.offset_changed = TRUE;
- FUNC_LEAVE_NOAPI(SUCCEED)
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
} /* H5S_select_offset() */
@@ -218,7 +221,7 @@ H5S_select_get_seq_list(const H5S_t *space, unsigned flags,
*-------------------------------------------------------------------------
*/
hssize_t
-H5S_select_serial_size(const H5S_t *space)
+H5S_select_serial_size(const H5F_t *f, const H5S_t *space)
{
hssize_t ret_value; /* Return value */
@@ -227,7 +230,7 @@ H5S_select_serial_size(const H5S_t *space)
HDassert(space);
/* Call the selection type's serial_size function */
- ret_value=(*space->select.type->serial_size)(space);
+ ret_value=(*space->select.type->serial_size)(f, space);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_select_serial_size() */
@@ -258,7 +261,7 @@ H5S_select_serial_size(const H5S_t *space)
REVISION LOG
--------------------------------------------------------------------------*/
herr_t
-H5S_select_serialize(const H5S_t *space, uint8_t **p)
+H5S_select_serialize(const H5F_t *f, const H5S_t *space, uint8_t **p)
{
herr_t ret_value=SUCCEED; /* Return value */
@@ -268,7 +271,7 @@ H5S_select_serialize(const H5S_t *space, uint8_t **p)
HDassert(p);
/* Call the selection type's serialize function */
- ret_value=(*space->select.type->serialize)(space,p);
+ ret_value = (*space->select.type->serialize)(f, space, p);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_select_serialize() */
@@ -450,11 +453,13 @@ H5S_select_valid(const H5S_t *space)
REVISION LOG
--------------------------------------------------------------------------*/
herr_t
-H5S_select_deserialize (H5S_t **space, const uint8_t **p)
+H5S_select_deserialize(const H5F_t *f, H5S_t **space, const uint8_t **p)
{
H5S_t *tmp_space; /* Pointer to actual dataspace to use, either
*space or a newly allocated one */
uint32_t sel_type; /* Pointer to the selection type */
+ uint32_t version; /* Version number */
+ uint8_t flags = 0; /* Flags */
herr_t ret_value=FAIL; /* return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -472,8 +477,23 @@ H5S_select_deserialize (H5S_t **space, const uint8_t **p)
/* Decode selection type */
UINT32DECODE(*p, sel_type);
- /* Skip over the remainder of the header */
- *p += 12;
+ /* Decode version */
+ UINT32DECODE(*p, version);
+
+ if(version >= (uint32_t)2) {
+ /* Decode flags */
+ flags = *(*p)++;
+
+ /* Check for unknown flags */
+ if(flags & ~H5S_SELECT_FLAG_BITS)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTLOAD, FAIL, "unknown flag for selection")
+
+ /* Skip over the remainder of the header */
+ *p += 4;
+ } /* end if */
+ else
+ /* Skip over the remainder of the header */
+ *p += 8;
/* Decode and check or patch rank for point and hyperslab selections */
if((sel_type == H5S_SEL_POINTS) || (sel_type == H5S_SEL_HYPERSLABS)) {
@@ -482,9 +502,14 @@ H5S_select_deserialize (H5S_t **space, const uint8_t **p)
/* Decode the rank of the point selection */
UINT32DECODE(*p,rank);
- if(!*space)
+ if(!*space) {
+ hsize_t dims[H5S_MAX_RANK];
+
/* Patch the rank of the allocated dataspace */
- tmp_space->extent.rank = rank;
+ (void)HDmemset(dims, 0, (size_t)rank * sizeof(dims[0]));
+ if(H5S_set_extent_simple(tmp_space, rank, dims, NULL) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't set dimensions")
+ } /* end if */
else
/* Verify the rank of the provided dataspace */
if(rank != tmp_space->extent.rank)
@@ -494,19 +519,19 @@ H5S_select_deserialize (H5S_t **space, const uint8_t **p)
/* Make routine for selection type */
switch(sel_type) {
case H5S_SEL_POINTS: /* Sequence of points selected */
- ret_value = (*H5S_sel_point->deserialize)(tmp_space, p);
+ ret_value = (*H5S_sel_point->deserialize)(f, tmp_space, version, flags, p);
break;
case H5S_SEL_HYPERSLABS: /* Hyperslab selection defined */
- ret_value = (*H5S_sel_hyper->deserialize)(tmp_space, p);
+ ret_value = (*H5S_sel_hyper->deserialize)(f, tmp_space, version, flags, p);
break;
case H5S_SEL_ALL: /* Entire extent selected */
- ret_value = (*H5S_sel_all->deserialize)(tmp_space, p);
+ ret_value = (*H5S_sel_all->deserialize)(f, tmp_space, version, flags, p);
break;
case H5S_SEL_NONE: /* Nothing selected */
- ret_value = (*H5S_sel_none->deserialize)(tmp_space, p);
+ ret_value = (*H5S_sel_none->deserialize)(f, tmp_space, version, flags, p);
break;
default:
@@ -668,6 +693,89 @@ H5S_get_select_offset(const H5S_t *space, hsize_t *offset)
/*--------------------------------------------------------------------------
NAME
+ H5S_get_select_unlim_dim
+ PURPOSE
+ Gets the unlimited dimension in the selection, or -1 if there is no
+ unlimited dimension.
+ USAGE
+ int H5S_get_select_unlim_dim(space)
+ const H5S_t *space; IN: Dataspace pointer of selection to query
+ RETURNS
+ Unlimited dimension in the selection, or -1 if there is no unlimited
+ dimension (never fails)
+ DESCRIPTION
+ Gets the unlimited dimension in the selection, or -1 if there is no
+ unlimited dimension.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ Currently only implemented for hyperslab selections, all others
+ simply return -1.
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+int
+H5S_get_select_unlim_dim(const H5S_t *space)
+{
+ herr_t ret_value; /* return value */
+
+ FUNC_ENTER_NOAPI_NOINIT_NOERR
+
+ /* Check args */
+ HDassert(space);
+
+ ret_value = (*space->select.type->unlim_dim)(space);
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5S_get_select_unlim_dim() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S_get_select_num_elem_non_unlim
+ PURPOSE
+ Gets the number of elements in the non-unlimited dimensions
+ USAGE
+ herr_t H5S_get_select_num_elem_non_unlim(space,num_elem_non_unlim)
+ H5S_t *space; IN: Dataspace pointer to check
+ hsize_t *num_elem_non_unlim; OUT: Number of elements in the non-unlimited dimensions
+ RETURNS
+ Non-negative on success/Negative on failure
+ DESCRIPTION
+ Returns the number of elements in a slice through the non-unlimited
+ dimensions of the selection. Fails if the selection has no unlimited
+ dimension.
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+herr_t
+H5S_get_select_num_elem_non_unlim(const H5S_t *space,
+ hsize_t *num_elem_non_unlim)
+{
+ herr_t ret_value = SUCCEED; /* return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Check args */
+ HDassert(space);
+ HDassert(num_elem_non_unlim);
+
+ /* Check for selection callback */
+ if(!space->select.type->num_elem_non_unlim)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "selection type has no num_elem_non_unlim callback")
+
+ /* Make selection callback */
+ if((*space->select.type->num_elem_non_unlim)(space, num_elem_non_unlim) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOUNT, FAIL, "can't get number of elements in non-unlimited dimension")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5S_get_select_unlim_dim() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
H5S_select_is_contiguous
PURPOSE
Determines if a selection is contiguous in the dataspace
@@ -2101,3 +2209,193 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5S_select_fill() */
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S_select_project_intersection
+
+ PURPOSE
+ Projects the intersection of of the selections of src_space and
+ src_intersect_space within the selection of src_space as a selection
+ within the selection of dst_space
+
+ USAGE
+ herr_t H5S_select_project_intersection(src_space,dst_space,src_intersect_space,proj_space)
+ H5S_t *src_space; IN: Selection that is mapped to dst_space, and intersected with src_intersect_space
+ H5S_t *dst_space; IN: Selection that is mapped to src_space, and which contains the result
+ H5S_t *src_intersect_space; IN: Selection whose intersection with src_space is projected to dst_space to obtain the result
+ H5S_t *proj_space; OUT: Will contain the result (intersection of src_intersect_space and src_space projected from src_space to dst_space) after the operation
+
+ RETURNS
+ Non-negative on success/Negative on failure.
+
+ DESCRIPTION
+ Projects the intersection of of the selections of src_space and
+ src_intersect_space within the selection of src_space as a selection
+ within the selection of dst_space. The result is placed in the
+ selection of proj_space.
+
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+herr_t
+H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space,
+ const H5S_t *src_intersect_space, H5S_t **new_space_ptr)
+{
+ H5S_t *new_space = NULL; /* New dataspace constructed */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity checks */
+ HDassert(src_space);
+ HDassert(dst_space);
+ HDassert(src_intersect_space);
+ HDassert(new_space_ptr);
+
+ /* Create new space, using dst extent. Start with "all" selection. */
+ if(NULL == (new_space = H5S_create(H5S_SIMPLE)))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "unable to create output dataspace")
+ if(H5S_extent_copy_real(&new_space->extent, &dst_space->extent, TRUE) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "unable to copy destination space extent")
+
+ /* Set offset to zeros */
+ (void)HDmemset(new_space->select.offset, 0, (size_t)new_space->extent.rank * sizeof(new_space->select.offset[0]));
+ new_space->select.offset_changed = FALSE;
+
+ /* If the intersecting space is "all", the intersection must be equal to the
+ * source space and the projection must be equal to the destination space */
+ if(src_intersect_space->select.type->type == H5S_SEL_ALL) {
+ /* Copy the destination selection. */
+ if(H5S_select_copy(new_space, dst_space, FALSE) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "can't copy destination space selection")
+ } /* end if */
+ /* If any of the spaces are "none", the projection must also be "none" */
+ else if((src_intersect_space->select.type->type == H5S_SEL_NONE)
+ || (src_space->select.type->type == H5S_SEL_NONE)
+ || (dst_space->select.type->type == H5S_SEL_NONE)) {
+ /* Change to "none" selection */
+ if(H5S_select_none(new_space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
+ } /* end if */
+ /* If any of the spaces use point selection, fall back to general algorithm
+ */
+ else if((src_intersect_space->select.type->type == H5S_SEL_POINTS)
+ || (src_space->select.type->type == H5S_SEL_POINTS)
+ || (dst_space->select.type->type == H5S_SEL_POINTS))
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "point selections not currently supported")
+ else {
+ HDassert(src_intersect_space->select.type->type == H5S_SEL_HYPERSLABS);
+ /* Intersecting space is hyperslab selection. Call the hyperslab
+ * routine to project to another hyperslab selection. */
+ if(H5S__hyper_project_intersection(src_space, dst_space, src_intersect_space, new_space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't project hyperslab ondot destination selection")
+ } /* end else */
+
+ /* load the address of the new space into *new_space_ptr */
+ *new_space_ptr = new_space;
+
+done:
+ /* Cleanup on error */
+ if(ret_value < 0) {
+ if(new_space && H5S_close(new_space) < 0)
+ HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace")
+ } /* end if */
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5S_select_project_intersection() */
+
+
+/*--------------------------------------------------------------------------
+ NAME
+ H5S_select_subtract
+
+ PURPOSE
+ Subtract one selection from another
+
+ USAGE
+ herr_t H5S_select_subtract(space,subtract_space)
+ H5S_t *space; IN/OUT: Selection to be operated on
+ H5S_t *subtract_space; IN: Selection that will be subtracted from space
+
+ RETURNS
+ Non-negative on success/Negative on failure.
+
+ DESCRIPTION
+ Removes any and all portions of space that are also present in
+ subtract_space. In essence, performs an A_NOT_B operation with the
+ two selections.
+
+ GLOBAL VARIABLES
+ COMMENTS, BUGS, ASSUMPTIONS
+ EXAMPLES
+ REVISION LOG
+--------------------------------------------------------------------------*/
+herr_t
+H5S_select_subtract(H5S_t *space, H5S_t *subtract_space)
+{
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI(FAIL)
+
+ /* Sanity checks */
+ HDassert(space);
+ HDassert(subtract_space);
+
+ /* If either space is using the none selection, then we do not need to do
+ * anything */
+ if((space->select.type->type != H5S_SEL_NONE)
+ && (subtract_space->select.type->type != H5S_SEL_NONE)) {
+ /* If subtract_space is using the all selection, set space to none */
+ if(subtract_space->select.type->type == H5S_SEL_ALL) {
+ /* Change to "none" selection */
+ if(H5S_select_none(space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
+ } /* end if */
+ else {
+ /* Check for point selection in subtract_space, convert to
+ * hyperslab */
+ if(subtract_space->select.type->type == H5S_SEL_POINTS)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "point selections not currently supported")
+
+ /* Check for point or all selection in space, convert to hyperslab
+ */
+ if(space->select.type->type == H5S_SEL_ALL) {
+ /* Convert current "all" selection to "real" hyperslab selection */
+ /* Then allow operation to proceed */
+ hsize_t tmp_start[H5O_LAYOUT_NDIMS]; /* Temporary start information */
+ hsize_t tmp_stride[H5O_LAYOUT_NDIMS]; /* Temporary stride information */
+ hsize_t tmp_count[H5O_LAYOUT_NDIMS]; /* Temporary count information */
+ hsize_t tmp_block[H5O_LAYOUT_NDIMS]; /* Temporary block information */
+ unsigned i; /* Local index variable */
+
+ /* Fill in temporary information for the dimensions */
+ for(i = 0; i < space->extent.rank; i++) {
+ tmp_start[i] = 0;
+ tmp_stride[i] = 1;
+ tmp_count[i] = 1;
+ tmp_block[i] = space->extent.size[i];
+ } /* end for */
+
+ /* Convert to hyperslab selection */
+ if(H5S_select_hyperslab(space, H5S_SELECT_SET, tmp_start, tmp_stride, tmp_count, tmp_block) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't convert selection")
+ } /* end if */
+ else if(space->select.type->type == H5S_SEL_POINTS)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "point selections not currently supported")
+
+ HDassert(space->select.type->type == H5S_SEL_HYPERSLABS);
+ HDassert(subtract_space->select.type->type == H5S_SEL_HYPERSLABS);
+
+ /* Both spaces are now hyperslabs, perform the operation */
+ if(H5S__hyper_subtract(space, subtract_space) < 0)
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't subtract hyperslab")
+ } /* end else */
+ } /* end if */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* H5S_select_subtract() */
+
diff --git a/src/H5err.txt b/src/H5err.txt
index 5a38cdf..e0ebf5e 100644
--- a/src/H5err.txt
+++ b/src/H5err.txt
@@ -217,6 +217,7 @@ MINOR, DSPACE, H5E_CANTSELECT, Can't select hyperslab
MINOR, DSPACE, H5E_CANTNEXT, Can't move to next iterator location
MINOR, DSPACE, H5E_BADSELECT, Invalid selection
MINOR, DSPACE, H5E_CANTCOMPARE, Can't compare objects
+MINOR, DSPACE, H5E_CANTAPPEND, Can't append object
# Property list errors
MINOR, PLIST, H5E_CANTGET, Can't get value
diff --git a/src/H5public.h b/src/H5public.h
index 8c7da05..603c187 100644
--- a/src/H5public.h
+++ b/src/H5public.h
@@ -176,6 +176,7 @@ H5_GCC_DIAG_ON(long-long)
#else
# error "nothing appropriate for hsize_t"
#endif
+#define HSIZE_UNDEF ((hsize_t)(hssize_t)(-1))
/*
* File addresses have their own types.
diff --git a/src/H5trace.c b/src/H5trace.c
index e6a091c..66b3a0c 100644
--- a/src/H5trace.c
+++ b/src/H5trace.c
@@ -524,6 +524,10 @@ H5_trace(const double *returning, const char *func, const char *type, ...)
fprintf(out, "H5D_CHUNKED");
break;
+ case H5D_VIRTUAL:
+ fprintf(out, "H5D_VIRTUAL");
+ break;
+
case H5D_NLAYOUTS:
fprintf(out, "H5D_NLAYOUTS");
break;
@@ -676,6 +680,36 @@ H5_trace(const double *returning, const char *func, const char *type, ...)
} /* end else */
break;
+ case 'v':
+ if(ptr) {
+ if(vp)
+ fprintf(out, "0x%lx", (unsigned long)vp);
+ else
+ fprintf(out, "NULL");
+ } /* end if */
+ else {
+ H5D_vds_view_t view = (H5D_vds_view_t)va_arg(ap, int);
+
+ switch(view) {
+ case H5D_VDS_ERROR:
+ fprintf(out, "H5D_VDS_ERROR");
+ break;
+
+ case H5D_VDS_FIRST_MISSING:
+ fprintf(out, "H5D_VDS_FIRST_MISSING");
+ break;
+
+ case H5D_VDS_LAST_AVAILABLE:
+ fprintf(out, "H5D_VDS_LAST_AVAILABLE");
+ break;
+
+ default:
+ fprintf(out, "%ld", (long)view);
+ break;
+ } /* end switch */
+ } /* end else */
+ break;
+
default:
fprintf (out, "BADTYPE(D%c)", type[1]);
goto error;
diff --git a/src/Makefile.am b/src/Makefile.am
index b6c4dad..662b9a8 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -50,7 +50,7 @@ libhdf5_la_SOURCES= H5.c H5checksum.c H5dbg.c H5system.c H5timer.c H5trace.c \
H5D.c H5Dbtree.c H5Dchunk.c H5Dcompact.c H5Dcontig.c H5Ddbg.c \
H5Ddeprec.c H5Defl.c H5Dfill.c H5Dint.c \
H5Dio.c H5Dlayout.c \
- H5Dmpio.c H5Doh.c H5Dscatgath.c H5Dselect.c H5Dtest.c \
+ H5Dmpio.c H5Doh.c H5Dscatgath.c H5Dselect.c H5Dtest.c H5Dvirtual.c \
H5E.c H5Edeprec.c H5Eint.c \
H5EA.c H5EAcache.c H5EAdbg.c H5EAdblkpage.c H5EAdblock.c H5EAhdr.c \
H5EAiblock.c H5EAint.c H5EAsblock.c H5EAstat.c H5EAtest.c \
diff --git a/src/Makefile.in b/src/Makefile.in
index e5a991f..08662f7 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -156,23 +156,23 @@ am_libhdf5_la_OBJECTS = H5.lo H5checksum.lo H5dbg.lo H5system.lo \
H5Cmpio.lo H5CS.lo H5D.lo H5Dbtree.lo H5Dchunk.lo \
H5Dcompact.lo H5Dcontig.lo H5Ddbg.lo H5Ddeprec.lo H5Defl.lo \
H5Dfill.lo H5Dint.lo H5Dio.lo H5Dlayout.lo H5Dmpio.lo H5Doh.lo \
- H5Dscatgath.lo H5Dselect.lo H5Dtest.lo H5E.lo H5Edeprec.lo \
- H5Eint.lo H5EA.lo H5EAcache.lo H5EAdbg.lo H5EAdblkpage.lo \
- H5EAdblock.lo H5EAhdr.lo H5EAiblock.lo H5EAint.lo \
- H5EAsblock.lo H5EAstat.lo H5EAtest.lo H5F.lo H5Fint.lo \
- H5Faccum.lo H5Fcwfs.lo H5Fdbg.lo H5Fdeprec.lo H5Fefc.lo \
- H5Ffake.lo H5Fio.lo H5Fmount.lo H5Fmpi.lo H5Fquery.lo \
- H5Fsfile.lo H5Fsuper.lo H5Fsuper_cache.lo H5Ftest.lo H5FA.lo \
- H5FAcache.lo H5FAdbg.lo H5FAdblock.lo H5FAdblkpage.lo \
- H5FAhdr.lo H5FAstat.lo H5FAtest.lo H5FD.lo H5FDcore.lo \
- H5FDdirect.lo H5FDfamily.lo H5FDint.lo H5FDlog.lo H5FDmpi.lo \
- H5FDmpio.lo H5FDmulti.lo H5FDsec2.lo H5FDspace.lo H5FDstdio.lo \
- H5FL.lo H5FO.lo H5FS.lo H5FScache.lo H5FSdbg.lo H5FSsection.lo \
- H5FSstat.lo H5FStest.lo H5G.lo H5Gbtree2.lo H5Gcache.lo \
- H5Gcompact.lo H5Gdense.lo H5Gdeprec.lo H5Gent.lo H5Gint.lo \
- H5Glink.lo H5Gloc.lo H5Gname.lo H5Gnode.lo H5Gobj.lo H5Goh.lo \
- H5Groot.lo H5Gstab.lo H5Gtest.lo H5Gtraverse.lo H5HF.lo \
- H5HFbtree2.lo H5HFcache.lo H5HFdbg.lo H5HFdblock.lo \
+ H5Dscatgath.lo H5Dselect.lo H5Dtest.lo H5Dvirtual.lo H5E.lo \
+ H5Edeprec.lo H5Eint.lo H5EA.lo H5EAcache.lo H5EAdbg.lo \
+ H5EAdblkpage.lo H5EAdblock.lo H5EAhdr.lo H5EAiblock.lo \
+ H5EAint.lo H5EAsblock.lo H5EAstat.lo H5EAtest.lo H5F.lo \
+ H5Fint.lo H5Faccum.lo H5Fcwfs.lo H5Fdbg.lo H5Fdeprec.lo \
+ H5Fefc.lo H5Ffake.lo H5Fio.lo H5Fmount.lo H5Fmpi.lo \
+ H5Fquery.lo H5Fsfile.lo H5Fsuper.lo H5Fsuper_cache.lo \
+ H5Ftest.lo H5FA.lo H5FAcache.lo H5FAdbg.lo H5FAdblock.lo \
+ H5FAdblkpage.lo H5FAhdr.lo H5FAstat.lo H5FAtest.lo H5FD.lo \
+ H5FDcore.lo H5FDdirect.lo H5FDfamily.lo H5FDint.lo H5FDlog.lo \
+ H5FDmpi.lo H5FDmpio.lo H5FDmulti.lo H5FDsec2.lo H5FDspace.lo \
+ H5FDstdio.lo H5FL.lo H5FO.lo H5FS.lo H5FScache.lo H5FSdbg.lo \
+ H5FSsection.lo H5FSstat.lo H5FStest.lo H5G.lo H5Gbtree2.lo \
+ H5Gcache.lo H5Gcompact.lo H5Gdense.lo H5Gdeprec.lo H5Gent.lo \
+ H5Gint.lo H5Glink.lo H5Gloc.lo H5Gname.lo H5Gnode.lo H5Gobj.lo \
+ H5Goh.lo H5Groot.lo H5Gstab.lo H5Gtest.lo H5Gtraverse.lo \
+ H5HF.lo H5HFbtree2.lo H5HFcache.lo H5HFdbg.lo H5HFdblock.lo \
H5HFdtable.lo H5HFhdr.lo H5HFhuge.lo H5HFiblock.lo H5HFiter.lo \
H5HFman.lo H5HFsection.lo H5HFspace.lo H5HFstat.lo H5HFtest.lo \
H5HFtiny.lo H5HG.lo H5HGcache.lo H5HGdbg.lo H5HGquery.lo \
@@ -766,7 +766,7 @@ libhdf5_la_SOURCES = H5.c H5checksum.c H5dbg.c H5system.c H5timer.c H5trace.c \
H5D.c H5Dbtree.c H5Dchunk.c H5Dcompact.c H5Dcontig.c H5Ddbg.c \
H5Ddeprec.c H5Defl.c H5Dfill.c H5Dint.c \
H5Dio.c H5Dlayout.c \
- H5Dmpio.c H5Doh.c H5Dscatgath.c H5Dselect.c H5Dtest.c \
+ H5Dmpio.c H5Doh.c H5Dscatgath.c H5Dselect.c H5Dtest.c H5Dvirtual.c \
H5E.c H5Edeprec.c H5Eint.c \
H5EA.c H5EAcache.c H5EAdbg.c H5EAdblkpage.c H5EAdblock.c H5EAhdr.c \
H5EAiblock.c H5EAint.c H5EAsblock.c H5EAstat.c H5EAtest.c \
@@ -1019,6 +1019,7 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Dscatgath.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Dselect.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Dtest.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Dvirtual.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5E.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5EA.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5EAcache.Plo@am__quote@
diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt
index f33c2df..dc79cdb 100644
--- a/test/CMakeLists.txt
+++ b/test/CMakeLists.txt
@@ -246,6 +246,7 @@ set (H5_TESTS
cross_read
freespace
mf
+ vds
farray
earray
btree2
diff --git a/test/CMakeTests.cmake b/test/CMakeTests.cmake
index 5fe51ed..40c0f44 100644
--- a/test/CMakeTests.cmake
+++ b/test/CMakeTests.cmake
@@ -427,6 +427,7 @@ add_test (
tstint2.h5
unregister_filter_1.h5
unregister_filter_2.h5
+ vds_1.h5
WORKING_DIRECTORY
${HDF5_TEST_BINARY_DIR}/H5TEST
)
diff --git a/test/Makefile.am b/test/Makefile.am
index b5ebcf3..7588dc0 100644
--- a/test/Makefile.am
+++ b/test/Makefile.am
@@ -46,7 +46,7 @@ TEST_PROG= testhdf5 lheap ohdr stab gheap cache cache_api cache_tagging \
big mtime fillval mount flush1 flush2 app_ref enum \
set_extent ttsafe enc_dec_plist enc_dec_plist_with_endianess\
getname vfd ntypes dangle dtransform reserved cross_read \
- freespace mf farray earray btree2 fheap file_image unregister
+ freespace mf vds farray earray btree2 fheap file_image unregister
# List programs to be built when testing here. error_test and err_compat are
# built at the same time as the other tests, but executed by testerror.sh.
@@ -150,7 +150,8 @@ CHECK_CLEANFILES+=accum.h5 cmpd_dset.h5 compact_dataset.h5 dataset.h5 dset_offse
earray.h5 efc[0-5].h5 log_vfd_out.log \
new_multi_file_v16-r.h5 new_multi_file_v16-s.h5 \
split_get_file_image_test-m.h5 split_get_file_image_test-r.h5 \
- file_image_core_test.h5.copy unregister_filter_1.h5 unregister_filter_2.h5
+ file_image_core_test.h5.copy unregister_filter_1.h5 unregister_filter_2.h5 \
+ vds_virt.h5 vds_src_[0-1].h5
# Sources for testhdf5 executable
testhdf5_SOURCES=testhdf5.c tarray.c tattr.c tchecksum.c tconfig.c tfile.c \
diff --git a/test/Makefile.in b/test/Makefile.in
index e8877d7..22237fa 100644
--- a/test/Makefile.in
+++ b/test/Makefile.in
@@ -195,9 +195,9 @@ am__EXEEXT_1 = testhdf5$(EXEEXT) lheap$(EXEEXT) ohdr$(EXEEXT) \
enc_dec_plist_with_endianess$(EXEEXT) getname$(EXEEXT) \
vfd$(EXEEXT) ntypes$(EXEEXT) dangle$(EXEEXT) \
dtransform$(EXEEXT) reserved$(EXEEXT) cross_read$(EXEEXT) \
- freespace$(EXEEXT) mf$(EXEEXT) farray$(EXEEXT) earray$(EXEEXT) \
- btree2$(EXEEXT) fheap$(EXEEXT) file_image$(EXEEXT) \
- unregister$(EXEEXT)
+ freespace$(EXEEXT) mf$(EXEEXT) vds$(EXEEXT) farray$(EXEEXT) \
+ earray$(EXEEXT) btree2$(EXEEXT) fheap$(EXEEXT) \
+ file_image$(EXEEXT) unregister$(EXEEXT)
@HAVE_SHARED_CONDITIONAL_TRUE@am__EXEEXT_2 = plugin$(EXEEXT)
am__EXEEXT_3 = gen_bad_ohdr$(EXEEXT) gen_bogus$(EXEEXT) \
gen_cross$(EXEEXT) gen_deflate$(EXEEXT) gen_filters$(EXEEXT) \
@@ -520,6 +520,10 @@ unregister_SOURCES = unregister.c
unregister_OBJECTS = unregister.$(OBJEXT)
unregister_LDADD = $(LDADD)
unregister_DEPENDENCIES = libh5test.la $(LIBHDF5)
+vds_SOURCES = vds.c
+vds_OBJECTS = vds.$(OBJEXT)
+vds_LDADD = $(LDADD)
+vds_DEPENDENCIES = libh5test.la $(LIBHDF5)
vfd_SOURCES = vfd.c
vfd_OBJECTS = vfd.$(OBJEXT)
vfd_LDADD = $(LDADD)
@@ -575,7 +579,7 @@ SOURCES = $(libdynlib1_la_SOURCES) $(libdynlib2_la_SOURCES) \
mount.c mtime.c ntypes.c objcopy.c ohdr.c plugin.c pool.c \
reserved.c set_extent.c space_overflow.c stab.c \
tcheck_version.c $(testhdf5_SOURCES) testmeta.c \
- $(ttsafe_SOURCES) unlink.c unregister.c vfd.c
+ $(ttsafe_SOURCES) unlink.c unregister.c vds.c vfd.c
DIST_SOURCES = $(am__libdynlib1_la_SOURCES_DIST) \
$(am__libdynlib2_la_SOURCES_DIST) \
$(am__libdynlib3_la_SOURCES_DIST) $(libh5test_la_SOURCES) \
@@ -594,7 +598,7 @@ DIST_SOURCES = $(am__libdynlib1_la_SOURCES_DIST) \
mount.c mtime.c ntypes.c objcopy.c ohdr.c plugin.c pool.c \
reserved.c set_extent.c space_overflow.c stab.c \
tcheck_version.c $(testhdf5_SOURCES) testmeta.c \
- $(ttsafe_SOURCES) unlink.c unregister.c vfd.c
+ $(ttsafe_SOURCES) unlink.c unregister.c vds.c vfd.c
am__can_run_installinfo = \
case $$AM_UPDATE_INFO_DIR in \
n|no|NO) false;; \
@@ -1109,7 +1113,8 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 accum.h5 \
earray.h5 efc[0-5].h5 log_vfd_out.log new_multi_file_v16-r.h5 \
new_multi_file_v16-s.h5 split_get_file_image_test-m.h5 \
split_get_file_image_test-r.h5 file_image_core_test.h5.copy \
- unregister_filter_1.h5 unregister_filter_2.h5
+ unregister_filter_1.h5 unregister_filter_2.h5 vds_virt.h5 \
+ vds_src_[0-1].h5
# Test script for error_test and err_compat
TEST_SCRIPT = testerror.sh testlibinfo.sh testcheck_version.sh \
@@ -1131,7 +1136,7 @@ TEST_PROG = testhdf5 lheap ohdr stab gheap cache cache_api cache_tagging \
big mtime fillval mount flush1 flush2 app_ref enum \
set_extent ttsafe enc_dec_plist enc_dec_plist_with_endianess\
getname vfd ntypes dangle dtransform reserved cross_read \
- freespace mf farray earray btree2 fheap file_image unregister
+ freespace mf vds farray earray btree2 fheap file_image unregister
# These programs generate test files for the tests. They don't need to be
@@ -1617,6 +1622,10 @@ unregister$(EXEEXT): $(unregister_OBJECTS) $(unregister_DEPENDENCIES) $(EXTRA_un
@rm -f unregister$(EXEEXT)
$(AM_V_CCLD)$(LINK) $(unregister_OBJECTS) $(unregister_LDADD) $(LIBS)
+vds$(EXEEXT): $(vds_OBJECTS) $(vds_DEPENDENCIES) $(EXTRA_vds_DEPENDENCIES)
+ @rm -f vds$(EXEEXT)
+ $(AM_V_CCLD)$(LINK) $(vds_OBJECTS) $(vds_LDADD) $(LIBS)
+
vfd$(EXEEXT): $(vfd_OBJECTS) $(vfd_DEPENDENCIES) $(EXTRA_vfd_DEPENDENCIES)
@rm -f vfd$(EXEEXT)
$(AM_V_CCLD)$(LINK) $(vfd_OBJECTS) $(vfd_LDADD) $(LIBS)
@@ -1736,6 +1745,7 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/tvltypes.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/unlink.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/unregister.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/vds.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/vfd.Po@am__quote@
.c.o:
@@ -2262,6 +2272,13 @@ mf.log: mf$(EXEEXT)
--log-file $$b.log --trs-file $$b.trs \
$(am__common_driver_flags) $(AM_LOG_DRIVER_FLAGS) $(LOG_DRIVER_FLAGS) -- $(LOG_COMPILE) \
"$$tst" $(AM_TESTS_FD_REDIRECT)
+vds.log: vds$(EXEEXT)
+ @p='vds$(EXEEXT)'; \
+ b='vds'; \
+ $(am__check_pre) $(LOG_DRIVER) --test-name "$$f" \
+ --log-file $$b.log --trs-file $$b.trs \
+ $(am__common_driver_flags) $(AM_LOG_DRIVER_FLAGS) $(LOG_DRIVER_FLAGS) -- $(LOG_COMPILE) \
+ "$$tst" $(AM_TESTS_FD_REDIRECT)
farray.log: farray$(EXEEXT)
@p='farray$(EXEEXT)'; \
b='farray'; \
diff --git a/test/h5test.c b/test/h5test.c
index fefacda..aa99c1f 100644
--- a/test/h5test.c
+++ b/test/h5test.c
@@ -93,7 +93,7 @@ static const char *multi_letters = "msbrglo";
static herr_t h5_errors(hid_t estack, void *client_data);
static char * h5_fixname_real(const char *base_name, hid_t fapl, const char *suffix,
- char *fullname, size_t size);
+ char *fullname, size_t size, hbool_t nest_printf);
/*-------------------------------------------------------------------------
@@ -122,69 +122,94 @@ h5_errors(hid_t estack, void H5_ATTR_UNUSED *client_data)
/*-------------------------------------------------------------------------
- * Function: h5_cleanup
+ * Function: h5_cleanup_files
*
- * Purpose: Cleanup temporary test files.
+ * Purpose: Cleanup temporary test files (always).
* base_name contains the list of test file names.
- * The file access property list is also closed.
*
- * Return: Non-zero if cleanup actions were performed; zero otherwise.
+ * Return: void
*
- * Programmer: Albert Cheng
+ * Programmer: Neil Fortner
+ * June 1, 2015
+ * Original: Albert Cheng
* May 28, 1998
*
*-------------------------------------------------------------------------
*/
-int
-h5_cleanup(const char *base_name[], hid_t fapl)
+void
+h5_cleanup_files(const char *base_name[], hid_t fapl)
{
- int retval = 0;
+ int i;
- if(GetTestCleanup()) {
- int i;
+ for(i = 0; base_name[i]; i++) {
+ char filename[1024];
+ char temp[2048];
+ hid_t driver;
+
+ if(NULL == h5_fixname(base_name[i], fapl, filename, sizeof(filename)))
+ continue;
+
+ driver = H5Pget_driver(fapl);
- for(i = 0; base_name[i]; i++) {
- char filename[1024];
- char temp[2048];
- hid_t driver;
+ if(driver == H5FD_FAMILY) {
+ int j;
- if(NULL == h5_fixname(base_name[i], fapl, filename, sizeof(filename)))
- continue;
+ for(j = 0; /*void*/; j++) {
+ HDsnprintf(temp, sizeof temp, filename, j);
- driver = H5Pget_driver(fapl);
+ if(HDaccess(temp, F_OK) < 0)
+ break;
- if(driver == H5FD_FAMILY) {
- int j;
+ HDremove(temp);
+ } /* end for */
+ } else if(driver == H5FD_CORE) {
+ hbool_t backing; /* Whether the core file has backing store */
- for(j = 0; /*void*/; j++) {
- HDsnprintf(temp, sizeof temp, filename, j);
+ H5Pget_fapl_core(fapl, NULL, &backing);
- if(HDaccess(temp, F_OK) < 0)
- break;
+ /* If the file was stored to disk with bacing store, remove it */
+ if(backing)
+ HDremove(filename);
+ } else if (driver == H5FD_MULTI) {
+ H5FD_mem_t mt;
- HDremove(temp);
- } /* end for */
- } else if(driver == H5FD_CORE) {
- hbool_t backing; /* Whether the core file has backing store */
+ HDassert(HDstrlen(multi_letters)==H5FD_MEM_NTYPES);
- H5Pget_fapl_core(fapl, NULL, &backing);
+ for(mt = H5FD_MEM_DEFAULT; mt < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,mt)) {
+ HDsnprintf(temp, sizeof temp, "%s-%c.h5", filename, multi_letters[mt]);
+ HDremove(temp); /*don't care if it fails*/
+ } /* end for */
+ } else {
+ HDremove(filename);
+ }
+ } /* end for */
- /* If the file was stored to disk with bacing store, remove it */
- if(backing)
- HDremove(filename);
- } else if (driver == H5FD_MULTI) {
- H5FD_mem_t mt;
+ return;
+} /* end h5_cleanup_files() */
- HDassert(HDstrlen(multi_letters)==H5FD_MEM_NTYPES);
- for(mt = H5FD_MEM_DEFAULT; mt < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,mt)) {
- HDsnprintf(temp, sizeof temp, "%s-%c.h5", filename, multi_letters[mt]);
- HDremove(temp); /*don't care if it fails*/
- } /* end for */
- } else {
- HDremove(filename);
- }
- } /* end for */
+/*-------------------------------------------------------------------------
+ * Function: h5_cleanup
+ *
+ * Purpose: Cleanup temporary test files.
+ * base_name contains the list of test file names.
+ * The file access property list is also closed.
+ *
+ * Return: Non-zero if cleanup actions were performed; zero otherwise.
+ *
+ * Programmer: Albert Cheng
+ * May 28, 1998
+ *
+ *-------------------------------------------------------------------------
+ */
+int
+h5_cleanup(const char *base_name[], hid_t fapl)
+{
+ int retval = 0;
+
+ if(GetTestCleanup()) {
+ /* Clean up files in base_name */
+ h5_cleanup_files(base_name, fapl);
retval = 1;
} /* end if */
@@ -270,7 +295,7 @@ h5_reset(void)
char *
h5_fixname(const char *base_name, hid_t fapl, char *fullname, size_t size)
{
- return (h5_fixname_real(base_name, fapl, ".h5", fullname, size));
+ return (h5_fixname_real(base_name, fapl, ".h5", fullname, size, FALSE));
}
@@ -290,7 +315,33 @@ h5_fixname(const char *base_name, hid_t fapl, char *fullname, size_t size)
char *
h5_fixname_no_suffix(const char *base_name, hid_t fapl, char *fullname, size_t size)
{
- return (h5_fixname_real(base_name, fapl, NULL, fullname, size));
+ return (h5_fixname_real(base_name, fapl, NULL, fullname, size, FALSE));
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: h5_fixname_printf
+ *
+ * Purpose: Same as h5_fixname but returns a filename that can be passed
+ * through a printf-style function once before being passed to the file
+ * driver. Basically, replaces all % characters used by the file
+ * driver with %%.
+ *
+ * Return: Success: The FULLNAME pointer.
+ *
+ * Failure: NULL if BASENAME or FULLNAME is the null
+ * pointer or if FULLNAME isn't large enough for
+ * the result.
+ *
+ * Programmer: Neil Fortner
+ * Wednesday, July 15, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+char *
+h5_fixname_printf(const char *base_name, hid_t fapl, char *fullname, size_t size)
+{
+ return (h5_fixname_real(base_name, fapl, ".h5", fullname, size, TRUE));
}
@@ -318,7 +369,7 @@ h5_fixname_no_suffix(const char *base_name, hid_t fapl, char *fullname, size_t s
*/
static char *
h5_fixname_real(const char *base_name, hid_t fapl, const char *_suffix,
- char *fullname, size_t size)
+ char *fullname, size_t size, hbool_t nest_printf)
{
const char *prefix = NULL;
char *ptr, last = '\0';
@@ -339,7 +390,7 @@ h5_fixname_real(const char *base_name, hid_t fapl, const char *_suffix,
if(suffix) {
if(H5FD_FAMILY == driver)
- suffix = "%05d.h5";
+ suffix = nest_printf ? "%%05d.h5" : "%05d.h5";
else if (H5FD_MULTI == driver)
suffix = NULL;
}
diff --git a/test/h5test.h b/test/h5test.h
index 5b203c6..9d097af 100644
--- a/test/h5test.h
+++ b/test/h5test.h
@@ -124,8 +124,10 @@ extern "C" {
/* Generally useful testing routines */
H5TEST_DLL int h5_cleanup(const char *base_name[], hid_t fapl);
+H5TEST_DLL void h5_cleanup_files(const char *base_name[], hid_t fapl);
H5TEST_DLL char *h5_fixname(const char *base_name, hid_t fapl, char *fullname, size_t size);
H5TEST_DLL char *h5_fixname_no_suffix(const char *base_name, hid_t fapl, char *fullname, size_t size);
+H5TEST_DLL char *h5_fixname_printf(const char *base_name, hid_t fapl, char *fullname, size_t size);
H5TEST_DLL hid_t h5_fileaccess(void);
H5TEST_DLL void h5_no_hwconv(void);
H5TEST_DLL const char *h5_rmprefix(const char *filename);
diff --git a/test/trefer.c b/test/trefer.c
index df4ea76..cb0f44e 100644
--- a/test/trefer.c
+++ b/test/trefer.c
@@ -521,6 +521,8 @@ test_reference_region(void)
uint8_t *tu8; /* Temporary pointer to uint8 data */
H5O_type_t obj_type; /* Type of object */
int i, j; /* counting variables */
+ hssize_t hssize_ret; /* hssize_t return value */
+ htri_t tri_ret; /* htri_t return value */
herr_t ret; /* Generic return value */
haddr_t addr = HADDR_UNDEF; /* test for undefined reference */
hid_t dset_NA; /* Dataset id for undefined reference */
@@ -614,6 +616,24 @@ test_reference_region(void)
ret = H5Rcreate(&wbuf[1], fid1, "/Dataset2", H5R_DATASET_REGION, sid2);
CHECK(ret, FAIL, "H5Rcreate");
+ /* Select unlimited hyperslab for third reference */
+ start[0] = 1; start[1] = 8;
+ stride[0] = 4; stride[1] = 1;
+ count[0] = H5S_UNLIMITED; count[1] = 1;
+ block[0] = 2; block[1] = 2;
+ ret = H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+
+ hssize_ret = H5Sget_select_npoints(sid2);
+ VERIFY(hssize_ret, (hssize_t)H5S_UNLIMITED, "H5Sget_select_npoints");
+
+ /* Store third dataset region */
+ ret = H5Rcreate(&wbuf[2], fid1, "/Dataset2", H5R_DATASET_REGION, sid2);
+ CHECK(ret, FAIL, "H5Rcreate");
+ ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &wbuf[0], &obj_type);
+ CHECK(ret, FAIL, "H5Rget_obj_type2");
+ VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
+
/* Write selection to disk */
ret = H5Dwrite(dset1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
CHECK(ret, FAIL, "H5Dwrite");
@@ -805,6 +825,31 @@ test_reference_region(void)
ret = H5Sclose(sid2);
CHECK(ret, FAIL, "H5Sclose");
+ /* Get the unlimited selection */
+ sid2 = H5Rget_region(dset1, H5R_DATASET_REGION, &rbuf[2]);
+ CHECK(sid2, FAIL, "H5Rget_region");
+
+ /* Verify correct hyperslab selected */
+ hssize_ret = H5Sget_select_npoints(sid2);
+ VERIFY(hssize_ret, (hssize_t)H5S_UNLIMITED, "H5Sget_select_npoints");
+ tri_ret = H5Sis_regular_hyperslab(sid2);
+ CHECK(tri_ret, FAIL, "H5Sis_regular_hyperslab");
+ VERIFY(tri_ret, TRUE, "H5Sis_regular_hyperslab Result");
+ ret = H5Sget_regular_hyperslab(sid2, start, stride, count, block);
+ CHECK(ret, FAIL, "H5Sget_regular_hyperslab");
+ VERIFY(start[0], (hsize_t)1, "Hyperslab Coordinates");
+ VERIFY(start[1], (hsize_t)8, "Hyperslab Coordinates");
+ VERIFY(stride[0], (hsize_t)4, "Hyperslab Coordinates");
+ VERIFY(stride[1], (hsize_t)1, "Hyperslab Coordinates");
+ VERIFY(count[0], H5S_UNLIMITED, "Hyperslab Coordinates");
+ VERIFY(count[1], (hsize_t)1, "Hyperslab Coordinates");
+ VERIFY(block[0], (hsize_t)2, "Hyperslab Coordinates");
+ VERIFY(block[1], (hsize_t)2, "Hyperslab Coordinates");
+
+ /* Close region space */
+ ret = H5Sclose(sid2);
+ CHECK(ret, FAIL, "H5Sclose");
+
/* Close first space */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
diff --git a/test/tselect.c b/test/tselect.c
index bdcdb2b..2062e73 100644
--- a/test/tselect.c
+++ b/test/tselect.c
@@ -13230,6 +13230,439 @@ test_hyper_regular(void)
/****************************************************************
**
+** test_hyper_unlim(): Tests unlimited hyperslab selections
+**
+****************************************************************/
+static void
+test_hyper_unlim_check(hid_t sid, hsize_t *dims, hssize_t enpoints,
+ hssize_t enblocks, hsize_t *eblock1, hsize_t *eblock2)
+{
+ hid_t lim_sid;
+ hsize_t start[3];
+ H5S_sel_type sel_type;
+ hssize_t npoints;
+ hssize_t nblocks;
+ hsize_t blocklist[12];
+ herr_t ret;
+
+ HDassert(enblocks <= 2);
+
+ /* Copy sid to lim_sid */
+ lim_sid = H5Scopy(sid);
+ CHECK(lim_sid, FAIL, "H5Scopy");
+
+ /* "And" lim_sid with dims to create limited selection */
+ HDmemset(start, 0, sizeof(start));
+ ret = H5Sselect_hyperslab(lim_sid, H5S_SELECT_AND, start, NULL, dims, NULL);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+
+ /* Check number of elements */
+ npoints = H5Sget_select_npoints(lim_sid);
+ CHECK(npoints, FAIL, "H5Sget_select_npoints");
+ VERIFY(npoints, enpoints, "H5Sget_select_npoints");
+
+ /* Get selection type */
+ sel_type = H5Sget_select_type(lim_sid);
+ CHECK(sel_type, H5S_SEL_ERROR, "H5Sget_select_type");
+
+ /* Only examine blocks for hyperslab selection */
+ if(sel_type == H5S_SEL_HYPERSLABS) {
+ /* Get number of blocks */
+ nblocks = H5Sget_select_hyper_nblocks(lim_sid);
+ CHECK(nblocks, FAIL, "H5Sget_select_hyper_nblocks");
+ VERIFY(nblocks, enblocks, "H5Sget_select_hyper_nblocks");
+
+ if(nblocks > 0) {
+ /* Get blocklist */
+ ret = H5Sget_select_hyper_blocklist(lim_sid, (hsize_t)0, (hsize_t)nblocks, blocklist);
+ CHECK(ret, FAIL, "H5Sget_select_hyper_blocklist");
+
+ /* Verify blocklist */
+ if(nblocks == (hssize_t)1) {
+ if(HDmemcmp(blocklist, eblock1, 6 * sizeof(eblock1[0])))
+ ERROR("H5Sget_select_hyper_blocklist");
+ } /* end if */
+ else {
+ HDassert(nblocks == (hssize_t)2);
+ if(HDmemcmp(blocklist, eblock1, 6 * sizeof(eblock1[0]))) {
+ if(HDmemcmp(blocklist, eblock2, 6 * sizeof(eblock2[0])))
+ ERROR("H5Sget_select_hyper_blocklist");
+ if(HDmemcmp(&blocklist[6], eblock1, 6 * sizeof(eblock1[0])))
+ ERROR("H5Sget_select_hyper_blocklist");
+ } /* end if */
+ else
+ if(HDmemcmp(&blocklist[6], eblock2, 6 * sizeof(eblock2[0])))
+ ERROR("H5Sget_select_hyper_blocklist");
+ } /* end else */
+ } /* end if */
+ } /* end if */
+ else
+ if(sel_type != H5S_SEL_NONE)
+ ERROR("H5Sget_select_type");
+
+ /* Close the limited dataspace */
+ ret = H5Sclose(lim_sid);
+ CHECK(ret, FAIL, "H5Sclose");
+} /* end test_hyper_unlim_check() */
+
+static void
+test_hyper_unlim(void)
+{
+ hid_t sid;
+ hsize_t dims[3] = {4, 4, 7};
+ hsize_t mdims[3] = {4, H5S_UNLIMITED, 7};
+ hsize_t start[3] = {1, 2, 1};
+ hsize_t stride[3] = {1, 1, 3};
+ hsize_t count[3] = {1, 1, 2};
+ hsize_t block[3] = {2, H5S_UNLIMITED, 2};
+ hsize_t start2[3];
+ hsize_t count2[3];
+ hsize_t eblock1[6] = {1, 2, 1, 2, 3, 2};
+ hsize_t eblock2[6] = {1, 2, 4, 2, 3, 5};
+ hssize_t offset[3] = {0, -1, 0};
+ hssize_t ssize_out;
+ herr_t ret;
+
+ /* Output message about test being performed */
+ MESSAGE(6, ("Testing unlimited hyperslab selections\n"));
+
+ /* Create dataspace */
+ sid = H5Screate_simple(3, dims, mdims);
+ CHECK(sid, FAIL, "H5Screate_simple");
+
+ /* Select unlimited hyperslab */
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+
+ /* Check with unlimited dimension clipped to 4 */
+ test_hyper_unlim_check(sid, dims, (hssize_t)16, (hssize_t)2, eblock1, eblock2);
+
+ /* Check with unlimited dimension clipped to 3 */
+ dims[1] = 3;
+ eblock1[4] = 2;
+ eblock2[4] = 2;
+ test_hyper_unlim_check(sid, dims, (hssize_t)8, (hssize_t)2, eblock1, eblock2);
+
+ /* Check with unlimited dimension clipped to 2 */
+ dims[1] = 2;
+ test_hyper_unlim_check(sid, dims, (hssize_t)0, (hssize_t)0, eblock1, eblock2);
+
+ /* Check with unlimited dimension clipped to 1 */
+ dims[1] = 1;
+ test_hyper_unlim_check(sid, dims, (hssize_t)0, (hssize_t)0, eblock1, eblock2);
+
+ /* Check with unlimited dimension clipped to 7 */
+ dims[1] = 7;
+ eblock1[4] = 6;
+ eblock2[4] = 6;
+ test_hyper_unlim_check(sid, dims, (hssize_t)40, (hssize_t)2, eblock1, eblock2);
+
+ /* Set offset of selection */
+ ret = H5Soffset_simple(sid, offset);
+ CHECK(ret, FAIL, "H5Soffset_simple");
+
+ /* Check with adjusted offset (should not affect result) */
+ test_hyper_unlim_check(sid, dims, (hssize_t)40, (hssize_t)2, eblock1, eblock2);
+
+ /* Reset offset of selection */
+ offset[1] = (hssize_t)0;
+ ret = H5Soffset_simple(sid, offset);
+ CHECK(ret, FAIL, "H5Soffset_simple");
+
+ /*
+ * Now try with multiple blocks in unlimited dimension
+ */
+ stride[1] = 3;
+ stride[2] = 1;
+ count[1] = H5S_UNLIMITED;
+ count[2] = 1;
+ block[1] = 2;
+
+ /* Select unlimited hyperslab */
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+
+ /* Check with new selection */
+ eblock1[1] = 2;
+ eblock1[4] = 3;
+ eblock2[1] = 5;
+ eblock2[2] = 1;
+ eblock2[4] = 6;
+ eblock2[5] = 2;
+ test_hyper_unlim_check(sid, dims, (hssize_t)16, (hssize_t)2, eblock1, eblock2);
+
+ /* Check with unlimited dimension clipped to 3 */
+ dims[1] = 3;
+ eblock1[4] = 2;
+ test_hyper_unlim_check(sid, dims, (hssize_t)4, (hssize_t)1, eblock1, eblock2);
+
+ /* Check with unlimited dimension clipped to 4 */
+ dims[1] = 4;
+ eblock1[4] = 3;
+ test_hyper_unlim_check(sid, dims, (hssize_t)8, (hssize_t)1, eblock1, eblock2);
+
+ /* Check with unlimited dimension clipped to 5 */
+ dims[1] = 5;
+ eblock1[4] = 3;
+ test_hyper_unlim_check(sid, dims, (hssize_t)8, (hssize_t)1, eblock1, eblock2);
+
+ /* Check with unlimited dimension clipped to 6 */
+ dims[1] = 6;
+ eblock1[4] = 3;
+ eblock2[4] = 5;
+ test_hyper_unlim_check(sid, dims, (hssize_t)12, (hssize_t)2, eblock1, eblock2);
+
+ /* Set offset of selection */
+ offset[1] = (hssize_t)-1;
+ ret = H5Soffset_simple(sid, offset);
+ CHECK(ret, FAIL, "H5Soffset_simple");
+
+ /* Check with adjusted offset (should not affect result) */
+ test_hyper_unlim_check(sid, dims, (hssize_t)12, (hssize_t)2, eblock1, eblock2);
+
+ /* Set offset of selection */
+ offset[1] = (hssize_t)3;
+ ret = H5Soffset_simple(sid, offset);
+ CHECK(ret, FAIL, "H5Soffset_simple");
+
+ /* Check with adjusted offset (should not affect result) */
+ test_hyper_unlim_check(sid, dims, (hssize_t)12, (hssize_t)2, eblock1, eblock2);
+
+ /* Reset offset of selection */
+ offset[1] = (hssize_t)0;
+ ret = H5Soffset_simple(sid, offset);
+ CHECK(ret, FAIL, "H5Soffset_simple");
+
+ /*
+ * Now try invalid operations
+ */
+ H5E_BEGIN_TRY {
+ /* Try multiple unlimited dimensions */
+ start[0] = 1;
+ start[1] = 2;
+ start[2] = 1;
+ stride[0] = 1;
+ stride[1] = 3;
+ stride[2] = 3;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ count[2] = H5S_UNLIMITED;
+ block[0] = 2;
+ block[1] = 2;
+ block[2] = 2;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+
+ /* Try unlimited count and block */
+ count[2] = 2;
+ block[1] = H5S_UNLIMITED;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ } H5E_END_TRY
+
+ /* Try operations with two unlimited selections */
+ block[1] = 2;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ H5E_BEGIN_TRY {
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_OR, start, NULL, count, NULL);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_AND, start, NULL, count, NULL);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_XOR, start, NULL, count, NULL);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_NOTB, start, NULL, count, NULL);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_NOTA, start, NULL, count, NULL);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ } H5E_END_TRY
+
+ /* Try invalid combination operations */
+ H5E_BEGIN_TRY {
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_OR, start, NULL, block, NULL);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_XOR, start, NULL, block, NULL);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_NOTB, start, NULL, block, NULL);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ } H5E_END_TRY
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, NULL, block, NULL);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ H5E_BEGIN_TRY {
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_OR, start, stride, count, block);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_XOR, start, stride, count, block);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_NOTA, start, stride, count, block);
+ VERIFY(ret, FAIL, "H5Sselect_hyperslab");
+ } H5E_END_TRY
+
+ /*
+ * Now test valid combination operations
+ */
+ /* unlim AND non-unlim */
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ count[2] = 2;
+ block[0] = 2;
+ block[1] = 2;
+ block[2] = 2;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ start2[0] = 2;
+ start2[1] = 2;
+ start2[2] = 0;
+ count2[0] = 5;
+ count2[1] = 4;
+ count2[2] = 2;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_AND, start2, NULL, count2, NULL);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ eblock1[0] = 2;
+ eblock1[3] = 2;
+ eblock1[1] = 2;
+ eblock1[4] = 3;
+ eblock1[2] = 1;
+ eblock1[5] = 1;
+ eblock2[0] = 2;
+ eblock2[3] = 2;
+ eblock2[1] = 5;
+ eblock2[4] = 5;
+ eblock2[2] = 1;
+ eblock2[5] = 1;
+ dims[0] = 50;
+ dims[1] = 50;
+ dims[2] = 50;
+ test_hyper_unlim_check(sid, dims, (hssize_t)3, (hssize_t)2, eblock1, eblock2);
+
+ /* unlim NOTA non-unlim */
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ count[2] = 2;
+ block[0] = 2;
+ block[1] = 2;
+ block[2] = 2;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ start2[0] = 1;
+ start2[1] = 5;
+ start2[2] = 2;
+ count2[0] = 2;
+ count2[1] = 2;
+ count2[2] = 6;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_NOTA, start2, NULL, count2, NULL);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ eblock1[0] = 1;
+ eblock1[3] = 2;
+ eblock1[1] = 5;
+ eblock1[4] = 6;
+ eblock1[2] = 3;
+ eblock1[5] = 3;
+ eblock2[0] = 1;
+ eblock2[3] = 2;
+ eblock2[1] = 5;
+ eblock2[4] = 6;
+ eblock2[2] = 6;
+ eblock2[5] = 7;
+ dims[0] = 50;
+ dims[1] = 50;
+ dims[2] = 50;
+ test_hyper_unlim_check(sid, dims, (hssize_t)12, (hssize_t)2, eblock1, eblock2);
+
+ /* non-unlim AND unlim */
+ start2[0] = 2;
+ start2[1] = 2;
+ start2[2] = 0;
+ count2[0] = 5;
+ count2[1] = 4;
+ count2[2] = 2;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start2, NULL, count2, NULL);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ count[2] = 2;
+ block[0] = 2;
+ block[1] = 2;
+ block[2] = 2;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_AND, start, stride, count, block);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ eblock1[0] = 2;
+ eblock1[3] = 2;
+ eblock1[1] = 2;
+ eblock1[4] = 3;
+ eblock1[2] = 1;
+ eblock1[5] = 1;
+ eblock2[0] = 2;
+ eblock2[3] = 2;
+ eblock2[1] = 5;
+ eblock2[4] = 5;
+ eblock2[2] = 1;
+ eblock2[5] = 1;
+ dims[0] = 50;
+ dims[1] = 50;
+ dims[2] = 50;
+ test_hyper_unlim_check(sid, dims, (hssize_t)3, (hssize_t)2, eblock1, eblock2);
+
+ /* non-unlim NOTB unlim */
+ start2[0] = 1;
+ start2[1] = 5;
+ start2[2] = 2;
+ count2[0] = 2;
+ count2[1] = 2;
+ count2[2] = 6;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start2, NULL, count2, NULL);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ count[2] = 2;
+ block[0] = 2;
+ block[1] = 2;
+ block[2] = 2;
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_NOTB, start, stride, count, block);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ eblock1[0] = 1;
+ eblock1[3] = 2;
+ eblock1[1] = 5;
+ eblock1[4] = 6;
+ eblock1[2] = 3;
+ eblock1[5] = 3;
+ eblock2[0] = 1;
+ eblock2[3] = 2;
+ eblock2[1] = 5;
+ eblock2[4] = 6;
+ eblock2[2] = 6;
+ eblock2[5] = 7;
+ dims[0] = 50;
+ dims[1] = 50;
+ dims[2] = 50;
+ test_hyper_unlim_check(sid, dims, (hssize_t)12, (hssize_t)2, eblock1, eblock2);
+
+ /* Test H5Sget_select_npoints() */
+ ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block);
+ CHECK(ret, FAIL, "H5Sselect_hyperslab");
+ ssize_out = H5Sget_select_npoints(sid);
+ VERIFY(ssize_out, (hssize_t)H5S_UNLIMITED, "H5Sget_select_npoints");
+
+ /* Test H5Sget_select_hyper_nblocks() */
+ ssize_out = H5Sget_select_hyper_nblocks(sid);
+ VERIFY(ssize_out, (hssize_t)H5S_UNLIMITED, "H5Sget_select_hyper_nblocks");
+
+ /* Test H5Sget_select_bounds() */
+ ret = H5Sget_select_bounds(sid, start2, count2);
+ CHECK(ret, FAIL, "H5Sget_select_bounds");
+ VERIFY(start2[0], start[0], "H5Sget_select_bounds");
+ VERIFY(start2[1], start[1], "H5Sget_select_bounds");
+ VERIFY(start2[2], start[2], "H5Sget_select_bounds");
+ VERIFY(count2[0], start[0] + (stride[0] * (count[0] - (hsize_t)1)) + block[0] - (hsize_t)1, "H5Sget_select_bounds");
+ VERIFY(count2[1], H5S_UNLIMITED, "H5Sget_select_bounds");
+ VERIFY(count2[2], start[2] + (stride[2] * (count[2] - (hsize_t)1)) + block[2] - (hsize_t)1, "H5Sget_select_bounds");
+
+ /* Close the dataspace */
+ ret = H5Sclose(sid);
+ CHECK(ret, FAIL, "H5Sclose");
+} /* end test_hyper_unlim() */
+
+/****************************************************************
+**
** test_select(): Main H5S selection testing routine.
**
****************************************************************/
@@ -13392,6 +13825,9 @@ test_select(void)
/* Test 'regular' hyperslab query routines */
test_hyper_regular();
+ /* Test unlimited hyperslab selections */
+ test_hyper_unlim();
+
} /* test_select() */
diff --git a/test/vds.c b/test/vds.c
new file mode 100644
index 0000000..5cdcef4
--- /dev/null
+++ b/test/vds.c
@@ -0,0 +1,11146 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Neil Fortner <nfortne2@hdfgroup.org>
+ * Monday, February 16, 2015
+ *
+ * Purpose: Tests datasets with virtual layout.
+ */
+#include "h5test.h"
+#include "H5srcdir.h"
+#include "H5Dprivate.h" /* For H5D_VIRTUAL_DEF_LIST_SIZE */
+
+typedef enum {
+ TEST_API_BASIC,
+ TEST_API_COPY_PLIST,
+ TEST_API_ENCDEC_PLIST,
+ TEST_API_CREATE_DSET,
+ TEST_API_REOPEN_DSET,
+ TEST_API_REOPEN_FILE,
+ TEST_API_NTESTS
+} test_api_config_t;
+
+const char *FILENAME[] = {
+ "vds_virt_0",
+ "vds_virt_1",
+ "vds_src_0",
+ "vds_src_1",
+ "vds%_src",
+ NULL
+};
+
+/* I/O test config flags */
+#define TEST_IO_CLOSE_SRC 0x01u
+#define TEST_IO_DIFFERENT_FILE 0x02u
+#define TEST_IO_REOPEN_VIRT 0x04u
+#define TEST_IO_NTESTS 0x08u
+
+#define LIST_DOUBLE_SIZE (H5D_VIRTUAL_DEF_LIST_SIZE + 1)
+
+#define FILENAME_BUF_SIZE 1024
+
+
+/*-------------------------------------------------------------------------
+ * Function: vds_select_equal
+ *
+ * Purpose: Helper function to check if the selections in the two
+ * provided dataspaces are the same.
