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-rw-r--r--MANIFEST17
-rw-r--r--tools/h5dump/h5dump.c78
-rw-r--r--tools/h5dump/h5dumpgentest.c411
-rw-r--r--tools/h5dump/testh5dump.sh.in66
-rw-r--r--tools/h5ls/h5ls.c14
-rw-r--r--tools/lib/Makefile.in2
-rw-r--r--tools/lib/h5tools.h3
-rw-r--r--tools/lib/h5tools_ref.c306
-rw-r--r--tools/lib/h5tools_ref.h49
-rw-r--r--tools/lib/h5tools_str.c21
-rw-r--r--tools/testfiles/tchunked.ddl8
-rw-r--r--tools/testfiles/tcompact.ddl18
-rw-r--r--tools/testfiles/tcontiguos.ddl8
-rw-r--r--tools/testfiles/tdeflate.ddl20
-rw-r--r--tools/testfiles/texternal.ddl18
-rw-r--r--tools/testfiles/tfillearly.ddl8
-rw-r--r--tools/testfiles/tfillifset.ddl8
-rw-r--r--tools/testfiles/tfillnever.ddl8
-rw-r--r--tools/testfiles/tfletcher32.ddl20
-rw-r--r--tools/testfiles/tnofilename.ddl1
-rw-r--r--tools/testfiles/treference.ddl12
-rw-r--r--tools/testfiles/tshuffle.ddl20
-rw-r--r--tools/testfiles/tstring.ddl18
-rw-r--r--tools/testfiles/tszip.ddl8
-rw-r--r--tools/testfiles/tuserfilter.ddl9
25 files changed, 1108 insertions, 43 deletions
diff --git a/MANIFEST b/MANIFEST
index 6efdd68..7a70f85 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1171,6 +1171,8 @@
./tools/lib/h5tools_str.h
./tools/lib/h5tools_utils.c
./tools/lib/h5tools_utils.h
+./tools/lib/h5tools_ref.c
+./tools/lib/h5tools_ref.h
./tools/lib/talign.c
./tools/lib/h5diff.c
./tools/lib/h5diff_array.c
@@ -1314,6 +1316,21 @@
./tools/testfiles/tboot.ddl
./tools/testfiles/tcontents.ddl
./tools/testfiles/tfilters.h5
+./tools/testfiles/tchunked.ddl
+./tools/testfiles/tcompact.ddl
+./tools/testfiles/tcontiguos.ddl
+./tools/testfiles/tdeflate.ddl
+./tools/testfiles/texternal.ddl
+./tools/testfiles/tfillearly.ddl
+./tools/testfiles/tfillifset.ddl
+./tools/testfiles/tfillnever.ddl
+./tools/testfiles/tfletcher32.ddl
+./tools/testfiles/treference.ddl
+./tools/testfiles/tshuffle.ddl
+./tools/testfiles/tstring.ddl
+./tools/testfiles/tszip.ddl
+./tools/testfiles/tuserfilter.ddl
+
# Expected output from h5ls tests
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index 550527b..b276e25 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -18,11 +18,12 @@
#include "H5private.h"
#include "h5tools.h"
#include "h5tools_utils.h"
+#include "h5tools_ref.h"
#include "h5trav.h"
/* module-scoped variables */
-static const char *progname = "h5dump";
+const char *progname = "h5dump";
/* 3 private values: can't be set, but can be read.
Note: these are defined in H5Zprivate, they are
@@ -32,11 +33,11 @@ static const char *progname = "h5dump";
#define H5_SZIP_MSB_OPTION_MASK 16
#define H5_SZIP_RAW_OPTION_MASK 128
-static int d_status = EXIT_SUCCESS;
+int d_status = EXIT_SUCCESS;
static int unamedtype = 0; /* shared data type with no name */
static size_t prefix_len = 1024;
static table_t *group_table = NULL, *dset_table = NULL, *type_table = NULL;
-static char *prefix;
+char *prefix;
static const char *driver = NULL; /* The driver to open the file with. */
static const dump_header *dump_header_format;
@@ -52,15 +53,14 @@ static int display_bb = FALSE; /*superblock */
static int display_dcpl = FALSE; /*dcpl */
static int display_fi = FALSE; /*file index */
static int display_ai = TRUE; /*array index */
+static int display_lf = FALSE; /*do CR/LF */
+
/**
** Added for XML **
**/
-/* fill_ref_path_table is called to inialize the object reference paths. */
-static herr_t fill_ref_path_table(hid_t, const char *, void *);
-
/* module-scoped variables for XML option */
#define DEFAULT_XSD "http://hdf.ncsa.uiuc.edu/DTDs/HDF5-File.xsd"
#define DEFAULT_DTD "http://hdf.ncsa.uiuc.edu/DTDs/HDF5-File.dtd"
@@ -69,13 +69,8 @@ static int doxml = 0;
static int useschema = 1;
static const char *xml_dtd_uri = NULL;
static const char *xmlnsprefix="hdf5:";
-static hid_t thefile = -1;
-typedef struct ref_path_table_entry {
- hid_t obj;
- char *apath;
- H5G_stat_t statbuf;
- struct ref_path_table_entry *next;
-} ref_path_table_entry_t;
+hid_t thefile = -1;
+
/** end XML **/
/* internal functions */
@@ -83,14 +78,12 @@ static hid_t h5_fileaccess(void);
static void dump_oid(hid_t oid);
static void print_enum(hid_t type);
static herr_t dump_all(hid_t group, const char *name, void *op_data);
-static char *lookup_ref_path(hobj_ref_t );
#ifdef LATER
static void check_compression(hid_t);
#endif /* LATER */
-static ref_path_table_entry_t *ref_path_table_lookup(const char *);
static int xml_name_to_XID(const char *, char *, int , int );
-static int get_next_xid(void);
-static haddr_t get_fake_xid (void);
+
+
/* external functions */
extern int print_data(hid_t, hid_t, int);
@@ -160,7 +153,8 @@ static h5dump_t dataformat = {
"%s", /*dset_blockformat_pre */
"%s", /*dset_ptformat_pre */
"%s", /*dset_ptformat */
- 1 /*array indices */
+ 1 , /*array indices */
+ 1 /*interpret CR/LF information */
};
@@ -244,7 +238,8 @@ static h5dump_t xml_dataformat = {
"%s", /*dset_blockformat_pre */
"%s", /*dset_ptformat_pre */
