summaryrefslogtreecommitdiffstats
diff options
context:
space:
mode:
-rw-r--r--fortran/testpar/Makefile.am10
-rw-r--r--fortran/testpar/Makefile.in39
-rw-r--r--fortran/testpar/hyper.f90204
-rw-r--r--fortran/testpar/ptest.f90107
-rw-r--r--fortran/testpar/ptesthdf5_fortran.f9086
-rw-r--r--fortran/testpar/thdf5.f9025
-rw-r--r--fortran/testpar/thyperslab_wr.f90253
7 files changed, 335 insertions, 389 deletions
diff --git a/fortran/testpar/Makefile.am b/fortran/testpar/Makefile.am
index ed1e4bc..b6b6b3f 100644
--- a/fortran/testpar/Makefile.am
+++ b/fortran/testpar/Makefile.am
@@ -26,7 +26,7 @@ AM_FCFLAGS=-I$(top_srcdir)/fortran/src -I$(top_srcdir)/fortran/test $(F9XMODFLAG
AM_LDFLAGS=-static
# These are our main targets
-TEST_PROG_PARA=ptesthdf5_fortran
+TEST_PROG_PARA=parallel_test
check_PROGRAMS=$(TEST_PROG_PARA)
# Temporary files
@@ -34,7 +34,7 @@ MOSTLYCLEAN=ParaEg[123].h5f
DISTCLEAN=go
# Test source files
-ptesthdf5_fortran_SOURCES=thdf5.f90 ptesthdf5_fortran.f90 thyperslab_wr.f90
+parallel_test_SOURCES=ptest.f90 hyper.f90
# The tests depend on several libraries.
LDADD=$(LIBH5FTEST) $(LIBH5TEST) $(LIBH5F) $(LIBHDF5)
@@ -67,8 +67,8 @@ uninstall-local:
# Put in dependencies to the THDF5 module so that things will be built
# in the correct order.
-thdf5.lo: thdf5.o
-thyperslab_wr.o: $(srcdir)/thyperslab_wr.f90 thdf5.lo
-ptesthdf5_fortran.o: $(srcdir)/ptesthdf5_fortran.f90 thdf5.lo
+#thdf5.lo: thdf5.o
+#thyperslab_wr.o: $(srcdir)/thyperslab_wr.f90 thdf5.lo
+#ptesthdf5_fortran.o: $(srcdir)/ptesthdf5_fortran.f90 thdf5.lo
include $(top_srcdir)/config/conclude.am
diff --git a/fortran/testpar/Makefile.in b/fortran/testpar/Makefile.in
index 1b69551..32b3f69 100644
--- a/fortran/testpar/Makefile.in
+++ b/fortran/testpar/Makefile.in
@@ -29,7 +29,7 @@
#
# HDF5 Fortran Parallel Library Test Makefile(.in)
#
-SOURCES = $(ptesthdf5_fortran_SOURCES)
+SOURCES = $(parallel_test_SOURCES)
srcdir = @srcdir@
top_srcdir = @top_srcdir@
@@ -65,17 +65,16 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/src/H5config.h
CONFIG_CLEAN_FILES =
-am__EXEEXT_1 = ptesthdf5_fortran$(EXEEXT)
-am_ptesthdf5_fortran_OBJECTS = thdf5.$(OBJEXT) \
- ptesthdf5_fortran.$(OBJEXT) thyperslab_wr.$(OBJEXT)
-ptesthdf5_fortran_OBJECTS = $(am_ptesthdf5_fortran_OBJECTS)
-ptesthdf5_fortran_LDADD = $(LDADD)
+am__EXEEXT_1 = parallel_test$(EXEEXT)
+am_parallel_test_OBJECTS = ptest.$(OBJEXT) hyper.$(OBJEXT)
+parallel_test_OBJECTS = $(am_parallel_test_OBJECTS)
+parallel_test_LDADD = $(LDADD)
am__DEPENDENCIES_1 = \
$(top_builddir)/fortran/test/libh5test_fortran.la