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Neil Fortner
+ * Monday, March 2, 2015
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static htri_t
+vds_select_equal(hid_t space1, hid_t space2)
+{
+ H5S_sel_type type1;
+ H5S_sel_type type2;
+ hsize_t *buf1 = NULL;
+ hsize_t *buf2 = NULL;
+ size_t i;
+ htri_t ret_value = TRUE;
+
+ /* Get and compare selection types */
+ if((type1 = H5Sget_select_type(space1)) < 0)
+ TEST_ERROR
+ if((type2 = H5Sget_select_type(space2)) < 0)
+ TEST_ERROR
+ if(type1 != type2)
+ return FALSE;
+
+ /* Check selection type */
+ switch(type1) {
+ case H5S_SEL_NONE:
+ case H5S_SEL_ALL:
+ break;
+
+ case H5S_SEL_POINTS:
+ {
+ int rank1;
+ int rank2;
+ hssize_t npoints1;
+ hssize_t npoints2;
+
+ /* Get and compare rank */
+ if((rank1 = H5Sget_simple_extent_ndims(space1)) < 0)
+ TEST_ERROR
+ if((rank2 = H5Sget_simple_extent_ndims(space2)) < 0)
+ TEST_ERROR
+ if(rank1 != rank2)
+ return FALSE;
+
+ /* Get and compare number of points */
+ if((npoints1 = H5Sget_select_elem_npoints(space1)) < 0)
+ TEST_ERROR
+ if((npoints2 = H5Sget_select_elem_npoints(space2)) < 0)
+ TEST_ERROR
+ if(npoints1 != npoints2)
+ return FALSE;
+
+ /* Allocate point lists. Do not return directly afer
+ * allocating, to make sure buffers are freed. */
+ if(NULL == (buf1 = (hsize_t *)HDmalloc((size_t)rank1 * (size_t)npoints1 * sizeof(hsize_t))))
+ TEST_ERROR
+ if(NULL == (buf2 = (hsize_t *)HDmalloc((size_t)rank1 * (size_t)npoints1 * sizeof(hsize_t))))
+ TEST_ERROR
+
+ /* Get and compare point lists */
+ if(H5Sget_select_elem_pointlist(space1, (hsize_t)0, (hsize_t)npoints1, buf1) < 0)
+ TEST_ERROR
+ if(H5Sget_select_elem_pointlist(space2, (hsize_t)0, (hsize_t)npoints1, buf2) < 0)
+ TEST_ERROR
+ for(i = 0; i < ((size_t)rank1 * (size_t)npoints1); i++)
+ if(buf1[i] != buf2[i]) {
+ ret_value = FALSE;
+ break;
+ } /* end if */
+
+ /* Free buffers */
+ HDfree(buf1);
+ buf1 = NULL;
+ HDfree(buf2);
+ buf2 = NULL;
+ } /* end block */
+
+ break;
+
+ case H5S_SEL_HYPERSLABS:
+ {
+ int rank1;
+ int rank2;
+ hssize_t nblocks1;
+ hssize_t nblocks2;
+
+ /* Get and compare rank */
+ if((rank1 = H5Sget_simple_extent_ndims(space1)) < 0)
+ TEST_ERROR
+ if((rank2 = H5Sget_simple_extent_ndims(space2)) < 0)
+ TEST_ERROR
+ if(rank1 != rank2)
+ return FALSE;
+
+ /* Get and compare number of blocks */
+ if((nblocks1 = H5Sget_select_hyper_nblocks(space1)) < 0)
+ TEST_ERROR
+ if((nblocks2 = H5Sget_select_hyper_nblocks(space2)) < 0)
+ TEST_ERROR
+ if(nblocks1 != nblocks2)
+ return FALSE;
+
+ /* Allocate block lists. Do not return directly afer
+ * allocating, to make sure buffers are freed. */
+ if(NULL == (buf1 = (hsize_t *)HDmalloc((size_t)2 * (size_t)rank1 * (size_t)nblocks1 * sizeof(*buf1))))
+ TEST_ERROR
+ if(NULL == (buf2 = (hsize_t *)HDmalloc((size_t)2 * (size_t)rank1 * (size_t)nblocks1 * sizeof(*buf2))))
+ TEST_ERROR
+
+ /* Get and compare block lists */
+ if(H5Sget_select_hyper_blocklist(space1, (hsize_t)0, (hsize_t)nblocks1, buf1) < 0)
+ TEST_ERROR
+ if(H5Sget_select_hyper_blocklist(space2, (hsize_t)0, (hsize_t)nblocks1, buf2) < 0)
+ TEST_ERROR
+ for(i = 0; i < ((size_t)2 * (size_t)rank1 * (size_t)nblocks1); i++)
+ if(buf1[i] != buf2[i]) {
+ ret_value = FALSE;
+ break;
+ } /* end if */
+
+ /* Free buffers */
+ HDfree(buf1);
+ buf1 = NULL;
+ HDfree(buf2);
+ buf2 = NULL;
+ } /* end block */
+
+ break;
+
+ case H5S_SEL_ERROR:
+ case H5S_SEL_N:
+ default:
+ TEST_ERROR
+ } /* end switch */
+
+ return ret_value;
+
+error:
+ if(buf1)
+ HDfree(buf1);
+ if(buf2)
+ HDfree(buf2);
+
+ return -1;
+} /* end vds_select_equal() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: vds_check_mapping
+ *
+ * Purpose: Helper function to check if the ith virtual mapping in the
+ * provided dcpl is the same as that described by the other
+ * parameters.
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Neil Fortner
+ * Monday, March 2, 2015
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+vds_check_mapping(hid_t dcpl, size_t i, hid_t vspace, hid_t srcspace,
+ const char *filename, const char *dsetname)
+{
+ hid_t space_out = -1;
+ char name_out[32];
+ htri_t tri_ret;
+ ssize_t str_len;
+
+ HDassert(dcpl >= 0);
+ HDassert(vspace >= 0);
+ HDassert(srcspace >= 0);
+ HDassert(filename);
+ HDassert(dsetname);
+
+ /* Check vspace */
+ if((space_out = H5Pget_virtual_vspace(dcpl, i)) < 0)
+ TEST_ERROR
+ if((tri_ret = H5Sextent_equal(space_out, vspace)) < 0)
+ TEST_ERROR
+ if(!tri_ret)
+ TEST_ERROR
+ if((tri_ret = vds_select_equal(space_out, vspace)) < 0)
+ TEST_ERROR
+ if(!tri_ret)
+ TEST_ERROR
+ if(H5Sclose(space_out) < 0)
+ TEST_ERROR
+ space_out = -1;
+
+ /* Check srcspace */
+ if((space_out = H5Pget_virtual_srcspace(dcpl, i)) < 0)
+ TEST_ERROR
+ if((tri_ret = vds_select_equal(space_out, srcspace)) < 0)
+ TEST_ERROR
+ if(!tri_ret)
+ TEST_ERROR
+ if(H5Sclose(space_out) < 0)
+ TEST_ERROR
+ space_out = -1;
+
+ /* Check filename */
+ if((str_len = H5Pget_virtual_filename(dcpl, i, NULL, (size_t)0)) < 0)
+ TEST_ERROR
+ if((size_t)str_len != HDstrlen(filename))
+ TEST_ERROR
+ HDassert((size_t)str_len < sizeof(name_out));
+ if((str_len = H5Pget_virtual_filename(dcpl, i, name_out, sizeof(name_out))) < 0)
+ TEST_ERROR
+ if((size_t)str_len != HDstrlen(filename))
+ TEST_ERROR
+ if(HDstrncmp(name_out, filename, (size_t)str_len + 1) != 0)
+ TEST_ERROR
+
+ /* Check dsetname */
+ if((str_len = H5Pget_virtual_dsetname(dcpl, i, NULL, (size_t)0)) < 0)
+ TEST_ERROR
+ if((size_t)str_len != HDstrlen(dsetname))
+ TEST_ERROR
+ HDassert((size_t)str_len < sizeof(name_out));
+ if((str_len = H5Pget_virtual_dsetname(dcpl, i, name_out, sizeof(name_out))) < 0)
+ TEST_ERROR
+ if((size_t)str_len != HDstrlen(dsetname))
+ TEST_ERROR
+ if(HDstrncmp(name_out, dsetname, (size_t)str_len + 1) != 0)
+ TEST_ERROR
+
+ return 0;
+
+error:
+ H5E_BEGIN_TRY {
+ if(space_out >= 0)
+ (void)H5Sclose(space_out);
+ } H5E_END_TRY
+
+ return -1;
+} /* end vds_check_mapping() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: test_api
+ *
+ * Purpose: Tests API functions related to virtual datasets.
+ *
+ * Return: Success: 0
+ *
+ * Failure: number of errors
+ *
+ * Programmer: Neil Fortner
+ * Monday, February 16, 2015
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+/* Helper function to get DCPL for examination depending on config */
+static int
+test_api_get_ex_dcpl(test_api_config_t config, hid_t fapl, hid_t dcpl,
+ hid_t *ex_dcpl, hid_t vspace, char *filename, hsize_t exp_meta_size)
+{
+ hid_t file = -1; /* File */
+ hid_t dset = -1; /* Virtual dataset */
+ void *plist_buf = NULL; /* Serialized property list buffer */
+ H5O_info_t oinfo; /* Object info struct */
+ htri_t tri_ret;
+
+ HDassert((config >= TEST_API_BASIC) && (config < TEST_API_NTESTS));
+ HDassert(fapl >= 0);
+ HDassert(dcpl >= 0);
+ HDassert(ex_dcpl);
+ HDassert(*ex_dcpl < 0);
+ HDassert(vspace >= 0);
+ HDassert(filename);
+
+ /* Take different action depending on test configuration */
+ if(config >= TEST_API_CREATE_DSET) {
+ /* Create file and dataset */
+ if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ if((dset = H5Dcreate2(file, "vdset", H5T_NATIVE_INT, vspace, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Reopen dataset if requested */
+ if(config >= TEST_API_REOPEN_DSET) {
+ /* Close dataset */
+ if(H5Dclose(dset) < 0)
+ TEST_ERROR
+ dset = -1;
+
+ /* Reopen file if requested */
+ if(config == TEST_API_REOPEN_FILE) {
+ if(H5Fclose(file) < 0)
+ TEST_ERROR
+ file = -1;
+ if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Open dataset */
+ if((dset = H5Dopen2(file, "vdset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get DCPL from dataset */
+ if((*ex_dcpl = H5Dget_create_plist(dset)) < 0)
+ TEST_ERROR
+
+ /* Test H5Dget_offset() (just returns HADDR_UNDEF) */
+ if(HADDR_UNDEF != H5Dget_offset(dset))
+ TEST_ERROR
+
+ /* Test H5Oget_info returns correct metadata size */
+ if(H5Oget_info(dset, &oinfo) < 0)
+ TEST_ERROR
+ if(oinfo.meta_size.obj.index_size != (hsize_t)0)
+ TEST_ERROR
+ if(config == TEST_API_REOPEN_FILE) {
+ if(oinfo.meta_size.obj.heap_size != exp_meta_size) { printf("%llu\n", (long long unsigned)oinfo.meta_size.obj.heap_size);
+ TEST_ERROR }
+ } /* end if */
+ else
+ if((oinfo.meta_size.obj.heap_size != exp_meta_size)
+ && (oinfo.meta_size.obj.heap_size != (hsize_t)0))
+ TEST_ERROR
+ if(oinfo.meta_size.attr.index_size != (hsize_t)0)
+ TEST_ERROR
+ if(oinfo.meta_size.attr.index_size != (hsize_t)0)
+ TEST_ERROR
+
+ /* Close dataset */
+ if(H5Dclose(dset) < 0)
+ TEST_ERROR
+ dset = -1;
+
+ /* Delete dataset */
+ if(H5Ldelete(file, "vdset", H5P_DEFAULT) < 0)
+ TEST_ERROR
+
+ /* Close file */
+ if(H5Fclose(file) < 0)
+ TEST_ERROR
+ file = -1;
+ } /* end if */
+ else if(config == TEST_API_COPY_PLIST) {
+ /* Copy property list */
+ if((*ex_dcpl = H5Pcopy(dcpl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else if(config == TEST_API_ENCDEC_PLIST) {
+ size_t plist_buf_size;
+
+ /* Encode property list to plist_buf */
+ if(H5Pencode(dcpl, NULL, &plist_buf_size) < 0)
+ TEST_ERROR
+ if(NULL == (plist_buf = HDmalloc(plist_buf_size)))
+ TEST_ERROR
+ if(H5Pencode(dcpl, plist_buf, &plist_buf_size) < 0)
+ TEST_ERROR
+
+ /* Decode serialized property list to *ex_dcpl */
+ if((*ex_dcpl = H5Pdecode(plist_buf)) < 0)
+ TEST_ERROR
+
+ /* Free plist_buf */
+ HDfree(plist_buf);
+ plist_buf = NULL;
+ } /* end if */
+ else {
+ /* Simply copy the id to ex_dcpl and increment the ref count so ex_dcpl
+ * can be closed */
+ if(H5Iinc_ref(dcpl) < 0)
+ TEST_ERROR
+ *ex_dcpl = dcpl;
+ } /* end else */
+
+ /* Verify examination DCPL is equal to original DCPL. Do not compare the
+ * plist to itselt, and do not do the comparison if we reopened the file,
+ * because in that case the extent of the source dset will not be corrent.
+ */
+ if((*ex_dcpl != dcpl) && (config != TEST_API_REOPEN_FILE)) {
+ if((tri_ret = H5Pequal(dcpl, *ex_dcpl)) < 0)
+ TEST_ERROR
+ if(!tri_ret)
+ TEST_ERROR
+ } /* end if */
+
+ return 0;
+
+error:
+ H5E_BEGIN_TRY {
+ if(file >= 0)
+ (void)H5Fclose(file);
+ if(dset >= 0)
+ (void)H5Dclose(dset);
+ } H5E_END_TRY;
+ if(plist_buf)
+ HDfree(plist_buf);
+
+ return -1;
+} /* end test_api_get_ex_dcpl() */
+
+/* Main test function */
+static int
+test_api(test_api_config_t config, hid_t fapl)
+{
+ char filename[FILENAME_BUF_SIZE];
+ hid_t dcpl = -1; /* Dataset creation property list */
+ hid_t ex_dcpl = -1; /* Temporary dcpl for examination */
+ hid_t srcspace[4] = {-1, -1, -1, -1}; /* Source dataspaces */
+ hid_t vspace[LIST_DOUBLE_SIZE]; /* Virtual dset dataspaces */
+ const char *src_file[4] = {"src_file1", "src_file2.", "src_file3..", "src_file4..."}; /* Source file names (different lengths) */
+ const char *src_dset[4] = {"src_dset1....", "src_dset2.....", "src_dset3......", "src_dset4......."}; /* Source dataset names (different lengths) */
+ char tmp_filename[32];
+ char tmp_dsetname[32];
+ hsize_t dims[2] = {10, 20}; /* Data space current size */
+ hsize_t start[2]; /* Hyperslab start */
+ hsize_t stride[2]; /* Hyperslab stride */
+ hsize_t count[2]; /* Hyperslab count */
+ hsize_t block[2]; /* Hyperslab block */
+ hsize_t coord[10]; /* Point selection array */
+ size_t size_out;
+ herr_t ret;
+ unsigned i;
+
+ /* Initialize vspace */
+ for(i = 0; i < (unsigned)(sizeof(vspace) / sizeof(vspace[0])); i++)
+ vspace[i] = -1;
+
+ switch(config) {
+ case TEST_API_BASIC:
+ TESTING("virtual dataset API functions")
+ break;
+ case TEST_API_COPY_PLIST:
+ TESTING("virtual dataset API functions with copied plists")
+ break;
+ case TEST_API_ENCDEC_PLIST:
+ TESTING("virtual dataset API functions with encoded and decoded plists")
+ break;
+ case TEST_API_CREATE_DSET:
+ TESTING("virtual dataset create")
+ break;
+ case TEST_API_REOPEN_DSET:
+ TESTING("virtual dataset create with reopened dataset")
+ break;
+ case TEST_API_REOPEN_FILE:
+ TESTING("virtual dataset create with reopened file")
+ break;
+ case TEST_API_NTESTS:
+ default:
+ TEST_ERROR
+ } /* end switch */
+
+ h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
+
+ /* Create DCPL */
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ TEST_ERROR
+
+
+ /*
+ * Test 1: All - all selection
+ */
+ /* Create source dataspace */
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspace */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select all (should not be necessary, but just to be sure) */
+ if(H5Sselect_all(srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Sselect_all(vspace[0]) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[0], src_file[0], src_dset[0], srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Get examination DCPL */
+ if(test_api_get_ex_dcpl(config, fapl, dcpl, &ex_dcpl, vspace[0], filename, (hsize_t)68) < 0)
+ TEST_ERROR
+
+ /* Test H5Pget_virtual_count */
+ if(H5Pget_virtual_count(ex_dcpl, &size_out) < 0)
+ TEST_ERROR
+ if(size_out != (size_t)1)
+ TEST_ERROR
+
+ /* Check that the mapping in the DCPL is correct */
+ if(vds_check_mapping(ex_dcpl, (size_t)0, vspace[0], srcspace[0], src_file[0], src_dset[0]) < 0)
+ TEST_ERROR
+
+ /* Close */
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Pclose(ex_dcpl) < 0)
+ TEST_ERROR
+ ex_dcpl = -1;
+
+
+ /*
+ * Test 2: Hyper - hyper selection
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspace */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select regular hyperslab in source space */
+ start[0] = 2;
+ start[1] = 1;
+ stride[0] = 3;
+ stride[1] = 5;
+ count[0] = 2;
+ count[1] = 3;
+ block[0] = 2;
+ block[1] = 4;
+ if(H5Sselect_hyperslab(srcspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Select composite hyperslab in virtual space */
+ count[0] = 1;
+ count[1] = 1;
+ block[0] = 5;
+ block[1] = 6;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL, count, block) < 0)
+ TEST_ERROR
+ start[0] = 7;
+ start[1] = 0;
+ block[0] = 1;
+ block[1] = 18;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_OR, start, NULL, count, block) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[0], src_file[0], src_dset[0], srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Get examination DCPL */
+ if(test_api_get_ex_dcpl(config, fapl, dcpl, &ex_dcpl, vspace[0], filename, (hsize_t)212) < 0)
+ TEST_ERROR
+
+ /* Test H5Pget_virtual_count */
+ if(H5Pget_virtual_count(ex_dcpl, &size_out) < 0)
+ TEST_ERROR
+ if(size_out != (size_t)1)
+ TEST_ERROR
+
+ /* Check that the mapping in the DCPL is correct */
+ if(vds_check_mapping(ex_dcpl, (size_t)0, vspace[0], srcspace[0], src_file[0], src_dset[0]) < 0)
+ TEST_ERROR
+
+ /* Close */
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Pclose(ex_dcpl) < 0)
+ TEST_ERROR
+ ex_dcpl = -1;
+
+
+#ifdef VDS_POINT_SELECTIONS /* VDS does not currently support point selections */
+ /*
+ * Test 3: Point - point selection
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspace */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select points in source space */
+ coord[0] = 5;
+ coord[1] = 15;
+ coord[2] = 7;
+ coord[3] = 19;
+ coord[4] = 8;
+ coord[5] = 0;
+ coord[6] = 2;
+ coord[7] = 14;
+ coord[8] = 8;
+ coord[9] = 18;
+ if(H5Sselect_elements(srcspace[0], H5S_SELECT_SET, (size_t)5, coord) < 0)
+ TEST_ERROR
+
+ /* Select points in virtual space */
+ coord[0] = 3;
+ coord[1] = 12;
+ coord[2] = 7;
+ coord[3] = 11;
+ coord[4] = 4;
+ coord[5] = 9;
+ coord[6] = 7;
+ coord[7] = 11;
+ coord[8] = 5;
+ coord[9] = 5;
+ if(H5Sselect_elements(vspace[0], H5S_SELECT_SET, (size_t)5, coord) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[0], src_file[0], src_dset[0], srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Get examination DCPL */
+ if(test_api_get_ex_dcpl(config, fapl, dcpl, &ex_dcpl, vspace[0], filename, (hsize_t)0) < 0)
+ TEST_ERROR
+
+ /* Test H5Pget_virtual_count */
+ if(H5Pget_virtual_count(ex_dcpl, &size_out) < 0)
+ TEST_ERROR
+ if(size_out != (size_t)1)
+ TEST_ERROR
+
+ /* Check that the mapping in the DCPL is correct */
+ if(vds_check_mapping(ex_dcpl, (size_t)0, vspace[0], srcspace[0], src_file[0], src_dset[0]) < 0)
+ TEST_ERROR
+
+ /* Close */
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Pclose(ex_dcpl) < 0)
+ TEST_ERROR
+ ex_dcpl = -1;
+
+
+ /*
+ * Test 4: Point - hyper selection
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspace */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select hyperslab in source space */
+ start[0] = 2;
+ start[1] = 7;
+ count[0] = 1;
+ count[1] = 1;
+ block[0] = 1;
+ block[1] = 5;
+ if(H5Sselect_hyperslab(srcspace[0], H5S_SELECT_SET, start, NULL, count, block) < 0)
+ TEST_ERROR
+
+ /* Select points in virtual space */
+ coord[0] = 1;
+ coord[1] = 1;
+ coord[2] = 4;
+ coord[3] = 17;
+ coord[4] = 3;
+ coord[5] = 9;
+ coord[6] = 5;
+ coord[7] = 13;
+ coord[8] = 7;
+ coord[9] = 16;
+ if(H5Sselect_elements(vspace[0], H5S_SELECT_SET, (size_t)5, coord) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[0], src_file[0], src_dset[0], srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Get examination DCPL */
+ if(test_api_get_ex_dcpl(config, fapl, dcpl, &ex_dcpl, vspace[0], filename, (hsize_t)0) < 0)
+ TEST_ERROR
+
+ /* Test H5Pget_virtual_count */
+ if(H5Pget_virtual_count(ex_dcpl, &size_out) < 0)
+ TEST_ERROR
+ if(size_out != (size_t)1)
+ TEST_ERROR
+
+ /* Check that the mapping in the DCPL is correct */
+ if(vds_check_mapping(ex_dcpl, (size_t)0, vspace[0], srcspace[0], src_file[0], src_dset[0]) < 0)
+ TEST_ERROR
+
+ /* Close */
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Pclose(ex_dcpl) < 0)
+ TEST_ERROR
+ ex_dcpl = -1;
+
+
+ /*
+ * Test 5: All previous mappings together
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create dataspaces */
+ for(i = 0; i < 4; i++) {
+ /* Create source dataspace */
+ if((srcspace[i] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspace */
+ if((vspace[i] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+ } /* end for */
+
+ /* Select all (should not be necessary, but just to be sure) */
+ if(H5Sselect_all(srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Sselect_all(vspace[0]) < 0)
+ TEST_ERROR
+
+ /* Select regular hyperslab in source space */
+ start[0] = 2;
+ start[1] = 1;
+ stride[0] = 3;
+ stride[1] = 5;
+ count[0] = 2;
+ count[1] = 3;
+ block[0] = 2;
+ block[1] = 4;
+ if(H5Sselect_hyperslab(srcspace[1], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Select composite hyperslab in virtual space */
+ count[0] = 1;
+ count[1] = 1;
+ block[0] = 5;
+ block[1] = 6;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, NULL, count, block) < 0)
+ TEST_ERROR
+ start[0] = 7;
+ start[1] = 0;
+ block[0] = 1;
+ block[1] = 18;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_OR, start, NULL, count, block) < 0)
+ TEST_ERROR
+
+ /* Select points in source space */
+ coord[0] = 5;
+ coord[1] = 15;
+ coord[2] = 7;
+ coord[3] = 19;
+ coord[4] = 8;
+ coord[5] = 0;
+ coord[6] = 2;
+ coord[7] = 14;
+ coord[8] = 8;
+ coord[9] = 18;
+ if(H5Sselect_elements(srcspace[2], H5S_SELECT_SET, (size_t)5, coord) < 0)
+ TEST_ERROR
+
+ /* Select points in virtual space */
+ coord[0] = 3;
+ coord[1] = 12;
+ coord[2] = 7;
+ coord[3] = 11;
+ coord[4] = 4;
+ coord[5] = 9;
+ coord[6] = 7;
+ coord[7] = 11;
+ coord[8] = 5;
+ coord[9] = 5;
+ if(H5Sselect_elements(vspace[2], H5S_SELECT_SET, (size_t)5, coord) < 0)
+ TEST_ERROR
+
+ /* Select hyperslab in source space */
+ start[0] = 2;
+ start[1] = 7;
+ count[0] = 1;
+ count[1] = 1;
+ block[0] = 1;
+ block[1] = 5;
+ if(H5Sselect_hyperslab(srcspace[3], H5S_SELECT_SET, start, NULL, count, block) < 0)
+ TEST_ERROR
+
+ /* Select points in virtual space */
+ coord[0] = 1;
+ coord[1] = 1;
+ coord[2] = 4;
+ coord[3] = 17;
+ coord[4] = 3;
+ coord[5] = 9;
+ coord[6] = 5;
+ coord[7] = 13;
+ coord[8] = 7;
+ coord[9] = 16;
+ if(H5Sselect_elements(vspace[3], H5S_SELECT_SET, (size_t)5, coord) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mappings */
+ for(i = 0; i < 4; i++)
+ if(H5Pset_virtual(dcpl, vspace[i], src_file[i], src_dset[i], srcspace[i]) < 0)
+ TEST_ERROR
+
+ /* Get examination DCPL */
+ if(test_api_get_ex_dcpl(config, fapl, dcpl, &ex_dcpl, vspace[0], filename, (hsize_t)0) < 0)
+ TEST_ERROR
+
+ /* Test H5Pget_virtual_count */
+ if(H5Pget_virtual_count(ex_dcpl, &size_out) < 0)
+ TEST_ERROR
+ if(size_out != (size_t)4)
+ TEST_ERROR
+
+ /* Check that the mappings in the DCPL are correct */
+ for(i = 0; i < 4; i++)
+ if(vds_check_mapping(ex_dcpl, (size_t)i, vspace[i], srcspace[i], src_file[i], src_dset[i]) < 0)
+ TEST_ERROR
+
+ /* Close */
+ for(i = 0; i < 4; i++) {
+ if(H5Sclose(srcspace[i]) < 0)
+ TEST_ERROR
+ srcspace[i] = -1;
+ if(H5Sclose(vspace[i]) < 0)
+ TEST_ERROR
+ vspace[i] = -1;
+ } /* end for */
+ if(H5Pclose(ex_dcpl) < 0)
+ TEST_ERROR
+ ex_dcpl = -1;
+
+#else /* VDS_POINT_SELECTIONS */
+
+ /*
+ * Test 3: Verify point selections fail
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspace */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select points in source space */
+ coord[0] = 5;
+ coord[1] = 15;
+ coord[2] = 7;
+ coord[3] = 19;
+ coord[4] = 8;
+ coord[5] = 0;
+ coord[6] = 2;
+ coord[7] = 14;
+ coord[8] = 8;
+ coord[9] = 18;
+ if(H5Sselect_elements(srcspace[0], H5S_SELECT_SET, (size_t)5, coord) < 0)
+ TEST_ERROR
+
+ /* Select points in virtual space */
+ coord[0] = 3;
+ coord[1] = 12;
+ coord[2] = 7;
+ coord[3] = 11;
+ coord[4] = 4;
+ coord[5] = 9;
+ coord[6] = 7;
+ coord[7] = 11;
+ coord[8] = 5;
+ coord[9] = 5;
+ if(H5Sselect_elements(vspace[0], H5S_SELECT_SET, (size_t)5, coord) < 0)
+ TEST_ERROR
+
+ /* Attempt to add virtual layout mapping */
+ H5E_BEGIN_TRY {
+ ret = H5Pset_virtual(dcpl, vspace[0], src_file[0], src_dset[0], srcspace[0]);
+ } H5E_END_TRY
+ if(ret >= 0)
+ TEST_ERROR
+#endif /* VDS_POINT_SELECTIONS */
+
+
+ /*
+ * Test 6: Enough Selections to trigger doubling of mapping list
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[0] = 1;
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select all in source space (should not be necessary, but just to be sure) */
+ if(H5Sselect_all(srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Init virtual space extent */
+ dims[0] = LIST_DOUBLE_SIZE;
+
+ /* Init hyperslab values */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 1;
+ count[1] = 1;
+ block[0] = 1;
+ block[1] = 20;
+
+ /* Build virtual layout */
+ for(i = 0; i < LIST_DOUBLE_SIZE; i++) {
+ /* Create virtual dataspace */
+ if((vspace[i] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select row in virual dataspace */
+ start[0] = (hsize_t)i;
+ if(H5Sselect_hyperslab(vspace[i], H5S_SELECT_SET, start, NULL, count, block) < 0)
+ TEST_ERROR
+
+ /* Create file and dataset names */
+ (void)HDsnprintf(tmp_filename, sizeof(tmp_filename), "src_file%u", i);
+ tmp_filename[sizeof(tmp_filename) - 1] = '\0';
+ (void)HDsnprintf(tmp_dsetname, sizeof(tmp_dsetname), "src_dset%u", i);
+ tmp_dsetname[sizeof(tmp_dsetname) - 1] = '\0';
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[i], tmp_filename, tmp_dsetname, srcspace[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get examination DCPL */
+ if(test_api_get_ex_dcpl(config, fapl, dcpl, &ex_dcpl, vspace[0], filename, (hsize_t)696) < 0)
+ TEST_ERROR
+
+ /* Test H5Pget_virtual_count */
+ if(H5Pget_virtual_count(ex_dcpl, &size_out) < 0)
+ TEST_ERROR
+ if(size_out != (size_t)LIST_DOUBLE_SIZE)
+ TEST_ERROR
+
+ /* Verify virtual layout */
+ for(i = 0; i < LIST_DOUBLE_SIZE; i++) {
+ /* Generate source file name */
+ (void)HDsnprintf(tmp_filename, sizeof(tmp_filename), "src_file%u", i);
+ tmp_filename[sizeof(tmp_filename) - 1] = '\0';
+
+ /* Generate source dset name */
+ (void)HDsnprintf(tmp_dsetname, sizeof(tmp_dsetname), "src_dset%u", i);
+ tmp_dsetname[sizeof(tmp_dsetname) - 1] = '\0';
+
+ /* Check that the mapping in the DCPL is correct */
+ if(vds_check_mapping(ex_dcpl, (size_t)i, vspace[i], srcspace[0], tmp_filename, tmp_dsetname) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Close */
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ for(i = 0; i < LIST_DOUBLE_SIZE; i++) {
+ if(H5Sclose(vspace[i]) < 0)
+ TEST_ERROR
+ vspace[i] = -1;
+ } /* end for */
+ if(H5Pclose(ex_dcpl) < 0)
+ TEST_ERROR
+ ex_dcpl = -1;
+
+
+ /*
+ * Test 7: Empty VDS
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspace */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select all (should not be necessary, but just to be sure) */
+ if(H5Sselect_all(vspace[0]) < 0)
+ TEST_ERROR
+
+ /* Get examination DCPL */
+ if(test_api_get_ex_dcpl(config, fapl, dcpl, &ex_dcpl, vspace[0], filename, (hsize_t)0) < 0)
+ TEST_ERROR
+
+ /* Test H5Pget_virtual_count */
+ if(H5Pget_virtual_count(ex_dcpl, &size_out) < 0)
+ TEST_ERROR
+ if(size_out != (size_t)0)
+ TEST_ERROR
+
+ /* Close */
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Pclose(ex_dcpl) < 0)
+ TEST_ERROR
+ ex_dcpl = -1;
+
+
+ /* Close */
+ if(H5Pclose(dcpl) < 0)
+ TEST_ERROR
+ dcpl = -1;
+
+ PASSED();
+ return 0;
+
+error:
+ H5E_BEGIN_TRY {
+ for(i = 0; i < (sizeof(srcspace) / sizeof(srcspace[0])); i++) {
+ if(srcspace[i] >= 0)
+ (void)H5Sclose(srcspace[i]);
+ } /* end for */
+ for(i = 0; i < (sizeof(vspace) / sizeof(vspace[0])); i++) {
+ if(vspace[i] >= 0)
+ (void)H5Sclose(vspace[i]);
+ } /* end for */
+ if(dcpl >= 0)
+ (void)H5Pclose(dcpl);
+ if(ex_dcpl >= 0)
+ (void)H5Pclose(ex_dcpl);
+ } H5E_END_TRY;
+
+ return 1;
+} /* end test_api() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: test_basic_io
+ *
+ * Purpose: Tests VDS I/O without unlimited selections or
+ * pattern-matching file/dataset strings
+ *
+ * Return: Success: 0
+ *
+ * Failure: number of errors
+ *
+ * Programmer: Neil Fortner
+ * Tuesday, March 3, 2015
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_basic_io(unsigned config, hid_t fapl)
+{
+ char srcfilename[FILENAME_BUF_SIZE];
+ char srcfilename_map[FILENAME_BUF_SIZE];
+ char vfilename[FILENAME_BUF_SIZE];
+ char vfilename2[FILENAME_BUF_SIZE];
+ char srcfilenamepct[FILENAME_BUF_SIZE];
+ char srcfilenamepct_map[FILENAME_BUF_SIZE];
+ const char *srcfilenamepct_map_orig = "vds%%_src";
+ hid_t srcfile[4] = {-1, -1, -1, -1}; /* Files with source dsets */
+ hid_t vfile = -1; /* File with virtual dset */
+ hid_t vfile2 = -1; /* File with copied virtual dset */
+ hid_t dcpl = -1; /* Dataset creation property list */
+ hid_t srcspace[4] = {-1, -1, -1, -1}; /* Source dataspaces */
+ hid_t vspace[4] = {-1, -1, -1, -1}; /* Virtual dset dataspaces */
+ hid_t memspace = -1; /* Memory dataspace */
+ hid_t srcdset[4] = {-1, -1, -1, -1}; /* Source datsets */
+ hid_t vdset = -1; /* Virtual dataset */
+ hsize_t dims[4] = {10, 26, 0, 0}; /* Data space current size */
+ hsize_t start[4]; /* Hyperslab start */
+ hsize_t stride[4]; /* Hyperslab stride */
+ hsize_t count[4]; /* Hyperslab count */
+ hsize_t block[4]; /* Hyperslab block */
+ hssize_t offset[2] = {0, 0}; /* Selection offset */
+ int buf[10][26]; /* Write and expected read buffer */
+ int rbuf[10][26]; /* Read buffer */
+ int rbuf99[9][9]; /* 9x9 Read buffer */
+ int evbuf[10][26]; /* Expected VDS "buffer" */
+ int erbuf[10][26]; /* Expected read buffer */
+ int fill = -1; /* Fill value */
+ herr_t ret; /* Generic return value */
+ int i, j;
+
+ TESTING("basic virtual dataset I/O")
+
+ h5_fixname(FILENAME[0], fapl, vfilename, sizeof vfilename);
+ h5_fixname(FILENAME[1], fapl, vfilename2, sizeof vfilename2);
+ h5_fixname(FILENAME[2], fapl, srcfilename, sizeof srcfilename);
+ h5_fixname_printf(FILENAME[2], fapl, srcfilename_map, sizeof srcfilename_map);
+ h5_fixname(FILENAME[4], fapl, srcfilenamepct, sizeof srcfilenamepct);
+ h5_fixname_printf(srcfilenamepct_map_orig, fapl, srcfilenamepct_map, sizeof srcfilenamepct_map);
+
+ /* Create DCPL */
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ TEST_ERROR
+
+ /* Set fill value */
+ if(H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fill) < 0)
+ TEST_ERROR
+
+ /*
+ * Test 1: All - all selection
+ */
+ /* Create source dataspace */
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspace */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select all (should not be necessary, but just to be sure) */
+ if(H5Sselect_all(srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Sselect_all(vspace[0]) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset", srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source dataset */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] = (i * (int)(sizeof(buf[0]) / sizeof(buf[0][0]))) + j;
+
+ /* Write data directly to source dataset */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Close srcdset and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data through virtual dataset */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ if(H5Dread(vdset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != buf[i][j])
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write data through virtual dataset */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Reopen srcdset and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDONLY, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "src_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data directly from source dataset */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ if(H5Dread(srcdset[0], H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != buf[i][j])
+ TEST_ERROR
+
+ /* Close */
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+
+
+ /*
+ * Test 2: 2 Source datasets, hyperslab virtual mappings, '%' in source
+ * dataset name, also test H5Ocopy()
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[1] = 13;
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select all in source space (should not be necessary, but just to be sure)
+ */
+ if(H5Sselect_all(srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual spaces */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+ start[1] = 13;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mappings */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "%%src_dset1", srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset2%%", srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Reset dims */
+ dims[1] = 26;
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "%src_dset1", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset2%", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] = (i * (int)(sizeof(buf[0]) / sizeof(buf[0][0]))) + j;
+
+ /* Write data directly to source datasets */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, vspace[0], H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, vspace[1], H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data through virtual dataset */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ if(H5Dread(vdset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != buf[i][j])
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write data through virtual dataset */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Reopen srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "%src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset2%", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data directly from source datasets */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ if(H5Dread(srcdset[0], H5T_NATIVE_INT, vspace[0], H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+ if(H5Dread(srcdset[1], H5T_NATIVE_INT, vspace[1], H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != buf[i][j])
+ TEST_ERROR
+
+ /* Test H5Ocopy() to same file */
+ /* Copy virtual dataset */
+ if(H5Ocopy(vfile, "v_dset", vfile, "v_dset2", H5P_DEFAULT, H5P_DEFAULT) < 0)
+ TEST_ERROR
+
+ /* Close v_dset */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write data directly to source datasets */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, vspace[0], H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, vspace[1], H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Open v_dset2 */
+ if((vdset = H5Dopen2(vfile, "v_dset2", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Read data through copied virtual dataset */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ if(H5Dread(vdset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != buf[i][j])
+ TEST_ERROR
+
+ /* Reopen srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "%src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset2%", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Only copy to a different file if the source datasets are in a different
+ * file */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ /* Close v_dset2 */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+
+ /* Create file to copy virtual dataset to */
+ if((vfile2 = H5Fcreate(vfilename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Copy virtual dataset */
+ if(H5Ocopy(vfile, "v_dset", vfile2, "v_dset3", H5P_DEFAULT, H5P_DEFAULT) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write data directly to source datasets */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, vspace[0], H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, vspace[1], H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen copied virtual file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile2) < 0)
+ TEST_ERROR
+ vfile2 = -1;
+ if((vfile2 = H5Fopen(vfilename2, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Open v_dset3 */
+ if((vdset = H5Dopen2(vfile2, "v_dset3", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Read data through copied virtual dataset */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ if(H5Dread(vdset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != buf[i][j])
+ TEST_ERROR
+
+ /* Reopen srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDONLY, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "%src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset2%", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Close copied virtual file */
+ if(H5Fclose(vfile2) < 0)
+ TEST_ERROR
+ vfile2 = -1;
+ } /* end if */
+
+ /* Close */
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+
+
+ /*
+ * Test 3: 2 Source datasets, hyperslab virtual mappings with offsets
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[1] = 13;
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select all in source space (should not be necessary, but just to be sure)
+ */
+ if(H5Sselect_all(srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual spaces */
+ start[0] = 0;
+ start[1] = 3;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mappings */
+ offset[1] = -3;
+ if(H5Soffset_simple(vspace[0], offset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "%%src_dset1", srcspace[0]) < 0)
+ TEST_ERROR
+ offset[1] = 10;
+ if(H5Soffset_simple(vspace[0], offset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset2%%", srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Reset dims */
+ dims[1] = 26;
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "%src_dset1", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset2%", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] = (i * (int)(sizeof(buf[0]) / sizeof(buf[0][0]))) + j;
+
+ /* Write data directly to source datasets */
+ offset[1] = -3;
+ if(H5Soffset_simple(vspace[0], offset) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, vspace[0], H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ offset[1] = 10;
+ if(H5Soffset_simple(vspace[0], offset) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, vspace[0], H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data through virtual dataset */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ if(H5Dread(vdset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != buf[i][j])
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write data through virtual dataset */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Reopen srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDONLY, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "%src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset2%", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data directly from source datasets */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ offset[1] = -3;
+ if(H5Soffset_simple(vspace[0], offset) < 0)
+ TEST_ERROR
+ if(H5Dread(srcdset[0], H5T_NATIVE_INT, vspace[0], H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+ offset[1] = 10;
+ if(H5Soffset_simple(vspace[0], offset) < 0)
+ TEST_ERROR
+ if(H5Dread(srcdset[1], H5T_NATIVE_INT, vspace[0], H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != buf[i][j])
+ TEST_ERROR
+
+ /* Close */
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+
+
+ /*
+ * Test 4: 2 Source datasets, hyperslab virtual mappings on one mapping at a
+ * time, '%' in source file name
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[1] = 13;
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select all in source space (should not be necessary, but just to be sure)
+ */
+ if(H5Sselect_all(srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual spaces */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+ start[1] = 13;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mappings */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilenamepct_map : ".", "src_dset1", srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilenamepct_map : ".", "src_dset2", srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Reset dims */
+ dims[1] = 26;
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilenamepct, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset1", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset2", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] = (i * (int)(sizeof(buf[0]) / sizeof(buf[0][0]))) + j;
+
+ /* Write data directly to source datasets */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, vspace[0], H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, vspace[1], H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read first source dataset through virtual dataset */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ if(H5Dread(vdset, H5T_NATIVE_INT, vspace[0], vspace[0], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != (j < (int)(sizeof(buf[0]) / sizeof(buf[0][0]) / 2)
+ ? buf[i][j] : 0))
+ TEST_ERROR
+
+ /* Read second source dataset through virtual dataset */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ if(H5Dread(vdset, H5T_NATIVE_INT, vspace[1], vspace[1], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != (j < (int)(sizeof(buf[0]) / sizeof(buf[0][0]) / 2)
+ ? 0 : buf[i][j]))
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write first source dataset through virtual dataset */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, vspace[0], vspace[0], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write second source dataset through virtual dataset */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, vspace[1], vspace[1], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Reopen srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilenamepct, H5F_ACC_RDONLY, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset2", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data directly from source datasets */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ if(H5Dread(srcdset[0], H5T_NATIVE_INT, vspace[0], H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+ if(H5Dread(srcdset[1], H5T_NATIVE_INT, vspace[1], H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != (j < (int)(sizeof(buf[0]) / sizeof(buf[0][0]) / 2)
+ ? (buf[i][j] - (int)(sizeof(buf) / sizeof(buf[0][0])))
+ : buf[i][j]))
+ TEST_ERROR
+
+ /* Close */
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+
+
+ /*
+ * Test 5: 2 Source datasets, hyperslab virtual mappings and selections
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspaces */
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+ if((srcspace[1] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in source space */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 10;
+ count[1] = 13;
+ if(H5Sselect_hyperslab(srcspace[0], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[1] = 13;
+ if(H5Sselect_hyperslab(srcspace[1], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual spaces */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 5;
+ count[1] = 26;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[0] = 5;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mappings */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset1", srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset2", srcspace[1]) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset1", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset2", H5T_NATIVE_INT, srcspace[1], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] = (i * (int)(sizeof(buf[0]) / sizeof(buf[0][0]))) + j;
+
+ /* Write data directly to source datasets */
+ /* Write first dataset */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update evbuf */
+ for(i = 0; i < 5; i++) {
+ for(j = 0; j < 13; j++)
+ evbuf[i][j] = buf[2 * i][j];
+ for(/* j = 13 */; j < 26; j++)
+ evbuf[i][j] = buf[2 * i + 1][j - 13];
+ } /* end for */
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write second dataset */
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update evbuf */
+ for(i = 0; i < 5; i++) {
+ for(j = 0; j < 13; j++)
+ evbuf[i + 5][j] = buf[2 * i][j + 13];
+ for(/* j = 13 */; j < 26; j++)
+ evbuf[i + 5][j] = buf[2 * i + 1][j];
+ } /* end for */
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data through virtual dataset by hyperslab */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Read first slice */
+ if(H5Dread(vdset, H5T_NATIVE_INT, vspace[0], srcspace[0], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++) {
+ for(j = 0; j < 13; j++)
+ erbuf[i][j] = evbuf[2 * i][j];
+ for(/* j = 13 */; j < 26; j++)
+ erbuf[i][j] = evbuf[2 * i + 1][j - 13];
+ } /* end for */
+
+ /* Read second slice */
+ if(H5Dread(vdset, H5T_NATIVE_INT, vspace[1], srcspace[1], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++) {
+ for(j = 0; j < 13; j++)
+ erbuf[i + 5][j] = evbuf[2 * i][j + 13];
+ for(/* j = 13 */; j < 26; j++)
+ erbuf[i + 5][j] = evbuf[2 * i + 1][j];
+ } /* end for */
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write data through virtual dataset */
+ /* Write first slice */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, vspace[0], srcspace[0], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update evbuf */
+ for(i = 0; i < 5; i++) {
+ for(j = 0; j < 13; j++)
+ evbuf[2 * i][j] = buf[i][j];
+ for(/* j = 13 */; j < 26; j++)
+ evbuf[2 * i + 1][j - 13] = buf[i][j];
+ } /* end for */
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write second slice */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, vspace[1], srcspace[1], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update evbuf */
+ for(i = 0; i < 5; i++) {
+ for(j = 0; j < 13; j++)
+ evbuf[2 * i][j + 13] = buf[i + 5][j];
+ for(/* j = 13 */; j < 26; j++)
+ evbuf[2 * i + 1][j] = buf[i + 5][j];
+ } /* end for */
+
+ /* Reopen srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDONLY, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset2", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data directly from source datasets */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Read first dataset */
+ if(H5Dread(srcdset[0], H5T_NATIVE_INT, srcspace[0], srcspace[0], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++) {
+ for(j = 0; j < 13; j++)
+ erbuf[2 * i][j] = evbuf[i][j];
+ for(/* j = 13 */; j < 26; j++)
+ erbuf[2 * i + 1][j - 13] = evbuf[i][j];
+ } /* end for */
+
+ /* Read second dataset */
+ if(H5Dread(srcdset[1], H5T_NATIVE_INT, srcspace[1], srcspace[1], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++) {
+ for(j = 0; j < 13; j++)
+ erbuf[2 * i][j + 13] = evbuf[i + 5][j];
+ for(/* j = 13 */; j < 26; j++)
+ erbuf[2 * i + 1][j] = evbuf[i + 5][j];
+ } /* end for */
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Close */
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(srcspace[1]) < 0)
+ TEST_ERROR
+ srcspace[1] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+
+
+ /*
+ * Test 6: 2 Source datasets, checkerboard/stripe pattern to trigger
+ * sequence list refresh internally
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create memory dataspace */
+ if((memspace = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ dims[1] = 52;
+ if((vspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace and file space for second operation (srcspace[1])
+ */
+ if((srcspace[0] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+ if((srcspace[1] = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Reset dims */
+ dims[1] = 26;
+
+ /* Select hyperslabs (stripe) in source space and file space for second
+ * operation (srcspace[1]) */
+ start[0] = 0;
+ start[1] = 0;
+ stride[0] = 1;
+ stride[1] = 2;
+ count[0] = 1;
+ count[1] = 26;
+ block[0] = 10;
+ block[1] = 1;
+ if(H5Sselect_hyperslab(srcspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 1;
+ if(H5Sselect_hyperslab(srcspace[1], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs (checkerboard) in virtual spaces */
+ start[0] = 0;
+ start[1] = 0;
+ stride[0] = 2;
+ stride[1] = 2;
+ count[0] = 5;
+ count[1] = 26;
+ block[0] = 1;
+ block[1] = 1;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[0] = 1;
+ start[1] = 1;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_OR, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[0] = 0;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[0] = 1;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_OR, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mappings */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset1", srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset2", srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset1", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset2", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] = (i * (int)(sizeof(buf[0]) / sizeof(buf[0][0]))) + j;
+
+ /* Write data directly to source datasets */
+ /* Write first dataset */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, srcspace[0], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i += 2)
+ for(j = 0; j < 26; j++)
+ erbuf[i][j] = buf[i][j];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write second dataset */
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, srcspace[0], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 1; i < 10; i += 2)
+ for(j = 0; j < 26; j++)
+ erbuf[i][j] = buf[i][j];
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data through virtual dataset by hyperslab */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Read first stripe pattern */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, srcspace[0], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Read second stripe pattern */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, srcspace[1], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i += 2)
+ for(j = 0; j < 26; j++) {
+ erbuf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+ erbuf[i + 1][j] -= (int)(sizeof(buf) / sizeof(buf[0][0]));
+ } /* end for */
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write data through virtual dataset */
+ /* Write first slice */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, memspace, srcspace[0], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i += 2)
+ for(j = 0; j < 26; j++)
+ erbuf[i][j] = buf[i][j];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write second slice */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, memspace, srcspace[1], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 1; i < 10; i += 2)
+ for(j = 0; j < 26; j++)
+ erbuf[i][j] = buf[i][j];
+
+ /* Reopen srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDONLY, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset2", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data directly from source datasets */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Read first dataset */
+ if(H5Dread(srcdset[0], H5T_NATIVE_INT, memspace, srcspace[0], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i += 2)
+ for(j = 0; j < 26; j++) {
+ erbuf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+ erbuf[i + 1][j] -= (int)(sizeof(buf) / sizeof(buf[0][0]));
+ } /* end for */
+
+ /* Read second dataset */
+ if(H5Dread(srcdset[1], H5T_NATIVE_INT, memspace, srcspace[0], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Close */
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(srcspace[1]) < 0)
+ TEST_ERROR
+ srcspace[1] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+ if(H5Sclose(memspace) < 0)
+ TEST_ERROR
+ memspace = -1;
+
+
+ /*
+ * Test 7: 1 Source dataset, two mappings, 4 dimensional virtual dataset
+ * and 3 dimensional source dataset
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create memory dataspace */
+ if((memspace = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ dims[0] = 3;
+ dims[1] = 3;
+ dims[2] = 3;
+ dims[3] = 3;
+ if((vspace[0] = H5Screate_simple(4, dims, NULL)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(4, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspaces */
+ dims[0] = 2;
+ dims[1] = 4;
+ dims[2] = 4;
+ if((srcspace[0] = H5Screate_simple(3, dims, NULL)) < 0)
+ TEST_ERROR
+ if((srcspace[1] = H5Screate_simple(3, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Reset dims */
+ dims[0] = 10;
+ dims[1] = 26;
+
+ /* Select hyperslabs (stripes) in source spaces */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ stride[0] = 1;
+ stride[1] = 2;
+ stride[2] = 1;
+ count[0] = 1;
+ count[1] = 2;
+ count[2] = 1;
+ block[0] = 2;
+ block[1] = 1;
+ block[2] = 4;
+ if(H5Sselect_hyperslab(srcspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 1;
+ if(H5Sselect_hyperslab(srcspace[1], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs (corners) in first virtual space */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ start[3] = 0;
+ stride[0] = 2;
+ stride[1] = 2;
+ stride[2] = 2;
+ stride[3] = 2;
+ count[0] = 2;
+ count[1] = 2;
+ count[2] = 2;
+ count[3] = 2;
+ block[0] = 1;
+ block[1] = 1;
+ block[2] = 1;
+ block[3] = 1;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs ("+" pattern) in second virtual space */
+ start[0] = 1;
+ start[1] = 1;
+ start[2] = 0;
+ start[3] = 0;
+ stride[0] = 2;
+ stride[1] = 2;
+ stride[2] = 2;
+ stride[3] = 2;
+ count[0] = 1;
+ count[1] = 1;
+ count[2] = 2;
+ count[3] = 2;
+ block[0] = 1;
+ block[1] = 1;
+ block[2] = 1;
+ block[3] = 1;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 0;
+ start[2] = 1;
+ count[1] = 2;
+ count[2] = 1;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_OR, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[0] = 0;
+ start[1] = 1;
+ count[0] = 2;
+ count[1] = 1;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_OR, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[0] = 1;
+ count[0] = 1;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_OR, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 0;
+ start[3] = 1;
+ count[1] = 2;
+ count[3] = 1;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_OR, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mappings */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset1", srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset1", srcspace[1]) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source dataset */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset1", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] = (i * (int)(sizeof(buf[0]) / sizeof(buf[0][0]))) + j;
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 2;
+ count[1] = 16;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Write data directly to source dataset */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Close srcdset and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 9;
+ count[1] = 3;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset by hyperslab */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select stripe */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ start[3] = 0;
+ count[0] = 3;
+ count[1] = 3;
+ count[2] = 1;
+ count[3] = 3;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Read first stripe pattern */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, vspace[0], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ HDmemset(erbuf, 0, sizeof(erbuf));
+ for(i = 0; i < 9; i++)
+ for(j = 0; j < 3; j++)
+ erbuf[i][j] = fill;
+ erbuf[0][0] = buf[0][0];
+ erbuf[0][2] = buf[0][1];
+ erbuf[2][0] = buf[0][8];
+ erbuf[2][2] = buf[0][9];
+ erbuf[6][0] = buf[1][0];
+ erbuf[6][2] = buf[1][1];
+ erbuf[8][0] = buf[1][8];
+ erbuf[8][2] = buf[1][9];
+ erbuf[4][0] = buf[0][13];
+ erbuf[4][2] = buf[0][14];
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select stripe */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 1;
+ start[3] = 0;
+ count[0] = 3;
+ count[1] = 3;
+ count[2] = 1;
+ count[3] = 3;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 3;
+ count[0] = 9;
+ count[1] = 3;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Read second stripe pattern */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, vspace[0], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 9; i++)
+ for(j = 3; j < 6; j++)
+ erbuf[i][j] = fill;
+ erbuf[1][3] = buf[0][4];
+ erbuf[1][5] = buf[0][5];
+ erbuf[3][3] = buf[0][6];
+ erbuf[3][4] = buf[0][7];
+ erbuf[3][5] = buf[0][12];
+ erbuf[4][3] = buf[0][15];
+ erbuf[4][5] = buf[1][4];
+ erbuf[5][3] = buf[1][7];
+ erbuf[5][4] = buf[1][12];
+ erbuf[5][5] = buf[1][13];
+ erbuf[7][3] = buf[1][14];
+ erbuf[7][5] = buf[1][15];
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if((j >= 3) && (j < 6)) {
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select stripe */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 2;
+ start[3] = 0;
+ count[0] = 3;
+ count[1] = 3;
+ count[2] = 1;
+ count[3] = 3;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 6;
+ count[0] = 9;
+ count[1] = 3;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Read third stripe pattern */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, vspace[0], H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 9; i++)
+ for(j = 6; j < 9; j++)
+ erbuf[i][j] = fill;
+ erbuf[0][6] = buf[0][2];
+ erbuf[0][8] = buf[0][3];
+ erbuf[2][6] = buf[0][10];
+ erbuf[2][8] = buf[0][11];
+ erbuf[6][6] = buf[1][2];
+ erbuf[6][8] = buf[1][3];
+ erbuf[8][6] = buf[1][10];
+ erbuf[8][8] = buf[1][11];
+ erbuf[4][6] = buf[1][5];
+ erbuf[4][8] = buf[1][6];
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if((j >= 6) && (j < 9)) {
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+
+ /* Now read entire VDS */
+ /* Set memory space extent to 9x9, select all in order to reach part of the
+ * code in H5S_select_subtract() */
+ dims[0] = 9;
+ dims[1] = 9;
+ if(H5Sset_extent_simple(memspace, 2, dims, NULL) < 0)
+ TEST_ERROR
+ if(H5Sselect_all(memspace) < 0)
+ TEST_ERROR
+
+ /* Read third stripe pattern */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf99[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(rbuf99) / sizeof(rbuf99[0])); i++)
+ for(j = 0; j < (int)(sizeof(rbuf99[0]) / sizeof(rbuf99[0][0])); j++)
+ if(rbuf99[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Write data through virtual dataset by hyperslab */
+ /* Select stripe (only select mapped elements) */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ start[3] = 0;
+ stride[0] = 2;
+ stride[1] = 2;
+ stride[2] = 1;
+ stride[3] = 2;
+ count[0] = 2;
+ count[1] = 2;
+ count[2] = 1;
+ count[3] = 2;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride ,count, NULL) < 0)
+ TEST_ERROR
+ start[0] = 1;
+ start[1] = 1;
+ start[2] = 0;
+ start[3] = 0;
+ stride[0] = 1;
+ stride[1] = 1;
+ stride[2] = 1;
+ stride[3] = 2;
+ count[0] = 1;
+ count[1] = 1;
+ count[2] = 1;
+ count[3] = 2;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_OR, start, stride ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Reset extent of memspace, select hyperslab */
+ dims[0] = 10;
+ dims[1] = 26;
+ if(H5Sset_extent_simple(memspace, 2, dims, NULL) < 0)
+ TEST_ERROR
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 1;
+ count[1] = 10;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Write data through virtual dataset by hyperslab */
+ /* Write first stripe pattern */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, memspace, vspace[0], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ HDmemset(erbuf, 0, sizeof(erbuf));
+ erbuf[0][0] = buf[0][0];
+ erbuf[0][1] = buf[0][1];
+ erbuf[0][8] = buf[0][2];
+ erbuf[0][9] = buf[0][3];
+ erbuf[1][0] = buf[0][6];
+ erbuf[1][1] = buf[0][7];
+ erbuf[1][8] = buf[0][8];
+ erbuf[1][9] = buf[0][9];
+ erbuf[0][13] = buf[0][4];
+ erbuf[0][14] = buf[0][5];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Select stripe (only select mapped elements) */
+ start[0] = 0;
+ start[1] = 1;
+ start[2] = 1;
+ start[3] = 0;
+ stride[0] = 1;
+ stride[1] = 1;
+ stride[2] = 1;
+ stride[3] = 2;
+ count[0] = 3;
+ count[1] = 1;
+ count[2] = 1;
+ count[3] = 2;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride ,count, NULL) < 0)
+ TEST_ERROR
+ start[0] = 1;
+ start[1] = 0;
+ start[2] = 1;
+ start[3] = 0;
+ stride[0] = 1;
+ stride[1] = 2;
+ stride[2] = 1;
+ stride[3] = 1;
+ count[0] = 1;
+ count[1] = 2;
+ count[2] = 1;
+ count[3] = 3;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_OR, start, stride ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 1;
+ count[1] = 12;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Write second slice */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, memspace, vspace[0], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ erbuf[0][4] = buf[0][0];
+ erbuf[0][5] = buf[0][1];
+ erbuf[0][6] = buf[0][2];
+ erbuf[0][7] = buf[0][3];
+ erbuf[0][12] = buf[0][4];
+ erbuf[0][15] = buf[0][5];
+ erbuf[1][4] = buf[0][6];
+ erbuf[1][7] = buf[0][7];
+ erbuf[1][12] = buf[0][8];
+ erbuf[1][13] = buf[0][9];
+ erbuf[1][14] = buf[0][10];
+ erbuf[1][15] = buf[0][11];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ buf[i][j] += (int)(sizeof(buf) / sizeof(buf[0][0]));
+
+ /* Select stripe (only select mapped elements) */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 2;
+ start[3] = 0;
+ stride[0] = 2;
+ stride[1] = 2;
+ stride[2] = 1;
+ stride[3] = 2;
+ count[0] = 2;
+ count[1] = 2;
+ count[2] = 1;
+ count[3] = 2;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride ,count, NULL) < 0)
+ TEST_ERROR
+ start[0] = 1;
+ start[1] = 1;
+ start[2] = 2;
+ start[3] = 0;
+ stride[0] = 1;
+ stride[1] = 1;
+ stride[2] = 1;
+ stride[3] = 2;
+ count[0] = 1;
+ count[1] = 1;
+ count[2] = 1;
+ count[3] = 2;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_OR, start, stride ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 1;
+ count[1] = 10;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Write third slice */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, memspace, vspace[0], H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ erbuf[0][2] = buf[0][0];
+ erbuf[0][3] = buf[0][1];
+ erbuf[0][10] = buf[0][2];
+ erbuf[0][11] = buf[0][3];
+ erbuf[1][2] = buf[0][6];
+ erbuf[1][3] = buf[0][7];
+ erbuf[1][10] = buf[0][8];
+ erbuf[1][11] = buf[0][9];
+ erbuf[1][5] = buf[0][4];
+ erbuf[1][6] = buf[0][5];
+
+ /* Reopen srcdset and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDONLY, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read data directly from source dataset */
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 2;
+ count[1] = 16;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL ,count, NULL) < 0)
+ TEST_ERROR
+
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Read dataset */
+ if(H5Dread(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)(sizeof(buf) / sizeof(buf[0])); i++)
+ for(j = 0; j < (int)(sizeof(buf[0]) / sizeof(buf[0][0])); j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Now try writing to whole VDS (should fail due to unmapped elements) */
+ count[0] = 9;
+ count[1] = 9;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ H5E_BEGIN_TRY {
+ ret = H5Dwrite(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]);
+ } H5E_END_TRY
+ if(ret >= 0)
+ TEST_ERROR
+
+ /* Close */
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(srcspace[1]) < 0)
+ TEST_ERROR
+ srcspace[1] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+ if(H5Sclose(memspace) < 0)
+ TEST_ERROR
+ memspace = -1;
+
+
+ /* Close */
+ if(H5Pclose(dcpl) < 0)
+ TEST_ERROR
+ dcpl = -1;
+
+ PASSED();
+ return 0;
+
+error:
+ H5E_BEGIN_TRY {
+ for(i = 0; i < (int)(sizeof(srcdset) / sizeof(srcdset[0])); i++) {
+ if(srcdset[i] >= 0)
+ (void)H5Dclose(srcdset[i]);
+ } /* end for */
+ if(vdset >= 0)
+ (void)H5Dclose(vdset);
+ for(i = 0; i < (int)(sizeof(srcfile) / sizeof(srcfile[0])); i++) {
+ if(srcfile[i] >= 0)
+ (void)H5Fclose(srcfile[i]);
+ } /* end for */
+ if(vfile >= 0)
+ (void)H5Fclose(vfile);
+ if(vfile2 >= 0)
+ (void)H5Fclose(vfile2);
+ for(i = 0; i < (int)(sizeof(srcspace) / sizeof(srcspace[0])); i++) {
+ if(srcspace[i] >= 0)
+ (void)H5Sclose(srcspace[i]);
+ } /* end for */
+ for(i = 0; i < (int)(sizeof(vspace) / sizeof(vspace[0])); i++) {
+ if(vspace[i] >= 0)
+ (void)H5Sclose(vspace[i]);
+ } /* end for */
+ if(memspace >= 0)
+ (void)H5Sclose(memspace);
+ if(dcpl >= 0)
+ (void)H5Pclose(dcpl);
+ } H5E_END_TRY;
+
+ return 1;
+} /* end test_basic_io() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: test_unlim
+ *
+ * Purpose: Tests VDS with unlimited selections
+ *
+ * Return: Success: 0
+ *
+ * Failure: number of errors
+ *
+ * Programmer: Neil Fortner
+ * Thursday, April 30, 2015
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_unlim(unsigned config, hid_t fapl)
+{
+ char srcfilename[FILENAME_BUF_SIZE];
+ char srcfilename_map[FILENAME_BUF_SIZE];
+ char vfilename[FILENAME_BUF_SIZE];
+ hid_t srcfile[4] = {-1, -1, -1, -1}; /* Files with source dsets */
+ hid_t vfile = -1; /* File with virtual dset */
+ hid_t dcpl = -1; /* Dataset creation property list */
+ hid_t srcdcpl = -1; /* DCPL for source dset */
+ hid_t dapl = -1; /* Dataset access property list */
+ hid_t srcspace[4] = {-1, -1, -1, -1}; /* Source dataspaces */
+ hid_t vspace[4] = {-1, -1, -1, -1}; /* Virtual dset dataspaces */
+ hid_t memspace = -1; /* Memory dataspace */
+ hid_t filespace = -1; /* File dataspace */
+ hid_t srcdset[4] = {-1, -1, -1, -1}; /* Source datsets */
+ hid_t vdset = -1; /* Virtual dataset */
+ hsize_t dims[2] = {10, 10}; /* Data space current size */
+ hsize_t mdims[2] = {10, 20}; /* Data space maximum size */
+ hsize_t cdims[2] = {4, 4}; /* Chunk dimensions */
+ hsize_t start[4]; /* Hyperslab start */
+ hsize_t stride[4]; /* Hyperslab stride */
+ hsize_t count[4]; /* Hyperslab count */
+ hsize_t block[4]; /* Hyperslab block */
+ int buf[10][20]; /* Write and expected read buffer */
+ int rbuf[10][20]; /* Read buffer */
+ int erbuf[10][20]; /* Expected read buffer */
+ int ndims; /* Number of dimensions */
+ int fill = -1; /* Fill value */
+ H5D_vds_view_t virtual_view; /* Virtual view property */
+ int i, j;
+
+ TESTING("virtual dataset I/O with unlimited selections")
+
+ h5_fixname(FILENAME[0], fapl, vfilename, sizeof vfilename);
+ h5_fixname(FILENAME[2], fapl, srcfilename, sizeof srcfilename);
+ h5_fixname_printf(FILENAME[2], fapl, srcfilename_map, sizeof srcfilename_map);
+
+ /* Create DCPLs */
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ TEST_ERROR
+ if((srcdcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ TEST_ERROR
+
+ /* Set fill value */
+ if(H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fill) < 0)
+ TEST_ERROR
+
+ /* Set chunk dimensions */
+ if(H5Pset_chunk(srcdcpl, 2, cdims) < 0)
+ TEST_ERROR
+
+ /* Create DAPL */
+ if((dapl = H5Pcreate(H5P_DATASET_ACCESS)) < 0)
+ TEST_ERROR
+
+ /* Create memory space */
+ if((memspace = H5Screate_simple(2, mdims, NULL)) < 0)
+ TEST_ERROR
+
+
+ /*
+ * Test 1: 2 Source datasets, single unlimited hyperslab virtual mappings
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[0] = 5;
+ mdims[0] = 5;
+ if((srcspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ mdims[0] = 10;
+
+ /* Select hyperslab in source space */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 5;
+ count[1] = H5S_UNLIMITED;
+ if(H5Sselect_hyperslab(srcspace[0], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual spaces */
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[0] = 5;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mappings */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset1", srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset2", srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset1", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset2", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write data directly to source datasets */
+ /* Select hyperslab in memory */
+ start[0] = 0;
+ count[1] = 10;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Write first dataset */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++)
+ for(j = 0; j < 10; j++)
+ erbuf[i][j] = buf[i][j];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write second dataset */
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++)
+ for(j = 0; j < 10; j++)
+ erbuf[i + 5][j] = buf[i][j];
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Test H5Pget_virtual_view() */
+ if(H5Pget_virtual_view(dapl, &virtual_view) < 0)
+ TEST_ERROR
+ if(virtual_view != H5D_VDS_LAST_AVAILABLE)
+ TEST_ERROR
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Test H5Pget_virtual_view() */
+ if(H5Pget_virtual_view(dapl, &virtual_view) < 0)
+ TEST_ERROR
+ if(virtual_view != H5D_VDS_FIRST_MISSING)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[0] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[0] */
+ dims[0] = 5;
+ dims[1] = 15;
+ if(H5Dset_extent(srcdset[0], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to new area of srcdset */
+ count[1] = 5;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if((filespace = H5Dget_space(srcdset[0])) < 0)
+ TEST_ERROR
+ start[1] = 10;
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Close srcdset[0] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions. Note that since we are using
+ * H5D_VDS_FIRST_MISSING and we only extended one source dataset the
+ * dimensions will not have changed. */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_LAST_AVAILABLE, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_LAST_AVAILABLE) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Update erbuf to reflect new data that is now visible due to the change to
+ * H5D_VDS_LAST_AVAILABLE */
+ for(i = 0; i < 5; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j + 10] = buf[i][j];
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 15)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset2", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[1] */
+ dims[0] = 5;
+ dims[1] = 20;
+ if(H5Dset_extent(srcdset[1], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to new area of srcdset */
+ count[1] = 10;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if((filespace = H5Dget_space(srcdset[1])) < 0)
+ TEST_ERROR
+ start[1] = 10;
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++)
+ for(j = 0; j < 10; j++)
+ erbuf[i + 5][j + 10] = buf[i][j];
+
+ /* Close srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 20)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Now just read middle 2 rows */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ start[0] = 4;
+ count[0] = 2;
+ count[1] = 20;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, memspace, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data - algorithmically check for only 2 middle rows being
+ * read so we don't have to wipe out erbuf and then restore it afterwards */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ if((i == 4) || (i == 5)) {
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+
+ /* Now test reopening virtual dataset without calling H5Dget_space, if
+ * REOPEN_VIRT flag set */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Now try setting extent manually */
+ /* Shrink to 18 */
+ dims[1] = 18;
+ if(H5Dset_extent(vdset, dims) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Shrink to 15 */
+ dims[1] = 15;
+ if(H5Dset_extent(vdset, dims) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+ } /* end if */
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 15)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Now test reopening virtual dataset without calling H5Dget_space, if
+ * REOPEN_VIRT flag set */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Now try setting extent manually */
+ /* Grow to 18 */
+ dims[1] = 18;
+ if(H5Dset_extent(vdset, dims) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Grow to 20 */
+ dims[1] = 20;
+ if(H5Dset_extent(vdset, dims) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end if */
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ else if(!(config & TEST_IO_DIFFERENT_FILE)) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+
+
+ /*
+ * Test 2: 2 Source datasets, interleaved slices, single element wide
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ dims[0] = 10;
+ dims[1] = 10;
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[1] = 5;
+ mdims[1] = 10;
+ if((srcspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ mdims[1] = 20;
+
+ /* Select hyperslab in source space */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 10;
+ count[1] = H5S_UNLIMITED;
+ if(H5Sselect_hyperslab(srcspace[0], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual spaces */
+ stride[0] = 1;
+ stride[1] = 2;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ block[0] = 10;
+ block[1] = 1;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 1;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 0;
+
+ /* Add virtual layout mappings */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset1", srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset2", srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset1", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset2", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write data directly to source datasets */
+ /* Select hyperslab in memory */
+ count[0] = 10;
+ count[1] = 5;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Write first dataset */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][2 * j] = buf[i][j];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write second dataset */
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][(2 * j) + 1] = buf[i][j];
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[0] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[0] */
+ dims[1] = 7;
+ if(H5Dset_extent(srcdset[0], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to new area of srcdset */
+ count[1] = 2;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if((filespace = H5Dget_space(srcdset[0])) < 0)
+ TEST_ERROR
+ start[1] = 5;
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[1] = 0;
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Update erbuf to reflect only new data that is now visible under