"%s", /*dset_ptformat */
- 0 /*array indices */
+ 0 , /*array indices */
+ 0 /*interpret CR/LF information */
};
/** XML **/
@@ -331,8 +326,6 @@ static void xml_print_datatype(hid_t, unsigned);
static void xml_print_enum(hid_t);
static int xml_print_refs(hid_t, int);
static int xml_print_strs(hid_t, int);
-static ref_path_table_entry_t *ref_path_table_put(hid_t, const char *);
-static ref_path_table_entry_t *ref_path_table_gen_fake(const char *);
static char *xml_escape_the_string(const char *, int);
static char *xml_escape_the_name(const char *);
@@ -352,7 +345,7 @@ struct handler_t {
/* binary: not implemented yet */
static const char *s_opts = "hbBHirVa:c:d:f:g:k:l:t:w:xD:uX:o:s:S:A";
#else
-static const char *s_opts = "hnpBHirVa:c:d:f:g:k:l:t:w:xD:uX:o:s:S:A";
+static const char *s_opts = "hnpeBHirVa:c:d:f:g:k:l:t:w:xD:uX:o:s:S:A";
#endif /* 0 */
static struct long_options l_opts[] = {
{ "help", no_arg, 'h' },
@@ -600,6 +593,7 @@ usage(const char *prog)
fprintf(stdout, " -A Print the header and value of attributes; data of datasets is not displayed\n");
fprintf(stdout, " -i, --object-ids Print the object ids\n");
fprintf(stdout, " -r, --string Print 1-byte integer datasets as ASCII\n");
+ fprintf(stdout, " -e, Interpret carriage return (\\n) as new line\n");
fprintf(stdout, " -V, --version Print version number and exit\n");
fprintf(stdout, " -a P, --attribute=P Print the specified attribute\n");
fprintf(stdout, " -d P, --dataset=P Print the specified dataset\n");
@@ -1966,6 +1960,9 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int pindex)
depth=0;
}
+ /*interpret CR/LF information */
+ outputformat->do_lf=display_lf;
+
status = h5tools_dump_dset(stdout, outputformat, obj_id, -1, sset, depth);
H5Tclose(f_type);
@@ -2086,18 +2083,24 @@ static void dump_fill_value(hid_t dcpl,hid_t type_id, hid_t obj_id)
h5tools_context_t ctx; /*print context */
size_t size;
void *buf=NULL;
- hsize_t nelmts=1;
+ int nelmts=1;
h5dump_t *outputformat = &dataformat;
+ herr_t ret;
+ hid_t n_type;
memset(&ctx, 0, sizeof(ctx));
ctx.indent_level=2;
size = H5Tget_size(type_id);
buf = malloc(size);
- H5Pget_fill_value(dcpl, type_id, buf);
+ n_type = H5Tget_native_type(type_id,H5T_DIR_DEFAULT);
+
+ ret=H5Pget_fill_value(dcpl, n_type, buf);
h5tools_dump_simple_data(stdout, outputformat, obj_id, &ctx,
- START_OF_DATA | END_OF_DATA, nelmts, type_id, buf);
+ START_OF_DATA | END_OF_DATA, nelmts, n_type, buf);
+
+ H5Tclose(n_type);
if (buf)
free (buf);
@@ -2160,11 +2163,11 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("SIZE %d ", (int)storage_size);
+ HDfprintf(stdout, "SIZE %Hu ", storage_size);
rank = H5Pget_chunk(dcpl_id,NELMTS(chsize),chsize);
- printf("%s %d", dump_header_format->dataspacedimbegin, (int)chsize[0]);
+ HDfprintf(stdout,"%s %Hu", dump_header_format->dataspacedimbegin, chsize[0]);
for ( i=1; i<rank; i++)
- printf(", %d", (int)chsize[i]);
+ HDfprintf(stdout, ", %Hu", chsize[i]);
printf(" %s\n", dump_header_format->dataspacedimend);
/*end indent */
indent -= COL;
@@ -2177,7 +2180,7 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("SIZE %d\n", (int)storage_size);
+ HDfprintf(stdout, "SIZE %Hu\n", storage_size);
/*end indent */
indent -= COL;
indentation(indent + COL);
@@ -2196,9 +2199,9 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
indent += COL;
for ( i=0; i<next; i++) {
- H5Pget_external(dcpl_id,(unsigned)i,sizeof(name),name,&offset,&size);
+ H5Pget_external(dcpl_id,i,sizeof(name),name,&offset,&size);
indentation(indent + COL);
- printf("FILENAME %s SIZE %d OFFSET %d\n",name,(int)size,(int)offset);
+ HDfprintf(stdout,"FILENAME %s SIZE %Hu OFFSET %ld\n",name,size,offset);
}
/*end indent */
indent -= COL;
@@ -2212,7 +2215,7 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("SIZE %d OFFSET %d\n", (int)storage_size, (int)ioffset);
+ HDfprintf(stdout,"SIZE %Hu OFFSET %Hu\n", storage_size, ioffset);
/*end indent */
indent -= COL;
indentation(indent + COL);
@@ -2340,8 +2343,6 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
H5Pget_fill_time(dcpl_id, &ft);
switch ( ft )
{
- default:
- break;
case H5D_FILL_TIME_ALLOC:
printf("%s", "ALLOC\n");
break;
@@ -3061,6 +3062,9 @@ parse_start:
case 'p':
display_dcpl = TRUE;
break;
+ case 'e':
+ display_lf = TRUE;
+ break;
case 'H':
display_data = FALSE;
display_attr_data = FALSE;
@@ -3702,6 +3706,8 @@ print_enum(hid_t type)
printf("\n%*s <empty>", indent + 4, "");
}
+#if 0
+
/*
* XML support
*/
@@ -3879,7 +3885,7 @@ ref_path_table_gen_fake(const char *path)
*
*-------------------------------------------------------------------------
*/
-static char *
+char *
lookup_ref_path(hobj_ref_t ref)
{
ref_path_table_entry_t *pte = ref_path_table;
@@ -3983,6 +3989,8 @@ fill_ref_path_table(hid_t group, const char *name, void UNUSED * op_data)
return 0;
}
+#endif
+
/*
* create a string suitable for and XML NCNAME. Uses the
* object reference to create the string.
diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c
index 9231b64..cd477da 100644
--- a/tools/h5dump/h5dumpgentest.c
+++ b/tools/h5dump/h5dumpgentest.c
@@ -4447,6 +4447,8 @@ make_external(hid_t fid)
assert(ret>=0);
}
+
+#if 0
/*-------------------------------------------------------------------------
* Function: gent_filters
*
@@ -4473,10 +4475,11 @@ static void gent_filters(void)
hsize_t dims2[1]={2};
hvl_t buf2[2];
hsize_t dims3[1]={1};
- char buf3[]={"string\n new"};
+ char buf3[]={"this is\n a string with three\n newline\n escape characters"};
hsize_t dims4[1]={6};
char buf4[6]={"abcdef"};
- hobj_ref_t buf5[2];
+ hobj_ref_t buf5[5];
+ hsize_t dims5[1]={5};
int i, j, n, ret, fillval, val;
typedef enum
@@ -4787,14 +4790,412 @@ static void gent_filters(void)
* reference
*-------------------------------------------------------------------------
*/
- ret=H5Rcreate(&buf5[0],fid,"char",H5R_OBJECT,-1);
+ ret=H5Rcreate(&buf5[0],fid,"compact",H5R_OBJECT,-1);
+ assert(ret>=0);
+ ret=H5Rcreate(&buf5[1],fid,"myvlen",H5R_OBJECT,-1);
+ assert(ret>=0);
+ ret=H5Rcreate(&buf5[2],fid,"compact",H5R_OBJECT,-1);
+ assert(ret>=0);
+ ret=H5Rcreate(&buf5[3],fid,"myvlen",H5R_OBJECT,-1);
+ assert(ret>=0);
+ ret=H5Rcreate(&buf5[4],fid,"contiguous",H5R_OBJECT,-1);
+ assert(ret>=0);
+ write_dset(fid,1,dims5,"reference",H5T_STD_REF_OBJ,buf5);
+
+
+
+/*-------------------------------------------------------------------------
+ * close
+ *-------------------------------------------------------------------------
+ */
+
+ ret=H5Sclose(sid1);
+ assert(ret>=0);
+
+ ret=H5Sclose(sid);
+ assert(ret>=0);
+
+ ret=H5Pclose(dcpl);
+ assert(ret>=0);
+
+ ret=H5Fclose(fid);
+ assert(ret>=0);
+}
+
+#endif
+
+
+/*-------------------------------------------------------------------------
+ * Function: gent_filters
+ *
+ * Purpose: make several datasets with filters, external dataset
+ * fill value
+ *
+ *-------------------------------------------------------------------------
+ */
+static void gent_filters()
+{
+ hid_t fid; /* file id */
+ hid_t dcpl; /* dataset creation property list */
+ hid_t sid; /* dataspace ID */
+ hid_t sid1; /* dataspace ID */
+ hid_t tid; /* datatype ID */
+ hid_t did; /* dataset ID */
+#if defined (H5_HAVE_FILTER_SZIP)
+ unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
+ unsigned szip_pixels_per_block=4;
+#endif
+ hsize_t dims1[RANK]={DIM1,DIM2};
+ hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
+ int buf1[DIM1][DIM2];
+ hsize_t dims2[1]={2};
+ hvl_t buf2[2];
+ hsize_t dims3[1]={1};
+ char buf3[]={"this is\n a string with three\n newline\n escape characters"};
+ hsize_t dims4[1]={6};
+ char buf4[6]={"abcdef"};
+ hobj_ref_t buf5[5];
+ hsize_t dims5[1]={5};
+ int i, j, n, ret, val;
+ int fillval = -99;
+
+
+ typedef enum
+ {
+ E_RED,
+ E_GREEN
+ } e_t;
+
+
+ for (i=n=0; i<DIM1; i++){
+ for (j=0; j<DIM2; j++){
+ buf1[i][j]=n++;
+ }
+ }
+
+ /* create a file */
+ fid = H5Fcreate(FILE44, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ assert(fid>=0);
+
+ /* create a space */
+ sid = H5Screate_simple(SPACE2_RANK, dims1, NULL);
+
+ /* create a dataset creation property list; the same DCPL is used for all dsets */
+ dcpl = H5Pcreate(H5P_DATASET_CREATE);
+
+ ret=H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval);
+ assert(ret>=0);
+
+
+/*-------------------------------------------------------------------------
+ * create a compact and contiguous storage layout dataset
+ * add a comment to the datasets
+ *-------------------------------------------------------------------------
+ */
+ ret=H5Pset_layout(dcpl, H5D_COMPACT);
+ assert(ret>=0);
+
+ ret=make_dset(fid,"compact",sid,dcpl,buf1);
+ assert(ret>=0);
+
+ ret=H5Gset_comment(fid,"compact", "This is a dataset with compact storage");
+ assert(ret>=0);
+
+ ret=H5Pset_layout(dcpl, H5D_CONTIGUOUS);
+ assert(ret>=0);
+
+ ret=make_dset(fid,"contiguous",sid,dcpl,buf1);
+ assert(ret>=0);
+
+ ret=H5Gset_comment(fid,"contiguous", "This is a dataset with contiguous storage");
+ assert(ret>=0);
+
+ ret=H5Pset_layout(dcpl, H5D_CHUNKED);
+ assert(ret>=0);
+
+ ret=H5Pset_chunk(dcpl, SPACE2_RANK, chunk_dims);
+ assert(ret>=0);
+
+ ret=make_dset(fid,"chunked",sid,dcpl,buf1);
+ assert(ret>=0);
+
+ ret=H5Gset_comment(fid,"chunked", "This is a dataset with chunked storage");
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * make several dataset with filters
+ *-------------------------------------------------------------------------
+ */
+
+ /* set up chunk */
+ ret=H5Pset_chunk(dcpl, SPACE2_RANK, chunk_dims);
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * SZIP
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_SZIP)
+ /* remove the filters from the dcpl */
+ ret=H5Premove_filter(dcpl,H5Z_FILTER_ALL);
+ assert(ret>=0);
+
+ /* set szip data */
+ ret=H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block);
+ assert(ret>=0);
+
+ ret=make_dset(fid,"szip",sid,dcpl,buf1);
+ assert(ret>=0);
+#endif
+
+/*-------------------------------------------------------------------------
+ * GZIP
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_DEFLATE)
+ /* remove the filters from the dcpl */
+ ret=H5Premove_filter(dcpl,H5Z_FILTER_ALL);
+ assert(ret>=0);
+
+ /* set deflate data */
+ ret=H5Pset_deflate(dcpl, 9);
assert(ret>=0);
- ret=H5Rcreate(&buf5[1],fid,"string",H5R_OBJECT,-1);