am__DEPENDENCIES_2 = $(top_builddir)/test/libh5test.la
am__DEPENDENCIES_3 = $(top_builddir)/fortran/src/libhdf5_fortran.la
am__DEPENDENCIES_4 = $(top_builddir)/src/libhdf5.la
-ptesthdf5_fortran_DEPENDENCIES = $(am__DEPENDENCIES_1) \
+parallel_test_DEPENDENCIES = $(am__DEPENDENCIES_1) \
$(am__DEPENDENCIES_2) $(am__DEPENDENCIES_3) \
$(am__DEPENDENCIES_4)
DEFAULT_INCLUDES = -I. -I$(srcdir) -I$(top_builddir)/src
@@ -84,8 +83,8 @@ LTFCCOMPILE = $(LIBTOOL) --mode=compile $(FC) $(AM_FCFLAGS) $(FCFLAGS)
FCLD = $(FC)
FCLINK = $(LIBTOOL) --mode=link $(FCLD) $(AM_FCFLAGS) $(FCFLAGS) \
$(AM_LDFLAGS) $(LDFLAGS) -o $@
-SOURCES = $(ptesthdf5_fortran_SOURCES)
-DIST_SOURCES = $(ptesthdf5_fortran_SOURCES)
+SOURCES = $(parallel_test_SOURCES)
+DIST_SOURCES = $(parallel_test_SOURCES)
ETAGS = etags
CTAGS = ctags
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
@@ -303,14 +302,14 @@ AM_FCFLAGS = -I$(top_srcdir)/fortran/src -I$(top_srcdir)/fortran/test $(F9XMODFL
AM_LDFLAGS = -static
# These are our main targets
-TEST_PROG_PARA = ptesthdf5_fortran
+TEST_PROG_PARA = parallel_test
# Temporary files
MOSTLYCLEAN = ParaEg[123].h5f
DISTCLEAN = go
# Test source files
-ptesthdf5_fortran_SOURCES = thdf5.f90 ptesthdf5_fortran.f90 thyperslab_wr.f90
+parallel_test_SOURCES = ptest.f90 hyper.f90
# The tests depend on several libraries.
LDADD = $(LIBH5FTEST) $(LIBH5TEST) $(LIBH5F) $(LIBHDF5)
@@ -370,9 +369,9 @@ clean-checkPROGRAMS:
echo " rm -f $$p $$f"; \
rm -f $$p $$f ; \
done
-ptesthdf5_fortran$(EXEEXT): $(ptesthdf5_fortran_OBJECTS) $(ptesthdf5_fortran_DEPENDENCIES)
- @rm -f ptesthdf5_fortran$(EXEEXT)
- $(FCLINK) $(ptesthdf5_fortran_LDFLAGS) $(ptesthdf5_fortran_OBJECTS) $(ptesthdf5_fortran_LDADD) $(LIBS)
+parallel_test$(EXEEXT): $(parallel_test_OBJECTS) $(parallel_test_DEPENDENCIES)
+ @rm -f parallel_test$(EXEEXT)
+ $(FCLINK) $(parallel_test_LDFLAGS) $(parallel_test_OBJECTS) $(parallel_test_LDADD) $(LIBS)
mostlyclean-compile:
-rm -f *.$(OBJEXT)
@@ -593,12 +592,6 @@ uninstall-local:
fi; \
fi
-# Put in dependencies to the THDF5 module so that things will be built
-# in the correct order.
-thdf5.lo: thdf5.o
-thyperslab_wr.o: $(srcdir)/thyperslab_wr.f90 thdf5.lo
-ptesthdf5_fortran.o: $(srcdir)/ptesthdf5_fortran.f90 thdf5.lo
-
# lib/progs/tests targets recurse into subdirectories. build-* targets
# build files in this directory.
build-lib: $(LIB)
@@ -719,6 +712,12 @@ check-vfd:
HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check; \
fi; \
done
+
+# Put in dependencies to the THDF5 module so that things will be built
+# in the correct order.
