diff options
| -rw-r--r-- | java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java | 6 | ||||
| -rw-r--r-- | testpar/CMakeLists.txt | 2 | ||||
| -rw-r--r-- | testpar/CMakeTests.cmake | 3 | ||||
| -rw-r--r-- | tools/test/perform/iopipe.c | 14 | ||||
| -rw-r--r-- | tools/test/perform/overhead.c | 6 | ||||
| -rw-r--r-- | tools/test/perform/perf_meta.c | 28 | ||||
| -rw-r--r-- | tools/test/perform/pio_engine.c | 90 | ||||
| -rw-r--r-- | tools/test/perform/pio_perf.c | 320 | ||||
| -rw-r--r-- | tools/test/perform/pio_standalone.h | 2 | ||||
| -rw-r--r-- | tools/test/perform/sio_engine.c | 46 | ||||
| -rw-r--r-- | tools/test/perform/sio_perf.c | 234 | ||||
| -rw-r--r-- | tools/test/perform/sio_standalone.h | 2 |
12 files changed, 380 insertions, 373 deletions
diff --git a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java index f56a038..c13473c 100644 --- a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java +++ b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java @@ -17,7 +17,7 @@ package hdf.hdf5lib.structs; import java.io.Serializable; /* - * Java representation of the HDFS VFD file access property list (fapl) + * Java representation of the HDFS VFD file access property list (fapl) * structure. * * Used for the access of files hosted on the Hadoop Distributed File System. @@ -33,7 +33,7 @@ public class H5FD_hdfs_fapl_t implements Serializable { private int namenode_port; private int stream_buffer_size; - /** + /* * Create a fapl_t structure with the specified components. */ public H5FD_hdfs_fapl_t( @@ -91,7 +91,7 @@ public class H5FD_hdfs_fapl_t implements Serializable { public String toString() { return "H5FD_hdfs_fapl_t (Version: " + this.version + ") {" + "\n namenode_name: '" + this.namenode_name + - "'\n namenode_port: " + this.namenode_port + + "'\n namenode_port: " + this.namenode_port + "\n user_name: '" + this.user_name + "'\n kerberos_ticket_cache: '" + this.kerberos_ticket_cache + "'\n stream_buffer_size: " + this.stream_buffer_size + diff --git a/testpar/CMakeLists.txt b/testpar/CMakeLists.txt index 1aecef6..47a0e15 100644 --- a/testpar/CMakeLists.txt +++ b/testpar/CMakeLists.txt @@ -61,7 +61,7 @@ set (H5P_TESTS t_mpi t_bigio t_cache - #t_cache_image + t_cache_image t_pflush1 t_pflush2 t_pread diff --git a/testpar/CMakeTests.cmake b/testpar/CMakeTests.cmake index ad244b5..5848c60 100644 --- a/testpar/CMakeTests.cmake +++ b/testpar/CMakeTests.cmake @@ -72,6 +72,9 @@ endforeach () # list (REMOVE_ITEM H5P_TESTS t_shapesame) #endif () +# do not test until new version is added +list (REMOVE_ITEM H5P_TESTS t_cache_image) + set (test_par_CLEANFILES t_cache_image_00.h5 t_cache_image_01.h5 diff --git a/tools/test/perform/iopipe.c b/tools/test/perform/iopipe.c index eac099b..2d9c44f 100644 --- a/tools/test/perform/iopipe.c +++ b/tools/test/perform/iopipe.c @@ -224,7 +224,7 @@ main (void) _ftime(tbstart); #endif #endif - fprintf (stderr, HEADING, "fill raw"); + HDfprintf (stderr, HEADING, "fill raw"); for(u = 0; u < nwrite; u++) { putc (PROGRESS, stderr); HDfflush(stderr); @@ -262,7 +262,7 @@ main (void) _ftime(tbstart); #endif #endif - fprintf (stderr, HEADING, "fill hdf5"); + HDfprintf (stderr, HEADING, "fill hdf5"); for(u = 0; u < nread; u++) { putc (PROGRESS, stderr); HDfflush(stderr); @@ -301,7 +301,7 @@ main (void) _ftime(tbstart); #endif #endif - fprintf (stderr, HEADING, "out raw"); + HDfprintf (stderr, HEADING, "out raw"); for(u = 0; u < nwrite; u++) { putc (PROGRESS, stderr); HDfflush(stderr); @@ -341,7 +341,7 @@ main (void) _ftime(tbstart); #endif #endif - fprintf (stderr, HEADING, "out hdf5"); + HDfprintf (stderr, HEADING, "out hdf5"); for(u = 0; u < nwrite; u++) { putc (PROGRESS, stderr); HDfflush(stderr); @@ -380,7 +380,7 @@ main (void) _ftime(tbstart); #endif #endif - fprintf (stderr, HEADING, "in raw"); + HDfprintf (stderr, HEADING, "in raw"); for(u = 0; u < nread; u++) { putc (PROGRESS, stderr); HDfflush(stderr); @@ -421,7 +421,7 @@ main (void) _ftime(tbstart); #endif #endif - fprintf (stderr, HEADING, "in hdf5"); + HDfprintf (stderr, HEADING, "in hdf5"); for(u = 0; u < nread; u++) { putc (PROGRESS, stderr); HDfflush(stderr); @@ -465,7 +465,7 @@ main (void) _ftime(tbstart); #endif #endif - fprintf (stderr, HEADING, "in hdf5 partial"); + HDfprintf (stderr, HEADING, "in hdf5 partial"); for(u = 0; u < nread; u++) { putc (PROGRESS, stderr); HDfflush(stderr); diff --git a/tools/test/perform/overhead.c b/tools/test/perform/overhead.c index 81f9de6..108d9e4 100644 --- a/tools/test/perform/overhead.c +++ b/tools/test/perform/overhead.c @@ -84,9 +84,9 @@ typedef enum fill_t { static void usage(const char *prog) { - fprintf(stderr, "usage: %s [STYLE|cache] [LEFT [MIDDLE [RIGHT]]]\n", + HDfprintf(stderr, "usage: %s [STYLE|cache] [LEFT [MIDDLE [RIGHT]]]\n", prog); - fprintf(stderr, "\ + HDfprintf(stderr, "\ STYLE is the order that the dataset is filled and should be one of:\n\ forward -- Fill the dataset from lowest address to highest\n\ address. This style tests the right split ratio.\n\ @@ -401,6 +401,6 @@ main(int argc, char *argv[]) return 0; error: - fprintf(stderr, "*** ERRORS DETECTED ***\n"); + HDfprintf(stderr, "*** ERRORS DETECTED ***\n"); return 1; } diff --git a/tools/test/perform/perf_meta.c b/tools/test/perform/perf_meta.c index c24e598..b56f074 100644 --- a/tools/test/perform/perf_meta.c +++ b/tools/test/perform/perf_meta.c @@ -313,7 +313,7 @@ create_dsets(hid_t file) * Create a dataset using the default dataset creation properties. */ for(i = 0; i < NUM_DSETS; i++) { - sprintf(dset_name, "dataset %d", i); + HDsprintf(dset_name, "dataset %d", i); if((dataset = H5Dcreate2(file, dset_name, H5T_NATIVE_DOUBLE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto error; @@ -378,14 +378,14 @@ create_attrs_1(void) * Create all(user specifies the number) attributes for each dataset */ for(i = 0; i < NUM_DSETS; i++) { - sprintf(dset_name, "dataset %d", i); + HDsprintf(dset_name, "dataset %d", i); open_t.start = retrieve_time(); if((dataset = H5Dopen2(file, dset_name, H5P_DEFAULT)) < 0) goto error; perf(&open_t, open_t.start, retrieve_time()); for(j = 0; j < NUM_ATTRS; j++) { - sprintf(attr_name, "all attrs for each dset %d", j); + HDsprintf(attr_name, "all attrs for each dset %d", j); attr_t.start = retrieve_time(); if((attr = H5Acreate2(dataset, attr_name, H5T_NATIVE_DOUBLE, small_space, H5P_DEFAULT, H5P_DEFAULT)) < 0) @@ -422,7 +422,7 @@ create_attrs_1(void) attr_t.avg = attr_t.total / (NUM_ATTRS*NUM_DSETS); /* Print out the performance result */ - fprintf(stderr, "1. Create %d attributes for each of %d existing datasets\n", + HDfprintf(stderr, "1. Create %d attributes for each of %d existing datasets\n", NUM_ATTRS, NUM_DSETS); print_perf(open_t, close_t, attr_t); } @@ -480,7 +480,7 @@ create_attrs_2(void) * Create all(user specifies the number) attributes for each new dataset */ for(i = 0; i < NUM_DSETS; i++) { - sprintf(dset_name, "dataset %d", i); + HDsprintf(dset_name, "dataset %d", i); create_t.start = retrieve_time(); if((dataset = H5Dcreate2(file, dset_name, H5T_NATIVE_DOUBLE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) @@ -488,7 +488,7 @@ create_attrs_2(void) perf(&create_t, create_t.start, retrieve_time()); for(j = 0; j < NUM_ATTRS; j++) { - sprintf(attr_name, "all attrs for each dset %d", j); + HDsprintf(attr_name, "all attrs for each dset %d", j); attr_t.start = retrieve_time(); if((attr = H5Acreate2(dataset, attr_name, H5T_NATIVE_DOUBLE, small_space, H5P_DEFAULT, H5P_DEFAULT)) < 0) @@ -525,7 +525,7 @@ create_attrs_2(void) attr_t.avg = attr_t.total / (NUM_ATTRS*NUM_DSETS); /* Print out the performance result */ - fprintf(stderr, "2. Create %d attributes for each of %d new datasets\n", + HDfprintf(stderr, "2. Create %d attributes for each of %d new datasets\n", NUM_ATTRS, NUM_DSETS); print_perf(create_t, close_t, attr_t); } @@ -593,14 +593,14 @@ create_attrs_3(void) for(i = 0; i < loop_num; i++) { for(j = 0; j < NUM_DSETS; j++) { - sprintf(dset_name, "dataset %d", j); + HDsprintf(dset_name, "dataset %d", j); open_t.start = retrieve_time(); if((dataset = H5Dopen2(file, dset_name, H5P_DEFAULT)) < 0) goto error; perf(&open_t, open_t.start, retrieve_time()); for(k = 0; k < BATCH_ATTRS; k++) { - sprintf(attr_name, "some attrs for each dset %d %d", i, k); + HDsprintf(attr_name, "some attrs for each dset %d %d", i, k); attr_t.start = retrieve_time(); if((attr = H5Acreate2(dataset, attr_name, H5T_NATIVE_DOUBLE, small_space, H5P_DEFAULT, H5P_DEFAULT)) < 0) @@ -637,7 +637,7 @@ create_attrs_3(void) attr_t.avg = attr_t.total / (NUM_ATTRS*NUM_DSETS); /* Print out the performance result */ - fprintf(stderr, "3. Create %d attributes for each of %d existing datasets for %d times\n", + HDfprintf(stderr, "3. Create %d attributes for each of %d existing datasets for %d times\n", BATCH_ATTRS, NUM_DSETS, loop_num); print_perf(open_t, close_t, attr_t); } @@ -750,12 +750,12 @@ void perf(p_time *perf_t, double start_t, double end_t) */ void print_perf(p_time open_t, p_time close_t, p_time attr_t) { - fprintf(stderr, "\t%s:\t\tavg=%.6fs;\tmax=%.6fs;\tmin=%.6fs\n", + HDfprintf(stderr, "\t%s:\t\tavg=%.6fs;\tmax=%.6fs;\tmin=%.6fs\n", open_t.func, open_t.avg, open_t.max, open_t.min); - fprintf(stderr, "\tH5Dclose:\t\tavg=%.6fs;\tmax=%.6fs;\tmin=%.6fs\n", + HDfprintf(stderr, "\tH5Dclose:\t\tavg=%.6fs;\tmax=%.6fs;\tmin=%.6fs\n", close_t.avg, close_t.max, close_t.min); if(NUM_ATTRS) - fprintf(stderr, "\tH5A(create & close):\tavg=%.6fs;\tmax=%.6fs;\tmin=%.6fs\n", + HDfprintf(stderr, "\tH5A(create & close):\tavg=%.6fs;\tmax=%.6fs;\tmin=%.6fs\n", attr_t.avg, attr_t.max, attr_t.min); } @@ -799,7 +799,7 @@ main(int argc, char **argv) #ifdef H5_HAVE_PARALLEL if (facc_type == FACC_DEFAULT || (facc_type != FACC_DEFAULT && MAINPROCESS)) #endif /*H5_HAVE_PARALLEL*/ - fprintf(stderr, "\t\tPerformance result of metadata for datasets and attributes\n\n"); + HDfprintf(stderr, "\t\tPerformance result of metadata for datasets and attributes\n\n"); fapl = H5Pcreate (H5P_FILE_ACCESS); #ifdef H5_HAVE_PARALLEL diff --git a/tools/test/perform/pio_engine.c b/tools/test/perform/pio_engine.c index d47cd43..798e32e 100644 --- a/tools/test/perform/pio_engine.c +++ b/tools/test/perform/pio_engine.c @@ -61,14 +61,14 @@ #define GOTOERROR(errcode) { ret_code = errcode; goto done; } #define GOTODONE { goto done; } #define ERRMSG(mesg) { \ - fprintf(stderr, "Proc %d: ", pio_mpi_rank_g); \ - fprintf(stderr, "*** Assertion failed (%s) at line %4d in %s\n", \ + HDfprintf(stderr, "Proc %d: ", pio_mpi_rank_g); \ + HDfprintf(stderr, "*** Assertion failed (%s) at line %4d in %s\n", \ mesg, (int)__LINE__, __FILE__); \ } #define MSG(mesg) { \ - fprintf(stderr, "Proc %d: ", pio_mpi_rank_g); \ - fprintf(stderr, "(%s) at line %4d in %s\n", \ + HDfprintf(stderr, "Proc %d: ", pio_mpi_rank_g); \ + HDfprintf(stderr, "(%s) at line %4d in %s\n", \ mesg, (int)__LINE__, __FILE__); \ } @@ -194,7 +194,7 @@ do_pio(parameters param) break; default: /* unknown request */ - fprintf(stderr, "Unknown IO type request (%d)\n", iot); + HDfprintf(stderr, "Unknown IO type request (%d)\n", iot); GOTOERROR(FAIL); } @@ -213,21 +213,21 @@ do_pio(parameters param) } if (param.num_files < 0 ) { - fprintf(stderr, + HDfprintf(stderr, "number of files must be >= 0 (%ld)\n", param.num_files); GOTOERROR(FAIL); } if (ndsets < 0 ) { - fprintf(stderr, + HDfprintf(stderr, "number of datasets per file must be >= 0 (%ld)\n", ndsets); GOTOERROR(FAIL); } if (param.num_procs <= 0 ) { - fprintf(stderr, + HDfprintf(stderr, "maximum number of process to use must be > 0 (%d)\n", param.num_procs); GOTOERROR(FAIL); @@ -292,7 +292,7 @@ do_pio(parameters param) /* output all of the times for all iterations */ if (myrank == 0) - fprintf(output, "Timer details:\n"); + HDfprintf(output, "Timer details:\n"); } for (nf = 1; nf <= param.num_files; nf++) { @@ -302,7 +302,7 @@ do_pio(parameters param) /* Open file for write */ char base_name[256]; - sprintf(base_name, "#pio_tmp_%lu", nf); + HDsprintf(base_name, "#pio_tmp_%lu", nf); pio_create_filename(iot, base_name, fname, sizeof(fname)); if (pio_debug_level > 0) HDfprintf(output, "rank %d: data filename=%s\n", @@ -385,7 +385,7 @@ done: /* release generic resources */ if(buffer) - free(buffer); + HDfree(buffer); res.ret_code = ret_code; return res; } @@ -620,7 +620,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, /* Prepare buffer for verifying data */ if (parms->verify) - memset(buffer,pio_mpi_rank_g+1,buf_size*blk_size); + HDmemset(buffer,pio_mpi_rank_g+1,buf_size*blk_size); } /* end else */ @@ -853,7 +853,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, /* Create the dataset transfer property list */ h5dxpl = H5Pcreate(H5P_DATASET_XFER); if (h5dxpl < 0) { - fprintf(stderr, "HDF5 Property List Create failed\n"); + HDfprintf(stderr, "HDF5 Property List Create failed\n"); GOTOERROR(FAIL); } @@ -861,7 +861,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, if(parms->collective) { hrc = H5Pset_dxpl_mpio(h5dxpl, H5FD_MPIO_COLLECTIVE); if (hrc < 0) { - fprintf(stderr, "HDF5 Property List Set failed\n"); + HDfprintf(stderr, "HDF5 Property List Set failed\n"); GOTOERROR(FAIL); } /* end if */ } /* end if */ @@ -883,7 +883,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, case PHDF5: h5dcpl = H5Pcreate(H5P_DATASET_CREATE); if (h5dcpl < 0) { - fprintf(stderr, "HDF5 Property List Create failed\n"); + HDfprintf(stderr, "HDF5 Property List Create failed\n"); GOTOERROR(FAIL); } /* 1D dataspace */ @@ -894,7 +894,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, h5dims[0] = blk_size; hrc = H5Pset_chunk(h5dcpl, 1, h5dims); if (hrc < 0) { - fprintf(stderr, "HDF5 Property List Set failed\n"); + HDfprintf(stderr, "HDF5 Property List Set failed\n"); GOTOERROR(FAIL); } /* end if */ } /* end if */ @@ -907,25 +907,25 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, h5dims[1] = blk_size; hrc = H5Pset_chunk(h5dcpl, 2, h5dims); if (hrc < 0) { - fprintf(stderr, "HDF5 Property List Set failed\n"); + HDfprintf(stderr, "HDF5 Property List Set failed\n"); GOTOERROR(FAIL); } /* end if */ } /* end if */ }/* end else */ - sprintf(dname, "Dataset_%ld", ndset); + HDsprintf(dname, "Dataset_%ld", ndset); h5ds_id = H5DCREATE(fd->h5fd, dname, ELMT_H5_TYPE, h5dset_space_id, h5dcpl); if (h5ds_id < 0) { - fprintf(stderr, "HDF5 Dataset Create failed\n"); + HDfprintf(stderr, "HDF5 Dataset Create failed\n"); GOTOERROR(FAIL); } hrc = H5Pclose(h5dcpl); /* verifying the close of the dcpl */ if (hrc < 0) { - fprintf(stderr, "HDF5 Property List Close failed\n"); + HDfprintf(stderr, "HDF5 Property List Close failed\n"); GOTOERROR(FAIL); } break; @@ -1398,7 +1398,7 @@ do_write(results *res, file_descr *fd, parameters *parms, long ndsets, hrc = H5Dclose(h5ds_id); if (hrc < 0) { - fprintf(stderr, "HDF5 Dataset Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Close failed\n"); GOTOERROR(FAIL); } @@ -1455,7 +1455,7 @@ done: if (h5dset_space_id != -1) { hrc = H5Sclose(h5dset_space_id); if (hrc < 0){ - fprintf(stderr, "HDF5 Dataset Space Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Space Close failed\n"); ret_code = FAIL; } else { h5dset_space_id = -1; @@ -1465,7 +1465,7 @@ done: if (h5mem_space_id != -1) { hrc = H5Sclose(h5mem_space_id); if (hrc < 0) { - fprintf(stderr, "HDF5 Memory Space Close failed\n"); + HDfprintf(stderr, "HDF5 Memory Space Close failed\n"); ret_code = FAIL; } else { h5mem_space_id = -1; @@ -1475,7 +1475,7 @@ done: if (h5dxpl != -1) { hrc = H5Pclose(h5dxpl); if (hrc < 0) { - fprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); ret_code = FAIL; } else { h5dxpl = -1; @@ -1824,7 +1824,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, /* Create the dataset transfer property list */ h5dxpl = H5Pcreate(H5P_DATASET_XFER); if (h5dxpl < 0) { - fprintf(stderr, "HDF5 Property List Create failed\n"); + HDfprintf(stderr, "HDF5 Property List Create failed\n"); GOTOERROR(FAIL); } @@ -1832,7 +1832,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, if(parms->collective) { hrc = H5Pset_dxpl_mpio(h5dxpl, H5FD_MPIO_COLLECTIVE); if (hrc < 0) { - fprintf(stderr, "HDF5 Property List Set failed\n"); + HDfprintf(stderr, "HDF5 Property List Set