+
+ ret=make_dset(fid,"deflate",sid,dcpl,buf1);
assert(ret>=0);
- write_dset(fid,1,dims2,"reference",H5T_STD_REF_OBJ,buf5);
+#endif
+/*-------------------------------------------------------------------------
+ * shuffle
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_SHUFFLE)
+ /* remove the filters from the dcpl */
+ ret=H5Premove_filter(dcpl,H5Z_FILTER_ALL);
+ assert(ret>=0);
+
+ /* set the shuffle filter */
+ ret=H5Pset_shuffle(dcpl);
+ assert(ret>=0);
+
+ ret=make_dset(fid,"shuffle",sid,dcpl,buf1);
+ assert(ret>=0);
+#endif
+
+
+/*-------------------------------------------------------------------------
+ * checksum
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_FLETCHER32)
+ /* remove the filters from the dcpl */
+ ret=H5Premove_filter(dcpl,H5Z_FILTER_ALL);
+ assert(ret>=0);
+
+ /* set the checksum filter */
+ ret=H5Pset_fletcher32(dcpl);
+ assert(ret>=0);
+ ret=make_dset(fid,"fletcher32",sid,dcpl,buf1);
+ assert(ret>=0);
+#endif
+
+/*-------------------------------------------------------------------------
+ * all filters
+ *-------------------------------------------------------------------------
+ */
+ /* remove the filters from the dcpl */
+ ret=H5Premove_filter(dcpl,H5Z_FILTER_ALL);
+ assert(ret>=0);
+
+#if defined (H5_HAVE_FILTER_SHUFFLE)
+ /* set the shuffle filter */
+ ret=H5Pset_shuffle(dcpl);
+ assert(ret>=0);
+#endif
+
+#if defined (H5_HAVE_FILTER_SZIP)
+ szip_options_mask=H5_SZIP_CHIP_OPTION_MASK | H5_SZIP_EC_OPTION_MASK;
+ /* set szip data */
+ ret=H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block);
+ assert(ret>=0);
+#endif
+
+#if defined (H5_HAVE_FILTER_DEFLATE)
+ /* set deflate data */
+ ret=H5Pset_deflate(dcpl, 5);
+ assert(ret>=0);
+#endif
+
+#if defined (H5_HAVE_FILTER_FLETCHER32)
+ /* set the checksum filter */
+ ret=H5Pset_fletcher32(dcpl);
+ assert(ret>=0);
+#endif
+
+ ret=make_dset(fid,"all",sid,dcpl,buf1);
+ assert(ret>=0);
+
+
+/*-------------------------------------------------------------------------
+ * user defined filter
+ *-------------------------------------------------------------------------
+ */
+ /* remove the filters from the dcpl */
+ ret=H5Premove_filter(dcpl,H5Z_FILTER_ALL);
+ assert(ret>=0);
+
+#ifdef H5_WANT_H5_V1_4_COMPAT
+ ret=H5Zregister (MYFILTER_ID, "myfilter", myfilter);
+#else
+ ret=H5Zregister (H5Z_MYFILTER);
+#endif
+ assert(ret>=0);
+
+ H5Pset_filter (dcpl, MYFILTER_ID, 0, 0, NULL);
+ assert(ret>=0);
+
+ ret=make_dset(fid,"myfilter",sid,dcpl,buf1);
+ assert(ret>=0);
+
+ /* remove the filters from the dcpl */
+ ret=H5Premove_filter(dcpl,H5Z_FILTER_ALL);
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * make an external dataset
+ *-------------------------------------------------------------------------
+ */
+ make_external(fid);
+
+ /*-------------------------------------------------------------------------
+ * make datasets with fill value combinations
+ *-------------------------------------------------------------------------
+ */
+
+
+ ret=H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY);
+ assert(ret>=0);
+
+ ret=H5Pset_fill_time(dcpl, H5D_FILL_TIME_ALLOC);
+ assert(ret>=0);
+
+ ret=H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval);
+ assert(ret>=0);
+
+ ret=make_dset(fid,"fill_early",sid,dcpl,buf1);
+ assert(ret>=0);
+
+ ret=H5Pset_fill_time(dcpl, H5D_FILL_TIME_NEVER);
+ assert(ret>=0);
+
+ ret=make_dset(fid,"fill_never",sid,dcpl,buf1);
+ assert(ret>=0);
+
+ ret=H5Pset_fill_time(dcpl, H5D_FILL_TIME_IFSET);
+ assert(ret>=0);
+
+ ret=make_dset(fid,"fill_ifset",sid,dcpl,buf1);
+ assert(ret>=0);
+
+
+
+/*-------------------------------------------------------------------------
+ * commit a H5G_TYPE type with a comment
+ *-------------------------------------------------------------------------
+ */
+ tid=H5Tcopy(H5T_STD_B8LE);
+ ret=H5Tcommit(fid, "mytype", tid);
+ assert(ret>=0);
+
+ ret=H5Gset_comment(fid,"mytype", "This is a commited datatype");
+ assert(ret>=0);
+
+ ret=H5Tclose(tid);
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * enum type with nonprintable characters in the name
+ *-------------------------------------------------------------------------
+ */
+ tid = H5Tcreate(H5T_ENUM, sizeof(e_t));
+ H5Tenum_insert(tid, "RED 3 \\n", (val = 0, &val));
+ write_dset(fid,2,dims1,"enum",tid,0);
+ ret=H5Tclose(tid);
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * vlen
+ *-------------------------------------------------------------------------
+ */
+
+ buf2[0].len = 1;
+ buf2[0].p = malloc( 1 * sizeof(int));
+ ((int *)buf2[0].p)[0]=1;
+ buf2[1].len = 2;
+ buf2[1].p = malloc( 2 * sizeof(int));
+ ((int *)buf2[1].p)[0]=2;
+ ((int *)buf2[1].p)[1]=3;
+
+ sid1=H5Screate_simple(1,dims2,NULL);
+ tid=H5Tvlen_create(H5T_NATIVE_INT);
+ did=H5Dcreate(fid,"vlen",tid,sid1,H5P_DEFAULT);
+ ret=H5Dwrite(did,tid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf2);
+ assert(ret>=0);
+ ret=H5Tcommit(fid,"myvlen",tid);
+ assert(ret>=0);
+ ret=H5Dvlen_reclaim(tid,sid1,H5P_DEFAULT,buf2);
+ assert(ret>=0);
+ ret=H5Dclose(did);
+ assert(ret>=0);
+ ret=H5Tclose(tid);
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * bitfield
+ *-------------------------------------------------------------------------
+ */
+ tid = H5Tcopy(H5T_STD_B8LE);
+ write_dset(fid,1,dims3,"bitfield",tid,buf3);
+ ret=H5Tclose(tid);
