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-rw-r--r--hl/src/H5LTanalyze.c147
-rw-r--r--hl/src/H5LTanalyze.l5
-rw-r--r--hl/test/dtype_file.txt1
-rw-r--r--hl/test/test_lite.c88
4 files changed, 170 insertions, 71 deletions
diff --git a/hl/src/H5LTanalyze.c b/hl/src/H5LTanalyze.c
index c8aa65c..2b31f11 100644
--- a/hl/src/H5LTanalyze.c
+++ b/hl/src/H5LTanalyze.c
@@ -784,7 +784,12 @@ int my_yyinput(char *, int);
#undef YY_INPUT
#define YY_INPUT(b, r, ms) (r=my_yyinput(b, ms))
#define token(x) (int)x
+
+#ifdef YY_BUF_SIZE
+#undef YY_BUF_SIZE
+#endif
#define YY_BUF_SIZE 262144 /*Define read buffer to be 256K*/
+
extern char *myinput;
extern int input_len;
@@ -827,7 +832,7 @@ char *myinput;*/
#define TAG_STRING 1
-#line 810 "H5LTanalyze.c"
+#line 815 "H5LTanalyze.c"
/* Macros after this point can all be overridden by user definitions in
* section 1.
@@ -978,10 +983,10 @@ YY_DECL
register char *yy_cp = NULL, *yy_bp = NULL;
register int yy_act;
-#line 70 "H5LTanalyze.l"
+#line 75 "H5LTanalyze.l"
-#line 964 "H5LTanalyze.c"
+#line 969 "H5LTanalyze.c"
if ( yy_init )
{
@@ -1067,277 +1072,277 @@ do_action: /* This label is used only to access EOF actions. */
{ /* beginning of action switch */
case 1:
YY_RULE_SETUP
-#line 72 "H5LTanalyze.l"
+#line 77 "H5LTanalyze.l"
{return token(H5T_STD_I8BE_TOKEN);}
YY_BREAK
case 2:
YY_RULE_SETUP
-#line 73 "H5LTanalyze.l"
+#line 78 "H5LTanalyze.l"
{return token(H5T_STD_I8LE_TOKEN);}
YY_BREAK
case 3:
YY_RULE_SETUP
-#line 74 "H5LTanalyze.l"
+#line 79 "H5LTanalyze.l"
{return token(H5T_STD_I16BE_TOKEN);}
YY_BREAK
case 4:
YY_RULE_SETUP
-#line 75 "H5LTanalyze.l"
+#line 80 "H5LTanalyze.l"
{return token(H5T_STD_I16LE_TOKEN);}
YY_BREAK
case 5:
YY_RULE_SETUP
-#line 76 "H5LTanalyze.l"
+#line 81 "H5LTanalyze.l"
{return token(H5T_STD_I32BE_TOKEN);}
YY_BREAK
case 6:
YY_RULE_SETUP
-#line 77 "H5LTanalyze.l"
+#line 82 "H5LTanalyze.l"
{return token(H5T_STD_I32LE_TOKEN);}
YY_BREAK
case 7:
YY_RULE_SETUP
-#line 78 "H5LTanalyze.l"
+#line 83 "H5LTanalyze.l"
{return token(H5T_STD_I64BE_TOKEN);}
YY_BREAK
case 8:
YY_RULE_SETUP
-#line 79 "H5LTanalyze.l"
+#line 84 "H5LTanalyze.l"
{return token(H5T_STD_I64LE_TOKEN);}
YY_BREAK
case 9:
YY_RULE_SETUP
-#line 81 "H5LTanalyze.l"
+#line 86 "H5LTanalyze.l"
{return token(H5T_STD_U8BE_TOKEN);}
YY_BREAK
case 10:
YY_RULE_SETUP
-#line 82 "H5LTanalyze.l"
+#line 87 "H5LTanalyze.l"
{return token(H5T_STD_U8LE_TOKEN);}
YY_BREAK
case 11:
YY_RULE_SETUP
-#line 83 "H5LTanalyze.l"
+#line 88 "H5LTanalyze.l"
{return token(H5T_STD_U16BE_TOKEN);}
YY_BREAK
case 12:
YY_RULE_SETUP
-#line 84 "H5LTanalyze.l"
+#line 89 "H5LTanalyze.l"
{return token(H5T_STD_U16LE_TOKEN);}
YY_BREAK
case 13:
YY_RULE_SETUP
-#line 85 "H5LTanalyze.l"
+#line 90 "H5LTanalyze.l"
{return token(H5T_STD_U32BE_TOKEN);}
YY_BREAK
case 14:
YY_RULE_SETUP
-#line 86 "H5LTanalyze.l"
+#line 91 "H5LTanalyze.l"
{return token(H5T_STD_U32LE_TOKEN);}
YY_BREAK
case 15:
YY_RULE_SETUP
-#line 87 "H5LTanalyze.l"
+#line 92 "H5LTanalyze.l"
{return token(H5T_STD_U64BE_TOKEN);}
YY_BREAK
case 16:
YY_RULE_SETUP
-#line 88 "H5LTanalyze.l"
+#line 93 "H5LTanalyze.l"
{return token(H5T_STD_U64LE_TOKEN);}
YY_BREAK
case 17:
YY_RULE_SETUP
-#line 90 "H5LTanalyze.l"
+#line 95 "H5LTanalyze.l"
{return token(H5T_NATIVE_CHAR_TOKEN);}
YY_BREAK
case 18:
YY_RULE_SETUP
-#line 91 "H5LTanalyze.l"
+#line 96 "H5LTanalyze.l"
{return token(H5T_NATIVE_SCHAR_TOKEN);}
YY_BREAK
case 19:
YY_RULE_SETUP
-#line 92 "H5LTanalyze.l"
+#line 97 "H5LTanalyze.l"
{return token(H5T_NATIVE_UCHAR_TOKEN);}
YY_BREAK
case 20:
YY_RULE_SETUP
-#line 93 "H5LTanalyze.l"
+#line 98 "H5LTanalyze.l"
{return token(H5T_NATIVE_SHORT_TOKEN);}
YY_BREAK
case 21:
YY_RULE_SETUP
-#line 94 "H5LTanalyze.l"
+#line 99 "H5LTanalyze.l"
{return token(H5T_NATIVE_USHORT_TOKEN);}
YY_BREAK
case 22:
YY_RULE_SETUP
-#line 95 "H5LTanalyze.l"
+#line 100 "H5LTanalyze.l"
{return token(H5T_NATIVE_INT_TOKEN);}
YY_BREAK
case 23:
YY_RULE_SETUP
-#line 96 "H5LTanalyze.l"
+#line 101 "H5LTanalyze.l"
{return token(H5T_NATIVE_UINT_TOKEN);}
YY_BREAK
case 24:
YY_RULE_SETUP
-#line 97 "H5LTanalyze.l"
+#line 102 "H5LTanalyze.l"
{return token(H5T_NATIVE_LONG_TOKEN);}
YY_BREAK
case 25:
YY_RULE_SETUP
-#line 98 "H5LTanalyze.l"
+#line 103 "H5LTanalyze.l"
{return token(H5T_NATIVE_ULONG_TOKEN);}
YY_BREAK
case 26:
YY_RULE_SETUP
-#line 99 "H5LTanalyze.l"
+#line 104 "H5LTanalyze.l"
{return token(H5T_NATIVE_LLONG_TOKEN);}
YY_BREAK
case 27:
YY_RULE_SETUP
-#line 100 "H5LTanalyze.l"
+#line 105 "H5LTanalyze.l"
{return token(H5T_NATIVE_ULLONG_TOKEN);}
YY_BREAK
case 28:
YY_RULE_SETUP
-#line 102 "H5LTanalyze.l"
+#line 107 "H5LTanalyze.l"
{return token(H5T_IEEE_F32BE_TOKEN);}
YY_BREAK
case 29:
YY_RULE_SETUP
-#line 103 "H5LTanalyze.l"
+#line 108 "H5LTanalyze.l"
{return token(H5T_IEEE_F32LE_TOKEN);}
YY_BREAK
case 30:
YY_RULE_SETUP
-#line 104 "H5LTanalyze.l"
+#line 109 "H5LTanalyze.l"
{return token(H5T_IEEE_F64BE_TOKEN);}
YY_BREAK
case 31:
YY_RULE_SETUP
-#line 105 "H5LTanalyze.l"
+#line 110 "H5LTanalyze.l"
{return token(H5T_IEEE_F64LE_TOKEN);}
YY_BREAK
case 32:
YY_RULE_SETUP
-#line 106 "H5LTanalyze.l"
+#line 111 "H5LTanalyze.l"
{return token(H5T_NATIVE_FLOAT_TOKEN);}
YY_BREAK
case 33:
YY_RULE_SETUP
-#line 107 "H5LTanalyze.l"
+#line 112 "H5LTanalyze.l"
{return token(H5T_NATIVE_DOUBLE_TOKEN);}
YY_BREAK
case 34:
YY_RULE_SETUP
-#line 108 "H5LTanalyze.l"
+#line 113 "H5LTanalyze.l"
{return token(H5T_NATIVE_LDOUBLE_TOKEN);}
YY_BREAK
case 35:
YY_RULE_SETUP
-#line 110 "H5LTanalyze.l"
+#line 115 "H5LTanalyze.l"
{return token(H5T_STRING_TOKEN);}
YY_BREAK
case 36:
YY_RULE_SETUP
-#line 111 "H5LTanalyze.l"
+#line 116 "H5LTanalyze.l"
{return token(STRSIZE_TOKEN);}
YY_BREAK
case 37:
YY_RULE_SETUP
-#line 112 "H5LTanalyze.l"
+#line 117 "H5LTanalyze.l"
{return token(STRPAD_TOKEN);}
YY_BREAK
case 38:
YY_RULE_SETUP
-#line 113 "H5LTanalyze.l"
+#line 118 "H5LTanalyze.l"
{return token(CSET_TOKEN);}
YY_BREAK
case 39:
YY_RULE_SETUP
-#line 114 "H5LTanalyze.l"
+#line 119 "H5LTanalyze.l"
{return token(CTYPE_TOKEN);}
YY_BREAK
case 40:
YY_RULE_SETUP
-#line 115 "H5LTanalyze.l"
+#line 120 "H5LTanalyze.l"
{return token(H5T_STR_NULLTERM_TOKEN);}
YY_BREAK
case 41:
YY_RULE_SETUP
-#line 116 "H5LTanalyze.l"
+#line 121 "H5LTanalyze.l"
{return token(H5T_STR_NULLPAD_TOKEN);}
YY_BREAK
case 42:
YY_RULE_SETUP
-#line 117 "H5LTanalyze.l"
+#line 122 "H5LTanalyze.l"
{return token(H5T_STR_SPACEPAD_TOKEN);}
YY_BREAK
case 43:
YY_RULE_SETUP
-#line 118 "H5LTanalyze.l"
+#line 123 "H5LTanalyze.l"
{return token(H5T_CSET_ASCII_TOKEN);}
YY_BREAK
case 44:
YY_RULE_SETUP
-#line 119 "H5LTanalyze.l"
+#line 124 "H5LTanalyze.l"