failed\n"); GOTOERROR(FAIL); } /* end if */ } /* end if */ @@ -1852,10 +1852,10 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, break; case PHDF5: - sprintf(dname, "Dataset_%ld", ndset); + HDsprintf(dname, "Dataset_%ld", ndset); h5ds_id = H5DOPEN(fd->h5fd, dname); if (h5ds_id < 0) { - fprintf(stderr, "HDF5 Dataset open failed\n"); + HDfprintf(stderr, "HDF5 Dataset open failed\n"); GOTOERROR(FAIL); } @@ -2353,7 +2353,7 @@ do_read(results *res, file_descr *fd, parameters *parms, long ndsets, hrc = H5Dclose(h5ds_id); if (hrc < 0) { - fprintf(stderr, "HDF5 Dataset Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Close failed\n"); GOTOERROR(FAIL); } @@ -2410,7 +2410,7 @@ done: if (h5dset_space_id != -1) { hrc = H5Sclose(h5dset_space_id); if (hrc < 0){ - fprintf(stderr, "HDF5 Dataset Space Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Space Close failed\n"); ret_code = FAIL; } else { h5dset_space_id = -1; @@ -2420,7 +2420,7 @@ done: if (h5mem_space_id != -1) { hrc = H5Sclose(h5mem_space_id); if (hrc < 0) { - fprintf(stderr, "HDF5 Memory Space Close failed\n"); + HDfprintf(stderr, "HDF5 Memory Space Close failed\n"); ret_code = FAIL; } else { h5mem_space_id = -1; @@ -2430,7 +2430,7 @@ done: if (h5dxpl != -1) { hrc = H5Pclose(h5dxpl); if (hrc < 0) { - fprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); ret_code = FAIL; } else { h5dxpl = -1; @@ -2461,7 +2461,7 @@ do_fopen(parameters *param, char *fname, file_descr *fd /*out*/, int flags) fd->posixfd = POSIXOPEN(fname, O_RDONLY); if (fd->posixfd < 0 ) { - fprintf(stderr, "POSIX File Open failed(%s)\n", fname); + HDfprintf(stderr, "POSIX File Open failed(%s)\n", fname); GOTOERROR(FAIL); } @@ -2485,7 +2485,7 @@ do_fopen(parameters *param, char *fname, file_descr *fd /*out*/, int flags) h5_io_info_g, &fd->mpifd); if (mrc != MPI_SUCCESS) { - fprintf(stderr, "MPI File Open failed(%s)\n", fname); + HDfprintf(stderr, "MPI File Open failed(%s)\n", fname); GOTOERROR(FAIL); } @@ -2493,13 +2493,13 @@ do_fopen(parameters *param, char *fname, file_descr *fd /*out*/, int flags) /*filesize , set size to 0 explicitedly. */ mrc = MPI_File_set_size(fd->mpifd, (MPI_Offset)0); if (mrc != MPI_SUCCESS) { - fprintf(stderr, "MPI_File_set_size failed\n"); + HDfprintf(stderr, "MPI_File_set_size failed\n"); GOTOERROR(FAIL); } } else { mrc = MPI_File_open(pio_comm_g, fname, MPI_MODE_RDONLY, h5_io_info_g, &fd->mpifd); if (mrc != MPI_SUCCESS) { - fprintf(stderr, "MPI File Open failed(%s)\n", fname); + HDfprintf(stderr, "MPI File Open failed(%s)\n", fname); GOTOERROR(FAIL); } } @@ -2508,19 +2508,19 @@ do_fopen(parameters *param, char *fname, file_descr *fd /*out*/, int flags) case PHDF5: if ((acc_tpl = H5Pcreate(H5P_FILE_ACCESS)) < 0) { - fprintf(stderr, "HDF5 Property List Create failed\n"); + HDfprintf(stderr, "HDF5 Property List Create failed\n"); GOTOERROR(FAIL); } /* Set the file driver to the MPI-IO driver */ if (H5Pset_fapl_mpio(acc_tpl, pio_comm_g, h5_io_info_g) < 0) { - fprintf(stderr, "HDF5 Property List Set failed\n"); + HDfprintf(stderr, "HDF5 Property List Set failed\n"); GOTOERROR(FAIL); } /* Set the alignment of objects in HDF5 file */ if (H5Pset_alignment(acc_tpl, param->h5_thresh, param->h5_align) < 0) { - fprintf(stderr, "HDF5 Property List Set failed\n"); + HDfprintf(stderr, "HDF5 Property List Set failed\n"); GOTOERROR(FAIL); } @@ -2530,13 +2530,13 @@ do_fopen(parameters *param, char *fname, file_descr *fd /*out*/, int flags) else fd->h5fd = H5Fopen(fname, H5F_ACC_RDONLY, acc_tpl); if (fd->h5fd < 0) { - fprintf(stderr, "HDF5 File Create failed(%s)\n", fname); + HDfprintf(stderr, "HDF5 File Create failed(%s)\n", fname); GOTOERROR(FAIL); } /* verifying the close of the acc_tpl */ if (H5Pclose(acc_tpl) < 0) { - fprintf(stderr, "HDF5 Property List Close failed\n"); + HDfprintf(stderr, "HDF5 Property List Close failed\n"); GOTOERROR(FAIL); } @@ -2565,7 +2565,7 @@ do_fclose(iotype iot, file_descr *fd /*out*/) rc = POSIXCLOSE(fd->posixfd); if (rc != 0){ - fprintf(stderr, "POSIX File Close failed\n"); + HDfprintf(stderr, "POSIX File Close failed\n"); GOTOERROR(FAIL); } @@ -2576,7 +2576,7 @@ do_fclose(iotype iot, file_descr *fd /*out*/) mrc = MPI_File_close(&fd->mpifd); if (mrc != MPI_SUCCESS){ - fprintf(stderr, "MPI File close failed\n"); + HDfprintf(stderr, "MPI File close failed\n"); GOTOERROR(FAIL); } @@ -2587,7 +2587,7 @@ do_fclose(iotype iot, file_descr *fd /*out*/) hrc = H5Fclose(fd->h5fd); if (hrc < 0) { - fprintf(stderr, "HDF5 File Close failed\n"); + HDfprintf(stderr, "HDF5 File Close failed\n"); GOTOERROR(FAIL); } @@ -2621,7 +2621,7 @@ do_cleanupfile(iotype iot, char *fname) if (clean_file_g){ switch (iot){ case POSIXIO: - remove(fname); + HDremove(fname); break; case MPIO: case PHDF5: diff --git a/tools/test/perform/pio_perf.c b/tools/test/perform/pio_perf.c index 597629e..93741c4 100644 --- a/tools/test/perform/pio_perf.c +++ b/tools/test/perform/pio_perf.c @@ -277,13 +277,13 @@ struct options { unsigned interleaved; /* Interleaved vs. contiguous blocks */ unsigned collective; /* Collective vs. independent I/O */ unsigned dim2d; /* 1D vs. 2D geometry */ - int print_times; /* print times as well as throughputs */ - int print_raw; /* print raw data throughput info */ + int print_times; /* print times as well as throughputs */ + int print_raw; /* print raw data throughput info */ off_t h5_alignment; /* alignment in HDF5 file */ off_t h5_threshold; /* threshold for alignment in HDF5 file */ - int h5_use_chunks; /* Make HDF5 dataset chunked */ - int h5_write_only; /* Perform the write tests only */ - int verify; /* Verify data correctness */ + int h5_use_chunks; /* Make HDF5 dataset chunked */ + int h5_write_only; /* Perform the write tests only */ + int verify; /* Verify data correctness */ }; typedef struct _minmax { @@ -339,12 +339,12 @@ main(int argc, char **argv) ret = MPI_Comm_size(MPI_COMM_WORLD, &comm_world_nprocs_g); if (ret != MPI_SUCCESS) { - fprintf(stderr, "%s: MPI_Comm_size call failed\n", progname); + HDfprintf(stderr, "%s: MPI_Comm_size call failed\n", progname); if (ret == MPI_ERR_COMM) - fprintf(stderr, "invalid MPI communicator\n"); + HDfprintf(stderr, "invalid MPI communicator\n"); else - fprintf(stderr, "invalid argument\n"); + HDfprintf(stderr, "invalid argument\n"); exit_value = EXIT_FAILURE; goto finish; @@ -353,12 +353,12 @@ main(int argc, char **argv) ret = MPI_Comm_rank(MPI_COMM_WORLD, &comm_world_rank_g); if (ret != MPI_SUCCESS) { - fprintf(stderr, "%s: MPI_Comm_rank call failed\n", progname); + HDfprintf(stderr, "%s: MPI_Comm_rank call failed\n", progname); if (ret == MPI_ERR_COMM) - fprintf(stderr, "invalid MPI communicator\n"); + HDfprintf(stderr, "invalid MPI communicator\n"); else - fprintf(stderr, "invalid argument\n"); + HDfprintf(stderr, "invalid argument\n"); exit_value = EXIT_FAILURE; goto finish; @@ -376,7 +376,7 @@ main(int argc, char **argv) if (opts->output_file) { if ((output = HDfopen(opts->output_file, "w")) == NULL) { - fprintf(stderr, "%s: cannot open output file\n", progname); + HDfprintf(stderr, "%s: cannot open output file\n", progname); perror(opts->output_file); goto finish; } @@ -667,7 +667,7 @@ run_test(iotype iot, parameters parms, struct options *opts) /* * Show various statistics */ - /* Write statistics */ + /* Write statistics */ /* Print the raw data throughput if desired */ if (opts->print_raw) { /* accumulate and output the max, min, and average "raw write" times */ @@ -733,7 +733,7 @@ run_test(iotype iot, parameters parms, struct options *opts) } if (!parms.h5_write_only) { - /* Read statistics */ + /* Read statistics */ /* Print the raw data throughput if desired */ if (opts->print_raw) { /* accumulate and output the max, min, and average "raw read" times */ @@ -925,7 +925,7 @@ create_comm_world(int num_procs, int *doing_pio) MPI_Comm_size(MPI_COMM_WORLD, &nprocs); if (num_procs > nprocs) { - fprintf(stderr, + HDfprintf(stderr, "number of process(%d) must be <= number of processes in MPI_COMM_WORLD(%d)\n", num_procs, nprocs); goto error_done; @@ -936,7 +936,7 @@ create_comm_world(int num_procs, int *doing_pio) mrc = MPI_Comm_split(MPI_COMM_WORLD, color, myrank, &pio_comm_g); if (mrc != MPI_SUCCESS) { - fprintf(stderr, "MPI_Comm_split failed\n"); + HDfprintf(stderr, "MPI_Comm_split failed\n"); goto error_done; } @@ -1065,9 +1065,9 @@ output_report(const char *fmt, ...) if (myrank == 0) { va_list ap; - va_start(ap, fmt); - vfprintf(output, fmt, ap); - va_end(ap); + HDva_start(ap, fmt); + HDvfprintf(output, fmt, ap); + HDva_end(ap); } } @@ -1087,10 +1087,10 @@ print_indent(register int indent) MPI_Comm_rank(pio_comm_g, &myrank); if (myrank == 0) { - indent *= TAB_SPACE; + indent *= TAB_SPACE; - for (; indent > 0; --indent) - fputc(' ', output); + for (; indent > 0; --indent) + HDfputc(' ', output); } } @@ -1115,11 +1115,11 @@ static void print_io_api(long io_types) { if (io_types & PIO_POSIX) - HDfprintf(output, "posix "); + HDfprintf(output, "posix "); if (io_types & PIO_MPI) - HDfprintf(output, "mpiio "); + HDfprintf(output, "mpiio "); if (io_types & PIO_HDF5) - HDfprintf(output, "phdf5 "); + HDfprintf(output, "phdf5 "); HDfprintf(output, "\n"); } @@ -1128,7 +1128,7 @@ report_parameters(struct options *opts) { int rank = comm_world_rank_g; - print_version("HDF5 Library"); /* print library version */ + print_version("HDF5 Library"); /* print library version */ HDfprintf(output, "rank %d: ==== Parameters ====\n", rank); HDfprintf(output, "rank %d: IO API=", rank); @@ -1303,9 +1303,9 @@ parse_command_line(int argc, char *argv[]) } else if (!HDstrcasecmp(buf, "posix")) { cl_opts->io_types |= PIO_POSIX; } else { - fprintf(stderr, "pio_perf: invalid --api option %s\n", + HDfprintf(stderr, "pio_perf: invalid --api option %s\n", buf); - exit(EXIT_FAILURE); + HDexit(EXIT_FAILURE); } if (*end == '\0') @@ -1345,17 +1345,17 @@ parse_command_line(int argc, char *argv[]) HDmemset(buf, '\0', sizeof(buf)); for (i = 0; *end != '\0' && *end != ','; ++end) - if (isalnum(*end) && i < 10) + if (HDisalnum(*end) && i < 10) buf[i++] = *end; - if (strlen(buf) > 1 || isdigit(buf[0])) { + if (HDstrlen(buf) > 1 || HDisdigit(buf[0])) { size_t j; for (j = 0; j < 10 && buf[j] != '\0'; ++j) if (!isdigit(buf[j])) { - fprintf(stderr, "pio_perf: invalid --debug option %s\n", + HDfprintf(stderr, "pio_perf: invalid --debug option %s\n", buf); - exit(EXIT_FAILURE); + HDexit(EXIT_FAILURE); } pio_debug_level = atoi(buf); @@ -1379,8 +1379,8 @@ parse_command_line(int argc, char *argv[]) cl_opts->verify = TRUE; break; default: - fprintf(stderr, "pio_perf: invalid --debug option %s\n", buf); - exit(EXIT_FAILURE); + HDfprintf(stderr, "pio_perf: invalid --debug option %s\n", buf); + HDexit(EXIT_FAILURE); } } @@ -1396,13 +1396,13 @@ parse_command_line(int argc, char *argv[]) cl_opts->num_bpp = parse_size_directive(opt_arg); break; case 'F': - cl_opts->num_files = atoi(opt_arg); + cl_opts->num_files = HDatoi(opt_arg); break; case 'g': cl_opts->dim2d = 1; break; case 'i': - cl_opts->num_iters = atoi(opt_arg); + cl_opts->num_iters = HDatoi(opt_arg); break; case 'I': cl_opts->interleaved = 1; @@ -1411,10 +1411,10 @@ parse_command_line(int argc, char *argv[]) cl_opts->output_file = opt_arg; break; case 'p': - cl_opts->min_num_procs = atoi(opt_arg); + cl_opts->min_num_procs = HDatoi(opt_arg); break; case 'P': - cl_opts->max_num_procs = atoi(opt_arg); + cl_opts->max_num_procs = HDatoi(opt_arg); break; case 'T': cl_opts->h5_threshold = parse_size_directive(opt_arg); @@ -1432,7 +1432,7 @@ parse_command_line(int argc, char *argv[]) case '?': default: usage(progname); - free(cl_opts); + HDfree(cl_opts); return NULL; } } @@ -1526,8 +1526,8 @@ parse_size_directive(const char *size) s *= ONE_GB; break; default: - fprintf(stderr, "Illegal size specifier '%c'\n", *endptr); - exit(EXIT_FAILURE); + HDfprintf(stderr, "Illegal size specifier '%c'\n", *endptr); + HDexit(EXIT_FAILURE); } } @@ -1540,7 +1540,7 @@ parse_size_directive(const char *size) * Return: Nothing * Programmer: Bill Wendling, 31. October 2001 * Modifications: - * Added 2D testing (Christian Chilan, 10. August 2005) + * Added 2D testing (Christian Chilan, 10. August 2005) */ static void usage(const char *prog) @@ -1550,125 +1550,125 @@ usage(const char *prog) MPI_Comm_rank(pio_comm_g, &myrank); if (myrank == 0) { - print_version(prog); - printf("usage: %s [OPTIONS]\n", prog); - printf(" OPTIONS\n"); - printf(" -h, --help Print a usage message and exit\n"); - printf(" -a S, --align=S Alignment of objects in HDF5 file [default: 1]\n"); - printf(" -A AL, --api=AL Which APIs to test [default: all of them]\n"); + print_version(prog); + HDprintf("usage: %s [OPTIONS]\n", prog); + HDprintf(" OPTIONS\n"); + HDprintf(" -h, --help Print a usage message and exit\n"); + HDprintf(" -a S, --align=S Alignment of objects in HDF5 file [default: 1]\n"); + HDprintf(" -A AL, --api=AL Which APIs to test [default: all of them]\n"); #if 0 - printf(" -b, --binary The elusive binary option\n"); + HDprintf(" -b, --binary The elusive binary option\n"); #endif /* 0 */ - printf(" -B S, --block-size=S Block size within transfer buffer\n"); - printf(" (see below for description)\n"); - printf(" [default: half the number of bytes per process\n"); - printf(" per dataset]\n"); - printf(" -c, --chunk Create HDF5 datasets using chunked storage\n"); - printf(" [default: contiguous storage]\n"); - printf(" -C, --collective Use collective I/O for MPI and HDF5 APIs\n"); - printf(" [default: independent I/O)\n"); - printf(" -d N, --num-dsets=N Number of datasets per file [default: 1]\n"); - printf(" -D DL, --debug=DL Indicate the debugging level\n"); - printf(" [default: no debugging]\n"); - printf(" -e S, --num-bytes=S Number of bytes per process per dataset\n"); - printf(" (see below for description)\n"); - printf(" [default: 256K for 1D, 8K for 2D]\n"); - printf(" -F N, --num-files=N Number of files [default: 1]\n"); - printf(" -g, --geometry Use 2D geometry [default: 1D geometry]\n"); - printf(" -i N, --num-iterations=N Number of iterations to perform [default: 1]\n"); - printf(" -I, --interleaved Interleaved access pattern\n"); - printf(" (see below for example)\n"); - printf(" [default: Contiguous access pattern]\n"); - printf(" -o F, --output=F Output raw data into file F [default: none]\n"); - printf(" -p N, --min-num-processes=N Minimum number of processes to use [default: 1]\n"); - printf(" -P N, --max-num-processes=N Maximum number of processes to use\n"); - printf(" [default: all MPI_COMM_WORLD processes ]\n"); - printf(" -T S, --threshold=S Threshold for alignment of objects in HDF5 file\n"); - printf(" [default: 1]\n"); - printf(" -w, --write-only Perform write tests not the read tests\n"); - printf(" -x S, --min-xfer-size=S Minimum transfer buffer size\n"); - printf(" (see below for description)\n"); - printf(" [default: half the number of bytes per process\n"); - printf(" per dataset]\n"); - printf(" -X S, --max-xfer-size=S Maximum transfer buffer size\n"); - printf(" [default: the number of bytes per process per\n"); - printf(" dataset]\n"); - printf("\n"); - printf(" F - is a filename.\n"); - printf(" N - is an integer >=0.\n"); - printf(" S - is a size specifier, an integer >=0 followed by a size indicator:\n"); - printf(" K - Kilobyte (%d)\n", ONE_KB); - printf(" M - Megabyte (%d)\n", ONE_MB); - printf(" G - Gigabyte (%d)\n", ONE_GB); - printf("\n"); - printf(" Example: '37M' is 37 megabytes or %d bytes\n", 37*ONE_MB); - printf("\n"); - printf(" AL - is an API list. Valid values are:\n"); - printf(" phdf5 - Parallel HDF5\n"); - printf(" mpiio - MPI-I/O\n"); - printf(" posix - POSIX\n"); - printf("\n"); - printf(" Example: --api=mpiio,phdf5\n"); - printf("\n"); - printf(" Dataset size:\n"); - printf(" Depending on the selected geometry, each test dataset is either a linear\n"); - printf(" array of size bytes-per-process * num-processes, or a square array of size\n"); - printf(" (bytes-per-process * num-processes) x (bytes-per-process * num-processes).