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * string
+ *-------------------------------------------------------------------------
+ */
+
+ tid=H5Tcopy(H5T_C_S1);
+ ret=H5Tset_size(tid, sizeof(buf3));
+ assert(ret>=0);
+ write_dset(fid,1,dims3,"string",tid,buf3);
+ ret=H5Tclose(tid);
+ assert(ret>=0);
+
+/*-------------------------------------------------------------------------
+ * char array
+ *-------------------------------------------------------------------------
+ */
+ write_dset(fid,1,dims4,"char",H5T_NATIVE_CHAR,buf4);
+
+/*-------------------------------------------------------------------------
+ * reference
+ *-------------------------------------------------------------------------
+ */
+ ret=H5Rcreate(&buf5[0],fid,"compact",H5R_OBJECT,-1);
+ assert(ret>=0);
+ ret=H5Rcreate(&buf5[1],fid,"myvlen",H5R_OBJECT,-1);
+ assert(ret>=0);
+ ret=H5Rcreate(&buf5[2],fid,"compact",H5R_OBJECT,-1);
+ assert(ret>=0);
+ ret=H5Rcreate(&buf5[3],fid,"myvlen",H5R_OBJECT,-1);
+ assert(ret>=0);
+ ret=H5Rcreate(&buf5[4],fid,"contiguous",H5R_OBJECT,-1);
+ assert(ret>=0);
+ write_dset(fid,1,dims5,"reference",H5T_STD_REF_OBJ,buf5);
+
+
/*-------------------------------------------------------------------------
* close
*-------------------------------------------------------------------------
diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in
index ee45788..067d0f0 100644
--- a/tools/h5dump/testh5dump.sh.in
+++ b/tools/h5dump/testh5dump.sh.in
@@ -89,6 +89,15 @@ TOOLTEST() {
fi
}
+
+# Print a "SKIP" message
+SKIP() {
+ TESTING $DUMPER $@
+ echo " -SKIP-"
+}
+
+
+
##############################################################################
##############################################################################
### T H E T E S T S ###
@@ -209,6 +218,63 @@ TOOLTEST tboot.ddl -H -B -d compact tfilters.h5
TOOLTEST tcontents.ddl -n tfilters.h5
+# tests for storage layout
+# compact
+TOOLTEST tcompact.ddl -H -p -d compact tfilters.h5
+# contiguous
+TOOLTEST tcontiguos.ddl -H -p -d contiguos tfilters.h5
+# chunked
+TOOLTEST tchunked.ddl -H -p -d chunked tfilters.h5
+# external
+TOOLTEST texternal.ddl -H -p -d external tfilters.h5
+
+# Fill values
+TOOLTEST tfillearly.ddl -H -p -d fill_early tfilters.h5
+TOOLTEST tfillnever.ddl -H -p -d fill_never tfilters.h5
+TOOLTEST tfillifset.ddl -H -p -d fill_ifset tfilters.h5
+
+# references , print path
+TOOLTEST treference.ddl -d reference tfilters.h5
+
+# string , print new lines
+TOOLTEST tstring.ddl -e -d string tfilters.h5
+
+
+# tests for filters
+# SZIP
+option="-H -p -d szip tfilters.h5"
+if test $USE_FILTER_SZIP != "yes"; then
+ SKIP $option
+else
+TOOLTEST tszip.ddl $option
+fi
+# deflate
+option="-H -p -d deflate tfilters.h5"
+if test $USE_FILTER_DEFLATE != "yes"; then
+ SKIP $option
+else
+ TOOLTEST tdeflate.ddl $option
+fi
+# shuffle
+option="-H -p -d shuffle tfilters.h5"
+if test $USE_FILTER_SHUFFLE != "yes"; then
+ SKIP $option
+else
+ TOOLTEST tshuffle.ddl $option
+fi
+# fletcher32
+option="-H -p -d fletcher32 tfilters.h5"
+if test $USE_FILTER_FLETCHER32 != "yes"; then
+ SKIP $option
+else
+ TOOLTEST tfletcher32.ddl $option
+fi
+# user defined
+TOOLTEST tuserfilter.ddl -H -d myfilter tfilters.h5
+
+
+
+
if test $nerrors -eq 0 ; then
echo "All $DUMPER tests passed."
fi
diff --git a/tools/h5ls/h5ls.c b/tools/h5ls/h5ls.c
index da0bca1..373d4d0 100644
--- a/tools/h5ls/h5ls.c
+++ b/tools/h5ls/h5ls.c
@@ -78,6 +78,12 @@ static herr_t list (hid_t group, const char *name, void *cd);
static void display_type(hid_t type, int ind);
static char *fix_name(const char *path, const char *base);
+
+hid_t thefile;
+char *prefix;
+char *progname;
+int d_status;
+
/*-------------------------------------------------------------------------
* Function: usage
@@ -2258,3 +2264,11 @@ main (int argc, const char *argv[])
}
leave(0);
}
+
+/* dummy function */
+char *
+lookup_ref_path(hobj_ref_t ref)
+{
+ return NULL;
+}
+
diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in
index 070bdcc..2fff656 100644
--- a/tools/lib/Makefile.in
+++ b/tools/lib/Makefile.in
@@ -41,7 +41,7 @@ PROGS=$(PUB_PROGS) $(TEST_PROGS)
## Source and object files for the library; do not install
##
-LIB_SRC=h5tools.c h5tools_str.c h5tools_utils.c h5diff.c h5diff_array.c h5diff_attr.c h5diff_dset.c h5diff_util.c h5trav.c h5trav_table.c h5tools_filters.c
+LIB_SRC=h5tools.c h5tools_str.c h5tools_utils.c h5diff.c h5diff_array.c h5diff_attr.c h5diff_dset.c h5diff_util.c h5trav.c h5trav_table.c h5tools_filters.c h5tools_ref.c
LIB_OBJ=$(LIB_SRC:.c=.lo)
PUB_LIB=
AUX_LIB=$(LIB)
diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h
index 545db02..d561a94 100644
--- a/tools/lib/h5tools.h
+++ b/tools/lib/h5tools.h
@@ -318,6 +318,9 @@ typedef struct h5dump_t {
/*print array indices in output matrix */
int pindex;
+ /*interpret CR/LF information */
+ int do_lf;
+
} h5dump_t;
typedef struct dump_header{
diff --git a/tools/lib/h5tools_ref.c b/tools/lib/h5tools_ref.c
new file mode 100644
index 0000000..7dcccad
--- /dev/null
+++ b/tools/lib/h5tools_ref.c
@@ -0,0 +1,306 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include <stdio.h>
+#include <stdlib.h>
+#include "h5tools_ref.h"
+#include "H5private.h"
+#include "h5tools.h"
+#include "h5tools_utils.h"
+
+
+/*
+ * Table to look up a path name for an object
+ * reference.