+#thdf5.lo: thdf5.o
+#thyperslab_wr.o: $(srcdir)/thyperslab_wr.f90 thdf5.lo
+#ptesthdf5_fortran.o: $(srcdir)/ptesthdf5_fortran.f90 thdf5.lo
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
diff --git a/fortran/testpar/hyper.f90 b/fortran/testpar/hyper.f90
new file mode 100644
index 0000000..79ede6a
--- /dev/null
+++ b/fortran/testpar/hyper.f90
@@ -0,0 +1,204 @@
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+! Copyright by the Board of Trustees of the University of Illinois. *
+! All rights reserved. *
+! *
+! This file is part of HDF5. The full HDF5 copyright notice, including *
+! terms governing use, modification, and redistribution, is contained in *
+! the files COPYING and Copyright.html. COPYING can be found at the root *
+! of the source code distribution tree; Copyright.html can be found at the *
+! root level of an installed copy of the electronic HDF5 document set and *
+! is linked from the top-level documents page. It can also be found at *
+! http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+! access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+
+
+!//////////////////////////////////////////////////////////
+! writes/reads dataset by hyperslabs
+!//////////////////////////////////////////////////////////
+
+subroutine hyper(lenght,do_collective,do_chunk,nerrors)
+use hdf5
+implicit none
+include 'mpif.h'
+
+integer, intent(in) :: lenght ! array lenght
+logical, intent(in) :: do_collective ! use collective I/O
+logical, intent(in) :: do_chunk ! use chunking
+integer, intent(inout) :: nerrors ! number of errors
+integer :: mpierror ! MPI hdferror flag
+integer :: hdferror ! HDF hdferror flag
+integer :: mpi_size ! number of processes in the group of communicator
+integer :: mpi_rank ! rank of the calling process in the communicator
+integer(hsize_t), dimension(1) :: dims ! dataset dimensions
+integer(hsize_t), dimension(1) :: cdims ! chunk dimensions
+integer, allocatable :: wbuf(:) ! write buffer
+integer, allocatable :: rbuf(:) ! read buffer
+integer(hsize_t), dimension(1) :: counti ! hyperslab selection
+integer(hsize_t), dimension(1) :: start ! hyperslab selection
+integer(hid_t) :: fapl_id ! file access identifier
+integer(hid_t) :: dxpl_id ! dataset transfer property list
+integer(hid_t) :: dcpl_id ! dataset creation property list
+integer(hid_t) :: file_id ! file identifier
+integer(hid_t) :: dset_id ! dataset identifier
+integer(hid_t) :: fspace_id ! file space identifier
+integer(hid_t) :: mspace_id ! memory space identifier
+integer :: istart ! start position in array
+integer :: iend ! end position in array
+integer :: icount ! number of elements in array
+integer :: i
+
+
+call mpi_comm_rank( MPI_COMM_WORLD, mpi_rank, mpierror )
+call mpi_comm_size( MPI_COMM_WORLD, mpi_size, mpierror )
+
+!//////////////////////////////////////////////////////////
+! initialize the array data between the processes (3)
+! for the 12 size array we get
+! p0 = 1,2,3,4
+! p1 = 5,6,7,8
+! p2 = 9,10,11,12
+!//////////////////////////////////////////////////////////
+
+allocate(wbuf(0:lenght-1))
+allocate(rbuf(0:lenght-1))
+
+icount = lenght/mpi_size ! divide the array by the number of processes
+istart = mpi_rank*icount ! start position
+iend = istart + icount ! end position
+
+do i = istart, iend-1
+ wbuf(i) = i
+enddo
+
+!//////////////////////////////////////////////////////////
+! HDF5 I/O
+!//////////////////////////////////////////////////////////
+
+dims(1) = lenght
+cdims(1) = lenght/mpi_size ! define chunks as the number of processes
+
+call h5pcreate_f(H5P_FILE_ACCESS_F, fapl_id, hdferror)
+call h5pset_fapl_mpio_f(fapl_id, MPI_COMM_WORLD, MPI_INFO_NULL, hdferror)
+call h5fcreate_f("parf.h5", H5F_ACC_TRUNC_F, file_id, hdferror, access_prp = fapl_id)
+
+call h5screate_simple_f(1, dims, fspace_id, hdferror)
+call h5screate_simple_f(1, dims, mspace_id, hdferror)
+
+!//////////////////////////////////////////////////////////
+! modify dataset creation properties to enable chunking
+!//////////////////////////////////////////////////////////
+
+call h5pcreate_f(H5P_DATASET_CREATE_F, dcpl_id, hdferror)
+if (do_chunk) call h5pset_chunk_f(dcpl_id, 1, cdims, hdferror)
+
+!//////////////////////////////////////////////////////////
+! create the dataset
+!//////////////////////////////////////////////////////////
+
+call h5dcreate_f(file_id, "dset", H5T_NATIVE_INTEGER, fspace_id, dset_id, hdferror, dcpl_id)
+
+!//////////////////////////////////////////////////////////
+! define hyperslab
+!//////////////////////////////////////////////////////////
+
+counti(1) = icount
+start(1) = istart
+
+!//////////////////////////////////////////////////////////
+! select hyperslab in memory
+!//////////////////////////////////////////////////////////
+
+call h5sselect_hyperslab_f(mspace_id, H5S_SELECT_SET_F, start, counti, hdferror)
+
+!//////////////////////////////////////////////////////////
+! select hyperslab in the file
+!//////////////////////////////////////////////////////////
+
+call h5sselect_hyperslab_f(fspace_id, H5S_SELECT_SET_F, start, counti, hdferror)
+
+!//////////////////////////////////////////////////////////
+! create a property list for collective dataset write
+!//////////////////////////////////////////////////////////
+
