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-rw-r--r--HDF5Examples/C/H5PAR/ph5_dataset.c18
-rw-r--r--HDF5Examples/C/H5PAR/ph5_file_create.c18
-rw-r--r--HDF5Examples/C/H5PAR/ph5_filtered_writes.c18
-rw-r--r--HDF5Examples/C/H5PAR/ph5_filtered_writes_no_sel.c18
-rw-r--r--HDF5Examples/C/H5PAR/ph5_hyperslab_by_chunk.c18
-rw-r--r--HDF5Examples/C/H5PAR/ph5_hyperslab_by_col.c18
-rw-r--r--HDF5Examples/C/H5PAR/ph5_hyperslab_by_pattern.c18
-rw-r--r--HDF5Examples/C/H5PAR/ph5_hyperslab_by_row.c18
-rw-r--r--HDF5Examples/C/H5PAR/ph5example.c18
-rw-r--r--HDF5Examples/config/cmake/grepTest.cmake17
-rw-r--r--HDF5Examples/config/cmake/runTest.cmake19
11 files changed, 179 insertions, 19 deletions
diff --git a/HDF5Examples/C/H5PAR/ph5_dataset.c b/HDF5Examples/C/H5PAR/ph5_dataset.c
index 9b8e8a8..0c25fcc 100644
--- a/HDF5Examples/C/H5PAR/ph5_dataset.c
+++ b/HDF5Examples/C/H5PAR/ph5_dataset.c
@@ -54,6 +54,24 @@ main(int argc, char **argv)
H5Pset_fapl_mpio(plist_id, comm, info);
/*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata reads on FAPL to perform metadata reads
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_all_coll_metadata_ops(plist_id, true);
+
+ /*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata writes on FAPL to perform metadata writes
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_coll_metadata_write(plist_id, true);
+
+ /*
* Create a new file collectively and release property list identifier.
*/
file_id = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, plist_id);
diff --git a/HDF5Examples/C/H5PAR/ph5_file_create.c b/HDF5Examples/C/H5PAR/ph5_file_create.c
index a3bd0a8..10938f2 100644
--- a/HDF5Examples/C/H5PAR/ph5_file_create.c
+++ b/HDF5Examples/C/H5PAR/ph5_file_create.c
@@ -37,6 +37,24 @@ main(int argc, char **argv)
H5Pset_fapl_mpio(plist_id, comm, info);
/*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata reads on FAPL to perform metadata reads
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_all_coll_metadata_ops(plist_id, true);
+
+ /*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata writes on FAPL to perform metadata writes
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_coll_metadata_write(plist_id, true);
+
+ /*
* Create a new file collectively.
*/
file_id = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, plist_id);
diff --git a/HDF5Examples/C/H5PAR/ph5_filtered_writes.c b/HDF5Examples/C/H5PAR/ph5_filtered_writes.c
index 104704a..34ed2fb 100644
--- a/HDF5Examples/C/H5PAR/ph5_filtered_writes.c
+++ b/HDF5Examples/C/H5PAR/ph5_filtered_writes.c
@@ -377,14 +377,24 @@ main(int argc, char **argv)
H5Pset_fapl_mpio(fapl_id, comm, info);
/*
- * OPTIONAL: Set collective metadata reads on FAPL to allow
- * parallel writes to filtered datasets to perform
- * better at scale. While not strictly necessary,
- * this is generally recommended.
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata reads on FAPL to perform metadata reads
+ * collectively, which usually allows filtered datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
*/
H5Pset_all_coll_metadata_ops(fapl_id, true);
/*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata writes on FAPL to perform metadata writes
+ * collectively, which usually allows filtered datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_coll_metadata_write(fapl_id, true);
+
+ /*
* OPTIONAL: Set the latest file format version for HDF5 in
* order to gain access to different dataset chunk
* index types and better data encoding methods.
diff --git a/HDF5Examples/C/H5PAR/ph5_filtered_writes_no_sel.c b/HDF5Examples/C/H5PAR/ph5_filtered_writes_no_sel.c
index a4d9e16..d4f171f 100644
--- a/HDF5Examples/C/H5PAR/ph5_filtered_writes_no_sel.c
+++ b/HDF5Examples/C/H5PAR/ph5_filtered_writes_no_sel.c
@@ -271,14 +271,24 @@ main(int argc, char **argv)
H5Pset_fapl_mpio(fapl_id, comm, info);
/*
- * OPTIONAL: Set collective metadata reads on FAPL to allow
- * parallel writes to filtered datasets to perform
- * better at scale. While not strictly necessary,
- * this is generally recommended.