+ * H5D_VDS_FIRST_MISSING (first slice) */
+ for(i = 0; i < 10; i++)
+ erbuf[i][10] = buf[i][0];
+
+ /* Close srcdset[0] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions. Note that since we are using
+ * H5D_VDS_FIRST_MISSING and we only extended one source dataset the
+ * dimension will only have changed to add one more slice. */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 11)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_LAST_AVAILABLE, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_LAST_AVAILABLE) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Update erbuf to reflect new data that is now visible due to the change to
+ * H5D_VDS_LAST_AVAILABLE (second new slice) */
+ for(i = 0; i < 10; i++)
+ erbuf[i][12] = buf[i][1];
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 13)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset2", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[1] */
+ dims[1] = 10;
+ if(H5Dset_extent(srcdset[1], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to new area of srcdset */
+ count[1] = 5;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if((filespace = H5Dget_space(srcdset[1])) < 0)
+ TEST_ERROR
+ start[1] = 5;
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[1] = 0;
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][(2 * j) + 11] = buf[i][j];
+
+ /* Close srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 20)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Now just read middle 2 rows */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ start[0] = 4;
+ count[0] = 2;
+ count[1] = 20;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[0] = 0;
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, memspace, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data - algorithmically check for only 2 middle rows being
+ * read so we don't have to wipe out erbuf and then restore it afterwards */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ if((i == 4) || (i == 5)) {
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Update erbuf to reflect new data that is no longer visible due to the
+ * change to H5D_VDS_FIRST_MISSING */
+ for(i = 0; i < 10; i++)
+ for(j = 15; j < 20; j += 2)
+ erbuf[i][j] = fill;
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 14)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ else if(!(config & TEST_IO_DIFFERENT_FILE)) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+
+
+ /*
+ * Test 3: 3 Source datasets, interleaved slices, two elements wide
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ dims[0] = 10;
+ dims[1] = 10;
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ if((vspace[2] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspaces */
+ dims[1] = 4;
+ mdims[1] = 8;
+ if((srcspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ dims[1] = 4;
+ mdims[1] = 6;
+ if((srcspace[1] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ dims[1] = 2;
+ mdims[1] = 6;
+ if((srcspace[2] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ mdims[1] = 20;
+
+ /* Select hyperslab in source spaces */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 10;
+ count[1] = H5S_UNLIMITED;
+ if(H5Sselect_hyperslab(srcspace[0], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Sselect_hyperslab(srcspace[1], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Sselect_hyperslab(srcspace[2], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual spaces */
+ stride[0] = 1;
+ stride[1] = 6;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ block[0] = 10;
+ block[1] = 2;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 2;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 4;
+ if(H5Sselect_hyperslab(vspace[2], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 0;
+
+ /* Add virtual layout mappings */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset1", srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset2", srcspace[1]) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[2], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset3", srcspace[2]) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset1", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset2", H5T_NATIVE_INT, srcspace[1], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[2] = H5Dcreate2(srcfile[0], "src_dset3", H5T_NATIVE_INT, srcspace[2], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write data directly to source datasets */
+ /* Select hyperslab in memory */
+ count[0] = 10;
+ count[1] = 4;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Write first dataset */
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 2; j++) {
+ erbuf[i][6 * j] = buf[i][2 * j];
+ erbuf[i][(6 * j) + 1] = buf[i][(2 * j) + 1];
+ } /* end for */
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write second dataset */
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 2; j++) {
+ erbuf[i][(6 * j) + 2] = buf[i][2 * j];
+ erbuf[i][(6 * j) + 3] = buf[i][(2 * j) + 1];
+ } /* end for */
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Select hyperslab in memory */
+ count[0] = 10;
+ count[1] = 2;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Write third dataset */
+ if(H5Dwrite(srcdset[2], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++) {
+ erbuf[i][4] = buf[i][0];
+ erbuf[i][5] = buf[i][1];
+ } /* end for */
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Dclose(srcdset[2]) < 0)
+ TEST_ERROR
+ srcdset[2] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[0] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[0] */
+ dims[1] = 7;
+ if(H5Dset_extent(srcdset[0], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to new area of srcdset */
+ count[1] = 3;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if((filespace = H5Dget_space(srcdset[0])) < 0)
+ TEST_ERROR
+ start[1] = 4;
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[1] = 0;
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Close srcdset[0] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions. Note that since we are using
+ * H5D_VDS_FIRST_MISSING the size will not have changed. */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_LAST_AVAILABLE, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_LAST_AVAILABLE) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Update erbuf to reflect new data that is now visible due to the change to
+ * H5D_VDS_LAST_AVAILABLE */
+ for(i = 0; i < 10; i++) {
+ erbuf[i][12] = buf[i][0];
+ erbuf[i][13] = buf[i][1];
+ erbuf[i][18] = buf[i][2];
+ } /* end for */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 19)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[2] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[2] = H5Dopen2(srcfile[0], "src_dset3", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[2] */
+ dims[1] = 5;
+ if(H5Dset_extent(srcdset[2], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to new area of srcdset */
+ count[1] = 3;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if((filespace = H5Dget_space(srcdset[2])) < 0)
+ TEST_ERROR
+ start[1] = 2;
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[1] = 0;
+ if(H5Dwrite(srcdset[2], H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++) {
+ erbuf[i][10] = buf[i][0];
+ erbuf[i][11] = buf[i][1];
+ erbuf[i][16] = buf[i][2];
+ } /* end for */
+
+ /* Close srcdset[2] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[2]) < 0)
+ TEST_ERROR
+ srcdset[2] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions. Note that the dimensions will not have
+ * changed. */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 19)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 14)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset2", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[1] */
+ dims[1] = 6;
+ if(H5Dset_extent(srcdset[1], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to new area of srcdset */
+ count[1] = 2;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if((filespace = H5Dget_space(srcdset[1])) < 0)
+ TEST_ERROR
+ start[1] = 4;
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[1] = 0;
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++) {
+ erbuf[i][14] = buf[i][0];
+ erbuf[i][15] = buf[i][1];
+ } /* end for */
+
+ /* Close srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 17)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_LAST_AVAILABLE, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_LAST_AVAILABLE) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 19)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Now just read middle 2 rows */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+ start[0] = 4;
+ count[0] = 2;
+ count[1] = 19;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[0] = 0;
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Verify read data - algorithmically check for only 2 middle rows being
+ * read */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else if((i == 4) || (i == 5)) {
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Dclose(srcdset[2]) < 0)
+ TEST_ERROR
+ srcdset[2] = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ else if(!(config & TEST_IO_DIFFERENT_FILE)) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(srcspace[1]) < 0)
+ TEST_ERROR
+ srcspace[1] = -1;
+ if(H5Sclose(srcspace[2]) < 0)
+ TEST_ERROR
+ srcspace[2] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+
+
+ /*
+ * Test 4: 2 Source datasets, offset starts
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspaces */
+ dims[0] = 5;
+ dims[1] = 0;
+ mdims[0] = 5;
+ if((srcspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ dims[1] = 5;
+ if((srcspace[1] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ mdims[0] = 10;
+
+ /* Select hyperslab in source spaces */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 5;
+ count[1] = H5S_UNLIMITED;
+ if(H5Sselect_hyperslab(srcspace[0], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Sselect_hyperslab(srcspace[1], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual spaces */
+ start[1] = 10;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ start[0] = 5;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mappings */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset1", srcspace[0]) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset2", srcspace[1]) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset1", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset2", H5T_NATIVE_INT, srcspace[1], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write data directly to second source dataset */
+ /* Select hyperslab in memory */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 5;
+ count[1] = 5;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Write second dataset */
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i + 5][j] = buf[i][j];
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 5)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 5)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[0] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[0] */
+ dims[0] = 5;
+ dims[1] = 5;
+ if(H5Dset_extent(srcdset[0], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[0] */
+ start[0] = 0;
+ start[1] = 0;
+ count[0] = 5;
+ count[1] = 5;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j + 10] = buf[i][j];
+
+ /* Close srcdset[0] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 5)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_LAST_AVAILABLE, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_LAST_AVAILABLE) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 15)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ else if(!(config & TEST_IO_DIFFERENT_FILE)) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace[0]) < 0)
+ TEST_ERROR
+ srcspace[0] = -1;
+ if(H5Sclose(srcspace[1]) < 0)
+ TEST_ERROR
+ srcspace[1] = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+
+
+ /* Close */
+ if(H5Pclose(dcpl) < 0)
+ TEST_ERROR
+ dcpl = -1;
+ if(H5Pclose(srcdcpl) < 0)
+ TEST_ERROR
+ dcpl = -1;
+ if(H5Pclose(dapl) < 0)
+ TEST_ERROR
+ dapl = -1;
+ if(H5Sclose(memspace) < 0)
+ TEST_ERROR
+ memspace = -1;
+
+ PASSED();
+ return 0;
+
+error:
+ H5E_BEGIN_TRY {
+ for(i = 0; i < (int)(sizeof(srcdset) / sizeof(srcdset[0])); i++) {
+ if(srcdset[i] >= 0)
+ (void)H5Dclose(srcdset[i]);
+ } /* end for */
+ if(vdset >= 0)
+ (void)H5Dclose(vdset);
+ for(i = 0; i < (int)(sizeof(srcfile) / sizeof(srcfile[0])); i++) {
+ if(srcfile[i] >= 0)
+ (void)H5Fclose(srcfile[i]);
+ } /* end for */
+ if(vfile >= 0)
+ (void)H5Fclose(vfile);
+ for(i = 0; i < (int)(sizeof(srcspace) / sizeof(srcspace[0])); i++) {
+ if(srcspace[i] >= 0)
+ (void)H5Sclose(srcspace[i]);
+ } /* end for */
+ for(i = 0; i < (int)(sizeof(vspace) / sizeof(vspace[0])); i++) {
+ if(vspace[i] >= 0)
+ (void)H5Sclose(vspace[i]);
+ } /* end for */
+ if(filespace >= 0)
+ (void)H5Sclose(filespace);
+ if(memspace >= 0)
+ (void)H5Sclose(memspace);
+ if(dcpl >= 0)
+ (void)H5Pclose(dcpl);
+ if(srcdcpl >= 0)
+ (void)H5Pclose(srcdcpl);
+ if(dapl >= 0)
+ (void)H5Pclose(dapl);
+ } H5E_END_TRY;
+
+ return 1;
+} /* end test_unlim() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: test_printf
+ *
+ * Purpose: Tests VDS with unlimited selections and printf style
+ * source dataset resolution
+ *
+ * Return: Success: 0
+ *
+ * Failure: number of errors
+ *
+ * Programmer: Neil Fortner
+ * Tuesday, May 26, 2015
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_printf(unsigned config, hid_t fapl)
+{
+ char srcfilename[FILENAME_BUF_SIZE];
+ char srcfilename_map[FILENAME_BUF_SIZE];
+ char srcfilename2[FILENAME_BUF_SIZE];
+ char srcfilename2_map[FILENAME_BUF_SIZE];
+ char vfilename[FILENAME_BUF_SIZE];
+ char printf_srcfilename_map[FILENAME_BUF_SIZE];
+ const char *printf_srcfilename_map_orig = "vds_src_%b";
+ char srcfilenamepct[FILENAME_BUF_SIZE];
+ char srcfilenamepct_map[FILENAME_BUF_SIZE];
+ const char *srcfilenamepct_map_orig = "vds%%_src";
+ hid_t srcfile[4] = {-1, -1, -1, -1}; /* Files with source dsets */
+ hid_t vfile = -1; /* File with virtual dset */
+ hid_t dcpl = -1; /* Dataset creation property list */
+ hid_t dapl = -1; /* Dataset access property list */
+ hid_t srcspace = -1; /* Source dataspace */
+ hid_t vspace[2] = {-1, -1}; /* Virtual dset dataspaces */
+ hid_t memspace = -1; /* Memory dataspace */
+ hid_t filespace = -1; /* File dataspace */
+ hid_t srcdset[6] = {-1, -1, -1, -1, -1, -1}; /* Source datsets */
+ hid_t vdset = -1; /* Virtual dataset */
+ hsize_t dims[2] = {10, 0}; /* Data space current size */
+ hsize_t mdims[2] = {10, 20}; /* Data space maximum size */
+ hsize_t start[2] = {0, 0}; /* Hyperslab start */
+ hsize_t stride[2]; /* Hyperslab stride */
+ hsize_t count[2]; /* Hyperslab count */
+ hsize_t block[2]; /* Hyperslab block */
+ int buf[10][20]; /* Write and expected read buffer */
+ int rbuf[10][20]; /* Read buffer */
+ int erbuf[10][20]; /* Expected read buffer */
+ int ndims; /* Number of dimensions */
+ int fill = -1; /* Fill value */
+ hsize_t gap_size; /* Gap size property */
+ int i, j;
+
+ TESTING("virtual dataset I/O with printf source")
+
+ h5_fixname(FILENAME[0], fapl, vfilename, sizeof vfilename);
+ h5_fixname(FILENAME[2], fapl, srcfilename, sizeof srcfilename);
+ h5_fixname_printf(FILENAME[2], fapl, srcfilename_map, sizeof srcfilename_map);
+ h5_fixname(FILENAME[3], fapl, srcfilename2, sizeof srcfilename2);
+ h5_fixname_printf(FILENAME[2], fapl, srcfilename2_map, sizeof srcfilename2_map);
+ h5_fixname_printf(printf_srcfilename_map_orig, fapl, printf_srcfilename_map, sizeof printf_srcfilename_map);
+ h5_fixname(FILENAME[4], fapl, srcfilenamepct, sizeof srcfilenamepct);
+ h5_fixname_printf(srcfilenamepct_map_orig, fapl, srcfilenamepct_map, sizeof srcfilenamepct_map);
+
+ /* Create DCPL */
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ TEST_ERROR
+
+ /* Set fill value */
+ if(H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fill) < 0)
+ TEST_ERROR
+
+ /* Create DAPL */
+ if((dapl = H5Pcreate(H5P_DATASET_ACCESS)) < 0)
+ TEST_ERROR
+
+ /* Create memory space */
+ if((memspace = H5Screate_simple(2, mdims, NULL)) < 0)
+ TEST_ERROR
+
+
+ /*
+ * Test 1: 1 Source dataset mapping, 10x5 blocks
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspace */
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[1] = 5;
+ if((srcspace = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual space */
+ stride[0] = 1;
+ stride[1] = 5;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ block[0] = 10;
+ block[1] = 5;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset%b", srcspace) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Close srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 0)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Reopen srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 2 source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset0", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset1", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write to srcdset[0] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j] = buf[i][j];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[1] */
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j + 5] = buf[i][j];
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcfile if config option specified */
+ if((config & TEST_IO_CLOSE_SRC) && (config & TEST_IO_DIFFERENT_FILE))
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 3rd source dataset */
+ if((srcdset[2] = H5Dcreate2(srcfile[0], "src_dset2", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[2] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[2], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j + 10] = buf[i][j];
+
+ /* Close srcdset[2] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[2]) < 0)
+ TEST_ERROR
+ srcdset[2] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 15)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Now try with different selections */
+ count[0] = 10;
+ for(start[1] = (hsize_t)0; start[1] < (hsize_t)5; start[1]++)
+ for(count[1] = (hsize_t)1; count[1] < (hsize_t)11; count[1]++) {
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslab in file space */
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if((j < (int)start[1]) || (j >= (int)(start[1] + count[1]))) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+ } /* end for */
+ start[1] = 0;
+
+ /* Now try writing through VDS */
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslab in file space */
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write data through VDS */
+ if(H5Dwrite(vdset, H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Reopen srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dopen2(srcfile[0], "src_dset0", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile[0], "src_dset1", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[2] = H5Dopen2(srcfile[0], "src_dset2", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Read srcdset[0] */
+ count[0] = 10;
+ count[1] = 5;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Dread(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ if(rbuf[i][j] != buf[i][j])
+ TEST_ERROR
+
+ /* Read srcdset[1] */
+ if(H5Dread(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ if(rbuf[i][j] != buf[i][j + 5])
+ TEST_ERROR
+
+ /* Read srcdset[2] */
+ if(H5Dread(srcdset[2], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ if(rbuf[i][j] != buf[i][j + 10])
+ TEST_ERROR
+
+ /* Close */
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Dclose(srcdset[2]) < 0)
+ TEST_ERROR
+ srcdset[2] = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace) < 0)
+ TEST_ERROR
+ srcspace = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+
+
+ /*
+ * Test 2: 1 Source dataset mapping, 10x1 blocks, test printf gap setting,
+ * '%' in source file name
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[1] = 1;
+ if((srcspace = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual space */
+ stride[0] = 1;
+ stride[1] = 1;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ block[0] = 10;
+ block[1] = 1;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilenamepct_map : ".", "src_dset%b", srcspace) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilenamepct, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Close srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 0)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Reopen srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilenamepct, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source datasets in a pattern with increasing gaps:
+ * XX-X--X---X----X */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset0", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset1", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[2] = H5Dcreate2(srcfile[0], "src_dset3", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[3] = H5Dcreate2(srcfile[0], "src_dset6", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[4] = H5Dcreate2(srcfile[0], "src_dset10", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[5] = H5Dcreate2(srcfile[0], "src_dset15", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write to srcdset[0] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][0] = buf[i][0];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[1] */
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][1] = buf[i][0];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[2] */
+ if(H5Dwrite(srcdset[2], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][3] = buf[i][0];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[3] */
+ if(H5Dwrite(srcdset[3], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][6] = buf[i][0];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[4] */
+ if(H5Dwrite(srcdset[4], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][10] = buf[i][0];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[5] */
+ if(H5Dwrite(srcdset[5], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][15] = buf[i][0];
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ for(i = 0; i < 6; i++) {
+ if(H5Dclose(srcdset[i]) < 0)
+ TEST_ERROR
+ srcdset[i] = -1;
+ } /* end for */
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 2)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Test H5Pget_virtual_printf_gap() */
+ if(H5Pget_virtual_printf_gap(dapl, &gap_size) < 0)
+ TEST_ERROR
+ if(gap_size != (hsize_t)0)
+ TEST_ERROR
+
+ /* Close VDS and reopen with printf gap set to 1, reopen file as well if
+ * config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_printf_gap(dapl, (hsize_t)1) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Test H5Pget_virtual_printf_gap() */
+ if(H5Pget_virtual_printf_gap(dapl, &gap_size) < 0)
+ TEST_ERROR
+ if(gap_size != (hsize_t)1)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 4)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with printf gap set to 2, reopen file as well if
+ * config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_printf_gap(dapl, (hsize_t)2) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 7)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with printf gap set to 3, reopen file as well if
+ * config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_printf_gap(dapl, (hsize_t)3) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 11)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with printf gap set to 4, reopen file as well if
+ * config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_printf_gap(dapl, (hsize_t)4) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 16)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 2)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reset dapl */
+ if(H5Pset_virtual_printf_gap(dapl, (hsize_t)0) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_LAST_AVAILABLE) < 0)
+ TEST_ERROR
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ for(i = 0; i < 6; i++) {
+ if(H5Dclose(srcdset[i]) < 0)
+ TEST_ERROR
+ srcdset[i] = -1;
+ } /* end for */
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ else if(!(config & TEST_IO_DIFFERENT_FILE)) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace) < 0)
+ TEST_ERROR
+ srcspace = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+
+
+ /* Next 2 tests are always run with a different source file, so only run if
+ * that config option is set (so they're not run twice with the same
+ * configuration) */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ /*
+ * Test 3: 1 Source dataset mapping, 10x5 blocks, printf source file
+ */
+ /* Clean up files so the source files do not exist yet */
+ h5_cleanup_files(FILENAME, fapl);
+
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[1] = 5;
+ if((srcspace = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual space */
+ stride[0] = 1;
+ stride[1] = 5;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ block[0] = 10;
+ block[1] = 5;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[0], printf_srcfilename_map, "src_dset", srcspace) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 0)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Create 2 source files, one source dataset */
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcfile[1] = H5Fcreate(srcfilename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write to srcdset[0] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j] = buf[i][j];
+
+ /* Close srcdset and srcfiles if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(srcfile[1]) < 0)
+ TEST_ERROR
+ srcfile[1] = -1;
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 5)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcfile[1] if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if((srcfile[1] = H5Fopen(srcfilename2, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 2nd source dataset */
+ if((srcdset[1] = H5Dcreate2(srcfile[1], "src_dset", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[1] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j + 5] = buf[i][j];
+
+ /* Close srcdset[1] and srcfile[1] if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Fclose(srcfile[1]) < 0)
+ TEST_ERROR
+ srcfile[1] = -1;
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(srcfile[1]) < 0)
+ TEST_ERROR
+ srcfile[1] = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace) < 0)
+ TEST_ERROR
+ srcspace = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+
+
+ /*
+ * Test 4: 1 Source dataset mapping, 10x5 blocks, printf source file and
+ * source dset, extra %%s in source dataset name
+ */
+ /* Clean up files so the source files do not exist yet */
+ h5_cleanup_files(FILENAME, fapl);
+
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[1] = 5;
+ if((srcspace = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual space */
+ stride[0] = 1;
+ stride[1] = 5;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ block[0] = 10;
+ block[1] = 5;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[0], printf_srcfilename_map, "%%src%%_dset%%%b", srcspace) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 0)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Create 2 source files, one source dataset */
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "%src%_dset%0", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcfile[1] = H5Fcreate(srcfilename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write to srcdset[0] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j] = buf[i][j];
+
+ /* Close srcdset and srcfiles if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(srcfile[1]) < 0)
+ TEST_ERROR
+ srcfile[1] = -1;
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 5)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcfile[1] if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if((srcfile[1] = H5Fopen(srcfilename2, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 2nd source dataset */
+ if((srcdset[1] = H5Dcreate2(srcfile[1], "%src%_dset%1", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[1] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j + 5] = buf[i][j];
+
+ /* Close srcdset[1] and srcfile[1] if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Fclose(srcfile[1]) < 0)
+ TEST_ERROR
+ srcfile[1] = -1;
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ if(H5Fclose(srcfile[1]) < 0)
+ TEST_ERROR
+ srcfile[1] = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace) < 0)
+ TEST_ERROR
+ srcspace = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ } /* end if */
+
+
+ /*
+ * Test 5: 2 Source mappings, interleaved slices, single element wide,
+ * hyperslab selection in source, extra %%s in source dataset names
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ dims[0] = 10;
+ dims[1] = 10;
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace (2 elements wide) */
+ dims[1] = 2;
+ if((srcspace = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select hyperslab in source space */
+ count[0] = 10;
+ count[1] = 1;
+ if(H5Sselect_hyperslab(srcspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual spaces */
+ stride[0] = 1;
+ stride[1] = 2;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ block[0] = 10;
+ block[1] = 1;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 1;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[1] = 0;
+
+ /* Add virtual layout mappings */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "%bsrc_dset_a%b%%", srcspace) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset_b%b%%%%", srcspace) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Close srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 0)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Reopen srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 2 source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "0src_dset_a0%", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset_b0%%", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write to srcdset[0] */
+ block[0] = 10;
+ block[1] = 2;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][0] = buf[i][0];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[1] */
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][1] = buf[i][0];
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 2)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcfile if config option specified */
+ if((config & TEST_IO_CLOSE_SRC) && (config & TEST_IO_DIFFERENT_FILE))
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 3rd source dataset */
+ if((srcdset[2] = H5Dcreate2(srcfile[0], "src_dset_b1%%", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[2] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[2], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][3] = buf[i][0];
+
+ /* Close srcdset[2] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[2]) < 0)
+ TEST_ERROR
+ srcdset[2] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 4)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions. Make sure that the 4th slice is no longer
+ * visible due to the change to H5D_VDS_FIRST_MISSING. */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 2)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcfile if config option specified */
+ if((config & TEST_IO_CLOSE_SRC) && (config & TEST_IO_DIFFERENT_FILE))
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 4th source dataset */
+ if((srcdset[3] = H5Dcreate2(srcfile[0], "2src_dset_a2%", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[3] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[3], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][4] = buf[i][0];
+
+ /* Close srcdset[3] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[3]) < 0)
+ TEST_ERROR
+ srcdset[3] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 2)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_LAST_AVAILABLE, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_LAST_AVAILABLE) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions. Make sure that the 4th slice is now visible
+ * due to the change to H5D_VDS_LAST_AVAILABLE. */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 4)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with printf_gap set to 1, reopen file as well if
+ * config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_printf_gap(dapl, (hsize_t)1) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions. Make sure that the 6th slice is now visible
+ * due to the change to printf_gap. */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 5)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reset dapl */
+ if(H5Pset_virtual_printf_gap(dapl, (hsize_t)0) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_LAST_AVAILABLE) < 0)
+ TEST_ERROR
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ for(i = 0; i < 4; i++) {
+ if(H5Dclose(srcdset[i]) < 0)
+ TEST_ERROR
+ srcdset[i] = -1;
+ } /* end for */
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ else if(!(config & TEST_IO_DIFFERENT_FILE)) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace) < 0)
+ TEST_ERROR
+ srcspace = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+
+
+ /*
+ * Test 6: 2 Source mappings, side-by-side, 5x5 and 5x10 blocks
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ dims[0] = 10;
+ dims[1] = 10;
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ if((vspace[1] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace (1 dimensional) */
+ dims[0] = 50;
+ if((srcspace = H5Screate_simple(1, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select hyperslab in source space */
+ count[0] = 25;
+ if(H5Sselect_hyperslab(srcspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual spaces */
+ stride[0] = 1;
+ stride[1] = 5;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ block[0] = 5;
+ block[1] = 5;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[0] = 5;
+ stride[1] = 10;
+ block[1] = 10;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ start[0] = 0;
+
+ /* Add virtual layout mappings (select ALL in source space for second
+ * mapping) */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset_a%b", srcspace) < 0)
+ TEST_ERROR
+ if(H5Sselect_all(srcspace) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset_b%b", srcspace) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Close srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 0)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Reopen srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 2 source datasets */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset_a0", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dcreate2(srcfile[0], "src_dset_b0", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write to srcdset[0] */
+ block[0] = 5;
+ block[1] = 5;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ count[0] = 25;
+ if(H5Sselect_hyperslab(srcspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, srcspace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j] = buf[i][j];
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[1] */
+ block[1] = 10;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Sselect_all(srcspace) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, srcspace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++)
+ for(j = 0; j < 10; j++)
+ erbuf[i + 5][j] = buf[i][j];
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions. Make sure that the 4th slice is no longer
+ * visible due to the change to H5D_VDS_FIRST_MISSING. */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 5)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcfile if config option specified */
+ if((config & TEST_IO_CLOSE_SRC) && (config & TEST_IO_DIFFERENT_FILE))
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 3rd source dataset */
+ if((srcdset[2] = H5Dcreate2(srcfile[0], "src_dset_a1", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[2] */
+ block[1] = 5;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Sselect_hyperslab(srcspace, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[2], H5T_NATIVE_INT, memspace, srcspace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j + 5] = buf[i][j];
+
+ /* Close srcdset[2] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[2]) < 0)
+ TEST_ERROR
+ srcdset[2] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with view set to H5D_VDS_LAST_AVAILABLE, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_LAST_AVAILABLE) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions. There should be no change. */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcfile if config option specified */
+ if((config & TEST_IO_CLOSE_SRC) && (config & TEST_IO_DIFFERENT_FILE))
+ if((srcfile[0] = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 4th source dataset */
+ if((srcdset[3] = H5Dcreate2(srcfile[0], "src_dset_a2", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[3] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[3], H5T_NATIVE_INT, memspace, srcspace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 5; i++)
+ for(j = 0; j < 5; j++)
+ erbuf[i][j + 10] = buf[i][j];
+
+ /* Close srcdset[3] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[3]) < 0)
+ TEST_ERROR
+ srcdset[3] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 15)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Now test reopening virtual dataset without calling H5Dget_space, if
+ * REOPEN_VIRT flag set */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Now try setting extent manually */
+ /* Shrink to 12 */
+ dims[1] = 12;
+ if(H5Dset_extent(vdset, dims) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Shrink to 10 */
+ dims[1] = 12;
+ if(H5Dset_extent(vdset, dims) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+ } /* end if */
+
+ /* Close VDS and reopen with view set to H5D_VDS_FIRST_MISSING, reopen file
+ * as well if config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_view(dapl, H5D_VDS_FIRST_MISSING) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Now test reopening virtual dataset without calling H5Dget_space, if
+ * REOPEN_VIRT flag set */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Now try setting extent manually */
+ /* Grow to 12 */
+ dims[1] = 12;
+ if(H5Dset_extent(vdset, dims) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Grow to 15 */
+ dims[1] = 15;
+ if(H5Dset_extent(vdset, dims) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+ } /* end if */
+
+ /* Reset dapl */
+ if(H5Pset_virtual_view(dapl, H5D_VDS_LAST_AVAILABLE) < 0)
+ TEST_ERROR
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ for(i = 0; i < 4; i++) {
+ if(H5Dclose(srcdset[i]) < 0)
+ TEST_ERROR
+ srcdset[i] = -1;
+ } /* end for */
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ else if(!(config & TEST_IO_DIFFERENT_FILE)) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace) < 0)
+ TEST_ERROR
+ srcspace = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+ if(H5Sclose(vspace[1]) < 0)
+ TEST_ERROR
+ vspace[1] = -1;
+
+
+ /*
+ * Test 7: 1 Source dataset mapping, 10x1 blocks, test reallocating sub_dset
+ * array
+ */
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create virtual dataspaces */
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+
+ /* Create source dataspace */
+ dims[1] = 1;
+ if((srcspace = H5Screate_simple(2, dims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Select hyperslabs in virtual space */
+ stride[0] = 1;
+ stride[1] = 1;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ block[0] = 10;
+ block[1] = 1;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+
+ /* Add virtual layout mapping */
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilenamepct_map : ".", "src_dset%b", srcspace) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile[0] = H5Fcreate(srcfilenamepct, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile[0] = vfile;
+ if(H5Iinc_ref(srcfile[0]) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, dapl)) < 0)
+ TEST_ERROR
+
+ /* Close srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 0)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Reopen srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile[0] = H5Fopen(srcfilenamepct, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create 1 source dataset */
+ if((srcdset[0] = H5Dcreate2(srcfile[0], "src_dset0", H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write to srcdset[0] */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 10; i++)
+ erbuf[i][0] = buf[i][0];
+
+ /* Close srcdset[0] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 1)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Close VDS and reopen with printf gap set to 127, reopen file as well if
+ * config option specified */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual_printf_gap(dapl, (hsize_t)127) < 0)
+ TEST_ERROR
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ if((vdset = H5Dopen2(vfile, "v_dset", dapl)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 1)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 20)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reset dapl */
+ if(H5Pset_virtual_printf_gap(dapl, (hsize_t)0) < 0)
+ TEST_ERROR
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ if(H5Dclose(srcdset[0]) < 0)
+ TEST_ERROR
+ srcdset[0] = -1;
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ else if(!(config & TEST_IO_DIFFERENT_FILE)) {
+ if(H5Fclose(srcfile[0]) < 0)
+ TEST_ERROR
+ srcfile[0] = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if(H5Sclose(srcspace) < 0)
+ TEST_ERROR
+ srcspace = -1;
+ if(H5Sclose(vspace[0]) < 0)
+ TEST_ERROR
+ vspace[0] = -1;
+
+
+ /* Close */
+ if(H5Pclose(dcpl) < 0)
+ TEST_ERROR
+ dcpl = -1;
+ if(H5Pclose(dapl) < 0)
+ TEST_ERROR
+ dapl = -1;
+ if(H5Sclose(memspace) < 0)
+ TEST_ERROR
+ memspace = -1;
+
+ PASSED();
+ return 0;
+
+error:
+ H5E_BEGIN_TRY {
+ for(i = 0; i < (int)(sizeof(srcdset) / sizeof(srcdset[0])); i++) {
+ if(srcdset[i] >= 0)
+ (void)H5Dclose(srcdset[i]);
+ } /* end for */
+ if(vdset >= 0)
+ (void)H5Dclose(vdset);
+ for(i = 0; i < (int)(sizeof(srcfile) / sizeof(srcfile[0])); i++) {
+ if(srcfile[i] >= 0)
+ (void)H5Fclose(srcfile[i]);
+ } /* end for */
+ if(vfile >= 0)
+ (void)H5Fclose(vfile);
+ if(srcspace >= 0)
+ (void)H5Sclose(srcspace);
+ for(i = 0; i < (int)(sizeof(vspace) / sizeof(vspace[0])); i++) {
+ if(vspace[i] >= 0)
+ (void)H5Sclose(vspace[i]);
+ } /* end for */
+ if(filespace >= 0)
+ (void)H5Sclose(filespace);
+ if(memspace >= 0)
+ (void)H5Sclose(memspace);
+ if(dcpl >= 0)
+ (void)H5Pclose(dcpl);
+ if(dapl >= 0)
+ (void)H5Pclose(dapl);
+ } H5E_END_TRY;
+
+ return 1;
+} /* end test_printf() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: test_all
+ *
+ * Purpose: Tests fixed, unlimited, and printf selections in the same
+ * VDS
+ *
+ * Return: Success: 0
+ *
+ * Failure: number of errors
+ *
+ * Programmer: Neil Fortner
+ * Friday, August 14, 2015
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_all(unsigned config, hid_t fapl)
+{
+ char vfilename[FILENAME_BUF_SIZE];
+ char srcfilename[FILENAME_BUF_SIZE];
+ char srcfilename_map[FILENAME_BUF_SIZE];
+ hid_t srcfile = -1; /* File with source dsets */
+ hid_t vfile = -1; /* File with virtual dset */
+ hid_t dcpl = -1; /* Dataset creation property list */
+ hid_t srcdcpl = -1; /* DCPL for source dset */
+ hid_t srcspace[3] = {-1, -1, -1}; /* Source dataspaces */
+ hid_t vspace[3] = {-1, -1, -1}; /* Virtual dset dataspaces */
+ hid_t memspace = -1; /* Memory dataspace */
+ hid_t filespace = -1; /* File dataspace */
+ hid_t srcdset[5] = {-1, -1, -1, -1, -1}; /* Source datsets */
+ hid_t vdset = -1; /* Virtual dataset */
+ hsize_t dims[2] = {6, 6}; /* Data space current size */
+ hsize_t mdims[2] = {10, 10}; /* Data space maximum size */
+ hsize_t cdims[2] = {2, 2}; /* Chunk dimensions */
+ hsize_t start[2]; /* Hyperslab start */
+ hsize_t stride[2]; /* Hyperslab stride */
+ hsize_t count[2]; /* Hyperslab count */
+ hsize_t block[2]; /* Hyperslab block */
+ int buf[10][10]; /* Write and expected read buffer */
+ int rbuf[10][10]; /* Read buffer */
+ int erbuf[10][10]; /* Expected read buffer */
+ int ndims; /* Number of dimensions */
+ int fill = -1; /* Fill value */
+ int i, j;
+
+ TESTING("virtual dataset I/O with mixed selection types")
+
+ h5_fixname(FILENAME[0], fapl, vfilename, sizeof vfilename);
+ h5_fixname(FILENAME[2], fapl, srcfilename, sizeof srcfilename);
+ h5_fixname_printf(FILENAME[2], fapl, srcfilename_map, sizeof srcfilename_map);
+
+ /* Create DCPLs */
+ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ TEST_ERROR
+ if((srcdcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ TEST_ERROR
+
+ /* Set fill value */
+ if(H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fill) < 0)
+ TEST_ERROR
+
+ /* Set chunk dimensions */
+ if(H5Pset_chunk(srcdcpl, 2, cdims) < 0)
+ TEST_ERROR
+
+ /* Create memory space */
+ if((memspace = H5Screate_simple(2, mdims, NULL)) < 0)
+ TEST_ERROR
+
+ /* Clear virtual layout in DCPL */
+ if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0)
+ TEST_ERROR
+
+ /* Create fixed mapping */
+ if((vspace[0] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ start[0] = 3;
+ start[1] = 3;
+ count[0] = 3;
+ count[1] = 3;
+ if(H5Sselect_hyperslab(vspace[0], H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ TEST_ERROR
+ if((srcspace[0] = H5Screate_simple(2, count, NULL)) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[0], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset_fixed", srcspace[0]) < 0)
+ TEST_ERROR
+
+ /* Create unlimited mapping */
+ if((vspace[1] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ start[0] = 3;
+ start[1] = 0;
+ count[0] = 1;
+ count[1] = 1;
+ block[0] = H5S_UNLIMITED;
+ block[1] = 3;
+ if(H5Sselect_hyperslab(vspace[1], H5S_SELECT_SET, start, NULL, count, block) < 0)
+ TEST_ERROR
+ dims[0] = 0;
+ dims[1] = 3;
+ if((srcspace[1] = H5Screate_simple(2, dims, block)) < 0)
+ TEST_ERROR
+ start[0] = 0;
+ if(H5Sselect_hyperslab(srcspace[1], H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[1], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset_unlim", srcspace[1]) < 0)
+ TEST_ERROR
+
+ /* Create printf mapping */
+ if((vspace[2] = H5Screate_simple(2, dims, mdims)) < 0)
+ TEST_ERROR
+ start[0] = 0;
+ start[1] = 2;
+ stride[0] = 1;
+ stride[1] = 3;
+ count[0] = 1;
+ count[1] = H5S_UNLIMITED;
+ block[0] = 3;
+ block[1] = 2;
+ if(H5Sselect_hyperslab(vspace[2], H5S_SELECT_SET, start, stride, count, block) < 0)
+ TEST_ERROR
+ if((srcspace[2] = H5Screate_simple(2, block, NULL)) < 0)
+ TEST_ERROR
+ if(H5Pset_virtual(dcpl, vspace[2], config & TEST_IO_DIFFERENT_FILE ? srcfilename_map : ".", "src_dset_printf_%b", srcspace[2]) < 0)
+ TEST_ERROR
+
+ /* Create virtual file */
+ if((vfile = H5Fcreate(vfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create source file if requested */
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if((srcfile = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ TEST_ERROR
+ } /* end if */
+ else {
+ srcfile = vfile;
+ if(H5Iinc_ref(srcfile) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Create virtual dataset */
+ if((vdset = H5Dcreate2(vfile, "v_dset", H5T_NATIVE_INT, vspace[0], H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Close srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile) < 0)
+ TEST_ERROR
+ srcfile = -1;
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 6)
+ TEST_ERROR
+ if(dims[1] != 6)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 10)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Reopen srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC)
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create fixed source dataset */
+ if((srcdset[0] = H5Dcreate2(srcfile, "src_dset_fixed", H5T_NATIVE_INT, srcspace[0], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Create unlimited source_dataset */
+ if((srcdset[1] = H5Dcreate2(srcfile, "src_dset_unlim", H5T_NATIVE_INT, srcspace[1], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Populate write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] = (i * (int)mdims[1]) + j;
+
+ /* Initialize erbuf */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ erbuf[i][j] = fill;
+
+ /* Write to srcdset[0] */
+ start[0] = 0;
+ start[1] = 0;
+ block[0] = 3;
+ block[1] = 3;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[0], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 3; i++)
+ for(j = 0; j < 3; j++)
+ erbuf[i + 3][j + 3] = buf[i][j];
+
+ /* Close srcdsets and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ for(i = 0; i < 2; i++) {
+ if(H5Dclose(srcdset[i]) < 0)
+ TEST_ERROR
+ srcdset[i] = -1;
+ } /* end for */
+
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile) < 0)
+ TEST_ERROR
+ srcfile = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 6)
+ TEST_ERROR
+ if(dims[1] != 6)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 10)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if((i >= (int)dims[0]) || (j >= (int)dims[1])) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile, "src_dset_unlim", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[1] */
+ dims[0] = 2;
+ dims[1] = 3;
+ if(H5Dset_extent(srcdset[1], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[1] */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 2; i++)
+ for(j = 0; j < 3; j++)
+ erbuf[i + 3][j] = buf[i][j];
+
+ /* Close srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile) < 0)
+ TEST_ERROR
+ srcfile = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 6)
+ TEST_ERROR
+ if(dims[1] != 6)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 10)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if((i >= (int)dims[0]) || (j >= (int)dims[1])) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcfile if config option specified */
+ if((config & TEST_IO_CLOSE_SRC) && (config & TEST_IO_DIFFERENT_FILE))
+ if((srcfile = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create first printf source dataset */
+ if((srcdset[2] = H5Dcreate2(srcfile, "src_dset_printf_0", H5T_NATIVE_INT, srcspace[2], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[2] */
+ start[0] = 0;
+ start[1] = 0;
+ block[0] = 3;
+ block[1] = 2;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[2], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 3; i++)
+ for(j = 0; j < 2; j++)
+ erbuf[i][j + 2] = buf[i][j];
+
+ /* Close srcdset[2] srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[2]) < 0)
+ TEST_ERROR
+ srcdset[2] = -1;
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile) < 0)
+ TEST_ERROR
+ srcfile = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 6)
+ TEST_ERROR
+ if(dims[1] != 6)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 10)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if((i >= (int)dims[0]) || (j >= (int)dims[1])) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile, "src_dset_unlim", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[1] */
+ dims[0] = 3;
+ dims[1] = 3;
+ if(H5Dset_extent(srcdset[1], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to new area of srcdset[1] */
+ start[0] = 0;
+ start[1] = 0;
+ block[0] = 1;
+ block[1] = 3;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if((filespace = H5Dget_space(srcdset[1])) < 0)
+ TEST_ERROR
+ start[0] = 2;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 3; i++)
+ erbuf[5][i] = buf[0][i];
+
+ /* Close srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile) < 0)
+ TEST_ERROR
+ srcfile = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 6)
+ TEST_ERROR
+ if(dims[1] != 6)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 10)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if((i >= (int)dims[0]) || (j >= (int)dims[1])) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcfile if config option specified */
+ if((config & TEST_IO_CLOSE_SRC) && (config & TEST_IO_DIFFERENT_FILE))
+ if((srcfile = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create second printf source dataset, this time without using srcdcpl */
+ if((srcdset[3] = H5Dcreate2(srcfile, "src_dset_printf_1", H5T_NATIVE_INT, srcspace[2], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[3] */
+ start[0] = 0;
+ start[1] = 0;
+ block[0] = 3;
+ block[1] = 2;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[3], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 3; i++)
+ for(j = 0; j < 2; j++)
+ erbuf[i][j + 5] = buf[i][j];
+
+ /* Close srcdset[3] srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[3]) < 0)
+ TEST_ERROR
+ srcdset[3] = -1;
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile) < 0)
+ TEST_ERROR
+ srcfile = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 6)
+ TEST_ERROR
+ if(dims[1] != 7)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 10)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if((i >= (int)dims[0]) || (j >= (int)dims[1])) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(config & TEST_IO_DIFFERENT_FILE)
+ if((srcfile = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((srcdset[1] = H5Dopen2(srcfile, "src_dset_unlim", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Extend srcdset[1] */
+ dims[0] = 7;
+ dims[1] = 3;
+ if(H5Dset_extent(srcdset[1], dims) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to new area of srcdset[1] */
+ start[0] = 0;
+ start[1] = 0;
+ block[0] = 4;
+ block[1] = 3;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if((filespace = H5Dget_space(srcdset[1])) < 0)
+ TEST_ERROR
+ start[0] = 3;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[1], H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 4; i++)
+ for(j = 0; j < 3; j++)
+ erbuf[i + 6][j] = buf[i][j];
+
+ /* Close srcdset[1] and srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[1]) < 0)
+ TEST_ERROR
+ srcdset[1] = -1;
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile) < 0)
+ TEST_ERROR
+ srcfile = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 7)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 10)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++) {
+ if(j >= (int)dims[1]) {
+ if(rbuf[i][j] != 0)
+ TEST_ERROR
+ } /* end if */
+ else
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+ } /* end for */
+
+ /* Reopen srcfile if config option specified */
+ if((config & TEST_IO_CLOSE_SRC) && (config & TEST_IO_DIFFERENT_FILE))
+ if((srcfile = H5Fopen(srcfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+
+ /* Create third printf source dataset */
+ if((srcdset[4] = H5Dcreate2(srcfile, "src_dset_printf_2", H5T_NATIVE_INT, srcspace[2], H5P_DEFAULT, srcdcpl, H5P_DEFAULT)) < 0)
+ TEST_ERROR
+
+ /* Adjust write buffer */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ buf[i][j] += (int)mdims[0] * (int)mdims[1];
+
+ /* Write to srcdset[4] */
+ start[0] = 0;
+ start[1] = 0;
+ block[0] = 3;
+ block[1] = 2;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, block, NULL) < 0)
+ TEST_ERROR
+ if(H5Dwrite(srcdset[4], H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, buf[0]) < 0)
+ TEST_ERROR
+
+ /* Update erbuf */
+ for(i = 0; i < 3; i++)
+ for(j = 0; j < 2; j++)
+ erbuf[i][j + 8] = buf[i][j];
+
+ /* Close srcdset[4] srcfile if config option specified */
+ if(config & TEST_IO_CLOSE_SRC) {
+ if(H5Dclose(srcdset[4]) < 0)
+ TEST_ERROR
+ srcdset[4] = -1;
+ if(config & TEST_IO_DIFFERENT_FILE) {
+ if(H5Fclose(srcfile) < 0)
+ TEST_ERROR
+ srcfile = -1;
+ } /* end if */
+ } /* end if */
+
+ /* Reopen virtual dataset and file if config option specified */
+ if(config & TEST_IO_REOPEN_VIRT) {
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ if((vfile = H5Fopen(vfilename, H5F_ACC_RDWR, fapl)) < 0)
+ TEST_ERROR
+ if((vdset = H5Dopen2(vfile, "v_dset", H5P_DEFAULT)) < 0)
+ TEST_ERROR
+ } /* end if */
+
+ /* Get VDS space */
+ if((filespace = H5Dget_space(vdset)) < 0)
+ TEST_ERROR
+
+ /* Get VDS space dimensions */
+ if((ndims = H5Sget_simple_extent_ndims(filespace)) < 0)
+ TEST_ERROR
+ if(ndims != 2)
+ TEST_ERROR
+ if(H5Sget_simple_extent_dims(filespace, dims, mdims) < 0)
+ TEST_ERROR
+ if(dims[0] != 10)
+ TEST_ERROR
+ if(dims[1] != 10)
+ TEST_ERROR
+ if(mdims[0] != 10)
+ TEST_ERROR
+ if(mdims[1] != 10)
+ TEST_ERROR
+
+ /* Close filespace */
+ if(H5Sclose(filespace) < 0)
+ TEST_ERROR
+
+ /* Read data through virtual dataset */
+ /* Reset rbuf */
+ HDmemset(rbuf[0], 0, sizeof(rbuf));
+
+ /* Select hyperslab in memory space */
+ start[0] = 0;
+ start[1] = 0;
+ if(H5Sselect_hyperslab(memspace, H5S_SELECT_SET, start, NULL, dims, NULL) < 0)
+ TEST_ERROR
+
+ /* Read data */
+ if(H5Dread(vdset, H5T_NATIVE_INT, memspace, H5S_ALL, H5P_DEFAULT, rbuf[0]) < 0)
+ TEST_ERROR
+
+ /* Verify read data */
+ for(i = 0; i < (int)mdims[0]; i++)
+ for(j = 0; j < (int)mdims[1]; j++)
+ if(rbuf[i][j] != erbuf[i][j])
+ TEST_ERROR
+
+ /* Close */
+ if(!(config & TEST_IO_CLOSE_SRC)) {
+ for(i = 0; i < 5; i++) {
+ if(H5Dclose(srcdset[i]) < 0)
+ TEST_ERROR
+ srcdset[i] = -1;
+ } /* end for */
+ if(H5Fclose(srcfile) < 0)
+ TEST_ERROR
+ srcfile = -1;
+ } /* end if */
+ else if(!(config & TEST_IO_DIFFERENT_FILE)) {
+ if(H5Fclose(srcfile) < 0)
+ TEST_ERROR
+ srcfile = -1;
+ } /* end if */
+ if(H5Dclose(vdset) < 0)
+ TEST_ERROR
+ vdset = -1;
+ if(H5Fclose(vfile) < 0)
+ TEST_ERROR
+ vfile = -1;
+ for(i = 0; i < (int)(sizeof(srcspace) / sizeof(srcspace[0])); i++) {
+ if(H5Sclose(srcspace[i]) < 0)
+ TEST_ERROR
+ srcspace[i] = -1;
+ } /* end for */
+ for(i = 0; i < (int)(sizeof(vspace) / sizeof(vspace[0])); i++) {
+ if(H5Sclose(vspace[i]) < 0)
+ TEST_ERROR
+ vspace[i] = -1;
+ } /* end for */
+ if(H5Pclose(dcpl) < 0)
+ TEST_ERROR
+ dcpl = -1;
+ if(H5Pclose(srcdcpl) < 0)
+ TEST_ERROR
+ srcdcpl = -1;
+ if(H5Sclose(memspace) < 0)
+ TEST_ERROR
+ memspace = -1;
+
+ PASSED();
+ return 0;
+
+error:
+ H5E_BEGIN_TRY {
+ for(i = 0; i < (int)(sizeof(srcdset) / sizeof(srcdset[0])); i++) {
+ if(srcdset[i] >= 0)
+ (void)H5Dclose(srcdset[i]);
+ } /* end for */
+ if(vdset >= 0)
+ (void)H5Dclose(vdset);
+ if(srcfile >= 0)
+ (void)H5Fclose(srcfile);
+ if(vfile >= 0)
+ (void)H5Fclose(vfile);
+ for(i = 0; i < (int)(sizeof(srcspace) / sizeof(srcspace[0])); i++) {
+ if(srcspace[i] >= 0)
+ (void)H5Sclose(srcspace[i]);
+ } /* end for */
+ for(i = 0; i < (int)(sizeof(vspace) / sizeof(vspace[0])); i++) {
+ if(vspace[i] >= 0)
+ (void)H5Sclose(vspace[i]);
+ } /* end for */
+ if(filespace >= 0)
+ (void)H5Sclose(filespace);
+ if(memspace >= 0)
+ (void)H5Sclose(memspace);
+ if(dcpl >= 0)
+ (void)H5Pclose(dcpl);
+ if(srcdcpl >= 0)
+ (void)H5Pclose(srcdcpl);
+ } H5E_END_TRY;
+
+ return 1;
+} /* end test_printf() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: main
+ *
+ * Purpose: Tests datasets with virtual layout
+ *
+ * Return: Success: exit(0)
+ *
+ * Failure: exit(1)
+ *
+ * Programmer: Neil Fortner
+ * Tuesday, February 17, 2015
+ *
+ *-------------------------------------------------------------------------
+ */
+int
+main(void)
+{
+ char filename[FILENAME_BUF_SIZE];
+ hid_t fapl;
+ int test_api_config;
+ unsigned bit_config;
+ int nerrors = 0;
+
+ /* Testing setup */
+ h5_reset();
+ fapl = h5_fileaccess();
+
+ h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
+
+ for(test_api_config = (int)TEST_API_BASIC; test_api_config < (int)TEST_API_NTESTS; test_api_config++)
+ nerrors += test_api((test_api_config_t)test_api_config, fapl);
+ for(bit_config = 0; bit_config < TEST_IO_NTESTS; bit_config++) {
+ printf("Config: %s%s%s\n", bit_config & TEST_IO_CLOSE_SRC ? "closed source dataset, " : "", bit_config & TEST_IO_DIFFERENT_FILE ? "different source file" : "same source file", bit_config & TEST_IO_REOPEN_VIRT ? ", reopen virtual file" : "");
+ nerrors += test_basic_io(bit_config, fapl);
+ nerrors += test_unlim(bit_config, fapl);
+ nerrors += test_printf(bit_config, fapl);
+ nerrors += test_all(bit_config, fapl);
+ } /* end for */
+
+ /* Verify symbol table messages are cached */
+ nerrors += (h5_verify_cached_stabs(FILENAME, fapl) < 0 ? 1 : 0);
+
+ if(nerrors)
+ goto error;
+ printf("All virtual dataset tests passed.\n");
+// h5_cleanup(FILENAME, fapl);
+
+ return 0;
+
+error:
+ nerrors = MAX(1, nerrors);
+ printf("***** %d VIRTUAL DATASET TEST%s FAILED! *****\n",
+ nerrors, 1 == nerrors ? "" : "S");
+ return 1;
+} /* end main() */
+
diff --git a/tools/h5diff/CMakeTests.cmake b/tools/h5diff/CMakeTests.cmake
index c650dbe..33d0971 100644
--- a/tools/h5diff/CMakeTests.cmake
+++ b/tools/h5diff/CMakeTests.cmake
@@ -4,7 +4,7 @@
### T E S T I N G ###
##############################################################################
##############################################################################
-
+
# --------------------------------------------------------------------
# Copy all the HDF5 files from the test directory into the source directory
# --------------------------------------------------------------------
@@ -50,6 +50,30 @@
${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/compounds_array_vlen2.h5
${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/non_comparables1.h5
${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/non_comparables2.h5
+ # tools/testfiles/vds
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_a.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_b.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_c.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_d.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_e.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_f.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_vds.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_a.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_b.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_c.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_d.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_e.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_vds.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/3_1_vds.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/3_2_vds.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/4_0.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/4_1.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/4_2.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/4_vds.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/5_a.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/5_b.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/5_c.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/5_vds.h5
)
set (LIST_OTHER_TEST_FILES
@@ -231,6 +255,9 @@
${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_710.txt
${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_80.txt
${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_90.txt
+ ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_v1.txt
+ ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_v2.txt
+ ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_v3.txt
)
# Make testfiles dir under build dir
@@ -283,7 +310,7 @@
ARGS -E copy_if_different ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_104w.txt ${PROJECT_BINARY_DIR}/testfiles/h5diff_104.txt
)
endif (WIN32)
-
+
##############################################################################
##############################################################################
### T H E T E S T S M A C R O S ###
@@ -399,7 +426,7 @@
##############################################################################
# --------------------------------------------------------------------
- # test file names
+ # test file names
# --------------------------------------------------------------------
set (FILE1 h5diff_basic1.h5)
set (FILE2 h5diff_basic2.h5)
@@ -425,7 +452,7 @@
set (DANGLE_LINK_FILE2 h5diff_danglelinks2.h5)
set (GRP_RECURSE_FILE1 h5diff_grp_recurse1.h5)
set (GRP_RECURSE_FILE2 h5diff_grp_recurse2.h5)
- # group recursive - same structure via external links through files
+ # group recursive - same structure via external links through files
set (GRP_RECURSE1_EXT h5diff_grp_recurse_ext1.h5)
set (GRP_RECURSE2_EXT1 h5diff_grp_recurse_ext2-1.h5)
set (GRP_RECURSE2_EXT2 h5diff_grp_recurse_ext2-2.h5)
@@ -447,13 +474,20 @@
# attrs with verbose option level
set (ATTR_VERBOSE_LEVEL_FILE1 h5diff_attr_v_level1.h5)
set (ATTR_VERBOSE_LEVEL_FILE2 h5diff_attr_v_level2.h5)
+# VDS tests
+ set (FILEV1 1_vds.h5)
+ set (FILEV2 2_vds.h5)
+ set (FILEV3_1 3_1_vds.h5)
+ set (FILEV3_2 3_2_vds.h5)
+ set (FILEV4 4_vds.h5)
+ set (FILEV5 5_vds.h5)
if (HDF5_ENABLE_USING_MEMCHECKER)
# Remove any output file left over from previous test run
add_test (
NAME H5DIFF-clearall-objects
COMMAND ${CMAKE_COMMAND}
- -E remove
+ -E remove
h5diff_10.out
h5diff_10.out.err
h5diff_100.out
@@ -800,6 +834,12 @@
h5diff_80.out.err
h5diff_90.out
h5diff_90.out.err
+ h5diff_v1.out
+ h5diff_v1.out.err
+ h5diff_v2.out
+ h5diff_v2.out.err
+ h5diff_v3.out
+ h5diff_v3.out.err
)
set_tests_properties (H5DIFF-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
if (NOT "${last_test}" STREQUAL "")
@@ -816,13 +856,13 @@
ADD_H5_TEST (h5diff_10 0 -h)
# 1.1 normal mode
-ADD_H5_TEST (h5diff_11 1 ${FILE1} ${FILE2})
+ADD_H5_TEST (h5diff_11 1 ${FILE1} ${FILE2})
# 1.2 normal mode with objects
ADD_H5_TEST (h5diff_12 1 ${FILE1} ${FILE2} g1/dset1 g1/dset2)
# 1.3 report mode
-ADD_H5_TEST (h5diff_13 1 -r ${FILE1} ${FILE2})
+ADD_H5_TEST (h5diff_13 1 -r ${FILE1} ${FILE2})
# 1.4 report mode with objects
ADD_H5_TEST (h5diff_14 1 -r ${FILE1} ${FILE2} g1/dset1 g1/dset2)
@@ -840,7 +880,7 @@ ADD_H5_TEST (h5diff_16_2 1 --verbose --relative=0.02 ${FILE1} ${FILE1} g1/dset7
ADD_H5_TEST (h5diff_16_3 1 -v -p 0.02 ${FILE1} ${FILE1} g1/dset9 g1/dset10)
# 1.7 verbose mode
-ADD_H5_TEST (h5diff_17 1 -v ${FILE1} ${FILE2})
+ADD_H5_TEST (h5diff_17 1 -v ${FILE1} ${FILE2})
# 1.7 test 32-bit INFINITY
ADD_H5_TEST (h5diff_171 0 -v ${FILE1} ${FILE1} /g1/fp19 /g1/fp19_COPY)
@@ -848,8 +888,8 @@ ADD_H5_TEST (h5diff_171 0 -v ${FILE1} ${FILE1} /g1/fp19 /g1/fp19_COPY)
# 1.7 test 64-bit INFINITY
ADD_H5_TEST (h5diff_172 0 -v ${FILE1} ${FILE1} /g1/fp20 /g1/fp20_COPY)
-# 1.8 quiet mode
-ADD_H5_TEST (h5diff_18 1 -q ${FILE1} ${FILE2})
+# 1.8 quiet mode
+ADD_H5_TEST (h5diff_18 1 -q ${FILE1} ${FILE2})
# 1.8 -v and -q
ADD_H5_TEST (h5diff_18_1 2 -v -q ${FILE1} ${FILE2})
@@ -878,7 +918,7 @@ ADD_H5_TEST (h5diff_23 0 -v ${FILE3} ${FILE3} g1 g1)
ADD_H5_TEST (h5diff_24 0 -v ${FILE3} ${FILE3} t1 t1)
# 2.5
-ADD_H5_TEST (h5diff_25 0 -v ${FILE3} ${FILE3} l1 l1)
+ADD_H5_TEST (h5diff_25 0 -v ${FILE3} ${FILE3} l1 l1)
# 2.6
ADD_H5_TEST (h5diff_26 0 -v ${FILE3} ${FILE3} g1 g2)
@@ -920,7 +960,7 @@ ADD_H5_TEST (h5diff_57 0 -v ${FILE4} ${FILE4} dset7a dset7b)
# 5.8 (region reference)
ADD_H5_TEST (h5diff_58 1 -v ${FILE7} ${FILE8} refreg)
-# test for both dset and attr with same type but with different size
+# test for both dset and attr with same type but with different size
# ( HDDFV-7942 )
ADD_H5_TEST (h5diff_59 0 -v ${FILE4} ${FILE4} dset11a dset11b)
@@ -929,13 +969,13 @@ ADD_H5_TEST (h5diff_59 0 -v ${FILE4} ${FILE4} dset11a dset11b)
# ##############################################################################
# 6.0: Check if the command line number of arguments is less than 3
-ADD_H5_TEST (h5diff_600 1 ${FILE1})
+ADD_H5_TEST (h5diff_600 1 ${FILE1})
-# 6.1: Check if non-exist object name is specified
+# 6.1: Check if non-exist object name is specified
ADD_H5_TEST (h5diff_601 2 ${FILE1} ${FILE1} nono_obj)
# ##############################################################################
-# # -d
+# # -d
# ##############################################################################
# 6.3: negative value
@@ -953,7 +993,7 @@ ADD_H5_TEST (h5diff_606 1 -d 0x1 ${FILE1} ${FILE2} g1/dset3 g1/dset4)
# 6.7: string
ADD_H5_TEST (h5diff_607 1 -d "1" ${FILE1} ${FILE2} g1/dset3 g1/dset4)
-# 6.8: use system epsilon
+# 6.8: use system epsilon
ADD_H5_TEST (h5diff_608 1 --use-system-epsilon ${FILE1} ${FILE2} g1/dset3 g1/dset4)
# 6.9: number larger than biggest difference
@@ -1032,12 +1072,12 @@ ADD_H5_TEST (h5diff_631 0 -v --use-system-epsilon ${FILE1} ${FILE1} g1/fp18 g1/f
# ##############################################################################
# 7. attributes
# ##############################################################################
-ADD_H5_TEST (h5diff_70 1 -v ${FILE5} ${FILE6})
+ADD_H5_TEST (h5diff_70 1 -v ${FILE5} ${FILE6})
# ##################################################
# attrs with verbose option level
# ##################################################
-ADD_H5_TEST (h5diff_700 1 -v1 ${FILE5} ${FILE6})
+ADD_H5_TEST (h5diff_700 1 -v1 ${FILE5} ${FILE6})
ADD_H5_TEST (h5diff_701 1 -v2 ${FILE5} ${FILE6})
ADD_H5_TEST (h5diff_702 1 --verbose=1 ${FILE5} ${FILE6})
ADD_H5_TEST (h5diff_703 1 --verbose=2 ${FILE5} ${FILE6})
@@ -1054,7 +1094,7 @@ ADD_H5_TEST (h5diff_706 1 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_F
# different attr number , same attr name (intersected)
ADD_H5_TEST (h5diff_707 1 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_FILE2} /g2)
-# different attr number , all different attr name
+# different attr number , all different attr name
ADD_H5_TEST (h5diff_708 1 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_FILE2} /g3)
# when no attributes exist in both objects
@@ -1066,31 +1106,31 @@ ADD_H5_TEST (h5diff_710 1 -v2 ${ATTR_VERBOSE_LEVEL_FILE1} ${ATTR_VERBOSE_LEVEL_F
# ##############################################################################
# 8. all dataset datatypes
# ##############################################################################
-ADD_H5_TEST (h5diff_80 1 -v ${FILE7} ${FILE8})
+ADD_H5_TEST (h5diff_80 1 -v ${FILE7} ${FILE8})
# 9. compare a file with itself
ADD_H5_TEST (h5diff_90 0 -v ${FILE2} ${FILE2})
# 10. read by hyperslab, print indexes
-ADD_H5_TEST (h5diff_100 1 -v ${FILE9} ${FILE10})
+ADD_H5_TEST (h5diff_100 1 -v ${FILE9} ${FILE10})
# 11. floating point comparison
-ADD_H5_TEST (h5diff_101 1 -v ${FILE1} ${FILE1} g1/d1 g1/d2)
+ADD_H5_TEST (h5diff_101 1 -v ${FILE1} ${FILE1} g1/d1 g1/d2)
-ADD_H5_TEST (h5diff_102 1 -v ${FILE1} ${FILE1} g1/fp1 g1/fp2)
+ADD_H5_TEST (h5diff_102 1 -v ${FILE1} ${FILE1} g1/fp1 g1/fp2)
-# with --use-system-epsilon for double value. expect less differences
+# with --use-system-epsilon for double value. expect less differences
ADD_H5_TEST (h5diff_103 1 -v --use-system-epsilon ${FILE1} ${FILE1} g1/d1
-g1/d2)
+g1/d2)
# with --use-system-epsilon for float value. expect less differences
ADD_H5_TEST (h5diff_104 1 -v --use-system-epsilon ${FILE1} ${FILE1} g1/fp1
g1/fp2)
# not comparable -c flag
-ADD_H5_TEST (h5diff_200 0 ${FILE2} ${FILE2} g2/dset1 g2/dset2)
+ADD_H5_TEST (h5diff_200 0 ${FILE2} ${FILE2} g2/dset1 g2/dset2)
-ADD_H5_TEST (h5diff_201 0 -c ${FILE2} ${FILE2} g2/dset1 g2/dset2)
+ADD_H5_TEST (h5diff_201 0 -c ${FILE2} ${FILE2} g2/dset1 g2/dset2)
ADD_H5_TEST (h5diff_202 0 -c ${FILE2} ${FILE2} g2/dset2 g2/dset3)
@@ -1106,9 +1146,9 @@ ADD_H5_TEST (h5diff_206 0 -c ${FILE2} ${FILE2} g2/dset7 g2/dset8)
ADD_H5_TEST (h5diff_207 0 -c ${FILE2} ${FILE2} g2/dset8 g2/dset9)
# not comparable in dataspace of zero dimension size
-ADD_H5_TEST (h5diff_208 0 -c ${FILE19} ${FILE20})
+ADD_H5_TEST (h5diff_208 0 -c ${FILE19} ${FILE20})
-# non-comparable dataset with comparable attribute, and other comparable datasets.