{return token(H5T_CSET_UTF8_TOKEN);}
YY_BREAK
case 45:
YY_RULE_SETUP
-#line 120 "H5LTanalyze.l"
+#line 125 "H5LTanalyze.l"
{return token(H5T_C_S1_TOKEN);}
YY_BREAK
case 46:
YY_RULE_SETUP
-#line 121 "H5LTanalyze.l"
+#line 126 "H5LTanalyze.l"
{return token(H5T_FORTRAN_S1_TOKEN);}
YY_BREAK
case 47:
YY_RULE_SETUP
-#line 122 "H5LTanalyze.l"
+#line 127 "H5LTanalyze.l"
{return token(H5T_VARIABLE_TOKEN);}
YY_BREAK
case 48:
YY_RULE_SETUP
-#line 124 "H5LTanalyze.l"
+#line 129 "H5LTanalyze.l"
{return token(H5T_COMPOUND_TOKEN);}
YY_BREAK
case 49:
YY_RULE_SETUP
-#line 125 "H5LTanalyze.l"
+#line 130 "H5LTanalyze.l"
{return token(H5T_ENUM_TOKEN);}
YY_BREAK
case 50:
YY_RULE_SETUP
-#line 126 "H5LTanalyze.l"
+#line 131 "H5LTanalyze.l"
{return token(H5T_ARRAY_TOKEN);}
YY_BREAK
case 51:
YY_RULE_SETUP
-#line 127 "H5LTanalyze.l"
+#line 132 "H5LTanalyze.l"
{return token(H5T_VLEN_TOKEN);}
YY_BREAK
case 52:
YY_RULE_SETUP
-#line 129 "H5LTanalyze.l"
+#line 134 "H5LTanalyze.l"
{return token(H5T_OPAQUE_TOKEN);}
YY_BREAK
case 53:
YY_RULE_SETUP
-#line 130 "H5LTanalyze.l"
+#line 135 "H5LTanalyze.l"
{return token(OPQ_SIZE_TOKEN);}
YY_BREAK
case 54:
YY_RULE_SETUP
-#line 131 "H5LTanalyze.l"
+#line 136 "H5LTanalyze.l"
{return token(OPQ_TAG_TOKEN);}
YY_BREAK
case 55:
YY_RULE_SETUP
-#line 133 "H5LTanalyze.l"
+#line 138 "H5LTanalyze.l"
{
if( is_str_size || (is_enum && is_enum_memb) ||
is_opq_size || (asindex>-1 && arr_stack[asindex].is_dim) ||
@@ -1350,7 +1355,7 @@ YY_RULE_SETUP
YY_BREAK
case 56:
YY_RULE_SETUP
-#line 143 "H5LTanalyze.l"
+#line 148 "H5LTanalyze.l"
{
/*if it's first quote, and is a compound field name or an enum symbol*/
if((is_opq_tag || is_enum || (csindex>-1 && cmpd_stack[csindex].is_field))
@@ -1364,7 +1369,7 @@ YY_RULE_SETUP
YY_BREAK
case 57:
YY_RULE_SETUP
-#line 153 "H5LTanalyze.l"
+#line 158 "H5LTanalyze.l"
{
yylval.sval = strdup(yytext);
BEGIN INITIAL;
@@ -1373,50 +1378,50 @@ YY_RULE_SETUP
YY_BREAK
case 58:
YY_RULE_SETUP
-#line 159 "H5LTanalyze.l"
+#line 164 "H5LTanalyze.l"
{return token('{');}
YY_BREAK
case 59:
YY_RULE_SETUP
-#line 160 "H5LTanalyze.l"
+#line 165 "H5LTanalyze.l"
{return token('}');}
YY_BREAK
case 60:
YY_RULE_SETUP
-#line 161 "H5LTanalyze.l"
+#line 166 "H5LTanalyze.l"
{return token('[');}
YY_BREAK
case 61:
YY_RULE_SETUP
-#line 162 "H5LTanalyze.l"
+#line 167 "H5LTanalyze.l"
{return token(']');}
YY_BREAK
case 62:
YY_RULE_SETUP
-#line 163 "H5LTanalyze.l"
+#line 168 "H5LTanalyze.l"
{return token(':');}
YY_BREAK
case 63:
YY_RULE_SETUP
-#line 164 "H5LTanalyze.l"
+#line 169 "H5LTanalyze.l"
{return token(';');}
YY_BREAK
case 64:
YY_RULE_SETUP
-#line 165 "H5LTanalyze.l"
+#line 170 "H5LTanalyze.l"
;
YY_BREAK
case 65:
YY_RULE_SETUP
-#line 166 "H5LTanalyze.l"
+#line 171 "H5LTanalyze.l"
{ return 0; }
YY_BREAK
case 66:
YY_RULE_SETUP
-#line 168 "H5LTanalyze.l"
+#line 173 "H5LTanalyze.l"
ECHO;
YY_BREAK
-#line 1399 "H5LTanalyze.c"
+#line 1404 "H5LTanalyze.c"
case YY_STATE_EOF(INITIAL):
case YY_STATE_EOF(TAG_STRING):
yyterminate();
@@ -2292,7 +2297,7 @@ int main()
return 0;
}
#endif
-#line 168 "H5LTanalyze.l"
+#line 173 "H5LTanalyze.l"
int my_yyinput(char *buf, int max_size)
{
diff --git a/hl/src/H5LTanalyze.l b/hl/src/H5LTanalyze.l
index 97cde91..15e316e 100644
--- a/hl/src/H5LTanalyze.l
+++ b/hl/src/H5LTanalyze.l