\n"); - printf("\n"); - printf(" Block size vs. Transfer buffer size:\n"); - printf(" buffer-size controls the size of the memory buffer, which is broken into\n"); - printf(" blocks and written to the file. Depending on the selected geometry, each\n"); - printf(" block can be a linear array of size block-size or a square array of size\n"); - printf(" block-size x block-size. The arrangement in which blocks are written is\n"); - printf(" determined by the access pattern.\n"); - printf("\n"); - printf(" In 1D geometry, the transfer buffer is a linear array of size buffer-size.\n"); - printf(" In 2D geometry, it is a rectangular array of size block-size x buffer-size\n"); - printf(" or buffer-size x block-size if interleaved pattern is selected.\n"); - printf("\n"); - printf(" Interleaved and Contiguous patterns in 1D geometry:\n"); - printf(" When contiguous access pattern is chosen, the dataset is evenly divided\n"); - printf(" into num-processes regions and each process writes data to its own region.\n"); - printf(" When interleaved blocks are written to a dataset, space for the first\n"); - printf(" block of the first process is allocated in the dataset, then space is\n"); - printf(" allocated for the first block of the second process, etc. until space is\n"); - printf(" allocated for the first block of each process, then space is allocated for\n"); - printf(" the second block of the first process, the second block of the second\n"); - printf(" process, etc.\n"); - printf("\n"); - printf(" For example, with a 3 process run, 512KB bytes-per-process, 256KB transfer\n"); - printf(" buffer size, and 64KB block size, each process must issue 2 transfer\n"); - printf(" requests to complete access to the dataset.\n"); - printf(" Contiguous blocks of the first transfer request are written like so:\n"); - printf(" 1111----2222----3333----\n"); - printf(" Interleaved blocks of the first transfer request are written like so:\n"); - printf(" 123123123123------------\n"); - printf(" The actual number of I/O operations involved in a transfer request\n"); - printf(" depends on the access pattern and communication mode.\n"); - printf(" When using independent I/O with interleaved pattern, each process\n"); - printf(" performs 4 small non-contiguous I/O operations per transfer request.\n"); - printf(" If collective I/O is turned on, the combined content of the buffers of\n"); - printf(" the 3 processes will be written using one collective I/O operation\n"); - printf(" per transfer request.\n"); - printf("\n"); - printf(" For information about access patterns in 2D geometry, please refer to the\n"); - printf(" HDF5 Reference Manual.\n"); - printf("\n"); - printf(" DL - is a list of debugging flags. Valid values are:\n"); - printf(" 1 - Minimal\n"); - printf(" 2 - Not quite everything\n"); - printf(" 3 - Everything\n"); - printf(" 4 - The kitchen sink\n"); - printf(" r - Raw data I/O throughput information\n"); - printf(" t - Times as well as throughputs\n"); - printf(" v - Verify data correctness\n"); - printf("\n"); - printf(" Example: --debug=2,r,t\n"); - printf("\n"); - printf(" Environment variables:\n"); - printf(" HDF5_NOCLEANUP Do not remove data files if set [default remove]\n"); - printf(" HDF5_MPI_INFO MPI INFO object key=value separated by ;\n"); - printf(" HDF5_PARAPREFIX Paralllel data files prefix\n"); + HDprintf(" -B S, --block-size=S Block size within transfer buffer\n"); + HDprintf(" (see below for description)\n"); + HDprintf(" [default: half the number of bytes per process\n"); + HDprintf(" per dataset]\n"); + HDprintf(" -c, --chunk Create HDF5 datasets using chunked storage\n"); + HDprintf(" [default: contiguous storage]\n"); + HDprintf(" -C, --collective Use collective I/O for MPI and HDF5 APIs\n"); + HDprintf(" [default: independent I/O)\n"); + HDprintf(" -d N, --num-dsets=N Number of datasets per file [default: 1]\n"); + HDprintf(" -D DL, --debug=DL Indicate the debugging level\n"); + HDprintf(" [default: no debugging]\n"); + HDprintf(" -e S, --num-bytes=S Number of bytes per process per dataset\n"); + HDprintf(" (see below for description)\n"); + HDprintf(" [default: 256K for 1D, 8K for 2D]\n"); + HDprintf(" -F N, --num-files=N Number of files [default: 1]\n"); + HDprintf(" -g, --geometry Use 2D geometry [default: 1D geometry]\n"); + HDprintf(" -i N, --num-iterations=N Number of iterations to perform [default: 1]\n"); + HDprintf(" -I, --interleaved Interleaved access pattern\n"); + HDprintf(" (see below for example)\n"); + HDprintf(" [default: Contiguous access pattern]\n"); + HDprintf(" -o F, --output=F Output raw data into file F [default: none]\n"); + HDprintf(" -p N, --min-num-processes=N Minimum number of processes to use [default: 1]\n"); + HDprintf(" -P N, --max-num-processes=N Maximum number of processes to use\n"); + HDprintf(" [default: all MPI_COMM_WORLD processes ]\n"); + HDprintf(" -T S, --threshold=S Threshold for alignment of objects in HDF5 file\n"); + HDprintf(" [default: 1]\n"); + HDprintf(" -w, --write-only Perform write tests not the read tests\n"); + HDprintf(" -x S, --min-xfer-size=S Minimum transfer buffer size\n"); + HDprintf(" (see below for description)\n"); + HDprintf(" [default: half the number of bytes per process\n"); + HDprintf(" per dataset]\n"); + HDprintf(" -X S, --max-xfer-size=S Maximum transfer buffer size\n"); + HDprintf(" [default: the number of bytes per process per\n"); + HDprintf(" dataset]\n"); + HDprintf("\n"); + HDprintf(" F - is a filename.\n"); + HDprintf(" N - is an integer >=0.\n"); + HDprintf(" S - is a size specifier, an integer >=0 followed by a size indicator:\n"); + HDprintf(" K - Kilobyte (%d)\n", ONE_KB); + HDprintf(" M - Megabyte (%d)\n", ONE_MB); + HDprintf(" G - Gigabyte (%d)\n", ONE_GB); + HDprintf("\n"); + HDprintf(" Example: '37M' is 37 megabytes or %d bytes\n", 37*ONE_MB); + HDprintf("\n"); + HDprintf(" AL - is an API list. Valid values are:\n"); + HDprintf(" phdf5 - Parallel HDF5\n"); + HDprintf(" mpiio - MPI-I/O\n"); + HDprintf(" posix - POSIX\n"); + HDprintf("\n"); + HDprintf(" Example: --api=mpiio,phdf5\n"); + HDprintf("\n"); + HDprintf(" Dataset size:\n"); + HDprintf(" Depending on the selected geometry, each test dataset is either a linear\n"); + HDprintf(" array of size bytes-per-process * num-processes, or a square array of size\n"); + HDprintf(" (bytes-per-process * num-processes) x (bytes-per-process * num-processes).\n"); + HDprintf("\n"); + HDprintf(" Block size vs. Transfer buffer size:\n"); + HDprintf(" buffer-size controls the size of the memory buffer, which is broken into\n"); + HDprintf(" blocks and written to the file. Depending on the selected geometry, each\n"); + HDprintf(" block can be a linear array of size block-size or a square array of size\n"); + HDprintf(" block-size x block-size. The arrangement in which blocks are written is\n"); + HDprintf(" determined by the access pattern.\n"); + HDprintf("\n"); + HDprintf(" In 1D geometry, the transfer buffer is a linear array of size buffer-size.\n"); + HDprintf(" In 2D geometry, it is a rectangular array of size block-size x buffer-size\n"); + HDprintf(" or buffer-size x block-size if interleaved pattern is selected.\n"); + HDprintf("\n"); + HDprintf(" Interleaved and Contiguous patterns in 1D geometry:\n"); + HDprintf(" When contiguous access pattern is chosen, the dataset is evenly divided\n"); + HDprintf(" into num-processes regions and each process writes data to its own region.\n"); + HDprintf(" When interleaved blocks are written to a dataset, space for the first\n"); + HDprintf(" block of the first process is allocated in the dataset, then space is\n"); + HDprintf(" allocated for the first block of the second process, etc. until space is\n"); + HDprintf(" allocated for the first block of each process, then space is allocated for\n"); + HDprintf(" the second block of the first process, the second block of the second\n"); + HDprintf(" process, etc.\n"); + HDprintf("\n"); + HDprintf(" For example, with a 3 process run, 512KB bytes-per-process, 256KB transfer\n"); + HDprintf(" buffer size, and 64KB block size, each process must issue 2 transfer\n"); + HDprintf(" requests to complete access to the dataset.