+# non-comparable dataset with comparable attribute, and other comparable datasets.
# All the rest comparables should display differences.
ADD_H5_TEST (h5diff_220 1 -c non_comparables1.h5 non_comparables2.h5 /g1)
@@ -1221,28 +1261,28 @@ ADD_H5_TEST (h5diff_425 1 --follow-symlinks -v ${FILE17} ${FILE17} /ext_link_to_
ADD_H5_TEST (h5diff_450 1 --follow-symlinks -v ${DANGLE_LINK_FILE1} ${DANGLE_LINK_FILE2})
# dangling links --follow-symlinks and --no-dangling-links (FILE to FILE)
-ADD_H5_TEST (h5diff_451 2 --follow-symlinks -v --no-dangling-links ${DANGLE_LINK_FILE1} ${DANGLE_LINK_FILE2})
+ADD_H5_TEST (h5diff_451 2 --follow-symlinks -v --no-dangling-links ${DANGLE_LINK_FILE1} ${DANGLE_LINK_FILE2})
# try --no-dangling-links without --follow-symlinks options
ADD_H5_TEST (h5diff_452 2 --no-dangling-links ${FILE13} ${FILE13})
# dangling link found for soft links (FILE to FILE)
-ADD_H5_TEST (h5diff_453 2 --follow-symlinks -v --no-dangling-links ${FILE13} ${FILE13})
+ADD_H5_TEST (h5diff_453 2 --follow-symlinks -v --no-dangling-links ${FILE13} ${FILE13})
# dangling link found for soft links (obj to obj)
-ADD_H5_TEST (h5diff_454 2 --follow-symlinks -v --no-dangling-links ${FILE13} ${FILE13} /softlink_dset2 /softlink_noexist)
+ADD_H5_TEST (h5diff_454 2 --follow-symlinks -v --no-dangling-links ${FILE13} ${FILE13} /softlink_dset2 /softlink_noexist)
# dangling link found for soft links (obj to obj) Both dangle links
-ADD_H5_TEST (h5diff_455 2 --follow-symlinks -v --no-dangling-links ${FILE13} ${FILE13} /softlink_noexist /softlink_noexist)
+ADD_H5_TEST (h5diff_455 2 --follow-symlinks -v --no-dangling-links ${FILE13} ${FILE13} /softlink_noexist /softlink_noexist)
# dangling link found for ext links (FILE to FILE)
-ADD_H5_TEST (h5diff_456 2 --follow-symlinks -v --no-dangling-links ${FILE15} ${FILE15})
+ADD_H5_TEST (h5diff_456 2 --follow-symlinks -v --no-dangling-links ${FILE15} ${FILE15})
# dangling link found for ext links (obj to obj). target file exist
-ADD_H5_TEST (h5diff_457 2 --follow-symlinks -v --no-dangling-links ${FILE15} ${FILE15} /ext_link_dset1 /ext_link_noexist1)
+ADD_H5_TEST (h5diff_457 2 --follow-symlinks -v --no-dangling-links ${FILE15} ${FILE15} /ext_link_dset1 /ext_link_noexist1)
# dangling link found for ext links (obj to obj). target file NOT exist
-ADD_H5_TEST (h5diff_458 2 --follow-symlinks -v --no-dangling-links ${FILE15} ${FILE15} /ext_link_dset1 /ext_link_noexist2)
+ADD_H5_TEST (h5diff_458 2 --follow-symlinks -v --no-dangling-links ${FILE15} ${FILE15} /ext_link_dset1 /ext_link_noexist2)
# dangling link found for ext links (obj to obj). Both dangle links
ADD_H5_TEST (h5diff_459 2 --follow-symlinks -v --no-dangling-links ${FILE15} ${FILE15} /ext_link_noexist1 /ext_link_noexist2)
@@ -1261,9 +1301,9 @@ ADD_H5_TEST (h5diff_468 0 -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_dan
ADD_H5_TEST (h5diff_469 1 -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_link2)
#---------------------------------------------------
-# dangling links without follow symlink
+# dangling links without follow symlink
# (HDFFV-7998)
-# test - soft dangle links (same and different paths),
+# test - soft dangle links (same and different paths),
# - external dangle links (same and different paths)
ADD_H5_TEST (h5diff_471 1 -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5)
ADD_H5_TEST (h5diff_472 0 -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /soft_link1)
@@ -1275,7 +1315,7 @@ ADD_H5_TEST (h5diff_475 1 -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_
# ##############################################################################
# # test for group diff recursivly
# ##############################################################################
-# root
+# root
ADD_H5_TEST (h5diff_500 1 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} / /)
ADD_H5_TEST (h5diff_501 1 -v --follow-symlinks ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} / /)
@@ -1309,7 +1349,7 @@ ADD_H5_TEST (h5diff_513 1 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /slink_gr
ADD_H5_TEST (h5diff_514 1 -v --follow-symlinks ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /slink_grp10 /slink_grp11)
###############################################################################
-# Test for group recursive diff via multi-linked external links
+# Test for group recursive diff via multi-linked external links
# With follow-symlinks, file $GRP_RECURSE1_EXT and $GRP_RECURSE2_EXT1 should
# be same with the external links.
###############################################################################
@@ -1332,7 +1372,7 @@ ADD_H5_TEST (h5diff_480 0 -v --exclude-path /group1/dset3 ${EXCLUDE_FILE1_1} ${E
ADD_H5_TEST (h5diff_481 1 -v ${EXCLUDE_FILE1_1} ${EXCLUDE_FILE1_2})
#
-# Different structure, different names.
+# Different structure, different names.
#
# Exclude all the different objects. Expect return - same
ADD_H5_TEST (h5diff_482 0 -v --exclude-path "/group1" --exclude-path "/dset1" ${EXCLUDE_FILE2_1} ${EXCLUDE_FILE2_2})
@@ -1364,10 +1404,10 @@ ADD_H5_TEST (h5diff_530 0 -v ${COMP_VL_STRS_FILE} ${COMP_VL_STRS_FILE} /group /
ADD_H5_TEST (h5diff_540 1 -v ${COMPS_ARRAY_VLEN_FILE1} ${COMPS_ARRAY_VLEN_FILE2})
# ##############################################################################
-# # Test mutually exclusive options
+# # Test mutually exclusive options
# ##############################################################################
#
-# Test with -d , -p and --use-system-epsilon.
+# Test with -d , -p and --use-system-epsilon.
ADD_H5_TEST (h5diff_640 1 -v -d 5 -p 0.05 --use-system-epsilon ${FILE1} ${FILE2} /g1/dset3 /g1/dset4)
ADD_H5_TEST (h5diff_641 1 -v -d 5 -p 0.05 ${FILE1} ${FILE2} /g1/dset3 /g1/dset4)
ADD_H5_TEST (h5diff_642 1 -v -p 0.05 -d 5 ${FILE1} ${FILE2} /g1/dset3 /g1/dset4)
@@ -1375,3 +1415,9 @@ ADD_H5_TEST (h5diff_643 1 -v -d 5 --use-system-epsilon ${FILE1} ${FILE2} /g1/dse
ADD_H5_TEST (h5diff_644 1 -v --use-system-epsilon -d 5 ${FILE1} ${FILE2} /g1/dset3 /g1/dset4)
ADD_H5_TEST (h5diff_645 1 -v -p 0.05 --use-system-epsilon ${FILE1} ${FILE2} /g1/dset3 /g1/dset4)
ADD_H5_TEST (h5diff_646 1 -v --use-system-epsilon -p 0.05 ${FILE1} ${FILE2} /g1/dset3 /g1/dset4)
+
+# VDS
+ADD_H5_TEST (h5diff_v1 0 -v ${FILEV1} ${FILEV2})
+ADD_H5_TEST (h5diff_v2 0 -r ${FILEV1} ${FILEV2})
+ADD_H5_TEST (h5diff_v3 0 -c ${FILEV1} ${FILEV2})
+
diff --git a/tools/h5diff/testfiles/h5diff_v1.txt b/tools/h5diff/testfiles/h5diff_v1.txt
new file mode 100644
index 0000000..31a3eae
--- /dev/null
+++ b/tools/h5diff/testfiles/h5diff_v1.txt
@@ -0,0 +1,18 @@
+
+file1 file2
+---------------------------------------
+ x x /
+ x x /vds_dset
+
+group : </> and </>
+0 differences found
+dataset: </vds_dset> and </vds_dset>
+Not comparable: </vds_dset> or </vds_dset> is an empty dataset
+Not comparable: </vds_dset> has rank 3, dimensions [5x18x8], max dimensions [18446744073709551615x18x8]
+and </vds_dset> has rank 3, dimensions [6x8x14], max dimensions [18446744073709551615x8x14]
+0 differences found
+--------------------------------
+Some objects are not comparable
+--------------------------------
+Use -c for a list of objects without details of differences.
+EXIT CODE: 0
diff --git a/tools/h5diff/testfiles/h5diff_v2.txt b/tools/h5diff/testfiles/h5diff_v2.txt
new file mode 100644
index 0000000..aa327b1
--- /dev/null
+++ b/tools/h5diff/testfiles/h5diff_v2.txt
@@ -0,0 +1,7 @@
+dataset: </vds_dset> and </vds_dset>
+0 differences found
+--------------------------------
+Some objects are not comparable
+--------------------------------
+Use -c for a list of objects.
+EXIT CODE: 0
diff --git a/tools/h5diff/testfiles/h5diff_v3.txt b/tools/h5diff/testfiles/h5diff_v3.txt
new file mode 100644
index 0000000..8c5d2a2
--- /dev/null
+++ b/tools/h5diff/testfiles/h5diff_v3.txt
@@ -0,0 +1,4 @@
+Not comparable: </vds_dset> or </vds_dset> is an empty dataset
+Not comparable: </vds_dset> has rank 3, dimensions [5x18x8], max dimensions [18446744073709551615x18x8]
+and </vds_dset> has rank 3, dimensions [6x8x14], max dimensions [18446744073709551615x8x14]
+EXIT CODE: 0
diff --git a/tools/h5diff/testh5diff.sh.in b/tools/h5diff/testh5diff.sh.in
index 3be0b80..07fa7ba 100644
--- a/tools/h5diff/testh5diff.sh.in
+++ b/tools/h5diff/testh5diff.sh.in
@@ -120,6 +120,29 @@ $SRC_H5DIFF_TESTFILES/h5diff_attr_v_level2.h5
$SRC_H5DIFF_TESTFILES/h5diff_enum_invalid_values.h5
$SRC_H5DIFF_TESTFILES/non_comparables1.h5
$SRC_H5DIFF_TESTFILES/non_comparables2.h5
+$SRC_TOOLS_TESTFILES/vds/1_a.h5
+$SRC_TOOLS_TESTFILES/vds/1_b.h5
+$SRC_TOOLS_TESTFILES/vds/1_c.h5
+$SRC_TOOLS_TESTFILES/vds/1_d.h5
+$SRC_TOOLS_TESTFILES/vds/1_e.h5
+$SRC_TOOLS_TESTFILES/vds/1_f.h5
+$SRC_TOOLS_TESTFILES/vds/1_vds.h5
+$SRC_TOOLS_TESTFILES/vds/2_a.h5
+$SRC_TOOLS_TESTFILES/vds/2_b.h5
+$SRC_TOOLS_TESTFILES/vds/2_c.h5
+$SRC_TOOLS_TESTFILES/vds/2_d.h5
+$SRC_TOOLS_TESTFILES/vds/2_e.h5
+$SRC_TOOLS_TESTFILES/vds/2_vds.h5
+$SRC_TOOLS_TESTFILES/vds/3_1_vds.h5
+$SRC_TOOLS_TESTFILES/vds/3_2_vds.h5
+$SRC_TOOLS_TESTFILES/vds/4_0.h5
+$SRC_TOOLS_TESTFILES/vds/4_1.h5
+$SRC_TOOLS_TESTFILES/vds/4_2.h5
+$SRC_TOOLS_TESTFILES/vds/4_vds.h5
+$SRC_TOOLS_TESTFILES/vds/5_a.h5
+$SRC_TOOLS_TESTFILES/vds/5_b.h5
+$SRC_TOOLS_TESTFILES/vds/5_c.h5
+$SRC_TOOLS_TESTFILES/vds/5_vds.h5
"
LIST_OTHER_TEST_FILES="
@@ -331,10 +354,10 @@ COPY_TESTFILES_TO_TESTDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $TESTDIR
+ $CP -f $tstfile $TESTDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
-
+
# Comment out this to CREATE expected file
exit $EXIT_FAILURE
fi
@@ -362,23 +385,23 @@ CLEAN_TESTFILES_AND_TESTDIR()
while [ $# -gt 0 ]; do
case "$1" in
-p) # reset the tool name and bin to run ph5diff tests
- TESTNAME=ph5diff
- H5DIFF=ph5diff # The tool name
- H5DIFF_BIN=`pwd`/$H5DIFF
- pmode=yes
- shift
- ;;
+ TESTNAME=ph5diff
+ H5DIFF=ph5diff # The tool name
+ H5DIFF_BIN=`pwd`/$H5DIFF
+ pmode=yes
+ shift
+ ;;
-h) # print help page
- echo "$0 [-p] [-h]"
- echo " -p run ph5diff tests"
- echo " -h print help page"
- shift
- exit 0
- ;;
+ echo "$0 [-p] [-h]"
+ echo " -p run ph5diff tests"
+ echo " -h print help page"
+ shift
+ exit 0
+ ;;
*) # unknown option
echo "$0: Unknown option ($1)"
- exit 1
- ;;
+ exit 1
+ ;;
esac
done
@@ -429,11 +452,11 @@ TOOLTEST() {
# Run test.
TESTING $H5DIFF $@
(
- #echo "#############################"
- #echo "Expected output for '$H5DIFF $@'"
- #echo "#############################"
- cd $TESTDIR
- eval $RUNCMD $H5DIFF_BIN "$@"
+ #echo "#############################"
+ #echo "Expected output for '$H5DIFF $@'"
+ #echo "#############################"
+ cd $TESTDIR
+ eval $RUNCMD $H5DIFF_BIN "$@"
) >$actual 2>$actual_err
EXIT_CODE=$?
# save actual and actual_err in case they are needed later.
@@ -442,9 +465,9 @@ TOOLTEST() {
cp $actual_err $actual_err_sav
STDERR_FILTER $actual_err
cat $actual_err >> $actual
- # don't add exit code check in pmode, as it causes failure. (exit code
+ # don't add exit code check in pmode, as it causes failure. (exit code
# is from mpirun not tool)
- # if any problem occurs relate to an exit code, it will be caught in
+ # if any problem occurs relate to an exit code, it will be caught in
# serial mode, so the test is fullfilled.
if test $h5haveexitcode = 'yes' -a -z "$pmode"; then
echo "EXIT CODE: $EXIT_CODE" >> $actual
@@ -462,7 +485,7 @@ TOOLTEST() {
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
else
- # parallel mode output are often of different ordering from serial
+ # parallel mode output are often of different ordering from serial
# output. If the sorted expected and actual files compare the same,
# it is safe to assume the actual output match the expected file.
expect_sorted=expect_sorted
@@ -473,44 +496,44 @@ TOOLTEST() {
# is done by serial mode.
grep -v "EXIT CODE:" $expect_sorted > $expect_sorted.noexit
mv $expect_sorted.noexit $expect_sorted
- if $CMP $expect_sorted $actual_sorted; then
- echo " PASSED"
- else
- echo "*FAILED*"
- nerrors="`expr $nerrors + 1`"
- if test yes = "$verbose"; then
- echo "====Expected result ($expect_sorted) differs from actual result ($actual_sorted)"
- $DIFF $expect_sorted $actual_sorted |sed 's/^/ /'
- echo "====The actual output ($actual_sav)"
- sed 's/^/ /' < $actual_sav
- echo "====The actual stderr ($actual_err_sav)"
- sed 's/^/ /' < $actual_err_sav
- echo "====End of actual stderr ($actual_err_sav)"
- echo ""
- fi
- fi
+ if $CMP $expect_sorted $actual_sorted; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ if test yes = "$verbose"; then
+ echo "====Expected result ($expect_sorted) differs from actual result ($actual_sorted)"
+ $DIFF $expect_sorted $actual_sorted |sed 's/^/ /'
+ echo "====The actual output ($actual_sav)"
+ sed 's/^/ /' < $actual_sav
+ echo "====The actual stderr ($actual_err_sav)"
+ sed 's/^/ /' < $actual_err_sav
+ echo "====End of actual stderr ($actual_err_sav)"
+ echo ""
+ fi
+ fi
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actual $actual_err $actual_sav $actual_err_sav
- rm -f $actual_sorted $expect_sorted
+ rm -f $actual $actual_err $actual_sav $actual_err_sav
+ rm -f $actual_sorted $expect_sorted
fi
}
# Print a "SKIP" message
SKIP() {
- TESTING $H5DIFF $@
- echo " -SKIP-"
+ TESTING $H5DIFF $@
+ echo " -SKIP-"
}
##############################################################################
-# The tests
+# The tests
# To avoid the printing of the complete full path of the test file, that hides
-# all the other parameters for long paths, the printing of the command line
+# all the other parameters for long paths, the printing of the command line
# is done first in
# TESTING with the name only of the test file $TOOL, not its full path $TESTFILE
##############################################################################
@@ -525,13 +548,13 @@ COPY_TESTFILES_TO_TESTDIR
TOOLTEST h5diff_10.txt -h
# 1.1 normal mode
-TOOLTEST h5diff_11.txt h5diff_basic1.h5 h5diff_basic2.h5
+TOOLTEST h5diff_11.txt h5diff_basic1.h5 h5diff_basic2.h5
# 1.2 normal mode with objects
TOOLTEST h5diff_12.txt h5diff_basic1.h5 h5diff_basic2.h5 g1/dset1 g1/dset2
# 1.3 report mode
-TOOLTEST h5diff_13.txt -r h5diff_basic1.h5 h5diff_basic2.h5
+TOOLTEST h5diff_13.txt -r h5diff_basic1.h5 h5diff_basic2.h5
# 1.4 report mode with objects
TOOLTEST h5diff_14.txt -r h5diff_basic1.h5 h5diff_basic2.h5 g1/dset1 g1/dset2
@@ -549,7 +572,7 @@ TOOLTEST h5diff_16_2.txt --verbose --relative=0.02 h5diff_basic1.h5 h5diff_basic
TOOLTEST h5diff_16_3.txt -v -p 0.02 h5diff_basic1.h5 h5diff_basic1.h5 g1/dset9 g1/dset10
# 1.7 verbose mode
-TOOLTEST h5diff_17.txt -v h5diff_basic1.h5 h5diff_basic2.h5
+TOOLTEST h5diff_17.txt -v h5diff_basic1.h5 h5diff_basic2.h5
# 1.7 test 32-bit INFINITY
TOOLTEST h5diff_171.txt -v h5diff_basic1.h5 h5diff_basic1.h5 /g1/fp19 /g1/fp19_COPY
@@ -557,8 +580,8 @@ TOOLTEST h5diff_171.txt -v h5diff_basic1.h5 h5diff_basic1.h5 /g1/fp19 /g1/fp19_C
# 1.7 test 64-bit INFINITY
TOOLTEST h5diff_172.txt -v h5diff_basic1.h5 h5diff_basic1.h5 /g1/fp20 /g1/fp20_COPY
-# 1.8 quiet mode
-TOOLTEST h5diff_18.txt -q h5diff_basic1.h5 h5diff_basic2.h5
+# 1.8 quiet mode
+TOOLTEST h5diff_18.txt -q h5diff_basic1.h5 h5diff_basic2.h5
# 1.8 -v and -q
TOOLTEST h5diff_18_1.txt -v -q h5diff_basic1.h5 h5diff_basic2.h5
@@ -588,7 +611,7 @@ TOOLTEST h5diff_23.txt -v h5diff_types.h5 h5diff_types.h5 g1 g1
TOOLTEST h5diff_24.txt -v h5diff_types.h5 h5diff_types.h5 t1 t1
# 2.5
-TOOLTEST h5diff_25.txt -v h5diff_types.h5 h5diff_types.h5 l1 l1
+TOOLTEST h5diff_25.txt -v h5diff_types.h5 h5diff_types.h5 l1 l1
# 2.6
TOOLTEST h5diff_26.txt -v h5diff_types.h5 h5diff_types.h5 g1 g2
@@ -642,7 +665,7 @@ TOOLTEST h5diff_57.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset7a dset7b
# 5.8 (region reference)
TOOLTEST h5diff_58.txt -v h5diff_dset1.h5 h5diff_dset2.h5 refreg
-# test for both dset and attr with same type but with different size
+# test for both dset and attr with same type but with different size
# ( HDDFV-7942 )
TOOLTEST h5diff_59.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset11a dset11b
@@ -652,14 +675,14 @@ TOOLTEST h5diff_59.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset11a dset11b
# 6.0: Check if the command line number of arguments is less than 3
-TOOLTEST h5diff_600.txt h5diff_basic1.h5
+TOOLTEST h5diff_600.txt h5diff_basic1.h5
-# 6.1: Check if non-exist object name is specified
+# 6.1: Check if non-exist object name is specified
TOOLTEST h5diff_601.txt h5diff_basic1.h5 h5diff_basic1.h5 nono_obj
# ##############################################################################
-# # -d
+# # -d
# ##############################################################################
@@ -678,7 +701,7 @@ TOOLTEST h5diff_606.txt -d 0x1 h5diff_basic1.h5 h5diff_basic2.h5 g1/dset3 g1/dse
# 6.7: string
TOOLTEST h5diff_607.txt -d "1" h5diff_basic1.h5 h5diff_basic2.h5 g1/dset3 g1/dset4
-# 6.8: use system epsilon
+# 6.8: use system epsilon
TOOLTEST h5diff_608.txt --use-system-epsilon h5diff_basic1.h5 h5diff_basic2.h5 g1/dset3 g1/dset4
# 6.9: number larger than biggest difference
@@ -762,7 +785,7 @@ TOOLTEST h5diff_631.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h
# ##############################################################################
# 7. attributes
# ##############################################################################
-TOOLTEST h5diff_70.txt -v h5diff_attr1.h5 h5diff_attr2.h5
+TOOLTEST h5diff_70.txt -v h5diff_attr1.h5 h5diff_attr2.h5
# temporary test to verify HDF5-8625
TOOLTEST h5diff_tmp1.txt tmptest2.he5 tmptest.he5
# temporary test to verify HDF5-8639
@@ -772,10 +795,10 @@ TOOLTEST h5diff_tmp2.txt tmpSingleSiteBethe.output.h5 tmpSingleSiteBethe.referen
# attrs with verbose option level
# ##################################################
-TOOLTEST h5diff_700.txt -v1 h5diff_attr1.h5 h5diff_attr2.h5
-TOOLTEST h5diff_701.txt -v2 h5diff_attr1.h5 h5diff_attr2.h5
-TOOLTEST h5diff_702.txt --verbose=1 h5diff_attr1.h5 h5diff_attr2.h5
-TOOLTEST h5diff_703.txt --verbose=2 h5diff_attr1.h5 h5diff_attr2.h5
+TOOLTEST h5diff_700.txt -v1 h5diff_attr1.h5 h5diff_attr2.h5
+TOOLTEST h5diff_701.txt -v2 h5diff_attr1.h5 h5diff_attr2.h5
+TOOLTEST h5diff_702.txt --verbose=1 h5diff_attr1.h5 h5diff_attr2.h5
+TOOLTEST h5diff_703.txt --verbose=2 h5diff_attr1.h5 h5diff_attr2.h5
# same attr number , all same attr name
TOOLTEST h5diff_704.txt -v2 h5diff_attr_v_level1.h5 h5diff_attr_v_level2.h5 /g
@@ -789,7 +812,7 @@ TOOLTEST h5diff_706.txt -v2 h5diff_attr_v_level1.h5 h5diff_attr_v_level2.h5 /nty
# different attr number , same attr name (intersected)
TOOLTEST h5diff_707.txt -v2 h5diff_attr_v_level1.h5 h5diff_attr_v_level2.h5 /g2
-# different attr number , all different attr name
+# different attr number , all different attr name
TOOLTEST h5diff_708.txt -v2 h5diff_attr_v_level1.h5 h5diff_attr_v_level2.h5 /g3
# when no attributes exist in both objects
@@ -801,32 +824,32 @@ TOOLTEST h5diff_710.txt -v2 h5diff_attr_v_level1.h5 h5diff_attr_v_level2.h5
# ##############################################################################
# 8. all dataset datatypes
# ##############################################################################
-TOOLTEST h5diff_80.txt -v h5diff_dset1.h5 h5diff_dset2.h5
+TOOLTEST h5diff_80.txt -v h5diff_dset1.h5 h5diff_dset2.h5
# 9. compare a file with itself
TOOLTEST h5diff_90.txt -v h5diff_basic2.h5 h5diff_basic2.h5
# 10. read by hyperslab, print indexes
-TOOLTEST h5diff_100.txt -v h5diff_hyper1.h5 h5diff_hyper2.h5
+TOOLTEST h5diff_100.txt -v h5diff_hyper1.h5 h5diff_hyper2.h5
# 11. floating point comparison
# double value
-TOOLTEST h5diff_101.txt -v h5diff_basic1.h5 h5diff_basic1.h5 g1/d1 g1/d2
+TOOLTEST h5diff_101.txt -v h5diff_basic1.h5 h5diff_basic1.h5 g1/d1 g1/d2
# float value
-TOOLTEST h5diff_102.txt -v h5diff_basic1.h5 h5diff_basic1.h5 g1/fp1 g1/fp2
+TOOLTEST h5diff_102.txt -v h5diff_basic1.h5 h5diff_basic1.h5 g1/fp1 g1/fp2
-# with --use-system-epsilon for double value
-TOOLTEST h5diff_103.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h5 g1/d1 g1/d2
+# with --use-system-epsilon for double value
+TOOLTEST h5diff_103.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h5 g1/d1 g1/d2
# with --use-system-epsilon for float value
-TOOLTEST h5diff_104.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h5 g1/fp1 g1/fp2
+TOOLTEST h5diff_104.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h5 g1/fp1 g1/fp2
# not comparable -c flag
-TOOLTEST h5diff_200.txt h5diff_basic2.h5 h5diff_basic2.h5 g2/dset1 g2/dset2
+TOOLTEST h5diff_200.txt h5diff_basic2.h5 h5diff_basic2.h5 g2/dset1 g2/dset2
-TOOLTEST h5diff_201.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset1 g2/dset2
+TOOLTEST h5diff_201.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset1 g2/dset2
TOOLTEST h5diff_202.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset2 g2/dset3
@@ -842,9 +865,9 @@ TOOLTEST h5diff_206.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset7 g2/dset8
TOOLTEST h5diff_207.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset8 g2/dset9
# not comparable in dataspace of zero dimension size
-TOOLTEST h5diff_208.txt -c h5diff_dset_zero_dim_size1.h5 h5diff_dset_zero_dim_size2.h5
+TOOLTEST h5diff_208.txt -c h5diff_dset_zero_dim_size1.h5 h5diff_dset_zero_dim_size2.h5
-# non-comparable dataset with comparable attribute, and other comparable datasets.
+# non-comparable dataset with comparable attribute, and other comparable datasets.
# Also test non-compatible attributes with different type, dimention, rank.
# All the comparables should display differences.
TOOLTEST h5diff_220.txt -c non_comparables1.h5 non_comparables2.h5 /g1
@@ -862,7 +885,7 @@ TOOLTEST h5diff_222.txt -c non_comparables1.h5 non_comparables2.h5
TOOLTEST h5diff_223.txt -c non_comparables1.h5 non_comparables2.h5 /diffobjtypes
# swap files
TOOLTEST h5diff_224.txt -c non_comparables2.h5 non_comparables1.h5 /diffobjtypes
-
+
# ##############################################################################
# # Links compare without --follow-symlinks nor --no-dangling-links
# ##############################################################################
@@ -958,28 +981,28 @@ TOOLTEST h5diff_425.txt --follow-symlinks -v h5diff_ext2softlink_src.h5 h5diff_e
TOOLTEST h5diff_450.txt --follow-symlinks -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5
# dangling links --follow-symlinks and --no-dangling-links (FILE to FILE)
-TOOLTEST h5diff_451.txt --follow-symlinks -v --no-dangling-links h5diff_danglelinks1.h5 h5diff_danglelinks2.h5
+TOOLTEST h5diff_451.txt --follow-symlinks -v --no-dangling-links h5diff_danglelinks1.h5 h5diff_danglelinks2.h5
# try --no-dangling-links without --follow-symlinks options
TOOLTEST h5diff_452.txt --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5
# dangling link found for soft links (FILE to FILE)
-TOOLTEST h5diff_453.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5
+TOOLTEST h5diff_453.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5
# dangling link found for soft links (obj to obj)
-TOOLTEST h5diff_454.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 /softlink_dset2 /softlink_noexist
+TOOLTEST h5diff_454.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 /softlink_dset2 /softlink_noexist
# dangling link found for soft links (obj to obj) Both dangle links
-TOOLTEST h5diff_455.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 /softlink_noexist /softlink_noexist
+TOOLTEST h5diff_455.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 /softlink_noexist /softlink_noexist
# dangling link found for ext links (FILE to FILE)
-TOOLTEST h5diff_456.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5
+TOOLTEST h5diff_456.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5
# dangling link found for ext links (obj to obj). target file exist
-TOOLTEST h5diff_457.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 /ext_link_dset1 /ext_link_noexist1
+TOOLTEST h5diff_457.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 /ext_link_dset1 /ext_link_noexist1
# dangling link found for ext links (obj to obj). target file NOT exist
-TOOLTEST h5diff_458.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 /ext_link_dset1 /ext_link_noexist2
+TOOLTEST h5diff_458.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 /ext_link_dset1 /ext_link_noexist2
# dangling link found for ext links (obj to obj). Both dangle links
TOOLTEST h5diff_459.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 /ext_link_noexist1 /ext_link_noexist2
@@ -993,14 +1016,14 @@ TOOLTEST h5diff_466.txt -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_dangl
# soft link vs. soft dangling
TOOLTEST h5diff_467.txt -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /soft_link2
# ext dangling vs. ext dangling
-TOOLTEST h5diff_468.txt -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_link4
+TOOLTEST h5diff_468.txt -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_link4
# ext link vs. ext dangling
TOOLTEST h5diff_469.txt -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_link2
#----------------------------------------
-# dangling links without follow symlink
+# dangling links without follow symlink
# (HDFFV-7998)
-# test - soft dangle links (same and different paths),
+# test - soft dangle links (same and different paths),
# - external dangle links (same and different paths)
TOOLTEST h5diff_471.txt -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5
TOOLTEST h5diff_472.txt -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /soft_link1
@@ -1011,7 +1034,7 @@ TOOLTEST h5diff_475.txt -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_li
# ##############################################################################
# # test for group diff recursivly
# ##############################################################################
-# root
+# root
TOOLTEST h5diff_500.txt -v h5diff_grp_recurse1.h5 h5diff_grp_recurse2.h5 / /
TOOLTEST h5diff_501.txt -v --follow-symlinks h5diff_grp_recurse1.h5 h5diff_grp_recurse2.h5 / /
@@ -1045,7 +1068,7 @@ TOOLTEST h5diff_513.txt -v h5diff_grp_recurse1.h5 h5diff_grp_recurse2.h5 /slink_
TOOLTEST h5diff_514.txt -v --follow-symlinks h5diff_grp_recurse1.h5 h5diff_grp_recurse2.h5 /slink_grp10 /slink_grp11
###############################################################################
-# Test for group recursive diff via multi-linked external links
+# Test for group recursive diff via multi-linked external links
# With follow-symlinks, file h5diff_grp_recurse_ext1.h5 and h5diff_grp_recurse_ext2-1.h5 should
# be same with the external links.
###############################################################################
@@ -1068,7 +1091,7 @@ TOOLTEST h5diff_480.txt -v --exclude-path /group1/dset3 h5diff_exclude1-1.h5 h5d
TOOLTEST h5diff_481.txt -v h5diff_exclude1-1.h5 h5diff_exclude1-2.h5
#
-# Different structure, different names.
+# Different structure, different names.
#
# Exclude all the different objects. Expect return - same
TOOLTEST h5diff_482.txt -v --exclude-path "/group1" --exclude-path "/dset1" h5diff_exclude2-1.h5 h5diff_exclude2-2.h5
@@ -1099,9 +1122,9 @@ TOOLTEST h5diff_530.txt -v h5diff_comp_vl_strs.h5 h5diff_comp_vl_strs.h5 /group
TOOLTEST h5diff_540.txt -v compounds_array_vlen1.h5 compounds_array_vlen2.h5
# ##############################################################################
-# # Test mutually exclusive options
+# # Test mutually exclusive options
# ##############################################################################
-# Test with -d , -p and --use-system-epsilon.
+# Test with -d , -p and --use-system-epsilon.
TOOLTEST h5diff_640.txt -v -d 5 -p 0.05 --use-system-epsilon h5diff_basic1.h5 h5diff_basic2.h5 /g1/dset3 /g1/dset4
TOOLTEST h5diff_641.txt -v -d 5 -p 0.05 h5diff_basic1.h5 h5diff_basic2.h5 /g1/dset3 /g1/dset4
TOOLTEST h5diff_642.txt -v -p 0.05 -d 5 h5diff_basic1.h5 h5diff_basic2.h5 /g1/dset3 /g1/dset4
@@ -1110,6 +1133,13 @@ TOOLTEST h5diff_644.txt -v --use-system-epsilon -d 5 h5diff_basic1.h5 h5diff_bas
TOOLTEST h5diff_645.txt -v -p 0.05 --use-system-epsilon h5diff_basic1.h5 h5diff_basic2.h5 /g1/dset3 /g1/dset4
TOOLTEST h5diff_646.txt -v --use-system-epsilon -p 0.05 h5diff_basic1.h5 h5diff_basic2.h5 /g1/dset3 /g1/dset4
+# ##############################################################################
+# VDS tests
+# ##############################################################################
+TOOLTEST h5diff_v1.txt -v 1_vds.h5 2_vds.h5
+TOOLTEST h5diff_v2.txt -r 1_vds.h5 2_vds.h5
+TOOLTEST h5diff_v3.txt -c 1_vds.h5 2_vds.h5
+
# ##############################################################################
# # END
diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt
index 47ba7a8..be08e2a 100644
--- a/tools/h5dump/CMakeLists.txt
+++ b/tools/h5dump/CMakeLists.txt
@@ -39,6 +39,8 @@ if (BUILD_TESTING)
include (CMakeTestsPBITS.cmake)
+ include (CMakeTestsVDS.cmake)
+
include (CMakeTestsXML.cmake)
endif (BUILD_TESTING)
diff --git a/tools/h5dump/CMakeTestsVDS.cmake b/tools/h5dump/CMakeTestsVDS.cmake
new file mode 100644
index 0000000..58287fa
--- /dev/null
+++ b/tools/h5dump/CMakeTestsVDS.cmake
@@ -0,0 +1,238 @@
+
+##############################################################################
+##############################################################################
+### T E S T I N G ###
+##############################################################################
+##############################################################################
+
+ # --------------------------------------------------------------------
+ # VDS
+ # --------------------------------------------------------------------
+ #-- Copy all the HDF5 files from the test directory into the source directory
+ set (HDF5_REFERENCE_VDS
+ tvds-1.ddl
+ tvds-2.ddl
+ tvds-3_1.ddl
+ tvds-3_2.ddl
+ tvds-4.ddl
+ tvds-5.ddl
+ tvds_layout-1.ddl
+ tvds_layout-2.ddl
+ tvds_layout-3_1.ddl
+ tvds_layout-3_2.ddl
+ tvds_layout-4.ddl
+ tvds_layout-5.ddl
+ )
+ set (HDF5_REFERENCE_TEST_VDS
+ 1_a.h5
+ 1_b.h5
+ 1_c.h5
+ 1_d.h5
+ 1_e.h5
+ 1_f.h5
+ 1_vds.h5
+ 2_a.h5
+ 2_b.h5
+ 2_c.h5
+ 2_d.h5
+ 2_e.h5
+ 2_vds.h5
+ 3_1_vds.h5
+ 3_2_vds.h5
+ 4_0.h5
+ 4_1.h5
+ 4_2.h5
+ 4_vds.h5
+ 5_a.h5
+ 5_b.h5
+ 5_c.h5
+ 5_vds.h5
+ )
+ set (HDF5_ERROR_REFERENCE_VDS
+ )
+
+ foreach (vds_h5_file ${HDF5_REFERENCE_TEST_VDS})
+ GET_FILENAME_COMPONENT(fname "${vds_h5_file}" NAME)
+ set (dest "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}")
+ #message (STATUS " Copying ${vds_h5_file}")
+ add_custom_command (
+ TARGET h5dump
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND}
+ ARGS -E copy_if_different ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/${vds_h5_file} ${dest}
+ )
+ endforeach (vds_h5_file ${HDF5_REFERENCE_TEST_VDS})
+
+
+ foreach (ddl_vds ${HDF5_REFERENCE_VDS})
+ GET_FILENAME_COMPONENT(fname "${ddl_vds}" NAME)
+ set (ddldest "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}")
+ #message (STATUS " Copying ${ddl_vds}")
+ add_custom_command (
+ TARGET h5dump
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND}
+ ARGS -E copy_if_different ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/${ddl_vds} ${ddldest}
+ )
+ endforeach (ddl_vds ${HDF5_REFERENCE_VDS})
+
+ foreach (ddl_vds ${HDF5_ERROR_REFERENCE_VDS})
+ GET_FILENAME_COMPONENT(fname "${ddl_vds}" NAME)
+ set (ddldest "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}")
+ #message (STATUS " Copying ${ddl_vds}")
+ add_custom_command (
+ TARGET h5dump
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND}
+ ARGS -E copy_if_different ${PROJECT_SOURCE_DIR}/errfiles/${ddl_vds} ${ddldest}
+ )
+ endforeach (ddl_vds ${HDF5_ERROR_REFERENCE_VDS})
+
+##############################################################################
+##############################################################################
+### T H E T E S T S M A C R O S ###
+##############################################################################
+##############################################################################
+
+ MACRO (ADD_H5_VDS_TEST resultfile resultcode)
+ # If using memchecker add tests without using scripts
+ if (HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (NAME H5DUMP-${resultfile} COMMAND $<TARGET_FILE:h5dump> ${ARGN})
+ set_tests_properties (H5DUMP-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfilesvds")
+ if (NOT ${resultcode} STREQUAL "0")
+ set_tests_properties (H5DUMP-${resultfile} PROPERTIES WILL_FAIL "true")
+ endif (NOT ${resultcode} STREQUAL "0")
+ if (NOT "${last_vds_test}" STREQUAL "")
+ set_tests_properties (H5DUMP-${resultfile} PROPERTIES DEPENDS ${last_VDS_test})
+ endif (NOT "${last_vds_test}" STREQUAL "")
+ else (HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (
+ NAME H5DUMP-${resultfile}-clear-objects
+ COMMAND ${CMAKE_COMMAND}
+ -E remove ${resultfile}.out ${resultfile}.out.err
+ )
+ set_tests_properties (H5DUMP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds")
+ add_test (
+ NAME H5DUMP-${resultfile}
+ COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
+ -D "TEST_ARGS:STRING=${ARGN}"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles/vds"
+ -D "TEST_OUTPUT=${resultfile}.out"
+ -D "TEST_EXPECT=${resultcode}"
+ -D "TEST_REFERENCE=${resultfile}.ddl"
+ -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
+ )
+ set_tests_properties (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-${resultfile}-clear-objects")
+ endif (HDF5_ENABLE_USING_MEMCHECKER)
+ ENDMACRO (ADD_H5_VDS_TEST file)
+
+ MACRO (ADD_H5_VDS_LAYOUT resultfile resultcode)
+ # If using memchecker add tests without using scripts
+ if (HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (NAME H5DUMP-${resultfile} COMMAND $<TARGET_FILE:h5dump> -p ${ARGN})
+ set_tests_properties (H5DUMP-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfilesvds")
+ if (NOT ${resultcode} STREQUAL "0")
+ set_tests_properties (H5DUMP-${resultfile} PROPERTIES WILL_FAIL "true")
+ endif (NOT ${resultcode} STREQUAL "0")
+ if (NOT "${last_vds_test}" STREQUAL "")
+ set_tests_properties (H5DUMP-${resultfile} PROPERTIES DEPENDS ${last_VDS_test})
+ endif (NOT "${last_vds_test}" STREQUAL "")
+ else (HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (
+ NAME H5DUMP-${resultfile}-clear-objects
+ COMMAND ${CMAKE_COMMAND}
+ -E remove ${resultfile}.out ${resultfile}.out.err
+ )
+ set_tests_properties (H5DUMP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds")
+ add_test (
+ NAME H5DUMP-${resultfile}
+ COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
+ -D "TEST_ARGS:STRING=-p;${ARGN}"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles/vds"
+ -D "TEST_OUTPUT=${resultfile}.out"
+ -D "TEST_EXPECT=${resultcode}"
+ -D "TEST_REFERENCE=${resultfile}.ddl"
+ -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
+ )
+ set_tests_properties (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-${resultfile}-clear-objects")
+ endif (HDF5_ENABLE_USING_MEMCHECKER)
+ ENDMACRO (ADD_H5_VDS_LAYOUT file)
+
+##############################################################################
+##############################################################################
+### T H E T E S T S ###
+##############################################################################
+##############################################################################
+
+ if (HDF5_ENABLE_USING_MEMCHECKER)
+ # Remove any output file left over from previous test run
+ add_test (
+ NAME H5DUMP_VDS-clearall-objects
+ COMMAND ${CMAKE_COMMAND}
+ -E remove
+ tvds-1.out
+ tvds-1.out.err
+ tvds-2.out
+ tvds-2.out.err
+ tvds-3_1.out
+ tvds-3_1.out.err
+ tvds-3_2.out
+ tvds-3_2.out.err
+ tvds-4.out
+ tvds-4.out.err
+ tvds-5.out
+ tvds-5.out.err
+ tvds_layout-1.out
+ tvds_layout-1.out.err
+ tvds_layout-2.out
+ tvds_layout-2.out.err
+ tvds_layout-3_1.out
+ tvds_layout-3_1.out.err
+ tvds_layout-3_2.out
+ tvds_layout-3_2.out.err
+ tvds_layout-4.out
+ tvds_layout-4.out.err
+ tvds_layout-5.out
+ tvds_layout-5.out.err
+ )
+ set_tests_properties (H5DUMP_VDS-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds")
+ if (NOT "${last_vds_test}" STREQUAL "")
+ set_tests_properties (H5DUMP_VDS-clearall-objects PROPERTIES DEPENDS ${last_vds_test})
+ endif (NOT "${last_vds_test}" STREQUAL "")
+ set (last_VDS_test "H5DUMP_VDS-clearall-objects")
+ endif (HDF5_ENABLE_USING_MEMCHECKER)
+
+# See which filters are usable (and skip tests for filters we
+# don't have). Do this by searching H5pubconf.h to see which
+# filters are defined.
+
+# detect whether the encoder is present.
+ if (H5_HAVE_FILTER_DEFLATE)
+ set (USE_FILTER_DEFLATE "true")
+ endif (H5_HAVE_FILTER_DEFLATE)
+
+ if (H5_HAVE_FILTER_SZIP)
+ set (USE_FILTER_SZIP "true")
+ endif (H5_HAVE_FILTER_SZIP)
+
+ # Data read
+ if (USE_FILTER_DEFLATE)
+ ADD_H5_VDS_TEST (tvds-1 0 --enable-error-stack 1_vds.h5)
+ ADD_H5_VDS_TEST (tvds-2 0 --enable-error-stack 2_vds.h5)
+ ADD_H5_VDS_TEST (tvds-3_1 0 --enable-error-stack 3_1_vds.h5)
+ ADD_H5_VDS_TEST (tvds-3_2 0 --enable-error-stack 3_2_vds.h5)
+ ADD_H5_VDS_TEST (tvds-4 0 --enable-error-stack 4_vds.h5)
+ ADD_H5_VDS_TEST (tvds-5 0 --enable-error-stack 5_vds.h5)
+ endif (USE_FILTER_DEFLATE)
+
+ # Layout read
+ if (USE_FILTER_DEFLATE)
+ ADD_H5_VDS_LAYOUT (tvds_layout-1 0 --enable-error-stack 1_vds.h5)
+ ADD_H5_VDS_LAYOUT (tvds_layout-2 0 --enable-error-stack 2_vds.h5)
+ ADD_H5_VDS_LAYOUT (tvds_layout-3_1 0 --enable-error-stack 3_1_vds.h5)
+ ADD_H5_VDS_LAYOUT (tvds_layout-3_2 0 --enable-error-stack 3_2_vds.h5)
+ ADD_H5_VDS_LAYOUT (tvds_layout-4 0 --enable-error-stack 4_vds.h5)
+ ADD_H5_VDS_LAYOUT (tvds_layout-5 0 --enable-error-stack 5_vds.h5)
+ endif (USE_FILTER_DEFLATE)
diff --git a/tools/h5dump/Makefile.am b/tools/h5dump/Makefile.am
index cee4801..93ba195 100644
--- a/tools/h5dump/Makefile.am
+++ b/tools/h5dump/Makefile.am
@@ -25,7 +25,7 @@ AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
# Test programs and scripts
TEST_PROG=h5dumpgentest
-TEST_SCRIPT=testh5dump.sh testh5dumppbits.sh testh5dumpxml.sh
+TEST_SCRIPT=testh5dump.sh testh5dumppbits.sh testh5dumpvds.sh testh5dumpxml.sh
check_PROGRAMS=$(TEST_PROG) binread
check_SCRIPTS=$(TEST_SCRIPT)
diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in
index cfb268c..9ac80d7 100644
--- a/tools/h5dump/Makefile.in
+++ b/tools/h5dump/Makefile.in
@@ -99,8 +99,8 @@ DIST_COMMON = $(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am $(srcdir)/Makefile.in \
$(srcdir)/Makefile.am $(top_srcdir)/bin/mkinstalldirs \
$(srcdir)/testh5dump.sh.in $(srcdir)/testh5dumppbits.sh.in \
- $(srcdir)/testh5dumpxml.sh.in $(top_srcdir)/bin/depcomp \
- $(top_srcdir)/bin/test-driver
+ $(srcdir)/testh5dumpvds.sh.in $(srcdir)/testh5dumpxml.sh.in \
+ $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/test-driver
check_PROGRAMS = $(am__EXEEXT_1) binread$(EXEEXT)
bin_PROGRAMS = h5dump$(EXEEXT)
TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT)
@@ -113,7 +113,8 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/src/H5config.h \
$(top_builddir)/fortran/src/H5config_f.inc
-CONFIG_CLEAN_FILES = testh5dump.sh testh5dumppbits.sh testh5dumpxml.sh
+CONFIG_CLEAN_FILES = testh5dump.sh testh5dumppbits.sh testh5dumpvds.sh \
+ testh5dumpxml.sh
CONFIG_CLEAN_VPATH_FILES =
am__installdirs = "$(DESTDIR)$(bindir)"
am__EXEEXT_1 = h5dumpgentest$(EXEEXT)
@@ -692,7 +693,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 *.h5 *.bin
# Test programs and scripts
TEST_PROG = h5dumpgentest
-TEST_SCRIPT = testh5dump.sh testh5dumppbits.sh testh5dumpxml.sh
+TEST_SCRIPT = testh5dump.sh testh5dumppbits.sh testh5dumpvds.sh testh5dumpxml.sh
check_SCRIPTS = $(TEST_SCRIPT)
SCRIPT_DEPEND = h5dump$(EXEEXT)
@@ -764,6 +765,8 @@ testh5dump.sh: $(top_builddir)/config.status $(srcdir)/testh5dump.sh.in
cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
testh5dumppbits.sh: $(top_builddir)/config.status $(srcdir)/testh5dumppbits.sh.in
cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+testh5dumpvds.sh: $(top_builddir)/config.status $(srcdir)/testh5dumpvds.sh.in
+ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
testh5dumpxml.sh: $(top_builddir)/config.status $(srcdir)/testh5dumpxml.sh.in
cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
install-binPROGRAMS: $(bin_PROGRAMS)
diff --git a/tools/h5dump/errfiles/tdset-2.err b/tools/h5dump/errfiles/tdset-2.err
index d9b92f3..775351e 100644
--- a/tools/h5dump/errfiles/tdset-2.err
+++ b/tools/h5dump/errfiles/tdset-2.err
@@ -1,17 +1,20 @@
HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
- #000: (file name) line (number) in H5Dopen2(): not found
+ #000: (file name) line (number) in H5Dopen2(): unable to open dataset
+ major: Dataset
+ minor: Can't open object
+ #001: (file name) line (number) in H5D__open_name(): not found
major: Dataset
minor: Object not found
- #001: (file name) line (number) in H5G_loc_find(): can't find object
+ #002: (file name) line (number) in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
- #002: (file name) line (number) in H5G_traverse(): internal path traversal failed
+ #003: (file name) line (number) in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
- #003: (file name) line (number) in H5G_traverse_real(): traversal operator failed
+ #004: (file name) line (number) in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
- #004: (file name) line (number) in H5G_loc_find_cb(): object 'dset3' doesn't exist
+ #005: (file name) line (number) in H5G_loc_find_cb(): object 'dset3' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
diff --git a/tools/h5dump/errfiles/tperror.err b/tools/h5dump/errfiles/tperror.err
index 19a7a73..29f9e7f 100644
--- a/tools/h5dump/errfiles/tperror.err
+++ b/tools/h5dump/errfiles/tperror.err
@@ -1,17 +1,20 @@
HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
- #000: (file name) line (number) in H5Dopen2(): not found
+ #000: (file name) line (number) in H5Dopen2(): unable to open dataset
+ major: Dataset
+ minor: Can't open object
+ #001: (file name) line (number) in H5D__open_name(): not found
major: Dataset
minor: Object not found
- #001: (file name) line (number) in H5G_loc_find(): can't find object
+ #002: (file name) line (number) in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
- #002: (file name) line (number) in H5G_traverse(): internal path traversal failed
+ #003: (file name) line (number) in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
- #003: (file name) line (number) in H5G_traverse_real(): traversal operator failed
+ #004: (file name) line (number) in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
- #004: (file name) line (number) in H5G_loc_find_cb(): object 'bogus' doesn't exist
+ #005: (file name) line (number) in H5G_loc_find_cb(): object 'bogus' doesn't exist
major: Symbol table
minor: Object not found
HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
diff --git a/tools/h5dump/errfiles/tslink-D.err b/tools/h5dump/errfiles/tslink-D.err
index b98e324..924e9cf 100644
--- a/tools/h5dump/errfiles/tslink-D.err
+++ b/tools/h5dump/errfiles/tslink-D.err
@@ -1,25 +1,28 @@
HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
- #000: (file name) line (number) in H5Dopen2(): not found
+ #000: (file name) line (number) in H5Dopen2(): unable to open dataset
+ major: Dataset
+ minor: Can't open object
+ #001: (file name) line (number) in H5D__open_name(): not found
major: Dataset
minor: Object not found
- #001: (file name) line (number) in H5G_loc_find(): can't find object
+ #002: (file name) line (number) in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
- #002: (file name) line (number) in H5G_traverse(): internal path traversal failed
+ #003: (file name) line (number) in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
- #003: (file name) line (number) in H5G_traverse_real(): special link traversal failed
+ #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed
major: Links
minor: Link traversal failure
- #004: (file name) line (number) in H5G__traverse_special(): symbolic link traversal failed
+ #005: (file name) line (number) in H5G__traverse_special(): symbolic link traversal failed
major: Links
minor: Link traversal failure
- #005: (file name) line (number) in H5G_traverse_slink(): unable to follow symbolic link
+ #006: (file name) line (number) in H5G_traverse_slink(): unable to follow symbolic link
major: Symbol table
minor: Object not found
- #006: (file name) line (number) in H5G_traverse_real(): traversal operator failed
+ #007: (file name) line (number) in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
- #007: (file name) line (number) in H5G_traverse_slink_cb(): component not found
+ #008: (file name) line (number) in H5G_traverse_slink_cb(): component not found
major: Symbol table
minor: Object not found
diff --git a/tools/h5dump/testh5dumpvds.sh.in b/tools/h5dump/testh5dumpvds.sh.in
new file mode 100644
index 0000000..b15606f
--- /dev/null
+++ b/tools/h5dump/testh5dumpvds.sh.in
@@ -0,0 +1,505 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+# Tests for the h5dump tool with vds type files
+
+srcdir=@srcdir@
+
+# Determine which filters are available
+USE_FILTER_SZIP="@USE_FILTER_SZIP@"
+USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
+
+TESTNAME=h5dump
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+DUMPER=h5dump # The tool name
+DUMPER_BIN=`pwd`/$DUMPER # The path of the tool binary
+
+H5DIFF=../h5diff/h5diff # The h5diff tool name
+H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
+
+H5IMPORT=../h5import/h5import # The h5import tool name
+H5IMPORT_BIN=`pwd`/$H5IMPORT # The path of the h5import tool binary
+
+RM='rm -rf'
+CMP='cmp -s'
+DIFF='diff -c'
+CP='cp'
+DIRNAME='dirname'
+LS='ls'
+AWK='awk'
+
+nerrors=0
+verbose=yes
+
+# source dirs
+SRC_TOOLS="$srcdir/../"
+
+SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
+# testfiles source dirs for tools
+SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
+SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
+SRC_H5DUMP_ERRORFILES="$srcdir/errfiles"
+SRC_H5DIFF_TESTFILES="$SRC_TOOLS/h5diff/testfiles"
+SRC_H5COPY_TESTFILES="$SRC_TOOLS/h5copy/testfiles"
+SRC_H5REPACK_TESTFILES="$SRC_TOOLS/h5repack/testfiles"
+SRC_H5JAM_TESTFILES="$SRC_TOOLS/h5jam/testfiles"
+SRC_H5STAT_TESTFILES="$SRC_TOOLS/h5stat/testfiles"
+SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/h5import/testfiles"
+
+TEST_P_DIR=./testfiles
+TESTDIR=./testfiles/vds
+test -d $TEST_P_DIR || mkdir -p $TEST_P_DIR
+test -d $TESTDIR || mkdir -p $TESTDIR
+
+######################################################################
+# test files
+# --------------------------------------------------------------------
+# All the test files copy from source directory to test directory
+# NOTE: Keep this framework to add/remove test files.
+# Any test files from other tools can be used in this framework.
+# This list are also used for checking exist.
+# Comment '#' without space can be used.
+# --------------------------------------------------------------------
+LIST_HDF5_TEST_FILES="
+$SRC_H5DUMP_TESTFILES/vds/1_a.h5
+$SRC_H5DUMP_TESTFILES/vds/1_b.h5
+$SRC_H5DUMP_TESTFILES/vds/1_c.h5
+$SRC_H5DUMP_TESTFILES/vds/1_d.h5
+$SRC_H5DUMP_TESTFILES/vds/1_e.h5
+$SRC_H5DUMP_TESTFILES/vds/1_f.h5
+$SRC_H5DUMP_TESTFILES/vds/1_vds.h5
+$SRC_H5DUMP_TESTFILES/vds/2_a.h5
+$SRC_H5DUMP_TESTFILES/vds/2_b.h5
+$SRC_H5DUMP_TESTFILES/vds/2_c.h5
+$SRC_H5DUMP_TESTFILES/vds/2_d.h5
+$SRC_H5DUMP_TESTFILES/vds/2_e.h5
+$SRC_H5DUMP_TESTFILES/vds/2_vds.h5
+$SRC_H5DUMP_TESTFILES/vds/3_1_vds.h5
+$SRC_H5DUMP_TESTFILES/vds/3_2_vds.h5
+$SRC_H5DUMP_TESTFILES/vds/4_0.h5
+$SRC_H5DUMP_TESTFILES/vds/4_1.h5
+$SRC_H5DUMP_TESTFILES/vds/4_2.h5
+$SRC_H5DUMP_TESTFILES/vds/4_vds.h5
+$SRC_H5DUMP_TESTFILES/vds/5_a.h5
+$SRC_H5DUMP_TESTFILES/vds/5_b.h5
+$SRC_H5DUMP_TESTFILES/vds/5_c.h5
+$SRC_H5DUMP_TESTFILES/vds/5_vds.h5
+"
+
+LIST_OTHER_TEST_FILES="
+$SRC_H5DUMP_TESTFILES/vds/tvds-1.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds-2.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds-3_1.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds-3_2.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds-4.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds-5.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds_layout-1.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds_layout-2.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds_layout-3_1.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds_layout-3_2.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds_layout-4.ddl
+$SRC_H5DUMP_TESTFILES/vds/tvds_layout-5.ddl
+"
+
+LIST_ERROR_TEST_FILES="
+"
+
+#
+# copy test files and expected output files from source dirs to test dir
+#
+COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES $LIST_ERROR_TEST_FILES"
+
+COPY_TESTFILES_TO_TESTDIR()
+{
+ # copy test files. Used -f to make sure get a new copy
+ for tstfile in $COPY_TESTFILES
+ do
+ # ignore '#' comment
+ echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
+ RET=$?
+ if [ $RET -eq 1 ]; then
+ # skip cp if srcdir is same as destdir
+ # this occurs when build/test performed in source dir and
+ # make cp fail
+ SDIR=`$DIRNAME $tstfile`
+ INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+ INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
+ if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+ $CP -f $tstfile $TESTDIR
+ if [ $? -ne 0 ]; then
+ echo "Error: FAILED to copy $tstfile ."
+
+ # Comment out this to CREATE expected file
+ exit $EXIT_FAILURE
+ fi
+ fi
+ fi
+ done
+}
+
+CLEAN_TESTFILES_AND_TESTDIR()
+{
+ # skip rm if srcdir is same as destdir
+ # this occurs when build/test performed in source dir and
+ # make cp fail
+ SDIR=`$DIRNAME $tstfile`
+ INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+ INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
+ if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+ $RM $TESTDIR
+ fi
+}
+
+# Print a line-line message left justified in a field of 70 characters
+# beginning with the word "Testing".
+#
+TESTING() {
+ SPACES=" "
+ echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
+}
+
+# Source in the output filter function definitions.
+. $srcdir/../../bin/output_filter.sh
+
+# Run a test and print PASS or *FAIL*. If a test fails then increment
+# the `nerrors' global variable and (if $verbose is set) display the
+# difference between the actual output and the expected output. The
+# expected output is given as the first argument to this function and
+# the actual output file is calculated by replacing the `.ddl' with
+# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a
+# non-zero value.
+#
+TOOLTEST() {
+ expect="$TESTDIR/$1"
+ actual="$TESTDIR/`basename $1 .ddl`.out"
+ actual_err="$TESTDIR/`basename $1 .ddl`.err"
+ actual_sav=${actual}-sav
+ actual_err_sav=${actual_err}-sav
+ shift
+
+ # Run test.
+ TESTING $DUMPER $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $DUMPER_BIN "$@"
+ ) >$actual 2>$actual_err
+
+ # save actual and actual_err in case they are needed later.
+ cp $actual $actual_sav
+ STDOUT_FILTER $actual
+ cp $actual_err $actual_err_sav
+ STDERR_FILTER $actual_err
+ cat $actual_err >> $actual
+
+ if [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ddl) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
+ fi
+
+}
+
+
+# same as TOOLTEST1 but compares generated file to expected output
+# and compares the generated data file to the expected data file
+# used for the binary tests that expect a full path in -o without -b
+TOOLTEST2() {
+
+ expectdata="$TESTDIR/$1"
+ expect="$TESTDIR/`basename $1 .exp`.ddl"
+ actualdata="$TESTDIR/`basename $1 .exp`.txt"
+ actual="$TESTDIR/`basename $1 .exp`.out"
+ actual_err="$TESTDIR/`basename $1 .exp`.err"
+ shift
+
+ # Run test.