+ *
+ * This table stores mappings of reference -> path
+ * for all objects in the file that may be the target of
+ * an object reference.
+ *
+ * The 'path' is an absolute path by which the object
+ * can be accessed. When an object has > 1 such path,
+ * only one will be used in the table, with no particular
+ * method of selecting which one.
+ */
+
+
+extern hid_t thefile;
+extern char *prefix;
+extern char *progname;
+extern int d_status;
+
+
+
+ref_path_table_entry_t *ref_path_table = NULL; /* the table */
+
+/*-------------------------------------------------------------------------
+ * Function: ref_path_table_lookup
+ *
+ * Purpose: Looks up a table entry given a path name.
+ * Used during construction of the table.
+ *
+ * Return: The table entre (pte) or NULL if not in the
+ * table.
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+ref_path_table_entry_t *
+ref_path_table_lookup(const char *thepath)
+{
+ H5G_stat_t sb;
+ ref_path_table_entry_t *pte = ref_path_table;
+
+ if(H5Gget_objinfo(thefile, thepath, TRUE, &sb)<0) {
+ /* fatal error ? */
+ return NULL;
+ }
+
+ while(pte!=NULL) {
+ if (sb.objno==pte->statbuf.objno)
+ return pte;
+ pte = pte->next;
+ }
+
+ return NULL;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: ref_path_table_put
+ *
+ * Purpose: Enter the 'obj' with 'path' in the table if
+ * not already there.
+ * Create an object reference, pte, and store them
+ * in the table.
+ *
+ * Return: The object reference for the object.
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+ref_path_table_entry_t *
+ref_path_table_put(hid_t obj, const char *path)
+{
+ ref_path_table_entry_t *pte;
+
+ /* look up 'obj'. If already in table, return */
+ pte = ref_path_table_lookup(path);
+ if (pte != NULL)
+ return pte;
+
+ /* if not found, then make new entry */
+
+ pte = (ref_path_table_entry_t *) malloc(sizeof(ref_path_table_entry_t));
+ if (pte == NULL) {
+ /* fatal error? */
+ return NULL;
+ }
+
+ pte->obj = obj;
+
+ pte->apath = HDstrdup(path);
+
+ if(H5Gget_objinfo(thefile, path, TRUE, &pte->statbuf)<0) {
+ /* fatal error? */
+ free(pte);
+ return NULL;
+ }
+
+ pte->next = ref_path_table;
+ ref_path_table = pte;
+
+ return pte;
+}
+
+/*
+ * counter used to disambiguate multiple instances of same object.
+ */
+int xid = 1;
+
+int get_next_xid() {
+ return xid++;
+}
+
+/*
+ * This counter is used to create fake object ID's
+ * The idea is to set it to the largest possible offest, which
+ * minimizes the chance of collision with a real object id.
+ *
+ */
+haddr_t fake_xid = HADDR_MAX;
+haddr_t
+get_fake_xid () {
+ return (fake_xid--);
+}
+
+/*
+ * for an object that does not have an object id (e.g., soft link),
+ * create a table entry with a fake object id as the key.
+ */
+
+ref_path_table_entry_t *
+ref_path_table_gen_fake(const char *path)
+{
+ ref_path_table_entry_t *pte;
+
+ /* look up 'obj'. If already in table, return */
+ pte = ref_path_table_lookup(path);
+ if (pte != NULL) {
+ return pte;
+ }
+
+ /* if not found, then make new entry */
+
+ pte = (ref_path_table_entry_t *) malloc(sizeof(ref_path_table_entry_t));
+ if (pte == NULL) {
+ /* fatal error? */
+ return NULL;
+ }
+
+ pte->obj = (hid_t)-1;
+
+ memset(&pte->statbuf,0,sizeof(H5G_stat_t));
+ pte->statbuf.objno = get_fake_xid();
+
+ pte->apath = HDstrdup(path);
+
+ pte->next = ref_path_table;
+ ref_path_table = pte;
+
+ return pte;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: lookup_ref_path
+ *
+ * Purpose: Lookup the path to the object with refernce 'ref'.
+ *
+ * Return: Return a path to the object, or NULL if not found.
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+char *
+lookup_ref_path(hobj_ref_t ref)
+{
+ ref_path_table_entry_t *pte = ref_path_table;
+
+ while(pte!=NULL) {
+ if (ref==pte->statbuf.objno)
+ return pte->apath;
+ pte = pte->next;
+ }
+ return NULL;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: fill_ref_path_table
+ *
+ * Purpose: Called by interator to create references for
+ * all objects and enter them in the table.
+ *
+ * Return: Error status.
