diff options
| -rw-r--r-- | INSTALL_TFLOPS | 64 |
1 files changed, 53 insertions, 11 deletions
diff --git a/INSTALL_TFLOPS b/INSTALL_TFLOPS index 72cdec8..a05ef7f 100644 --- a/INSTALL_TFLOPS +++ b/INSTALL_TFLOPS @@ -4,6 +4,13 @@ FOR THE INTEL TFLOPS MACHINE: Below are the step-by-step procedures for building, testing, and installing both the sequential and parallel versions of the HDF5 library. +----------------- +Software locations +------------------ +The zlib compression library is installed in /usr/community/hdf5/ZLIB. +The mpich library, including mpi-io support, is in +/usr/community/mpich/mpich-1.2.0. + --------------- Sequential HDF5: --------------- @@ -24,6 +31,26 @@ FROM SASN100, 1) cd <hdf5> 2) ./configure tflop + Due to a bug, you need to patch up two Makefile, src/Makefile and + test/Makefile, before the next step. You can use the following + shell commands. + +# Patch up various Makefile's. +# patch up src/Makefile +echo "patching src/Makefile" +ed - src/Makefile <<'EOF' +/^LT_RUN=.*/s//LT_RUN=$(RUNTEST)/ +w +q +EOF + +# patch up test/Makefile +echo "patching test/Makefile" +ed - test/Makefile <<'EOF' +/^RUNTEST=$(LT_RUN)/s/^/#/ +w +q +EOF 3) make H5detect @@ -44,11 +71,8 @@ When everything is finished compiling and linking, you can run the tests by FROM JANUS, -7.1) Due to a bug, you must first remove the following line from - the file test/Makefile before the next step. - RUNTEST=$(LT_RUN) -7.2) make check -7.3) Sometimes the "make check" fails in the sub-directories of test +7) make check + Sometimes the "make check" fails in the sub-directories of test or tools with a message as "print not found". This is due to the "make" of Janus thinking some binary code needs to be recompiled. The easiest way to fix it is @@ -79,7 +103,28 @@ FROM SASN100, 1) cd <hdf5> -2) sh bin/config_para_tflops.sh /* this is different from the sequential version */ +2) CC=/usr/community/mpich/mpich-1.2.0/bin/mpicc ./configure tflop + Due to a bug, you need to patch up two Makefile, src/Makefile and + test/Makefile, before the next step. You can use the following + shell commands. + +# Patch up various Makefile's. +# patch up src/Makefile +echo "patching src/Makefile" +ed - src/Makefile <<'EOF' +/^LT_RUN=.*/s//LT_RUN=$(RUNTEST)/ +w +q +EOF + +# patch up test/Makefile +echo "patching test/Makefile" +ed - test/Makefile <<'EOF' +/^RUNTEST=$(LT_RUN)/s/^/#/ +w +q +EOF + 3) make H5detect @@ -99,11 +144,8 @@ FROM SASN100, When everything is finished compiling and linking, FROM JANUS, -7.1) Due to a bug, you must first remove the following line from - the file test/Makefile before the next step. - RUNTEST=$(LT_RUN) -7.2) make check -7.3) Sometimes the "make check" fails in the sub-directories of test +7) make check + Sometimes the "make check" fails in the sub-directories of test or tools with a message as "print not found". This is due to the "make" of Janus thinking some binary code needs to be recompiled. The easiest way to fix it is |