+ TESTING $DUMPER $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $DUMPER_BIN "$@"
+ ) >$actual 2>$actual_err
+ cat $actual_err >> $actual
+
+ if [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual; then
+ if [ ! -f $expectdata ]; then
+ # Create the expect data file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actualdata $expectdata
+ elif $CMP $expectdata $actualdata; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected datafile (*.exp) differs from actual datafile (*.txt)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/ /'
+ fi
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ddl) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actualdata $actual_err
+ fi
+
+}
+
+# same as TOOLTEST but filters error stack outp
+# Extract file name, line number, version and thread IDs because they may be different
+TOOLTEST3() {
+
+ expect="$TESTDIR/$1"
+ actual="$TESTDIR/`basename $1 .ddl`.out"
+ actual_err="$TESTDIR/`basename $1 .ddl`.err"
+ actual_ext="$TESTDIR/`basename $1 .ddl`.ext"
+ actual_sav=${actual}-sav
+ actual_err_sav=${actual_err}-sav
+ shift
+
+ # Run test.
+ TESTING $DUMPER $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $DUMPER_BIN "$@"
+ ) >$actual 2>$actual_err
+
+ # save actual and actual_err in case they are needed later.
+ cp $actual $actual_sav
+ STDOUT_FILTER $actual
+ cp $actual_err $actual_err_sav
+ STDERR_FILTER $actual_err
+
+ # Extract file name, line number, version and thread IDs because they may be different
+ sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
+ -e 's/line [0-9]*/line (number)/' \
+ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \
+ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
+ -e 's/H5Eget_auto[1-2]*/H5Eget_auto(1 or 2)/' \
+ -e 's/H5Eset_auto[1-2]*/H5Eset_auto(1 or 2)/' \
+ $actual_err > $actual_ext
+ cat $actual_ext >> $actual
+
+ if [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ddl) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actual_err $actual_sav $actual_err_sav
+ fi
+
+}
+
+# same as TOOLTEST3 but filters error stack output and compares to an error file
+# Extract file name, line number, version and thread IDs because they may be different
+TOOLTEST4() {
+
+ expect="$TESTDIR/$1"
+ expect_err="$TESTDIR/`basename $1 .ddl`.err"
+ actual="$TESTDIR/`basename $1 .ddl`.out"
+ actual_err="$TESTDIR/`basename $1 .ddl`.oerr"
+ actual_ext="$TESTDIR/`basename $1 .ddl`.ext"
+ actual_sav=${actual}-sav
+ actual_err_sav=${actual_err}-sav
+ shift
+
+ # Run test.
+ TESTING $DUMPER $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $DUMPER_BIN "$@"
+ ) >$actual 2>$actual_err
+
+ # save actual and actual_err in case they are needed later.
+ cp $actual $actual_sav
+ STDOUT_FILTER $actual
+ cp $actual_err $actual_err_sav
+ STDERR_FILTER $actual_err
+
+ # Extract file name, line number, version and thread IDs because they may be different
+ sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
+ -e 's/line [0-9]*/line (number)/' \
+ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \
+ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
+ -e 's/H5Eget_auto[1-2]*/H5Eget_auto(1 or 2)/' \
+ -e 's/H5Eset_auto[1-2]*/H5Eset_auto(1 or 2)/' \
+ $actual_err > $actual_ext
+ #cat $actual_ext >> $actual
+
+ if [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual; then
+ if $CMP $expect_err $actual_ext; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.err) differs from actual result (*.oerr)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect_err $actual_ext |sed 's/^/ /'
+ fi
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ddl) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actual_err $actual_sav $actual_err_sav
+ fi
+
+}
+
+# Print a "SKIP" message
+SKIP() {
+ TESTING $DUMPER $@
+ echo " -SKIP-"
+}
+
+# Print a line-line message left justified in a field of 70 characters
+#
+PRINT_H5DIFF() {
+ SPACES=" "
+ echo " Running h5diff $* $SPACES" | cut -c1-70 | tr -d '\012'
+}
+
+
+# Call the h5diff tool
+#
+DIFFTEST()
+{
+ PRINT_H5DIFF $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5DIFF_BIN "$@" -q
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+
+}
+
+# Print a line-line message left justified in a field of 70 characters
+# beginning with the word "Verifying".
+#
+PRINT_H5IMPORT() {
+ SPACES=" "
+ echo " Running h5import $* $SPACES" | cut -c1-70 | tr -d '\012'
+}
+
+# Call the h5import tool
+#
+IMPORTTEST()
+{
+ # remove the output hdf5 file if it exists
+ hdf5_file="$TESTDIR/$5"
+ if [ -f $hdf5_file ]; then
+ rm -f $hdf5_file
+ fi
+
+ PRINT_H5IMPORT $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5IMPORT_BIN "$@"
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+
+}
+
+
+##############################################################################
+##############################################################################
+### T H E T E S T S ###
+##############################################################################
+##############################################################################
+# prepare for test
+COPY_TESTFILES_TO_TESTDIR
+
+####### test for dataset vds ######
+
+ # Data read
+if test $USE_FILTER_DEFLATE = "yes" ; then
+ TOOLTEST tvds-1.ddl --enable-error-stack 1_vds.h5
+ TOOLTEST tvds-2.ddl --enable-error-stack 2_vds.h5
+ TOOLTEST tvds-3_1.ddl --enable-error-stack 3_1_vds.h5
+ TOOLTEST tvds-3_2.ddl --enable-error-stack 3_2_vds.h5
+ TOOLTEST tvds-4.ddl --enable-error-stack 4_vds.h5
+ TOOLTEST tvds-5.ddl --enable-error-stack 5_vds.h5
+fi
+
+ # Layout read
+if test $USE_FILTER_DEFLATE = "yes" ; then
+ TOOLTEST tvds_layout-1.ddl -p --enable-error-stack 1_vds.h5
+ TOOLTEST tvds_layout-2.ddl -p --enable-error-stack 2_vds.h5
+ TOOLTEST tvds_layout-3_1.ddl -p --enable-error-stack 3_1_vds.h5
+ TOOLTEST tvds_layout-3_2.ddl -p --enable-error-stack 3_2_vds.h5
+ TOOLTEST tvds_layout-4.ddl -p --enable-error-stack 4_vds.h5
+ TOOLTEST tvds_layout-5.ddl -p --enable-error-stack 5_vds.h5
+fi
+
+# Clean up temporary files/directories
+CLEAN_TESTFILES_AND_TESTDIR
+
+# Report test results and exit
+if test $nerrors -eq 0 ; then
+ echo "All $TESTNAME tests passed."
+ exit $EXIT_SUCCESS
+else
+ echo "$TESTNAME tests failed with $nerrors errors."
+ exit $EXIT_FAILURE
+fi
diff --git a/tools/h5ls/CMakeLists.txt b/tools/h5ls/CMakeLists.txt
index 4e96db2..6e7f00c 100644
--- a/tools/h5ls/CMakeLists.txt
+++ b/tools/h5ls/CMakeLists.txt
@@ -23,6 +23,8 @@ if (BUILD_TESTING)
include (CMakeTests.cmake)
+ include (CMakeTestsVDS.cmake)
+
endif (BUILD_TESTING)
##############################################################################
diff --git a/tools/h5ls/CMakeTestsVDS.cmake b/tools/h5ls/CMakeTestsVDS.cmake
new file mode 100644
index 0000000..1ef3f20
--- /dev/null
+++ b/tools/h5ls/CMakeTestsVDS.cmake
@@ -0,0 +1,149 @@
+
+##############################################################################
+##############################################################################
+### T E S T I N G ###
+##############################################################################
+##############################################################################
+
+ # --------------------------------------------------------------------
+ # Copy all the test files from source directory to test directory
+ # --------------------------------------------------------------------
+ set (LIST_HDF5_TEST_FILES
+ 1_a.h5
+ 1_b.h5
+ 1_c.h5
+ 1_d.h5
+ 1_e.h5
+ 1_f.h5
+ 1_vds.h5
+ 2_a.h5
+ 2_b.h5
+ 2_c.h5
+ 2_d.h5
+ 2_e.h5
+ 2_vds.h5
+ 3_1_vds.h5
+ 3_2_vds.h5
+ 4_0.h5
+ 4_1.h5
+ 4_2.h5
+ 4_vds.h5
+ 5_a.h5
+ 5_b.h5
+ 5_c.h5
+ 5_vds.h5
+ )
+
+ set (LIST_OTHER_TEST_FILES
+ tvds-1.ls
+ tvds-2.ls
+ tvds-3_1.ls
+ tvds-3_2.ls
+ tvds-4.ls
+ tvds-5.ls
+ )
+
+ file (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
+
+ # copy the list of test files
+ foreach (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
+ GET_FILENAME_COMPONENT(fname "${listfiles}" NAME)
+ set (dest "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}")
+ #message (STATUS " Copying ${listfiles} to ${dest}")
+ add_custom_command (
+ TARGET h5ls
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND}
+ ARGS -E copy_if_different ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/${listfiles} ${dest}
+ )
+ endforeach (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
+
+
+##############################################################################
+##############################################################################
+### T H E T E S T S M A C R O S ###
+##############################################################################
+##############################################################################
+
+ MACRO (ADD_H5_VDS_TEST resultfile resultcode)
+ # If using memchecker add tests without using scripts
+ if (HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (NAME H5LS-${resultfile} COMMAND $<TARGET_FILE:h5ls> ${ARGN})
+ set_tests_properties (H5LS-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds")
+ if (${resultcode} STREQUAL "1")
+ set_tests_properties (H5LS-${resultfile} PROPERTIES WILL_FAIL "true")
+ endif (${resultcode} STREQUAL "1")
+ if (NOT "${last_test}" STREQUAL "")
+ set_tests_properties (H5LS-${resultfile} PROPERTIES DEPENDS ${last_test})
+ endif (NOT "${last_test}" STREQUAL "")
+ else (HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (
+ NAME H5LS-${resultfile}-clear-objects
+ COMMAND ${CMAKE_COMMAND}
+ -E remove ./testfiles/${resultfile}.out ./testfiles/vds/${resultfile}.out.err
+ )
+ add_test (
+ NAME H5LS-${resultfile}
+ COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>"
+ -D "TEST_ARGS=${ARGN}"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles/vds"
+ -D "TEST_OUTPUT=${resultfile}.out"
+ -D "TEST_EXPECT=${resultcode}"
+ -D "TEST_REFERENCE=${resultfile}.ls"
+ -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
+ )
+ set_tests_properties (H5LS-${resultfile} PROPERTIES DEPENDS "H5LS_VDS-${resultfile}-clear-objects")
+ endif (HDF5_ENABLE_USING_MEMCHECKER)
+ ENDMACRO (ADD_H5_VDS_TEST file)
+
+##############################################################################
+##############################################################################
+### T H E T E S T S ###
+##############################################################################
+##############################################################################
+
+ if (HDF5_ENABLE_USING_MEMCHECKER)
+ # Remove any output file left over from previous test run
+ add_test (
+ NAME H5LS_VDS-clearall-objects
+ COMMAND ${CMAKE_COMMAND}
+ -E remove
+ tvds-1.out
+ tvds-1.out.err
+ tvds-2.out
+ tvds-2.out.err
+ tvds-3_1.out
+ tvds-3_1.out.err
+ tvds-3_2.out
+ tvds-3_2.out.err
+ tvds-4.out
+ tvds-4.out.err
+ tvds-5.out
+ tvds-5.out.err
+ tvds_layout-1.out
+ tvds_layout-1.out.err
+ tvds_layout-2.out
+ tvds_layout-2.out.err
+ tvds_layout-3_1.out
+ tvds_layout-3_1.out.err
+ tvds_layout-3_2.out
+ tvds_layout-3_2.out.err
+ tvds_layout-4.out
+ tvds_layout-4.out.err
+ tvds_layout-5.out
+ tvds_layout-5.out.err
+ )
+ if (NOT "${last_test}" STREQUAL "")
+ set_tests_properties (H5LS_VDS-clearall-objects PROPERTIES DEPENDS ${last_test})
+ endif (NOT "${last_test}" STREQUAL "")
+ set (last_test "H5LS_VDS-clearall-objects")
+ endif (HDF5_ENABLE_USING_MEMCHECKER)
+
+ ADD_H5_VDS_TEST (tvds-1 0 -w80 -v -S 1_vds.h5)
+ ADD_H5_VDS_TEST (tvds-2 0 -w80 -v -S 2_vds.h5)
+ ADD_H5_VDS_TEST (tvds-3_1 0 -w80 -v -S 3_1_vds.h5)
+ ADD_H5_VDS_TEST (tvds-3_2 0 -w80 -v -S 3_2_vds.h5)
+ ADD_H5_VDS_TEST (tvds-4 0 -w80 -v -S 4_vds.h5)
+ ADD_H5_VDS_TEST (tvds-5 0 -w80 -v -S 5_vds.h5)
+
diff --git a/tools/h5ls/Makefile.am b/tools/h5ls/Makefile.am
index 408ce93..54a06f1 100644
--- a/tools/h5ls/Makefile.am
+++ b/tools/h5ls/Makefile.am
@@ -24,7 +24,7 @@ include $(top_srcdir)/config/commence.am
AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
# Test programs and scripts
-TEST_SCRIPT=testh5ls.sh
+TEST_SCRIPT=testh5ls.sh testh5lsvds.sh
check_SCRIPTS=$(TEST_SCRIPT)
SCRIPT_DEPEND=h5ls$(EXEEXT)
diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in
index b23d07f..1229bae 100644
--- a/tools/h5ls/Makefile.in
+++ b/tools/h5ls/Makefile.in
@@ -98,8 +98,8 @@ host_triplet = @host@
DIST_COMMON = $(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am $(srcdir)/Makefile.in \
$(srcdir)/Makefile.am $(top_srcdir)/bin/mkinstalldirs \
- $(srcdir)/testh5ls.sh.in $(top_srcdir)/bin/depcomp \
- $(top_srcdir)/bin/test-driver
+ $(srcdir)/testh5ls.sh.in $(srcdir)/testh5lsvds.sh.in \
+ $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/test-driver
bin_PROGRAMS = h5ls$(EXEEXT)
TESTS = $(TEST_SCRIPT)
subdir = tools/h5ls
@@ -111,7 +111,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/src/H5config.h \
$(top_builddir)/fortran/src/H5config_f.inc
-CONFIG_CLEAN_FILES = testh5ls.sh
+CONFIG_CLEAN_FILES = testh5ls.sh testh5lsvds.sh
CONFIG_CLEAN_VPATH_FILES =
am__installdirs = "$(DESTDIR)$(bindir)"
PROGRAMS = $(bin_PROGRAMS)
@@ -674,7 +674,7 @@ TRACE = perl $(top_srcdir)/bin/trace
CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2
# Test programs and scripts
-TEST_SCRIPT = testh5ls.sh
+TEST_SCRIPT = testh5ls.sh testh5lsvds.sh
check_SCRIPTS = $(TEST_SCRIPT)
SCRIPT_DEPEND = h5ls$(EXEEXT)
@@ -740,6 +740,8 @@ $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
$(am__aclocal_m4_deps):
testh5ls.sh: $(top_builddir)/config.status $(srcdir)/testh5ls.sh.in
cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+testh5lsvds.sh: $(top_builddir)/config.status $(srcdir)/testh5lsvds.sh.in
+ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
install-binPROGRAMS: $(bin_PROGRAMS)
@$(NORMAL_INSTALL)
@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
diff --git a/tools/h5ls/h5ls.c b/tools/h5ls/h5ls.c
index fe128fa..98e3009 100644
--- a/tools/h5ls/h5ls.c
+++ b/tools/h5ls/h5ls.c
@@ -1847,6 +1847,32 @@ dataset_list2(hid_t dset, const char H5_ATTR_UNUSED *name)
h5tools_str_append(&buffer, "\n");
} /* end if */
break;
+ case H5D_VIRTUAL:
+ {
+ size_t vmaps;
+
+ H5Pget_virtual_count(dcpl, &vmaps);
+
+ if (vmaps) {
+ size_t next;
+ ssize_t ssize_out;
+
+ h5tools_str_append(&buffer, " %-10s {%ld} Source {\n", "Maps:", vmaps);
+ for (next = 0; next < (unsigned) vmaps; next++) {
+ ssize_out = H5Pget_virtual_filename(dcpl, next, NULL, 0);
+ H5Pget_virtual_filename(dcpl, next, f_name, sizeof(f_name));
+ ssize_out = H5Pget_virtual_dsetname(dcpl, next, NULL, 0);
+ H5Pget_virtual_dsetname(dcpl, next, dset_name, sizeof(dset_name));
+ h5tools_str_append(&buffer, " %-10s ", " ");
+ print_string(&buffer, f_name, TRUE);
+ h5tools_str_append(&buffer, " ");
+ print_string(&buffer, dset_name, TRUE);
+ h5tools_str_append(&buffer, "\n");
+ }
+ h5tools_str_append(&buffer, " %-10s}\n", " ");
+ }
+ }
+ break;
default:
break;
}
diff --git a/tools/h5ls/testh5lsvds.sh.in b/tools/h5ls/testh5lsvds.sh.in
new file mode 100644
index 0000000..d194992
--- /dev/null
+++ b/tools/h5ls/testh5lsvds.sh.in
@@ -0,0 +1,258 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+# Tests for the h5ls tool
+
+srcdir=@srcdir@
+
+TESTNAME=h5ls
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+H5LS=h5ls # The tool name
+H5LS_BIN=`pwd`/$H5LS # The path of the tool binary
+
+RM='rm -rf'
+CMP='cmp -s'
+DIFF='diff -c'
+CP='cp'
+NLINES=20 # Max. lines of output to display if test fails
+DIRNAME='dirname'
+LS='ls'
+AWK='awk'
+
+WORDS_BIGENDIAN="@WORDS_BIGENDIAN@"
+
+nerrors=0
+verbose=yes
+h5haveexitcode=yes # default is yes
+
+# source dirs
+SRC_TOOLS="$srcdir/.."
+SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
+
+# testfiles source dirs for tools
+SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
+SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
+SRC_H5DIFF_TESTFILES="$SRC_TOOLS/h5diff/testfiles"
+SRC_H5COPY_TESTFILES="$SRC_TOOLS/h5copy/testfiles"
+SRC_H5REPACK_TESTFILES="$SRC_TOOLS/h5repack/testfiles"
+SRC_H5JAM_TESTFILES="$SRC_TOOLS/h5jam/testfiles"
+SRC_H5STAT_TESTFILES="$SRC_TOOLS/h5stat/testfiles"
+SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/h5import/testfiles"
+
+TEST_P_DIR=./testfiles
+TESTDIR=./testfiles/vds
+test -d $TEST_P_DIR || mkdir -p $TEST_P_DIR
+test -d $TESTDIR || mkdir $TESTDIR
+
+######################################################################
+# test files
+# --------------------------------------------------------------------
+# All the test files copy from source directory to test directory
+# NOTE: Keep this framework to add/remove test files.
+# Any test files from other tools can be used in this framework.
+# This list are also used for checking exist.
+# Comment '#' without space can be used.
+# --------------------------------------------------------------------
+LIST_HDF5_TEST_FILES="
+$SRC_H5LS_TESTFILES/vds/1_a.h5
+$SRC_H5LS_TESTFILES/vds/1_b.h5
+$SRC_H5LS_TESTFILES/vds/1_c.h5
+$SRC_H5LS_TESTFILES/vds/1_d.h5
+$SRC_H5LS_TESTFILES/vds/1_e.h5
+$SRC_H5LS_TESTFILES/vds/1_f.h5
+$SRC_H5LS_TESTFILES/vds/1_vds.h5
+$SRC_H5LS_TESTFILES/vds/2_a.h5
+$SRC_H5LS_TESTFILES/vds/2_b.h5
+$SRC_H5LS_TESTFILES/vds/2_c.h5
+$SRC_H5LS_TESTFILES/vds/2_d.h5
+$SRC_H5LS_TESTFILES/vds/2_e.h5
+$SRC_H5LS_TESTFILES/vds/2_vds.h5
+$SRC_H5LS_TESTFILES/vds/3_1_vds.h5
+$SRC_H5LS_TESTFILES/vds/3_2_vds.h5
+$SRC_H5LS_TESTFILES/vds/4_0.h5
+$SRC_H5LS_TESTFILES/vds/4_1.h5
+$SRC_H5LS_TESTFILES/vds/4_2.h5
+$SRC_H5LS_TESTFILES/vds/4_vds.h5
+$SRC_H5LS_TESTFILES/vds/5_a.h5
+$SRC_H5LS_TESTFILES/vds/5_b.h5
+$SRC_H5LS_TESTFILES/vds/5_c.h5
+$SRC_H5LS_TESTFILES/vds/5_vds.h5
+"
+
+LIST_OTHER_TEST_FILES="
+$SRC_H5LS_TESTFILES/vds/tvds-1.ls
+$SRC_H5LS_TESTFILES/vds/tvds-2.ls
+$SRC_H5LS_TESTFILES/vds/tvds-3_1.ls
+$SRC_H5LS_TESTFILES/vds/tvds-3_2.ls
+$SRC_H5LS_TESTFILES/vds/tvds-4.ls
+$SRC_H5LS_TESTFILES/vds/tvds-5.ls
+"
+
+
+# RUNSERIAL is used. Check if it can return exit code from executalbe correctly.
+if [ -n "$RUNSERIAL_NOEXITCODE" ]; then
+ echo "***Warning*** Serial Exit Code is not passed back to shell corretly."
+ echo "***Warning*** Exit code checking is skipped."
+ h5haveexitcode=no
+fi
+
+#
+# copy test files and expected output files from source dirs to test dir
+#
+COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES"
+
+COPY_TESTFILES_TO_TESTDIR()
+{
+ # copy test files. Used -f to make sure get a new copy
+ for tstfile in $COPY_TESTFILES
+ do
+ # ignore '#' comment
+ echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
+ RET=$?
+ if [ $RET -eq 1 ]; then
+ # skip cp if srcdir is same as destdir
+ # this occurs when build/test performed in source dir and
+ # make cp fail
+ SDIR=`$DIRNAME $tstfile`
+ INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+ INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
+ if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+ $CP -f $tstfile $TESTDIR
+ if [ $? -ne 0 ]; then
+ echo "Error: FAILED to copy $tstfile ."
+
+ # Comment out this to CREATE expected file
+ exit $EXIT_FAILURE
+ fi
+ fi
+ fi
+ done
+}
+
+CLEAN_TESTFILES_AND_TESTDIR()
+{
+ # skip rm if srcdir is same as destdir
+ # this occurs when build/test performed in source dir and
+ # make cp fail
+ SDIR=`$DIRNAME $tstfile`
+ INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+ INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
+ if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+ $RM $TESTDIR
+ fi
+}
+
+# Print a line-line message left justified in a field of 70 characters
+# beginning with the word "Testing".
+TESTING() {
+ SPACES=" "
+ echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
+}
+
+# Source in the output filter function definitions.
+. $srcdir/../../bin/output_filter.sh
+
+# Run a test and print PASS or *FAIL*. For now, if h5ls can complete
+# with exit status 0, consider it pass. If a test fails then increment
+# the `nerrors' global variable and (if $verbose is set) display up to $NLINS
+# lines of the actual output from the tool test. The actual output is not
+# removed if $HDF5_NOCLEANUP has a non-zero value.
+# Arguemnts:
+# $1 -- actual output filename to use
+# $2 and on -- argument for the h5ls tool
+TOOLTEST() {
+ expect="$TESTDIR/$1"
+ actual="$TESTDIR/`basename $1 .ls`.out"
+ actual_err="$TESTDIR/`basename $1 .ls`.err"
+ actual_sav=${actual}-sav
+ actual_err_sav=${actual_err}-sav
+ shift
+ retvalexpect=$1
+ shift
+
+ # Run test.
+ # Stderr is included in stdout so that the diff can detect
+ # any unexpected output from that stream too.
+ TESTING $H5LS $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5LS_BIN "$@"
+ ) >$actual 2>$actual_err
+
+ exitcode=$?
+ # save actual and actual_err in case they are needed later.
+ cp $actual $actual_sav
+ STDOUT_FILTER $actual
+ cp $actual_err $actual_err_sav
+ STDERR_FILTER $actual_err
+ cat $actual_err >> $actual
+ if [ $h5haveexitcode = 'yes' -a $exitcode -ne $retvalexpect ]; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ if [ yes = "$verbose" ]; then
+ echo "test returned with exit code $exitcode"
+ echo "test output: (up to $NLINES lines)"
+ head -$NLINES $actual
+ echo "***end of test output***"
+ echo ""
+ fi
+ elif [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result differs from actual result"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actual_err $actual_sav $actual_err_sav
+ fi
+}
+
+##############################################################################
+##############################################################################
+### T H E T E S T S ###
+##############################################################################
+##############################################################################
+# prepare for test
+COPY_TESTFILES_TO_TESTDIR
+
+####### test for dataset vds ######
+
+TOOLTEST tvds-1.ls 0 -w80 -v -S 1_vds.h5
+TOOLTEST tvds-2.ls 0 -w80 -v -S 2_vds.h5
+TOOLTEST tvds-3_1.ls 0 -w80 -v -S 3_1_vds.h5
+TOOLTEST tvds-3_2.ls 0 -w80 -v -S 3_2_vds.h5
+TOOLTEST tvds-4.ls 0 -w80 -v -S 4_vds.h5
+TOOLTEST tvds-5.ls 0 -w80 -v -S 5_vds.h5
+
+# Clean up temporary files/directories
+CLEAN_TESTFILES_AND_TESTDIR
+
+if test $nerrors -eq 0 ; then
+ echo "All $TESTNAME tests passed."
+ exit $EXIT_SUCCESS
+else
+ echo "$TESTNAME tests failed with $nerrors errors."
+ exit $EXIT_FAILURE
+fi
diff --git a/tools/h5repack/CMakeTests.cmake b/tools/h5repack/CMakeTests.cmake
index dee97ed..caad5c1 100644
--- a/tools/h5repack/CMakeTests.cmake
+++ b/tools/h5repack/CMakeTests.cmake
@@ -14,14 +14,14 @@
multi
family
)
-
+
if (DIRECT_VFD)
set (VFD_LIST ${VFD_LIST} direct)
endif (DIRECT_VFD)
MACRO (ADD_VFD_TEST vfdname resultcode)
add_test (
- NAME H5REPACK-VFD-${vfdname}-h5repacktest
+ NAME H5REPACK-VFD-${vfdname}-h5repacktest
COMMAND "${CMAKE_COMMAND}"
-D "TEST_PROGRAM=$<TARGET_FILE:h5repacktest>"
-D "TEST_ARGS:STRING="
@@ -37,7 +37,7 @@
set (last_test "H5REPACK-VFD-${vfdname}-h5repacktest")
ENDMACRO (ADD_VFD_TEST)
endif (HDF5_TEST_VFD)
-
+
# --------------------------------------------------------------------
# Copy all the HDF5 files from the source directory into the test directory
# --------------------------------------------------------------------
@@ -77,6 +77,30 @@
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00008.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00009.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00010.h5
+ # tools/testfiles/vds
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_a.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_b.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_c.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_d.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_e.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_f.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/1_vds.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_a.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_b.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_c.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_d.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_e.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/2_vds.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/3_1_vds.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/3_2_vds.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/4_0.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/4_1.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/4_2.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/4_vds.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/5_a.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/5_b.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/5_c.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/vds/5_vds.h5
)
set (LIST_OTHER_TEST_FILES
@@ -346,7 +370,7 @@
add_test (
NAME H5REPACK_UD-${testname}-clearall-objects
COMMAND ${CMAKE_COMMAND}
- -E remove
+ -E remove
testfiles/out-${testname}.${resultfile}
testfiles/${testname}.${resultfile}.out
testfiles/${testname}.${resultfile}.out.err
@@ -392,7 +416,7 @@
##############################################################################
# --------------------------------------------------------------------
- # test file names
+ # test file names
# --------------------------------------------------------------------
set (INFO_FILE testfiles/h5repack.info)
@@ -415,12 +439,18 @@
set (FILE18 h5repack_layout2.h5)
set (FILE_REF h5repack_refs.h5)
set (FILE_ATTR_REF h5repack_attr_refs.h5)
-
+ set (FILEV1 1_vds.h5)
+ set (FILEV2 2_vds.h5)
+ set (FILEV3_1 3_1_vds.h5)
+ set (FILEV3_2 3_2_vds.h5)
+ set (FILEV4 4_vds.h5)
+ set (FILEV5 5_vds.h5)
+
# Remove any output file left over from previous test run
add_test (
NAME H5REPACK-clearall-objects
COMMAND ${CMAKE_COMMAND}
- -E remove
+ -E remove
./testfiles/h5dump-help.out
./testfiles/h5repack_filters.h5-gzip_verbose_filters.out
./testfiles/h5repack_filters.h5-gzip_verbose_filters.out.err
@@ -555,12 +585,41 @@
./testfiles/out-meta_short_N.meta_short.h5
./testfiles/out-meta_long_M.meta_long.h5
./testfiles/out-meta_long_N.meta_long.h5
- # from the h5repacktst
+ ./testfiles/1_vds.h5-vds_dset_compa-v.out
+ ./testfiles/1_vds.h5-vds_dset_compa-v.out.err
+ ./testfiles/1_vds.h5-vds_dset_conti-v.out
+ ./testfiles/1_vds.h5-vds_dset_conti-v.out.err
+ ./testfiles/2_vds.h5-vds_null_compa-v.out
+ ./testfiles/2_vds.h5-vds_null_compa-v.out.err
+ ./testfiles/2_vds.h5-vds_null_conti-v.out
+ ./testfiles/2_vds.h5-vds_null_conti-v.out.err
+ ./testfiles/4_vds.h5-vds_compa-v.out
+ ./testfiles/4_vds.h5-vds_compa-v.out.err
+ ./testfiles/4_vds.h5-vds_compa_compa-v.out
+ ./testfiles/4_vds.h5-vds_compa_compa-v.out.err
+ ./testfiles/4_vds.h5-vds_compa_conti-v.out
+ ./testfiles/4_vds.h5-vds_compa_conti-v.out.err
+ ./testfiles/4_vds.h5-vds_conti-v.out
+ ./testfiles/4_vds.h5-vds_conti-v.out.err
+ ./testfiles/4_vds.h5-vds_conti_compa-v.out
+ ./testfiles/4_vds.h5-vds_conti_compa-v.out.err
+ ./testfiles/4_vds.h5-vds_conti_conti-v.out
+ ./testfiles/4_vds.h5-vds_conti_conti-v.out.err
+ ./testfiles/out-vds_compa.4_vds.h5
+ ./testfiles/out-vds_compa_compa.4_vds.h5
+ ./testfiles/out-vds_compa_conti.4_vds.h5
+ ./testfiles/out-vds_conti.4_vds.h5
+ ./testfiles/out-vds_conti_compa.4_vds.h5
+ ./testfiles/out-vds_conti_conti.4_vds.h5
+ ./testfiles/out-vds_dset_compa.1_vds.h5
+ ./testfiles/out-vds_dset_conti.1_vds.h5
+ ./testfiles/out-vds_null_compa.2_vds.h5
+ ./testfiles/out-vds_null_conti.2_vds.h5
h5repack_attr.h5
h5repack_attr_out.h5
h5repack_attr_refs.h5
h5repack_big.h5
- h5repack_deflate.h5
+ h5repack_deflate.h5
h5repack_deflate_out.h5
h5repack_early2.h5
h5repack_early.h5
@@ -588,7 +647,7 @@
h5repack_refs.h5
h5repack_shuffle.h5
h5repack_shuffle_out.h5
- h5repack_soffset.h5
+ h5repack_soffset.h5
h5repack_soffset_out.h5
h5repack_szip.h5
h5repack_szip_out.h5
@@ -628,14 +687,14 @@
# Each run generates "<file>.out.h5" and the tool h5diff is used to
# compare the input and output files
#
-# the tests are the same as the program h5repacktst, but run from the CLI
+# the tests are the same as the program h5repacktst, but run from the CLI
#
# See which filters are usable (and skip tests for filters we
# don't have). Do this by searching H5pubconf.h to see which
# filters are defined.
-# detect whether the encoder is present.
+# detect whether the encoder is present.
set (USE_FILTER_SZIP_ENCODER "no")
if (HDF5_ENABLE_SZIP_ENCODING)
set (USE_FILTER_SZIP_ENCODER ${testh5repack_detect_szip})
@@ -649,7 +708,7 @@
set (USE_FILTER_SZIP "true")
endif (H5_HAVE_FILTER_SZIP)
-# copy files (these files have no filters)
+# copy files (these files have no filters)
ADD_H5_TEST (fill "TEST" ${FILE0})
ADD_H5_TEST (objs "TEST" ${FILE1})
ADD_H5_TEST (attr "TEST" ${FILE2})
@@ -666,8 +725,8 @@
set (TESTTYPE "SKIP")
endif (NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (gzip_individual ${TESTTYPE} ${arg})
-
-# gzip for all
+
+# gzip for all
set (arg ${FILE4} -f GZIP=1)
set (TESTTYPE "TEST")
if (NOT USE_FILTER_DEFLATE)
@@ -681,7 +740,7 @@
if (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
set (TESTTYPE "SKIP")
endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
- ADD_H5_TEST (szip_individual ${TESTTYPE} ${arg})
+ ADD_H5_TEST (szip_individual ${TESTTYPE} ${arg})
# szip for all
set (arg ${FILE4} -f SZIP=8,NN)
@@ -689,16 +748,16 @@
if (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
set (TESTTYPE "SKIP")
endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
- ADD_H5_TEST (szip_all ${TESTTYPE} ${arg})
+ ADD_H5_TEST (szip_all ${TESTTYPE} ${arg})
# shuffle with individual object
set (arg ${FILE4} -f dset2:SHUF -l dset2:CHUNK=20x10)
- ADD_H5_TEST (shuffle_individual "TEST" ${arg})
+ ADD_H5_TEST (shuffle_individual "TEST" ${arg})
# shuffle for all
set (arg ${FILE4} -f SHUF)
ADD_H5_TEST (shuffle_all "TEST" ${arg})
-
+
# fletcher32 with individual object
set (arg ${FILE4} -f dset2:FLET -l dset2:CHUNK=20x10)
ADD_H5_TEST (fletcher_individual "TEST" ${arg})
@@ -722,7 +781,7 @@
set (TESTTYPE "SKIP")
endif (NOT USE_FILTER_DEFLATE)
ADD_H5_CMP_TEST (gzip_verbose_filters "O?...ing file[^\n]+\n" ${TESTTYPE} 0 ${arg})
-
+
###########################################################
# the following tests assume the input files have filters
###########################################################
@@ -734,7 +793,7 @@
set (TESTTYPE "SKIP")
endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
ADD_H5_TEST (szip_copy ${TESTTYPE} ${arg})
-
+
# szip remove
set (arg ${FILE7} --filter=dset_szip:NONE)
set (TESTTYPE "TEST")
@@ -742,7 +801,7 @@
set (TESTTYPE "SKIP")
endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
ADD_H5_TEST (szip_remove ${TESTTYPE} ${arg})
-
+
# deflate copy
set (arg ${FILE8})
set (TESTTYPE "TEST")
@@ -758,7 +817,7 @@
set (TESTTYPE "SKIP")
endif (NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (deflate_remove ${TESTTYPE} ${arg})
-
+
# shuffle copy
set (arg ${FILE9})
ADD_H5_TEST (shuffle_copy "TEST" ${arg})
@@ -813,14 +872,14 @@
if (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_DEFLATE)
set (TESTTYPE "SKIP")
endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_DEFLATE)
- ADD_H5_TEST (deflate_convert ${TESTTYPE} ${arg})
+ ADD_H5_TEST (deflate_convert ${TESTTYPE} ${arg})
set (arg ${FILE7} -f dset_szip:GZIP=1)
set (TESTTYPE "TEST")
if (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_DEFLATE)
set (TESTTYPE "SKIP")
endif (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_DEFLATE)
- ADD_H5_TEST (szip_convert ${TESTTYPE} ${arg})
+ ADD_H5_TEST (szip_convert ${TESTTYPE} ${arg})
#limit
set (arg ${FILE4} -f GZIP=1 -m 1024)
@@ -836,7 +895,7 @@
if (NOT USE_FILTER_DEFLATE)
set (TESTTYPE "SKIP")
endif (NOT USE_FILTER_DEFLATE)
- ADD_H5_TEST (deflate_file ${TESTTYPE} ${arg})
+ ADD_H5_TEST (deflate_file ${TESTTYPE} ${arg})
#########################################################
# layout options (these files have no filters)
@@ -865,18 +924,18 @@
ADD_H5_VERIFY_TEST (contig_small_compa "TEST" 0 ${FILE18} contig_small COMPACT -l contig_small:COMPA)
ADD_H5_VERIFY_TEST (contig_small_fixed_compa "TEST" 0 ${FILE18} chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA)
-#---------------------------------------------------------------------------
-# Test file contains chunked datasets (need multiple dsets) with
+#---------------------------------------------------------------------------
+# Test file contains chunked datasets (need multiple dsets) with
# unlimited max dims. (HDFFV-7933)
# Use first dset to test.
#---------------------------------------------------------------------------
# chunk to chunk - specify chunk dim bigger than any current dim
ADD_H5_VERIFY_TEST (chunk2chunk "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300)
-# chunk to contiguous
+# chunk to contiguous
ADD_H5_VERIFY_TEST (chunk2conti "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI)
-# chunk to compact - convert big dataset (should be > 64k) for this purpose,
+# chunk to compact - convert big dataset (should be > 64k) for this purpose,
# should remain as original layout (chunk)
ADD_H5_VERIFY_TEST (chunk2compa "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA)
@@ -884,7 +943,7 @@
# Test -f for some specific cases. Chunked dataset with unlimited max dims.
# (HDFFV-8012)
#--------------------------------------------------------------------------
-# - should not fail
+# - should not fail
# - should not change max dims from unlimit
# chunk dim is bigger than dataset dim. ( dset size < 64k )
@@ -900,13 +959,13 @@
ADD_H5_TEST (error4 "TEST" h5repack_layout3.h5 -f NONE)
#--------------------------------------------------------------------------
-# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset
+# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset
# (dset size < 64K) and with unlimited max dims on a condition as follow.
# (HDFFV-8214)
#--------------------------------------------------------------------------
# chunk dim is bigger than dataset dim. should succeed.
ADD_H5_VERIFY_TEST (ckdim_biger "TEST" 0 h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI)
-# chunk dim is smaller than dataset dim. should succeed.
+# chunk dim is smaller than dataset dim. should succeed.
ADD_H5_VERIFY_TEST (ckdim_smaller "TEST" 0 h5repack_layout3.h5 chunk_unlimit3 CONTI -l chunk_unlimit3:CONTI)
@@ -975,11 +1034,11 @@
ADD_H5_TEST (bug1814 "TEST" ${FILE_REF})
# test attribute with various references (bug1797 / HDFFV-5932)
-# the references in attribute of compund or vlen datatype
+# the references in attribute of compund or vlen datatype
ADD_H5_TEST (HDFFV-5932 "TEST" ${FILE_ATTR_REF})
-# Add test for memory leak in attirbute. This test is verified by CTEST.
-# 1. leak from vlen string
+# Add test for memory leak in attirbute. This test is verified by CTEST.
+# 1. leak from vlen string
# 2. leak from compound type without reference member
# (HDFFV-7840, )
# Note: this test is experimental for sharing test file among tools
@@ -989,6 +1048,26 @@
ADD_H5_TEST_META (meta_short h5repack_layout.h5 -M 8192)
ADD_H5_TEST_META (meta_long h5repack_layout.h5 --metadata_block_size=8192)
+# VDS tests
+
+#########################################################
+# layout options
+#########################################################
+ ADD_H5_VERIFY_TEST (vds_dset_conti "TEST" 0 ${FILEV1} vds_dset CONTIGUOUS -l vds_dset:CONTI)
+ ADD_H5_VERIFY_TEST (vds_null_conti "TEST" 1 ${FILEV2} null CONTIGUOUS -l CONTI)
+ ADD_H5_VERIFY_TEST (vds_dset_compa "TEST" 0 ${FILEV1} vds_dset COMPACT -l vds_dset:COMPA)
+ ADD_H5_VERIFY_TEST (vds_null_compa "TEST" 1 ${FILEV2} null COMPACT -l COMPA)
+
+################################################################
+# layout conversions
+###############################################################
+ ADD_H5_VERIFY_TEST (vds_compa_conti "TEST" 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI)
+ ADD_H5_VERIFY_TEST (vds_compa_compa "TEST" 0 ${FILEV4} vds_dset COMPACT -l vds_dset:COMPA)
+ ADD_H5_VERIFY_TEST (vds_conti_compa "TEST" 0 ${FILEV4} vds_dset COMPACT -l vds_dset:COMPA)
+ ADD_H5_VERIFY_TEST (vds_conti_conti "TEST" 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI)
+ ADD_H5_VERIFY_TEST (vds_compa "TEST" 0 ${FILEV4} vds_dset COMPACT -l vds_dset:COMPA)
+ ADD_H5_VERIFY_TEST (vds_conti "TEST" 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI)
+
##############################################################################
### P L U G I N T E S T S
##############################################################################
diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in
index 4a32491..478ca36 100644
--- a/tools/h5repack/h5repack.sh.in
+++ b/tools/h5repack/h5repack.sh.in
@@ -18,7 +18,7 @@
# Modification:
# Pedro Vicente Nunes, 11/15/2006
# Added $FILEN variables for file names
-#
+#
srcdir=@srcdir@
@@ -32,7 +32,7 @@ EXIT_FAILURE=1
H5REPACK=h5repack # The tool name
H5REPACK_BIN=`pwd`/$H5REPACK # The path of the tool binary
-H5DIFF=../h5diff/h5diff # The h5diff tool name
+H5DIFF=../h5diff/h5diff # The h5diff tool name
H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
H5DUMP=../h5dump/h5dump # The h5dump tool name
@@ -45,8 +45,8 @@ DIRNAME='dirname'
LS='ls'
AWK='awk'
-H5DETECTSZIP=testh5repack_detect_szip
-H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP
+H5DETECTSZIP=testh5repack_detect_szip
+H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP
nerrors=0
@@ -113,6 +113,29 @@ $SRC_TOOLS_TESTFILES/tfamily00007.h5
$SRC_TOOLS_TESTFILES/tfamily00008.h5
$SRC_TOOLS_TESTFILES/tfamily00009.h5
$SRC_TOOLS_TESTFILES/tfamily00010.h5
+$SRC_TOOLS_TESTFILES/vds/1_a.h5
+$SRC_TOOLS_TESTFILES/vds/1_b.h5
+$SRC_TOOLS_TESTFILES/vds/1_c.h5
+$SRC_TOOLS_TESTFILES/vds/1_d.h5
+$SRC_TOOLS_TESTFILES/vds/1_e.h5
+$SRC_TOOLS_TESTFILES/vds/1_f.h5
+$SRC_TOOLS_TESTFILES/vds/1_vds.h5
+$SRC_TOOLS_TESTFILES/vds/2_a.h5
+$SRC_TOOLS_TESTFILES/vds/2_b.h5
+$SRC_TOOLS_TESTFILES/vds/2_c.h5
+$SRC_TOOLS_TESTFILES/vds/2_d.h5
+$SRC_TOOLS_TESTFILES/vds/2_e.h5
+$SRC_TOOLS_TESTFILES/vds/2_vds.h5
+$SRC_TOOLS_TESTFILES/vds/3_1_vds.h5
+$SRC_TOOLS_TESTFILES/vds/3_2_vds.h5
+$SRC_TOOLS_TESTFILES/vds/4_0.h5
+$SRC_TOOLS_TESTFILES/vds/4_1.h5
+$SRC_TOOLS_TESTFILES/vds/4_2.h5
+$SRC_TOOLS_TESTFILES/vds/4_vds.h5
+$SRC_TOOLS_TESTFILES/vds/5_a.h5
+$SRC_TOOLS_TESTFILES/vds/5_b.h5
+$SRC_TOOLS_TESTFILES/vds/5_c.h5
+$SRC_TOOLS_TESTFILES/vds/5_vds.h5
"
LIST_OTHER_TEST_FILES="
@@ -148,10 +171,10 @@ COPY_TESTFILES_TO_TESTDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $TESTDIR
+ $CP -f $tstfile $TESTDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
-
+
# Comment out this to CREATE expected file
exit $EXIT_FAILURE
fi
@@ -203,12 +226,12 @@ SKIP() {
# Call the h5diff tool
#
-DIFFTEST()
+DIFFTEST()
{
VERIFY h5diff output $@
(
cd $TESTDIR
- $RUNSERIAL $H5DIFF_BIN -q "$@"
+ $RUNSERIAL $H5DIFF_BIN -q "$@"
)
RET=$?
if [ $RET != 0 ] ; then
@@ -217,7 +240,7 @@ DIFFTEST()
else
echo " PASSED"
fi
-
+
}
# Call h5repack
@@ -225,7 +248,7 @@ DIFFTEST()
# call TOOLTEST_MAIN and delete $output file
-TOOLTEST()
+TOOLTEST()
{
echo $@
infile=$2
@@ -251,7 +274,7 @@ TOOLTEST()
}
#------------------------------------------
-# Verifying layouts of a dataset
+# Verifying layouts of a dataset
VERIFY_LAYOUT_DSET()
{
layoutfile=layout-$1.$2
@@ -263,9 +286,9 @@ VERIFY_LAYOUT_DSET()
shift
shift
shift
-
+
TESTING $H5REPACK $@
- (
+ (
cd $TESTDIR
$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
)
@@ -277,7 +300,7 @@ VERIFY_LAYOUT_DSET()
echo " PASSED"
DIFFTEST $infile $outfile
fi
-
+
#---------------------------------
# check the layout from a dataset
VERIFY "a dataset layout"
@@ -309,9 +332,9 @@ VERIFY_LAYOUT_ALL()
shift
shift
shift
-
+
TESTING $H5REPACK $@
- (
+ (
cd $TESTDIR
$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
)
@@ -323,8 +346,8 @@ VERIFY_LAYOUT_ALL()
echo " PASSED"
DIFFTEST $infile $outfile
fi
-
-
+
+
#---------------------------------
# check the layout from a dataset
# check if the other layouts still exsit
@@ -351,7 +374,7 @@ VERIFY_LAYOUT_ALL()
echo " PASSED"
fi
fi
- else
+ else
# if COMPACT
if [ $expectlayout = "COMPACT" ]; then
TESTING $H5DUMP_BIN -pH $outfile
@@ -403,7 +426,7 @@ VERIFY_LAYOUT_ALL()
# same as TOOLTEST, but it uses the old syntax -i input_file -o output_file
#
-TOOLTEST0()
+TOOLTEST0()
{
infile=$2
outfile=out-$1.$2
@@ -431,7 +454,7 @@ TOOLTEST0()
# same as TOOLTEST, but it uses without -i -o options
# used to test the family driver, where these files reside
#
-TOOLTEST1()
+TOOLTEST1()
{
infile=$2
outfile=out-$1.$2
@@ -446,19 +469,19 @@ TOOLTEST1()
)
RET=$?
if [ $RET != 0 ] ; then
- echo "*FAILED*"
- nerrors="`expr $nerrors + 1`"
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
else
- echo " PASSED"
- DIFFTEST $infile $outfile
+ echo " PASSED"
+ DIFFTEST $infile $outfile
fi
rm -f $outfile
}
-
+
# This is same as TOOLTEST() with comparing display output
# from -v option
#
-TOOLTESTV()
+TOOLTESTV()
{
expect="$TESTDIR/$2.tst"
actual="$TESTDIR/`basename $2 .ddl`.out"
@@ -468,7 +491,7 @@ TOOLTESTV()
outfile=out-$1.$2
shift
shift
-
+
# Run test.
TESTING $H5REPACK $@
(
@@ -477,11 +500,11 @@ TOOLTESTV()
) >$actual 2>$actual_err
RET=$?
if [ $RET != 0 ] ; then
- echo "*FAILED*"
- nerrors="`expr $nerrors + 1`"
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
else
- echo " PASSED"
- DIFFTEST $infile $outfile
+ echo " PASSED"
+ DIFFTEST $infile $outfile
fi
# display output compare
@@ -497,15 +520,15 @@ TOOLTESTV()
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /'
fi
-
+
rm -f $actual $actual_err
rm -f $outfile
}
-
+
# This is same as TOOLTESTV() with comparing h5dump output
# from -pH option
#
-TOOLTEST_DUMP()
+TOOLTEST_DUMP()
{
infile=$2
outfile=out-$1.$2
@@ -515,7 +538,7 @@ TOOLTEST_DUMP()
shift
shift
-
+
# Run test.
TESTING $H5REPACK $@
(
@@ -531,12 +554,12 @@ TOOLTEST_DUMP()
VERIFY h5dump output $@
(
cd $TESTDIR
- $RUNSERIAL $H5DUMP_BIN -pH $outfile
+ $RUNSERIAL $H5DUMP_BIN -pH $outfile
) >$actual 2>$actual_err
cat $actual_err >> $actual
RET=$?
-
+
fi
if cmp -s $expect $actual; then
@@ -547,7 +570,7 @@ TOOLTEST_DUMP()
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /'
fi
-
+
rm -f $actual $actual_err
rm -f $outfile
}
@@ -611,14 +634,14 @@ TOOLTEST_META()
# verify sizes.
MESSAGE "Verify the sizes of both output files ($size1 vs $size2)"
if [ $size1 -lt $size2 ]; then
- # pass
- echo " PASSED"
+ # pass
+ echo " PASSED"
else
- #fail
- echo "*FAILED*"
+ #fail
+ echo "*FAILED*"
nerrors="`expr $nerrors + 1`"
fi
-
+
rm -f $outfile
}
# ADD_HELP_TEST
@@ -648,7 +671,7 @@ TOOLTEST_HELP() {
echo " Expected output (*.txt) differs from actual output (*.out)"
nerrors="`expr $nerrors + 1`"
fi
-
+
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actual $actual_err
@@ -674,28 +697,28 @@ STDOUT_FILTER() {
# Each run generates "<file>.out.h5" and the tool h5diff is used to
# compare the input and output files
#
-# the tests are the same as the program h5repacktst, but run from the CLI
+# the tests are the same as the program h5repacktst, but run from the CLI
#
# See which filters are usable (and skip tests for filters we
# don't have). Do this by searching H5pubconf.h to see which
# filters are defined.
-# detect whether the encoder is present.
+# detect whether the encoder is present.
USE_FILTER_SZIP_ENCODER="no";
if test $USE_FILTER_SZIP = "yes"; then
USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN`
fi
##############################################################################
-### T H E T E S T S
+### T H E T E S T S
##############################################################################
# prepare for test
COPY_TESTFILES_TO_TESTDIR
TOOLTEST_HELP h5repack-help.txt -h
-# copy files (these files have no filters)
+# copy files (these files have no filters)
TOOLTEST fill h5repack_fill.h5
TOOLTEST objs h5repack_objs.h5
TOOLTEST attr h5repack_attr.h5
@@ -719,8 +742,8 @@ if test $USE_FILTER_DEFLATE != "yes" ; then
else
TOOLTEST gzip_individual $arg
fi
-
-# gzip for all
+
+# gzip for all
arg="h5repack_layout.h5 -f GZIP=1"
if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
@@ -733,7 +756,7 @@ arg="h5repack_layout.h5 -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
SKIP $arg
else
- TOOLTEST szip_individual $arg
+ TOOLTEST szip_individual $arg
fi
# szip for all
@@ -741,18 +764,18 @@ arg="h5repack_layout.h5 -f SZIP=8,NN"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
SKIP $arg
else
- TOOLTEST szip_all $arg
+ TOOLTEST szip_all $arg
fi
# shuffle with individual object
arg="h5repack_layout.h5 -f dset2:SHUF -l dset2:CHUNK=20x10"
-TOOLTEST shuffle_individual $arg
-
+TOOLTEST shuffle_individual $arg
+
# shuffle for all
arg="h5repack_layout.h5 -f SHUF"
TOOLTEST shuffle_all $arg
-
+
# fletcher32 with individual object
arg="h5repack_layout.h5 -f dset2:FLET -l dset2:CHUNK=20x10"
TOOLTEST fletcher_individual $arg
@@ -777,7 +800,7 @@ else
# compare output
TOOLTESTV gzip_verbose_filters $arg
fi
-
+
###########################################################
# the following tests assume the input files have filters
###########################################################
@@ -789,7 +812,7 @@ if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
else
TOOLTEST szip_copy $arg
fi
-
+
# szip remove
arg="h5repack_szip.h5 --filter=dset_szip:NONE"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
@@ -797,7 +820,7 @@ if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
else
TOOLTEST szip_remove $arg
fi
-
+
# deflate copy
arg="h5repack_deflate.h5"
if test $USE_FILTER_DEFLATE != "yes" ; then
@@ -813,7 +836,7 @@ if test $USE_FILTER_DEFLATE != "yes" ; then
else
TOOLTEST deflate_remove $arg
fi
-
+
# shuffle copy
arg="h5repack_shuffle.h5"
TOOLTEST shuffle_copy $arg
@@ -868,14 +891,14 @@ arg="h5repack_deflate.h5 -f dset_deflate:SZIP=8,NN"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
- TOOLTEST deflate_convert $arg
+ TOOLTEST deflate_convert $arg
fi
arg="h5repack_szip.h5 -f dset_szip:GZIP=1"
if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
- TOOLTEST szip_convert $arg
+ TOOLTEST szip_convert $arg
fi
@@ -890,9 +913,9 @@ fi
#file
arg="h5repack_layout.h5 -e h5repack.info"
if test $USE_FILTER_DEFLATE != "yes" ; then
- SKIP $arg
+ SKIP $arg
else
- TOOLTEST deflate_file $arg
+ TOOLTEST deflate_file $arg
fi
#########################################################
@@ -937,18 +960,18 @@ VERIFY_LAYOUT_DSET contig_small_compa h5repack_layout2.h5 contig_small COMPACT -
VERIFY_LAYOUT_DSET contig_small_fixed_compa h5repack_layout2.h5 chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA
-#---------------------------------------------------------------------------
-# Test file contains chunked datasets (need multiple dsets) with
+#---------------------------------------------------------------------------
+# Test file contains chunked datasets (need multiple dsets) with
# unlimited max dims. (HDFFV-7933)
# Use first dset to test.
#---------------------------------------------------------------------------
# chunk to chunk - specify chunk dim bigger than any current dim
VERIFY_LAYOUT_DSET chunk2chunk h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300
-# chunk to contiguous
+# chunk to contiguous
VERIFY_LAYOUT_DSET chunk2conti h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI
-# chunk to compact - convert big dataset (should be > 64k) for this purpose,
+# chunk to compact - convert big dataset (should be > 64k) for this purpose,
# should remain as original layout (chunk)
VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA
@@ -956,7 +979,7 @@ VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk
# Test -f for some specific cases. Chunked dataset with unlimited max dims.
# (HDFFV-8012)
#--------------------------------------------------------------------------
-# - should not fail
+# - should not fail
# - should not change max dims from unlimit
# chunk dim is bigger than dataset dim. ( dset size < 64k )
@@ -972,14 +995,14 @@ VERIFY_LAYOUT_DSET error3 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f ch
TOOLTEST error4 h5repack_layout3.h5 -f NONE
#--------------------------------------------------------------------------
-# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset
+# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset
# (dset size < 64K) and with unlimited max dims on a condition as follow.
# (HDFFV-8214)
#--------------------------------------------------------------------------
# chunk dim is bigger than dataset dim. should succeed.
VERIFY_LAYOUT_DSET ckdim_biger h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI
-# chunk dim is smaller than dataset dim. should succeed.
+# chunk dim is smaller than dataset dim. should succeed.
VERIFY_LAYOUT_DSET ckdim_smaller h5repack_layout3.h5 chunk_unlimit3 CONTI -l chunk_unlimit3:CONTI
@@ -1022,7 +1045,7 @@ if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
else
TOOLTEST0 old_style_layout_short_switches $arg
-fi
+fi
# add a userblock to file
arg="h5repack_objs.h5 -u ublock.bin -b 2048"
@@ -1049,20 +1072,40 @@ TOOLTEST1 family tfamily%05d.h5
TOOLTEST bug1814 h5repack_refs.h5
# test attribute with various references (bug1797 / HDFFV-5932)
-# the references in attribute of compund or vlen datatype
-TOOLTEST HDFFV-5932 h5repack_attr_refs.h5
+# the references in attribute of compund or vlen datatype
+TOOLTEST HDFFV-5932 h5repack_attr_refs.h5
-# Add test for memory leak in attirbute. This test is verified by CTEST.
-# 1. leak from vlen string
+# Add test for memory leak in attirbute. This test is verified by CTEST.