\n"); + HDprintf(" Contiguous blocks of the first transfer request are written like so:\n"); + HDprintf(" 1111----2222----3333----\n"); + HDprintf(" Interleaved blocks of the first transfer request are written like so:\n"); + HDprintf(" 123123123123------------\n"); + HDprintf(" The actual number of I/O operations involved in a transfer request\n"); + HDprintf(" depends on the access pattern and communication mode.\n"); + HDprintf(" When using independent I/O with interleaved pattern, each process\n"); + HDprintf(" performs 4 small non-contiguous I/O operations per transfer request.\n"); + HDprintf(" If collective I/O is turned on, the combined content of the buffers of\n"); + HDprintf(" the 3 processes will be written using one collective I/O operation\n"); + HDprintf(" per transfer request.\n"); + HDprintf("\n"); + HDprintf(" For information about access patterns in 2D geometry, please refer to the\n"); + HDprintf(" HDF5 Reference Manual.\n"); + HDprintf("\n"); + HDprintf(" DL - is a list of debugging flags. Valid values are:\n"); + HDprintf(" 1 - Minimal\n"); + HDprintf(" 2 - Not quite everything\n"); + HDprintf(" 3 - Everything\n"); + HDprintf(" 4 - The kitchen sink\n"); + HDprintf(" r - Raw data I/O throughput information\n"); + HDprintf(" t - Times as well as throughputs\n"); + HDprintf(" v - Verify data correctness\n"); + HDprintf("\n"); + HDprintf(" Example: --debug=2,r,t\n"); + HDprintf("\n"); + HDprintf(" Environment variables:\n"); + HDprintf(" HDF5_NOCLEANUP Do not remove data files if set [default remove]\n"); + HDprintf(" HDF5_MPI_INFO MPI INFO object key=value separated by ;\n"); + HDprintf(" HDF5_PARAPREFIX Paralllel data files prefix\n"); fflush(stdout); } /* end if */ } /* end usage() */ @@ -1685,7 +1685,7 @@ usage(const char *prog) int main(void) { - printf("No parallel IO performance because parallel is not configured\n"); + HDprintf("No parallel IO performance because parallel is not configured\n"); return EXIT_SUCCESS; } /* end main */ diff --git a/tools/test/perform/pio_standalone.h b/tools/test/perform/pio_standalone.h index a40cff8..e6db2e8 100644 --- a/tools/test/perform/pio_standalone.h +++ b/tools/test/perform/pio_standalone.h @@ -294,6 +294,7 @@ H5_DLL int HDfprintf (FILE *stream, const char *fmt, ...); #define HDpipe(F) pipe(F) #define HDpow(X,Y) pow(X,Y) /* printf() variable arguments */ +#define HDprintf(...) HDfprintf(stdout, __VA_ARGS__) #define HDputc(C,F) putc(C,F) #define HDputchar(C) putchar(C) #define HDputs(S) puts(S) @@ -355,6 +356,7 @@ H5_DLL int c99_snprintf(char* str, size_t size, const char* format, ...); #define HDsnprintf snprintf /*varargs*/ #endif /* sprintf() variable arguments */ +#define HDsprintf sprintf /*varargs*/ #define HDsqrt(X) sqrt(X) #ifdef H5_HAVE_RAND_R H5_DLL void HDsrand(unsigned int seed); diff --git a/tools/test/perform/sio_engine.c b/tools/test/perform/sio_engine.c index aefd2b3..488f575 100644 --- a/tools/test/perform/sio_engine.c +++ b/tools/test/perform/sio_engine.c @@ -41,7 +41,7 @@ #define GOTOERROR(errcode) { ret_code = errcode; goto done; } #define ERRMSG(mesg) { \ - fprintf(stderr, "*** Assertion failed (%s) at line %4d in %s\n", \ + HDfprintf(stderr, "*** Assertion failed (%s) at line %4d in %s\n", \ mesg, (int)__LINE__, __FILE__); \ } @@ -198,7 +198,7 @@ do_sio(parameters param, results *res) if (sio_debug_level >= 4) /* output all of the times for all iterations */ - fprintf(output, "Timer details:\n"); + HDfprintf(output, "Timer details:\n"); /* * Write performance measurement @@ -490,7 +490,7 @@ do_write(results *res, file_descr *fd, parameters *parms, void *buffer) /* Create the dataset transfer property list */ h5dxpl = H5Pcreate(H5P_DATASET_XFER); if (h5dxpl < 0) { - fprintf(stderr, "HDF5 Property List Create failed\n"); + HDfprintf(stderr, "HDF5 Property List Create failed\n"); GOTOERROR(FAIL); } @@ -512,7 +512,7 @@ do_write(results *res, file_descr *fd, parameters *parms, void *buffer) h5dcpl = H5Pcreate(H5P_DATASET_CREATE); if (h5dcpl < 0) { - fprintf(stderr, "HDF5 Property List Create failed\n"); + HDfprintf(stderr, "HDF5 Property List Create failed\n"); GOTOERROR(FAIL); } @@ -520,12 +520,12 @@ do_write(results *res, file_descr *fd, parameters *parms, void *buffer) /* Set the chunk size to be the same as the buffer size */ hrc = H5Pset_chunk(h5dcpl, rank, h5chunk); if (hrc < 0) { - fprintf(stderr, "HDF5 Property List Set failed\n"); + HDfprintf(stderr, "HDF5 Property List Set failed\n"); GOTOERROR(FAIL); } /* end if */ } /* end if */ - sprintf(dname, "Dataset_%ld", (unsigned long)parms->num_bytes); + HDsprintf(dname, "Dataset_%ld", (unsigned long)parms->num_bytes); h5ds_id = H5Dcreate2(fd->h5fd, dname, ELMT_H5_TYPE, h5dset_space_id, H5P_DEFAULT, h5dcpl, H5P_DEFAULT); @@ -556,7 +556,7 @@ do_write(results *res, file_descr *fd, parameters *parms, void *buffer) hrc = dset_write(rank-1, fd, parms, buffer); if (hrc < 0) { - fprintf(stderr, "Error in dataset write\n"); + HDfprintf(stderr, "Error in dataset write\n"); GOTOERROR(FAIL); } @@ -571,7 +571,7 @@ do_write(results *res, file_descr *fd, parameters *parms, void *buffer) hrc = H5Dclose(h5ds_id); if (hrc < 0) { - fprintf(stderr, "HDF5 Dataset Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Close failed\n"); GOTOERROR(FAIL); } @@ -584,7 +584,7 @@ done: if (h5dset_space_id != -1) { hrc = H5Sclose(h5dset_space_id); if (hrc < 0){ - fprintf(stderr, "HDF5 Dataset Space Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Space Close failed\n"); ret_code = FAIL; } else { h5dset_space_id = -1; @@ -594,7 +594,7 @@ done: if (h5mem_space_id != -1) { hrc = H5Sclose(h5mem_space_id); if (hrc < 0) { - fprintf(stderr, "HDF5 Memory Space Close failed\n"); + HDfprintf(stderr, "HDF5 Memory Space Close failed\n"); ret_code = FAIL; } else { h5mem_space_id = -1; @@ -604,7 +604,7 @@ done: if (h5dxpl != -1) { hrc = H5Pclose(h5dxpl); if (hrc < 0) { - fprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); ret_code = FAIL; } else { h5dxpl = -1; @@ -837,7 +837,7 @@ do_read(results *res, file_descr *fd, parameters *parms, void *buffer) /* Create the dataset transfer property list */ h5dxpl = H5Pcreate(H5P_DATASET_XFER); if (h5dxpl < 0) { - fprintf(stderr, "HDF5 Property List Create failed\n"); + HDfprintf(stderr, "HDF5 Property List Create failed\n"); GOTOERROR(FAIL); } break; @@ -856,7 +856,7 @@ do_read(results *res, file_descr *fd, parameters *parms, void *buffer) break; case HDF5: - sprintf(dname, "Dataset_%ld", (long)parms->num_bytes); + HDsprintf(dname, "Dataset_%ld", (long)parms->num_bytes); h5ds_id = H5Dopen2(fd->h5fd, dname, H5P_DEFAULT); if (h5ds_id < 0) { HDfprintf(stderr, "HDF5 Dataset open failed\n"); @@ -876,7 +876,7 @@ do_read(results *res, file_descr *fd, parameters *parms, void *buffer) hrc = dset_read(rank-1, fd, parms, buffer, buffer2); if (hrc < 0) { - fprintf(stderr, "Error in dataset read\n"); + HDfprintf(stderr, "Error in dataset read\n"); GOTOERROR(FAIL); } @@ -890,7 +890,7 @@ do_read(results *res, file_descr *fd, parameters *parms, void *buffer) hrc = H5Dclose(h5ds_id); if (hrc < 0) { - fprintf(stderr, "HDF5 Dataset Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Close failed\n"); GOTOERROR(FAIL); } @@ -903,7 +903,7 @@ done: if (h5dset_space_id != -1) { hrc = H5Sclose(h5dset_space_id); if (hrc < 0){ - fprintf(stderr, "HDF5 Dataset Space Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Space Close failed\n"); ret_code = FAIL; } else { h5dset_space_id = -1; @@ -913,7 +913,7 @@ done: if (h5mem_space_id != -1) { hrc = H5Sclose(h5mem_space_id); if (hrc < 0) { - fprintf(stderr, "HDF5 Memory Space Close failed\n"); + HDfprintf(stderr, "HDF5 Memory Space Close failed\n"); ret_code = FAIL; } else { h5mem_space_id = -1; @@ -923,7 +923,7 @@ done: if (h5dxpl != -1) { hrc = H5Pclose(h5dxpl); if (hrc < 0) { - fprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); + HDfprintf(stderr, "HDF5 Dataset Transfer Property List Close failed\n"); ret_code = FAIL; } else { h5dxpl = -1; @@ -1089,7 +1089,7 @@ do_fopen(parameters *param, char *fname, file_descr *fd /*out*/, int flags) fapl = set_vfd(param); if (fapl < 0) { - fprintf(stderr, "HDF5 