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+fill_ref_path_table(hid_t group, const char *name, void UNUSED * op_data)
+{
+ hid_t obj;
+ char *tmp;
+ H5G_stat_t statbuf;
+ ref_path_table_entry_t *pte;
+ char *thepath;
+
+ H5Gget_objinfo(group, name, FALSE, &statbuf);
+ tmp = (char *) malloc(strlen(prefix) + strlen(name) + 2);
+
+ if (tmp == NULL)
+ return FAIL;
+
+ thepath = (char *) malloc(strlen(prefix) + strlen(name) + 2);
+
+ if (thepath == NULL) {
+ free(tmp);
+ return FAIL;
+ }
+
+ strcpy(tmp, prefix);
+
+ strcpy(thepath, prefix);
+ strcat(thepath, "/");
+ strcat(thepath, name);
+
+ switch (statbuf.type) {
+ case H5G_DATASET:
+ if ((obj = H5Dopen(group, name)) >= 0) {
+ pte = ref_path_table_lookup(thepath);
+ if (pte == NULL) {
+ ref_path_table_put(obj, thepath);
+ }
+ H5Dclose(obj);
+ } else {
+ error_msg(progname, "unable to get dataset \"%s\"\n", name);
+ d_status = EXIT_FAILURE;
+ }
+ break;
+ case H5G_GROUP:
+ if ((obj = H5Gopen(group, name)) >= 0) {
+ strcat(strcat(prefix, "/"), name);
+ pte = ref_path_table_lookup(thepath);
+ if (pte == NULL) {
+ ref_path_table_put(obj, thepath);
+ H5Giterate(obj, ".", NULL, fill_ref_path_table, NULL);
+ strcpy(prefix, tmp);
+ }
+ H5Gclose(obj);
+ } else {
+ error_msg(progname, "unable to dump group \"%s\"\n", name);
+ d_status = EXIT_FAILURE;
+ }
+ break;
+ case H5G_TYPE:
+ if ((obj = H5Topen(group, name)) >= 0) {
+ pte = ref_path_table_lookup(thepath);
+ if (pte == NULL) {
+ ref_path_table_put(obj, thepath);
+ }
+ H5Tclose(obj);
+ } else {
+ error_msg(progname, "unable to get dataset \"%s\"\n", name);
+ d_status = EXIT_FAILURE;
+ }
+ break;
+ default:
+ break;
+ }
+
+ free(tmp);
+ free(thepath);
+ return 0;
+}
+
diff --git a/tools/lib/h5tools_ref.h b/tools/lib/h5tools_ref.h
new file mode 100644
index 0000000..2f5fa83
--- /dev/null
+++ b/tools/lib/h5tools_ref.h
@@ -0,0 +1,49 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef H5TOOLS_REF_H__
+#define H5TOOLS_REF_H__
+
+#include "hdf5.h"
+
+typedef struct ref_path_table_entry_t {
+ hid_t obj;
+ hobj_ref_t *obj_ref;
+ char *apath;
+ H5G_stat_t statbuf;
+ struct ref_path_table_entry_t *next;
+}ref_path_table_entry_t;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+
+char* lookup_ref_path(hobj_ref_t ref);
+herr_t fill_ref_path_table(hid_t, const char *, void *);
+int get_next_xid(void);
+haddr_t get_fake_xid (void);
+struct ref_path_table_entry_t *ref_path_table_lookup(const char *);
+ref_path_table_entry_t *ref_path_table_put(hid_t obj, const char *path);
+struct ref_path_table_entry_t *ref_path_table_gen_fake(const char *);
+
+#ifdef __cplusplus
+}
+#endif
+
+
+
+#endif
+
+
diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c
index 5398d76..fb1d0c2 100644
--- a/tools/lib/h5tools_str.c
+++ b/tools/lib/h5tools_str.c
@@ -27,6 +27,9 @@
#include "h5tools.h" /*for h5dump_t structure */
#include "h5tools_str.h" /*function prototypes */
+extern char* lookup_ref_path(hobj_ref_t ref);
+
+
/*
* If REPEAT_VERBOSE is defined then character strings will be printed so
* that repeated character sequences like "AAAAAAAAAA" are displayed as
@@ -452,8 +455,13 @@ h5tools_print_char(h5tools_str_t *str, const h5dump_t *info, unsigned char ch)
h5tools_str_append(str, "\\f");
break;
case '\n':
- h5tools_str_append(str, "\\n");
- break;
+ if (info->do_lf) {
+ h5tools_str_append(str, "\n");
+ h5tools_str_append(str, " ");
+ }
+ else
+ h5tools_str_append(str, "\\n");
+ break;
case '\r':
h5tools_str_append(str, "\\r");
break;
@@ -794,6 +802,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5dump_t *info, hid_t container,
if (h5tools_is_zero(vp, H5Tget_size(type))) {
h5tools_str_append(str, "NULL");
} else {
+ char *path=NULL;
otype = H5Rget_obj_type(container, H5R_OBJECT, vp);
obj = H5Rdereference(container, H5R_OBJECT, vp);
H5Gget_objinfo(obj, ".", FALSE, &sb);
@@ -822,6 +831,14 @@ h5tools_str_sprint(h5tools_str_t *str, const h5dump_t *info, hid_t container,
h5tools_str_append(str, info->obj_format, sb.objno);
else
h5tools_str_append(str, info->obj_format, sb.fileno,sb.objno);
+
+ /* Print name */
+ path = lookup_ref_path(*(hobj_ref_t *)vp);
+ if (path) {
+ h5tools_str_append(str, " ");
+ h5tools_str_append(str, path);
+ h5tools_str_append(str, " ");
+ }
}
} else if (H5Tget_class(type) == H5T_ARRAY) {
int k, ndims;
diff --git a/tools/testfiles/tchunked.ddl b/tools/testfiles/tchunked.ddl
new file mode 100644
index 0000000..27cdbf8
--- /dev/null
+++ b/tools/testfiles/tchunked.ddl
@@ -0,0 +1,8 @@
+#############################
+Expected output for 'h5dump -H -p -d chunked tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "chunked" {
+ }
+}
+h5dump error: unable to open dataset "chunked"
diff --git a/tools/testfiles/tcompact.ddl b/tools/testfiles/tcompact.ddl
new file mode 100644
index 0000000..8c47e36
--- /dev/null
+++ b/tools/testfiles/tcompact.ddl
@@ -0,0 +1,18 @@
+#############################
+Expected output for 'h5dump -H -p -d compact tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "compact" {
+COMMENT "This is a dataset with compact storage"
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) }
+ STORAGE_LAYOUT COMPACT {
+ SIZE 800
+ }
+ FILLVALUE {
+ FILL_TIME IFSET
+ ALLOC_TIME EARLY
+ VALUE 0
+ }
+}
+}
diff --git a/tools/testfiles/tcontiguos.ddl b/tools/testfiles/tcontiguos.ddl
new file mode 100644
index 0000000..7c26099
--- /dev/null
+++ b/tools/testfiles/tcontiguos.ddl
@@ -0,0 +1,8 @@
+#############################
+Expected output for 'h5dump -H -p -d contiguos tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "contiguos" {
+ }
+}
+h5dump error: unable to open dataset "contiguos"
diff --git a/tools/testfiles/tdeflate.ddl b/tools/testfiles/tdeflate.ddl