+# 1. leak from vlen string
# 2. leak from compound type without reference member
# (HDFFV-7840, )
# Note: this test is experimental for sharing test file among tools
TOOLTEST HDFFV-7840 h5diff_attr1.h5
-# tests for metadata block size option
+# tests for metadata block size option
TOOLTEST_META meta_short h5repack_layout.h5 -M 8192
TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192
+# VDS tests
+
+#########################################################
+# layout options
+#########################################################
+VERIFY_LAYOUT_DSET vds_dset_conti 1_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+VERIFY_LAYOUT_ALL vds_null_conti 2_vds.h5 CONTIGUOUS -l CONTI
+VERIFY_LAYOUT_DSET vds_dset_compa 1_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+VERIFY_LAYOUT_ALL vds_null_compa 2_vds.h5 COMPACT -l COMPA
+
+################################################################
+# layout conversions
+###############################################################
+VERIFY_LAYOUT_DSET vds_compa_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+VERIFY_LAYOUT_DSET vds_compa_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+VERIFY_LAYOUT_DSET vds_conti_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+VERIFY_LAYOUT_DSET vds_conti_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+VERIFY_LAYOUT_DSET vds_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+VERIFY_LAYOUT_DSET vds_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+
# Clean up temporary files/directories
CLEAN_TESTFILES_AND_TESTDIR
diff --git a/tools/h5stat/h5stat.c b/tools/h5stat/h5stat.c
index c19aba5..ac6ca23 100644
--- a/tools/h5stat/h5stat.c
+++ b/tools/h5stat/h5stat.c
@@ -1342,8 +1342,8 @@ print_dataset_info(const iter_t *iter)
printf("Dataset layout information:\n");
for(u = 0; u < H5D_NLAYOUTS; u++)
- printf("\tDataset layout counts[%s]: %lu\n", (u == 0 ? "COMPACT" :
- (u == 1 ? "CONTIG" : "CHUNKED")), iter->dset_layouts[u]);
+ printf("\tDataset layout counts[%s]: %lu\n", (u == H5D_COMPACT ? "COMPACT" :
+ (u == H5D_CONTIGUOUS ? "CONTIG" : (u == H5D_CHUNKED ? "CHUNKED" : "VIRTUAL"))), iter->dset_layouts[u]);
printf("\tNumber of external files : %lu\n", iter->nexternal);
printf("Dataset filters information:\n");
diff --git a/tools/h5stat/testfiles/h5stat_dims1.ddl b/tools/h5stat/testfiles/h5stat_dims1.ddl
index c285ea4..07b2900 100644
--- a/tools/h5stat/testfiles/h5stat_dims1.ddl
+++ b/tools/h5stat/testfiles/h5stat_dims1.ddl
@@ -31,6 +31,7 @@ Dataset layout information:
Dataset layout counts[COMPACT]: 0
Dataset layout counts[CONTIG]: 23
Dataset layout counts[CHUNKED]: 0
+ Dataset layout counts[VIRTUAL]: 0
Number of external files : 0
Dataset filters information:
Number of datasets with:
diff --git a/tools/h5stat/testfiles/h5stat_dims2.ddl b/tools/h5stat/testfiles/h5stat_dims2.ddl
index 769749e..dbccd05 100644
--- a/tools/h5stat/testfiles/h5stat_dims2.ddl
+++ b/tools/h5stat/testfiles/h5stat_dims2.ddl
@@ -22,6 +22,7 @@ Dataset layout information:
Dataset layout counts[COMPACT]: 0
Dataset layout counts[CONTIG]: 23
Dataset layout counts[CHUNKED]: 0
+ Dataset layout counts[VIRTUAL]: 0
Number of external files : 0
Dataset filters information:
Number of datasets with:
diff --git a/tools/h5stat/testfiles/h5stat_filters-d.ddl b/tools/h5stat/testfiles/h5stat_filters-d.ddl
index 2e0bd64..6e6dd61 100644
--- a/tools/h5stat/testfiles/h5stat_filters-d.ddl
+++ b/tools/h5stat/testfiles/h5stat_filters-d.ddl
@@ -18,6 +18,7 @@ Dataset layout information:
Dataset layout counts[COMPACT]: 1
Dataset layout counts[CONTIG]: 2
Dataset layout counts[CHUNKED]: 12
+ Dataset layout counts[VIRTUAL]: 0
Number of external files : 2
Dataset filters information:
Number of datasets with:
diff --git a/tools/h5stat/testfiles/h5stat_filters-dT.ddl b/tools/h5stat/testfiles/h5stat_filters-dT.ddl
index 9ef3e82..b14ca9f 100644
--- a/tools/h5stat/testfiles/h5stat_filters-dT.ddl
+++ b/tools/h5stat/testfiles/h5stat_filters-dT.ddl
@@ -18,6 +18,7 @@ Dataset layout information:
Dataset layout counts[COMPACT]: 1
Dataset layout counts[CONTIG]: 2
Dataset layout counts[CHUNKED]: 12
+ Dataset layout counts[VIRTUAL]: 0
Number of external files : 2
Dataset filters information:
Number of datasets with:
diff --git a/tools/h5stat/testfiles/h5stat_filters.ddl b/tools/h5stat/testfiles/h5stat_filters.ddl
index 24522cd..1a4fd72 100644
--- a/tools/h5stat/testfiles/h5stat_filters.ddl
+++ b/tools/h5stat/testfiles/h5stat_filters.ddl
@@ -56,6 +56,7 @@ Dataset layout information:
Dataset layout counts[COMPACT]: 1
Dataset layout counts[CONTIG]: 2
Dataset layout counts[CHUNKED]: 12
+ Dataset layout counts[VIRTUAL]: 0
Number of external files : 2
Dataset filters information:
Number of datasets with:
diff --git a/tools/h5stat/testfiles/h5stat_links2.ddl b/tools/h5stat/testfiles/h5stat_links2.ddl
index 09bf937..4622884 100644
--- a/tools/h5stat/testfiles/h5stat_links2.ddl
+++ b/tools/h5stat/testfiles/h5stat_links2.ddl
@@ -64,6 +64,7 @@ Dataset layout information:
Dataset layout counts[COMPACT]: 0
Dataset layout counts[CONTIG]: 23
Dataset layout counts[CHUNKED]: 0
+ Dataset layout counts[VIRTUAL]: 0
Number of external files : 0
Dataset filters information:
Number of datasets with:
diff --git a/tools/h5stat/testfiles/h5stat_newgrat.ddl b/tools/h5stat/testfiles/h5stat_newgrat.ddl
index 33d756b..e305f58 100644
--- a/tools/h5stat/testfiles/h5stat_newgrat.ddl
+++ b/tools/h5stat/testfiles/h5stat_newgrat.ddl
@@ -54,6 +54,7 @@ Dataset layout information:
Dataset layout counts[COMPACT]: 0
Dataset layout counts[CONTIG]: 1
Dataset layout counts[CHUNKED]: 0
+ Dataset layout counts[VIRTUAL]: 0
Number of external files : 0
Dataset filters information:
Number of datasets with:
diff --git a/tools/h5stat/testfiles/h5stat_numattrs2.ddl b/tools/h5stat/testfiles/h5stat_numattrs2.ddl
index 1313aec..ccb23c1 100644
--- a/tools/h5stat/testfiles/h5stat_numattrs2.ddl
+++ b/tools/h5stat/testfiles/h5stat_numattrs2.ddl
@@ -65,6 +65,7 @@ Dataset layout information:
Dataset layout counts[COMPACT]: 0
Dataset layout counts[CONTIG]: 23
Dataset layout counts[CHUNKED]: 0
+ Dataset layout counts[VIRTUAL]: 0
Number of external files : 0
Dataset filters information:
Number of datasets with:
diff --git a/tools/h5stat/testfiles/h5stat_tsohm.ddl b/tools/h5stat/testfiles/h5stat_tsohm.ddl
index 37de79b..4cf33fc 100644
--- a/tools/h5stat/testfiles/h5stat_tsohm.ddl
+++ b/tools/h5stat/testfiles/h5stat_tsohm.ddl
@@ -53,6 +53,7 @@ Dataset layout information:
Dataset layout counts[COMPACT]: 0
Dataset layout counts[CONTIG]: 0
Dataset layout counts[CHUNKED]: 3
+ Dataset layout counts[VIRTUAL]: 0
Number of external files : 0
Dataset filters information:
Number of datasets with:
diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h
index d6c3720..6512f9b 100644
--- a/tools/lib/h5tools.h
+++ b/tools/lib/h5tools.h
@@ -81,7 +81,7 @@
#define FLETCHER32 "CHECKSUM FLETCHER32"
#define SZIP "COMPRESSION SZIP"
#define NBIT "COMPRESSION NBIT"
-#define SCALEOFFSET "COMPRESSION SCALEOFFSET"
+#define SCALEOFFSET "COMPRESSION SCALEOFFSET"
#define SCALEOFFSET_MINBIT "MIN BITS"
#define STORAGE_LAYOUT "STORAGE_LAYOUT"
#define CONTIGUOUS "CONTIGUOUS"
@@ -93,6 +93,16 @@
#define PACKED_BITS "PACKED_BITS"
#define PACKED_OFFSET "OFFSET"
#define PACKED_LENGTH "LENGTH"
+#define VDS_VIRTUAL "VIRTUAL"
+#define VDS_MAPPING "MAPPING"
+#define VDS_SOURCE "SOURCE"
+#define VDS_REG_HYPERSLAB "SELECTION REGULAR_HYPERSLAB"
+#define VDS_IRR_HYPERSLAB "SELECTION IRREGULAR_HYPERSLAB"
+#define VDS_POINT "POINT"
+#define VDS_SRC_FILE "FILE"
+#define VDS_SRC_DATASET "DATASET"
+#define VDS_NONE "SELECTION NONE"
+#define VDS_ALL "SELECTION ALL"
#define BEGIN "{"
#define END "}"
@@ -182,6 +192,15 @@ typedef struct h5tools_dump_header_t {
const char *dataspacedimbegin;
const char *dataspacedimend;
+ const char *virtualselectionbegin;
+ const char *virtualselectionend;
+ const char *virtualselectionblockbegin;
+ const char *virtualselectionblockend;
+ const char *virtualfilenamebegin;
+ const char *virtualfilenameend;
+ const char *virtualdatasetnamebegin;
+ const char *virtualdatasetnameend;
+
} h5tools_dump_header_t;
/*
diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c
index 26cac47..3a06d3a 100644
--- a/tools/lib/h5tools_dump.c
+++ b/tools/lib/h5tools_dump.c
@@ -179,6 +179,15 @@ BLOCK, /*blockbegin */
"", /*dataspacedescriptionend */
"(", /*dataspacedimbegin */
")", /*dataspacedimend */
+
+"", /*virtualselectionbegin */
+"", /*virtualselectionend */
+"{", /*virtualselectionblockbegin */
+"}", /*virtualselectionblockend */
+"\"", /*virtualfilenamebeginbegin */
+"\"", /*virtualfilenamebeginend */
+"\"", /*virtualdatasetnamebegin */
+"\"", /*virtualdtatasetnameend */
};
const h5tools_dump_header_t* h5tools_dump_header_format;
@@ -216,6 +225,14 @@ void h5tools_print_dims(h5tools_str_t *buffer, hsize_t *s, int dims);
void h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info,
h5tools_context_t *ctx, struct subset_t *sset, int dims);
+void h5tools_print_virtual_selection(hid_t vspace, hid_t dcpl_id, size_t index,
+ FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/,
+ h5tools_str_t *buffer/*string into which to render */,
+ hsize_t *curr_pos/*total data element position*/,
+ size_t ncols, hsize_t region_elmt_counter/*element counter*/,
+ hsize_t elmt_counter);
+
void
h5tools_dump_init(void)
{
@@ -368,7 +385,7 @@ h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t contai
}
ctx->need_prefix = TRUE;
-
+
if(FALSE == dimension_break)
elmt_counter = 0;
} /* end for (i = 0; i < nelmts... */
@@ -810,7 +827,7 @@ h5tools_print_region_data_points(hid_t region_space, hid_t region_id,
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims");
dims1[0] = npoints;
-
+
/* Create dataspace for reading buffer */
if((mem_space = H5Screate_simple(1, dims1, NULL)) < 0)
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed");
@@ -1457,7 +1474,7 @@ h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_co
if((f_space = H5Dget_space(dset)) < 0)
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_space failed");
-
+
if((sndims = H5Sget_simple_extent_ndims(f_space)) < 0)
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed");
ctx->ndims = (unsigned)sndims;
@@ -1522,6 +1539,7 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont
/* Hyperslab info */
hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */
hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */
+ //hsize_t hs_count[H5S_MAX_RANK]; /* size this pass */
hsize_t hs_nelmts; /* elements in request */
/* VL data special information */
@@ -1604,9 +1622,11 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont
hs_size[i] = MIN(total_size[i] - hs_offset[i], sm_size[i]);
ctx->p_max_idx[i] = ctx->p_min_idx[i] + hs_size[i];
hs_nelmts *= hs_size[i];
+// hs_count[i] = 1;
}
H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL);
+// H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_count, hs_size);
H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL);
}
else {
@@ -1743,7 +1763,7 @@ CATCH
*-------------------------------------------------------------------------
*/
int
-h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
+h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
hid_t dset, struct subset_t *sset)
{
hid_t f_space = -1;
@@ -1819,7 +1839,7 @@ done:
*-------------------------------------------------------------------------
*/
int
-h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
+h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
hid_t obj_id, hid_t type, hid_t space, void *mem)
{
HERR_INIT(int, SUCCEED)
@@ -1898,18 +1918,18 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_
}
else
h5tools_str_append(buffer, "\"%s\"", obj->objname);
- }
+ }
else {
error_msg("unknown committed type.\n");
h5tools_setstatus(EXIT_FAILURE);
}
return ret_value;
- }
-
+ }
+
if (info->line_ncols > 0)
ncols = info->line_ncols;
-
+
switch (type_class) {
case H5T_INTEGER:
if (H5Tequal(type, H5T_STD_I8BE) == TRUE) {
@@ -2231,7 +2251,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed");
} /* end if */
else if(order == H5T_ORDER_BE) {
- if(H5Tset_order(str_type, H5T_ORDER_BE) < 0)
+ if(H5Tset_order(str_type, H5T_ORDER_BE) < 0)
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed");
} /* end if */
@@ -2262,7 +2282,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed");
} /* end if */
else if(order == H5T_ORDER_BE) {
- if(H5Tset_order(str_type, H5T_ORDER_BE) < 0)
+ if(H5Tset_order(str_type, H5T_ORDER_BE) < 0)
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed");
} /* end if */
@@ -2336,9 +2356,9 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_
h5tools_str_reset(buffer);
h5tools_str_append(buffer, "OPAQUE_TAG \"%s\";", ttag);
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
+
H5free_memory(ttag);
- }
+ }
ctx->indent_level--;
ctx->need_prefix = TRUE;
@@ -2352,7 +2372,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_
if((snmembers = H5Tget_nmembers(type)) < 0)
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed");
nmembers = (unsigned)snmembers;
-
+
h5tools_str_append(buffer, "H5T_COMPOUND %s", h5tools_dump_header_format->structblockbegin);
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -2407,7 +2427,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_
h5tools_str_reset(buffer);
h5tools_print_datatype(stream, buffer, info, ctx, super, TRUE);
-
+
if(H5Tclose(super) < 0)
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
@@ -2595,7 +2615,7 @@ h5tools_print_enum(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *i
if (info->line_ncols > 0)
ncols = info->line_ncols;
-
+
if((snmembs = H5Tget_nmembers(type)) < 0)
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed");
nmembs = (unsigned)snmembs;
@@ -2735,7 +2755,7 @@ h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info,
ncols = info->line_ncols;
ctx->need_prefix = TRUE;
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s %s ",
h5tools_dump_header_format->datatypebegin,
@@ -2757,7 +2777,7 @@ h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info,
/*-------------------------------------------------------------------------
* Function: dump_dataspace
*
- * Purpose: Dump the dataspace.
+ * Purpose: Dump the dataspace.
*
* Return: void
*
@@ -2783,7 +2803,7 @@ h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info,
ncols = info->line_ncols;
ctx->need_prefix = TRUE;
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s ",
h5tools_dump_header_format->dataspacebegin);
@@ -2833,7 +2853,7 @@ h5tools_dump_oid(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s %s %d %s", OBJID, BEGIN, oid, END);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -2841,7 +2861,79 @@ h5tools_dump_oid(FILE *stream, const h5tool_format_t *info,
h5tools_str_close(&buffer);
}
+/*-------------------------------------------------------------------------
+ * Function: print_virtual_selection
+ *
+ * Purpose: Print the virtual dataset selection.
+ *
+ * Return: void
+ *-------------------------------------------------------------------------
+ */
+void
+h5tools_print_virtual_selection(hid_t vspace, hid_t dcpl_id, size_t index,
+ FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/,
+ h5tools_str_t *buffer/*string into which to render */,
+ hsize_t *curr_pos/*total data element position*/,
+ size_t ncols, hsize_t region_elmt_counter/*element counter*/,
+ hsize_t elmt_counter)
+{
+ switch(H5Sget_select_type(vspace)) {
+ case H5S_SEL_NONE: /* Nothing selected */
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(buffer);
+ h5tools_str_append(buffer, "%s", VDS_NONE);
+ break;
+ case H5S_SEL_POINTS: /* Sequence of points selected */
+ h5tools_str_reset(buffer);
+ h5tools_str_append(buffer, "%s %s ", VDS_POINT, h5tools_dump_header_format->virtualselectionblockbegin);
+ h5tools_str_dump_space_points(buffer, vspace, info);
+ h5tools_str_append(buffer, " %s", h5tools_dump_header_format->virtualselectionblockend);
+ break;
+ case H5S_SEL_HYPERSLABS: /* "New-style" hyperslab selection defined */
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+ h5tools_str_reset(buffer);
+ if (H5Sis_regular_hyperslab(vspace)) {
+ h5tools_str_append(buffer, "%s %s ", VDS_REG_HYPERSLAB, h5tools_dump_header_format->virtualselectionblockbegin);
+ h5tools_render_element(stream, info, ctx, buffer, curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+
+ h5tools_str_reset(buffer);
+ h5tools_str_dump_space_slabs(buffer, vspace, info, ctx);
+ }
+ else {
+ h5tools_str_append(buffer, "%s %s ", VDS_IRR_HYPERSLAB, h5tools_dump_header_format->virtualselectionblockbegin);
+ h5tools_render_element(stream, info, ctx, buffer, curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+ ctx->indent_level++;
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(buffer);
+ h5tools_str_dump_space_blocks(buffer, vspace, info);
+ ctx->indent_level--;
+ }
+ h5tools_render_element(stream, info, ctx, buffer, curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(buffer);
+ h5tools_str_append(buffer, "%s", h5tools_dump_header_format->virtualselectionblockend);
+ break;
+ case H5S_SEL_ALL: /* Entire extent selected */
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(buffer);
+ h5tools_str_append(buffer, "%s", VDS_ALL);
+ break;
+ default:
+ h5tools_str_append(buffer, "Unknown Selection");
+ }
+ h5tools_render_element(stream, info, ctx, buffer, curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+}
/*-------------------------------------------------------------------------
* Function: dump_fill_value
@@ -2925,19 +3017,18 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
*/
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s %s", STORAGE_LAYOUT, BEGIN);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- ctx->indent_level++;
-
- ctx->need_prefix = TRUE;
- h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
stl = H5Pget_layout(dcpl_id);
switch (stl) {
case H5D_CHUNKED:
+ ctx->indent_level++;
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s ", CHUNKED);
@@ -3000,8 +3091,13 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
h5tools_str_append(&buffer, "SIZE " HSIZE_T_FORMAT, storage_size);
}
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+ ctx->indent_level--;
break;
case H5D_COMPACT:
+ ctx->indent_level++;
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s", COMPACT);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
@@ -3012,6 +3108,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "SIZE " HSIZE_T_FORMAT, storage_size);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+ ctx->indent_level--;
break;
case H5D_CONTIGUOUS:
{
@@ -3023,7 +3120,11 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
* EXTERNAL_FILE
*-------------------------------------------------------------------------
*/
+ ctx->indent_level++;
if (next) {
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s", CONTIGUOUS);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
@@ -3059,6 +3160,9 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
else {
haddr_t ioffset;
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s", CONTIGUOUS);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
@@ -3078,6 +3182,107 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
h5tools_str_append(&buffer, "OFFSET "H5_PRINTF_HADDR_FMT, ioffset);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
}
+ ctx->indent_level--;
+ }
+ break;
+ case H5D_VIRTUAL:
+ {
+ size_t vmaps;
+
+ H5Pget_virtual_count(dcpl_id, &vmaps);
+
+ if (vmaps) {
+ size_t next;
+ ssize_t ssize_out;
+
+ ctx->indent_level++;
+ for (next = 0; next < (unsigned) vmaps; next++) {
+ hid_t virtual_vspace = H5Pget_virtual_vspace(dcpl_id, next);
+ hid_t virtual_srcspace = H5Pget_virtual_srcspace(dcpl_id, next);
+
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s %ld %s ", VDS_MAPPING, next, BEGIN);
+ h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+
+ ctx->indent_level++;
+
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s %s", VDS_VIRTUAL, BEGIN);
+ h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+
+ ctx->indent_level++;
+
+ h5tools_print_virtual_selection(virtual_vspace, dcpl_id, next, stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+
+ ctx->indent_level--;
+
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s", END);
+ h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s %s", VDS_SOURCE, BEGIN);
+ h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+
+ ctx->indent_level++;
+
+ ssize_out = H5Pget_virtual_filename(dcpl_id, next, NULL, 0);
+ H5Pget_virtual_filename(dcpl_id, next, name, sizeof(name));
+ ssize_out = H5Pget_virtual_dsetname(dcpl_id, next, NULL, 0);
+ H5Pget_virtual_dsetname(dcpl_id, next, dsetname, sizeof(dsetname));
+
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s %s", VDS_SRC_FILE, h5tools_dump_header_format->virtualfilenamebegin);
+ h5tools_str_append(&buffer, "%s", name);
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->virtualfilenameend);
+ h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s %s", VDS_SRC_DATASET, h5tools_dump_header_format->virtualdatasetnamebegin);
+ h5tools_str_append(&buffer, "%s", dsetname);
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->virtualdatasetnameend);
+ h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+
+ h5tools_print_virtual_selection(virtual_srcspace, dcpl_id, next, stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+
+ ctx->indent_level--;
+
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s", END);
+ h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+
+ ctx->indent_level--;
+
+ ctx->need_prefix = TRUE;
+ h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s", END);
+ h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
+ }
+ ctx->indent_level--;
+ }
}
break;
default:
@@ -3086,8 +3291,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0);
}/*switch*/
- ctx->indent_level--;
-
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
@@ -3102,7 +3305,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s %s", FILTERS, BEGIN);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3114,13 +3317,13 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
cd_nelmts = NELMTS(cd_values);
filtn = H5Pget_filter2(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts,
cd_values, sizeof(f_name), f_name, NULL);
-
- if (filtn < 0)
- continue; /* nothing to print for invalid filter */
+
+ if (filtn < 0)
+ continue; /* nothing to print for invalid filter */
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
switch(filtn) {
case H5Z_FILTER_DEFLATE:
@@ -3184,7 +3387,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
if(szip_options_mask & H5_SZIP_RAW_OPTION_MASK) {
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "HEADER %s", "RAW");
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3209,11 +3412,11 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
break;
default:
/* filters do not have to be available for showing registered filter info.
- see HDFFV-8346 for details. --xcao@hdfgroup.org
+ see HDFFV-8346 for details. --xcao@hdfgroup.org
if(H5Zfilter_avail(filtn))
h5tools_str_append(&buffer, "%s %s", "USER_REGISTERED_FILTER", BEGIN);
else
- */
+ */
h5tools_str_append(&buffer, "%s %s", "USER_DEFINED_FILTER", BEGIN);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3221,15 +3424,15 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "FILTER_ID %d", filtn);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
+
if(f_name[0] != '\0') {
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "COMMENT %s", f_name);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3237,7 +3440,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
if (cd_nelmts) {
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s %s ","PARAMS", BEGIN);
for (j=0; j<cd_nelmts; j++)
@@ -3249,7 +3452,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s",END);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3261,7 +3464,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "NONE");
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3270,7 +3473,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s",END);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3281,7 +3484,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
*/
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s %s", FILLVALUE, BEGIN);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3290,10 +3493,10 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "FILL_TIME ");
-
+
H5Pget_fill_time(dcpl_id, &ft);
switch(ft) {
case H5D_FILL_TIME_ALLOC:
@@ -3313,7 +3516,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s ", "VALUE ");
H5Pfill_value_defined(dcpl_id, &fvstatus);
@@ -3329,7 +3532,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s", END);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3340,7 +3543,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
*/
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "ALLOCATION_TIME %s", BEGIN);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3349,7 +3552,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
H5Pget_alloc_time(dcpl_id, &at);
switch(at) {
@@ -3372,7 +3575,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s", END);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3422,7 +3625,7 @@ h5tools_dump_comment(FILE *stream, const h5tool_format_t *info,
comment[cmt_bufsize] = '\0'; /* necessary because null char is not returned */
ctx->need_prefix = TRUE;
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "COMMENT \"%s\"", comment);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
@@ -3437,7 +3640,7 @@ h5tools_dump_comment(FILE *stream, const h5tool_format_t *info,
/*-------------------------------------------------------------------------
* Function: dump_attribute
*
- * Purpose: Dump the attribute.
+ * Purpose: Dump the attribute.
*
* Return: void
*
@@ -3446,7 +3649,7 @@ h5tools_dump_comment(FILE *stream, const h5tool_format_t *info,
*/
void
h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, const char *attr_name, hid_t attr_id,
+ h5tools_context_t *ctx, const char *attr_name, hid_t attr_id,
int display_index, int display_char)
{
h5tools_str_t buffer; /* string into which to render */
@@ -3465,7 +3668,7 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s \"%s\" %s",
h5tools_dump_header_format->attributebegin, attr_name,
@@ -3474,7 +3677,7 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info,
if(attr_id < 0) {
error_msg("unable to open attribute \"%s\"\n", attr_name);
- }
+ }
else {
hid_t type, space;
@@ -3501,7 +3704,7 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0);
-
+
h5tools_str_reset(&buffer);
if (HDstrlen(h5tools_dump_header_format->attributeblockend)) {
@@ -3557,36 +3760,36 @@ void
h5tools_print_packed_bits(h5tools_str_t *buffer, hid_t type)
{
int packed_bits_size = 0;
-
+
hid_t n_type = h5tools_get_native_type(type);
if(H5Tget_class(n_type)==H5T_INTEGER) {
if(H5Tequal(n_type, H5T_NATIVE_SCHAR) == TRUE) {
packed_bits_size = 8 * sizeof(char);
- }
+ }
else if(H5Tequal(n_type, H5T_NATIVE_UCHAR) == TRUE) {
packed_bits_size = 8 * sizeof(unsigned char);
- }
+ }
else if(H5Tequal(n_type, H5T_NATIVE_SHORT) == TRUE) {
packed_bits_size = 8 * sizeof(short);
- }
+ }
else if(H5Tequal(n_type, H5T_NATIVE_USHORT) == TRUE) {
packed_bits_size = 8 * sizeof(unsigned short);
- }
+ }
else if(H5Tequal(n_type, H5T_NATIVE_INT) == TRUE) {
packed_bits_size = 8 * sizeof(int);
- }
+ }
else if(H5Tequal(n_type, H5T_NATIVE_UINT) == TRUE) {
packed_bits_size = 8 * sizeof(unsigned int);
- }
+ }
else if(H5Tequal(n_type, H5T_NATIVE_LONG) == TRUE) {
packed_bits_size = 8 * sizeof(long);
- }
+ }
else if(H5Tequal(n_type, H5T_NATIVE_ULONG) == TRUE) {
packed_bits_size = 8 * sizeof(unsigned long);
- }
+ }
else if(H5Tequal(n_type, H5T_NATIVE_LLONG) == TRUE) {
packed_bits_size = 8 * sizeof(long long);
- }
+ }
else if(H5Tequal(n_type, H5T_NATIVE_ULLONG) == TRUE) {
packed_bits_size = 8 * sizeof(unsigned long long);
}
@@ -3627,25 +3830,25 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info,
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
if (info->line_ncols > 0)
ncols = info->line_ncols;
-
+
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->subsettingbegin, h5tools_dump_header_format->subsettingblockbegin);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
ctx->indent_level++;
-
+
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0);
-
+
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->startbegin, h5tools_dump_header_format->startblockbegin);
h5tools_print_dims(&buffer, sset->start.data, dims);
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->startend, h5tools_dump_header_format->startblockend);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
+
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0);
@@ -3654,7 +3857,7 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info,
h5tools_print_dims(&buffer, sset->stride.data, dims);
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->strideend, h5tools_dump_header_format->strideblockend);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
+
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0);
@@ -3668,7 +3871,7 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info,
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->countend, h5tools_dump_header_format->countblockend);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
+
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0);
@@ -3682,7 +3885,7 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info,
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->blockend, h5tools_dump_header_format->blockblockend);
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
+
ctx->indent_level--;
h5tools_str_close(&buffer);
@@ -3699,7 +3902,7 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info,
*/
void
h5tools_dump_data(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, hid_t obj_id, int obj_data, struct subset_t *sset,
+ h5tools_context_t *ctx, hid_t obj_id, int obj_data, struct subset_t *sset,
int display_index, int display_char)
{
H5S_class_t space_type;
@@ -3762,10 +3965,10 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info,
h5tools_dump_subsetting_header(stream, &outputformat, ctx, sset, H5Sget_simple_extent_ndims(f_space));
H5Sclose(f_space);
-
+
ctx->indent_level++;
}
-
+
ctx->need_prefix = TRUE;
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->databegin, h5tools_dump_header_format->datablockbegin);
@@ -3791,7 +3994,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info,
datactx.indent_level++;
datactx.need_prefix = TRUE;
h5tools_simple_prefix(stream, info, &datactx, (hsize_t)0, 0);
-
+
string_dataformat = *info;
string_dataformat.idx_fmt = "\"";
string_dataformat.line_multi_new = 1;
@@ -3859,7 +4062,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info,
datactx.indent_level++;
datactx.need_prefix = TRUE;
h5tools_simple_prefix(stream, info, &datactx, (hsize_t)0, 0);
-
+
string_dataformat = *info;
string_dataformat.idx_fmt = "\"";
string_dataformat.line_multi_new = 1;
@@ -3886,7 +4089,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info,
H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf);
HDfree(buf);
- }
+ }
else
status = SUCCEED;
@@ -3916,10 +4119,10 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info,
if (sset && obj_data) {
ctx->indent_level--;
-
+
ctx->need_prefix = TRUE;
h5tools_simple_prefix(stream, &outputformat, ctx, (hsize_t)0, 0);
-
+
h5tools_str_reset(&buffer);
if(HDstrlen(h5tools_dump_header_format->subsettingblockend)) {
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->subsettingblockend);
diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c
index b61ed34..249708e 100644
--- a/tools/lib/h5tools_str.c
+++ b/tools/lib/h5tools_str.c
@@ -413,9 +413,9 @@ h5tools_str_region_prefix(h5tools_str_t *str, const h5tool_format_t *info,
}
/*-------------------------------------------------------------------------
- * Function: h5tools_str_dump_region_blocks
+ * Function: h5tools_str_dump_space_slabs
*
- * Purpose: Prints information about a dataspace region by appending
+ * Purpose: Prints information about a dataspace selection by appending
* the information to the specified string.
*
* Return: none
@@ -426,19 +426,85 @@ h5tools_str_region_prefix(h5tools_str_t *str, const h5tool_format_t *info,
*-------------------------------------------------------------------------
*/
void
-h5tools_str_dump_region_blocks(h5tools_str_t *str, hid_t region,
+h5tools_str_dump_space_slabs(h5tools_str_t *str, hid_t rspace,
+ const h5tool_format_t *info, h5tools_context_t *ctx)
+{
+ hsize_t start[H5S_MAX_RANK];
+ hsize_t stride[H5S_MAX_RANK];
+ hsize_t count[H5S_MAX_RANK];
+ hsize_t block[H5S_MAX_RANK];
+ int j;
+ int ndims = H5Sget_simple_extent_ndims(rspace);
+
+ H5Sget_regular_hyperslab(rspace, start, stride, count, block);
+
+ /* Print hyperslab information */
+
+ /* Start coordinates */
+ h5tools_str_append(str, "%s%s ", info->line_indent, START);
+ for (j = 0; j < ndims; j++)
+ h5tools_str_append(str, "%s" HSIZE_T_FORMAT, j ? "," : "(", start[j]);
+ h5tools_str_append(str, ")");
+ h5tools_str_append(str, "%s", "\n");
+ h5tools_str_indent(str, info, ctx);
+
+ /* Stride coordinates */
+ h5tools_str_append(str, "%s ", STRIDE);
+ for (j = 0; j < ndims; j++)
+ h5tools_str_append(str, "%s" HSIZE_T_FORMAT, j ? "," : "(", stride[j]);
+ h5tools_str_append(str, ")");
+ h5tools_str_append(str, "%s", "\n");
+ h5tools_str_indent(str, info, ctx);
+
+ /* Count coordinates */
+ h5tools_str_append(str, "%s ", COUNT);
+ for (j = 0; j < ndims; j++) {
+ if(count[j] == H5S_UNLIMITED)
+ h5tools_str_append(str, "%s%s", j ? "," : "(","H5S_UNLIMITED");
+ else
+ h5tools_str_append(str, "%s" HSIZE_T_FORMAT, j ? "," : "(", count[j]);
+ }
+ h5tools_str_append(str, ")");
+ h5tools_str_append(str, "%s", "\n");
+ h5tools_str_indent(str, info, ctx);
+
+ /* Block coordinates */
+ h5tools_str_append(str, "%s ", BLOCK);
+ for (j = 0; j < ndims; j++) {
+ if(block[j] == H5S_UNLIMITED)
+ h5tools_str_append(str, "%s%s", j ? "," : "(","H5S_UNLIMITED");
+ else
+ h5tools_str_append(str, "%s" HSIZE_T_FORMAT, j ? "," : "(", block[j]);
+ }
+ h5tools_str_append(str, ")");
+}
+
+/*-------------------------------------------------------------------------
+ * Function: h5tools_str_dump_space_blocks
+ *
+ * Purpose: Prints information about a dataspace selection by appending
+ * the information to the specified string.
+ *
+ * Return: none
+ *
+ * In/Out:
+ * h5tools_str_t *str
+ *-------------------------------------------------------------------------
+ */
+void
+h5tools_str_dump_space_blocks(h5tools_str_t *str, hid_t rspace,
const h5tool_format_t *info)
{
hssize_t nblocks;
hsize_t alloc_size;
hsize_t *ptdata;
- int ndims = H5Sget_simple_extent_ndims(region);
+ int ndims = H5Sget_simple_extent_ndims(rspace);
/*
- * This function fails if the region does not have blocks.
+ * This function fails if the rspace does not have blocks.
*/
H5E_BEGIN_TRY {
- nblocks = H5Sget_select_hyper_nblocks(region);
+ nblocks = H5Sget_select_hyper_nblocks(rspace);
} H5E_END_TRY;
/* Print block information */
@@ -449,13 +515,12 @@ h5tools_str_dump_region_blocks(h5tools_str_t *str, hid_t region,
HDassert(alloc_size == (hsize_t) ((size_t) alloc_size)); /*check for overflow*/
ptdata = (hsize_t *)HDmalloc((size_t) alloc_size);
H5_CHECK_OVERFLOW(nblocks, hssize_t, hsize_t);
- H5Sget_select_hyper_blocklist(region, (hsize_t)0, (hsize_t)nblocks, ptdata);
+ H5Sget_select_hyper_blocklist(rspace, (hsize_t)0, (hsize_t)nblocks, ptdata);
for (i = 0; i < nblocks; i++) {
int j;
- h5tools_str_append(str, info->dset_blockformat_pre, i ? "," OPTIONAL_LINE_BREAK " " : "",
- (unsigned long)i);
+ h5tools_str_append(str, info->dset_blockformat_pre, i ? "," OPTIONAL_LINE_BREAK " " : "", (unsigned long)i);
/* Start coordinates and opposite corner */
for (j = 0; j < ndims; j++)
@@ -474,32 +539,31 @@ h5tools_str_dump_region_blocks(h5tools_str_t *str, hid_t region,
}
/*-------------------------------------------------------------------------
- * Function: h5tools_str_dump_region_points
+ * Function: h5tools_str_dump_space_points
*
- * Purpose: Prints information about a dataspace region by appending
+ * Purpose: Prints information about a dataspace selection by appending
* the information to the specified string.
*
* Return: none
*
* In/Out:
- * h5tools_context_t *ctx
* h5tools_str_t *str
*-------------------------------------------------------------------------
*/
void
-h5tools_str_dump_region_points(h5tools_str_t *str, hid_t region,
+h5tools_str_dump_space_points(h5tools_str_t *str, hid_t rspace,
const h5tool_format_t *info)
{
hssize_t npoints;
hsize_t alloc_size;
hsize_t *ptdata;
- int ndims = H5Sget_simple_extent_ndims(region);
+ int ndims = H5Sget_simple_extent_ndims(rspace);
/*
- * This function fails if the region does not have points.
+ * This function fails if the rspace does not have points.
*/
H5E_BEGIN_TRY {
- npoints = H5Sget_select_elem_npoints(region);
+ npoints = H5Sget_select_elem_npoints(rspace);
} H5E_END_TRY;
/* Print point information */
@@ -510,7 +574,7 @@ h5tools_str_dump_region_points(h5tools_str_t *str, hid_t region,
HDassert(alloc_size == (hsize_t) ((size_t) alloc_size)); /*check for overflow*/
ptdata = (hsize_t *)HDmalloc((size_t) alloc_size);
H5_CHECK_OVERFLOW(npoints, hssize_t, hsize_t);
- H5Sget_select_elem_pointlist(region, (hsize_t)0, (hsize_t)npoints, ptdata);
+ H5Sget_select_elem_pointlist(rspace, (hsize_t)0, (hsize_t)npoints, ptdata);
for (i = 0; i < npoints; i++) {
int j;
@@ -1234,9 +1298,9 @@ h5tools_str_sprint_region(h5tools_str_t *str, const h5tool_format_t *info,
region_type = H5Sget_select_type(region);
if(region_type==H5S_SEL_POINTS)
- h5tools_str_dump_region_points(str, region, info);
+ h5tools_str_dump_space_points(str, region, info);
else
- h5tools_str_dump_region_blocks(str, region, info);
+ h5tools_str_dump_space_blocks(str, region, info);
h5tools_str_append(str, "}");
@@ -1382,23 +1446,23 @@ h5tools_str_is_zero(const void *_mem, size_t size)
char *
h5tools_str_replace ( const char *string, const char *substr, const char *replacement )
{
- char *tok = NULL;
- char *newstr = NULL;
- char *oldstr = NULL;
- char *head = NULL;
-
- if ( substr == NULL || replacement == NULL )
- return HDstrdup (string);
-
- newstr = HDstrdup (string);
- head = newstr;
- while ( (tok = HDstrstr ( head, substr ))){
- oldstr = newstr;
- newstr = HDmalloc ( HDstrlen ( oldstr ) - HDstrlen ( substr ) + HDstrlen ( replacement ) + 1 );
+ char *tok = NULL;
+ char *newstr = NULL;
+ char *oldstr = NULL;
+ char *head = NULL;
+
+ if ( substr == NULL || replacement == NULL )
+ return HDstrdup (string);
+
+ newstr = HDstrdup (string);
+ head = newstr;
+ while ( (tok = HDstrstr ( head, substr ))){
+ oldstr = newstr;
+ newstr = HDmalloc ( HDstrlen ( oldstr ) - HDstrlen ( substr ) + HDstrlen ( replacement ) + 1 );
if ( newstr == NULL ){
- HDfree (oldstr);
- return NULL;
+ HDfree (oldstr);
+ return NULL;
}
HDmemcpy ( newstr, oldstr, tok - oldstr );
HDmemcpy ( newstr + (tok - oldstr), replacement, HDstrlen ( replacement ) );
diff --git a/tools/lib/h5tools_str.h b/tools/lib/h5tools_str.h
index 38697c6..6173b89 100644
--- a/tools/lib/h5tools_str.h
+++ b/tools/lib/h5tools_str.h
@@ -40,8 +40,9 @@ H5TOOLS_DLL char *h5tools_str_prefix(h5tools_str_t *str, const h5tool_format_
H5TOOLS_DLL char *h5tools_str_region_prefix(h5tools_str_t *str, const h5tool_format_t *info,
hsize_t elmtno, hsize_t *ptdata, unsigned ndims,
hsize_t max_idx[], h5tools_context_t *ctx);
-H5TOOLS_DLL void h5tools_str_dump_region_blocks(h5tools_str_t *, hid_t, const h5tool_format_t *);
-H5TOOLS_DLL void h5tools_str_dump_region_points(h5tools_str_t *, hid_t, const h5tool_format_t *);
+H5TOOLS_DLL void h5tools_str_dump_space_slabs(h5tools_str_t *, hid_t, const h5tool_format_t *, h5tools_context_t *ctx);
+H5TOOLS_DLL void h5tools_str_dump_space_blocks(h5tools_str_t *, hid_t, const h5tool_format_t *);
+H5TOOLS_DLL void h5tools_str_dump_space_points(h5tools_str_t *, hid_t, const h5tool_format_t *);
H5TOOLS_DLL void h5tools_str_sprint_region(h5tools_str_t *str, const h5tool_format_t *info, hid_t container,
void *vp);
H5TOOLS_DLL char *h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info,
diff --git a/tools/misc/CMakeLists.txt b/tools/misc/CMakeLists.txt
index d53cdc8..088dbdf 100644
--- a/tools/misc/CMakeLists.txt
+++ b/tools/misc/CMakeLists.txt
@@ -52,6 +52,9 @@ if (BUILD_TESTING)
target_link_libraries (h5repart_gentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET})
set_target_properties (h5repart_gentest PROPERTIES FOLDER generator/tools)
#add_test (NAME h5repart_gentest COMMAND $<TARGET_FILE:h5repart_gentest>)
+
+ add_subdirectory (${HDF5_TOOLS_MISC_SOURCE_DIR}/vds)
+
endif (HDF5_BUILD_GENERATORS)
add_executable (h5repart_test ${HDF5_TOOLS_MISC_SOURCE_DIR}/repart_test.c)
diff --git a/tools/misc/Makefile.am b/tools/misc/Makefile.am
index 882f8f2..fdfe8f7 100644
--- a/tools/misc/Makefile.am
+++ b/tools/misc/Makefile.am
@@ -20,10 +20,12 @@
include $(top_srcdir)/config/commence.am
+SUBDIRS=vds
+
# Include src directory
AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
-#test script and program
+#test scripts and programs
TEST_PROG=h5repart_gentest talign
TEST_SCRIPT=testh5repart.sh testh5mkgrp.sh
diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in
index 3e6b688..e114aee 100644
--- a/tools/misc/Makefile.in
+++ b/tools/misc/Makefile.in
@@ -222,11 +222,27 @@ SOURCES = h5debug.c h5mkgrp.c h5repart.c h5repart_gentest.c \
repart_test.c talign.c
DIST_SOURCES = h5debug.c h5mkgrp.c h5repart.c h5repart_gentest.c \
repart_test.c talign.c
+RECURSIVE_TARGETS = all-recursive check-recursive cscopelist-recursive \
+ ctags-recursive dvi-recursive html-recursive info-recursive \
+ install-data-recursive install-dvi-recursive \
+ install-exec-recursive install-html-recursive \
+ install-info-recursive install-pdf-recursive \
+ install-ps-recursive install-recursive installcheck-recursive \
+ installdirs-recursive pdf-recursive ps-recursive \
+ tags-recursive uninstall-recursive
am__can_run_installinfo = \
case $$AM_UPDATE_INFO_DIR in \
n|no|NO) false;; \
*) (install-info --version) >/dev/null 2>&1;; \
esac
+RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \
+ distclean-recursive maintainer-clean-recursive
+am__recursive_targets = \
+ $(RECURSIVE_TARGETS) \
+ $(RECURSIVE_CLEAN_TARGETS) \
+ $(am__extra_recursive_targets)
+AM_RECURSIVE_TARGETS = $(am__recursive_targets:-recursive=) TAGS CTAGS \
+ check recheck distdir
am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) $(LISP)
# Read a list of newline-separated strings from the standard input,
# and print each of them once, without duplicates. Input order is
@@ -402,7 +418,6 @@ am__set_TESTS_bases = \
bases=`for i in $$bases; do echo $$i; done | sed 's/\.log$$//'`; \
bases=`echo $$bases`
RECHECK_LOGS = $(TEST_LOGS)
-AM_RECURSIVE_TARGETS = check recheck
TEST_SUITE_LOG = test-suite.log
LOG_DRIVER = $(SHELL) $(top_srcdir)/bin/test-driver
LOG_COMPILE = $(LOG_COMPILER) $(AM_LOG_FLAGS) $(LOG_FLAGS)
@@ -421,7 +436,33 @@ am__test_logs2 = $(am__test_logs1:@EXEEXT@.log=.log)
TEST_LOGS = $(am__test_logs2:.sh.log=.log)
SH_LOG_DRIVER = $(SHELL) $(top_srcdir)/bin/test-driver
SH_LOG_COMPILE = $(SH_LOG_COMPILER) $(AM_SH_LOG_FLAGS) $(SH_LOG_FLAGS)
+DIST_SUBDIRS = $(SUBDIRS)
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+am__relativize = \
+ dir0=`pwd`; \
+ sed_first='s,^\([^/]*\)/.*$$,\1,'; \
+ sed_rest='s,^[^/]*/*,,'; \
+ sed_last='s,^.*/\([^/]*\)$$,\1,'; \
+ sed_butlast='s,/*[^/]*$$,,'; \
+ while test -n "$$dir1"; do \
+ first=`echo "$$dir1" | sed -e "$$sed_first"`; \
+ if test "$$first" != "."; then \
+ if test "$$first" = ".."; then \
+ dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
+ dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
+ else \
+ first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
+ if test "$$first2" = "$$first"; then \
+ dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
+ else \
+ dir2="../$$dir2"; \
+ fi; \
+ dir0="$$dir0"/"$$first"; \
+ fi; \
+ fi; \
+ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
+ done; \
+ reldir="$$dir2"
ACLOCAL = @ACLOCAL@
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
@@ -712,8 +753,9 @@ TRACE = perl $(top_srcdir)/bin/trace
# and scd_family*.h5 were created by setting the HDF5_NOCLEANUP variable.
CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 *.h5 \
../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5
+SUBDIRS = vds
-#test script and program
+#test scripts and programs
TEST_PROG = h5repart_gentest talign
TEST_SCRIPT = testh5repart.sh testh5mkgrp.sh
check_SCRIPTS = $(TEST_SCRIPT)
@@ -758,7 +800,7 @@ TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_)
-all: all-am
+all: all-recursive
.SUFFIXES:
.SUFFIXES: .c .lo .log .o .obj .sh .sh$(EXEEXT) .trs
@@ -957,14 +999,61 @@ mostlyclean-libtool:
clean-libtool:
-rm -rf .libs _libs
+# This directory's subdirectories are mostly independent; you can cd
+# into them and run 'make' without going through this Makefile.
+# To change the values of 'make' variables: instead of editing Makefiles,
+# (1) if the variable is set in 'config.status', edit 'config.status'
+# (which will cause the Makefiles to be regenerated when you run 'make');
+# (2) otherwise, pass the desired values on the 'make' command line.
+$(am__recursive_targets):
+ @fail=; \
+ if $(am__make_keepgoing); then \
+ failcom='fail=yes'; \
+ else \
+ failcom='exit 1'; \
+ fi; \
+ dot_seen=no; \
+ target=`echo $@ | sed s/-recursive//`; \
+ case "$@" in \
+ distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
+ *) list='$(SUBDIRS)' ;; \
+ esac; \
+ for subdir in $$list; do \
+ echo "Making $$target in $$subdir"; \
+ if test "$$subdir" = "."; then \
+ dot_seen=yes; \
+ local_target="$$target-am"; \
+ else \
+ local_target="$$target"; \
+ fi; \
+ ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+ || eval $$failcom; \
+ done; \
+ if test "$$dot_seen" = "no"; then \
+ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
+ fi; test -z "$$fail"
+
ID: $(am__tagged_files)
$(am__define_uniq_tagged_files); mkid -fID $$unique
-tags: tags-am
+tags: tags-recursive
TAGS: tags
tags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
set x; \
here=`pwd`; \
+ if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
+ include_option=--etags-include; \
+ empty_fix=.; \
+ else \
+ include_option=--include; \
+ empty_fix=; \
+ fi; \
+ list='$(SUBDIRS)'; for subdir in $$list; do \
+ if test "$$subdir" = .; then :; else \
+ test ! -f $$subdir/TAGS || \
+ set "$$@" "$$include_option=$$here/$$subdir/TAGS"; \
+ fi; \
+ done; \
$(am__define_uniq_tagged_files); \
shift; \
if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
@@ -977,7 +1066,7 @@ tags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
$$unique; \
fi; \
fi
-ctags: ctags-am
+ctags: ctags-recursive
CTAGS: ctags
ctags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
@@ -990,7 +1079,7 @@ GTAGS:
here=`$(am__cd) $(top_builddir) && pwd` \
&& $(am__cd) $(top_srcdir) \
&& gtags -i $(GTAGS_ARGS) "$$here"
-cscopelist: cscopelist-am
+cscopelist: cscopelist-recursive
cscopelist-am: $(am__tagged_files)
list='$(am__tagged_files)'; \
@@ -1198,24 +1287,50 @@ distdir: $(DISTFILES)
|| exit 1; \
fi; \
done
+ @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+ if test "$$subdir" = .; then :; else \
+ $(am__make_dryrun) \
+ || test -d "$(distdir)/$$subdir" \
+ || $(MKDIR_P) "$(distdir)/$$subdir" \
+ || exit 1; \
+ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \
+ $(am__relativize); \
+ new_distdir=$$reldir; \
+ dir1=$$subdir; dir2="$(top_distdir)"; \
+ $(am__relativize); \
+ new_top_distdir=$$reldir; \
+ echo " (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) top_distdir="$$new_top_distdir" distdir="$$new_distdir" \\"; \
+ echo " am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)"; \
+ ($(am__cd) $$subdir && \
+ $(MAKE) $(AM_MAKEFLAGS) \
+ top_distdir="$$new_top_distdir" \
+ distdir="$$new_distdir" \
+ am__remove_distdir=: \
+ am__skip_length_check=: \
+ am__skip_mode_fix=: \
+ distdir) \
+ || exit 1; \
+ fi; \
+ done
check-am: all-am
$(MAKE) $(AM_MAKEFLAGS) $(check_PROGRAMS) $(check_SCRIPTS)
$(MAKE) $(AM_MAKEFLAGS) check-TESTS
-check: check-am
+check: check-recursive
all-am: Makefile $(PROGRAMS) $(SCRIPTS) all-local
-installdirs:
+installdirs: installdirs-recursive
+installdirs-am:
for dir in "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)"; do \
test -z "$$dir" || $(MKDIR_P) "$$dir"; \
done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
+install: install-recursive
+install-exec: install-exec-recursive
+install-data: install-data-recursive
+uninstall: uninstall-recursive
install-am: all-am
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-installcheck: installcheck-am
+installcheck: installcheck-recursive
install-strip:
if test -z '$(STRIP)'; then \
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
@@ -1242,85 +1357,85 @@ distclean-generic:
maintainer-clean-generic:
@echo "This command is intended for maintainers to use"
@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
+clean: clean-recursive
clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
clean-libtool mostlyclean-am
-distclean: distclean-am
+distclean: distclean-recursive
-rm -rf ./$(DEPDIR)
-rm -f Makefile
distclean-am: clean-am distclean-compile distclean-generic \
distclean-tags
-dvi: dvi-am
+dvi: dvi-recursive
dvi-am:
-html: html-am
+html: html-recursive
html-am:
-info: info-am
+info: info-recursive
info-am:
install-data-am:
-install-dvi: install-dvi-am
+install-dvi: install-dvi-recursive
install-dvi-am:
install-exec-am: install-binPROGRAMS install-binSCRIPTS \
install-exec-local
-install-html: install-html-am
+install-html: install-html-recursive
install-html-am:
-install-info: install-info-am
+install-info: install-info-recursive
install-info-am:
install-man:
-install-pdf: install-pdf-am
+install-pdf: install-pdf-recursive
install-pdf-am:
-install-ps: install-ps-am
+install-ps: install-ps-recursive
install-ps-am:
installcheck-am:
-maintainer-clean: maintainer-clean-am
+maintainer-clean: maintainer-clean-recursive
-rm -rf ./$(DEPDIR)
-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic
-mostlyclean: mostlyclean-am
+mostlyclean: mostlyclean-recursive
mostlyclean-am: mostlyclean-compile mostlyclean-generic \
mostlyclean-libtool mostlyclean-local
-pdf: pdf-am
+pdf: pdf-recursive
pdf-am:
-ps: ps-am
+ps: ps-recursive
ps-am:
uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS \
uninstall-local
-.MAKE: check-am install-am install-strip
+.MAKE: $(am__recursive_targets) check-am install-am install-strip
-.PHONY: CTAGS GTAGS TAGS all all-am all-local check check-TESTS \
- check-am clean clean-binPROGRAMS clean-checkPROGRAMS \
- clean-generic clean-libtool cscopelist-am ctags ctags-am \
- distclean distclean-compile distclean-generic \
+.PHONY: $(am__recursive_targets) CTAGS GTAGS TAGS all all-am all-local \
+ check check-TESTS check-am clean clean-binPROGRAMS \
+ clean-checkPROGRAMS clean-generic clean-libtool cscopelist-am \
+ ctags ctags-am distclean distclean-compile distclean-generic \
distclean-libtool distclean-tags distdir dvi dvi-am html \
html-am info info-am install install-am install-binPROGRAMS \
install-binSCRIPTS install-data install-data-am install-dvi \
@@ -1328,10 +1443,10 @@ uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS \
install-html install-html-am install-info install-info-am \
install-man install-pdf install-pdf-am install-ps \
install-ps-am install-strip installcheck installcheck-am \
- installdirs maintainer-clean maintainer-clean-generic \
- mostlyclean mostlyclean-compile mostlyclean-generic \
- mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am \
- recheck tags tags-am uninstall uninstall-am \
+ installdirs installdirs-am maintainer-clean \
+ maintainer-clean-generic mostlyclean mostlyclean-compile \
+ mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \
+ pdf-am ps ps-am recheck tags tags-am uninstall uninstall-am \
uninstall-binPROGRAMS uninstall-binSCRIPTS uninstall-local
diff --git a/tools/misc/vds/CMakeLists.txt b/tools/misc/vds/CMakeLists.txt
new file mode 100644
index 0000000..dcf883c
--- /dev/null
+++ b/tools/misc/vds/CMakeLists.txt
@@ -0,0 +1,28 @@
+cmake_minimum_required (VERSION 3.1.0)
+PROJECT (HDF5_TOOLS_MISC_VDS)
+
+#-----------------------------------------------------------------------------
+# Setup include Directories
+#-----------------------------------------------------------------------------
+INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib)
+
+MACRO (ADD_H5_GENERATOR genfile)
+ add_executable (${genfile} ${HDF5_TOOLS_MISC_VDS_SOURCE_DIR}/${genfile}.c)
+ TARGET_NAMING (${genfile} STATIC)
+ TARGET_C_PROPERTIES (${genfile} STATIC " " " ")
+ target_link_libraries (${genfile} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET})
+ set_target_properties (${genfile} PROPERTIES FOLDER generator/tools)
+ENDMACRO (ADD_H5_GENERATOR genfile)
+
+# generator executables
+set (H5_GENERATORS
+ UC_1_one_dim_gen
+ UC_2_two_dims_gen
+ UC_3_gaps_gen
+ UC_4_printf_gen
+ UC_5_stride_gen
+)
+
+foreach (gen ${H5_GENERATORS})
+ ADD_H5_GENERATOR (${gen})
+endforeach (gen ${H5_GENERATORS})
diff --git a/tools/misc/vds/Makefile.am b/tools/misc/vds/Makefile.am
new file mode 100644
index 0000000..f1ef80c
--- /dev/null
+++ b/tools/misc/vds/Makefile.am
@@ -0,0 +1,38 @@
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src directory
+AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+#test scripts and programs
+TEST_PROG=UC_1_one_dim_gen UC_2_two_dims_gen UC_3_gaps_gen UC_4_printf_gen \
+ UC_5_stride_gen
+
+check_PROGRAMS=$(TEST_PROG)
+
+# Temporary files.
+CHECK_CLEANFILES+=*.h5
+
+# All programs rely on hdf5 library and h5tools library
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/misc/vds/Makefile.in b/tools/misc/vds/Makefile.in
new file mode 100644
index 0000000..e9c73ad
--- /dev/null
+++ b/tools/misc/vds/Makefile.in
@@ -0,0 +1,1404 @@
+# Makefile.in generated by automake 1.14.1 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994-2013 Free Software Foundation, Inc.
+
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+# HDF5 Library Makefile(.in)
+#
+VPATH = @srcdir@
+am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
+am__make_running_with_option = \
+ case $${target_option-} in \
+ ?) ;; \
+ *) echo "am__make_running_with_option: internal error: invalid" \
+ "target option '$${target_option-}' specified" >&2; \
+ exit 1;; \
+ esac; \
+ has_opt=no; \
+ sane_makeflags=$$MAKEFLAGS; \
+ if $(am__is_gnu_make); then \
+ sane_makeflags=$$MFLAGS; \
+ else \
+ case $$MAKEFLAGS in \
+ *\\[\ \ ]*) \
+ bs=\\; \
+ sane_makeflags=`printf '%s\n' "$$MAKEFLAGS" \
+ | sed "s/$$bs$$bs[$$bs $$bs ]*//g"`;; \
+ esac; \
+ fi; \
+ skip_next=no; \
+ strip_trailopt () \
+ { \
+ flg=`printf '%s\n' "$$flg" | sed "s/$$1.*$$//"`; \
+ }; \
+ for flg in $$sane_makeflags; do \
+ test $$skip_next = yes && { skip_next=no; continue; }; \
+ case $$flg in \
+ *=*|--*) continue;; \
+ -*I) strip_trailopt 'I'; skip_next=yes;; \
+ -*I?*) strip_trailopt 'I';; \
+ -*O) strip_trailopt 'O'; skip_next=yes;; \
+ -*O?*) strip_trailopt 'O';; \
+ -*l) strip_trailopt 'l'; skip_next=yes;; \
+ -*l?*) strip_trailopt 'l';; \
+ -[dEDm]) skip_next=yes;; \
+ -[JT]) skip_next=yes;; \
+ esac; \
+ case $$flg in \
+ *$$target_option*) has_opt=yes; break;; \
+ esac; \
+ done; \
+ test $$has_opt = yes
+am__make_dryrun = (target_option=n; $(am__make_running_with_option))
+am__make_keepgoing = (target_option=k; $(am__make_running_with_option))
+pkgdatadir = $(datadir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkglibexecdir = $(libexecdir)/@PACKAGE@
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+DIST_COMMON = $(top_srcdir)/config/commence.am \
+ $(top_srcdir)/config/conclude.am $(srcdir)/Makefile.in \
+ $(srcdir)/Makefile.am $(top_srcdir)/bin/mkinstalldirs \
+ $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/test-driver
+check_PROGRAMS = $(am__EXEEXT_1)
+TESTS = $(am__EXEEXT_1)
+subdir = tools/misc/vds
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_cxx.m4 \
+ $(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+ $(ACLOCAL_M4)
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES =
+CONFIG_CLEAN_VPATH_FILES =
+am__EXEEXT_1 = UC_1_one_dim_gen$(EXEEXT) UC_2_two_dims_gen$(EXEEXT) \
+ UC_3_gaps_gen$(EXEEXT) UC_4_printf_gen$(EXEEXT) \
+ UC_5_stride_gen$(EXEEXT)
+UC_1_one_dim_gen_SOURCES = UC_1_one_dim_gen.c
+UC_1_one_dim_gen_OBJECTS = UC_1_one_dim_gen.$(OBJEXT)
+UC_1_one_dim_gen_LDADD = $(LDADD)
+UC_1_one_dim_gen_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
+AM_V_lt = $(am__v_lt_@AM_V@)
+am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
+am__v_lt_0 = --silent
+am__v_lt_1 =
+UC_2_two_dims_gen_SOURCES = UC_2_two_dims_gen.c
+UC_2_two_dims_gen_OBJECTS = UC_2_two_dims_gen.$(OBJEXT)
+UC_2_two_dims_gen_LDADD = $(LDADD)
+UC_2_two_dims_gen_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
+UC_3_gaps_gen_SOURCES = UC_3_gaps_gen.c
+UC_3_gaps_gen_OBJECTS = UC_3_gaps_gen.$(OBJEXT)
+UC_3_gaps_gen_LDADD = $(LDADD)
+UC_3_gaps_gen_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
+UC_4_printf_gen_SOURCES = UC_4_printf_gen.c
+UC_4_printf_gen_OBJECTS = UC_4_printf_gen.$(OBJEXT)
+UC_4_printf_gen_LDADD = $(LDADD)
+UC_4_printf_gen_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
+UC_5_stride_gen_SOURCES = UC_5_stride_gen.c
+UC_5_stride_gen_OBJECTS = UC_5_stride_gen.$(OBJEXT)
+UC_5_stride_gen_LDADD = $(LDADD)
+UC_5_stride_gen_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
+AM_V_P = $(am__v_P_@AM_V@)
+am__v_P_ = $(am__v_P_@AM_DEFAULT_V@)
+am__v_P_0 = false
+am__v_P_1 = :
+AM_V_GEN = $(am__v_GEN_@AM_V@)
+am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@)
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+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+ mostlyclean-libtool mostlyclean-local
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am:
+
+.MAKE: check-am install-am install-strip
+
+.PHONY: CTAGS GTAGS TAGS all all-am all-local check check-TESTS \
+ check-am clean clean-checkPROGRAMS clean-generic clean-libtool \
+ cscopelist-am ctags ctags-am distclean distclean-compile \
+ distclean-generic distclean-libtool distclean-tags distdir dvi \
+ dvi-am html html-am info info-am install install-am \
+ install-data install-data-am install-dvi install-dvi-am \
+ install-exec install-exec-am install-html install-html-am \
+ install-info install-info-am install-man install-pdf \
+ install-pdf-am install-ps install-ps-am install-strip \
+ installcheck installcheck-am installdirs maintainer-clean \
+ maintainer-clean-generic mostlyclean mostlyclean-compile \
+ mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \
+ pdf-am ps ps-am recheck tags tags-am uninstall uninstall-am
+
+
+# List all build rules defined by HDF5 Makefiles as "PHONY" targets here.
+# This tells the Makefiles that these targets are not files to be built but
+# commands that should be executed even if a file with the same name already
+# exists.
+.PHONY: build-check-clean build-check-p build-check-s build-lib build-progs \
+ build-tests check-clean check-install check-p check-s check-vfd \
+ install-doc lib progs tests uninstall-doc _exec_check-s _test help
+
+help:
+ @$(top_srcdir)/bin/makehelp
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
+
+# General rule for recursive building targets.
+# BUILT_SOURCES contain targets that need to be built before anything else
+# in the directory (e.g., for Fortran type detection)
+lib progs tests check-s check-p :: $(BUILT_SOURCES)
+ @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
+ @for d in X $(SUBDIRS); do \
+ if test $$d != X && test $$d != .; then \
+ (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \
+ fi; \
+ done
+
+# General rule for recursive cleaning targets. Like the rule above,
+# but doesn't require building BUILT_SOURCES.
+check-clean ::
+ @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
+ @for d in X $(SUBDIRS); do \
+ if test $$d != X && test $$d != .; then \
+ (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \
+ fi; \
+ done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+# UPDATE: docs no longer reside in this build tree, so this target
+# is depreciated.
+install-doc uninstall-doc:
+ @echo "Nothing to be done."
+
+# clean up files generated by tests so they can be re-run.
+build-check-clean:
+ $(RM) -rf $(CHECK_CLEANFILES)
+
+# run check-clean whenever mostlyclean is run
+mostlyclean-local: build-check-clean
+
+# check-install is just a synonym for installcheck
+check-install: installcheck
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in chk_TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test:
+ @$(MAKE) build-check-s
+ @$(MAKE) build-check-p
+
+# Actual execution of check-s.
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
+ @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \
+ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+ fi
+ @$(MAKE) $(AM_MAKEFLAGS) _exec_check-s
+ @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \
+ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+ fi
+
+_exec_check-s: $(TEST_PROG_CHKEXE) $(TEST_SCRIPT_CHKSH)
+
+# The dummy.chkexe here prevents the target from being
+# empty if there are no tests in the current directory.
+# $${log} is the log file.
+# $${tname} is the name of test.
+$(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_:
+ @if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummy.chkexe_"; then \
+ tname=$(@:.chkexe_=)$(EXEEXT);\
+ log=$(@:.chkexe_=.chklog); \
+ echo "============================"; \
+ if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \
+ echo "No need to test $${tname} again."; \
+ else \
+ echo "============================" > $${log}; \
+ if test "X$(FORTRAN_API)" = "Xyes"; then \
+ echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
+ echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ elif test "X$(CXX_API)" = "Xyes"; then \
+ echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
+ echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\
+ else \
+ echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
+ echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ fi; \
+ echo "============================" >> $${log}; \
+ srcdir="$(srcdir)" \
+ $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \
+ && touch $(@:.chkexe_=.chkexe) || \
+ (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
+ (cat $${log} && false) || exit 1; \
+ echo "" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
+ echo "============================" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)"; \
+ cat $${log}; \
+ fi; \
+ fi
+
+# The dummysh.chkexe here prevents the target from being
+# empty if there are no tests in the current directory.
+# $${log} is the log file.
+# $${tname} is the name of test.
+$(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
+ @if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummysh.chkexe_"; then \
+ cmd=$(@:.chkexe_=);\
+ tname=`basename $$cmd`;\
+ chkname=`basename $(@:.chkexe_=.chkexe)`;\
+ log=`basename $(@:.chkexe_=.chklog)`; \
+ echo "============================"; \
+ if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \
+ echo "No need to test $${tname} again."; \
+ else \
+ echo "============================" > $${log}; \
+ if test "X$(FORTRAN_API)" = "Xyes"; then \
+ echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
+ echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ elif test "X$(CXX_API)" = "Xyes"; then \
+ echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
+ echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ else \
+ echo "Testing $${tname} $(TEST_FLAGS)"; \
+ echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ fi; \
+ echo "============================" >> $${log}; \
+ RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)" \
+ srcdir="$(srcdir)" \
+ $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \
+ && touch $${chkname} || \
+ (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
+ (cat $${log} && false) || exit 1; \
+ echo "" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
+ echo "============================" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)"; \
+ cat $${log}; \
+ fi; \
+ echo "============================"; \
+ fi
+
+# Actual execution of check-p.
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
+ @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \
+ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+ fi
+ @if test -n "$(TEST_PROG_PARA)"; then \
+ echo "**** Hint ****"; \
+ echo "Parallel test files reside in the current directory" \
+ "by default."; \
+ echo "Set HDF5_PARAPREFIX to use another directory. E.g.,"; \
+ echo " HDF5_PARAPREFIX=/PFS/user/me"; \
+ echo " export HDF5_PARAPREFIX"; \
+ echo " make check"; \
+ echo "**** end of Hint ****"; \
+ fi
+ @for test in $(TEST_PROG_PARA) dummy; do \
+ if test $$test != dummy; then \
+ $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
+ RUNEXEC="$(RUNPARALLEL)" || exit 1; \
+ fi; \
+ done
+ @for test in $(TEST_SCRIPT_PARA) dummy; do \
+ if test $$test != dummy; then \
+ $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
+ fi; \
+ done
+ @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \
+ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+ fi
+
+# Run test with different Virtual File Driver
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
+ @for vfd in $(VFD_LIST) dummy; do \
+ if test $$vfd != dummy; then \
+ echo "============================"; \
+ echo "Testing Virtual File Driver $$vfd"; \
+ echo "============================"; \
+ $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1; \
+ HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \
+ fi; \
+ done
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/misc/vds/UC_1.h b/tools/misc/vds/UC_1.h
new file mode 100644
index 0000000..29df72b
--- /dev/null
+++ b/tools/misc/vds/UC_1.h
@@ -0,0 +1,150 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef UC_1_H
+#define UC_1_H
+
+#include "hdf5.h"
+
+#include "UC_common.h"
+
+/*
+ * Definitions for VDS use case 1
+ *
+ * Datasets have a single unlimited dimension and two fixed dimensions. They
+ * are mapped along a single dimension in the VDS with no gaps between them.
+ */
+
+/* virtual dataset <---> source dataset mapping and sizes
+
+ ***************** --+
+ * A * K
+ ***************** --+
+ * * |
+ * B * N
+ * * |
+ ***************** --+
+ * C *
+ *****************
+ * *
+ * D *
+ * *
+ *****************
+ * E *
+ *****************
+ * *
+ * F *
+ * *
+ *****************
+
+ | |
+ +-------M-------+
+
+
+ dim[0]
+ /
+ /
+ /
+ -----> dim[2]
+ |
+ |
+ |
+ dim[1]
+
+ */
+
+
+#define UC_1_N_SOURCES 6
+
+/* Dataset dimensions */
+#define UC_1_SM_HEIGHT 2 /* K */
+#define UC_1_LG_HEIGHT 4 /* N */
+#define UC_1_SM_LG_HEIGHT 6 /* SM_HEIGHT + LG_HEIGHT */
+#define UC_1_FULL_HEIGHT 18 /* (3 * K) + (3 * N) */
+#define UC_1_HALF_HEIGHT 9
+#define UC_1_WIDTH 8 /* M */
+#define UC_1_HALF_WIDTH 4
+
+#define UC_1_N_MAX_PLANES H5S_UNLIMITED /* max number of planes */
+#define UC_1_N_TEST_PLANES 5 /* number of planes we write */
+
+/* Dataset datatypes */
+#define UC_1_SOURCE_DATATYPE H5T_STD_I32LE
+#define UC_1_VDS_DATATYPE H5T_STD_I32LE
+
+/* Starting size of datasets, both source and VDS */
+static hsize_t UC_1_DIMS[UC_1_N_SOURCES][RANK] = {
+ {0, UC_1_SM_HEIGHT, UC_1_WIDTH},
+ {0, UC_1_LG_HEIGHT, UC_1_WIDTH},
+ {0, UC_1_SM_HEIGHT, UC_1_WIDTH},
+ {0, UC_1_LG_HEIGHT, UC_1_WIDTH},
+ {0, UC_1_SM_HEIGHT, UC_1_WIDTH},
+ {0, UC_1_LG_HEIGHT, UC_1_WIDTH}
+};
+static hsize_t UC_1_VDS_DIMS[RANK] = {0, UC_1_FULL_HEIGHT, UC_1_WIDTH};
+
+/* Maximum size of datasets, both source and VDS */
+static hsize_t UC_1_MAX_DIMS[UC_1_N_SOURCES][RANK] = {
+ {UC_1_N_MAX_PLANES, UC_1_SM_HEIGHT, UC_1_WIDTH},
+ {UC_1_N_MAX_PLANES, UC_1_LG_HEIGHT, UC_1_WIDTH},
+ {UC_1_N_MAX_PLANES, UC_1_SM_HEIGHT, UC_1_WIDTH},
+ {UC_1_N_MAX_PLANES, UC_1_LG_HEIGHT, UC_1_WIDTH},
+ {UC_1_N_MAX_PLANES, UC_1_SM_HEIGHT, UC_1_WIDTH},
+ {UC_1_N_MAX_PLANES, UC_1_LG_HEIGHT, UC_1_WIDTH}
+};
+static hsize_t UC_1_VDS_MAX_DIMS[RANK] = {UC_1_N_MAX_PLANES, UC_1_FULL_HEIGHT, UC_1_WIDTH};
+
+/* Planes */
+static hsize_t UC_1_PLANES[UC_1_N_SOURCES][RANK] = {
+ {1, UC_1_SM_HEIGHT, UC_1_WIDTH},
+ {1, UC_1_LG_HEIGHT, UC_1_WIDTH},
+ {1, UC_1_SM_HEIGHT, UC_1_WIDTH},
+ {1, UC_1_LG_HEIGHT, UC_1_WIDTH},
+ {1, UC_1_SM_HEIGHT, UC_1_WIDTH},
+ {1, UC_1_LG_HEIGHT, UC_1_WIDTH}
+};
+static hsize_t UC_1_VDS_PLANE[RANK] = {1, UC_1_FULL_HEIGHT, UC_1_WIDTH};
+
+/* File names for source datasets */
+static char UC_1_FILE_NAMES[UC_1_N_SOURCES][NAME_LEN] = {
+ {"1_a.h5"},
+ {"1_b.h5"},
+ {"1_c.h5"},
+ {"1_d.h5"},
+ {"1_e.h5"},
+ {"1_f.h5"}
+};
+
+/* VDS file name */
+static char UC_1_VDS_FILE_NAME[NAME_LEN] = "1_vds.h5";
+
+/* Dataset names */
+static char UC_1_SOURCE_DSET_NAME[NAME_LEN] = "source_dset";
+static char UC_1_SOURCE_DSET_PATH[NAME_LEN] = "/source_dset";
+static char UC_1_VDS_DSET_NAME[NAME_LEN] = "vds_dset";
+
+/* Fill values */
+static hsize_t UC_1_FILL_VALUES[UC_1_N_SOURCES] = {
+ -1,
+ -2,
+ -3,
+ -4,
+ -5,
+ -6
+};
+static int UC_1_VDS_FILL_VALUE = -9;
+
+#endif /* UC_1_H */
+
diff --git a/tools/misc/vds/UC_1_one_dim_gen.c b/tools/misc/vds/UC_1_one_dim_gen.c
new file mode 100644
index 0000000..a78268b
--- /dev/null
+++ b/tools/misc/vds/UC_1_one_dim_gen.c
@@ -0,0 +1,239 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * File/dataset generator for VDS use case 1
+ *
+ * See the header file for a description.