@@ -22,7 +22,12 @@ int my_yyinput(char *, int);
#undef YY_INPUT
#define YY_INPUT(b, r, ms) (r=my_yyinput(b, ms))
#define token(x) (int)x
+
+#ifdef YY_BUF_SIZE
+#undef YY_BUF_SIZE
+#endif
#define YY_BUF_SIZE 262144 /*Define read buffer to be 256K*/
+
extern char *myinput;
extern int input_len;
diff --git a/hl/test/dtype_file.txt b/hl/test/dtype_file.txt
new file mode 100644
index 0000000..0ccae94
--- /dev/null
+++ b/hl/test/dtype_file.txt
@@ -0,0 +1 @@
+H5T_COMPOUND { H5T_NATIVE_INT "rs#"; H5T_ENUM { H5T_NATIVE_CHAR; "A/A" 0; "A/C" 1; "A/T" 2; "A/G" 3; "A/N" 4; "C/A" 5; "C/C" 6; "C/T" 7; "C/G" 8; "C/N" 9; "T/A" 10; "T/C" 11; "T/T" 12; "T/G" 13; "T/N" 14; "G/A" 15; "G/C" 16; "G/T" 17; "G/G" 18; "G/N" 19; "N/A" 20; "N/C" 21; "N/T" 22; "N/G" 23; "N/N" 24; } "SNPAllelels"; H5T_NATIVE_INT "chrom"; H5T_NATIVE_INT "pos"; H5T_ENUM { H5T_NATIVE_CHAR; "+" 0; "-" 1; } "strand"; H5T_STRING { STRSIZE H5T_VARIABLE; STRPAD H5T_STR_NULLPAD; CSET H5T_CSET_ASCII; CTYPE H5T_C_S1; } "genome_build"; H5T_STRING { STRSIZE H5T_VARIABLE; STRPAD H5T_STR_NULLPAD; CSET H5T_CSET_ASCII; CTYPE H5T_C_S1; } "center"; H5T_STRING { STRSIZE H5T_VARIABLE; STRPAD H5T_STR_NULLPAD; CSET H5T_CSET_ASCII; CTYPE H5T_C_S1; } "protLSID"; H5T_STRING { STRSIZE H5T_VARIABLE; STRPAD H5T_STR_NULLPAD; CSET H5T_CSET_ASCII; CTYPE H5T_C_S1; }"assayLSID"; H5T_STRING { STRSIZE H5T_VARIABLE; STRPAD H5T_STR_NULLPAD; CSET H5T_CSET_ASCII; CTYPE H5T_C_S1; } "panelLSID"; H5T_ENUM { H5T_NATIVE_CHAR; "+" 0; "-" 1; } "QC_code"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA06985"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA06991"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA06993"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA06994"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07000"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07019"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07022"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07029"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07034"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07048"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07055"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07056"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07345"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07348"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA07357"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10830"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10831"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10835"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10838"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10839"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10846"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10847"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10851"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10854"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10855"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10856"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10857"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10859"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10860"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10861"