new file mode 100644
index 0000000..2423c47
--- /dev/null
+++ b/tools/testfiles/tdeflate.ddl
@@ -0,0 +1,20 @@
+#############################
+Expected output for 'h5dump -H -p -d deflate tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "deflate" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) }
+ STORAGE_LAYOUT CHUNKED {
+ SIZE 385 ( 10, 5 )
+ }
+ FILTERS {
+ COMPRESSION DEFLATE { LEVEL 9 }
+ }
+ FILLVALUE {
+ FILL_TIME IFSET
+ ALLOC_TIME INCR
+ VALUE 0
+ }
+}
+}
diff --git a/tools/testfiles/texternal.ddl b/tools/testfiles/texternal.ddl
new file mode 100644
index 0000000..511bd4f
--- /dev/null
+++ b/tools/testfiles/texternal.ddl
@@ -0,0 +1,18 @@
+#############################
+Expected output for 'h5dump -H -p -d external tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "external" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 100 ) / ( 100 ) }
+ STORAGE_LAYOUT CONTIGUOUS EXTERNAL {
+ FILENAME ext1.bin SIZE 200 OFFSET 0
+ FILENAME ext2.bin SIZE 200 OFFSET 0
+ }
+ FILLVALUE {
+ FILL_TIME IFSET
+ ALLOC_TIME LATE
+ VALUE 0
+ }
+}
+}
diff --git a/tools/testfiles/tfillearly.ddl b/tools/testfiles/tfillearly.ddl
new file mode 100644
index 0000000..95f89ae
--- /dev/null
+++ b/tools/testfiles/tfillearly.ddl
@@ -0,0 +1,8 @@
+#############################
+Expected output for 'h5dump -H -p -d fill_early tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "fill_early" {
+ }
+}
+h5dump error: unable to open dataset "fill_early"
diff --git a/tools/testfiles/tfillifset.ddl b/tools/testfiles/tfillifset.ddl
new file mode 100644
index 0000000..79e748c
--- /dev/null
+++ b/tools/testfiles/tfillifset.ddl
@@ -0,0 +1,8 @@
+#############################
+Expected output for 'h5dump -H -p -d fill_ifset tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "fill_ifset" {
+ }
+}
+h5dump error: unable to open dataset "fill_ifset"
diff --git a/tools/testfiles/tfillnever.ddl b/tools/testfiles/tfillnever.ddl
new file mode 100644
index 0000000..38be076
--- /dev/null
+++ b/tools/testfiles/tfillnever.ddl
@@ -0,0 +1,8 @@
+#############################
+Expected output for 'h5dump -H -p -d fill_never tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "fill_never" {
+ }
+}
+h5dump error: unable to open dataset "fill_never"
diff --git a/tools/testfiles/tfletcher32.ddl b/tools/testfiles/tfletcher32.ddl
new file mode 100644
index 0000000..1b128cb
--- /dev/null
+++ b/tools/testfiles/tfletcher32.ddl
@@ -0,0 +1,20 @@
+#############################
+Expected output for 'h5dump -H -p -d fletcher32 tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "fletcher32" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) }
+ STORAGE_LAYOUT CHUNKED {
+ SIZE 816 ( 10, 5 )
+ }
+ FILTERS {
+ CHECKSUM FLETCHER32
+ }
+ FILLVALUE {
+ FILL_TIME IFSET
+ ALLOC_TIME INCR
+ VALUE 0
+ }
+}
+}
diff --git a/tools/testfiles/tnofilename.ddl b/tools/testfiles/tnofilename.ddl
index 5e9dcaa..56dd4b9 100644
--- a/tools/testfiles/tnofilename.ddl
+++ b/tools/testfiles/tnofilename.ddl
@@ -10,6 +10,7 @@ usage: h5dump [OPTIONS] file
-A Print the header and value of attributes; data of datasets is not displayed
-i, --object-ids Print the object ids
-r, --string Print 1-byte integer datasets as ASCII
+ -e, Interpret carriage return (\n) as new line
-V, --version Print version number and exit
-a P, --attribute=P Print the specified attribute
-d P, --dataset=P Print the specified dataset
diff --git a/tools/testfiles/treference.ddl b/tools/testfiles/treference.ddl
new file mode 100644
index 0000000..817bbaf
--- /dev/null
+++ b/tools/testfiles/treference.ddl
@@ -0,0 +1,12 @@
+#############################
+Expected output for 'h5dump -d reference tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "reference" {
+ DATATYPE H5T_REFERENCE
+ DATASPACE SIMPLE { ( 2 ) / ( 2 ) }
+ DATA {
+ (0) DATASET 36216 /char , DATASET 35944 /string
+ }
+}
+}
diff --git a/tools/testfiles/tshuffle.ddl b/tools/testfiles/tshuffle.ddl
new file mode 100644
index 0000000..aa80f6f
--- /dev/null
+++ b/tools/testfiles/tshuffle.ddl
@@ -0,0 +1,20 @@
+#############################
+Expected output for 'h5dump -H -p -d shuffle tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "shuffle" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) }
+ STORAGE_LAYOUT CHUNKED {
+ SIZE 800 ( 10, 5 )
+ }
+ FILTERS {
+ PREPROCESSING SHUFFLE
+ }
+ FILLVALUE {
+ FILL_TIME IFSET
+ ALLOC_TIME INCR
+ VALUE 0
+ }
+}
+}
diff --git a/tools/testfiles/tstring.ddl b/tools/testfiles/tstring.ddl
new file mode 100644
index 0000000..9d15f17
--- /dev/null
+++ b/tools/testfiles/tstring.ddl
@@ -0,0 +1,18 @@
+#############################
+Expected output for 'h5dump -e -d string tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "string" {
+ DATATYPE H5T_STRING {
+ STRSIZE 12;
+ STRPAD H5T_STR_NULLTERM;
+ CSET H5T_CSET_ASCII;
+ CTYPE H5T_C_S1;
+ }
+ DATASPACE SIMPLE { ( 1 ) / ( 1 ) }
+ DATA {
+ (0) "string
+ new"
+ }
+}
+}
diff --git a/tools/testfiles/tszip.ddl b/tools/testfiles/tszip.ddl
new file mode 100644
index 0000000..02a5fd3
--- /dev/null
+++ b/tools/testfiles/tszip.ddl
@@ -0,0 +1,8 @@
+#############################
+Expected output for 'h5dump -H -p -d szip tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "szip" {
+ }
+}
+h5dump error: unable to open dataset "szip"
diff --git a/tools/testfiles/tuserfilter.ddl b/tools/testfiles/tuserfilter.ddl
new file mode 100644
index 0000000..c262fb6
--- /dev/null
+++ b/tools/testfiles/tuserfilter.ddl
@@ -0,0 +1,9 @@
+#############################
+Expected output for 'h5dump -H -d myfilter tfilters.h5'
+#############################
+HDF5 "tfilters.h5" {
+DATASET "myfilter" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) }
+}
+}