+ */
+
+#include <stdio.h>
+#include <stdlib.h>
+
+#include "hdf5.h"
+
+#include "UC_common.h"
+#include "UC_1.h"
+
+
+int
+main(int argc, char *argv[])
+{
+ hid_t src_sid = -1; /* source dataset's dataspace ID */
+ hid_t src_dcplid = -1; /* source dataset property list ID */
+
+ hid_t vds_sid = -1; /* VDS dataspace ID */
+ hid_t vds_dcplid = -1; /* VDS dataset property list ID */
+
+ hid_t fid = -1; /* HDF5 file ID */
+ hid_t did = -1; /* dataset ID */
+ hid_t msid = -1; /* memory dataspace ID */
+ hid_t fsid = -1; /* file dataspace ID */
+
+ hsize_t extent[RANK]; /* dataset extents */
+ hsize_t start[RANK]; /* starting point for hyperslab */
+ int map_start = -1; /* starting point in the VDS map */
+
+ int *buffer = NULL; /* data buffer */
+ hsize_t count = 0; /* number of elements in a plane */
+ int n_planes = -1; /* number of planes to write */
+ int value = -1; /* value written to datasets */
+
+ int i; /* iterator */
+ int j; /* iterator */
+ int k; /* iterator */
+
+
+ /* Start by creating the virtual dataset (VDS) dataspace and creation
+ * property list. The individual source datasets are then created
+ * and the VDS map (stored in the VDS property list) is updated.
+ */
+
+ /* Create VDS dcpl */
+ if((vds_dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ UC_ERROR
+ if(H5Pset_fill_value(vds_dcplid, UC_1_VDS_DATATYPE,
+ &UC_1_VDS_FILL_VALUE) < 0)
+ UC_ERROR
+
+ /* Create VDS dataspace */
+ if((vds_sid = H5Screate_simple(RANK, UC_1_VDS_DIMS,
+ UC_1_VDS_MAX_DIMS)) < 0)
+ UC_ERROR
+
+ /************************************
+ * Create source files and datasets *
+ ************************************/
+
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ map_start = 0;
+
+ for(i = 0; i < UC_1_N_SOURCES; i++) {
+
+ /* Create source dataset dcpl */
+ if((src_dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ UC_ERROR
+ if(H5Pset_chunk(src_dcplid, RANK, UC_1_PLANES[i]) < 0)
+ UC_ERROR
+ if(H5Pset_fill_value(src_dcplid, UC_1_SOURCE_DATATYPE,
+ &UC_1_FILL_VALUES[i]) < 0)
+ UC_ERROR
+ if(0 != i % 2)
+ if(H5Pset_deflate(src_dcplid, COMPRESSION_LEVEL) < 0)
+ UC_ERROR
+
+ /* Create source file, dataspace, and dataset */
+ if((fid = H5Fcreate(UC_1_FILE_NAMES[i], H5F_ACC_TRUNC,
+ H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ UC_ERROR
+ if((src_sid = H5Screate_simple(RANK, UC_1_DIMS[i],
+ UC_1_MAX_DIMS[i])) < 0)
+ UC_ERROR
+ if((did = H5Dcreate2(fid, UC_1_SOURCE_DSET_NAME,
+ UC_1_SOURCE_DATATYPE, src_sid,
+ H5P_DEFAULT, src_dcplid, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* Set the dataset's extent (will eventually vary with i) */
+ extent[0] = UC_1_N_TEST_PLANES;
+ extent[1] = UC_1_PLANES[i][1];
+ extent[2] = UC_1_PLANES[i][2];
+ if(H5Dset_extent(did, extent) < 0)
+ UC_ERROR
+
+ /* Create a data buffer that represents a plane */
+ count = UC_1_PLANES[i][1] * UC_1_PLANES[i][2];
+ if(NULL == (buffer = (int *)malloc(count * sizeof(int))))
+ UC_ERROR
+
+ /* Create the memory dataspace */
+ if((msid = H5Screate_simple(RANK, UC_1_PLANES[i], NULL)) < 0)
+ UC_ERROR
+
+ /* Get the file dataspace */
+ if((fsid = H5Dget_space(did)) < 0)
+ UC_ERROR
+
+ /* Write planes to the dataset, number will eventually vary with i */
+ n_planes = UC_1_N_TEST_PLANES;
+ for(j = 0; j < n_planes; j++) {
+
+ value = ((i + 1) * 10) + j;
+ for(k = 0; k < count; k++)
+ buffer[k] = value;
+
+ start[0] = j;
+ start[1] = 0;
+ start[2] = 0;
+ if(H5Sselect_hyperslab(fsid, H5S_SELECT_SET, start, NULL, UC_1_PLANES[i], NULL) < 0)
+ UC_ERROR
+ if(H5Dwrite(did, H5T_NATIVE_INT, msid, fsid, H5P_DEFAULT, buffer) < 0)
+ UC_ERROR
+
+ } /* end for */
+
+ /* set up hyperslabs for source and destination datasets */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ if(H5Sselect_hyperslab(src_sid, H5S_SELECT_SET, start, NULL,
+ UC_1_MAX_DIMS[i], NULL) < 0)
+ UC_ERROR
+ start[0] = 0;
+ start[1] = map_start;
+ start[2] = 0;
+ if(H5Sselect_hyperslab(vds_sid, H5S_SELECT_SET, start, NULL,
+ UC_1_MAX_DIMS[i], NULL) < 0)
+ UC_ERROR
+ map_start += UC_1_PLANES[i][1];
+
+ /* Add VDS mapping */
+ if(H5Pset_virtual(vds_dcplid, vds_sid, UC_1_FILE_NAMES[i],
+ UC_1_SOURCE_DSET_PATH, src_sid) < 0)
+ UC_ERROR
+
+ /* close */
+ if(H5Sclose(src_sid) < 0)
+ UC_ERROR
+ if(H5Pclose(src_dcplid) < 0)
+ UC_ERROR
+ if(H5Sclose(msid) < 0)
+ UC_ERROR
+ if(H5Sclose(fsid) < 0)
+ UC_ERROR
+ if(H5Dclose(did) < 0)
+ UC_ERROR
+ if(H5Fclose(fid) < 0)
+ UC_ERROR
+ free(buffer);
+
+ } /* end for */
+
+
+ /*******************
+ * Create VDS file *
+ *******************/
+
+ /* file */
+ if((fid = H5Fcreate(UC_1_VDS_FILE_NAME, H5F_ACC_TRUNC,
+ H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* dataset */
+ if((did = H5Dcreate2(fid, UC_1_VDS_DSET_NAME, UC_1_VDS_DATATYPE, vds_sid,
+ H5P_DEFAULT, vds_dcplid, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* close */
+ if(H5Pclose(vds_dcplid) < 0)
+ UC_ERROR
+ if(H5Sclose(vds_sid) < 0)
+ UC_ERROR
+ if(H5Dclose(did) < 0)
+ UC_ERROR
+ if(H5Fclose(fid) < 0)
+ UC_ERROR
+
+ return EXIT_SUCCESS;
+
+error:
+
+ H5E_BEGIN_TRY {
+ if(src_sid >= 0)
+ (void)H5Sclose(src_sid);
+ if(src_dcplid >= 0)
+ (void)H5Pclose(src_dcplid);
+ if(vds_sid >= 0)
+ (void)H5Sclose(vds_sid);
+ if(vds_dcplid >= 0)
+ (void)H5Pclose(vds_dcplid);
+ if(fid >= 0)
+ (void)H5Fclose(fid);
+ if(did >= 0)
+ (void)H5Dclose(did);
+ if(msid >= 0)
+ (void)H5Sclose(msid);
+ if(fsid >= 0)
+ (void)H5Sclose(fsid);
+ if(buffer != NULL)
+ free(buffer);
+ } H5E_END_TRY
+
+ return EXIT_FAILURE;
+
+} /* end main */
+
diff --git a/tools/misc/vds/UC_2.h b/tools/misc/vds/UC_2.h
new file mode 100644
index 0000000..3e4e4fd
--- /dev/null
+++ b/tools/misc/vds/UC_2.h
@@ -0,0 +1,151 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef UC_2_H
+#define UC_2_H
+
+#include "hdf5.h"
+
+/*
+ * Definitions for VDS use case 2
+ *
+ * Datasets have a single unlimited dimension and two fixed dimensions. They
+ * are mapped along two dimensions in the VDS with no gaps between them.
+ */
+
+/* virtual dataset <---> source dataset mapping and sizes
+
+ **********************************
+ * A * *
+ ***************** D *
+ * * *
+ * B * *
+ * ******************
+ ***************** E *
+ * C * *
+ **********************************
+
+
+ dim[0]
+ /
+ /
+ /
+ -----> dim[2]
+ |
+ |
+ |
+ dim[1]
+
+ */
+
+#define UC_2_N_SOURCES 5
+
+/* Dataset dimensions */
+#define UC_2_A_HEIGHT 2
+#define UC_2_B_HEIGHT 4
+#define UC_2_AB_HEIGHT 6 /* For hyperslab start position */
+#define UC_2_C_HEIGHT 2
+#define UC_2_D_HEIGHT 5
+#define UC_2_E_HEIGHT 3
+#define UC_2_FULL_HEIGHT 8 /* A+B+C and D+E */
+#define UC_2_WIDTH 7
+#define UC_2_FULL_WIDTH 14 /* 2*width */
+
+#define UC_2_N_PLANES_IN_SERIES 3 /* number of planes in a series of sub-images */
+#define UC_2_N_MAX_PLANES H5S_UNLIMITED /* max number of planes */
+#define UC_2_N_TEST_PLANES 6 /* number of planes we write */
+
+/* Dataset datatypes */
+#define UC_2_SOURCE_DATATYPE H5T_STD_I32LE
+#define UC_2_VDS_DATATYPE H5T_STD_I32LE
+
+/* Starting size of datasets, both source and VDS */
+static hsize_t UC_2_DIMS[UC_2_N_SOURCES][RANK] = {
+ {0, UC_2_A_HEIGHT, UC_2_WIDTH},
+ {0, UC_2_B_HEIGHT, UC_2_WIDTH},
+ {0, UC_2_C_HEIGHT, UC_2_WIDTH},
+ {0, UC_2_D_HEIGHT, UC_2_WIDTH},
+ {0, UC_2_E_HEIGHT, UC_2_WIDTH}
+};
+static hsize_t UC_2_VDS_DIMS[RANK] = {0, UC_2_FULL_HEIGHT, UC_2_FULL_WIDTH};
+
+/* Maximum size of datasets, both source and VDS */
+static hsize_t UC_2_MAX_DIMS[UC_2_N_SOURCES][RANK] = {
+ {UC_2_N_MAX_PLANES, UC_2_A_HEIGHT, UC_2_WIDTH},
+ {UC_2_N_MAX_PLANES, UC_2_B_HEIGHT, UC_2_WIDTH},
+ {UC_2_N_MAX_PLANES, UC_2_C_HEIGHT, UC_2_WIDTH},
+ {UC_2_N_MAX_PLANES, UC_2_D_HEIGHT, UC_2_WIDTH},
+ {UC_2_N_MAX_PLANES, UC_2_E_HEIGHT, UC_2_WIDTH}
+};
+static hsize_t UC_2_VDS_MAX_DIMS[RANK] = {UC_2_N_MAX_PLANES, UC_2_FULL_HEIGHT, UC_2_FULL_WIDTH};
+
+/* Positions of source datasets in the VDS */
+static hsize_t UC_2_POSITIONS[UC_2_N_SOURCES][RANK] = {
+ /* A */ {0, 0, 0},
+ /* B */ {0, UC_2_A_HEIGHT, 0},
+ /* C */ {0, UC_2_AB_HEIGHT, 0},
+ /* D */ {0, 0, UC_2_WIDTH},
+ /* E */ {0, UC_2_D_HEIGHT, UC_2_WIDTH}
+};
+
+/* Planes */
+static hsize_t UC_2_PLANES[UC_2_N_SOURCES][RANK] = {
+ {1, UC_2_A_HEIGHT, UC_2_WIDTH},
+ {1, UC_2_B_HEIGHT, UC_2_WIDTH},
+ {1, UC_2_C_HEIGHT, UC_2_WIDTH},
+ {1, UC_2_D_HEIGHT, UC_2_WIDTH},
+ {1, UC_2_E_HEIGHT, UC_2_WIDTH}
+};
+static hsize_t UC_2_VDS_SUB_IMAGE[RANK] = {1, UC_2_FULL_HEIGHT, UC_2_WIDTH};
+static hsize_t UC_2_VDS_PLANE[RANK] = {1, UC_2_FULL_HEIGHT, UC_2_FULL_WIDTH};
+
+/* Chunk dimensions */
+static hsize_t UC_2_CHUNK_DIMS[UC_2_N_SOURCES][RANK] = {
+ {UC_2_N_PLANES_IN_SERIES, UC_2_A_HEIGHT, UC_2_WIDTH},
+ {UC_2_N_PLANES_IN_SERIES, UC_2_B_HEIGHT, UC_2_WIDTH},
+ {UC_2_N_PLANES_IN_SERIES, UC_2_C_HEIGHT, UC_2_WIDTH},
+ {UC_2_N_PLANES_IN_SERIES, UC_2_D_HEIGHT, UC_2_WIDTH},
+ {UC_2_N_PLANES_IN_SERIES, UC_2_E_HEIGHT, UC_2_WIDTH}
+};
+
+/* File names for source datasets */
+static char UC_2_FILE_NAMES[UC_2_N_SOURCES][NAME_LEN] = {
+ {"2_a.h5"},
+ {"2_b.h5"},
+ {"2_c.h5"},
+ {"2_d.h5"},
+ {"2_e.h5"}
+};
+
+/* VDS file name */
+#define UC_2_VDS_FILE_NAME "2_vds.h5"
+
+/* Dataset names */
+#define UC_2_SOURCE_DSET_NAME "source_dset"
+#define UC_2_SOURCE_DSET_PATH "/source_dset"
+#define UC_2_VDS_DSET_NAME "vds_dset"
+
+/* Fill values */
+static hsize_t UC_2_FILL_VALUES[UC_2_N_SOURCES] = {
+ -1,
+ -2,
+ -3,
+ -4,
+ -5
+};
+static int UC_2_VDS_FILL_VALUE = -9;
+
+#endif /* UC_2_H */
+
diff --git a/tools/misc/vds/UC_2_two_dims_gen.c b/tools/misc/vds/UC_2_two_dims_gen.c
new file mode 100644
index 0000000..b5fd319
--- /dev/null
+++ b/tools/misc/vds/UC_2_two_dims_gen.c
@@ -0,0 +1,230 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * File/dataset generator for VDS use case 2
+ *
+ * See the header file for a description.
+ */
+
+
+#include <stdlib.h>
+
+#include "hdf5.h"
+
+#include "UC_common.h"
+#include "UC_2.h"
+
+int
+main(int argc, char *argv[])
+{
+ hid_t src_sid = -1; /* source dataset's dataspace ID */
+ hid_t src_dcplid = -1; /* source dataset property list ID */
+
+ hid_t vds_sid = -1; /* VDS dataspace ID */
+ hid_t vds_dcplid = -1; /* VDS dataset property list ID */
+
+ hid_t fid = -1; /* HDF5 file ID */
+ hid_t did = -1; /* dataset ID */
+ hid_t msid = -1; /* memory dataspace ID */
+ hid_t fsid = -1; /* file dataspace ID */
+
+ hsize_t start[RANK]; /* starting point for hyperslab */
+ hsize_t extent[RANK]; /* dataset extents */
+
+ int *buffer = NULL; /* data buffer */
+ int value = -1; /* value written to datasets */
+ hsize_t count = 0; /* number of elements in a plane */
+ int n_planes = -1; /* number of planes to write */
+
+ int i; /* iterator */
+ int j; /* iterator */
+ int k; /* iterator */
+
+
+ /* Start by creating the virtual dataset (VDS) dataspace and creation
+ * property list. The individual source datasets are then created
+ * and the VDS map (stored in the VDS property list) is updated.
+ */
+
+ /* Create VDS dcpl */
+ if((vds_dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ UC_ERROR
+ if(H5Pset_fill_value(vds_dcplid, UC_2_VDS_DATATYPE,
+ &UC_2_VDS_FILL_VALUE) < 0)
+ UC_ERROR
+
+ /* Create VDS dataspace */
+ if((vds_sid = H5Screate_simple(RANK, UC_2_VDS_DIMS,
+ UC_2_VDS_MAX_DIMS)) < 0)
+ UC_ERROR
+
+ /************************************
+ * Create source files and datasets *
+ ************************************/
+
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+
+ for(i = 0; i < UC_2_N_SOURCES; i++) {
+
+ /* source dataset dcpl */
+ if((src_dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ UC_ERROR
+ if(H5Pset_chunk(src_dcplid, RANK, UC_2_CHUNK_DIMS[i]) < 0)
+ UC_ERROR
+ if(H5Pset_fill_value(src_dcplid, UC_2_SOURCE_DATATYPE,
+ &UC_2_FILL_VALUES[i]) < 0)
+ UC_ERROR
+ if(H5Pset_deflate(src_dcplid, COMPRESSION_LEVEL) < 0)
+ UC_ERROR
+
+ /* Create source file, dataspace, and dataset */
+ if((fid = H5Fcreate(UC_2_FILE_NAMES[i], H5F_ACC_TRUNC,
+ H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ UC_ERROR
+ if((src_sid = H5Screate_simple(RANK, UC_2_DIMS[i],
+ UC_2_MAX_DIMS[i])) < 0)
+ UC_ERROR
+ if((did = H5Dcreate2(fid, UC_2_SOURCE_DSET_NAME,
+ UC_2_SOURCE_DATATYPE, src_sid,
+ H5P_DEFAULT, src_dcplid, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* Set the dataset's extent (will eventually vary with i) */
+ extent[0] = UC_2_N_TEST_PLANES;
+ extent[1] = UC_2_PLANES[i][1];
+ extent[2] = UC_2_PLANES[i][2];
+ if(H5Dset_extent(did, extent) < 0)
+ UC_ERROR
+
+ /* Create a data buffer that represents a plane */
+ count = UC_2_PLANES[i][1] * UC_2_PLANES[i][2];
+ if(NULL == (buffer = (int *)malloc(count * sizeof(int))))
+ UC_ERROR
+
+ /* Create the memory dataspace */
+ if((msid = H5Screate_simple(RANK, UC_2_PLANES[i], NULL)) < 0)
+ UC_ERROR
+
+ /* Get the file dataspace */
+ if((fsid = H5Dget_space(did)) < 0)
+ UC_ERROR
+
+ /* Write planes to the dataset, number will eventually vary with i */
+ n_planes = UC_2_N_TEST_PLANES;
+ for(j = 0; j < n_planes; j++) {
+
+ value = ((i + 1) * 10) + j;
+ for(k = 0; k < count; k++)
+ buffer[k] = value;
+
+ start[0] = j;
+ start[1] = 0;
+ start[2] = 0;
+ if(H5Sselect_hyperslab(fsid, H5S_SELECT_SET, start, NULL, UC_2_PLANES[i], NULL) < 0)
+ UC_ERROR
+ if(H5Dwrite(did, H5T_NATIVE_INT, msid, fsid, H5P_DEFAULT, buffer) < 0)
+ UC_ERROR
+
+ } /* end for */
+
+ /* set up hyperslabs for source and destination datasets */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ if(H5Sselect_hyperslab(src_sid, H5S_SELECT_SET, start, NULL,
+ UC_2_MAX_DIMS[i], NULL) < 0)
+ UC_ERROR
+ if(H5Sselect_hyperslab(vds_sid, H5S_SELECT_SET, UC_2_POSITIONS[i], NULL,
+ UC_2_MAX_DIMS[i], NULL) < 0)
+ UC_ERROR
+
+ /* Add VDS mapping */
+ if(H5Pset_virtual(vds_dcplid, vds_sid, UC_2_FILE_NAMES[i],
+ UC_2_SOURCE_DSET_PATH, src_sid) < 0)
+ UC_ERROR
+
+ /* close */
+ if(H5Sclose(msid) < 0)
+ UC_ERROR
+ if(H5Sclose(fsid) < 0)
+ UC_ERROR
+ if(H5Sclose(src_sid) < 0)
+ UC_ERROR
+ if(H5Pclose(src_dcplid) < 0)
+ UC_ERROR
+ if(H5Dclose(did) < 0)
+ UC_ERROR
+ if(H5Fclose(fid) < 0)
+ UC_ERROR
+ free(buffer);
+
+ } /* end for */
+
+ /*******************************
+ * Create VDS file and dataset *
+ *******************************/
+
+ /* file */
+ if((fid = H5Fcreate(UC_2_VDS_FILE_NAME, H5F_ACC_TRUNC,
+ H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* dataset */
+ if((did = H5Dcreate2(fid, UC_2_VDS_DSET_NAME, UC_2_VDS_DATATYPE, vds_sid,
+ H5P_DEFAULT, vds_dcplid, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* close */
+ if(H5Pclose(vds_dcplid) < 0)
+ UC_ERROR
+ if(H5Sclose(vds_sid) < 0)
+ UC_ERROR
+ if(H5Dclose(did) < 0)
+ UC_ERROR
+ if(H5Fclose(fid) < 0)
+ UC_ERROR
+
+ return EXIT_SUCCESS;
+
+error:
+
+ H5E_BEGIN_TRY {
+ if(src_sid >= 0)
+ (void)H5Sclose(src_sid);
+ if(src_dcplid >= 0)
+ (void)H5Pclose(src_dcplid);
+ if(vds_sid >= 0)
+ (void)H5Sclose(vds_sid);
+ if(vds_dcplid >= 0)
+ (void)H5Pclose(vds_dcplid);
+ if(fid >= 0)
+ (void)H5Fclose(fid);
+ if(did >= 0)
+ (void)H5Dclose(did);
+ if(msid >= 0)
+ (void)H5Sclose(msid);
+ if(fsid >= 0)
+ (void)H5Sclose(fsid);
+ if(buffer != NULL)
+ free(buffer);
+ } H5E_END_TRY
+
+ return EXIT_FAILURE;
+
+} /* end main() */
+
diff --git a/tools/misc/vds/UC_3.h b/tools/misc/vds/UC_3.h
new file mode 100644
index 0000000..a27c3cf
--- /dev/null
+++ b/tools/misc/vds/UC_3.h
@@ -0,0 +1,78 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef UC_3_H
+#define UC_3_H
+
+#include "hdf5.h"
+
+#include "UC_1.h"
+#include "UC_2.h"
+
+/*
+ * Definitions for VDS use case 3
+ *
+ * Datasets have a single unlimited dimension and one or two fixed
+ * dimensions (they are reused from use cases 1 and 2). In this use case,
+ * the datasets are mapped in the VDS with gaps between them.
+ */
+
+/* VDS dimensions
+ * Height and width are large enough to encompass the
+ * mapped source datasets with gaps.
+ */
+#define UC_31_VDS_HEIGHT 25 /* full height + 7 (gaps of 1) */
+#define UC_31_VDS_WIDTH 8 /* full width + 0 (no gaps) */
+#define UC_32_VDS_HEIGHT 13 /* full height + 5 */
+#define UC_32_VDS_WIDTH 19 /* full width + 5 */
+#define UC_31_GAP 1
+
+/* VDS datatypes */
+#define UC_31_VDS_DATATYPE H5T_STD_I32LE
+#define UC_32_VDS_DATATYPE H5T_STD_I32LE
+
+/* Starting size of virtual datasets */
+static hsize_t UC_31_VDS_DIMS[RANK] = {0, UC_31_VDS_HEIGHT, UC_31_VDS_WIDTH};
+static hsize_t UC_32_VDS_DIMS[RANK] = {0, UC_32_VDS_HEIGHT, UC_32_VDS_WIDTH};
+
+/* Maximum size of virtual datasets */
+static hsize_t UC_31_VDS_MAX_DIMS[RANK] = {UC_1_N_MAX_PLANES, UC_31_VDS_HEIGHT, UC_31_VDS_WIDTH};
+static hsize_t UC_32_VDS_MAX_DIMS[RANK] = {UC_2_N_MAX_PLANES, UC_32_VDS_HEIGHT, UC_32_VDS_WIDTH};
+
+/* Positions of mapped source datasets */
+static hsize_t UC_32_POSITIONS[UC_2_N_SOURCES][RANK] = {
+ /* A */ {0, 1, 1},
+ /* B */ {0, 4, 0},
+ /* C */ {0, 11, 4},
+ /* D */ {0, 1, 9},
+ /* E */ {0, 8, 12}
+};
+
+/* Planes */
+static hsize_t UC_31_VDS_PLANE[RANK] = {1, UC_31_VDS_HEIGHT, UC_31_VDS_WIDTH};
+static hsize_t UC_32_VDS_PLANE[RANK] = {1, UC_32_VDS_HEIGHT, UC_32_VDS_WIDTH};
+
+/* VDS file names */
+#define UC_31_VDS_FILE_NAME "3_1_vds.h5"
+#define UC_32_VDS_FILE_NAME "3_2_vds.h5"
+
+/* Dataset name */
+#define UC_3_VDS_DSET_NAME "vds_dset"
+
+/* Fill value */
+static int UC_3_VDS_FILL_VALUE = -9;
+
+#endif /* UC_3_H */
+
diff --git a/tools/misc/vds/UC_3_gaps_gen.c b/tools/misc/vds/UC_3_gaps_gen.c
new file mode 100644
index 0000000..1f150c1
--- /dev/null
+++ b/tools/misc/vds/UC_3_gaps_gen.c
@@ -0,0 +1,255 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * File/dataset generator for VDS use case 3
+ *
+ * See the header file for a description.
+ */
+
+#include <stdlib.h>
+#include <string.h>
+
+#include <hdf5.h>
+
+#include "UC_common.h"
+#include "UC_3.h"
+
+/* Create the VDS that uses use case 1 files */
+herr_t
+create_3_1_vds(void)
+{
+ hid_t src_sid = -1; /* source dataset's dataspace ID */
+ hid_t vds_sid = -1; /* VDS dataspace ID */
+ hid_t vds_dcplid = -1; /* VDS dataset property list ID */
+
+ hid_t fid = -1; /* HDF5 file ID */
+ hid_t did = -1; /* dataset ID */
+
+ hsize_t start[RANK]; /* source starting point for hyperslab */
+ hsize_t position[RANK]; /* vds mapping positions */
+
+ int i; /* iterator */
+
+ /* Create VDS dcpl */
+ if((vds_dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ UC_ERROR
+ if(H5Pset_fill_value(vds_dcplid, UC_31_VDS_DATATYPE,
+ &UC_3_VDS_FILL_VALUE) < 0)
+ UC_ERROR
+
+ /* Create VDS dataspace */
+ if((vds_sid = H5Screate_simple(RANK, UC_31_VDS_DIMS,
+ UC_31_VDS_MAX_DIMS)) < 0)
+ UC_ERROR
+
+ /* Set starting positions */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+
+ position[0] = 0;
+ position[1] = UC_31_GAP;
+ position[2] = 0;
+
+ /******************************
+ * Create source-VDS mappings *
+ ******************************/
+ for(i = 0; i < UC_1_N_SOURCES; i++) {
+
+ if((src_sid = H5Screate_simple(RANK, UC_1_DIMS[i],
+ UC_1_MAX_DIMS[i])) < 0)
+ UC_ERROR
+
+ /* set up hyperslabs for source and destination datasets */
+ if(H5Sselect_hyperslab(src_sid, H5S_SELECT_SET, start, NULL,
+ UC_1_MAX_DIMS[i], NULL) < 0)
+ UC_ERROR
+ if(H5Sselect_hyperslab(vds_sid, H5S_SELECT_SET, position,
+ NULL, UC_1_MAX_DIMS[i], NULL) < 0)
+ UC_ERROR
+ position[1] += UC_1_DIMS[i][1] + UC_31_GAP;
+
+ /* Add VDS mapping */
+ if(H5Pset_virtual(vds_dcplid, vds_sid, UC_1_FILE_NAMES[i],
+ UC_1_SOURCE_DSET_PATH, src_sid) < 0)
+ UC_ERROR
+ if(H5Sclose(src_sid) < 0)
+ UC_ERROR
+
+ } /* end for */
+
+ /*******************************
+ * Create VDS file and dataset *
+ *******************************/
+
+ /* file */
+ if((fid = H5Fcreate(UC_31_VDS_FILE_NAME, H5F_ACC_TRUNC,
+ H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* dataset */
+ if((did = H5Dcreate2(fid, UC_3_VDS_DSET_NAME, UC_31_VDS_DATATYPE, vds_sid,
+ H5P_DEFAULT, vds_dcplid, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* close */
+ if(H5Pclose(vds_dcplid) < 0)
+ UC_ERROR
+ if(H5Sclose(vds_sid) < 0)
+ UC_ERROR
+ if(H5Dclose(did) < 0)
+ UC_ERROR
+ if(H5Fclose(fid) < 0)
+ UC_ERROR
+
+ return 0;
+
+error:
+
+ H5E_BEGIN_TRY {
+ if(vds_sid >= 0)
+ (void)H5Sclose(vds_sid);
+ if(vds_dcplid >= 0)
+ (void)H5Pclose(vds_dcplid);
+ if(fid >= 0)
+ (void)H5Fclose(fid);
+ if(did >= 0)
+ (void)H5Dclose(did);
+ } H5E_END_TRY
+
+ return -1;
+
+} /* end create_3_1_vds() */
+
+/* Create the VDS that uses use case 2 files */
+herr_t
+create_3_2_vds(void)
+{
+ hid_t src_sid = -1; /* source dataset's dataspace ID */
+ hid_t vds_sid = -1; /* VDS dataspace ID */
+ hid_t vds_dcplid = -1; /* VDS dataset property list ID */
+
+ hid_t fid = -1; /* HDF5 file ID */
+ hid_t did = -1; /* dataset ID */
+
+ hsize_t start[RANK]; /* source starting point for hyperslab */
+
+ int i; /* iterator */
+
+ /* Create VDS dcpl */
+ if((vds_dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ UC_ERROR
+ if(H5Pset_fill_value(vds_dcplid, UC_32_VDS_DATATYPE,
+ &UC_3_VDS_FILL_VALUE) < 0)
+ UC_ERROR
+
+ /* Create VDS dataspace */
+ if((vds_sid = H5Screate_simple(RANK, UC_32_VDS_DIMS,
+ UC_32_VDS_MAX_DIMS)) < 0)
+ UC_ERROR
+
+ /* Set starting positions */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+
+ /******************************
+ * Create source-VDS mappings *
+ ******************************/
+ for(i = 0; i < UC_2_N_SOURCES; i++) {
+
+ if((src_sid = H5Screate_simple(RANK, UC_2_DIMS[i],
+ UC_2_MAX_DIMS[i])) < 0)
+ UC_ERROR
+
+ /* set up hyperslabs for source and destination datasets */
+ if(H5Sselect_hyperslab(src_sid, H5S_SELECT_SET, start, NULL,
+ UC_2_MAX_DIMS[i], NULL) < 0)
+ UC_ERROR
+ if(H5Sselect_hyperslab(vds_sid, H5S_SELECT_SET, UC_32_POSITIONS[i],
+ NULL, UC_2_MAX_DIMS[i], NULL) < 0)
+ UC_ERROR
+
+ /* Add VDS mapping */
+ if(H5Pset_virtual(vds_dcplid, vds_sid, UC_2_FILE_NAMES[i],
+ UC_2_SOURCE_DSET_PATH, src_sid) < 0)
+ UC_ERROR
+ if(H5Sclose(src_sid) < 0)
+ UC_ERROR
+
+ } /* end for */
+
+ /*******************************
+ * Create VDS file and dataset *
+ *******************************/
+
+ /* file */
+ if((fid = H5Fcreate(UC_32_VDS_FILE_NAME, H5F_ACC_TRUNC,
+ H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* dataset */
+ if((did = H5Dcreate2(fid, UC_3_VDS_DSET_NAME, UC_32_VDS_DATATYPE, vds_sid,
+ H5P_DEFAULT, vds_dcplid, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* close */
+ if(H5Pclose(vds_dcplid) < 0)
+ UC_ERROR
+ if(H5Sclose(vds_sid) < 0)
+ UC_ERROR
+ if(H5Dclose(did) < 0)
+ UC_ERROR
+ if(H5Fclose(fid) < 0)
+ UC_ERROR
+
+ return 0;
+
+error:
+
+ H5E_BEGIN_TRY {
+ if(vds_sid >= 0)
+ (void)H5Sclose(vds_sid);
+ if(vds_dcplid >= 0)
+ (void)H5Pclose(vds_dcplid);
+ if(fid >= 0)
+ (void)H5Fclose(fid);
+ if(did >= 0)
+ (void)H5Dclose(did);
+ } H5E_END_TRY
+
+ return -1;
+
+} /* end create_3_2_vds() */
+
+int
+main(int argc, char *argv[])
+{
+
+ if(create_3_1_vds() < 0)
+ UC_ERROR
+
+ if(create_3_2_vds() < 0)
+ UC_ERROR
+
+ return EXIT_SUCCESS;
+
+error:
+
+ return EXIT_FAILURE;
+
+} /* end main() */
+
diff --git a/tools/misc/vds/UC_4.h b/tools/misc/vds/UC_4.h
new file mode 100644
index 0000000..ce74e63
--- /dev/null
+++ b/tools/misc/vds/UC_4.h
@@ -0,0 +1,86 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef UC_4_H
+#define UC_4_H
+
+#include "hdf5.h"
+
+#include "UC_common.h"
+
+/*
+ * Definitions for VDS use case 4
+ *
+ * Source datasets have three fixed dimensions. In this use case, the
+ * datasets are mapped consecutively in the VDS along a single dimension with
+ * no gaps between them. Datasets are automatically loaded using a
+ * printf-like format string for the file name.
+ */
+
+/* virtual dataset <---> source dataset mapping and sizes */
+
+#define UC_4_N_SOURCES 3
+
+/* Dataset dimensions */
+#define UC_4_SRC_PLANES 3
+#define UC_4_HEIGHT 4
+#define UC_4_WIDTH 4
+
+/* max number of planes for VDS (sources are finite) */
+#define UC_4_VDS_MAX_PLANES H5S_UNLIMITED
+#define UC_4_N_TEST_PLANES 9 /* number of planes in the VDS */
+
+/* Dataset datatypes */
+#define UC_4_SOURCE_DATATYPE H5T_STD_I32LE
+#define UC_4_VDS_DATATYPE H5T_STD_I32LE
+
+/* Starting size of datasets, both source and VDS */
+static hsize_t UC_4_SOURCE_DIMS[RANK] = {0, UC_4_HEIGHT, UC_4_WIDTH};
+static hsize_t UC_4_VDS_DIMS[RANK] = {0, UC_4_HEIGHT, UC_4_WIDTH};
+
+/* Max size of datasets, both source and VDS */
+static hsize_t UC_4_SOURCE_MAX_DIMS[RANK] = {UC_4_SRC_PLANES, UC_4_HEIGHT, UC_4_WIDTH};
+static hsize_t UC_4_VDS_MAX_DIMS[RANK] = {UC_4_VDS_MAX_PLANES, UC_4_HEIGHT, UC_4_WIDTH};
+
+/* Planes (both source and VDS) */
+static hsize_t UC_4_PLANE[RANK] = {1, UC_4_HEIGHT, UC_4_WIDTH};
+
+/* File names for source datasets */
+static char UC_4_FILE_NAMES[UC_4_N_SOURCES][NAME_LEN] = {
+ {"4_0.h5"},
+ {"4_1.h5"},
+ {"4_2.h5"}
+};
+static char UC_4_MAPPING_FILE_NAME[NAME_LEN] = "4_%b.h5";
+
+/* VDS file name */
+static char UC_4_VDS_FILE_NAME[NAME_LEN] = "4_vds.h5";
+
+/* Dataset names */
+static char UC_4_SOURCE_DSET_NAME[NAME_LEN] = "source_dset";
+static char UC_4_SOURCE_DSET_PATH[NAME_LEN] = "/source_dset";
+static char UC_4_VDS_DSET_NAME[NAME_LEN] = "vds_dset";
+
+/* Fill values */
+static hsize_t UC_4_FILL_VALUES[UC_4_N_SOURCES] = {
+ -1,
+ -2,
+ -3
+};
+static int UC_4_VDS_FILL_VALUE = -9;
+
+#endif /* UC_4_H */
+
+
diff --git a/tools/misc/vds/UC_4_printf_gen.c b/tools/misc/vds/UC_4_printf_gen.c
new file mode 100644
index 0000000..c8e111a
--- /dev/null
+++ b/tools/misc/vds/UC_4_printf_gen.c
@@ -0,0 +1,219 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * File/dataset generator for VDS use case 4
+ *
+ * See the header file for a description.
+ */
+
+#include <stdlib.h>
+
+#include <hdf5.h>
+
+#include "UC_common.h"
+#include "UC_4.h"
+
+int
+main(int argc, char *argv[])
+{
+ hid_t src_sid = -1; /* source dataset's dataspace ID */
+ hid_t src_dcplid = -1; /* source dataset property list ID */
+
+ hid_t vds_sid = -1; /* VDS dataspace ID */
+ hid_t vds_dcplid = -1; /* VDS dataset property list ID */
+
+ hid_t fid = -1; /* HDF5 file ID */
+ hid_t did = -1; /* dataset ID */
+ hid_t msid = -1; /* memory dataspace ID */
+ hid_t fsid = -1; /* file dataspace ID */
+
+ /* Hyperslab arrays */
+ hsize_t start[RANK] = {0, 0, 0};
+ hsize_t count[RANK] = {H5S_UNLIMITED, 1, 1};
+
+ int *buffer = NULL; /* data buffer */
+ int value = -1; /* value written to datasets */
+
+ hsize_t n = 0; /* number of elements in a plane */
+
+ int i; /* iterator */
+ int j; /* iterator */
+ int k; /* iterator */
+
+ /************************************
+ * Create source files and datasets *
+ ************************************/
+
+ /* Create source dataspace ID */
+ if((src_sid = H5Screate_simple(RANK, UC_4_SOURCE_DIMS,
+ UC_4_SOURCE_MAX_DIMS)) < 0)
+ UC_ERROR
+ if(H5Sselect_hyperslab(src_sid, H5S_SELECT_SET, start, NULL,
+ UC_4_SOURCE_MAX_DIMS, NULL) < 0)
+ UC_ERROR
+
+ /* Create source files and datasets */
+ for(i = 0; i < UC_4_N_SOURCES; i++) {
+
+ /* source dataset dcpl */
+ if((src_dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ UC_ERROR
+ if(H5Pset_chunk(src_dcplid, RANK, UC_4_PLANE) < 0)
+ UC_ERROR
+ if(H5Pset_fill_value(src_dcplid, UC_4_SOURCE_DATATYPE,
+ &UC_4_FILL_VALUES[i]) < 0)
+ UC_ERROR
+ if(H5Pset_deflate(src_dcplid, COMPRESSION_LEVEL) < 0)
+ UC_ERROR
+
+ /* Create source file and dataset */
+ if((fid = H5Fcreate(UC_4_FILE_NAMES[i], H5F_ACC_TRUNC,
+ H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ UC_ERROR
+ if((did = H5Dcreate2(fid, UC_4_SOURCE_DSET_NAME,
+ UC_4_SOURCE_DATATYPE, src_sid,
+ H5P_DEFAULT, src_dcplid, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* Set the dataset's extent */
+ if(H5Dset_extent(did, UC_4_SOURCE_MAX_DIMS) < 0)
+ UC_ERROR
+
+ /* Create a data buffer that represents a plane */
+ n = UC_4_PLANE[1] * UC_4_PLANE[2];
+ if(NULL == (buffer = (int *)malloc(n * sizeof(int))))
+ UC_ERROR
+
+ /* Create the memory dataspace */
+ if((msid = H5Screate_simple(RANK, UC_4_PLANE, NULL)) < 0)
+ UC_ERROR
+
+ /* Get the file dataspace */
+ if((fsid = H5Dget_space(did)) < 0)
+ UC_ERROR
+
+ /* Write planes to the dataset */
+ for(j = 0; j < UC_4_SRC_PLANES; j++) {
+
+ value = ((i + 1) * 10) + j;
+ for(k = 0; k < n; k++)
+ buffer[k] = value;
+
+ start[0] = j;
+ start[1] = 0;
+ start[2] = 0;
+ if(H5Sselect_hyperslab(fsid, H5S_SELECT_SET, start, NULL, UC_4_PLANE, NULL) < 0)
+ UC_ERROR
+ if(H5Dwrite(did, H5T_NATIVE_INT, msid, fsid, H5P_DEFAULT, buffer) < 0)
+ UC_ERROR
+
+ } /* end for */
+
+ /* close */
+ if(H5Sclose(msid) < 0)
+ UC_ERROR
+ if(H5Sclose(fsid) < 0)
+ UC_ERROR
+ if(H5Pclose(src_dcplid) < 0)
+ UC_ERROR
+ if(H5Dclose(did) < 0)
+ UC_ERROR
+ if(H5Fclose(fid) < 0)
+ UC_ERROR
+ free(buffer);
+
+ } /* end for */
+
+ /*******************
+ * Create VDS file *
+ *******************/
+
+ /* Create file */
+ if((fid = H5Fcreate(UC_4_VDS_FILE_NAME, H5F_ACC_TRUNC,
+ H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* Create VDS dcpl */
+ if((vds_dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ UC_ERROR
+ if(H5Pset_fill_value(vds_dcplid, UC_4_VDS_DATATYPE,
+ &UC_4_VDS_FILL_VALUE) < 0)
+ UC_ERROR
+
+ /* Create VDS dataspace */
+ if((vds_sid = H5Screate_simple(RANK, UC_4_VDS_DIMS,
+ UC_4_VDS_MAX_DIMS)) < 0)
+ UC_ERROR
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ if(H5Sselect_hyperslab(vds_sid, H5S_SELECT_SET, start,
+ UC_4_SOURCE_MAX_DIMS, count, UC_4_SOURCE_MAX_DIMS) < 0)
+ UC_ERROR
+
+ /* Add VDS mapping - The mapped file name uses a printf-like
+ * naming scheme that automatically maps new files.
+ */
+ if(H5Pset_virtual(vds_dcplid, vds_sid, UC_4_MAPPING_FILE_NAME,
+ UC_4_SOURCE_DSET_PATH, src_sid) < 0)
+ UC_ERROR
+
+ /* Create dataset */
+ if((did = H5Dcreate2(fid, UC_4_VDS_DSET_NAME, UC_4_VDS_DATATYPE, vds_sid,
+ H5P_DEFAULT, vds_dcplid, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* close */
+ if(H5Sclose(src_sid) < 0)
+ UC_ERROR
+ if(H5Pclose(vds_dcplid) < 0)
+ UC_ERROR
+ if(H5Sclose(vds_sid) < 0)
+ UC_ERROR
+ if(H5Dclose(did) < 0)
+ UC_ERROR
+ if(H5Fclose(fid) < 0)
+ UC_ERROR
+
+ return EXIT_SUCCESS;
+
+error:
+
+ H5E_BEGIN_TRY {
+ if(src_sid >= 0)
+ (void)H5Sclose(src_sid);
+ if(src_dcplid >= 0)
+ (void)H5Pclose(src_dcplid);
+ if(vds_sid >= 0)
+ (void)H5Sclose(vds_sid);
+ if(vds_dcplid >= 0)
+ (void)H5Pclose(vds_dcplid);
+ if(fid >= 0)
+ (void)H5Fclose(fid);
+ if(did >= 0)
+ (void)H5Dclose(did);
+ if(msid >= 0)
+ (void)H5Sclose(msid);
+ if(fsid >= 0)
+ (void)H5Sclose(fsid);
+ if(buffer != NULL)
+ free(buffer);
+ } H5E_END_TRY
+
+ return EXIT_FAILURE;
+
+} /* end main() */
+
diff --git a/tools/misc/vds/UC_5.h b/tools/misc/vds/UC_5.h
new file mode 100644
index 0000000..b22b177
--- /dev/null
+++ b/tools/misc/vds/UC_5.h
@@ -0,0 +1,83 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef UC_5_H
+#define UC_5_H
+
+#include <hdf5.h>
+
+#include "UC_common.h"
+
+/*
+ * Definitions for VDS use case 5
+ *
+ * Source datasets have one unlimited dimension and two fixed dimensions. In
+ * this use case, the datasets are mapped in the VDS so that alternating
+ * planes in the source are interleaved in the VDS.
+ */
+
+/* virtual dataset <---> source dataset mapping and sizes */
+
+#define UC_5_N_SOURCES 3
+
+/* Dataset dimensions */
+#define UC_5_SRC_PLANES 3
+#define UC_5_HEIGHT 4
+#define UC_5_WIDTH 4
+
+/* max number of planes for datasets */
+#define UC_5_MAX_PLANES H5S_UNLIMITED
+#define UC_5_N_TEST_PLANES 9 /* number of planes in VDS */
+
+/* Dataset datatypes */
+#define UC_5_SOURCE_DATATYPE H5T_STD_I32LE
+#define UC_5_VDS_DATATYPE H5T_STD_I32LE
+
+/* Starting size of datasets, both source and VDS */
+static hsize_t UC_5_SOURCE_DIMS[RANK] = {0, UC_5_HEIGHT, UC_5_WIDTH};
+static hsize_t UC_5_VDS_DIMS[RANK] = {0, UC_5_HEIGHT, UC_5_WIDTH};
+
+/* Max size of datasets, both source and VDS */
+static hsize_t UC_5_SOURCE_MAX_DIMS[RANK] = {UC_5_MAX_PLANES, UC_5_HEIGHT, UC_5_WIDTH};
+static hsize_t UC_5_VDS_MAX_DIMS[RANK] = {UC_5_MAX_PLANES, UC_5_HEIGHT, UC_5_WIDTH};
+
+/* Planes (both source and VDS) */
+static hsize_t UC_5_PLANE[RANK] = {1, UC_5_HEIGHT, UC_5_WIDTH};
+
+/* File names for source datasets */
+static char UC_5_FILE_NAMES[UC_5_N_SOURCES][NAME_LEN] = {
+ {"5_a.h5"},
+ {"5_b.h5"},
+ {"5_c.h5"}
+};
+
+/* VDS file name */
+static char UC_5_VDS_FILE_NAME[NAME_LEN] = "5_vds.h5";
+
+/* Dataset names */
+static char UC_5_SOURCE_DSET_NAME[NAME_LEN] = "source_dset";
+static char UC_5_SOURCE_DSET_PATH[NAME_LEN] = "/source_dset";
+static char UC_5_VDS_DSET_NAME[NAME_LEN] = "vds_dset";
+
+/* Fill values */
+static hsize_t UC_5_FILL_VALUES[UC_5_N_SOURCES] = {
+ -1,
+ -2,
+ -3
+};
+static int UC_5_VDS_FILL_VALUE = -9;
+
+#endif /* UC_5_H */
+
diff --git a/tools/misc/vds/UC_5_stride_gen.c b/tools/misc/vds/UC_5_stride_gen.c
new file mode 100644
index 0000000..984aadc
--- /dev/null
+++ b/tools/misc/vds/UC_5_stride_gen.c
@@ -0,0 +1,243 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * File/dataset generator for VDS use case 5
+ *
+ * See the header file for a description.
+ */
+
+#include <stdlib.h>
+
+#include <hdf5.h>
+
+#include "UC_common.h"
+#include "UC_5.h"
+
+int
+main(int argc, char *argv[])
+{
+ hid_t src_sid = -1; /* source dataset's dataspace ID */
+ hid_t src_dcplid = -1; /* source dataset property list ID */
+
+ hid_t vds_sid = -1; /* VDS dataspace ID */
+ hid_t vds_dcplid = -1; /* VDS dataset property list ID */
+
+ hid_t fid = -1; /* HDF5 file ID */
+ hid_t did = -1; /* dataset ID */
+ hid_t msid = -1; /* memory dataspace ID */
+ hid_t fsid = -1; /* file dataspace ID */
+
+ hsize_t extent[RANK]; /* source dataset extents */
+ hsize_t start[RANK]; /* starting point for hyperslab */
+ hsize_t stride[RANK]; /* hypserslab stride */
+ hsize_t count[RANK]; /* hypserslab count */
+ int map_start = -1; /* starting point in the VDS map */
+
+ int *buffer = NULL; /* data buffer */
+ int value = -1; /* value written to datasets */
+
+ hsize_t n = 0; /* number of elements in a plane */
+
+ int i; /* iterator */
+ int j; /* iterator */
+ int k; /* iterator */
+
+ /* Start by creating the virtual dataset (VDS) dataspace and creation
+ * property list. The individual source datasets are then created
+ * and the VDS map (stored in the VDS property list) is updated.
+ */
+
+ /* Create VDS dcpl */
+ if((vds_dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ UC_ERROR
+ if(H5Pset_fill_value(vds_dcplid, UC_5_VDS_DATATYPE,
+ &UC_5_VDS_FILL_VALUE) < 0)
+ UC_ERROR
+
+ /* Create VDS dataspace */
+ if((vds_sid = H5Screate_simple(RANK, UC_5_VDS_DIMS,
+ UC_5_VDS_MAX_DIMS)) < 0)
+ UC_ERROR
+
+ /*********************************
+ * Map source files and datasets *
+ *********************************/
+
+ /* Hyperslab array setup */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ map_start = 0;
+
+ stride[0] = UC_5_N_SOURCES;
+ stride[1] = 1;
+ stride[2] = 1;
+
+ count[0] = H5S_UNLIMITED;
+ count[1] = 1;
+ count[2] = 1;
+
+ extent[0] = UC_5_SRC_PLANES;
+ extent[1] = UC_5_HEIGHT;
+ extent[2] = UC_5_WIDTH;
+
+ for(i = 0; i < UC_5_N_SOURCES; i++) {
+
+ /* source dataset dcpl */
+ if((src_dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ UC_ERROR
+ if(H5Pset_chunk(src_dcplid, RANK, UC_5_PLANE) < 0)
+ UC_ERROR
+ if(H5Pset_fill_value(src_dcplid, UC_5_SOURCE_DATATYPE,
+ &UC_5_FILL_VALUES[i]) < 0)
+ UC_ERROR
+ if(H5Pset_deflate(src_dcplid, COMPRESSION_LEVEL) < 0)
+ UC_ERROR
+
+ /* Create source file, dataspace, and dataset */
+ if((fid = H5Fcreate(UC_5_FILE_NAMES[i], H5F_ACC_TRUNC,
+ H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ UC_ERROR
+ if((src_sid = H5Screate_simple(RANK, UC_5_SOURCE_DIMS,
+ UC_5_SOURCE_MAX_DIMS)) < 0)
+ UC_ERROR
+ if((did = H5Dcreate2(fid, UC_5_SOURCE_DSET_NAME,
+ UC_5_SOURCE_DATATYPE, src_sid,
+ H5P_DEFAULT, src_dcplid, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* Set the dataset's extent */
+ if(H5Dset_extent(did, extent) < 0)
+ UC_ERROR
+
+ /* Create a data buffer that represents a plane */
+ n = UC_5_PLANE[1] * UC_5_PLANE[2];
+ if(NULL == (buffer = (int *)malloc(n * sizeof(int))))
+ UC_ERROR
+
+ /* Create the memory dataspace */
+ if((msid = H5Screate_simple(RANK, UC_5_PLANE, NULL)) < 0)
+ UC_ERROR
+
+ /* Get the file dataspace */
+ if((fsid = H5Dget_space(did)) < 0)
+ UC_ERROR
+
+ /* Write planes to the dataset */
+ for(j = 0; j < UC_5_SRC_PLANES; j++) {
+
+ value = ((i + 1) * 10) + j;
+ for(k = 0; k < n; k++)
+ buffer[k] = value;
+
+ start[0] = j;
+ start[1] = 0;
+ start[2] = 0;
+ if(H5Sselect_hyperslab(fsid, H5S_SELECT_SET, start, NULL, UC_5_PLANE, NULL) < 0)
+ UC_ERROR
+ if(H5Dwrite(did, H5T_NATIVE_INT, msid, fsid, H5P_DEFAULT, buffer) < 0)
+ UC_ERROR
+
+ } /* end for */
+
+ /* set up hyperslabs for source and destination datasets */
+ start[0] = 0;
+ start[1] = 0;
+ start[2] = 0;
+ if(H5Sselect_hyperslab(src_sid, H5S_SELECT_SET, start, NULL,
+ UC_5_SOURCE_MAX_DIMS, NULL) < 0)
+ UC_ERROR
+ start[0] = map_start;
+ if(H5Sselect_hyperslab(vds_sid, H5S_SELECT_SET, start, stride,
+ count, UC_5_PLANE) < 0)
+ UC_ERROR
+ map_start += 1;
+
+ /* Add VDS mapping */
+ if(H5Pset_virtual(vds_dcplid, vds_sid, UC_5_FILE_NAMES[i],
+ UC_5_SOURCE_DSET_PATH, src_sid) < 0)
+ UC_ERROR
+
+ /* close */
+ if(H5Sclose(msid) < 0)
+ UC_ERROR
+ if(H5Sclose(fsid) < 0)
+ UC_ERROR
+ if(H5Sclose(src_sid) < 0)
+ UC_ERROR
+ if(H5Pclose(src_dcplid) < 0)
+ UC_ERROR
+ if(H5Dclose(did) < 0)
+ UC_ERROR
+ if(H5Fclose(fid) < 0)
+ UC_ERROR
+ free(buffer);
+
+ } /* end for */
+
+ /*******************
+ * Create VDS file *
+ *******************/
+
+ /* file */
+ if((fid = H5Fcreate(UC_5_VDS_FILE_NAME, H5F_ACC_TRUNC,
+ H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* dataset */
+ if((did = H5Dcreate2(fid, UC_5_VDS_DSET_NAME, UC_5_VDS_DATATYPE, vds_sid,
+ H5P_DEFAULT, vds_dcplid, H5P_DEFAULT)) < 0)
+ UC_ERROR
+
+ /* close */
+ if(H5Pclose(vds_dcplid) < 0)
+ UC_ERROR
+ if(H5Sclose(vds_sid) < 0)
+ UC_ERROR
+ if(H5Dclose(did) < 0)
+ UC_ERROR
+ if(H5Fclose(fid) < 0)
+ UC_ERROR
+
+ return EXIT_SUCCESS;
+
+error:
+
+ H5E_BEGIN_TRY {
+ if(src_sid >= 0)
+ (void)H5Sclose(src_sid);
+ if(src_dcplid >= 0)
+ (void)H5Pclose(src_dcplid);
+ if(vds_sid >= 0)
+ (void)H5Sclose(vds_sid);
+ if(vds_dcplid >= 0)
+ (void)H5Pclose(vds_dcplid);
+ if(fid >= 0)
+ (void)H5Fclose(fid);
+ if(did >= 0)
+ (void)H5Dclose(did);
+ if(msid >= 0)
+ (void)H5Sclose(msid);
+ if(fsid >= 0)
+ (void)H5Sclose(fsid);
+ if(buffer != NULL)
+ free(buffer);
+ } H5E_END_TRY
+
+ return EXIT_FAILURE;
+
+} /* end main() */
+
diff --git a/tools/misc/vds/UC_common.h b/tools/misc/vds/UC_common.h
new file mode 100644
index 0000000..0e61016
--- /dev/null
+++ b/tools/misc/vds/UC_common.h
@@ -0,0 +1,41 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef USE_CASE_COMMON_H
+#define USE_CASE_COMMON_H
+
+/******************************************
+ * Symbols used across multiple use cases *
+ ******************************************/
+
+/* All datasets are 3D */
+#define RANK 3
+
+/* Lengths of string identifiers (file, dataset names, etc.) */
+#define NAME_LEN 32
+
+/* Compression level */
+#define COMPRESSION_LEVEL 7
+
+/* Booleans */
+#define TRUE 1
+#define FALSE 0
+
+/* Testing macros */
+#define AT() printf (" at %s:%d in %s()...\n", __FILE__, __LINE__, __func__);
+#define UC_ERROR {puts("*ERROR*"); fflush(stdout); AT(); goto error;}
+
+#endif /* USE_CASE_COMMON_H */
+
diff --git a/tools/testfiles/vds/1_a.h5 b/tools/testfiles/vds/1_a.h5
new file mode 100644
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+++ b/tools/testfiles/vds/1_a.h5
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diff --git a/tools/testfiles/vds/1_b.h5 b/tools/testfiles/vds/1_b.h5
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+++ b/tools/testfiles/vds/1_b.h5
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diff --git a/tools/testfiles/vds/1_c.h5 b/tools/testfiles/vds/1_c.h5
new file mode 100644
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--- /dev/null
+++ b/tools/testfiles/vds/1_c.h5
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diff --git a/tools/testfiles/vds/1_d.h5 b/tools/testfiles/vds/1_d.h5
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diff --git a/tools/testfiles/vds/1_f.h5 b/tools/testfiles/vds/1_f.h5
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diff --git a/tools/testfiles/vds/2_a.h5 b/tools/testfiles/vds/2_a.h5
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--- /dev/null
+++ b/tools/testfiles/vds/2_a.h5
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+++ b/tools/testfiles/vds/2_b.h5
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diff --git a/tools/testfiles/vds/2_c.h5 b/tools/testfiles/vds/2_c.h5
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--- /dev/null
+++ b/tools/testfiles/vds/2_c.h5
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+++ b/tools/testfiles/vds/2_vds.h5
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diff --git a/tools/testfiles/vds/3_1_vds.h5 b/tools/testfiles/vds/3_1_vds.h5
new file mode 100644
index 0000000..9661907
--- /dev/null
+++ b/tools/testfiles/vds/3_1_vds.h5
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diff --git a/tools/testfiles/vds/3_2_vds.h5 b/tools/testfiles/vds/3_2_vds.h5
new file mode 100644
index 0000000..c39fee4
--- /dev/null
+++ b/tools/testfiles/vds/3_2_vds.h5
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diff --git a/tools/testfiles/vds/4_0.h5 b/tools/testfiles/vds/4_0.h5
new file mode 100644
index 0000000..3f5b594
--- /dev/null
+++ b/tools/testfiles/vds/4_0.h5
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diff --git a/tools/testfiles/vds/4_1.h5 b/tools/testfiles/vds/4_1.h5
new file mode 100644
index 0000000..0b91398
--- /dev/null
+++ b/tools/testfiles/vds/4_1.h5
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diff --git a/tools/testfiles/vds/4_2.h5 b/tools/testfiles/vds/4_2.h5
new file mode 100644
index 0000000..0ea8f8e
--- /dev/null
+++ b/tools/testfiles/vds/4_2.h5
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diff --git a/tools/testfiles/vds/4_vds.h5 b/tools/testfiles/vds/4_vds.h5
new file mode 100644
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--- /dev/null
+++ b/tools/testfiles/vds/4_vds.h5
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diff --git a/tools/testfiles/vds/5_a.h5 b/tools/testfiles/vds/5_a.h5
new file mode 100644
index 0000000..189e3b1
--- /dev/null
+++ b/tools/testfiles/vds/5_a.h5
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diff --git a/tools/testfiles/vds/5_b.h5 b/tools/testfiles/vds/5_b.h5
new file mode 100644
index 0000000..49b85ac
--- /dev/null
+++ b/tools/testfiles/vds/5_b.h5
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diff --git a/tools/testfiles/vds/5_c.h5 b/tools/testfiles/vds/5_c.h5
new file mode 100644
index 0000000..5ea371e
--- /dev/null
+++ b/tools/testfiles/vds/5_c.h5
Binary files differ
diff --git a/tools/testfiles/vds/5_vds.h5 b/tools/testfiles/vds/5_vds.h5
new file mode 100644
index 0000000..bee4974
--- /dev/null
+++ b/tools/testfiles/vds/5_vds.h5
Binary files differ
diff --git a/tools/testfiles/vds/tvds-1.ddl b/tools/testfiles/vds/tvds-1.ddl
new file mode 100644
index 0000000..47fd413
--- /dev/null
+++ b/tools/testfiles/vds/tvds-1.ddl
@@ -0,0 +1,100 @@
+HDF5 "1_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 5, 18, 8 ) / ( H5S_UNLIMITED, 18, 8 ) }
+ DATA {
+ (0,0,0): 10, 10, 10, 10, 10, 10, 10, 10,
+ (0,1,0): 10, 10, 10, 10, 10, 10, 10, 10,
+ (0,2,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,3,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,4,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,5,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,6,0): 30, 30, 30, 30, 30, 30, 30, 30,
+ (0,7,0): 30, 30, 30, 30, 30, 30, 30, 30,
+ (0,8,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,9,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,10,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,11,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,12,0): 50, 50, 50, 50, 50, 50, 50, 50,
+ (0,13,0): 50, 50, 50, 50, 50, 50, 50, 50,
+ (0,14,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,15,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,16,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,17,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (1,0,0): 11, 11, 11, 11, 11, 11, 11, 11,
+ (1,1,0): 11, 11, 11, 11, 11, 11, 11, 11,
+ (1,2,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,3,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,4,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,5,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,6,0): 31, 31, 31, 31, 31, 31, 31, 31,
+ (1,7,0): 31, 31, 31, 31, 31, 31, 31, 31,
+ (1,8,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,9,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,10,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,11,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,12,0): 51, 51, 51, 51, 51, 51, 51, 51,
+ (1,13,0): 51, 51, 51, 51, 51, 51, 51, 51,
+ (1,14,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,15,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,16,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,17,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (2,0,0): 12, 12, 12, 12, 12, 12, 12, 12,
+ (2,1,0): 12, 12, 12, 12, 12, 12, 12, 12,
+ (2,2,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,3,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,4,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,5,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,6,0): 32, 32, 32, 32, 32, 32, 32, 32,
+ (2,7,0): 32, 32, 32, 32, 32, 32, 32, 32,
+ (2,8,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,9,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,10,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,11,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,12,0): 52, 52, 52, 52, 52, 52, 52, 52,
+ (2,13,0): 52, 52, 52, 52, 52, 52, 52, 52,
+ (2,14,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,15,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,16,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,17,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (3,0,0): 13, 13, 13, 13, 13, 13, 13, 13,
+ (3,1,0): 13, 13, 13, 13, 13, 13, 13, 13,
+ (3,2,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,3,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,4,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,5,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,6,0): 33, 33, 33, 33, 33, 33, 33, 33,
+ (3,7,0): 33, 33, 33, 33, 33, 33, 33, 33,
+ (3,8,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,9,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,10,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,11,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,12,0): 53, 53, 53, 53, 53, 53, 53, 53,
+ (3,13,0): 53, 53, 53, 53, 53, 53, 53, 53,
+ (3,14,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,15,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,16,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,17,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (4,0,0): 14, 14, 14, 14, 14, 14, 14, 14,
+ (4,1,0): 14, 14, 14, 14, 14, 14, 14, 14,
+ (4,2,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,3,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,4,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,5,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,6,0): 34, 34, 34, 34, 34, 34, 34, 34,
+ (4,7,0): 34, 34, 34, 34, 34, 34, 34, 34,
+ (4,8,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,9,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,10,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,11,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,12,0): 54, 54, 54, 54, 54, 54, 54, 54,
+ (4,13,0): 54, 54, 54, 54, 54, 54, 54, 54,
+ (4,14,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,15,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,16,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,17,0): 64, 64, 64, 64, 64, 64, 64, 64
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds-1.ls b/tools/testfiles/vds/tvds-1.ls
new file mode 100644
index 0000000..61c9e46
--- /dev/null
+++ b/tools/testfiles/vds/tvds-1.ls
@@ -0,0 +1,14 @@
+Opened "1_vds.h5" with sec2 driver.