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata reads on FAPL to perform metadata reads
+ * collectively, which usually allows filtered datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
*/
H5Pset_all_coll_metadata_ops(fapl_id, true);
/*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata writes on FAPL to perform metadata writes
+ * collectively, which usually allows filtered datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_coll_metadata_write(fapl_id, true);
+
+ /*
* OPTIONAL: Set the latest file format version for HDF5 in
* order to gain access to different dataset chunk
* index types and better data encoding methods.
diff --git a/HDF5Examples/C/H5PAR/ph5_hyperslab_by_chunk.c b/HDF5Examples/C/H5PAR/ph5_hyperslab_by_chunk.c
index a255b96..e00a0ef 100644
--- a/HDF5Examples/C/H5PAR/ph5_hyperslab_by_chunk.c
+++ b/HDF5Examples/C/H5PAR/ph5_hyperslab_by_chunk.c
@@ -65,6 +65,24 @@ main(int argc, char **argv)
H5Pset_fapl_mpio(plist_id, comm, info);
/*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata reads on FAPL to perform metadata reads
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_all_coll_metadata_ops(plist_id, true);
+
+ /*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata writes on FAPL to perform metadata writes
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_coll_metadata_write(plist_id, true);
+
+ /*
* Create a new file collectively and release property list identifier.
*/
file_id = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, plist_id);
diff --git a/HDF5Examples/C/H5PAR/ph5_hyperslab_by_col.c b/HDF5Examples/C/H5PAR/ph5_hyperslab_by_col.c
index b397fcf..49e5ce3 100644
--- a/HDF5Examples/C/H5PAR/ph5_hyperslab_by_col.c
+++ b/HDF5Examples/C/H5PAR/ph5_hyperslab_by_col.c
@@ -60,6 +60,24 @@ main(int argc, char **argv)
H5Pset_fapl_mpio(plist_id, comm, info);
/*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata reads on FAPL to perform metadata reads
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_all_coll_metadata_ops(plist_id, true);
+
+ /*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata writes on FAPL to perform metadata writes
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_coll_metadata_write(plist_id, true);
+
+ /*
* Create a new file collectively and release property list identifier.
*/
file_id = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, plist_id);
diff --git a/HDF5Examples/C/H5PAR/ph5_hyperslab_by_pattern.c b/HDF5Examples/C/H5PAR/ph5_hyperslab_by_pattern.c
index 77f3bef..bec3a2f 100644
--- a/HDF5Examples/C/H5PAR/ph5_hyperslab_by_pattern.c
+++ b/HDF5Examples/C/H5PAR/ph5_hyperslab_by_pattern.c
@@ -65,6 +65,24 @@ main(int argc, char **argv)
H5Pset_fapl_mpio(plist_id, comm, info);
/*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata reads on FAPL to perform metadata reads
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_all_coll_metadata_ops(plist_id, true);
+
+ /*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata writes on FAPL to perform metadata writes
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_coll_metadata_write(plist_id, true);
+
+ /*
* Create a new file collectively and release property list identifier.
*/
file_id = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, plist_id);
diff --git a/HDF5Examples/C/H5PAR/ph5_hyperslab_by_row.c b/HDF5Examples/C/H5PAR/ph5_hyperslab_by_row.c
index 5035786..1c08a32 100644
--- a/HDF5Examples/C/H5PAR/ph5_hyperslab_by_row.c
+++ b/HDF5Examples/C/H5PAR/ph5_hyperslab_by_row.c
@@ -49,6 +49,24 @@ main(int argc, char **argv)
H5Pset_fapl_mpio(plist_id, comm, info);
/*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata reads on FAPL to perform metadata reads
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_all_coll_metadata_ops(plist_id, true);
+
+ /*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata writes on FAPL to perform metadata writes
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_coll_metadata_write(plist_id, true);
+
+ /*
* Create a new file collectively and release property list identifier.