+call h5pcreate_f(H5P_DATASET_XFER_F, dxpl_id, hdferror)
+if (do_collective) call h5pset_dxpl_mpio_f(dxpl_id, H5FD_MPIO_COLLECTIVE_F, hdferror)
+
+!//////////////////////////////////////////////////////////
+! write dataset
+!//////////////////////////////////////////////////////////
+
+call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, wbuf, dims, hdferror, file_space_id = fspace_id, mem_space_id = mspace_id, xfer_prp = dxpl_id)
+
+!//////////////////////////////////////////////////////////
+! close HDF5 I/O
+!//////////////////////////////////////////////////////////
+
+call h5sclose_f(fspace_id, hdferror)
+call h5dclose_f(dset_id, hdferror)
+call h5pclose_f(fapl_id, hdferror)
+call h5fclose_f(file_id, hdferror)
+
+!//////////////////////////////////////////////////////////
+! reopen file with read access
+!//////////////////////////////////////////////////////////
+
+call h5pcreate_f(H5P_FILE_ACCESS_F, fapl_id, hdferror)
+call h5pset_fapl_mpio_f(fapl_id, MPI_COMM_WORLD, MPI_INFO_NULL, hdferror)
+call h5fopen_f("parf.h5", H5F_ACC_RDWR_F, file_id, hdferror, access_prp = fapl_id)
+
+call h5screate_simple_f(1, dims, fspace_id, hdferror)
+call h5screate_simple_f(1, dims, mspace_id, hdferror)
+call h5dopen_f(file_id, "dset", dset_id, hdferror)
+
+!//////////////////////////////////////////////////////////
+! select hyperslab in memory
+!//////////////////////////////////////////////////////////
+
+call h5sselect_hyperslab_f(mspace_id, H5S_SELECT_SET_F, start, counti, hdferror)
+
+!//////////////////////////////////////////////////////////
+! select hyperslab in the file
+!//////////////////////////////////////////////////////////
+
+call h5sselect_hyperslab_f(fspace_id, H5S_SELECT_SET_F, start, counti, hdferror)
+
+!//////////////////////////////////////////////////////////
+! create a property list for collective dataset write
+!//////////////////////////////////////////////////////////
+
+call h5pcreate_f(H5P_DATASET_XFER_F, dxpl_id, hdferror)
+if (do_collective) call h5pset_dxpl_mpio_f(dxpl_id, H5FD_MPIO_COLLECTIVE_F, hdferror)
+
+!//////////////////////////////////////////////////////////
+! read dataset
+!//////////////////////////////////////////////////////////
+
+call h5dread_f(dset_id, H5T_NATIVE_INTEGER, rbuf, dims, hdferror, file_space_id = fspace_id, mem_space_id = mspace_id, xfer_prp = dxpl_id)
+
+!//////////////////////////////////////////////////////////
+! close HDF5 I/O
+!//////////////////////////////////////////////////////////
+
+call h5sclose_f(fspace_id, hdferror)
+call h5dclose_f(dset_id, hdferror)
+call h5pclose_f(fapl_id, hdferror)
+call h5fclose_f(file_id, hdferror)
+
+
+!//////////////////////////////////////////////////////////
+! compare read and write data. each process compares a subset of the array
+!//////////////////////////////////////////////////////////
+
+do i = istart, iend-1
+ if( wbuf(i) /= rbuf(i)) then
+ write(*,*) 'buffers differs at ', i, rbuf(i), wbuf(i)
+ nerrors = nerrors + 1
+ endif
+enddo
+
+deallocate(wbuf)
+deallocate(rbuf)
+
+end subroutine hyper
+
diff --git a/fortran/testpar/ptest.f90 b/fortran/testpar/ptest.f90
new file mode 100644
index 0000000..21948795
--- /dev/null
+++ b/fortran/testpar/ptest.f90
@@ -0,0 +1,107 @@
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+! Copyright by the Board of Trustees of the University of Illinois. *
+! All rights reserved. *
+! *
+! This file is part of HDF5. The full HDF5 copyright notice, including *
+! terms governing use, modification, and redistribution, is contained in *
+! the files COPYING and Copyright.html. COPYING can be found at the root *
+! of the source code distribution tree; Copyright.html can be found at the *
+! root level of an installed copy of the electronic HDF5 document set and *
+! is linked from the top-level documents page. It can also be found at *
+! http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+! access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+
+!//////////////////////////////////////////////////////////
+! main program for parallel HDF5 Fortran tests
+!//////////////////////////////////////////////////////////
+
+program parallel_test
+use hdf5
+implicit none
+include 'mpif.h'
+
+integer :: mpierror ! MPI hdferror flag
+integer :: hdferror ! HDF hdferror flag
+logical :: do_collective ! use collective MPI I/O
+logical :: do_chunk ! use chunking
+integer :: nerrors = 0 ! number of errors
+integer :: mpi_rank ! rank of the calling process in the communicator
+integer :: lenght = 12000 ! lenght of array
+
+!//////////////////////////////////////////////////////////
+! initialize MPI
+!//////////////////////////////////////////////////////////
+
+call mpi_init(mpierror)
+call mpi_comm_rank( MPI_COMM_WORLD, mpi_rank, mpierror )
+
+!//////////////////////////////////////////////////////////
+! initialize the HDF5 fortran interface
+!//////////////////////////////////////////////////////////
+
+call h5open_f(hdferror)
+
+!//////////////////////////////////////////////////////////
+! test write/read dataset by hyperslabs with independent MPI I/O
+!//////////////////////////////////////////////////////////
+
+if (mpi_rank == 0) write(*,*) 'Writing/reading dataset by hyperslabs (contiguous layout, independent MPI I/O)'
+
+do_collective = .false.
