diff options
| -rw-r--r-- | fortran/testpar/ptesthdf5_fortran.f90 | 64 | ||||
| -rw-r--r-- | fortran/testpar/tcheck.f90 | 16 | ||||
| -rw-r--r-- | fortran/testpar/thdf5.f90 | 10 | ||||
| -rw-r--r-- | fortran/testpar/thyperslab_wr.f90 | 210 |
4 files changed, 300 insertions, 0 deletions
diff --git a/fortran/testpar/ptesthdf5_fortran.f90 b/fortran/testpar/ptesthdf5_fortran.f90 new file mode 100644 index 0000000..fb575ff --- /dev/null +++ b/fortran/testpar/ptesthdf5_fortran.f90 @@ -0,0 +1,64 @@ +! +! Main program for parallel HDF5 Fortran tests. + + PROGRAM PHDF5F90TEST + + USE HDF5 ! This module contains all necessary modules + USE THDF5 + USE MPI + + IMPLICIT NONE + INTEGER :: error ! Error flags + INTEGER :: error_1 = 0 ! Error flags + ! + ! MPI definitions and calls. + ! + INTEGER :: mpierror ! MPI error flag + INTEGER :: comm, info + INTEGER :: mpi_size, mpi_rank + comm = MPI_COMM_WORLD + info = MPI_INFO_NULL + CALL MPI_INIT(mpierror) + CALL MPI_COMM_SIZE(comm, mpi_size, mpierror) + CALL MPI_COMM_RANK(comm, mpi_rank, mpierror) + ! + ! Check that datasets can be divided into equal parts by the processes. + ! + if ( (mod(DIM1, mpi_size) .ne. 0) .or. (mod(DIM2, mpi_size) .ne. 0)) then + if (mpi_rank .eq. 0) then + write(*,*) "Dimensions must be mupltiples of # of processors" + write(*,*) "Exiting..." + goto 1000 + endif + endif + ! + ! Initialize FORTRAN predefined datatypes + ! + CALL h5init_types_f(error) + if (mpi_rank .eq. 0) then + write(*,*) '===========================================' + write(*,*) ' Parallel Fortran Tests ' + write(*,*) '===========================================' + write(*,*) + endif + if (mpi_rank .eq. 0) then + write(*,*) 'Writing/reading dataset by hyperslabs' + endif + CALL dataset_wr_by_hyperslabs(error_1) + if (error_1 .ne. 0 ) write(*,*) 'Process ', mpi_rank, 'reports failure' + if (mpi_rank .eq. 0) then + write(*,*) + write(*,*) '===========================================' + write(*,*) ' Parallel Fortran Tests finished ' + write(*,*) '===========================================' + endif + ! + ! Close FORTRAN predefined datatypes. + ! + CALL h5close_types_f(error) + +1000 continue + + CALL MPI_FINALIZE(mpierror) + + END PROGRAM PHDF5F90TEST diff --git a/fortran/testpar/tcheck.f90 b/fortran/testpar/tcheck.f90 new file mode 100644 index 0000000..978c832 --- /dev/null +++ b/fortran/testpar/tcheck.f90 @@ -0,0 +1,16 @@ +! +! +! This module contains check subroutine which is used in +! all the fortran h5 test files +! + + SUBROUTINE check(string,error,total_error) + CHARACTER(LEN=*) :: string + INTEGER :: error, total_error + if (error .lt. 0) then + total_error=total_error+1 + write(*,*) string, " failed" + endif + RETURN + END SUBROUTINE check + diff --git a/fortran/testpar/thdf5.f90 b/fortran/testpar/thdf5.f90 new file mode 100644 index 0000000..9552df8 --- /dev/null +++ b/fortran/testpar/thdf5.f90 @@ -0,0 +1,10 @@ + MODULE THDF5 + USE HDF5 + USE MPI + +! Dataset dimensions + + INTEGER, PARAMETER :: DIM1 = 64, & + DIM2 = 128 + + END MODULE THDF5 diff --git a/fortran/testpar/thyperslab_wr.f90 b/fortran/testpar/thyperslab_wr.f90 new file mode 100644 index 0000000..a42c872 --- /dev/null +++ b/fortran/testpar/thyperslab_wr.f90 @@ -0,0 +1,210 @@ +! +! This