+vds_dset Dataset {5/Inf, 18/18, 8/8}
+ Location: 1:800
+ Links: 1
+ Maps: {6} Source {
+ 1_a.h5 /source_dset
+ 1_b.h5 /source_dset
+ 1_c.h5 /source_dset
+ 1_d.h5 /source_dset
+ 1_e.h5 /source_dset
+ 1_f.h5 /source_dset
+ }
+ Storage: 2880 logical bytes, 0 allocated bytes
+ Type: 32-bit little-endian integer
diff --git a/tools/testfiles/vds/tvds-2.ddl b/tools/testfiles/vds/tvds-2.ddl
new file mode 100644
index 0000000..5f2ae16
--- /dev/null
+++ b/tools/testfiles/vds/tvds-2.ddl
@@ -0,0 +1,58 @@
+HDF5 "2_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6, 8, 14 ) / ( H5S_UNLIMITED, 8, 14 ) }
+ DATA {
+ (0,0,0): 10, 10, 10, 10, 10, 10, 10, 40, 40, 40, 40, 40, 40, 40,
+ (0,1,0): 10, 10, 10, 10, 10, 10, 10, 40, 40, 40, 40, 40, 40, 40,
+ (0,2,0): 20, 20, 20, 20, 20, 20, 20, 40, 40, 40, 40, 40, 40, 40,
+ (0,3,0): 20, 20, 20, 20, 20, 20, 20, 40, 40, 40, 40, 40, 40, 40,
+ (0,4,0): 20, 20, 20, 20, 20, 20, 20, 40, 40, 40, 40, 40, 40, 40,
+ (0,5,0): 20, 20, 20, 20, 20, 20, 20, 50, 50, 50, 50, 50, 50, 50,
+ (0,6,0): 30, 30, 30, 30, 30, 30, 30, 50, 50, 50, 50, 50, 50, 50,
+ (0,7,0): 30, 30, 30, 30, 30, 30, 30, 50, 50, 50, 50, 50, 50, 50,
+ (1,0,0): 11, 11, 11, 11, 11, 11, 11, 41, 41, 41, 41, 41, 41, 41,
+ (1,1,0): 11, 11, 11, 11, 11, 11, 11, 41, 41, 41, 41, 41, 41, 41,
+ (1,2,0): 21, 21, 21, 21, 21, 21, 21, 41, 41, 41, 41, 41, 41, 41,
+ (1,3,0): 21, 21, 21, 21, 21, 21, 21, 41, 41, 41, 41, 41, 41, 41,
+ (1,4,0): 21, 21, 21, 21, 21, 21, 21, 41, 41, 41, 41, 41, 41, 41,
+ (1,5,0): 21, 21, 21, 21, 21, 21, 21, 51, 51, 51, 51, 51, 51, 51,
+ (1,6,0): 31, 31, 31, 31, 31, 31, 31, 51, 51, 51, 51, 51, 51, 51,
+ (1,7,0): 31, 31, 31, 31, 31, 31, 31, 51, 51, 51, 51, 51, 51, 51,
+ (2,0,0): 12, 12, 12, 12, 12, 12, 12, 42, 42, 42, 42, 42, 42, 42,
+ (2,1,0): 12, 12, 12, 12, 12, 12, 12, 42, 42, 42, 42, 42, 42, 42,
+ (2,2,0): 22, 22, 22, 22, 22, 22, 22, 42, 42, 42, 42, 42, 42, 42,
+ (2,3,0): 22, 22, 22, 22, 22, 22, 22, 42, 42, 42, 42, 42, 42, 42,
+ (2,4,0): 22, 22, 22, 22, 22, 22, 22, 42, 42, 42, 42, 42, 42, 42,
+ (2,5,0): 22, 22, 22, 22, 22, 22, 22, 52, 52, 52, 52, 52, 52, 52,
+ (2,6,0): 32, 32, 32, 32, 32, 32, 32, 52, 52, 52, 52, 52, 52, 52,
+ (2,7,0): 32, 32, 32, 32, 32, 32, 32, 52, 52, 52, 52, 52, 52, 52,
+ (3,0,0): 13, 13, 13, 13, 13, 13, 13, 43, 43, 43, 43, 43, 43, 43,
+ (3,1,0): 13, 13, 13, 13, 13, 13, 13, 43, 43, 43, 43, 43, 43, 43,
+ (3,2,0): 23, 23, 23, 23, 23, 23, 23, 43, 43, 43, 43, 43, 43, 43,
+ (3,3,0): 23, 23, 23, 23, 23, 23, 23, 43, 43, 43, 43, 43, 43, 43,
+ (3,4,0): 23, 23, 23, 23, 23, 23, 23, 43, 43, 43, 43, 43, 43, 43,
+ (3,5,0): 23, 23, 23, 23, 23, 23, 23, 53, 53, 53, 53, 53, 53, 53,
+ (3,6,0): 33, 33, 33, 33, 33, 33, 33, 53, 53, 53, 53, 53, 53, 53,
+ (3,7,0): 33, 33, 33, 33, 33, 33, 33, 53, 53, 53, 53, 53, 53, 53,
+ (4,0,0): 14, 14, 14, 14, 14, 14, 14, 44, 44, 44, 44, 44, 44, 44,
+ (4,1,0): 14, 14, 14, 14, 14, 14, 14, 44, 44, 44, 44, 44, 44, 44,
+ (4,2,0): 24, 24, 24, 24, 24, 24, 24, 44, 44, 44, 44, 44, 44, 44,
+ (4,3,0): 24, 24, 24, 24, 24, 24, 24, 44, 44, 44, 44, 44, 44, 44,
+ (4,4,0): 24, 24, 24, 24, 24, 24, 24, 44, 44, 44, 44, 44, 44, 44,
+ (4,5,0): 24, 24, 24, 24, 24, 24, 24, 54, 54, 54, 54, 54, 54, 54,
+ (4,6,0): 34, 34, 34, 34, 34, 34, 34, 54, 54, 54, 54, 54, 54, 54,
+ (4,7,0): 34, 34, 34, 34, 34, 34, 34, 54, 54, 54, 54, 54, 54, 54,
+ (5,0,0): 15, 15, 15, 15, 15, 15, 15, 45, 45, 45, 45, 45, 45, 45,
+ (5,1,0): 15, 15, 15, 15, 15, 15, 15, 45, 45, 45, 45, 45, 45, 45,
+ (5,2,0): 25, 25, 25, 25, 25, 25, 25, 45, 45, 45, 45, 45, 45, 45,
+ (5,3,0): 25, 25, 25, 25, 25, 25, 25, 45, 45, 45, 45, 45, 45, 45,
+ (5,4,0): 25, 25, 25, 25, 25, 25, 25, 45, 45, 45, 45, 45, 45, 45,
+ (5,5,0): 25, 25, 25, 25, 25, 25, 25, 55, 55, 55, 55, 55, 55, 55,
+ (5,6,0): 35, 35, 35, 35, 35, 35, 35, 55, 55, 55, 55, 55, 55, 55,
+ (5,7,0): 35, 35, 35, 35, 35, 35, 35, 55, 55, 55, 55, 55, 55, 55
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds-2.ls b/tools/testfiles/vds/tvds-2.ls
new file mode 100644
index 0000000..49fe05f
--- /dev/null
+++ b/tools/testfiles/vds/tvds-2.ls
@@ -0,0 +1,13 @@
+Opened "2_vds.h5" with sec2 driver.
+vds_dset Dataset {6/Inf, 8/8, 14/14}
+ Location: 1:800
+ Links: 1
+ Maps: {5} Source {
+ 2_a.h5 /source_dset
+ 2_b.h5 /source_dset
+ 2_c.h5 /source_dset
+ 2_d.h5 /source_dset
+ 2_e.h5 /source_dset
+ }
+ Storage: 2688 logical bytes, 0 allocated bytes
+ Type: 32-bit little-endian integer
diff --git a/tools/testfiles/vds/tvds-3_1.ddl b/tools/testfiles/vds/tvds-3_1.ddl
new file mode 100644
index 0000000..7d7d8b6
--- /dev/null
+++ b/tools/testfiles/vds/tvds-3_1.ddl
@@ -0,0 +1,135 @@
+HDF5 "3_1_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 5, 25, 8 ) / ( H5S_UNLIMITED, 25, 8 ) }
+ DATA {
+ (0,0,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,1,0): 10, 10, 10, 10, 10, 10, 10, 10,
+ (0,2,0): 10, 10, 10, 10, 10, 10, 10, 10,
+ (0,3,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,4,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,5,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,6,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,7,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,8,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,9,0): 30, 30, 30, 30, 30, 30, 30, 30,
+ (0,10,0): 30, 30, 30, 30, 30, 30, 30, 30,
+ (0,11,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,12,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,13,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,14,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,15,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,16,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,17,0): 50, 50, 50, 50, 50, 50, 50, 50,
+ (0,18,0): 50, 50, 50, 50, 50, 50, 50, 50,
+ (0,19,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,20,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,21,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,22,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,23,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,24,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,0,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,1,0): 11, 11, 11, 11, 11, 11, 11, 11,
+ (1,2,0): 11, 11, 11, 11, 11, 11, 11, 11,
+ (1,3,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,4,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,5,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,6,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,7,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,8,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,9,0): 31, 31, 31, 31, 31, 31, 31, 31,
+ (1,10,0): 31, 31, 31, 31, 31, 31, 31, 31,
+ (1,11,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,12,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,13,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,14,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,15,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,16,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,17,0): 51, 51, 51, 51, 51, 51, 51, 51,
+ (1,18,0): 51, 51, 51, 51, 51, 51, 51, 51,
+ (1,19,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,20,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,21,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,22,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,23,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,24,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,0,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,1,0): 12, 12, 12, 12, 12, 12, 12, 12,
+ (2,2,0): 12, 12, 12, 12, 12, 12, 12, 12,
+ (2,3,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,4,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,5,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,6,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,7,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,8,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,9,0): 32, 32, 32, 32, 32, 32, 32, 32,
+ (2,10,0): 32, 32, 32, 32, 32, 32, 32, 32,
+ (2,11,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,12,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,13,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,14,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,15,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,16,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,17,0): 52, 52, 52, 52, 52, 52, 52, 52,
+ (2,18,0): 52, 52, 52, 52, 52, 52, 52, 52,
+ (2,19,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,20,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,21,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,22,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,23,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,24,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,0,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,1,0): 13, 13, 13, 13, 13, 13, 13, 13,
+ (3,2,0): 13, 13, 13, 13, 13, 13, 13, 13,
+ (3,3,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,4,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,5,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,6,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,7,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,8,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,9,0): 33, 33, 33, 33, 33, 33, 33, 33,
+ (3,10,0): 33, 33, 33, 33, 33, 33, 33, 33,
+ (3,11,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,12,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,13,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,14,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,15,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,16,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,17,0): 53, 53, 53, 53, 53, 53, 53, 53,
+ (3,18,0): 53, 53, 53, 53, 53, 53, 53, 53,
+ (3,19,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,20,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,21,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,22,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,23,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,24,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,0,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,1,0): 14, 14, 14, 14, 14, 14, 14, 14,
+ (4,2,0): 14, 14, 14, 14, 14, 14, 14, 14,
+ (4,3,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,4,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,5,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,6,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,7,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,8,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,9,0): 34, 34, 34, 34, 34, 34, 34, 34,
+ (4,10,0): 34, 34, 34, 34, 34, 34, 34, 34,
+ (4,11,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,12,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,13,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,14,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,15,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,16,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,17,0): 54, 54, 54, 54, 54, 54, 54, 54,
+ (4,18,0): 54, 54, 54, 54, 54, 54, 54, 54,
+ (4,19,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,20,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,21,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,22,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,23,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,24,0): -9, -9, -9, -9, -9, -9, -9, -9
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds-3_1.ls b/tools/testfiles/vds/tvds-3_1.ls
new file mode 100644
index 0000000..fe24002
--- /dev/null
+++ b/tools/testfiles/vds/tvds-3_1.ls
@@ -0,0 +1,14 @@
+Opened "3_1_vds.h5" with sec2 driver.
+vds_dset Dataset {5/Inf, 25/25, 8/8}
+ Location: 1:800
+ Links: 1
+ Maps: {6} Source {
+ 1_a.h5 /source_dset
+ 1_b.h5 /source_dset
+ 1_c.h5 /source_dset
+ 1_d.h5 /source_dset
+ 1_e.h5 /source_dset
+ 1_f.h5 /source_dset
+ }
+ Storage: 4000 logical bytes, 0 allocated bytes
+ Type: 32-bit little-endian integer
diff --git a/tools/testfiles/vds/tvds-3_2.ddl b/tools/testfiles/vds/tvds-3_2.ddl
new file mode 100644
index 0000000..baec6f0
--- /dev/null
+++ b/tools/testfiles/vds/tvds-3_2.ddl
@@ -0,0 +1,166 @@
+HDF5 "3_2_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6, 13, 19 ) / ( H5S_UNLIMITED, 13, 19 ) }
+ DATA {
+ (0,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,0,15): -9, -9, -9, -9,
+ (0,1,0): -9, 10, 10, 10, 10, 10, 10, 10, -9, 40, 40, 40, 40, 40, 40,
+ (0,1,15): 40, -9, -9, -9,
+ (0,2,0): -9, 10, 10, 10, 10, 10, 10, 10, -9, 40, 40, 40, 40, 40, 40,
+ (0,2,15): 40, -9, -9, -9,
+ (0,3,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, 40, 40, 40, 40, 40, 40,
+ (0,3,15): 40, -9, -9, -9,
+ (0,4,0): 20, 20, 20, 20, 20, 20, 20, -9, -9, 40, 40, 40, 40, 40, 40,
+ (0,4,15): 40, -9, -9, -9,
+ (0,5,0): 20, 20, 20, 20, 20, 20, 20, -9, -9, 40, 40, 40, 40, 40, 40,
+ (0,5,15): 40, -9, -9, -9,
+ (0,6,0): 20, 20, 20, 20, 20, 20, 20, -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,6,15): -9, -9, -9, -9,
+ (0,7,0): 20, 20, 20, 20, 20, 20, 20, -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,7,15): -9, -9, -9, -9,
+ (0,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 50, 50, 50,
+ (0,8,15): 50, 50, 50, 50,
+ (0,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 50, 50, 50,
+ (0,9,15): 50, 50, 50, 50,
+ (0,10,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 50, 50, 50,
+ (0,10,15): 50, 50, 50, 50,
+ (0,11,0): -9, -9, -9, -9, 30, 30, 30, 30, 30, 30, 30, -9, -9, -9, -9,
+ (0,11,15): -9, -9, -9, -9,
+ (0,12,0): -9, -9, -9, -9, 30, 30, 30, 30, 30, 30, 30, -9, -9, -9, -9,
+ (0,12,15): -9, -9, -9, -9,
+ (1,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,0,15): -9, -9, -9, -9,
+ (1,1,0): -9, 11, 11, 11, 11, 11, 11, 11, -9, 41, 41, 41, 41, 41, 41,
+ (1,1,15): 41, -9, -9, -9,
+ (1,2,0): -9, 11, 11, 11, 11, 11, 11, 11, -9, 41, 41, 41, 41, 41, 41,
+ (1,2,15): 41, -9, -9, -9,
+ (1,3,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, 41, 41, 41, 41, 41, 41,
+ (1,3,15): 41, -9, -9, -9,
+ (1,4,0): 21, 21, 21, 21, 21, 21, 21, -9, -9, 41, 41, 41, 41, 41, 41,
+ (1,4,15): 41, -9, -9, -9,
+ (1,5,0): 21, 21, 21, 21, 21, 21, 21, -9, -9, 41, 41, 41, 41, 41, 41,
+ (1,5,15): 41, -9, -9, -9,
+ (1,6,0): 21, 21, 21, 21, 21, 21, 21, -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,6,15): -9, -9, -9, -9,
+ (1,7,0): 21, 21, 21, 21, 21, 21, 21, -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,7,15): -9, -9, -9, -9,
+ (1,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 51, 51, 51,
+ (1,8,15): 51, 51, 51, 51,
+ (1,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 51, 51, 51,
+ (1,9,15): 51, 51, 51, 51,
+ (1,10,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 51, 51, 51,
+ (1,10,15): 51, 51, 51, 51,
+ (1,11,0): -9, -9, -9, -9, 31, 31, 31, 31, 31, 31, 31, -9, -9, -9, -9,
+ (1,11,15): -9, -9, -9, -9,
+ (1,12,0): -9, -9, -9, -9, 31, 31, 31, 31, 31, 31, 31, -9, -9, -9, -9,
+ (1,12,15): -9, -9, -9, -9,
+ (2,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,0,15): -9, -9, -9, -9,
+ (2,1,0): -9, 12, 12, 12, 12, 12, 12, 12, -9, 42, 42, 42, 42, 42, 42,
+ (2,1,15): 42, -9, -9, -9,
+ (2,2,0): -9, 12, 12, 12, 12, 12, 12, 12, -9, 42, 42, 42, 42, 42, 42,
+ (2,2,15): 42, -9, -9, -9,
+ (2,3,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, 42, 42, 42, 42, 42, 42,
+ (2,3,15): 42, -9, -9, -9,
+ (2,4,0): 22, 22, 22, 22, 22, 22, 22, -9, -9, 42, 42, 42, 42, 42, 42,
+ (2,4,15): 42, -9, -9, -9,
+ (2,5,0): 22, 22, 22, 22, 22, 22, 22, -9, -9, 42, 42, 42, 42, 42, 42,
+ (2,5,15): 42, -9, -9, -9,
+ (2,6,0): 22, 22, 22, 22, 22, 22, 22, -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,6,15): -9, -9, -9, -9,
+ (2,7,0): 22, 22, 22, 22, 22, 22, 22, -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,7,15): -9, -9, -9, -9,
+ (2,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 52, 52, 52,
+ (2,8,15): 52, 52, 52, 52,
+ (2,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 52, 52, 52,
+ (2,9,15): 52, 52, 52, 52,
+ (2,10,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 52, 52, 52,
+ (2,10,15): 52, 52, 52, 52,
+ (2,11,0): -9, -9, -9, -9, 32, 32, 32, 32, 32, 32, 32, -9, -9, -9, -9,
+ (2,11,15): -9, -9, -9, -9,
+ (2,12,0): -9, -9, -9, -9, 32, 32, 32, 32, 32, 32, 32, -9, -9, -9, -9,
+ (2,12,15): -9, -9, -9, -9,
+ (3,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,0,15): -9, -9, -9, -9,
+ (3,1,0): -9, 13, 13, 13, 13, 13, 13, 13, -9, 43, 43, 43, 43, 43, 43,
+ (3,1,15): 43, -9, -9, -9,
+ (3,2,0): -9, 13, 13, 13, 13, 13, 13, 13, -9, 43, 43, 43, 43, 43, 43,
+ (3,2,15): 43, -9, -9, -9,
+ (3,3,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, 43, 43, 43, 43, 43, 43,
+ (3,3,15): 43, -9, -9, -9,
+ (3,4,0): 23, 23, 23, 23, 23, 23, 23, -9, -9, 43, 43, 43, 43, 43, 43,
+ (3,4,15): 43, -9, -9, -9,
+ (3,5,0): 23, 23, 23, 23, 23, 23, 23, -9, -9, 43, 43, 43, 43, 43, 43,
+ (3,5,15): 43, -9, -9, -9,
+ (3,6,0): 23, 23, 23, 23, 23, 23, 23, -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,6,15): -9, -9, -9, -9,
+ (3,7,0): 23, 23, 23, 23, 23, 23, 23, -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,7,15): -9, -9, -9, -9,
+ (3,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 53, 53, 53,
+ (3,8,15): 53, 53, 53, 53,
+ (3,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 53, 53, 53,
+ (3,9,15): 53, 53, 53, 53,
+ (3,10,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 53, 53, 53,
+ (3,10,15): 53, 53, 53, 53,
+ (3,11,0): -9, -9, -9, -9, 33, 33, 33, 33, 33, 33, 33, -9, -9, -9, -9,
+ (3,11,15): -9, -9, -9, -9,
+ (3,12,0): -9, -9, -9, -9, 33, 33, 33, 33, 33, 33, 33, -9, -9, -9, -9,
+ (3,12,15): -9, -9, -9, -9,
+ (4,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,0,15): -9, -9, -9, -9,
+ (4,1,0): -9, 14, 14, 14, 14, 14, 14, 14, -9, 44, 44, 44, 44, 44, 44,
+ (4,1,15): 44, -9, -9, -9,
+ (4,2,0): -9, 14, 14, 14, 14, 14, 14, 14, -9, 44, 44, 44, 44, 44, 44,
+ (4,2,15): 44, -9, -9, -9,
+ (4,3,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, 44, 44, 44, 44, 44, 44,
+ (4,3,15): 44, -9, -9, -9,
+ (4,4,0): 24, 24, 24, 24, 24, 24, 24, -9, -9, 44, 44, 44, 44, 44, 44,
+ (4,4,15): 44, -9, -9, -9,
+ (4,5,0): 24, 24, 24, 24, 24, 24, 24, -9, -9, 44, 44, 44, 44, 44, 44,
+ (4,5,15): 44, -9, -9, -9,
+ (4,6,0): 24, 24, 24, 24, 24, 24, 24, -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,6,15): -9, -9, -9, -9,
+ (4,7,0): 24, 24, 24, 24, 24, 24, 24, -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,7,15): -9, -9, -9, -9,
+ (4,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 54, 54, 54,
+ (4,8,15): 54, 54, 54, 54,
+ (4,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 54, 54, 54,
+ (4,9,15): 54, 54, 54, 54,
+ (4,10,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 54, 54, 54,
+ (4,10,15): 54, 54, 54, 54,
+ (4,11,0): -9, -9, -9, -9, 34, 34, 34, 34, 34, 34, 34, -9, -9, -9, -9,
+ (4,11,15): -9, -9, -9, -9,
+ (4,12,0): -9, -9, -9, -9, 34, 34, 34, 34, 34, 34, 34, -9, -9, -9, -9,
+ (4,12,15): -9, -9, -9, -9,
+ (5,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9,
+ (5,0,15): -9, -9, -9, -9,
+ (5,1,0): -9, 15, 15, 15, 15, 15, 15, 15, -9, 45, 45, 45, 45, 45, 45,
+ (5,1,15): 45, -9, -9, -9,
+ (5,2,0): -9, 15, 15, 15, 15, 15, 15, 15, -9, 45, 45, 45, 45, 45, 45,
+ (5,2,15): 45, -9, -9, -9,
+ (5,3,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, 45, 45, 45, 45, 45, 45,
+ (5,3,15): 45, -9, -9, -9,
+ (5,4,0): 25, 25, 25, 25, 25, 25, 25, -9, -9, 45, 45, 45, 45, 45, 45,
+ (5,4,15): 45, -9, -9, -9,
+ (5,5,0): 25, 25, 25, 25, 25, 25, 25, -9, -9, 45, 45, 45, 45, 45, 45,
+ (5,5,15): 45, -9, -9, -9,
+ (5,6,0): 25, 25, 25, 25, 25, 25, 25, -9, -9, -9, -9, -9, -9, -9, -9,
+ (5,6,15): -9, -9, -9, -9,
+ (5,7,0): 25, 25, 25, 25, 25, 25, 25, -9, -9, -9, -9, -9, -9, -9, -9,
+ (5,7,15): -9, -9, -9, -9,
+ (5,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 55, 55, 55,
+ (5,8,15): 55, 55, 55, 55,
+ (5,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 55, 55, 55,
+ (5,9,15): 55, 55, 55, 55,
+ (5,10,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 55, 55, 55,
+ (5,10,15): 55, 55, 55, 55,
+ (5,11,0): -9, -9, -9, -9, 35, 35, 35, 35, 35, 35, 35, -9, -9, -9, -9,
+ (5,11,15): -9, -9, -9, -9,
+ (5,12,0): -9, -9, -9, -9, 35, 35, 35, 35, 35, 35, 35, -9, -9, -9, -9,
+ (5,12,15): -9, -9, -9, -9
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds-3_2.ls b/tools/testfiles/vds/tvds-3_2.ls
new file mode 100644
index 0000000..a4ad84f
--- /dev/null
+++ b/tools/testfiles/vds/tvds-3_2.ls
@@ -0,0 +1,13 @@
+Opened "3_2_vds.h5" with sec2 driver.
+vds_dset Dataset {6/Inf, 13/13, 19/19}
+ Location: 1:800
+ Links: 1
+ Maps: {5} Source {
+ 2_a.h5 /source_dset
+ 2_b.h5 /source_dset
+ 2_c.h5 /source_dset
+ 2_d.h5 /source_dset
+ 2_e.h5 /source_dset
+ }
+ Storage: 5928 logical bytes, 0 allocated bytes
+ Type: 32-bit little-endian integer
diff --git a/tools/testfiles/vds/tvds-4.ddl b/tools/testfiles/vds/tvds-4.ddl
new file mode 100644
index 0000000..1832724
--- /dev/null
+++ b/tools/testfiles/vds/tvds-4.ddl
@@ -0,0 +1,46 @@
+HDF5 "4_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 9, 4, 4 ) / ( H5S_UNLIMITED, 4, 4 ) }
+ DATA {
+ (0,0,0): 10, 10, 10, 10,
+ (0,1,0): 10, 10, 10, 10,
+ (0,2,0): 10, 10, 10, 10,
+ (0,3,0): 10, 10, 10, 10,
+ (1,0,0): 11, 11, 11, 11,
+ (1,1,0): 11, 11, 11, 11,
+ (1,2,0): 11, 11, 11, 11,
+ (1,3,0): 11, 11, 11, 11,
+ (2,0,0): 12, 12, 12, 12,
+ (2,1,0): 12, 12, 12, 12,
+ (2,2,0): 12, 12, 12, 12,
+ (2,3,0): 12, 12, 12, 12,
+ (3,0,0): 20, 20, 20, 20,
+ (3,1,0): 20, 20, 20, 20,
+ (3,2,0): 20, 20, 20, 20,
+ (3,3,0): 20, 20, 20, 20,
+ (4,0,0): 21, 21, 21, 21,
+ (4,1,0): 21, 21, 21, 21,
+ (4,2,0): 21, 21, 21, 21,
+ (4,3,0): 21, 21, 21, 21,
+ (5,0,0): 22, 22, 22, 22,
+ (5,1,0): 22, 22, 22, 22,
+ (5,2,0): 22, 22, 22, 22,
+ (5,3,0): 22, 22, 22, 22,
+ (6,0,0): 30, 30, 30, 30,
+ (6,1,0): 30, 30, 30, 30,
+ (6,2,0): 30, 30, 30, 30,
+ (6,3,0): 30, 30, 30, 30,
+ (7,0,0): 31, 31, 31, 31,
+ (7,1,0): 31, 31, 31, 31,
+ (7,2,0): 31, 31, 31, 31,
+ (7,3,0): 31, 31, 31, 31,
+ (8,0,0): 32, 32, 32, 32,
+ (8,1,0): 32, 32, 32, 32,
+ (8,2,0): 32, 32, 32, 32,
+ (8,3,0): 32, 32, 32, 32
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds-4.ls b/tools/testfiles/vds/tvds-4.ls
new file mode 100644
index 0000000..176529b
--- /dev/null
+++ b/tools/testfiles/vds/tvds-4.ls
@@ -0,0 +1,9 @@
+Opened "4_vds.h5" with sec2 driver.
+vds_dset Dataset {9/Inf, 4/4, 4/4}
+ Location: 1:800
+ Links: 1
+ Maps: {1} Source {
+ 4_%b.h5 /source_dset
+ }
+ Storage: 576 logical bytes, 0 allocated bytes
+ Type: 32-bit little-endian integer
diff --git a/tools/testfiles/vds/tvds-5.ddl b/tools/testfiles/vds/tvds-5.ddl
new file mode 100644
index 0000000..f59017b
--- /dev/null
+++ b/tools/testfiles/vds/tvds-5.ddl
@@ -0,0 +1,46 @@
+HDF5 "5_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 9, 4, 4 ) / ( H5S_UNLIMITED, 4, 4 ) }
+ DATA {
+ (0,0,0): 10, 10, 10, 10,
+ (0,1,0): 10, 10, 10, 10,
+ (0,2,0): 10, 10, 10, 10,
+ (0,3,0): 10, 10, 10, 10,
+ (1,0,0): 20, 20, 20, 20,
+ (1,1,0): 20, 20, 20, 20,
+ (1,2,0): 20, 20, 20, 20,
+ (1,3,0): 20, 20, 20, 20,
+ (2,0,0): 30, 30, 30, 30,
+ (2,1,0): 30, 30, 30, 30,
+ (2,2,0): 30, 30, 30, 30,
+ (2,3,0): 30, 30, 30, 30,
+ (3,0,0): 11, 11, 11, 11,
+ (3,1,0): 11, 11, 11, 11,
+ (3,2,0): 11, 11, 11, 11,
+ (3,3,0): 11, 11, 11, 11,
+ (4,0,0): 21, 21, 21, 21,
+ (4,1,0): 21, 21, 21, 21,
+ (4,2,0): 21, 21, 21, 21,
+ (4,3,0): 21, 21, 21, 21,
+ (5,0,0): 31, 31, 31, 31,
+ (5,1,0): 31, 31, 31, 31,
+ (5,2,0): 31, 31, 31, 31,
+ (5,3,0): 31, 31, 31, 31,
+ (6,0,0): 12, 12, 12, 12,
+ (6,1,0): 12, 12, 12, 12,
+ (6,2,0): 12, 12, 12, 12,
+ (6,3,0): 12, 12, 12, 12,
+ (7,0,0): 22, 22, 22, 22,
+ (7,1,0): 22, 22, 22, 22,
+ (7,2,0): 22, 22, 22, 22,
+ (7,3,0): 22, 22, 22, 22,
+ (8,0,0): 32, 32, 32, 32,
+ (8,1,0): 32, 32, 32, 32,
+ (8,2,0): 32, 32, 32, 32,
+ (8,3,0): 32, 32, 32, 32
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds-5.ls b/tools/testfiles/vds/tvds-5.ls
new file mode 100644
index 0000000..5f98e84
--- /dev/null
+++ b/tools/testfiles/vds/tvds-5.ls
@@ -0,0 +1,11 @@
+Opened "5_vds.h5" with sec2 driver.
+vds_dset Dataset {9/Inf, 4/4, 4/4}
+ Location: 1:800
+ Links: 1
+ Maps: {3} Source {
+ 5_a.h5 /source_dset
+ 5_b.h5 /source_dset
+ 5_c.h5 /source_dset
+ }
+ Storage: 576 logical bytes, 0 allocated bytes
+ Type: 32-bit little-endian integer
diff --git a/tools/testfiles/vds/tvds_layout-1.ddl b/tools/testfiles/vds/tvds_layout-1.ddl
new file mode 100644
index 0000000..5d8a62c
--- /dev/null
+++ b/tools/testfiles/vds/tvds_layout-1.ddl
@@ -0,0 +1,232 @@
+HDF5 "1_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 5, 18, 8 ) / ( H5S_UNLIMITED, 18, 8 ) }
+ STORAGE_LAYOUT {
+ MAPPING 0 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ SOURCE {
+ FILE "1_a.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ }
+ MAPPING 1 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,2,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ SOURCE {
+ FILE "1_b.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ }
+ MAPPING 2 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,6,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ SOURCE {
+ FILE "1_c.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ }
+ MAPPING 3 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,8,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ SOURCE {
+ FILE "1_d.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ }
+ MAPPING 4 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,12,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ SOURCE {
+ FILE "1_e.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ }
+ MAPPING 5 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,14,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ SOURCE {
+ FILE "1_f.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ }
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE -9
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_INCR
+ }
+ DATA {
+ (0,0,0): 10, 10, 10, 10, 10, 10, 10, 10,
+ (0,1,0): 10, 10, 10, 10, 10, 10, 10, 10,
+ (0,2,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,3,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,4,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,5,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,6,0): 30, 30, 30, 30, 30, 30, 30, 30,
+ (0,7,0): 30, 30, 30, 30, 30, 30, 30, 30,
+ (0,8,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,9,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,10,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,11,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,12,0): 50, 50, 50, 50, 50, 50, 50, 50,
+ (0,13,0): 50, 50, 50, 50, 50, 50, 50, 50,
+ (0,14,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,15,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,16,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,17,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (1,0,0): 11, 11, 11, 11, 11, 11, 11, 11,
+ (1,1,0): 11, 11, 11, 11, 11, 11, 11, 11,
+ (1,2,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,3,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,4,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,5,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,6,0): 31, 31, 31, 31, 31, 31, 31, 31,
+ (1,7,0): 31, 31, 31, 31, 31, 31, 31, 31,
+ (1,8,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,9,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,10,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,11,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,12,0): 51, 51, 51, 51, 51, 51, 51, 51,
+ (1,13,0): 51, 51, 51, 51, 51, 51, 51, 51,
+ (1,14,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,15,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,16,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,17,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (2,0,0): 12, 12, 12, 12, 12, 12, 12, 12,
+ (2,1,0): 12, 12, 12, 12, 12, 12, 12, 12,
+ (2,2,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,3,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,4,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,5,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,6,0): 32, 32, 32, 32, 32, 32, 32, 32,
+ (2,7,0): 32, 32, 32, 32, 32, 32, 32, 32,
+ (2,8,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,9,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,10,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,11,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,12,0): 52, 52, 52, 52, 52, 52, 52, 52,
+ (2,13,0): 52, 52, 52, 52, 52, 52, 52, 52,
+ (2,14,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,15,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,16,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,17,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (3,0,0): 13, 13, 13, 13, 13, 13, 13, 13,
+ (3,1,0): 13, 13, 13, 13, 13, 13, 13, 13,
+ (3,2,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,3,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,4,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,5,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,6,0): 33, 33, 33, 33, 33, 33, 33, 33,
+ (3,7,0): 33, 33, 33, 33, 33, 33, 33, 33,
+ (3,8,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,9,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,10,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,11,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,12,0): 53, 53, 53, 53, 53, 53, 53, 53,
+ (3,13,0): 53, 53, 53, 53, 53, 53, 53, 53,
+ (3,14,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,15,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,16,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,17,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (4,0,0): 14, 14, 14, 14, 14, 14, 14, 14,
+ (4,1,0): 14, 14, 14, 14, 14, 14, 14, 14,
+ (4,2,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,3,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,4,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,5,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,6,0): 34, 34, 34, 34, 34, 34, 34, 34,
+ (4,7,0): 34, 34, 34, 34, 34, 34, 34, 34,
+ (4,8,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,9,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,10,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,11,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,12,0): 54, 54, 54, 54, 54, 54, 54, 54,
+ (4,13,0): 54, 54, 54, 54, 54, 54, 54, 54,
+ (4,14,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,15,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,16,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,17,0): 64, 64, 64, 64, 64, 64, 64, 64
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds_layout-2.ddl b/tools/testfiles/vds/tvds_layout-2.ddl
new file mode 100644
index 0000000..af6b718
--- /dev/null
+++ b/tools/testfiles/vds/tvds_layout-2.ddl
@@ -0,0 +1,170 @@
+HDF5 "2_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6, 8, 14 ) / ( H5S_UNLIMITED, 8, 14 ) }
+ STORAGE_LAYOUT {
+ MAPPING 0 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,7)
+ }
+ }
+ SOURCE {
+ FILE "2_a.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,7)
+ }
+ }
+ }
+ MAPPING 1 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,2,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,7)
+ }
+ }
+ SOURCE {
+ FILE "2_b.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,7)
+ }
+ }
+ }
+ MAPPING 2 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,6,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,7)
+ }
+ }
+ SOURCE {
+ FILE "2_c.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,7)
+ }
+ }
+ }
+ MAPPING 3 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,7)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,5,7)
+ }
+ }
+ SOURCE {
+ FILE "2_d.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,5,7)
+ }
+ }
+ }
+ MAPPING 4 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,5,7)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,3,7)
+ }
+ }
+ SOURCE {
+ FILE "2_e.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,3,7)
+ }
+ }
+ }
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE -9
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_INCR
+ }
+ DATA {
+ (0,0,0): 10, 10, 10, 10, 10, 10, 10, 40, 40, 40, 40, 40, 40, 40,
+ (0,1,0): 10, 10, 10, 10, 10, 10, 10, 40, 40, 40, 40, 40, 40, 40,
+ (0,2,0): 20, 20, 20, 20, 20, 20, 20, 40, 40, 40, 40, 40, 40, 40,
+ (0,3,0): 20, 20, 20, 20, 20, 20, 20, 40, 40, 40, 40, 40, 40, 40,
+ (0,4,0): 20, 20, 20, 20, 20, 20, 20, 40, 40, 40, 40, 40, 40, 40,
+ (0,5,0): 20, 20, 20, 20, 20, 20, 20, 50, 50, 50, 50, 50, 50, 50,
+ (0,6,0): 30, 30, 30, 30, 30, 30, 30, 50, 50, 50, 50, 50, 50, 50,
+ (0,7,0): 30, 30, 30, 30, 30, 30, 30, 50, 50, 50, 50, 50, 50, 50,
+ (1,0,0): 11, 11, 11, 11, 11, 11, 11, 41, 41, 41, 41, 41, 41, 41,
+ (1,1,0): 11, 11, 11, 11, 11, 11, 11, 41, 41, 41, 41, 41, 41, 41,
+ (1,2,0): 21, 21, 21, 21, 21, 21, 21, 41, 41, 41, 41, 41, 41, 41,
+ (1,3,0): 21, 21, 21, 21, 21, 21, 21, 41, 41, 41, 41, 41, 41, 41,
+ (1,4,0): 21, 21, 21, 21, 21, 21, 21, 41, 41, 41, 41, 41, 41, 41,
+ (1,5,0): 21, 21, 21, 21, 21, 21, 21, 51, 51, 51, 51, 51, 51, 51,
+ (1,6,0): 31, 31, 31, 31, 31, 31, 31, 51, 51, 51, 51, 51, 51, 51,
+ (1,7,0): 31, 31, 31, 31, 31, 31, 31, 51, 51, 51, 51, 51, 51, 51,
+ (2,0,0): 12, 12, 12, 12, 12, 12, 12, 42, 42, 42, 42, 42, 42, 42,
+ (2,1,0): 12, 12, 12, 12, 12, 12, 12, 42, 42, 42, 42, 42, 42, 42,
+ (2,2,0): 22, 22, 22, 22, 22, 22, 22, 42, 42, 42, 42, 42, 42, 42,
+ (2,3,0): 22, 22, 22, 22, 22, 22, 22, 42, 42, 42, 42, 42, 42, 42,
+ (2,4,0): 22, 22, 22, 22, 22, 22, 22, 42, 42, 42, 42, 42, 42, 42,
+ (2,5,0): 22, 22, 22, 22, 22, 22, 22, 52, 52, 52, 52, 52, 52, 52,
+ (2,6,0): 32, 32, 32, 32, 32, 32, 32, 52, 52, 52, 52, 52, 52, 52,
+ (2,7,0): 32, 32, 32, 32, 32, 32, 32, 52, 52, 52, 52, 52, 52, 52,
+ (3,0,0): 13, 13, 13, 13, 13, 13, 13, 43, 43, 43, 43, 43, 43, 43,
+ (3,1,0): 13, 13, 13, 13, 13, 13, 13, 43, 43, 43, 43, 43, 43, 43,
+ (3,2,0): 23, 23, 23, 23, 23, 23, 23, 43, 43, 43, 43, 43, 43, 43,
+ (3,3,0): 23, 23, 23, 23, 23, 23, 23, 43, 43, 43, 43, 43, 43, 43,
+ (3,4,0): 23, 23, 23, 23, 23, 23, 23, 43, 43, 43, 43, 43, 43, 43,
+ (3,5,0): 23, 23, 23, 23, 23, 23, 23, 53, 53, 53, 53, 53, 53, 53,
+ (3,6,0): 33, 33, 33, 33, 33, 33, 33, 53, 53, 53, 53, 53, 53, 53,
+ (3,7,0): 33, 33, 33, 33, 33, 33, 33, 53, 53, 53, 53, 53, 53, 53,
+ (4,0,0): 14, 14, 14, 14, 14, 14, 14, 44, 44, 44, 44, 44, 44, 44,
+ (4,1,0): 14, 14, 14, 14, 14, 14, 14, 44, 44, 44, 44, 44, 44, 44,
+ (4,2,0): 24, 24, 24, 24, 24, 24, 24, 44, 44, 44, 44, 44, 44, 44,
+ (4,3,0): 24, 24, 24, 24, 24, 24, 24, 44, 44, 44, 44, 44, 44, 44,
+ (4,4,0): 24, 24, 24, 24, 24, 24, 24, 44, 44, 44, 44, 44, 44, 44,
+ (4,5,0): 24, 24, 24, 24, 24, 24, 24, 54, 54, 54, 54, 54, 54, 54,
+ (4,6,0): 34, 34, 34, 34, 34, 34, 34, 54, 54, 54, 54, 54, 54, 54,
+ (4,7,0): 34, 34, 34, 34, 34, 34, 34, 54, 54, 54, 54, 54, 54, 54,
+ (5,0,0): 15, 15, 15, 15, 15, 15, 15, 45, 45, 45, 45, 45, 45, 45,
+ (5,1,0): 15, 15, 15, 15, 15, 15, 15, 45, 45, 45, 45, 45, 45, 45,
+ (5,2,0): 25, 25, 25, 25, 25, 25, 25, 45, 45, 45, 45, 45, 45, 45,
+ (5,3,0): 25, 25, 25, 25, 25, 25, 25, 45, 45, 45, 45, 45, 45, 45,
+ (5,4,0): 25, 25, 25, 25, 25, 25, 25, 45, 45, 45, 45, 45, 45, 45,
+ (5,5,0): 25, 25, 25, 25, 25, 25, 25, 55, 55, 55, 55, 55, 55, 55,
+ (5,6,0): 35, 35, 35, 35, 35, 35, 35, 55, 55, 55, 55, 55, 55, 55,
+ (5,7,0): 35, 35, 35, 35, 35, 35, 35, 55, 55, 55, 55, 55, 55, 55
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds_layout-3_1.ddl b/tools/testfiles/vds/tvds_layout-3_1.ddl
new file mode 100644
index 0000000..968327d
--- /dev/null
+++ b/tools/testfiles/vds/tvds_layout-3_1.ddl
@@ -0,0 +1,267 @@
+HDF5 "3_1_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 5, 25, 8 ) / ( H5S_UNLIMITED, 25, 8 ) }
+ STORAGE_LAYOUT {
+ MAPPING 0 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,1,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ SOURCE {
+ FILE "1_a.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ }
+ MAPPING 1 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,4,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ SOURCE {
+ FILE "1_b.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ }
+ MAPPING 2 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,9,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ SOURCE {
+ FILE "1_c.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ }
+ MAPPING 3 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,12,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ SOURCE {
+ FILE "1_d.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ }
+ MAPPING 4 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,17,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ SOURCE {
+ FILE "1_e.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,8)
+ }
+ }
+ }
+ MAPPING 5 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,20,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ SOURCE {
+ FILE "1_f.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,8)
+ }
+ }
+ }
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE -9
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_INCR
+ }
+ DATA {
+ (0,0,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,1,0): 10, 10, 10, 10, 10, 10, 10, 10,
+ (0,2,0): 10, 10, 10, 10, 10, 10, 10, 10,
+ (0,3,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,4,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,5,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,6,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,7,0): 20, 20, 20, 20, 20, 20, 20, 20,
+ (0,8,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,9,0): 30, 30, 30, 30, 30, 30, 30, 30,
+ (0,10,0): 30, 30, 30, 30, 30, 30, 30, 30,
+ (0,11,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,12,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,13,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,14,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,15,0): 40, 40, 40, 40, 40, 40, 40, 40,
+ (0,16,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,17,0): 50, 50, 50, 50, 50, 50, 50, 50,
+ (0,18,0): 50, 50, 50, 50, 50, 50, 50, 50,
+ (0,19,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,20,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,21,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,22,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,23,0): 60, 60, 60, 60, 60, 60, 60, 60,
+ (0,24,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,0,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,1,0): 11, 11, 11, 11, 11, 11, 11, 11,
+ (1,2,0): 11, 11, 11, 11, 11, 11, 11, 11,
+ (1,3,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,4,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,5,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,6,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,7,0): 21, 21, 21, 21, 21, 21, 21, 21,
+ (1,8,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,9,0): 31, 31, 31, 31, 31, 31, 31, 31,
+ (1,10,0): 31, 31, 31, 31, 31, 31, 31, 31,
+ (1,11,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,12,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,13,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,14,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,15,0): 41, 41, 41, 41, 41, 41, 41, 41,
+ (1,16,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,17,0): 51, 51, 51, 51, 51, 51, 51, 51,
+ (1,18,0): 51, 51, 51, 51, 51, 51, 51, 51,
+ (1,19,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,20,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,21,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,22,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,23,0): 61, 61, 61, 61, 61, 61, 61, 61,
+ (1,24,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,0,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,1,0): 12, 12, 12, 12, 12, 12, 12, 12,
+ (2,2,0): 12, 12, 12, 12, 12, 12, 12, 12,
+ (2,3,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,4,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,5,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,6,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,7,0): 22, 22, 22, 22, 22, 22, 22, 22,
+ (2,8,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,9,0): 32, 32, 32, 32, 32, 32, 32, 32,
+ (2,10,0): 32, 32, 32, 32, 32, 32, 32, 32,
+ (2,11,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,12,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,13,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,14,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,15,0): 42, 42, 42, 42, 42, 42, 42, 42,
+ (2,16,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,17,0): 52, 52, 52, 52, 52, 52, 52, 52,
+ (2,18,0): 52, 52, 52, 52, 52, 52, 52, 52,
+ (2,19,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,20,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,21,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,22,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,23,0): 62, 62, 62, 62, 62, 62, 62, 62,
+ (2,24,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,0,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,1,0): 13, 13, 13, 13, 13, 13, 13, 13,
+ (3,2,0): 13, 13, 13, 13, 13, 13, 13, 13,
+ (3,3,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,4,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,5,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,6,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,7,0): 23, 23, 23, 23, 23, 23, 23, 23,
+ (3,8,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,9,0): 33, 33, 33, 33, 33, 33, 33, 33,
+ (3,10,0): 33, 33, 33, 33, 33, 33, 33, 33,
+ (3,11,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,12,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,13,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,14,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,15,0): 43, 43, 43, 43, 43, 43, 43, 43,
+ (3,16,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,17,0): 53, 53, 53, 53, 53, 53, 53, 53,
+ (3,18,0): 53, 53, 53, 53, 53, 53, 53, 53,
+ (3,19,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,20,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,21,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,22,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,23,0): 63, 63, 63, 63, 63, 63, 63, 63,
+ (3,24,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,0,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,1,0): 14, 14, 14, 14, 14, 14, 14, 14,
+ (4,2,0): 14, 14, 14, 14, 14, 14, 14, 14,
+ (4,3,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,4,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,5,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,6,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,7,0): 24, 24, 24, 24, 24, 24, 24, 24,
+ (4,8,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,9,0): 34, 34, 34, 34, 34, 34, 34, 34,
+ (4,10,0): 34, 34, 34, 34, 34, 34, 34, 34,
+ (4,11,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,12,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,13,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,14,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,15,0): 44, 44, 44, 44, 44, 44, 44, 44,
+ (4,16,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,17,0): 54, 54, 54, 54, 54, 54, 54, 54,
+ (4,18,0): 54, 54, 54, 54, 54, 54, 54, 54,
+ (4,19,0): -9, -9, -9, -9, -9, -9, -9, -9,
+ (4,20,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,21,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,22,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,23,0): 64, 64, 64, 64, 64, 64, 64, 64,
+ (4,24,0): -9, -9, -9, -9, -9, -9, -9, -9
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds_layout-3_2.ddl b/tools/testfiles/vds/tvds_layout-3_2.ddl
new file mode 100644
index 0000000..7e14ec2
--- /dev/null
+++ b/tools/testfiles/vds/tvds_layout-3_2.ddl
@@ -0,0 +1,278 @@
+HDF5 "3_2_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6, 13, 19 ) / ( H5S_UNLIMITED, 13, 19 ) }
+ STORAGE_LAYOUT {
+ MAPPING 0 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,1,1)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,7)
+ }
+ }
+ SOURCE {
+ FILE "2_a.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,7)
+ }
+ }
+ }
+ MAPPING 1 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,4,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,7)
+ }
+ }
+ SOURCE {
+ FILE "2_b.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,7)
+ }
+ }
+ }
+ MAPPING 2 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,11,4)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,7)
+ }
+ }
+ SOURCE {
+ FILE "2_c.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,2,7)
+ }
+ }
+ }
+ MAPPING 3 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,1,9)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,5,7)
+ }
+ }
+ SOURCE {
+ FILE "2_d.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,5,7)
+ }
+ }
+ }
+ MAPPING 4 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,8,12)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,3,7)
+ }
+ }
+ SOURCE {
+ FILE "2_e.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,3,7)
+ }
+ }
+ }
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE -9
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_INCR
+ }
+ DATA {
+ (0,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,0,15): -9, -9, -9, -9,
+ (0,1,0): -9, 10, 10, 10, 10, 10, 10, 10, -9, 40, 40, 40, 40, 40, 40,
+ (0,1,15): 40, -9, -9, -9,
+ (0,2,0): -9, 10, 10, 10, 10, 10, 10, 10, -9, 40, 40, 40, 40, 40, 40,
+ (0,2,15): 40, -9, -9, -9,
+ (0,3,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, 40, 40, 40, 40, 40, 40,
+ (0,3,15): 40, -9, -9, -9,
+ (0,4,0): 20, 20, 20, 20, 20, 20, 20, -9, -9, 40, 40, 40, 40, 40, 40,
+ (0,4,15): 40, -9, -9, -9,
+ (0,5,0): 20, 20, 20, 20, 20, 20, 20, -9, -9, 40, 40, 40, 40, 40, 40,
+ (0,5,15): 40, -9, -9, -9,
+ (0,6,0): 20, 20, 20, 20, 20, 20, 20, -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,6,15): -9, -9, -9, -9,
+ (0,7,0): 20, 20, 20, 20, 20, 20, 20, -9, -9, -9, -9, -9, -9, -9, -9,
+ (0,7,15): -9, -9, -9, -9,
+ (0,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 50, 50, 50,
+ (0,8,15): 50, 50, 50, 50,
+ (0,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 50, 50, 50,
+ (0,9,15): 50, 50, 50, 50,
+ (0,10,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 50, 50, 50,
+ (0,10,15): 50, 50, 50, 50,
+ (0,11,0): -9, -9, -9, -9, 30, 30, 30, 30, 30, 30, 30, -9, -9, -9, -9,
+ (0,11,15): -9, -9, -9, -9,
+ (0,12,0): -9, -9, -9, -9, 30, 30, 30, 30, 30, 30, 30, -9, -9, -9, -9,
+ (0,12,15): -9, -9, -9, -9,
+ (1,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,0,15): -9, -9, -9, -9,
+ (1,1,0): -9, 11, 11, 11, 11, 11, 11, 11, -9, 41, 41, 41, 41, 41, 41,
+ (1,1,15): 41, -9, -9, -9,
+ (1,2,0): -9, 11, 11, 11, 11, 11, 11, 11, -9, 41, 41, 41, 41, 41, 41,
+ (1,2,15): 41, -9, -9, -9,
+ (1,3,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, 41, 41, 41, 41, 41, 41,
+ (1,3,15): 41, -9, -9, -9,
+ (1,4,0): 21, 21, 21, 21, 21, 21, 21, -9, -9, 41, 41, 41, 41, 41, 41,
+ (1,4,15): 41, -9, -9, -9,
+ (1,5,0): 21, 21, 21, 21, 21, 21, 21, -9, -9, 41, 41, 41, 41, 41, 41,
+ (1,5,15): 41, -9, -9, -9,
+ (1,6,0): 21, 21, 21, 21, 21, 21, 21, -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,6,15): -9, -9, -9, -9,
+ (1,7,0): 21, 21, 21, 21, 21, 21, 21, -9, -9, -9, -9, -9, -9, -9, -9,
+ (1,7,15): -9, -9, -9, -9,
+ (1,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 51, 51, 51,
+ (1,8,15): 51, 51, 51, 51,
+ (1,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 51, 51, 51,
+ (1,9,15): 51, 51, 51, 51,
+ (1,10,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 51, 51, 51,
+ (1,10,15): 51, 51, 51, 51,
+ (1,11,0): -9, -9, -9, -9, 31, 31, 31, 31, 31, 31, 31, -9, -9, -9, -9,
+ (1,11,15): -9, -9, -9, -9,
+ (1,12,0): -9, -9, -9, -9, 31, 31, 31, 31, 31, 31, 31, -9, -9, -9, -9,
+ (1,12,15): -9, -9, -9, -9,
+ (2,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,0,15): -9, -9, -9, -9,
+ (2,1,0): -9, 12, 12, 12, 12, 12, 12, 12, -9, 42, 42, 42, 42, 42, 42,
+ (2,1,15): 42, -9, -9, -9,
+ (2,2,0): -9, 12, 12, 12, 12, 12, 12, 12, -9, 42, 42, 42, 42, 42, 42,
+ (2,2,15): 42, -9, -9, -9,
+ (2,3,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, 42, 42, 42, 42, 42, 42,
+ (2,3,15): 42, -9, -9, -9,
+ (2,4,0): 22, 22, 22, 22, 22, 22, 22, -9, -9, 42, 42, 42, 42, 42, 42,
+ (2,4,15): 42, -9, -9, -9,
+ (2,5,0): 22, 22, 22, 22, 22, 22, 22, -9, -9, 42, 42, 42, 42, 42, 42,
+ (2,5,15): 42, -9, -9, -9,
+ (2,6,0): 22, 22, 22, 22, 22, 22, 22, -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,6,15): -9, -9, -9, -9,
+ (2,7,0): 22, 22, 22, 22, 22, 22, 22, -9, -9, -9, -9, -9, -9, -9, -9,
+ (2,7,15): -9, -9, -9, -9,
+ (2,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 52, 52, 52,
+ (2,8,15): 52, 52, 52, 52,
+ (2,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 52, 52, 52,
+ (2,9,15): 52, 52, 52, 52,
+ (2,10,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 52, 52, 52,
+ (2,10,15): 52, 52, 52, 52,
+ (2,11,0): -9, -9, -9, -9, 32, 32, 32, 32, 32, 32, 32, -9, -9, -9, -9,
+ (2,11,15): -9, -9, -9, -9,
+ (2,12,0): -9, -9, -9, -9, 32, 32, 32, 32, 32, 32, 32, -9, -9, -9, -9,
+ (2,12,15): -9, -9, -9, -9,
+ (3,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,0,15): -9, -9, -9, -9,
+ (3,1,0): -9, 13, 13, 13, 13, 13, 13, 13, -9, 43, 43, 43, 43, 43, 43,
+ (3,1,15): 43, -9, -9, -9,
+ (3,2,0): -9, 13, 13, 13, 13, 13, 13, 13, -9, 43, 43, 43, 43, 43, 43,
+ (3,2,15): 43, -9, -9, -9,
+ (3,3,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, 43, 43, 43, 43, 43, 43,
+ (3,3,15): 43, -9, -9, -9,
+ (3,4,0): 23, 23, 23, 23, 23, 23, 23, -9, -9, 43, 43, 43, 43, 43, 43,
+ (3,4,15): 43, -9, -9, -9,
+ (3,5,0): 23, 23, 23, 23, 23, 23, 23, -9, -9, 43, 43, 43, 43, 43, 43,
+ (3,5,15): 43, -9, -9, -9,
+ (3,6,0): 23, 23, 23, 23, 23, 23, 23, -9, -9, -9, -9, -9, -9, -9, -9,
+ (3,6,15): -9, -9, -9, -9,
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+ (3,7,15): -9, -9, -9, -9,
+ (3,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 53, 53, 53,
+ (3,8,15): 53, 53, 53, 53,
+ (3,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 53, 53, 53,
+ (3,9,15): 53, 53, 53, 53,
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+ (3,10,15): 53, 53, 53, 53,
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+ (3,11,15): -9, -9, -9, -9,
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+ (3,12,15): -9, -9, -9, -9,
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+ (4,0,15): -9, -9, -9, -9,
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+ (4,4,15): 44, -9, -9, -9,
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+ (5,4,15): 45, -9, -9, -9,
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+ (5,6,0): 25, 25, 25, 25, 25, 25, 25, -9, -9, -9, -9, -9, -9, -9, -9,
+ (5,6,15): -9, -9, -9, -9,
+ (5,7,0): 25, 25, 25, 25, 25, 25, 25, -9, -9, -9, -9, -9, -9, -9, -9,
+ (5,7,15): -9, -9, -9, -9,
+ (5,8,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 55, 55, 55,
+ (5,8,15): 55, 55, 55, 55,
+ (5,9,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 55, 55, 55,
+ (5,9,15): 55, 55, 55, 55,
+ (5,10,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, 55, 55, 55,
+ (5,10,15): 55, 55, 55, 55,
+ (5,11,0): -9, -9, -9, -9, 35, 35, 35, 35, 35, 35, 35, -9, -9, -9, -9,
+ (5,11,15): -9, -9, -9, -9,
+ (5,12,0): -9, -9, -9, -9, 35, 35, 35, 35, 35, 35, 35, -9, -9, -9, -9,
+ (5,12,15): -9, -9, -9, -9
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds_layout-4.ddl b/tools/testfiles/vds/tvds_layout-4.ddl
new file mode 100644
index 0000000..018644e
--- /dev/null
+++ b/tools/testfiles/vds/tvds_layout-4.ddl
@@ -0,0 +1,78 @@
+HDF5 "4_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 9, 4, 4 ) / ( H5S_UNLIMITED, 4, 4 ) }
+ STORAGE_LAYOUT {
+ MAPPING 0 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (3,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (3,4,4)
+ }
+ }
+ SOURCE {
+ FILE "4_%b.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (3,4,4)
+ }
+ }
+ }
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE -9
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_INCR
+ }
+ DATA {
+ (0,0,0): 10, 10, 10, 10,
+ (0,1,0): 10, 10, 10, 10,
+ (0,2,0): 10, 10, 10, 10,
+ (0,3,0): 10, 10, 10, 10,
+ (1,0,0): 11, 11, 11, 11,
+ (1,1,0): 11, 11, 11, 11,
+ (1,2,0): 11, 11, 11, 11,
+ (1,3,0): 11, 11, 11, 11,
+ (2,0,0): 12, 12, 12, 12,
+ (2,1,0): 12, 12, 12, 12,
+ (2,2,0): 12, 12, 12, 12,
+ (2,3,0): 12, 12, 12, 12,
+ (3,0,0): 20, 20, 20, 20,
+ (3,1,0): 20, 20, 20, 20,
+ (3,2,0): 20, 20, 20, 20,
+ (3,3,0): 20, 20, 20, 20,
+ (4,0,0): 21, 21, 21, 21,
+ (4,1,0): 21, 21, 21, 21,
+ (4,2,0): 21, 21, 21, 21,
+ (4,3,0): 21, 21, 21, 21,
+ (5,0,0): 22, 22, 22, 22,
+ (5,1,0): 22, 22, 22, 22,
+ (5,2,0): 22, 22, 22, 22,
+ (5,3,0): 22, 22, 22, 22,
+ (6,0,0): 30, 30, 30, 30,
+ (6,1,0): 30, 30, 30, 30,
+ (6,2,0): 30, 30, 30, 30,
+ (6,3,0): 30, 30, 30, 30,
+ (7,0,0): 31, 31, 31, 31,
+ (7,1,0): 31, 31, 31, 31,
+ (7,2,0): 31, 31, 31, 31,
+ (7,3,0): 31, 31, 31, 31,
+ (8,0,0): 32, 32, 32, 32,
+ (8,1,0): 32, 32, 32, 32,
+ (8,2,0): 32, 32, 32, 32,
+ (8,3,0): 32, 32, 32, 32
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/tvds_layout-5.ddl b/tools/testfiles/vds/tvds_layout-5.ddl
new file mode 100644
index 0000000..b43629a
--- /dev/null
+++ b/tools/testfiles/vds/tvds_layout-5.ddl
@@ -0,0 +1,118 @@
+HDF5 "5_vds.h5" {
+GROUP "/" {
+ DATASET "vds_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 9, 4, 4 ) / ( H5S_UNLIMITED, 4, 4 ) }
+ STORAGE_LAYOUT {
+ MAPPING 0 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (3,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,4,4)
+ }
+ }
+ SOURCE {
+ FILE "5_a.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,4)
+ }
+ }
+ }
+ MAPPING 1 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (1,0,0)
+ STRIDE (3,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,4,4)
+ }
+ }
+ SOURCE {
+ FILE "5_b.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,4)
+ }
+ }
+ }
+ MAPPING 2 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (2,0,0)
+ STRIDE (3,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,4,4)
+ }
+ }
+ SOURCE {
+ FILE "5_c.h5"
+ DATASET "/source_dset"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (1,1,1)
+ BLOCK (H5S_UNLIMITED,4,4)
+ }
+ }
+ }
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE -9
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_INCR
+ }
+ DATA {
+ (0,0,0): 10, 10, 10, 10,
+ (0,1,0): 10, 10, 10, 10,
+ (0,2,0): 10, 10, 10, 10,
+ (0,3,0): 10, 10, 10, 10,
+ (1,0,0): 20, 20, 20, 20,
+ (1,1,0): 20, 20, 20, 20,
+ (1,2,0): 20, 20, 20, 20,
+ (1,3,0): 20, 20, 20, 20,
+ (2,0,0): 30, 30, 30, 30,
+ (2,1,0): 30, 30, 30, 30,
+ (2,2,0): 30, 30, 30, 30,
+ (2,3,0): 30, 30, 30, 30,
+ (3,0,0): 11, 11, 11, 11,
+ (3,1,0): 11, 11, 11, 11,
+ (3,2,0): 11, 11, 11, 11,
+ (3,3,0): 11, 11, 11, 11,
+ (4,0,0): 21, 21, 21, 21,
+ (4,1,0): 21, 21, 21, 21,
+ (4,2,0): 21, 21, 21, 21,
+ (4,3,0): 21, 21, 21, 21,
+ (5,0,0): 31, 31, 31, 31,
+ (5,1,0): 31, 31, 31, 31,
+ (5,2,0): 31, 31, 31, 31,
+ (5,3,0): 31, 31, 31, 31,
+ (6,0,0): 12, 12, 12, 12,
+ (6,1,0): 12, 12, 12, 12,
+ (6,2,0): 12, 12, 12, 12,
+ (6,3,0): 12, 12, 12, 12,
+ (7,0,0): 22, 22, 22, 22,
+ (7,1,0): 22, 22, 22, 22,
+ (7,2,0): 22, 22, 22, 22,
+ (7,3,0): 22, 22, 22, 22,
+ (8,0,0): 32, 32, 32, 32,
+ (8,1,0): 32, 32, 32, 32,
+ (8,2,0): 32, 32, 32, 32,
+ (8,3,0): 32, 32, 32, 32
+ }
+ }
+}
+}