+do_chunk = .false.
+call hyper(lenght,do_collective,do_chunk,nerrors)
+
+!//////////////////////////////////////////////////////////
+! test write/read dataset by hyperslabs with collective MPI I/O
+!//////////////////////////////////////////////////////////
+
+if (mpi_rank == 0) write(*,*) 'Writing/reading dataset by hyperslabs (contiguous layout, collective MPI I/O)'
+
+do_collective = .true.
+do_chunk = .false.
+call hyper(lenght,do_collective,do_chunk,nerrors)
+
+!//////////////////////////////////////////////////////////
+! test write/read dataset by hyperslabs with independent MPI I/O
+!//////////////////////////////////////////////////////////
+
+if (mpi_rank == 0) write(*,*) 'Writing/reading dataset by hyperslabs (chunk layout, independent MPI I/O)'
+
+do_collective = .false.
+do_chunk = .true.
+call hyper(lenght,do_collective,do_chunk,nerrors)
+
+!//////////////////////////////////////////////////////////
+! test write/read dataset by hyperslabs with collective MPI I/O
+!//////////////////////////////////////////////////////////
+
+if (mpi_rank == 0) write(*,*) 'Writing/reading dataset by hyperslabs (chunk layout, collective MPI I/O)'
+
+do_collective = .true.
+do_chunk = .true.
+call hyper(lenght,do_collective,do_chunk,nerrors)
+
+!//////////////////////////////////////////////////////////
+! close HDF5 interface
+!//////////////////////////////////////////////////////////
+
+call h5close_f(hdferror)
+
+!//////////////////////////////////////////////////////////
+! close MPI
+!//////////////////////////////////////////////////////////
+
+if (nerrors == 0) then
+ call mpi_finalize(mpierror)
+else
+ write(*,*) 'Errors detected in process ', mpi_rank
+ call mpi_abort(MPI_COMM_WORLD, 1, mpierror)
+endif
+
+!//////////////////////////////////////////////////////////
+! end main program
+!//////////////////////////////////////////////////////////
+
+end program parallel_test
+
diff --git a/fortran/testpar/ptesthdf5_fortran.f90 b/fortran/testpar/ptesthdf5_fortran.f90
deleted file mode 100644
index 0edb0ff..0000000
--- a/fortran/testpar/ptesthdf5_fortran.f90
+++ /dev/null
@@ -1,86 +0,0 @@
-! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
-! Copyright by the Board of Trustees of the University of Illinois. *
-! All rights reserved. *
-! *
-! This file is part of HDF5. The full HDF5 copyright notice, including *
-! terms governing use, modification, and redistribution, is contained in *
-! the files COPYING and Copyright.html. COPYING can be found at the root *
-! of the source code distribution tree; Copyright.html can be found at the *
-! root level of an installed copy of the electronic HDF5 document set and *
-! is linked from the top-level documents page. It can also be found at *
-! http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
-! access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
-! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
-!
-!
-! Main program for parallel HDF5 Fortran tests.
-
- PROGRAM PHDF5F90TEST
-
- USE HDF5 ! This module contains all necessary modules
- USE THDF5
-! USE MPI
-
- IMPLICIT NONE
- INTEGER :: h5retcode ! HDF5 call return code
- INTEGER :: nerrors = 0 ! Error flags
- !
- ! MPI definitions and calls.
- !
- INTEGER :: mpiretcode ! MPI calls return code
- INTEGER :: comm, info
- INTEGER :: mpi_size, mpi_rank
- LOGICAL :: cleanup = .TRUE.