*/
file_id = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, plist_id);
diff --git a/HDF5Examples/C/H5PAR/ph5example.c b/HDF5Examples/C/H5PAR/ph5example.c
index 5ec2cdc..37d5d68 100644
--- a/HDF5Examples/C/H5PAR/ph5example.c
+++ b/HDF5Examples/C/H5PAR/ph5example.c
@@ -269,6 +269,24 @@ phdf5writeInd(char *filename)
assert(ret != FAIL);
MESG("H5Pset_fapl_mpio succeed");
+ /*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata reads on FAPL to perform metadata reads
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_all_coll_metadata_ops(acc_tpl1, true);
+
+ /*
+ * OPTIONAL: It is generally recommended to set collective
+ * metadata writes on FAPL to perform metadata writes
+ * collectively, which usually allows datasets
+ * to perform better at scale, although it is not
+ * strictly necessary.
+ */
+ H5Pset_coll_metadata_write(acc_tpl1, true);
+
/* create the file collectively */
fid1 = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, acc_tpl1);
assert(fid1 != FAIL);
diff --git a/HDF5Examples/config/cmake/grepTest.cmake b/HDF5Examples/config/cmake/grepTest.cmake
index 2ec8387..4031a1b 100644
--- a/HDF5Examples/config/cmake/grepTest.cmake
+++ b/HDF5Examples/config/cmake/grepTest.cmake
@@ -70,11 +70,18 @@ message (STATUS "COMMAND Result: ${TEST_RESULT}")
message (STATUS "COMMAND Error: ${TEST_ERROR}")
# remove special output
-file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-string (FIND TEST_STREAM "_pmi_alps" TEST_FIND_RESULT)
-if (TEST_FIND_RESULT GREATER -1)
- string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
- file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_STREAM})
+if (EXISTS "${TEST_FOLDER}/${TEST_OUTPUT}")
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+ string (FIND "${TEST_STREAM}" "_pmi_alps" TEST_FIND_RESULT)
+ if (TEST_FIND_RESULT GREATER -1)
+ string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+ endif ()
+ string (FIND "${TEST_STREAM}" "ulimit -s" TEST_FIND_RESULT)
+ if (TEST_FIND_RESULT GREATER -1)
+ string (REGEX REPLACE "^.*ulimit -s[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+ endif ()
endif ()
# if the TEST_ERRREF exists grep the error output with the error reference
diff --git a/HDF5Examples/config/cmake/runTest.cmake b/HDF5Examples/config/cmake/runTest.cmake
index d21765a..3507c34 100644
--- a/HDF5Examples/config/cmake/runTest.cmake
+++ b/HDF5Examples/config/cmake/runTest.cmake
@@ -133,11 +133,18 @@ endif ()
message (STATUS "COMMAND Error: ${TEST_ERROR}")
# remove special output
-file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-string (FIND TEST_STREAM "_pmi_alps" TEST_FIND_RESULT)
-if (TEST_FIND_RESULT GREATER -1)
- string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
- file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_STREAM})
+if (EXISTS "${TEST_FOLDER}/${TEST_OUTPUT}")
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+ string (FIND "${TEST_STREAM}" "_pmi_alps" TEST_FIND_RESULT)
+ if (TEST_FIND_RESULT GREATER -1)
+ string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+ endif ()
+ string (FIND "${TEST_STREAM}" "ulimit -s" TEST_FIND_RESULT)
+ if (TEST_FIND_RESULT GREATER -1)
+ string (REGEX REPLACE "^.*ulimit -s[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+ endif ()
endif ()
# remove special error output
@@ -148,7 +155,7 @@ else ()
# the error stack remains in the .err file
file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
endif ()
-string (FIND TEST_STREAM "no version information available" TEST_FIND_RESULT)
+string (FIND "${TEST_STREAM}" "no version information available" TEST_FIND_RESULT)
if (TEST_FIND_RESULT GREATER -1)
string (REGEX REPLACE "^.*no version information available[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
# write back the changes to the original files
generated by cgit v0.12 at 2024-11-10 18:34:11 (GMT)