Property List Create failed\n"); + HDfprintf(stderr, "HDF5 Property List Create failed\n"); GOTOERROR(FAIL); } @@ -1110,7 +1110,7 @@ do_fopen(parameters *param, char *fname, file_descr *fd /*out*/, int flags) if (fd->h5fd < 0) { - fprintf(stderr, "HDF5 File Create failed(%s)\n", fname); + HDfprintf(stderr, "HDF5 File Create failed(%s)\n", fname); GOTOERROR(FAIL); } break; @@ -1176,7 +1176,7 @@ set_vfd(parameters *param) HDassert(HDstrlen(multi_letters)==H5FD_MEM_NTYPES); for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,mt)) { memb_fapl[mt] = H5P_DEFAULT; - sprintf(sv[mt], "%%s-%c.h5", multi_letters[mt]); + HDsprintf(sv[mt], "%%s-%c.h5", multi_letters[mt]); memb_name[mt] = sv[mt]; memb_addr[mt] = (haddr_t)MAX(mt - 1,0) * (HADDR_MAX / 10); } @@ -1225,7 +1225,7 @@ do_fclose(iotype iot, file_descr *fd /*out*/) rc = POSIXCLOSE(fd->posixfd); if (rc != 0){ - fprintf(stderr, "POSIX File Close failed\n"); + HDfprintf(stderr, "POSIX File Close failed\n"); GOTOERROR(FAIL); } @@ -1236,7 +1236,7 @@ do_fclose(iotype iot, file_descr *fd /*out*/) hrc = H5Fclose(fd->h5fd); if (hrc < 0) { - fprintf(stderr, "HDF5 File Close failed\n"); + HDfprintf(stderr, "HDF5 File Close failed\n"); GOTOERROR(FAIL); } diff --git a/tools/test/perform/sio_perf.c b/tools/test/perform/sio_perf.c index 731be47..ff9e2b4 100644 --- a/tools/test/perform/sio_perf.c +++ b/tools/test/perform/sio_perf.c @@ -281,14 +281,14 @@ struct options { int buf_rank; /* Rank */ int order_rank; /* Rank */ int chk_rank; /* Rank */ - int print_times; /* print times as well as throughputs */ - int print_raw; /* print raw data throughput info */ + int print_times; /* print times as well as throughputs */ + int print_raw; /* print raw data throughput info */ hsize_t h5_alignment; /* alignment in HDF5 file */ hsize_t h5_threshold; /* threshold for alignment in HDF5 file */ - int h5_use_chunks; /* Make HDF5 dataset chunked */ - int h5_write_only; /* Perform the write tests only */ - int h5_extendable; /* Perform the write tests only */ - int verify; /* Verify data correctness */ + int h5_use_chunks; /* Make HDF5 dataset chunked */ + int h5_write_only; /* Perform the write tests only */ + int h5_extendable; /* Perform the write tests only */ + int verify; /* Verify data correctness */ vfdtype vfd; /* File driver */ size_t page_buffer_size; size_t page_size; @@ -333,7 +333,7 @@ main(int argc, char **argv) /* Initialize h5tools lib */ h5tools_init(); #endif - + output = stdout; opts = parse_command_line(argc, argv); @@ -345,8 +345,8 @@ main(int argc, char **argv) if (opts->output_file) { if ((output = HDfopen(opts->output_file, "w")) == NULL) { - fprintf(stderr, "%s: cannot open output file\n", progname); - perror(opts->output_file); + HDfprintf(stderr, "%s: cannot open output file\n", progname); + HDperror(opts->output_file); goto finish; } } @@ -356,7 +356,7 @@ main(int argc, char **argv) run_test_loop(opts); finish: - free(opts); + HDfree(opts); return exit_value; } @@ -385,8 +385,8 @@ static void run_test_loop(struct options *opts) { parameters parms; - int i; - size_t buf_bytes; + int i; + size_t buf_bytes; /* load options into parameter structure */ parms.num_files = opts->num_files; @@ -552,7 +552,7 @@ run_test(iotype iot, parameters parms, struct options *opts) /* * Show various statistics */ - /* Write statistics */ + /* Write statistics */ /* Print the raw data throughput if desired */ if (opts->print_raw) { /* accumulate and output the max, min, and average "raw write" times */ @@ -598,7 +598,7 @@ run_test(iotype iot, parameters parms, struct options *opts) output_results(opts,"Write Open-Close",write_gross_mm_table,parms.num_iters,raw_size); if (!parms.h5_write_only) { - /* Read statistics */ + /* Read statistics */ /* Print the raw data throughput if desired */ if (opts->print_raw) { /* accumulate and output the max, min, and average "raw read" times */ @@ -647,16 +647,16 @@ run_test(iotype iot, parameters parms, struct options *opts) } /* clean up our mess */ - free(write_sys_mm_table); - free(write_mm_table); - free(write_gross_mm_table); - free(write_raw_mm_table); + HDfree(write_sys_mm_table); + HDfree(write_mm_table); + HDfree(write_gross_mm_table); + HDfree(write_raw_mm_table); if (!parms.h5_write_only) { - free(read_sys_mm_table); - free(read_mm_table); - free(read_gross_mm_table); - free(read_raw_mm_table); + HDfree(read_sys_mm_table); + HDfree(read_mm_table); + HDfree(read_gross_mm_table); + HDfree(read_raw_mm_table); } return ret_value; @@ -790,9 +790,9 @@ output_report(const char *fmt, ...) { va_list ap; - va_start(ap, fmt); - vfprintf(output, fmt, ap); - va_end(ap); + HDva_start(ap, fmt); + HDvfprintf(output, fmt, ap); + HDva_end(ap); } /* @@ -806,10 +806,10 @@ output_report(const char *fmt, ...) static void print_indent(register int indent) { - indent *= TAB_SPACE; + indent *= TAB_SPACE; - for (; indent > 0; --indent) - fputc(' ', output); + for (; indent > 0; --indent) + HDfputc(' ', output); } static void @@ -833,9 +833,9 @@ static void print_io_api(long io_types) { if (io_types & SIO_POSIX) - HDfprintf(output, "posix "); + HDfprintf(output, "posix "); if (io_types & SIO_HDF5) - HDfprintf(output, "hdf5 "); + HDfprintf(output, "hdf5 "); HDfprintf(output, "\n"); } @@ -845,7 +845,7 @@ report_parameters(struct options *opts) int i, rank; rank = opts->dset_rank; - print_version("HDF5 Library"); /* print library version */ + print_version("HDF5 Library"); /* print library version */ HDfprintf(output, "==== Parameters ====\n"); HDfprintf(output, "IO API="); @@ -1004,7 +1004,7 @@ parse_command_line(int argc, char *argv[]) HDmemset(buf, '\0', sizeof(buf)); for (i = 0; *end != '\0' && *end != ','; ++end) - if (isalnum(*end) && i < 10) + if (HDisalnum(*end) && i < 10) buf[i++] = *end; if (!HDstrcasecmp(buf, "hdf5")) { @@ -1012,9 +1012,9 @@ parse_command_line(int argc, char *argv[]) } else if (!HDstrcasecmp(buf, "posix")) { cl_opts->io_types |= SIO_POSIX; } else { - fprintf(stderr, "sio_perf: invalid --api option %s\n", + HDfprintf(stderr, "sio_perf: invalid --api option %s\n", buf); - exit(EXIT_FAILURE); + HDexit(EXIT_FAILURE); } if (*end == '\0') @@ -1043,7 +1043,7 @@ parse_command_line(int argc, char *argv[]) HDmemset(buf, '\0', sizeof(buf)); for (i = 0; *end != '\0' && *end != ','; ++end) - if (isalnum(*end) && i < 10) + if (HDisalnum(*end) && i < 10) buf[i++] = *end; cl_opts->chk_size[j] = parse_size_directive(buf); @@ -1071,17 +1071,17 @@ parse_command_line(int argc, char *argv[]) HDmemset(buf, '\0', sizeof(buf)); for (i = 0; *end != '\0' && *end != ','; ++end) - if (isalnum(*end) && i < 10) + if (HDisalnum(*end) && i < 10) buf[i++] = *end; - if (strlen(buf) > 1 || isdigit(buf[0])) { + if (HDstrlen(buf) > 1 || HDisdigit(buf[0])) { size_t j; for (j = 0; j < 10 && buf[j] != '\0'; ++j) - if (!isdigit(buf[j])) { - fprintf(stderr, "sio_perf: invalid --debug option %s\n", + if (!HDisdigit(buf[j])) { + HDfprintf(stderr, "sio_perf: invalid --debug option %s\n", buf); - exit(EXIT_FAILURE); + HDexit(EXIT_FAILURE); } sio_debug_level = atoi(buf); @@ -1105,8 +1105,8 @@ parse_command_line(int argc, char *argv[]) cl_opts->verify = TRUE; break; default: - fprintf(stderr, "sio_perf: invalid --debug option %s\n", buf); - exit(EXIT_FAILURE); + HDfprintf(stderr, "sio_perf: invalid --debug option %s\n", buf); + HDexit(EXIT_FAILURE); } } @@ -1129,7 +1129,7 @@ parse_command_line(int argc, char *argv[]) HDmemset(buf, '\0', sizeof(buf)); for (i = 0; *end != '\0' && *end != ','; ++end) - if (isalnum(*end) && i < 10) + if (HDisalnum(*end) && i < 10) buf[i++] = *end; cl_opts->dset_size[j] = parse_size_directive(buf); @@ -1147,7 +1147,7 @@ parse_command_line(int argc, char *argv[]) break; case 'i': - cl_opts->num_iters = atoi(opt_arg); + cl_opts->num_iters = HDatoi(opt_arg); break; case 'o': cl_opts->output_file = opt_arg; @@ -1171,9 +1171,9 @@ parse_command_line(int argc, char *argv[]) } else if (!HDstrcasecmp(opt_arg, "direct")) { cl_opts->vfd=direct; } else { - fprintf(stderr, "sio_perf: invalid --api option %s\n", + HDfprintf(stderr, "sio_perf: invalid --api option %s\n", opt_arg); - exit(EXIT_FAILURE); + HDexit(EXIT_FAILURE); } break; case 'w': @@ -1193,7 +1193,7 @@ parse_command_line(int argc, char *argv[]) HDmemset(buf, '\0', sizeof(buf)); for (i = 0; *end != '\0' && *end != ','; ++end) - if (isalnum(*end) && i < 10) + if (HDisalnum(*end) && i < 10) buf[i++] = *end; cl_opts->buf_size[j] = parse_size_directive(buf); @@ -1221,7 +1221,7 @@ parse_command_line(int argc, char *argv[]) HDmemset(buf, '\0', sizeof(buf)); for (i = 0; *end != '\0' && *end != ','; ++end) - if (isalnum(*end) && i < 10) + if (HDisalnum(*end) && i < 10) buf[i++] = *end; cl_opts->order[j] = (int)parse_size_directive(buf); @@ -1243,7 +1243,7 @@ parse_command_line(int argc, char *argv[]) case '?': default: usage(progname); - free(cl_opts); + HDfree(cl_opts); return NULL; } } @@ -1339,8 +1339,8 @@ parse_size_directive(const char *size) break; default: - fprintf(stderr, "Illegal size specifier '%c'\n", *endptr); - exit(EXIT_FAILURE); + HDfprintf(stderr, "Illegal size specifier '%c'\n", *endptr); + HDexit(EXIT_FAILURE); } } @@ -1357,72 +1357,72 @@ parse_size_directive(const char *size) static void usage(const char *prog) { - print_version(prog); - printf("usage: %s [OPTIONS]\n", prog); - printf(" OPTIONS\n"); - printf(" -h Print an usage message and exit\n"); - printf(" -A AL Which APIs to test\n"); - printf(" [default: all of them]\n"); - printf(" -c SL Selects chunked storage and defines chunks dimensions\n"); - printf(" and sizes\n"); - printf(" [default: Off]\n"); - printf(" -e SL Dimensions and sizes of dataset\n"); - printf(" [default: 100,200]\n"); - printf(" -i N Number of iterations to perform\n"); - printf(" [default: 1]\n"); - printf(" -r NL Dimension access order (see below for description)\n"); - printf(" [default: 1,2]\n"); - printf(" -t Selects extendable dimensions for HDF5 dataset\n"); - printf(" [default: Off]\n"); - printf(" -v VFD Selects file driver for HDF5 access\n"); - printf(" [default: sec2]\n"); - printf(" -w Perform write tests, not the read tests\n"); - printf(" [default: Off]\n"); - printf(" -x SL Dimensions and sizes of the transfer buffer\n"); - printf(" [default: 10,20]\n"); - printf("\n"); - printf(" N - is an integer > 0.\n"); - printf("\n"); - printf(" S - is a size specifier, an integer > 0 followed by a size indicator:\n"); - printf(" K - Kilobyte (%d)\n", ONE_KB); - printf(" M - Megabyte (%d)\n", ONE_MB); - printf(" G - Gigabyte (%d)\n", ONE_GB); - printf("\n"); - printf(" Example: '37M' is 37 megabytes or %d bytes\n", 37*ONE_MB); - printf("\n"); - printf(" AL - is an API list. Valid values are:\n"); - printf(" hdf5 - HDF5\n"); - printf(" posix - POSIX\n"); - printf("\n"); - printf(" Example: -A posix,hdf5\n"); - printf("\n"); - printf(" NL - is list of integers (N) separated by commas.\n"); - printf("\n"); - printf(" Example: 1,2,3\n"); - printf("\n"); - printf(" SL - is list of size specifiers (S) separated by commas.\n"); - printf("\n"); - printf(" Example: 2K,2K,3K\n"); - printf("\n"); - printf(" The example defines an object (dataset, tranfer buffer) with three\n"); - printf(" dimensions. Be aware that as the number of dimensions increases, the\n"); - printf(" the total size of the object increases exponentially.\n"); - printf("\n"); - printf(" VFD - is an HDF5 file driver specifier. Valid values are:\n"); - printf(" sec2, stdio, core, split, multi, family, direct\n"); - printf("\n"); - printf(" Dimension access order:\n"); - printf(" Data access starts at the cardinal origin of the dataset using the\n"); - printf(" transfer buffer. The next access occurs on a dataset region next to\n"); - printf(" the previous one. For a multidimensional dataset, there are several\n"); - printf(" directions as to where to proceed. This can be specified in the dimension\n"); - printf(" access order. For example, -r 1,2 states that the tool should traverse\n"); - printf(" dimension 1 first, and then dimension 2.\n"); - printf("\n"); - printf(" Environment variables:\n"); - printf(" HDF5_NOCLEANUP Do not remove data files if set [default remove]\n"); - printf(" HDF5_PREFIX Data file prefix\n"); - printf("\n"); + print_version(prog); + HDprintf("usage: %s [OPTIONS]\n", prog); + HDprintf(" OPTIONS\n"); + HDprintf(" -h Print an usage message and exit\n"); + HDprintf(" -A AL Which APIs to test\n"); + HDprintf(" [default: all of them]\n"); + HDprintf(" -c SL Selects chunked storage and defines chunks dimensions\n"); + HDprintf(" and sizes\n"); + HDprintf(" [default: Off]\n"); + HDprintf(" -e SL Dimensions and sizes of dataset\n"); + HDprintf(" [default: 100,200]\n"); + HDprintf(" -i N Number of iterations to perform\n"); + HDprintf(" [default: 1]\n"); + HDprintf(" -r NL Dimension access order (see below for description)\n"); + HDprintf(" [default: 1,2]\n"); + HDprintf(" -t Selects extendable dimensions for HDF5 dataset\n"); + HDprintf(" [default: Off]\n"); + HDprintf(" -v VFD Selects file driver for HDF5 access\n"); + HDprintf(" [default: sec2]\n"); + HDprintf(" -w Perform write tests, not the read tests\n"); + HDprintf(" [default: Off]\n"); + HDprintf(" -x SL Dimensions and sizes of the transfer buffer\n"); + HDprintf(" [default: 10,20]\n"); + HDprintf("\n"); + HDprintf(" N - is an integer > 0.\n"); + HDprintf("\n"); + HDprintf(" S - is a size specifier, an integer > 0 followed by a size indicator:\n"); + HDprintf(" K - Kilobyte (%d)\n", ONE_KB); + HDprintf(" M - Megabyte (%d)\n", ONE_MB); + HDprintf(" G - Gigabyte (%d)\n", ONE_GB); + HDprintf("\n"); + HDprintf(" Example: '37M' is 37 megabytes or %d bytes\n", 37*ONE_MB); + HDprintf("\n"); + HDprintf(" AL - is an API list. Valid values are:\n"); + HDprintf(" hdf5 - HDF5\n"); + HDprintf(" posix - POSIX\n"); + HDprintf("\n"); + HDprintf(" Example: -A posix,hdf5\n"); + HDprintf("\n"); + HDprintf(" NL - is list of integers (N) separated by commas.\n"); + HDprintf("\n"); + HDprintf(" Example: 1,2,3\n"); + HDprintf("\n"); + HDprintf(" SL - is list of size specifiers (S) separated by commas.\n"); + HDprintf("\n"); + HDprintf(" Example: 2K,2K,3K\n"); + HDprintf("\n"); + HDprintf(" The example defines an object (dataset, tranfer buffer) with three\n"); + HDprintf(" dimensions. Be aware that as the number of dimensions increases, the\n"); + HDprintf(" the total size of the object increases exponentially.\n"); + HDprintf("\n"); + HDprintf(" VFD - is an HDF5 file driver specifier. Valid values are:\n"); + HDprintf(" sec2, stdio, core, split, multi, family, direct\n"); + HDprintf("\n"); + HDprintf(" Dimension access order:\n"); + HDprintf(" Data access starts at the cardinal origin of the dataset using the\n"); + HDprintf(" transfer buffer. The next access occurs on a dataset region next to\n"); + HDprintf(" the previous one. For a multidimensional dataset, there are several\n"); + HDprintf(" directions as to where to proceed. This can be specified in the dimension\n"); + HDprintf(" access order. For example, -r 1,2 states that the tool should traverse\n"); + HDprintf(" dimension 1 first, and then dimension 2.\n"); + HDprintf("\n"); + HDprintf(" Environment variables:\n"); + HDprintf(" HDF5_NOCLEANUP Do not remove data files if set [default remove]\n"); + HDprintf(" HDF5_PREFIX Data file prefix\n"); + HDprintf("\n"); fflush(stdout); } /* end usage() */ diff --git a/tools/test/perform/sio_standalone.h b/tools/test/perform/sio_standalone.h index e73a6b5..5ce922b 100644 --- a/tools/test/perform/sio_standalone.h +++ b/tools/test/perform/sio_standalone.h @@ -316,6 +316,7 @@ H5_DLL int HDfprintf (FILE *stream, const char *fmt, ...); #define HDpipe(F) pipe(F) #define HDpow(X,Y) pow(X,Y) /* printf() variable arguments */ +#define HDprintf(...) HDfprintf(stdout, __VA_ARGS__) #define HDputc(C,F) putc(C,F) #define HDputchar(C) putchar(C) #define HDputs(S) puts(S) @@ -377,6 +378,7 @@ H5_DLL int c99_snprintf(char* str, size_t size, const char* format, ...); #define HDsnprintf snprintf /*varargs*/ #endif /* sprintf() variable arguments */ +#define HDsprintf sprintf /*varargs*/ #define HDsqrt(X) sqrt(X) #ifdef H5_HAVE_RAND_R H5_DLL void HDsrand(unsigned int seed); |