-! LOGICAL :: cleanup = .FALSE.
- comm = MPI_COMM_WORLD
- info = MPI_INFO_NULL
- CALL MPI_INIT(mpiretcode)
- CALL MPI_COMM_SIZE(comm, mpi_size, mpiretcode)
- CALL MPI_COMM_RANK(comm, mpi_rank, mpiretcode)
- !
- ! Check that datasets can be divided into equal parts by the processes.
- !
- if ( (mod(DIM1, mpi_size) .ne. 0) .or. (mod(DIM2, mpi_size) .ne. 0)) then
- if (mpi_rank .eq. 0) then
- write(*,*) "Number of processors is", mpi_size
- write(*,*) "It must be a factor of ", DIM1, " and ", DIM2
- write(*,*) "Exiting..."
- endif
- nerrors = nerrors + 1
- goto 1000
- endif
- !
- ! Initialize FORTRAN predefined datatypes
- !
- CALL h5open_f(h5retcode)
- if (mpi_rank .eq. 0) then
- write(*,*) '==========================================='
- write(*,*) ' Parallel Fortran Tests '
- write(*,*) '==========================================='
- write(*,*)
- endif
- if (mpi_rank .eq. 0) then
- write(*,*) 'Writing/reading dataset by hyperslabs'
- endif
- CALL dataset_wr_by_hyperslabs(cleanup, nerrors)
- if (nerrors .ne. 0 ) write(*,*) 'Process ', mpi_rank, 'reports failure'
- if (mpi_rank .eq. 0) then
- write(*,*)
- write(*,*) '==========================================='
- write(*,*) ' Parallel Fortran Tests finished '
- write(*,*) '==========================================='
- endif
- !
- ! Close FORTRAN predefined datatypes.
- !
- CALL h5close_f(h5retcode)
-
-1000 continue
-
- if (nerrors .eq. 0) then
- CALL MPI_FINALIZE(mpiretcode)
- else
- CALL MPI_ABORT(MPI_COMM_WORLD, 1, mpiretcode)
- endif
-
- END PROGRAM PHDF5F90TEST
diff --git a/fortran/testpar/thdf5.f90 b/fortran/testpar/thdf5.f90
deleted file mode 100644
index 9dc6cab..0000000
--- a/fortran/testpar/thdf5.f90
+++ /dev/null
@@ -1,25 +0,0 @@
-! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
-! Copyright by the Board of Trustees of the University of Illinois. *
-! All rights reserved. *
-! *
-! This file is part of HDF5. The full HDF5 copyright notice, including *
-! terms governing use, modification, and redistribution, is contained in *
-! the files COPYING and Copyright.html. COPYING can be found at the root *
-! of the source code distribution tree; Copyright.html can be found at the *
-! root level of an installed copy of the electronic HDF5 document set and *
-! is linked from the top-level documents page. It can also be found at *
-! http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
-! access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
-! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
-!
- MODULE THDF5
- USE HDF5
- include 'mpif.h'
-! USE MPI
-
-! Dataset dimensions
-
- INTEGER, PARAMETER :: DIM1 = 120, &
- DIM2 = 240
-
- END MODULE THDF5
diff --git a/fortran/testpar/thyperslab_wr.f90 b/fortran/testpar/thyperslab_wr.f90
deleted file mode 100644
index a9f6f06..0000000
--- a/fortran/testpar/thyperslab_wr.f90
+++ /dev/null
@@ -1,253 +0,0 @@
-! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
-! Copyright by the Board of Trustees of the University of Illinois. *
-! All rights reserved. *
-! *
-! This file is part of HDF5. The full HDF5 copyright notice, including *
-! terms governing use, modification, and redistribution, is contained in *
-! the files COPYING and Copyright.html. COPYING can be found at the root *
-! of the source code distribution tree; Copyright.html can be found at the *
-! root level of an installed copy of the electronic HDF5 document set and *
-! is linked from the top-level documents page. It can also be found at *
-! http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
-! access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
-! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
-!
-!
-! This test writes/reads dataset by hyperslabs collectively.