test writes/reads dataset by hyperslabs collectively. + + SUBROUTINE dataset_wr_by_hyperslabs(total_error) + USE THDF5 + IMPLICIT NONE + + CHARACTER(LEN=7), PARAMETER :: filename = "sdsf.h5" ! File name + CHARACTER(LEN=8), PARAMETER :: dsetname = "IntArray" ! Dataset name + + INTEGER(HID_T) :: file_id ! File identifier + INTEGER(HID_T) :: dset_id ! Dataset identifier + INTEGER(HID_T) :: filespace ! Dataspace identifier in file + INTEGER(HID_T) :: memspace ! Dataspace identifier in memory + INTEGER(HID_T) :: plist_id ! Property list identifier + + INTEGER(HSIZE_T), DIMENSION(2) :: dimsf = (/DIM1,DIM2/) ! Dataset dimensions. + + INTEGER(HSIZE_T), DIMENSION(2) :: count + INTEGER(HSIZE_T), DIMENSION(2) :: offset + INTEGER, ALLOCATABLE :: data (:,:) ! Data to write + INTEGER :: rank = 2 ! Dataset rank + + INTEGER :: total_error, error ! Error flags + ! + ! MPI definitions and calls. + ! + INTEGER :: mpierror ! MPI error flag + INTEGER :: comm, info + INTEGER :: mpi_size, mpi_rank + comm = MPI_COMM_WORLD + info = MPI_INFO_NULL + CALL MPI_COMM_SIZE(comm, mpi_size, mpierror) + CALL MPI_COMM_RANK(comm, mpi_rank, mpierror) + ! + ! Setup file access property list with parallel I/O access. + ! + CALL h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, error) + CALL check("h5pcreate_f", error, total_error) + CALL h5pset_fapl_mpio_f(plist_id, comm, info, error) + CALL check("h5pset_fapl_mpio_f", error, total_error) + + ! + ! Create the file collectively. + ! + CALL h5fcreate_f(filename, H5F_ACC_TRUNC_F, file_id, error, access_prp = plist_id) + CALL check("h5fcreate_f", error, total_error) + CALL h5pclose_f(plist_id, error) + CALL check("h5pclose_f", error, total_error) + ! + ! Create the data space for the dataset. + ! + CALL h5screate_simple_f(rank, dimsf, filespace, error) + CALL check("h5screate_simple_f", error, total_error) + + ! + ! Create the dataset with default properties. + ! + CALL h5dcreate_f(file_id, dsetname, H5T_NATIVE_INTEGER, filespace, & + dset_id, error) + CALL check("h5dcreate_f", error, total_error) + CALL h5sclose_f(filespace, error) + CALL check("h5sclose_f", error, total_error) + ! + ! Each process defines dataset in memory and writes it to the hyperslab + ! in the file. + ! + count(1) = dimsf(1) + count(2) = dimsf(2)/mpi_size + offset(1) = 0 + offset(2) = mpi_rank * count(2) + CALL h5screate_simple_f(rank, count, memspace, error) + CALL check("h5screate_simple_f", error, total_error) + ! + ! Select hyperslab in the file. + ! + CALL h5dget_space_f(dset_id, filespace, error) + CALL check("h5dget_space_f", error, total_error) + CALL h5sselect_hyperslab_f (filespace, H5S_SELECT_SET_F, offset, count, error) + CALL check("h5sselect_hyperslab_f", error, total_error) + ! + ! Initialize data buffer with trivial data. + ! + ALLOCATE ( data(count(1),count(2))) + data = mpi_rank + 10 + ! + ! Create property list for collective dataset write + ! + CALL h5pcreate_f(H5P_DATASET_XFER_F, plist_id, error) + CALL check("h5pcreate_f", error, total_error) + CALL h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, error) + CALL check("h5pset_dxpl_mpio_f", error, total_error) + + ! + ! Write the dataset collectively. + ! + CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, data, error, & + file_space_id = filespace, mem_space_id = memspace, xfer_prp = plist_id) + CALL check("h5dwrite_f", error, total_error) + ! + ! Deallocate data buffer. + ! + DEALLOCATE(data) + + ! + ! Close dataspaces. + ! + CALL h5sclose_f(filespace, error) + CALL check("h5sclose_f", error, total_error) + CALL h5sclose_f(memspace, error) + CALL check("h5sclose_f", error, total_error) + + ! + ! Close the dataset. + ! + CALL h5dclose_f(dset_id, error) + CALL check("h5dclose_f", error, total_error) + + CALL h5pclose_f(plist_id, error) + CALL check("h5pclose_f", error, total_error) + + ! + ! Close the file. + ! + CALL h5fclose_f(file_id, error) + CALL check("h5fclose_f", error, total_error) + ! + ! Reopen the file with || access. + ! + CALL h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, error) + CALL check("h5pcreate_f", error, total_error) + CALL h5pset_fapl_mpio_f(plist_id, comm, info, error) + CALL check("h5pset_fapl_mpio_f", error, total_error) + CALL h5fopen_f(filename, H5F_ACC_RDWR_F, file_id, plist_id) + CALL check("h5fopen_f", error, total_error) + CALL h5pclose_f(plist_id, error) + CALL check("h5pclose_f", error, total_error) + ! + ! Open dataset. + ! + CALL h5dopen_f(file_id, dsetname, dset_id, error) + CALL check("h5dopen_f", error, total_error) + + ! + ! Each process defines dataset in memory and reads hyperslab + ! from the file. + ! + count(1) = dimsf(1) + count(2) = dimsf(2)/mpi_size + offset(1) = 0 + offset(2) = mpi_rank * count(2) + CALL h5screate_simple_f(rank, count, memspace, error) + CALL check("h5screate_simple_f", error, total_error) + ! + ! Select hyperslab in the file. + ! + CALL h5dget_space_f(dset_id, filespace, error) + CALL check("h5dget_space_f", error, total_error) + CALL h5sselect_hyperslab_f (filespace, H5S_SELECT_SET_F, offset, count, error) + CALL check("h5sselect_hyperslab_f", error, total_error) + ! + ! Allocate data buffer. + ! + ALLOCATE ( data(count(1),count(2))) + ALLOCATE ( data_out(count(1),count(2))) + data = mpi_rank + 10 + ! + ! Create property list for collective dataset write + ! + CALL h5pcreate_f(H5P_DATASET_XFER_F, plist_id, error) + CALL check("h5pcreate_f", error, total_error) + CALL h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, error) + CALL check("h5pset_dxpl_mpio_f", error, total_error) + + ! + ! Write the dataset collectively. + ! + CALL h5dread_f(dset_id, H5T_NATIVE_INTEGER, data_out, error, & + file_space_id = filespace, mem_space_id = memspace, xfer_prp = plist_id) + CALL check("h5dread_f", error, total_error) + if( data .ne .data_out) total_error = total_error + 1 + ! + ! Deallocate data buffer. + ! + DEALLOCATE(data) + DEALLOCATE(data_out) + ! + ! Close dataspaces. + ! + CALL h5sclose_f(filespace, error) + CALL check("h5sclose_f", error, total_error) + CALL h5sclose_f(memspace, error) + CALL check("h5sclose_f", error, total_error) + ! + ! Close property list. + ! + CALL h5pclose_f(plist_id, error) + CALL check("h5pclose_f", error, total_error) + ! + ! Close dataset. + ! + CALL h5dclose_f(dset_id, error) + CALL check("h5dclose_f", error, total_error) + ! + ! Close the file. + ! + CALL h5fclose_f(file_id, error) + CALL check("h5fclose_f", error, total_error) + + END SUBROUTINE dataset_wr_by_hyperslabs |