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA10863"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11829"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11830"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11831"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11832"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11839"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11840"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11881"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11882"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11992"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11993"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11994"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA11995"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12003"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12004"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12005"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12006"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12043"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12044"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12056"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12057"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12144"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12145"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12146"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12154"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12155"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12156"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12234"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12236"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12239"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12248"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12249"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12264"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12707"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12716"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12717"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12740"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12750"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12751"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12752"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12753"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12760"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12761"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12762"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12763"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12801"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12802"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12812"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12813"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12814"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12815"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12864"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12865"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12872"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12873"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12874"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12875"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12878"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12891"; H5T_ENUM { H5T_NATIVE_CHAR; "AA" 0; "AC" 1; "AT" 2; "AG" 3; "AN" 4; "CA" 5; "CC" 6; "CT" 7; "CG" 8; "CN" 9; "TA" 10; "TC" 11; "TT" 12; "TG" 13; "TN" 14; "GA" 15; "GC" 16; "GT" 17; "GG" 18; "GN" 19; "NA" 20; "NC" 21; "NT" 22; "NG" 23; "NN" 24; } "NA12892";}
diff --git a/hl/test/test_lite.c b/hl/test/test_lite.c
index 705cf3a..07002e0 100644
--- a/hl/test/test_lite.c
+++ b/hl/test/test_lite.c
@@ -19,6 +19,7 @@
#define FILE_NAME "test_lite1.h5"
#define FILE_NAME2 "test_lite2.h5"
+#define INPUT_FILE "dtype_file.txt"
#define DSET0_NAME "2D int array"
#define DSET1_NAME "dataset char"
@@ -43,6 +44,9 @@
#define ATTR10_NAME "attr float"
#define ATTR11_NAME "attr double"
+/*Initial input buffer size for testing H5LTtext_to_dtype()*/
+#define BUF_SIZE 1024
+
static herr_t make_attributes( hid_t loc_id, const char* obj_name );
@@ -1513,6 +1517,87 @@ out:
}
/*-------------------------------------------------------------------------
+ * subroutine for test_text_dtype(): test_complicated_compound().
+ *-------------------------------------------------------------------------
+ */
+static int test_complicated_compound(void)
+{
+ hid_t dtype;
+ int nmembs;
+ H5T_class_t type_class;
+ size_t str_len;
+ char* line=NULL;
+ FILE *fp;
+ int size = 1024;
+ char *srcdir = getenv("srcdir"); /* the source directory */
+ char filename[1024]="";
+
+ TESTING3(" text for complicated compound types");
+
+ /* compose the name of the file to open, using the srcdir, if appropriate */
+ if(srcdir)
+ {
+ strcpy(filename, srcdir);
+ strcat(filename, "/");
+ }
+ strcat(filename, INPUT_FILE);
+
+ /* Open input file */
+ fp = fopen(filename, "r");
+ if(fp == NULL)
+ {
+ printf( "Could not find file %s. Try set $srcdir \n", filename);
+ goto out;
+ }
+
+ /* This part reads in the input as a string in a slow manner. GNU C
+ * Library has convenient function getline() but isn't available on
+ * all machines.
+ */
+ if((line = (char*)calloc(size, sizeof(char)))==NULL)
+ goto out;
+ if(fgets(line, size, fp)==NULL)
+ goto out;
+ while(strlen(line)==size-1) {
+ size *= 2;
+ if(line)
+ free(line);
+ if((line = (char*)calloc(size, sizeof(char)))==NULL)
+ goto out;
+ if(fseek(fp, 0L, SEEK_SET)!=0)
+ goto out;
+ if(fgets(line, size, fp)==NULL)
+ goto out;
+ }
+
+ fclose(fp);
+
+ if((dtype = H5LTtext_to_dtype(line, H5LT_DDL))<0)
+ goto out;
+
+ if((type_class = H5Tget_class(dtype))<0)
+ goto out;
+ if(type_class != H5T_COMPOUND)
+ goto out;
+
+ /* There should be 101 compound members */
+ if((nmembs = H5Tget_nmembers(dtype))<0)
+ goto out;
+ if(nmembs != 101)
+ goto out;
+
+ if(line)
+ free(line);
+
+ PASSED();
+ return 0;
+
+out:
+ H5_FAILED();
+ return -1;
+}
+
+/*-------------------------------------------------------------------------
* test H5LTtext_to_dtype function
*-------------------------------------------------------------------------
*/
@@ -1543,6 +1628,9 @@ static int test_text_dtype(void)
if(test_compounds()<0)
goto out;
+
+ if(test_complicated_compound()<0)
+ goto out;
return 0;
generated by cgit v0.12 at 2024-07-05 14:34:35 (GMT)