-
- SUBROUTINE dataset_wr_by_hyperslabs(cleanup, total_error)
- USE THDF5
- IMPLICIT NONE
- LOGICAL, INTENT(IN) :: cleanup
- INTEGER, INTENT(OUT) :: total_error
-
- CHARACTER(LEN=8), PARAMETER :: filename = "par_sdsf" ! File name
- CHARACTER(LEN=80) :: fix_filename
- CHARACTER(LEN=8), PARAMETER :: dsetname = "IntArray" ! Dataset name
-
- INTEGER(HID_T) :: file_id ! File identifier
- INTEGER(HID_T) :: dset_id ! Dataset identifier
- INTEGER(HID_T) :: filespace ! Dataspace identifier in file
- INTEGER(HID_T) :: memspace ! Dataspace identifier in memory
- INTEGER(HID_T) :: plac_id ! Property list identifier
- INTEGER(HID_T) :: plxfer_id ! Property list identifier
-
- INTEGER(HSIZE_T), DIMENSION(2) :: dimsf = (/DIM1,DIM2/) ! Dataset dimensions.
-
- INTEGER(HSIZE_T), DIMENSION(2) :: count
- INTEGER(HSIZE_T), DIMENSION(2) :: offset
- INTEGER, ALLOCATABLE :: data (:,:) ! Data to write
- INTEGER, ALLOCATABLE :: data_out (:,:) ! Buffer to store data
- INTEGER :: rank = 2 ! Dataset rank
- INTEGER :: i, j
- INTEGER(HSIZE_T), DIMENSION(2) :: dims
- INTEGER(HID_T) :: driver
-
- INTEGER :: error ! Error flag
- !
- ! MPI definitions and calls.
- !
- INTEGER :: mpierror ! MPI error flag
- INTEGER :: comm, info
- INTEGER :: mpi_size, mpi_rank
- comm = MPI_COMM_WORLD
- info = MPI_INFO_NULL
- CALL MPI_COMM_SIZE(comm, mpi_size, mpierror)
- CALL MPI_COMM_RANK(comm, mpi_rank, mpierror)
- !
- ! Setup file access property list with parallel I/O access.
- !
- CALL h5pcreate_f(H5P_FILE_ACCESS_F, plac_id, error)
- CALL check("h5pcreate_f", error, total_error)
- CALL h5pset_fapl_mpio_f(plac_id, comm, info, error)
- CALL check("h5pset_fapl_mpio_f", error, total_error)
- CALL h5pget_driver_f(plac_id, driver, error)
- CALL check("h5pget_driver_f", error, total_error)
- if( driver .ne. H5FD_MPIO_F) then
- write(*,*) "Wrong driver information returned"
- endif
- CALL h5_fixname_f(filename, fix_filename, plac_id, error)
-
- !
- ! Create the file collectively.
- !
- CALL h5fcreate_f(fix_filename, H5F_ACC_TRUNC_F, file_id, error, access_prp = plac_id)
- CALL check("h5fcreate_f", error, total_error)
- CALL h5pclose_f(plac_id, error)
- CALL check("h5pclose_f", error, total_error)
- !
- ! Create the data space for the dataset.
- !
- CALL h5screate_simple_f(rank, dimsf, filespace, error)
- CALL check("h5screate_simple_f", error, total_error)
-
- !
- ! Create the dataset with default properties.
- !
- CALL h5dcreate_f(file_id, dsetname, H5T_NATIVE_INTEGER, filespace, &
- dset_id, error)
- CALL check("h5dcreate_f", error, total_error)
- CALL h5sclose_f(filespace, error)
- CALL check("h5sclose_f", error, total_error)
- !
- ! Each process defines dataset in memory and writes it to the hyperslab
- ! in the file.
- !
- count(1) = dimsf(1)
- count(2) = dimsf(2)/mpi_size
- offset(1) = 0
- offset(2) = mpi_rank * count(2)
- CALL h5screate_simple_f(rank, count, memspace, error)
- CALL check("h5screate_simple_f", error, total_error)
- !
- ! Select hyperslab in the file.
- !
- CALL h5dget_space_f(dset_id, filespace, error)
- CALL check("h5dget_space_f", error, total_error)
- CALL h5sselect_hyperslab_f (filespace, H5S_SELECT_SET_F, offset, count, error)
- CALL check("h5sselect_hyperslab_f", error, total_error)
- !
- ! Initialize data buffer with trivial data.
- !
- ALLOCATE ( data(count(1),count(2)))
- dims(1) = count(1)
- dims(2) = count(2)
- data = mpi_rank + 10
- !
- ! Create property list for collective dataset write
- !
- CALL h5pcreate_f(H5P_DATASET_XFER_F, plxfer_id, error)
- CALL check("h5pcreate_f", error, total_error)
- CALL h5pset_dxpl_mpio_f(plxfer_id, H5FD_MPIO_COLLECTIVE_F, error)
- CALL check("h5pset_dxpl_mpio_f", error, total_error)
-
- !
- ! Write the dataset collectively.
- !
- CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, data, dims, error, &
- file_space_id = filespace, mem_space_id = memspace, xfer_prp = plxfer_id)
- CALL check("h5dwrite_f", error, total_error)
- !
- ! Deallocate data buffer.
- !
- DEALLOCATE(data)
-
- !
- ! Close dataspaces.
- !
- CALL h5sclose_f(filespace, error)
- CALL check("h5sclose_f", error, total_error)
- CALL h5sclose_f(memspace, error)
- CALL check("h5sclose_f", error, total_error)
-
- !
- ! Close the dataset.
- !
- CALL h5dclose_f(dset_id, error)
- CALL check("h5dclose_f", error, total_error)
-
- CALL h5pclose_f(plxfer_id, error)
- CALL check("h5pclose_f", error, total_error)
-
- !
- ! Close the file.
- !
- CALL h5fclose_f(file_id, error)
- CALL check("h5fclose_f", error, total_error)
- !
- ! Reopen the file with || access.
- !
- CALL h5pcreate_f(H5P_FILE_ACCESS_F, plac_id, error)
- CALL check("h5pcreate_f", error, total_error)
- CALL h5pset_fapl_mpio_f(plac_id, comm, info, error)
- CALL check("h5pset_fapl_mpio_f", error, total_error)
- CALL h5fopen_f(fix_filename, H5F_ACC_RDWR_F, file_id, error, plac_id)
- CALL check("h5fopen_f", error, total_error)
- !
- ! Open dataset.
- !
- CALL h5dopen_f(file_id, dsetname, dset_id, error)
- CALL check("h5dopen_f", error, total_error)
-
- !
- ! Each process defines dataset in memory and reads hyperslab
- ! from the file.
- !
- count(1) = dimsf(1)
- count(2) = dimsf(2)/mpi_size
- offset(1) = 0
- offset(2) = mpi_rank * count(2)
- CALL h5screate_simple_f(rank, count, memspace, error)
- CALL check("h5screate_simple_f", error, total_error)
- !
- ! Select hyperslab in the file.
- !
- CALL h5dget_space_f(dset_id, filespace, error)
- CALL check("h5dget_space_f", error, total_error)
- CALL h5sselect_hyperslab_f (filespace, H5S_SELECT_SET_F, offset, count, error)
- CALL check("h5sselect_hyperslab_f", error, total_error)
- !
- ! Allocate data buffer.
- !
- ALLOCATE ( data(count(1),count(2)))
- ALLOCATE ( data_out(count(1),count(2)))
- data = mpi_rank + 10
- !
- ! Create property list for collective dataset write
- !
- CALL h5pcreate_f(H5P_DATASET_XFER_F, plxfer_id, error)
- CALL check("h5pcreate_f", error, total_error)
- CALL h5pset_dxpl_mpio_f(plxfer_id, H5FD_MPIO_COLLECTIVE_F, error)
- CALL check("h5pset_dxpl_mpio_f", error, total_error)
-
- !
- ! Write the dataset collectively.
- !
- CALL h5dread_f(dset_id, H5T_NATIVE_INTEGER, data_out, dims, error, &
- file_space_id = filespace, mem_space_id = memspace, xfer_prp = plxfer_id)
- CALL check("h5dread_f", error, total_error)
- do j = 1, count(2)
- do i = 1, count(1)
- if( data(i,j) .ne. data_out(i,j)) then
- total_error = total_error + 1
- goto 100
- endif
- enddo
- enddo
- 100 continue
- !
- ! Deallocate data buffer.
- !
- DEALLOCATE(data)
- DEALLOCATE(data_out)
- !
- ! Close dataspaces.
- !
- CALL h5sclose_f(filespace, error)
- CALL check("h5sclose_f", error, total_error)
- CALL h5sclose_f(memspace, error)
- CALL check("h5sclose_f", error, total_error)
- !
- ! Close property list.
- !
- CALL h5pclose_f(plxfer_id, error)
- CALL check("h5pclose_f", error, total_error)
- !
- ! Close dataset.
- !
- CALL h5dclose_f(dset_id, error)
- CALL check("h5dclose_f", error, total_error)
- !
- ! Close the file.
- !
- CALL h5fclose_f(file_id, error)
- CALL check("h5fclose_f", error, total_error)
-
- if(cleanup) CALL h5_cleanup_f(filename, plac_id, error)
- CALL check("h5_cleanup_f", error, total_error)
-
- CALL h5pclose_f(plac_id, error)
- CALL check("h5pclose_f", error, total_error)
-
- RETURN
- END SUBROUTINE dataset_wr_by_hyperslabs